Psyllid ID: psy12825
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 488 | 2.2.26 [Sep-21-2011] | |||||||
| Q95028 | 332 | L-lactate dehydrogenase O | yes | N/A | 0.665 | 0.978 | 0.596 | 1e-115 | |
| P13743 | 333 | L-lactate dehydrogenase B | N/A | N/A | 0.665 | 0.975 | 0.581 | 1e-114 | |
| P00337 | 333 | L-lactate dehydrogenase B | yes | N/A | 0.665 | 0.975 | 0.581 | 1e-114 | |
| Q4R5B6 | 334 | L-lactate dehydrogenase B | N/A | N/A | 0.653 | 0.955 | 0.591 | 1e-113 | |
| P07195 | 334 | L-lactate dehydrogenase B | yes | N/A | 0.653 | 0.955 | 0.591 | 1e-113 | |
| P16125 | 334 | L-lactate dehydrogenase B | yes | N/A | 0.665 | 0.973 | 0.585 | 1e-113 | |
| A5A6N7 | 334 | L-lactate dehydrogenase B | yes | N/A | 0.653 | 0.955 | 0.591 | 1e-113 | |
| P42123 | 334 | L-lactate dehydrogenase B | yes | N/A | 0.639 | 0.934 | 0.602 | 1e-113 | |
| P00336 | 334 | L-lactate dehydrogenase B | yes | N/A | 0.653 | 0.955 | 0.594 | 1e-113 | |
| Q5E9B1 | 334 | L-lactate dehydrogenase B | yes | N/A | 0.653 | 0.955 | 0.588 | 1e-113 |
| >sp|Q95028|LDH_DROME L-lactate dehydrogenase OS=Drosophila melanogaster GN=ImpL3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/325 (59%), Positives = 252/325 (77%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
D LL+QVA + S K+T+VG GQVGMA +SIL Q + CLID D+ +GE++DL
Sbjct: 6 DSLLAQVAEVLPSSGHKVTIVGIGQVGMASAFSILAQNVSKEVCLIDVCADKLQGELMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++P+I + +D A S SR+ I+TAGVR GE+RL LV RN I K++IPK+
Sbjct: 66 QHGSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
+ SPD ILL++SNPVD++TY++WKLSG PKNRVIGSGTNLDS RFR L++Q+LG++P S
Sbjct: 126 EYSPDTILLMVSNPVDIMTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+IIGEHGDSSVPVWSGVN+AGV L+ELNP +GT +D E + LH VV+SAYEVIKLK
Sbjct: 186 HGWIIGEHGDSSVPVWSGVNIAGVRLRELNPILGTGEDPEKWNELHKQVVDSAYEVIKLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYTSWA+GLS AS++ +L NT+ + AVST + G HGI+++VFLSLPCV+ NGVT ++
Sbjct: 246 GYTSWAIGLSTASLASAILRNTSSVAAVSTSVLGEHGIDKDVFLSLPCVLNANGVTSVVK 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q LTP E E+L+KSA +S +Q GL
Sbjct: 306 QILTPTEVEQLQKSANIMSDVQAGL 330
|
Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 7 |
| >sp|P13743|LDHB_ANAPL L-lactate dehydrogenase B chain OS=Anas platyrhynchos GN=LDHB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/325 (58%), Positives = 255/325 (78%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
++L++ VA + P KITVVG GQVGMAC SIL +G+ L+D ED+ KGEM+DL
Sbjct: 6 EKLMTPVAAASAVPSSKITVVGVGQVGMACAVSILGKGLCDELALVDVLEDKLKGEMMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++ KI + D A++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 QHGSLFLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVGVFKGIIPQIV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
K SP+C +L++SNPVD+LTY++WKLSG PK+RVIGSG NLD+ RFR L+A++LG+ P S
Sbjct: 126 KYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERLGIHPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT++D+EN+ +H VV SAYEVI+LK
Sbjct: 186 HGWILGEHGDSSVAVWSGVNVAGVSLQELNPAMGTDKDSENWKEVHKQVVESAYEVIRLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYT+WA+GLSVA + T+L N ++H+VSTL++G +GIE +VFLSLPCV++ +G+T +IN
Sbjct: 246 GYTNWAIGLSVAELCETMLKNLCRVHSVSTLVKGTYGIENDVFLSLPCVLSASGLTSVIN 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q L DE +L+KSA T+ IQK L
Sbjct: 306 QKLKDDEVAQLKKSADTLWSIQKDL 330
|
In duck lens LDH-B is used as a crystallin: epsilon-crystallin. Anas platyrhynchos (taxid: 8839) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|P00337|LDHB_CHICK L-lactate dehydrogenase B chain OS=Gallus gallus GN=LDHB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/325 (58%), Positives = 254/325 (78%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
++L++ VA P KITVVG GQVGMAC SIL +G+ L+D ED+ KGEM+DL
Sbjct: 6 EKLITPVAAGSTVPSNKITVVGVGQVGMACAISILGKGLCDELALVDVLEDKLKGEMMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++ KI + D A++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 QHGSLFLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
K SP+C +L++SNPVD+LTY++WKLSG PK+RVIGSG NLD+ RFR L+A++LG+ P S
Sbjct: 126 KYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERLGIHPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT++D+EN+ +H VV SAYEVI+LK
Sbjct: 186 HGWILGEHGDSSVAVWSGVNVAGVSLQELNPAMGTDKDSENWKEVHKQVVESAYEVIRLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYT+WA+GLSVA + T+L N ++H+VSTL++G +GIE +VFLSLPCV++ +G+T +IN
Sbjct: 246 GYTNWAIGLSVAELCETMLKNLYRVHSVSTLVKGTYGIENDVFLSLPCVLSASGLTSVIN 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q L DE +L+KSA T+ IQK L
Sbjct: 306 QKLKDDEVAQLKKSADTLWSIQKDL 330
|
Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|Q4R5B6|LDHB_MACFA L-lactate dehydrogenase B chain OS=Macaca fascicularis GN=LDHB PE=2 SV=3 | Back alignment and function description |
|---|
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/323 (59%), Positives = 250/323 (77%), Gaps = 4/323 (1%)
Query: 169 VAPSIES----PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224
+AP E P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+DLQH
Sbjct: 9 IAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH 68
Query: 225 GAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG 284
G+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I K
Sbjct: 69 GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY 128
Query: 285 SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG 344
SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S HG
Sbjct: 129 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHG 188
Query: 345 FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY 404
+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKLKGY
Sbjct: 189 WILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGY 248
Query: 405 TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN 464
T+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +INQ
Sbjct: 249 TNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQK 308
Query: 465 LTPDEAEKLRKSAATISQIQKGL 487
L DE +L+KSA T+ IQK L
Sbjct: 309 LKDDEVAQLKKSADTLWDIQKDL 331
|
Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|P07195|LDHB_HUMAN L-lactate dehydrogenase B chain OS=Homo sapiens GN=LDHB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/323 (59%), Positives = 250/323 (77%), Gaps = 4/323 (1%)
Query: 169 VAPSIES----PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224
+AP E P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+DLQH
Sbjct: 9 IAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH 68
Query: 225 GAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG 284
G+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I K
Sbjct: 69 GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY 128
Query: 285 SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG 344
SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S HG
Sbjct: 129 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHG 188
Query: 345 FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY 404
+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKLKGY
Sbjct: 189 WILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGY 248
Query: 405 TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN 464
T+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +INQ
Sbjct: 249 TNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQK 308
Query: 465 LTPDEAEKLRKSAATISQIQKGL 487
L DE +L+KSA T+ IQK L
Sbjct: 309 LKDDEVAQLKKSADTLWDIQKDL 331
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|P16125|LDHB_MOUSE L-lactate dehydrogenase B chain OS=Mus musculus GN=Ldhb PE=1 SV=2 | Back alignment and function description |
|---|
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/326 (58%), Positives = 254/326 (77%), Gaps = 1/326 (0%)
Query: 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA + P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 6 EKLIASVADDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD 65
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 125
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K SPDC ++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S
Sbjct: 126 VKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSS 185
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV+SAYEVIKL
Sbjct: 186 CHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKL 245
Query: 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
KGYT+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +I
Sbjct: 246 KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI 305
Query: 462 NQNLTPDEAEKLRKSAATISQIQKGL 487
NQ L DE +LRKSA T+ IQK L
Sbjct: 306 NQKLKDDEVAQLRKSADTLWDIQKDL 331
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|A5A6N7|LDHB_PANTR L-lactate dehydrogenase B chain OS=Pan troglodytes GN=LDHB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/323 (59%), Positives = 250/323 (77%), Gaps = 4/323 (1%)
Query: 169 VAPSIES----PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224
+AP E P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+DLQH
Sbjct: 9 IAPVAEEEATIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH 68
Query: 225 GAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG 284
G+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I K
Sbjct: 69 GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY 128
Query: 285 SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG 344
SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S HG
Sbjct: 129 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHG 188
Query: 345 FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY 404
+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKLKGY
Sbjct: 189 WILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGY 248
Query: 405 TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN 464
T+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +INQ
Sbjct: 249 TNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQK 308
Query: 465 LTPDEAEKLRKSAATISQIQKGL 487
L DE +L+KSA T+ IQK L
Sbjct: 309 LKDDEVAQLKKSADTLWDIQKDL 331
|
Pan troglodytes (taxid: 9598) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|P42123|LDHB_RAT L-lactate dehydrogenase B chain OS=Rattus norvegicus GN=Ldhb PE=1 SV=2 | Back alignment and function description |
|---|
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/312 (60%), Positives = 246/312 (78%)
Query: 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE 235
P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+DLQHG+ FL++PKI
Sbjct: 20 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 236 SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
+ D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I K SPDC ++++SN
Sbjct: 80 ADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTIIVVSN 139
Query: 296 PVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSV 355
PVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S HG+I+GEHGDSSV
Sbjct: 140 PVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 199
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415
VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV+SAYEVIKLKGYT+WA+GLSVA
Sbjct: 200 AVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKLKGYTNWAIGLSVAD 259
Query: 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475
+ ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +INQ L DE +LRK
Sbjct: 260 LIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLRK 319
Query: 476 SAATISQIQKGL 487
SA T+ IQK L
Sbjct: 320 SADTLWDIQKDL 331
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|P00336|LDHB_PIG L-lactate dehydrogenase B chain OS=Sus scrofa GN=LDHB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/323 (59%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
Query: 169 VAPSIES----PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224
+AP E P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+DLQH
Sbjct: 9 IAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQH 68
Query: 225 GAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG 284
G+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I K
Sbjct: 69 GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY 128
Query: 285 SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG 344
SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S HG
Sbjct: 129 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHG 188
Query: 345 FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY 404
+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKLKGY
Sbjct: 189 WILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGY 248
Query: 405 TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN 464
T+WA+GLSVA + ++L N ++IH VST++QG +GIE EVFLSLPCV+ G+T +INQ
Sbjct: 249 TNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIENEVFLSLPCVLNARGLTSVINQK 308
Query: 465 LTPDEAEKLRKSAATISQIQKGL 487
L DE +L+ SA T+ IQK L
Sbjct: 309 LKDDEVAQLKNSADTLWGIQKDL 331
|
Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
| >sp|Q5E9B1|LDHB_BOVIN L-lactate dehydrogenase B chain OS=Bos taurus GN=LDHB PE=2 SV=4 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/323 (58%), Positives = 250/323 (77%), Gaps = 4/323 (1%)
Query: 169 VAPSIES----PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224
+AP E P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+DLQH
Sbjct: 9 IAPVAEEETRIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQH 68
Query: 225 GAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG 284
G+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I K
Sbjct: 69 GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY 128
Query: 285 SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG 344
SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S HG
Sbjct: 129 SPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHG 188
Query: 345 FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY 404
+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKLKGY
Sbjct: 189 WILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGY 248
Query: 405 TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN 464
T+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +INQ
Sbjct: 249 TNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQK 308
Query: 465 LTPDEAEKLRKSAATISQIQKGL 487
L +E +L+KSA T+ IQK L
Sbjct: 309 LKDEEVAQLKKSADTLWGIQKDL 331
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 488 | ||||||
| 58385914 | 332 | AGAP004880-PB [Anopheles gambiae str. PE | 0.663 | 0.975 | 0.620 | 1e-122 | |
| 432088957 | 429 | L-lactate dehydrogenase B chain [Myotis | 0.770 | 0.876 | 0.550 | 1e-120 | |
| 170058421 | 331 | l-lactate dehydrogenase [Culex quinquefa | 0.663 | 0.978 | 0.614 | 1e-120 | |
| 170063026 | 331 | l-lactate dehydrogenase [Culex quinquefa | 0.663 | 0.978 | 0.611 | 1e-120 | |
| 157131170 | 331 | l-lactate dehydrogenase [Aedes aegypti] | 0.663 | 0.978 | 0.611 | 1e-119 | |
| 195015198 | 332 | GH16279 [Drosophila grimshawi] gi|193897 | 0.665 | 0.978 | 0.6 | 1e-115 | |
| 289740453 | 332 | lactate dehydrogenase [Glossina morsitan | 0.665 | 0.978 | 0.593 | 1e-115 | |
| 332017761 | 497 | L-lactate dehydrogenase [Acromyrmex echi | 0.665 | 0.653 | 0.603 | 1e-114 | |
| 194752187 | 332 | GF10902 [Drosophila ananassae] gi|190625 | 0.665 | 0.978 | 0.596 | 1e-114 | |
| 307169552 | 332 | L-lactate dehydrogenase [Camponotus flor | 0.665 | 0.978 | 0.593 | 1e-114 |
| >gi|58385914|ref|XP_314306.2| AGAP004880-PB [Anopheles gambiae str. PEST] gi|158292996|ref|XP_001688555.1| AGAP004880-PC [Anopheles gambiae str. PEST] gi|158292998|ref|XP_001688556.1| AGAP004880-PA [Anopheles gambiae str. PEST] gi|55240259|gb|EAA09690.2| AGAP004880-PB [Anopheles gambiae str. PEST] gi|157016894|gb|EDO64032.1| AGAP004880-PC [Anopheles gambiae str. PEST] gi|157016895|gb|EDO64033.1| AGAP004880-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/324 (62%), Positives = 262/324 (80%)
Query: 164 RLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223
+LL+Q+A + S K+TVVG GQVGMAC +SILTQ + S LID N D+ +GEM+DLQ
Sbjct: 7 KLLTQIAEPMTSSGNKVTVVGIGQVGMACAFSILTQNVSSEVALIDVNADKLQGEMMDLQ 66
Query: 224 HGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK 283
HG+ F+++ + +G+D ++S GSR+++ITAGVR GE+RL LV RN I K +IPK+
Sbjct: 67 HGSAFMKNAHVSAGTDFSVSAGSRLIVITAGVRQKEGESRLDLVQRNTDILKGIIPKLVA 126
Query: 284 GSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVH 343
SPDCILL++SNPVD+LTY++WKLSG PKNRVIGSGTNLDS RFR L++QKLG++P S H
Sbjct: 127 QSPDCILLVVSNPVDILTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQKLGVAPTSCH 186
Query: 344 GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403
G+IIGEHGDSSVPVWSGVNVAGV L E+NP+IGT+ DTE + LH VVNSAYEVI+LKG
Sbjct: 187 GWIIGEHGDSSVPVWSGVNVAGVRLAEINPSIGTDADTEKWGDLHHQVVNSAYEVIRLKG 246
Query: 404 YTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ 463
YTSWA+GLSVAS++ +L NT +HAVSTL++G HGI++EV+LSLPCV+ NGV+H++ Q
Sbjct: 247 YTSWAIGLSVASLASAILRNTYNVHAVSTLVKGEHGIDDEVYLSLPCVLGRNGVSHVVKQ 306
Query: 464 NLTPDEAEKLRKSAATISQIQKGL 487
LTP+E +KL+ SA ++Q+Q G+
Sbjct: 307 ILTPEETKKLQASATLMAQVQSGI 330
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|432088957|gb|ELK23142.1| L-lactate dehydrogenase B chain [Myotis davidii] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/396 (55%), Positives = 291/396 (73%), Gaps = 20/396 (5%)
Query: 108 ARDAVSTV-------------DRLLSQVAPS-IESPDQKITVVGAGQVGMACTYSILTQ- 152
ARDAV T+ ++L++ VA +P+ KITVVG GQVGMAC SIL +
Sbjct: 35 ARDAVFTLQLWVLRGTMATLKEKLIAPVAKEEATTPNNKITVVGVGQVGMACAISILGKG 94
Query: 153 TMARDAVSTVDRLLSQVAPS-IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211
TMA + ++L++ VA +P+ KITVVG GQVGMAC SIL + + L+D
Sbjct: 95 TMA----TLKEKLIAPVAKEEATTPNNKITVVGVGQVGMACAISILGKSLADELALVDVL 150
Query: 212 EDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNV 271
ED+ KGEM+DLQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV
Sbjct: 151 EDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNV 210
Query: 272 KIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLL 331
+FK +IP+I K SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR ++
Sbjct: 211 NVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYIM 270
Query: 332 AQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADV 391
A+KLG+ P S HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H V
Sbjct: 271 AEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPAMGTDNDSENWKEVHKMV 330
Query: 392 VNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCV 451
V SAYEVIKLKGYT+WA+GLSVA + ++ N ++IH VST+++G +GIE EVFLSLPC+
Sbjct: 331 VESAYEVIKLKGYTNWAIGLSVADLIESMFKNLSRIHPVSTMVKGMYGIENEVFLSLPCI 390
Query: 452 MADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
+ G+T +INQ L DE +L+KSA T+ IQK L
Sbjct: 391 LNARGLTSVINQKLKDDEVAQLKKSADTLWNIQKDL 426
|
Source: Myotis davidii Species: Myotis davidii Genus: Myotis Family: Vespertilionidae Order: Chiroptera Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|170058421|ref|XP_001864915.1| l-lactate dehydrogenase [Culex quinquefasciatus] gi|167877547|gb|EDS40930.1| l-lactate dehydrogenase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/324 (61%), Positives = 259/324 (79%)
Query: 164 RLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223
+L+ ++A + S K+TVVG GQVGMAC +SILTQ + S LID N D+ +GEMLDLQ
Sbjct: 6 KLMMEIAEPMTSSGNKVTVVGIGQVGMACAFSILTQSVSSEVALIDVNADKLQGEMLDLQ 65
Query: 224 HGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK 283
HG+ F+++ +I++ +D A+S GSR+++ITAGVR GE+RL LV RN I K +IPK+ +
Sbjct: 66 HGSAFMKNAQIQASTDFAVSAGSRLIVITAGVRQKEGESRLNLVQRNCDILKGIIPKLVE 125
Query: 284 GSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVH 343
SPDCILL++SNPVD++TY++WK+SG PKNRVIGSGTNLDS RFR L++Q+LG++P S H
Sbjct: 126 HSPDCILLMVSNPVDIMTYVAWKISGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCH 185
Query: 344 GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403
G+IIGEHGDSSVPVWSGVNVAGV L E+NP+IGT D E + LH +VVNSAYEVIKLKG
Sbjct: 186 GWIIGEHGDSSVPVWSGVNVAGVRLAEINPSIGTADDDEKWGELHHEVVNSAYEVIKLKG 245
Query: 404 YTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ 463
YTSWA+GLSVAS++ LL NT +HAVSTL+ G HGI EEV+LSLPCV+ NGV+H++ Q
Sbjct: 246 YTSWAIGLSVASLASALLRNTYNVHAVSTLVTGEHGISEEVYLSLPCVLGRNGVSHVVKQ 305
Query: 464 NLTPDEAEKLRKSAATISQIQKGL 487
LT E +KL++SA +S++Q G+
Sbjct: 306 ILTEAETKKLQESAKIMSEVQAGI 329
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170063026|ref|XP_001866924.1| l-lactate dehydrogenase [Culex quinquefasciatus] gi|167880810|gb|EDS44193.1| l-lactate dehydrogenase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 198/324 (61%), Positives = 259/324 (79%)
Query: 164 RLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223
+L+ ++A + S K+TVVG GQVGMAC +SILTQ + S LID N D+ +GEMLDLQ
Sbjct: 6 KLMMEIAEPMTSSGNKVTVVGIGQVGMACAFSILTQSVSSEVALIDVNADKLQGEMLDLQ 65
Query: 224 HGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK 283
HG+ F+++ ++++ +D A+S GSR+++ITAGVR GE+RL LV RN I K +IPK+ +
Sbjct: 66 HGSAFMKNAQVQASTDFAVSAGSRLIVITAGVRQKEGESRLNLVQRNCDILKGIIPKLVE 125
Query: 284 GSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVH 343
SPDCILL++SNPVD++TY++WK+SG PKNRVIGSGTNLDS RFR L++Q+LG++P S H
Sbjct: 126 HSPDCILLMVSNPVDIMTYVAWKISGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCH 185
Query: 344 GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403
G+IIGEHGDSSVPVWSGVNVAGV L E+NP+IGT D E + LH +VVNSAYEVIKLKG
Sbjct: 186 GWIIGEHGDSSVPVWSGVNVAGVRLAEINPSIGTADDDEKWGELHHEVVNSAYEVIKLKG 245
Query: 404 YTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ 463
YTSWA+GLSVAS++ LL NT +HAVSTL+ G HGI EEV+LSLPCV+ NGV+H++ Q
Sbjct: 246 YTSWAIGLSVASLASALLRNTYNVHAVSTLVTGEHGINEEVYLSLPCVLGRNGVSHVVKQ 305
Query: 464 NLTPDEAEKLRKSAATISQIQKGL 487
LT E +KL++SA +S++Q G+
Sbjct: 306 ILTEAETKKLQESAKIMSEVQAGI 329
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157131170|ref|XP_001662150.1| l-lactate dehydrogenase [Aedes aegypti] gi|108871618|gb|EAT35843.1| AAEL012014-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 198/324 (61%), Positives = 257/324 (79%)
Query: 164 RLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223
+L+ ++A + + K+T+VG GQVGMAC +SILTQ + S LID N D+ KGEMLDLQ
Sbjct: 6 KLMKEIAEPMATSGNKVTIVGIGQVGMACAFSILTQSVSSEVALIDVNADKLKGEMLDLQ 65
Query: 224 HGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK 283
HG+ F+++ +I + +D A+S GSR+++ITAGVR GE+RL LV RN I K +IPK+ +
Sbjct: 66 HGSAFMKNAQINASTDFAVSAGSRLIVITAGVRQKEGESRLNLVQRNCDILKGIIPKLVE 125
Query: 284 GSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVH 343
SPDCILL++SNPVD+LTY++WKLSG PKNRVIGSGTNLDS RFR L++Q+LG++P S H
Sbjct: 126 LSPDCILLVVSNPVDILTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSCH 185
Query: 344 GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403
G+IIGEHGDSSVPVWSGVNVAGV L ELNP+IGT D E + LH +VVNSAYEVI+LKG
Sbjct: 186 GWIIGEHGDSSVPVWSGVNVAGVRLSELNPSIGTADDEEKWGELHYEVVNSAYEVIRLKG 245
Query: 404 YTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ 463
YTSWA+GLSVAS++ LL NT +HAVSTL+ G GI +EV+LSLPCV+ NGVTH++ Q
Sbjct: 246 YTSWAIGLSVASLASALLRNTYNVHAVSTLVNGEQGITDEVYLSLPCVLGRNGVTHVVKQ 305
Query: 464 NLTPDEAEKLRKSAATISQIQKGL 487
LT E +KL++SA ++++Q G+
Sbjct: 306 ILTEAETKKLQESARIMAEVQAGI 329
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195015198|ref|XP_001984155.1| GH16279 [Drosophila grimshawi] gi|193897637|gb|EDV96503.1| GH16279 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/325 (60%), Positives = 253/325 (77%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
+ LL+QVA ++ S KITVVG G VGMA +SIL QG+ CLID D+ +GE++DL
Sbjct: 6 ESLLAQVAETLPSSGHKITVVGIGMVGMASAFSILAQGVSREVCLIDCCTDKLQGELMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++P+I + +D A S SR+ I+TAGVR GE+RL LV RN I K +IPK+
Sbjct: 66 QHGSNFLKNPQITASTDYAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKSIIPKLV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
+ SPDCILL++SNPVD++TY++WKLSG PKNRVIGSGTNLDS RFR L++Q+LG++P S
Sbjct: 126 ENSPDCILLMVSNPVDIMTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+IIGEHGDSSVPVWSGVN+AGV L+ELNPTIGT D E + LH VV+SAYEVIKLK
Sbjct: 186 HGWIIGEHGDSSVPVWSGVNIAGVRLRELNPTIGTGSDPEKWNELHKQVVDSAYEVIKLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYTSWA+GLS AS++ +L NT+ + A+ST + G HGI+++VFLSLPCV+ NGVT ++
Sbjct: 246 GYTSWAIGLSTASLASAILRNTSSVAAISTSVMGEHGIDKDVFLSLPCVLNANGVTSVVK 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q LT E ++L+KSA +S++Q GL
Sbjct: 306 QILTDTEVQQLQKSANIMSEVQAGL 330
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289740453|gb|ADD18974.1| lactate dehydrogenase [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/325 (59%), Positives = 254/325 (78%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
+ LL+QVA ++ S KIT+VG GQVGMAC +SIL Q + S CL+D +D+ GE++DL
Sbjct: 6 ENLLNQVAETLPSGGNKITIVGVGQVGMACAFSILAQNVSSEICLMDVCKDKLMGELMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++PKI + +D S SR+ I+TAGVR GE+RL LV RN I K +IPK+
Sbjct: 66 QHGSNFLKNPKITASADYVESANSRLCIVTAGVRQKEGESRLSLVQRNTDILKQIIPKLV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
+ SPD I+L++SNPVD++TY++WKLSG PKNR+IGSGTNLDS RFR L++Q+LG++P S
Sbjct: 126 ENSPDTIILMVSNPVDIMTYVAWKLSGLPKNRIIGSGTNLDSSRFRFLMSQRLGVAPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+IIGEHGDSSVPVWSGVN+AGV L+ELNP+IGT QD E + +H VV SAYEVIKLK
Sbjct: 186 HGWIIGEHGDSSVPVWSGVNIAGVRLRELNPSIGTAQDLEKWCEVHKQVVQSAYEVIKLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYTSWA+GLS A+++ +L NT+ I AVST + G HGI+++VFLSLPCV+ NGVTH+I
Sbjct: 246 GYTSWAIGLSTAALASAILRNTSAIVAVSTSVLGEHGIDKDVFLSLPCVLNANGVTHMIR 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q LT DE ++L+KSA ++++Q L
Sbjct: 306 QILTADEIQQLQKSANIMAEVQANL 330
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332017761|gb|EGI58429.1| L-lactate dehydrogenase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/325 (60%), Positives = 252/325 (77%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
D+LL+ V S+ + KITVVG GQVGMAC +SILT + S LID D+ KGEMLDL
Sbjct: 171 DQLLTTVTESVSTGRNKITVVGVGQVGMACAFSILTNHVSSEVILIDVMVDKLKGEMLDL 230
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ F+++ KI + +D A+S S + I+TAG R GETRL LV RN IFK +IP++
Sbjct: 231 QHGSAFMKNAKISASTDYAVSANSSLCIVTAGARQREGETRLNLVQRNTDIFKGIIPQLV 290
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
K SP+ ILLI+SNPVD+LTY++WKLSG PKNRVIGSGTNLDS RFR LL+QKL ++P S
Sbjct: 291 KYSPNTILLIVSNPVDILTYVAWKLSGLPKNRVIGSGTNLDSARFRFLLSQKLNVAPTSC 350
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+IIGEHGD+SVPVWSGVNVAGV L++LN +GT++D E++ LH V+ SAYEVIKLK
Sbjct: 351 HGWIIGEHGDTSVPVWSGVNVAGVRLRDLNEYVGTDKDEEHWNELHKQVIQSAYEVIKLK 410
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYTSWA+GLSV+ ++ +L N+N++HAVSTL+ HHGI+EEVFLSLPC + ++GVTHI+
Sbjct: 411 GYTSWAIGLSVSQLASAILRNSNQVHAVSTLVTDHHGIKEEVFLSLPCTLGEDGVTHIVQ 470
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q LT DE L S+A + ++Q+GL
Sbjct: 471 QKLTDDELASLHTSSAMMHKVQEGL 495
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194752187|ref|XP_001958404.1| GF10902 [Drosophila ananassae] gi|190625686|gb|EDV41210.1| GF10902 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/325 (59%), Positives = 254/325 (78%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
D LL+QVA + S K+TVVG GQVGMA +SIL Q + CLID +D+ +GE++DL
Sbjct: 6 DSLLAQVAEVLPSSGHKVTVVGIGQVGMASAFSILAQNVSKEVCLIDVCQDKLQGELMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++P+I + +D A S SR+ I+TAGVR GE+RL LV RN I K++IPK+
Sbjct: 66 QHGSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
+ SPD ILL++SNPVD++TY++WKLSG PKNRVIGSGTNLDS RFR L++Q+LG++P S
Sbjct: 126 EYSPDTILLMVSNPVDIMTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+IIGEHGDSSVPVWSGVN+AGV L+ELNPT+GT +D E + LH VV+SAYEVIKLK
Sbjct: 186 HGWIIGEHGDSSVPVWSGVNIAGVRLRELNPTLGTGEDPEKWNELHKQVVDSAYEVIKLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYTSWA+GLS AS++ +L NT+ + AVST + G HGI+++VFLSLPC++ NGVT ++
Sbjct: 246 GYTSWAIGLSTASLASAILRNTSSVAAVSTSVLGEHGIDKDVFLSLPCILNANGVTSVVK 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q LTP E E+L+KSA ++ +Q GL
Sbjct: 306 QILTPTEIEQLQKSATIMADVQAGL 330
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169552|gb|EFN62194.1| L-lactate dehydrogenase [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/325 (59%), Positives = 254/325 (78%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
D+LL+ V S+ + KITVVG GQVGMAC +SILT + S+ LID D+ KGEMLDL
Sbjct: 6 DQLLTTVTESVPNGRNKITVVGVGQVGMACAFSILTNHVSSDVVLIDVMVDKLKGEMLDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ F+++ K+ + +D A +E S + I+TAG R GETRL LV RN IFK +IP++
Sbjct: 66 QHGSAFMKNAKVNASTDYAATENSSLCIVTAGARQREGETRLDLVQRNTDIFKGIIPQLV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
K SP+ ILLI+SNPVD+LTY++WKLSG PKN+VIGSGTNLDS RFR LL+Q+L ++P S
Sbjct: 126 KYSPNTILLIVSNPVDILTYVAWKLSGLPKNKVIGSGTNLDSARFRFLLSQRLNVAPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+IIGEHGD+SVPVWSGVNVAGV L++ + +GT++D E++ LH VV SAYEVIKLK
Sbjct: 186 HGWIIGEHGDTSVPVWSGVNVAGVRLRDFDEHVGTDKDKEHWNELHKQVVESAYEVIKLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYTSWA+GLSV+ ++ +L N+N++HAVST++ G+HGI+EEVFLSLPC + ++GVTHI+
Sbjct: 246 GYTSWAIGLSVSHLASAILRNSNQVHAVSTMVTGYHGIKEEVFLSLPCTLGEDGVTHIVR 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q LT DE L KSAA + ++Q+GL
Sbjct: 306 QKLTDDELALLHKSAAMMHEVQQGL 330
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 488 | ||||||
| FB|FBgn0001258 | 332 | ImpL3 "Ecdysone-inducible gene | 0.665 | 0.978 | 0.596 | 2e-104 | |
| UNIPROTKB|P00337 | 333 | LDHB "L-lactate dehydrogenase | 0.665 | 0.975 | 0.581 | 9.8e-103 | |
| UNIPROTKB|E2R761 | 334 | LDHB "Uncharacterized protein" | 0.665 | 0.973 | 0.585 | 9.8e-103 | |
| UNIPROTKB|P07195 | 334 | LDHB "L-lactate dehydrogenase | 0.665 | 0.973 | 0.585 | 9.8e-103 | |
| MGI|MGI:96763 | 334 | Ldhb "lactate dehydrogenase B" | 0.665 | 0.973 | 0.585 | 9.8e-103 | |
| RGD|2997 | 334 | Ldhb "lactate dehydrogenase B" | 0.665 | 0.973 | 0.585 | 1.3e-102 | |
| UNIPROTKB|P00336 | 334 | LDHB "L-lactate dehydrogenase | 0.665 | 0.973 | 0.588 | 2e-102 | |
| ZFIN|ZDB-GENE-991026-6 | 334 | ldhba "lactate dehydrogenase B | 0.672 | 0.982 | 0.580 | 3.3e-102 | |
| UNIPROTKB|Q5E9B1 | 334 | LDHB "L-lactate dehydrogenase | 0.665 | 0.973 | 0.582 | 4.2e-102 | |
| UNIPROTKB|F1PIB3 | 356 | LDHB "L-lactate dehydrogenase" | 0.692 | 0.949 | 0.563 | 1.1e-101 |
| FB|FBgn0001258 ImpL3 "Ecdysone-inducible gene L3" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 194/325 (59%), Positives = 252/325 (77%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
D LL+QVA + S K+T+VG GQVGMA +SIL Q + CLID D+ +GE++DL
Sbjct: 6 DSLLAQVAEVLPSSGHKVTIVGIGQVGMASAFSILAQNVSKEVCLIDVCADKLQGELMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++P+I + +D A S SR+ I+TAGVR GE+RL LV RN I K++IPK+
Sbjct: 66 QHGSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRLSLVQRNTDILKNIIPKLV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
+ SPD ILL++SNPVD++TY++WKLSG PKNRVIGSGTNLDS RFR L++Q+LG++P S
Sbjct: 126 EYSPDTILLMVSNPVDIMTYVAWKLSGLPKNRVIGSGTNLDSSRFRFLMSQRLGVAPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+IIGEHGDSSVPVWSGVN+AGV L+ELNP +GT +D E + LH VV+SAYEVIKLK
Sbjct: 186 HGWIIGEHGDSSVPVWSGVNIAGVRLRELNPILGTGEDPEKWNELHKQVVDSAYEVIKLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYTSWA+GLS AS++ +L NT+ + AVST + G HGI+++VFLSLPCV+ NGVT ++
Sbjct: 246 GYTSWAIGLSTASLASAILRNTSSVAAVSTSVLGEHGIDKDVFLSLPCVLNANGVTSVVK 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q LTP E E+L+KSA +S +Q GL
Sbjct: 306 QILTPTEVEQLQKSANIMSDVQAGL 330
|
|
| UNIPROTKB|P00337 LDHB "L-lactate dehydrogenase B chain" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 189/325 (58%), Positives = 254/325 (78%)
Query: 163 DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222
++L++ VA P KITVVG GQVGMAC SIL +G+ L+D ED+ KGEM+DL
Sbjct: 6 EKLITPVAAGSTVPSNKITVVGVGQVGMACAISILGKGLCDELALVDVLEDKLKGEMMDL 65
Query: 223 QHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIA 282
QHG+ FL++ KI + D A++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 QHGSLFLQTHKIVADKDYAVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIV 125
Query: 283 KGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 342
K SP+C +L++SNPVD+LTY++WKLSG PK+RVIGSG NLD+ RFR L+A++LG+ P S
Sbjct: 126 KYSPNCTILVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDTARFRYLMAERLGIHPTSC 185
Query: 343 HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT++D+EN+ +H VV SAYEVI+LK
Sbjct: 186 HGWILGEHGDSSVAVWSGVNVAGVSLQELNPAMGTDKDSENWKEVHKQVVESAYEVIRLK 245
Query: 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
GYT+WA+GLSVA + T+L N ++H+VSTL++G +GIE +VFLSLPCV++ +G+T +IN
Sbjct: 246 GYTNWAIGLSVAELCETMLKNLYRVHSVSTLVKGTYGIENDVFLSLPCVLSASGLTSVIN 305
Query: 463 QNLTPDEAEKLRKSAATISQIQKGL 487
Q L DE +L+KSA T+ IQK L
Sbjct: 306 QKLKDDEVAQLKKSADTLWSIQKDL 330
|
|
| UNIPROTKB|E2R761 LDHB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 191/326 (58%), Positives = 254/326 (77%)
Query: 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA + P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 6 EKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD 65
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 125
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S
Sbjct: 126 VKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSS 185
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKL
Sbjct: 186 CHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKL 245
Query: 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
KGYT+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +I
Sbjct: 246 KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI 305
Query: 462 NQNLTPDEAEKLRKSAATISQIQKGL 487
NQ L DE +L+KSA T+ IQK L
Sbjct: 306 NQKLKDDEVAQLKKSADTLWDIQKDL 331
|
|
| UNIPROTKB|P07195 LDHB "L-lactate dehydrogenase B chain" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 191/326 (58%), Positives = 254/326 (77%)
Query: 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA + P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 6 EKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD 65
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 125
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S
Sbjct: 126 VKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSS 185
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKL
Sbjct: 186 CHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKL 245
Query: 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
KGYT+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +I
Sbjct: 246 KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI 305
Query: 462 NQNLTPDEAEKLRKSAATISQIQKGL 487
NQ L DE +L+KSA T+ IQK L
Sbjct: 306 NQKLKDDEVAQLKKSADTLWDIQKDL 331
|
|
| MGI|MGI:96763 Ldhb "lactate dehydrogenase B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
Identities = 191/326 (58%), Positives = 254/326 (77%)
Query: 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA + P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 6 EKLIASVADDEAAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD 65
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 125
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K SPDC ++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S
Sbjct: 126 VKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSS 185
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV+SAYEVIKL
Sbjct: 186 CHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKL 245
Query: 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
KGYT+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +I
Sbjct: 246 KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI 305
Query: 462 NQNLTPDEAEKLRKSAATISQIQKGL 487
NQ L DE +LRKSA T+ IQK L
Sbjct: 306 NQKLKDDEVAQLRKSADTLWDIQKDL 331
|
|
| RGD|2997 Ldhb "lactate dehydrogenase B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
Identities = 191/326 (58%), Positives = 254/326 (77%)
Query: 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA + P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 6 EKLIAPVADDETAVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD 65
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 125
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K SPDC ++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S
Sbjct: 126 VKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSS 185
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV+SAYEVIKL
Sbjct: 186 CHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKL 245
Query: 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
KGYT+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +I
Sbjct: 246 KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI 305
Query: 462 NQNLTPDEAEKLRKSAATISQIQKGL 487
NQ L DE +LRKSA T+ IQK L
Sbjct: 306 NQKLKDDEVAQLRKSADTLWDIQKDL 331
|
|
| UNIPROTKB|P00336 LDHB "L-lactate dehydrogenase B chain" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 192/326 (58%), Positives = 253/326 (77%)
Query: 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA + P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 6 EKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMD 65
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 125
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S
Sbjct: 126 VKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSS 185
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKL
Sbjct: 186 CHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKL 245
Query: 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
KGYT+WA+GLSVA + ++L N ++IH VST++QG +GIE EVFLSLPCV+ G+T +I
Sbjct: 246 KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIENEVFLSLPCVLNARGLTSVI 305
Query: 462 NQNLTPDEAEKLRKSAATISQIQKGL 487
NQ L DE +L+ SA T+ IQK L
Sbjct: 306 NQKLKDDEVAQLKNSADTLWGIQKDL 331
|
|
| ZFIN|ZDB-GENE-991026-6 ldhba "lactate dehydrogenase Ba" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 191/329 (58%), Positives = 253/329 (76%)
Query: 160 STVDRLLSQVAPS-IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE 218
S + +L++ +A E P K+T+VG GQVGMAC S+L + + L+D EDR KGE
Sbjct: 3 SVMQKLITPLASGPAEPPRNKVTIVGVGQVGMACAVSVLLRELADELALVDVVEDRLKGE 62
Query: 219 MLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLI 278
MLDLQHG+ FL++PKI + D +++ SRIV++TAGVR GE+RL LV RNV IFK +I
Sbjct: 63 MLDLQHGSLFLKTPKIVADKDYSVTANSRIVVVTAGVRQQEGESRLNLVQRNVNIFKHII 122
Query: 279 PKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 338
P+I K SPDCIL+++SNPVDVLTY++WKLSG PK+RVIGSGTNLDS RFR ++A+KLG+
Sbjct: 123 PQIVKYSPDCILVVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRYIMAEKLGIH 182
Query: 339 PESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398
S +G+I+GEHGD+SVPVWSG NVAGV+L++LNP IGT++D EN+ H VV+SAYEV
Sbjct: 183 ASSFNGYILGEHGDTSVPVWSGANVAGVSLQKLNPDIGTDKDAENWKEAHKMVVDSAYEV 242
Query: 399 IKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVT 458
IKLKGYT+WA+GLSVA ++ TL+ N N++H VST+++G +GI EEV+LSLPCV+ +GV
Sbjct: 243 IKLKGYTNWAIGLSVADLTETLVKNLNRVHPVSTMVKGMYGINEEVYLSLPCVLNSSGVG 302
Query: 459 HIINQNLTPDEAEKLRKSAATISQIQKGL 487
+IN LT E +L+ SA T+ IQK L
Sbjct: 303 SVINMTLTDGEIGQLKSSADTLWGIQKDL 331
|
|
| UNIPROTKB|Q5E9B1 LDHB "L-lactate dehydrogenase B chain" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 190/326 (58%), Positives = 253/326 (77%)
Query: 163 DRLLSQVAPS-IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 6 EKLIAPVAEEETRIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMD 65
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 66 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 125
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S
Sbjct: 126 VKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSS 185
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN+ +H VV SAYEVIKL
Sbjct: 186 CHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKL 245
Query: 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
KGYT+WA+GLSVA + ++L N ++IH VST+++G +GIE EVFLSLPC++ G+T +I
Sbjct: 246 KGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVI 305
Query: 462 NQNLTPDEAEKLRKSAATISQIQKGL 487
NQ L +E +L+KSA T+ IQK L
Sbjct: 306 NQKLKDEEVAQLKKSADTLWGIQKDL 331
|
|
| UNIPROTKB|F1PIB3 LDHB "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
Identities = 194/344 (56%), Positives = 259/344 (75%)
Query: 145 CTYSILTQTMARDAVSTVDRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYS 203
C Y + TMA + ++L++ VA + P+ KITVVG GQVGMAC SIL + +
Sbjct: 15 CIYEVYG-TMA----TLKEKLIAPVAEEEAAIPNNKITVVGVGQVGMACAISILGKSLAD 69
Query: 204 NFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETR 263
L+D ED+ KGEM+DLQHG+ FL++PKI + D +++ S+IV++TAGVR GE+R
Sbjct: 70 ELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESR 129
Query: 264 LQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLD 323
L LV RNV +FK +IP+I K SPDCI++++SNPVD+LTY++WKLSG PK+RVIGSG NLD
Sbjct: 130 LNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLD 189
Query: 324 SMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTEN 383
S RFR L+A+KLG+ P S HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT+ D+EN
Sbjct: 190 SARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSEN 249
Query: 384 FVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEE 443
+ +H SAYEVIKLKGYT+WA+GLSVA + ++L N ++IH VST+++G +GIE E
Sbjct: 250 WKEVHLIFFLSAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENE 309
Query: 444 VFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
VFLSLPC++ G+T +INQ L DE +L+KSA T+ IQK L
Sbjct: 310 VFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 353
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9PVK4 | LDHBA_DANRE | 1, ., 1, ., 1, ., 2, 7 | 0.5805 | 0.6721 | 0.9820 | yes | N/A |
| Q5E9B1 | LDHB_BOVIN | 1, ., 1, ., 1, ., 2, 7 | 0.5882 | 0.6536 | 0.9550 | yes | N/A |
| Q95028 | LDH_DROME | 1, ., 1, ., 1, ., 2, 7 | 0.5969 | 0.6659 | 0.9789 | yes | N/A |
| P00336 | LDHB_PIG | 1, ., 1, ., 1, ., 2, 7 | 0.5944 | 0.6536 | 0.9550 | yes | N/A |
| P00337 | LDHB_CHICK | 1, ., 1, ., 1, ., 2, 7 | 0.5815 | 0.6659 | 0.9759 | yes | N/A |
| A5A6N7 | LDHB_PANTR | 1, ., 1, ., 1, ., 2, 7 | 0.5913 | 0.6536 | 0.9550 | yes | N/A |
| P42123 | LDHB_RAT | 1, ., 1, ., 1, ., 2, 7 | 0.6025 | 0.6393 | 0.9341 | yes | N/A |
| Q9XT86 | LDHB_MONDO | 1, ., 1, ., 1, ., 2, 7 | 0.5961 | 0.6393 | 0.9341 | yes | N/A |
| P16125 | LDHB_MOUSE | 1, ., 1, ., 1, ., 2, 7 | 0.5858 | 0.6659 | 0.9730 | yes | N/A |
| P07195 | LDHB_HUMAN | 1, ., 1, ., 1, ., 2, 7 | 0.5913 | 0.6536 | 0.9550 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 488 | |||
| cd05293 | 312 | cd05293, LDH_1, A subgroup of L-lactate dehydrogen | 1e-178 | |
| PLN02602 | 350 | PLN02602, PLN02602, lactate dehydrogenase | 1e-141 | |
| TIGR01771 | 299 | TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | 1e-137 | |
| cd05292 | 308 | cd05292, LDH_2, A subgroup of L-lactate dehydrogen | 1e-132 | |
| cd00300 | 300 | cd00300, LDH_like, L-lactate dehydrogenase-like en | 1e-118 | |
| PRK00066 | 315 | PRK00066, ldh, L-lactate dehydrogenase; Reviewed | 1e-116 | |
| cd05291 | 306 | cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd | 1e-114 | |
| COG0039 | 313 | COG0039, Mdh, Malate/lactate dehydrogenases [Energ | 1e-106 | |
| PRK06223 | 307 | PRK06223, PRK06223, malate dehydrogenase; Reviewed | 3e-87 | |
| cd01339 | 300 | cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik | 1e-83 | |
| cd05290 | 307 | cd05290, LDH_3, A subgroup of L-lactate dehydrogen | 4e-79 | |
| cd00650 | 263 | cd00650, LDH_MDH_like, NAD-dependent, lactate dehy | 3e-73 | |
| cd05294 | 309 | cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas | 7e-58 | |
| pfam00056 | 142 | pfam00056, Ldh_1_N, lactate/malate dehydrogenase, | 2e-55 | |
| PTZ00082 | 321 | PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi | 2e-53 | |
| TIGR01763 | 305 | TIGR01763, MalateDH_bact, malate dehydrogenase, NA | 5e-50 | |
| PTZ00117 | 319 | PTZ00117, PTZ00117, malate dehydrogenase; Provisio | 6e-44 | |
| pfam02866 | 173 | pfam02866, Ldh_1_C, lactate/malate dehydrogenase, | 5e-32 | |
| cd01337 | 310 | cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma | 5e-16 | |
| TIGR01772 | 312 | TIGR01772, MDH_euk_gproteo, malate dehydrogenase, | 6e-16 | |
| cd00704 | 323 | cd00704, MDH, Malate dehydrogenase | 3e-14 | |
| PTZ00325 | 321 | PTZ00325, PTZ00325, malate dehydrogenase; Provisio | 7e-13 | |
| TIGR01759 | 323 | TIGR01759, MalateDH-SF1, malate dehydrogenase | 2e-12 | |
| PLN00106 | 323 | PLN00106, PLN00106, malate dehydrogenase | 2e-11 | |
| PRK05086 | 312 | PRK05086, PRK05086, malate dehydrogenase; Provisio | 3e-11 | |
| cd01336 | 325 | cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an | 5e-07 | |
| cd01338 | 322 | cd01338, MDH_choloroplast_like, Chloroplast-like m | 2e-06 | |
| TIGR01756 | 313 | TIGR01756, LDH_protist, lactate dehydrogenase | 3e-06 | |
| TIGR01758 | 324 | TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- | 2e-05 | |
| TIGR01757 | 387 | TIGR01757, Malate-DH_plant, malate dehydrogenase, | 0.003 |
| >gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 502 bits (1296), Expect = e-178
Identities = 191/308 (62%), Positives = 250/308 (81%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+TVVG GQVGMAC SIL +G+ L+D ED+ KGE +DLQHG+ FL++PKIE+
Sbjct: 5 KVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADK 64
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
D +++ S++VI+TAG R GE+RL LV RNV IFK +IPK+ K SP+ ILL++SNPVD
Sbjct: 65 DYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD 124
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
++TY++WKLSG PK+RVIGSG NLDS RFR L+A++LG++P SVHG+IIGEHGDSSVPVW
Sbjct: 125 IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGEHGDSSVPVW 184
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
SGVNVAGV L++LNP IGT++D E + +H VV+SAYEVIKLKGYTSWA+GLSVA +
Sbjct: 185 SGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVD 244
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
+L NT ++H+VSTL++G HGIE+EVFLSLPC++ +NG+TH+I Q LT +E EKL+KSA
Sbjct: 245 AILRNTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSAD 304
Query: 479 TISQIQKG 486
T+ ++QK
Sbjct: 305 TLWEVQKQ 312
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312 |
| >gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-141
Identities = 170/336 (50%), Positives = 226/336 (67%), Gaps = 2/336 (0%)
Query: 154 MARDAVSTVDRLLSQVAPSIESPDQ-KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212
D + + +P + K++VVG G VGMA +ILTQ + L+D N
Sbjct: 13 GGLDLSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72
Query: 213 DRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVK 272
D+ +GEMLDLQH A FL KI + +D A++ GS + I+TAG R + GE+RL L+ RNV
Sbjct: 73 DKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVA 132
Query: 273 IFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLA 332
+F+ +IP++AK SPD ILLI+SNPVDVLTY++WKLSGFP NRVIGSGTNLDS RFR L+A
Sbjct: 133 LFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIA 192
Query: 333 QKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVV 392
L ++ + V +I+GEHGDSSV +WS V+V GV + + E +H VV
Sbjct: 193 DHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVV 252
Query: 393 NSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGI-EEEVFLSLPCV 451
+SAYEVIKLKGYTSWA+G SVAS+ +LL + +IH VS L +G HGI E +VFLSLP
Sbjct: 253 DSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQ 312
Query: 452 MADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
+ NGV ++N +LT +EAE+LRKSA T+ ++Q L
Sbjct: 313 LGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQSQL 348
|
Length = 350 |
| >gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 396 bits (1021), Expect = e-137
Identities = 139/299 (46%), Positives = 200/299 (66%), Gaps = 2/299 (0%)
Query: 182 VVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA 241
++GAG VG + +++L QGI LID N+D+ +GE +DLQH A FL +PK D +
Sbjct: 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYS 60
Query: 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLT 301
+ + +V+ITAG GETRL+LV RNV+I K ++P++ K D I L+ +NPVD+LT
Sbjct: 61 DCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILT 120
Query: 302 YISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGV 361
Y++WKLSGFPKNRVIGSGT LD+ R R LLA+KLG+ P+SVH +IIGEHGDS VPVWS
Sbjct: 121 YVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVWSSA 180
Query: 362 NVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLL 421
+ GV L + GTE D + + +V ++AYE+I KG T + +G++VA I +L
Sbjct: 181 TIGGVPLLDYLKAKGTETDLDLE-EIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAIL 239
Query: 422 NNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATI 480
++ N++ VS + G +GI ++V++ +P V+ NGV II L+ +E E +KSA T+
Sbjct: 240 HDENRVLPVSAYLDGEYGI-KDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETL 297
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299 |
| >gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-132
Identities = 145/309 (46%), Positives = 207/309 (66%), Gaps = 2/309 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+ +VGAG VG Y++L +G+ S L+D N+ + +GE +DL HG PF++ +I +G
Sbjct: 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG- 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
D A +G+ +V+ITAG GETRL L+ RNV IFK++IP+I K +PD ILL+++NPVD
Sbjct: 61 DYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
VLTY+++KLSG P NRVIGSGT LD+ RFR LL + LG+ P SVH +IIGEHGDS V VW
Sbjct: 121 VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEHGDSEVAVW 180
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
S N+ GV L E G D E + +V N+AYE+I+ KG T +A+GL++A I
Sbjct: 181 SSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIVE 240
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
+L + N + VS+L+ G +GI ++V LSLPC++ +GV ++ L+ +E E LR SA
Sbjct: 241 AILRDENSVLTVSSLLDGQYGI-KDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAE 299
Query: 479 TISQIQKGL 487
+ + + L
Sbjct: 300 VLKEAIESL 308
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308 |
| >gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Score = 350 bits (899), Expect = e-118
Identities = 134/306 (43%), Positives = 196/306 (64%), Gaps = 6/306 (1%)
Query: 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD 239
IT++GAG VG A ++++ +G+ S L+D NE++ KG+ LDL H + FL + I G D
Sbjct: 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD 60
Query: 240 IAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299
A + + IV+ITAG GETRL L++RN I + +I + K PD I+L++SNPVD+
Sbjct: 61 YADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDI 120
Query: 300 LTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWS 359
LTY++ KLSG PKNRVIGSGT LDS RFR LLA+KL + P+SVH +++GEHGDS V WS
Sbjct: 121 LTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEHGDSQVVAWS 180
Query: 360 GVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHT 419
V G+ L+EL P + + +V S YE+I+LKG T++ + ++A I +
Sbjct: 181 TATVGGLPLEELAPF-----TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKS 235
Query: 420 LLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479
+L + ++ VS + +G +GI E+V LS+P V+ GV I+ LT DE KL+KSA
Sbjct: 236 ILLDERRVLPVSAVQEGQYGI-EDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEA 294
Query: 480 ISQIQK 485
+ ++
Sbjct: 295 LKEVLN 300
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 343 bits (883), Expect = e-116
Identities = 132/310 (42%), Positives = 198/310 (63%), Gaps = 3/310 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ +VG G VG + Y+++ QGI +ID N+++ +G+ +DL H PF KI +G
Sbjct: 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAG 66
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D + + + +V+ITAG GETRL LV++N+KIFK ++ ++ D I L+ SNPV
Sbjct: 67 -DYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV 125
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WKLSGFPK RVIGSGT+LDS RFR +L++KL + P SVH +IIGEHGD+ PV
Sbjct: 126 DILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPV 185
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS NVAGV L+E + D E+ + +V ++AYE+I+ KG T + + +++A I+
Sbjct: 186 WSHANVAGVPLEEYLEENE-QYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMALARIT 244
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+LNN N + VS ++G +G EE+V++ +P V+ NG+ I+ L DE +K SA
Sbjct: 245 KAILNNENAVLPVSAYLEGQYG-EEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSA 303
Query: 478 ATISQIQKGL 487
+ +I
Sbjct: 304 DVLKEIMDEA 313
|
Length = 315 |
| >gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-114
Identities = 134/312 (42%), Positives = 193/312 (61%), Gaps = 11/312 (3%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
+K+ ++GAG VG + YS++ QGI LID NE++ +GE LDL+ FL SP KI++
Sbjct: 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA 60
Query: 237 G--SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294
G SD ++ IV+ITAG GETRL L+++N KI K ++PKI D I L+ S
Sbjct: 61 GDYSDCKDAD---IVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117
Query: 295 NPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSS 354
NPVDV+TY+ KLSG PKNRVIG+GT+LD+ R R LA+KL + P SVH +++GEHGDS
Sbjct: 118 NPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQ 177
Query: 355 VPVWSGVNVAGVTLKELNPTIGTEQDTE-NFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413
WS V V G L +L + + +E + + DV + YE+I KG T + + ++
Sbjct: 178 FVAWSTVTVGGKPLLDL---LKEGKLSELDLDEIEEDVRKAGYEIINGKGATYYGIATAL 234
Query: 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKL 473
A I +LN+ N I VS + G +G E++V++ +P ++ NGV +I +LT +E EK
Sbjct: 235 ARIVKAILNDENAILPVSAYLDGEYG-EKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKF 293
Query: 474 RKSAATISQIQK 485
KSA I + K
Sbjct: 294 EKSADIIKENIK 305
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306 |
| >gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-106
Identities = 138/304 (45%), Positives = 192/304 (63%), Gaps = 7/304 (2%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESG 237
K+ V+GAG VG + + +L QG+ S LID NE++ +G LDL H A L S KI
Sbjct: 2 KVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D +G+ IV+ITAGV G TRL L+++N KI KD+ IAK +PD I+L+++NPV
Sbjct: 62 GDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTYI+ K SGFPKNRVIGSGT LDS RFR LA+KLG+SP+ VH ++IGEHGD+ VP+
Sbjct: 122 DILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEHGDTMVPL 181
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY-TSWALGLSVASI 416
WS V G L+EL TE+D E + V N+ E+I+ KG T + ++A +
Sbjct: 182 WSQATVGGKPLEELLKED-TEEDLEELIE---RVRNAGAEIIEAKGAGTYYGPAAALARM 237
Query: 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476
+L + ++ VS + G +G+ E+V+ +P V+ NGV I+ L+ DE EKL KS
Sbjct: 238 VEAILRDEKRVLPVSVYLDGEYGV-EDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKS 296
Query: 477 AATI 480
A +
Sbjct: 297 AEEL 300
|
Length = 313 |
| >gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 3e-87
Identities = 100/306 (32%), Positives = 160/306 (52%), Gaps = 12/306 (3%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESG 237
KI+++GAG VG + + + + L D E +G+ LD+ AP KI
Sbjct: 4 KISIIGAGNVGATLAHLLALKE-LGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGT 62
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D GS +V+ITAGV G +R L+ N KI KD+ I K +PD I+++++NPV
Sbjct: 63 NDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV 122
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D +TY++ K SGFPKNRVIG LDS RFR +A++L +S + V F++G HGDS VP+
Sbjct: 123 DAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGHGDSMVPL 182
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVAS 415
V G+ L++L ++ + V E++ L G +A S+A
Sbjct: 183 VRYSTVGGIPLEDLLS----KEKLDEIV---ERTRKGGAEIVGLLKTGSAYYAPAASIAE 235
Query: 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475
+ +L + ++ S ++G +G+ ++V++ +P + NGV II L +E K
Sbjct: 236 MVEAILKDKKRVLPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKIIELELDDEEKAAFDK 294
Query: 476 SAATIS 481
S +
Sbjct: 295 SVEAVK 300
|
Length = 307 |
| >gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 1e-83
Identities = 101/305 (33%), Positives = 171/305 (56%), Gaps = 12/305 (3%)
Query: 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESGS 238
I+++GAG VG + + + + L+D E +G+ LD+ AP L S K+ +
Sbjct: 1 ISIIGAGNVGATLAQLLALKEL-GDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTN 59
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
D GS +V+ITAG+ G +R L+ N KI K++ I K +P+ I+++++NP+D
Sbjct: 60 DYEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD 119
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
V+TY+++K SGFP+NRVIG LDS RFR +A++LG+S + V ++G HGD+ VP+
Sbjct: 120 VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGHGDTMVPLP 179
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTS--WALGLSVASI 416
V G+ L EL T+++ + V N E++ L S +A ++A +
Sbjct: 180 RYSTVGGIPLTELI----TKEEIDEIVE---RTRNGGAEIVNLLKTGSAYYAPAAAIAEM 232
Query: 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476
+L + ++ S ++G +GI +++F+ +P V+ NGV II +LT +E E KS
Sbjct: 233 VEAILKDKKRVLPCSAYLEGEYGI-KDIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKS 291
Query: 477 AATIS 481
++
Sbjct: 292 VESVK 296
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300 |
| >gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 4e-79
Identities = 113/309 (36%), Positives = 173/309 (55%), Gaps = 8/309 (2%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP--KIES 236
K+ V+GAG VG A L G++S LID NE +GE LD H S KI +
Sbjct: 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA 60
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGET--RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294
G D + I++ITAG G T RL L N KI ++++ I K + + ++++I+
Sbjct: 61 G-DYDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119
Query: 295 NPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSS 354
NP+D+ YI+ +P N+VIG+GT LD+ R R ++A K G+ P++V G+++GEHG +
Sbjct: 120 NPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEHGSHA 179
Query: 355 VPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414
PVWS VN+AG+ L EL G E ++ + +VV +AY+V KG+T+ + S +
Sbjct: 180 FPVWSLVNIAGLPLDELEALFGKEPIDKDELL--EEVVQAAYDVFNRKGWTNAGIAKSAS 237
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
+ +L + I V TL+ G +G+ +V LSLP V+ G+ ++ L E EKL
Sbjct: 238 RLIKAILLDERSILPVCTLLSGEYGL-SDVALSLPTVIGAKGIERVLEIPLDEWELEKLH 296
Query: 475 KSAATISQI 483
KSA I +
Sbjct: 297 KSAKAIRET 305
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307 |
| >gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 3e-73
Identities = 109/310 (35%), Positives = 156/310 (50%), Gaps = 51/310 (16%)
Query: 180 ITVVGA-GQVGMACTYSILTQGIYS--NFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES 236
I V+GA G VG A + + + L D +E++ KG +DLQ L K+
Sbjct: 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60
Query: 237 GSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
D + + +VIITAGV G RL L+ RNV I K++ I K SPD ++++SN
Sbjct: 61 TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120
Query: 296 PVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSV 355
PVD++TY+ W+ SG PK +VIG GT LD +RFR +LA+KLG+ P+ V +I+GEHG S V
Sbjct: 121 PVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKLGVDPDDVKVYILGEHGGSQV 179
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415
P WS V +A S+A
Sbjct: 180 PDWSTVRIA----------------------------------------------TSIAD 193
Query: 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475
+ +LLN+ +I V G GI ++V +S+PC++ NGV I LT E EKL+K
Sbjct: 194 LIRSLLNDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQK 253
Query: 476 SAATISQIQK 485
SA T+ + +
Sbjct: 254 SADTLKKELE 263
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263 |
| >gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 7e-58
Identities = 110/307 (35%), Positives = 171/307 (55%), Gaps = 11/307 (3%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLI--DSNEDRCKGEMLDLQHG-APFLRSPKI 234
K++++GA G+VG A + + + LI + ++ KG LD+ A +I
Sbjct: 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61
Query: 235 ESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294
+ SD++ GS IVIITAGV G +RL L +N KI K +IA+ +PD +L+++
Sbjct: 62 KISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT 121
Query: 295 NPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSS 354
NPVDV+TY + K SGF KNRV G GT+LDS+RF+V +A+ + VH IIGEHGDS
Sbjct: 122 NPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRIIGEHGDSM 181
Query: 355 VPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414
VP+ S ++ G+ +K + D E V V N+ +I LKG + + +++
Sbjct: 182 VPLISSTSIGGIPIKRFPEY--KDFDVEKIVE---TVKNAGQNIISLKGGSEYGPASAIS 236
Query: 415 SISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKL 473
++ T+ N+ +I VST ++G GI +V + +P + NG+ I+ + DE E
Sbjct: 237 NLVRTIANDERRILTVSTYLEGEIDGI-RDVCIGVPVKLGKNGIEEIVPIEMDDDEREAF 295
Query: 474 RKSAATI 480
RKSA +
Sbjct: 296 RKSAEIV 302
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309 |
| >gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 2e-55
Identities = 69/142 (48%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES 236
K+ VVGA G VG + +++ QG+ L+D N+D+ +G +DL HG+ FL P I
Sbjct: 1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVG 60
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
G D + + +V+ITAGV G TRL L++RN IFKD++P IAK +PD I+L++SNP
Sbjct: 61 GDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120
Query: 297 VDVLTYISWKLSGFPKNRVIGS 318
VD+LTYI+WK+SG P RVIGS
Sbjct: 121 VDILTYIAWKVSGLPPERVIGS 142
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142 |
| >gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 2e-53
Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 16/321 (4%)
Query: 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-K 233
+KI+++G+G +G Y I+ + + + L D ++ +G+ LD+ H S K
Sbjct: 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSK 62
Query: 234 IESGSDIAMSEGSRIVIITAGVRSLVGET-----RLQLVDRNVKIFKDLIPKIAKGSPDC 288
+ ++ GS +VI+TAG+ G++ R L+ N KI ++ I K P+
Sbjct: 63 VIGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA 122
Query: 289 ILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348
+++I+NP+DV+ + + SG PKN+V G LDS R R +A+KLG++P VH +IG
Sbjct: 123 FVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVIG 182
Query: 349 EHGDSSVPVWSGVNVAGVTLKEL--NPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTS 406
HGD VP+ V V G+ L E I E+ E R N+ E++ L G S
Sbjct: 183 AHGDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVER----TRNTGKEIVDLLGTGS 238
Query: 407 --WALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN 464
+A + ++ L + ++ S ++G +G +++++ P V+ NGV II +
Sbjct: 239 AYFAPAAAAIEMAEAYLKDKKRVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKIIELD 297
Query: 465 LTPDEAEKLRKSAATISQIQK 485
LTP+E +K +S + +++
Sbjct: 298 LTPEEQKKFDESIKEVKRLEA 318
|
Length = 321 |
| >gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 5e-50
Identities = 100/316 (31%), Positives = 167/316 (52%), Gaps = 18/316 (5%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIES 236
+KI+V+GAG VG A T L + ++ L+D E +G+ LD+ +P K+
Sbjct: 2 KKISVIGAGFVG-ATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG 60
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
++ A + S IV+ITAG+ G +R L+ N I +++ +I + SP+ I++++SNP
Sbjct: 61 TNNYADTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP 120
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D +TY++W+ SGFPK RVIG LDS RFR +A +LG+S + V ++G HGD+ VP
Sbjct: 121 LDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHGDAMVP 180
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVN-----SAYEVIKLKGYTSWALGL 411
+ VAG+ + +L + E + ++VN SAY +A
Sbjct: 181 LVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLLKQGSAY----------YAPAA 230
Query: 412 SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAE 471
SV + +L + ++ + + G +GI + +++ +P ++ NGV HI L E
Sbjct: 231 SVVEMVEAILKDRKRVLPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIYELKLDQSELA 289
Query: 472 KLRKSAATISQIQKGL 487
L KSA + + K L
Sbjct: 290 LLNKSAKIVDENCKML 305
|
This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305 |
| >gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 6e-44
Identities = 89/307 (28%), Positives = 154/307 (50%), Gaps = 9/307 (2%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESG 237
KI+++GAGQ+G IL + + + L D + +G+ LDL+H + + S I
Sbjct: 7 KISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGT 65
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
++ + S +V+ITAGV+ TR L+ N KI K + + K P+ ++ ++NP+
Sbjct: 66 NNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL 125
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D + + + SG P N++ G LDS RFR LA+KLG+SP V +IG HGD VP+
Sbjct: 126 DCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGHGDLMVPL 185
Query: 358 WSGVNVAGVTLKE-LNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
V G+ L + + TE++ ++ N E++KL KG +A ++
Sbjct: 186 PRYCTVNGIPLSDFVKKGAITEKEINEIIKKTR---NMGGEIVKLLKKGSAFFAPAAAIV 242
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
++ L + ++ S + G + + +F+ +P V+ G+ +I L +E E
Sbjct: 243 AMIEAYLKDEKRVLVCSVYLNGQYNC-KNLFVGVPVVIGGKGIEKVIELELNAEEKELFD 301
Query: 475 KSAATIS 481
KS +I
Sbjct: 302 KSIESIQ 308
|
Length = 319 |
| >gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-32
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKEL-NPTIG-T 377
T LD+ R R LA+K G+ P SV+ ++IGEH + P WS V + L + T
Sbjct: 1 TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60
Query: 378 EQDTENFVRLHADVVNSAYEVIKLK-GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQG 436
+ + E + V N+ YEVI+ K G T++++ + A I+ +L T + +V + G
Sbjct: 61 DWELEELIE---RVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDG 117
Query: 437 HHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATISQ-IQKGL 487
++G ++++ S+P V+ +GV ++ L E EKL KSAA + + I+KG
Sbjct: 118 YYGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGF 170
|
L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173 |
| >gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 5e-16
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 55/270 (20%)
Query: 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI 303
+G+ +V+I AGV G TR L + N I +DL +AK P ++LIISNPV+ I
Sbjct: 67 KGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPI 126
Query: 304 S---WKLSG-FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEH-GDSSVPVW 358
+ K +G + R+ G T LD +R +A+ LGL P V+ +IG H G + +P+
Sbjct: 127 AAEVLKKAGVYDPKRLFGV-TTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTILPLL 185
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFV-RLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
S P +++ E R + EV+K K A LS+A
Sbjct: 186 SQCQP---------PFTFDQEEIEALTHR----IQFGGDEVVKAKAGAGSAT-LSMA--- 228
Query: 418 HTLLNNTNKIHA----VSTLIQGHHGIEEEV--------------FLSLPCVMADNGVT- 458
+A ++L++G G E+ V F + P + NGV
Sbjct: 229 ----------YAGARFANSLLRGLKG-EKGVIECAYVESDVTEAPFFATPVELGKNGVEK 277
Query: 459 HIINQNLTPDEAEKLRKSAATISQ-IQKGL 487
++ L E + L + + + I+KG+
Sbjct: 278 NLGLGKLNDYEKKLLEAALPELKKNIEKGV 307
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310 |
| >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 6e-16
Identities = 86/327 (26%), Positives = 139/327 (42%), Gaps = 38/327 (11%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ V+GA G +G + + Q S L D G DL H P S K SG
Sbjct: 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSH-IPTAASVKGFSG 57
Query: 238 SDIAMS--EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
+ + +G+ +V+I AGV G TR L + N I KDL+ +A+ P ++L+I+N
Sbjct: 58 EEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117
Query: 296 PVDVLTYISW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEH- 350
PV+ I+ K + N++ G T LD +R +A+ G P V+ +IG H
Sbjct: 118 PVNSTVPIAAEVLKKKGVYDPNKLFGV-TTLDIVRANTFVAELKGKDPMEVNVPVIGGHS 176
Query: 351 GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK-GYTSWAL 409
G++ +P+ S + TE E + + N+ EV+K K G S L
Sbjct: 177 GETIIPLISQCP---------GKVLFTEDQLEALIH---RIQNAGTEVVKAKAGAGSATL 224
Query: 410 GLSVASISHTL-----LNNTNKIHAVSTL-IQGHHGIEEEVFLSLPCVMADNGV--THII 461
++ A L L + + + G F + P ++ NGV I
Sbjct: 225 SMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVTEAT---FFATPLLLGKNGVEKRLGI 281
Query: 462 NQNLTPDEAEKLRKSAATISQ-IQKGL 487
+ L+ E + L + + + I+KG
Sbjct: 282 GK-LSSFEEKMLNGALPELKKNIKKGE 307
|
This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312 |
| >gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 18/242 (7%)
Query: 248 IVIITAGVRSLVGETRLQLVDRNVKIFKD---LIPKIAKGSPDCILLIISNPVDVLTYIS 304
+ I+ G R L+ +N KIFK+ + K+AK P +L++ NP + I+
Sbjct: 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAK--PTVKVLVVGNPANTNALIA 136
Query: 305 WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVPVWSGVNV 363
K + + + T LD R + +A+KLG+ V II G H ++ VP S V
Sbjct: 137 LKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVV 196
Query: 364 AGVTLKELNPTI-GTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH--TL 420
G E + E + FV+ V +IK +G +S A + A H
Sbjct: 197 YGPGGTEWVLDLLDEEWLNDEFVK---TVQKRGAAIIKKRGASS-AASAAKAIADHVKDW 252
Query: 421 LNNTNKIHAVSTLI---QGHHGIEEEVFLSLPCVMADNGVTHII-NQNLTPDEAEKLRKS 476
L T VS + +GI + S PC G H++ + L EKL+ +
Sbjct: 253 LFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCT-CKGGGWHVVEDLKLNDWLREKLKAT 311
Query: 477 AA 478
Sbjct: 312 EE 313
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323 |
| >gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 7e-13
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 30/257 (11%)
Query: 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI 303
G+ +V+I AGV G TR L + N I +DL+ +A +P I+ I+SNPV+ I
Sbjct: 75 RGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPI 134
Query: 304 SW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSS-VPVW 358
+ K + ++ G T LD +R R +A+ LG++P V+ ++G H + VP+
Sbjct: 135 AAETLKKAGVYDPRKLFGV-TTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLL 193
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK-GYTSWALGLSVASIS 417
S G++L E E ++ V EV+K K G S L ++ A+
Sbjct: 194 SQ---TGLSLPE-----------EQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAE 239
Query: 418 HTL-----LNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN-LTPDEAE 471
+ L I ++ E F S P + GV ++ L E E
Sbjct: 240 WSTSVLKALRGDKGI-VECAFVES-DMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEE 297
Query: 472 KLRKSAATISQ-IQKGL 487
L + + + I+KGL
Sbjct: 298 LLEAAVPDLKKNIEKGL 314
|
Length = 321 |
| >gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 75/321 (23%), Positives = 128/321 (39%), Gaps = 32/321 (9%)
Query: 179 KITVVGA-GQVGMACTYSILT-------QGIYSNFCLIDSNEDRCKGEMLDLQHGA-PFL 229
++ V GA GQ+G + + I + Q + + I +G ++L+ A P L
Sbjct: 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL 64
Query: 230 RSPKIESGSDIAMS-EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKD---LIPKIAKGS 285
+ + +D + + ++ G R L+ +N KIFK+ + K+AK
Sbjct: 65 A--GVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK-- 120
Query: 286 PDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGF 345
D +L++ NP + I+ K + + + T LD R + LA K G+ V
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNV 180
Query: 346 II-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTEN-FVRLHADVVNSAYEVIKLKG 403
II G H ++ VP A V + + I ++ E F+ V VI+ +G
Sbjct: 181 IIWGNHSNTQVP---DFTHATVDGRPVKEVIKDDKWLEGEFIPT---VQQRGAAVIEARG 234
Query: 404 YTSWALGLSVASISH--TLLNNTNKIHAVST--LIQG-HHGIEEEVFLSLPCVMADNGVT 458
+S A + A+I H + T + VS G +GI E + S P +G
Sbjct: 235 ASS-AASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEW 293
Query: 459 HII-NQNLTPDEAEKLRKSAA 478
I+ L KL +
Sbjct: 294 EIVEGLPLDDFVRGKLDATED 314
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323 |
| >gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI 303
+G+ +VII AGV G TR L + N I K L +AK P+ ++ IISNPV+ I
Sbjct: 85 KGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPI 144
Query: 304 S---WKLSG-FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEH 350
+ K +G + ++ G T LD +R +A+K GL P V ++G H
Sbjct: 145 AAEVLKKAGVYDPKKLFGV-TTLDVVRANTFVAEKKGLDPADVDVPVVGGH 194
|
Length = 323 |
| >gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 16/148 (10%)
Query: 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI 303
EG+ +V+I+AGV G R L + N I K+L+ K+AK P + II+NPV+ I
Sbjct: 68 EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAI 127
Query: 304 S---WKLSG-FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEH-GDSSVPVW 358
+ K +G + KN++ G T LD +R +A+ G P V +IG H G + +P+
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186
Query: 359 SGVNVAGVTLKE-----LNPTI---GTE 378
S V GV+ E L I GTE
Sbjct: 187 S--QVPGVSFTEQEVADLTKRIQNAGTE 212
|
Length = 312 |
| >gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 81/330 (24%), Positives = 130/330 (39%), Gaps = 50/330 (15%)
Query: 179 KITVVGA-GQVGMACTYSILT-------QGIYSNFCLIDSNEDRCKGEMLDLQHGA-PFL 229
++ V GA GQ+ + I Q + + I +G +++LQ A P L
Sbjct: 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLL 63
Query: 230 RSPKIESGSDIAMS-EGSRIVIITAGVRSLVGETRLQLVDRNVKIFK---DLIPKIAKGS 285
+S + + +D + + + I+ + G R L+ NVKIFK + + K AK
Sbjct: 64 KS--VVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAK-- 119
Query: 286 PDCILLIISNPVDVLTYISWKL-SGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG 344
+ +L++ NP + I K PK + T LD R + +A KLG+ V
Sbjct: 120 KNVKVLVVGNPANTNALILLKYAPSIPK-ENFTALTRLDHNRAKSQIALKLGVPVSDVKN 178
Query: 345 FII-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVR----LHAD----VVNSA 395
II G H + P VN A V L G + V+ L+ + V
Sbjct: 179 VIIWGNHSSTQYP---DVNHATVELN------GKGKPAREAVKDDAWLNGEFISTVQKRG 229
Query: 396 YEVIKLKGYTSWALGLSVASIS----HTLLNNTNKIHAVSTLI--QGHHGIEEEVFLSLP 449
VIK + +S +S A H T + VS + G +G+ E + S P
Sbjct: 230 AAVIKARKLSS---AMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFP 286
Query: 450 CVMADNGVTHIINQNLTPDEA--EKLRKSA 477
+ I Q L+ D+ EK+ +A
Sbjct: 287 VTCKNGKWK--IVQGLSIDDFSREKIDATA 314
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325 |
| >gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 44/326 (13%)
Query: 179 KITVVGA-GQVGMACTYSIL-----------TQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226
++ V GA GQ+G YS+L Q + + +G ++L+ A
Sbjct: 4 RVAVTGAAGQIG----YSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCA 59
Query: 227 -PFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKD---LIPKIA 282
P L I ++A + +++ A R G R L+ N KIF + +A
Sbjct: 60 FPLLAEIVITDDPNVAFKDADWALLVGAKPRG-PGMERADLLKANGKIFTAQGKALNDVA 118
Query: 283 KGSPDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
S D +L++ NP + I+ K + P + + T LD R + LA+K G+
Sbjct: 119 --SRDVKVLVVGNPCNTNALIAMKNAPDIPPDN-FTAMTRLDHNRAKSQLAKKAGVPVTD 175
Query: 342 VHGFII-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQD--TENFVRLHADVVNSAYEV 398
V +I G H + P ++ + G E + ++ + F+ V +
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAE----VINDRAWLEDEFIP---TVQKRGAAI 228
Query: 399 IKLKGYTSWALGLSVASISH--TLLNNTNKIHAVSTLI--QGHHGIEEEVFLSLPCVMAD 454
IK +G +S A + A+I H + T + S + G +GI E + S P
Sbjct: 229 IKARGASS-AASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKG 287
Query: 455 NGVTHIINQNLTPDEA--EKLRKSAA 478
G I + L D+ EK+ + A
Sbjct: 288 GGYE--IVEGLEIDDFAREKIDATLA 311
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322 |
| >gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 42/288 (14%)
Query: 213 DRCKGEMLDLQ-----HGAPFLRSPKIE---SGSDIAMSEGSRIVIITAGVRSLVGETRL 264
+R + ++L+ + A + + K+E D A + A V GE R
Sbjct: 28 NRLEALAMELEDCAFPNLAGTIVTTKLEEAFKDIDCAF--------LVASVPLKPGEVRA 79
Query: 265 QLVDRNVKIFK---DLIPKIAKGSPDCILLIISNPVDVLTYISW----KLSGFPKNRVIG 317
L+ +N IFK + + + AK P +L+I NPV+ ++ KLS +N
Sbjct: 80 DLLTKNTPIFKATGEALSEYAK--PTVKVLVIGNPVNTNCLVAMLHAPKLS--AEN--FS 133
Query: 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVPVWSGVNVA-GVTLKELNPTI 375
S LD R +A KL + + ++ ++ G H +S V + +++ +
Sbjct: 134 SLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKNGKHQKVFDEL 193
Query: 376 GTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH--TLLNNTNKIHAVSTL 433
+ +F + + A+++++++G+TS A AS+ H L T +S
Sbjct: 194 CRDYPEPDFFEV---IAQRAWKILEMRGFTS-AASPVKASLQHMKAWLFGTRPGEVLSMG 249
Query: 434 I----QGHHGIEEEVFLSLPCVMADNGVTHII-NQNLTPDEAEKLRKS 476
I +GI+ V S PC + ++G H++ N L P KL ++
Sbjct: 250 IPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQT 297
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313 |
| >gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 24/238 (10%)
Query: 260 GETRLQLVDRNVKIFKD---LIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI 316
G R L+ +NVKIFK+ + K+AK DC +L++ NP + + + +
Sbjct: 90 GMERRDLLSKNVKIFKEQGRALDKLAK--KDCKVLVVGNPANTNALVLSNYAPSIPPKNF 147
Query: 317 GSGTNLDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVP-VWSGVNVAGVTLKELNPT 374
+ T LD R +A++ G+ V II G H + P V G K +
Sbjct: 148 SALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREA 207
Query: 375 IGTEQ-DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS----HTLLNNTNKIHA 429
I + F+ V +I+ + +S LS A + H + T +
Sbjct: 208 IKDDAYLDGEFI---TTVQQRGAAIIRARKLSS---ALSAAKAAVDQMHDWVLGTPEGTF 261
Query: 430 VSTLIQG---HHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484
VS + +G+ + + S P V NG I+ + L D++ + +K A T +++
Sbjct: 262 VSMGVYSDGSPYGVPKGLIFSFP-VTCKNGEWKIV-EGLCVDDSSR-KKLALTAKELE 316
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324 |
| >gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 14/229 (6%)
Query: 260 GETRLQLVDRNVKIFKDLIPKI-AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318
G R L+D N +IF D + A S +C +L++ NP + I+ K + + +
Sbjct: 135 GMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHA 194
Query: 319 GTNLDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVPVWSGVNVAGVTLKELNPTIGT 377
T LD R + LA K G SV I G H + VP + + G KE+ T
Sbjct: 195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGRPAKEV--IKDT 252
Query: 378 EQDTENFVRLHADVVNSAYEVIKLKGYTSWA-LGLSVASISHTLLNNTNKIHAVSTLI-- 434
+ E F V +IK G +S A +S+A +L+ T + ST +
Sbjct: 253 KWLEEEFTPT---VQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYT 309
Query: 435 QGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDE--AEKLRKSAATI 480
G+ +GI E + S+PC +G + +++ D+ E++RKS +
Sbjct: 310 DGNPYGIAEGLVFSMPCRSKGDGDYELAT-DVSMDDFLRERIRKSEDEL 357
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 488 | |||
| KOG1495|consensus | 332 | 100.0 | ||
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 100.0 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| PLN02602 | 350 | lactate dehydrogenase | 100.0 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 100.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 100.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 100.0 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 100.0 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 100.0 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 100.0 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 100.0 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 100.0 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 100.0 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 100.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 100.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 100.0 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 100.0 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 100.0 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 100.0 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 100.0 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 100.0 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 100.0 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 100.0 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 100.0 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 100.0 | |
| PLN00135 | 309 | malate dehydrogenase | 100.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 100.0 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 100.0 | |
| TIGR01756 | 313 | LDH_protist lactate dehydrogenase. This model repr | 100.0 | |
| PLN00106 | 323 | malate dehydrogenase | 100.0 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 100.0 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 100.0 | |
| KOG1494|consensus | 345 | 100.0 | ||
| KOG1496|consensus | 332 | 100.0 | ||
| PRK15076 | 431 | alpha-galactosidase; Provisional | 100.0 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 100.0 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 100.0 | |
| PF02866 | 174 | Ldh_1_C: lactate/malate dehydrogenase, alpha/beta | 100.0 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 100.0 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 100.0 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 100.0 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 99.97 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 99.86 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.33 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.29 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.16 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.16 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.16 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.14 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.12 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.1 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.09 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.99 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.96 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.95 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.92 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.91 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.9 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 98.88 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.84 | |
| KOG2304|consensus | 298 | 98.79 | ||
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.71 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.62 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.52 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.49 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.47 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 98.43 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.4 | |
| PF11975 | 232 | Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term | 98.36 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.27 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.2 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.09 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.04 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.99 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.98 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.98 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.96 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.93 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.91 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.89 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.88 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.88 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.87 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.86 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.84 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.84 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.82 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.78 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 97.76 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.75 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.75 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.74 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.73 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.62 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.55 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.55 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.53 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.51 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.51 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.48 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.48 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.47 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.47 | |
| KOG1683|consensus | 380 | 97.46 | ||
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.45 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 97.4 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 97.39 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.38 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.37 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.32 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.29 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.28 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.28 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.25 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.22 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.21 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 97.18 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.16 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 97.15 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.15 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.15 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.13 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.11 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.09 | |
| PLN00106 | 323 | malate dehydrogenase | 97.05 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.04 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 97.03 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.02 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.97 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.95 | |
| PLN02256 | 304 | arogenate dehydrogenase | 96.93 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.93 | |
| KOG2305|consensus | 313 | 96.91 | ||
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.91 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.9 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.88 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 96.88 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 96.87 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.87 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.79 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.76 | |
| KOG2666|consensus | 481 | 96.74 | ||
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.74 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.72 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.7 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.68 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.68 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.49 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.48 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.47 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.45 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.45 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 96.44 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 96.41 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.4 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 96.38 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 96.37 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.34 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 96.33 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 96.32 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.3 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.23 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 96.22 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 96.22 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.2 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 96.18 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.18 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.16 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.15 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 96.13 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 96.12 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.1 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 96.08 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 96.05 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.05 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.02 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.01 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 96.0 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.0 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.96 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 95.95 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 95.94 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.93 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 95.9 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.89 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 95.86 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.83 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.82 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 95.77 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 95.76 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.76 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.74 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.74 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.72 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.68 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.68 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.68 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.65 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 95.64 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.63 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.62 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.61 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.58 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.58 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.57 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.56 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.56 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 95.55 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.51 | |
| KOG2711|consensus | 372 | 95.51 | ||
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 95.5 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.49 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 95.44 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.42 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 95.41 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.41 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 95.4 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.39 | |
| PLN02712 | 667 | arogenate dehydrogenase | 95.38 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.34 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.31 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 95.3 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.27 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 95.23 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 95.22 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 95.18 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 95.18 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 95.1 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.1 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.09 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.09 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.09 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 95.06 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.05 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.05 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 95.02 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.02 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.01 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 94.99 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.95 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 94.93 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.91 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 94.91 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 94.91 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 94.9 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 94.89 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.88 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 94.85 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 94.82 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 94.82 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 94.81 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.81 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 94.78 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 94.76 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 94.76 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.76 | |
| PLN02494 | 477 | adenosylhomocysteinase | 94.74 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.73 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 94.71 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 94.7 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 94.69 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.68 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.68 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 94.67 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 94.66 | |
| PRK08643 | 256 | acetoin reductase; Validated | 94.66 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.66 | |
| KOG1205|consensus | 282 | 94.64 | ||
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.64 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 94.64 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 94.63 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.62 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.59 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 94.54 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 94.54 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 94.53 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 94.52 | |
| KOG1502|consensus | 327 | 94.52 | ||
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.45 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.44 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.43 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 94.42 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 94.39 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 94.39 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 94.39 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.37 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.37 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 94.36 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 94.33 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.33 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 94.32 | |
| KOG1201|consensus | 300 | 94.3 | ||
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 94.3 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 94.29 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 94.28 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 94.24 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.19 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.18 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.14 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 94.14 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 94.09 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.06 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 94.04 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 94.04 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 93.99 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.99 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 93.98 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.92 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 93.92 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 93.92 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 93.91 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 93.88 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 93.87 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 93.87 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 93.86 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 93.85 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 93.82 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 93.82 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 93.81 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 93.77 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 93.77 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 93.77 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 93.69 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 93.69 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.68 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.67 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 93.63 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 93.6 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 93.59 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 93.58 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.58 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 93.57 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.51 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 93.51 | |
| KOG0409|consensus | 327 | 93.51 | ||
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 93.49 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.45 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 93.44 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.43 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 93.41 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 93.4 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 93.4 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 93.31 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 93.29 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 93.29 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 93.29 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 93.28 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 93.28 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 93.28 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 93.27 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 93.27 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 93.26 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 93.26 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 93.25 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 93.23 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 93.14 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 93.13 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 93.12 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 93.12 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 93.11 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 93.1 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 93.09 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.09 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.08 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 93.08 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.04 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 93.03 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 93.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 92.98 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 92.94 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 92.92 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 92.92 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 92.88 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 92.87 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 92.84 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 92.83 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 92.8 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 92.77 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 92.75 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 92.75 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 92.74 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 92.73 | |
| PRK05717 | 255 | oxidoreductase; Validated | 92.7 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 92.65 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 92.63 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 92.62 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 92.57 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 92.57 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 92.48 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 92.47 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 92.46 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 92.44 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.43 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 92.42 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 92.39 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 92.36 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.33 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 92.33 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 92.3 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 92.25 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 92.22 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 92.18 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.17 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 92.16 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 92.12 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 92.11 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 92.1 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.08 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.06 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 92.05 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 92.05 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 92.05 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 92.04 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 92.02 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 91.95 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 91.93 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 91.93 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 91.91 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 91.9 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 91.88 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 91.87 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 91.86 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.72 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 91.71 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 91.71 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.67 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 91.65 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 91.65 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 91.63 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 91.62 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 91.59 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.57 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 91.52 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 91.52 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.5 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 91.48 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.38 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 91.35 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 91.3 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 91.27 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 91.27 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 91.26 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 91.22 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 91.2 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 91.17 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 91.17 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 91.16 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 91.14 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 91.09 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 91.07 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 91.05 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 90.99 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 90.97 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 90.93 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 90.85 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 90.73 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 90.67 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 90.66 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 90.64 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 90.6 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 90.59 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 90.59 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.58 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 90.57 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 90.54 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 90.5 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 90.46 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 90.45 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 90.42 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 90.29 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 90.27 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 90.2 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 90.18 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 90.15 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 90.12 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 90.11 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 90.05 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 90.04 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 90.0 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 89.97 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 89.93 | |
| KOG1208|consensus | 314 | 89.91 | ||
| PRK12862 | 763 | malic enzyme; Reviewed | 89.91 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 89.9 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 89.81 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 89.8 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 89.64 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.63 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 89.6 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 89.54 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 89.53 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 89.53 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 89.49 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 89.44 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 89.36 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 89.3 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 89.29 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.28 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 89.27 |
| >KOG1495|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-72 Score=541.80 Aligned_cols=327 Identities=59% Similarity=1.006 Sum_probs=314.8
Q ss_pred hHHhhhhccCCCCCCCCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHHHHHHhhhCCCCCCCCceEEEEecccchHHHH
Q psy12825 114 TVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQVGMACT 193 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid~~~~~e~~~~~~~~~~KIaIIGAG~vG~~ia 193 (488)
.++++++++.++.+...+||+|||+|+||||||++||+|+|||
T Consensus 4 ~k~~~~~~~~~~~~~~~~KItVVG~G~VGmAca~siL~k~Lad------------------------------------- 46 (332)
T KOG1495|consen 4 VKSELIANSAEEKEFKHNKITVVGVGQVGMACAISILLKGLAD------------------------------------- 46 (332)
T ss_pred hhhhhhhcccccccccCceEEEEccchHHHHHHHHHHHhhhhh-------------------------------------
Confidence 3488899988776777899999999999999999999998874
Q ss_pred HHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccccCCCcchHhhHhhhHHH
Q psy12825 194 YSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKI 273 (488)
Q Consensus 194 ~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~k~G~~r~dll~~N~~i 273 (488)
||+|+|+++++++|.+|||+|...|...++|..+.||...+++++||+|+|..+++|++|++++++|+.+
T Consensus 47 ----------el~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~i 116 (332)
T KOG1495|consen 47 ----------ELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAGARQSEGESRLDLVQRNVDI 116 (332)
T ss_pred ----------ceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCC
Q psy12825 274 FKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDS 353 (488)
Q Consensus 274 i~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~ 353 (488)
++.+.+.+.+|.|+++++++|||+|+|||+.||.+|||++||||.||+||+.|||++++++||++|.++++||+||||++
T Consensus 117 fK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGEHGdS 196 (332)
T KOG1495|consen 117 FKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGEHGDS 196 (332)
T ss_pred HHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHHHhCCCcccceEEEeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEee
Q psy12825 354 SVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTL 433 (488)
Q Consensus 354 ~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~ 433 (488)
.+|.||.+.+.|.++.++.++.++..+++.|+++.+++.+.+|||++.||+++|++|.+.++++++|+.|++.++||++.
T Consensus 197 sV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTswaIglsva~l~~ail~n~~~i~~Vst~ 276 (332)
T KOG1495|consen 197 SVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSVADLAQAILRNLRRIHPVSTM 276 (332)
T ss_pred cceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCcCceeeeeec
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 434 IQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 434 ~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
..|.||+.+|+|+|+||.++++|+..++..+|+++|.++|++|++.|.++++++
T Consensus 277 ~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~~q~~l 330 (332)
T KOG1495|consen 277 VKGLYGIDDDVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLEAQKSL 330 (332)
T ss_pred cccccCCCCceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999875
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=533.32 Aligned_cols=310 Identities=62% Similarity=1.066 Sum_probs=292.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+.+||+|||||.||+++++.|+.+++.+||+|+|++++++++.++||+|+..+....++..++||++++|||+||+++|.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~ 81 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGA 81 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCC
Confidence 35699999999999999999999999999999999999999999999999865544577777899999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
+++||++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++++++|+|++||||+||.||+.|+++++|+++
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l 161 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERL 161 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
++++++|+++||||||++++|+||+++++|+|+.++........++++++++.+++++++++|++.||+++|++|+++++
T Consensus 162 ~v~~~~v~~~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ 241 (312)
T cd05293 162 GVAPSSVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVAD 241 (312)
T ss_pred CCChhhEEEEEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999988764322223345688999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHH
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQK 485 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~ 485 (488)
++++|+++++.++++|++++|.||+|+|++||+||++|++|++++++++|+++|+++|++|++.|++.++
T Consensus 242 ii~ail~d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~~~~ 311 (312)
T cd05293 242 LVDAILRNTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQK 311 (312)
T ss_pred HHHHHHcCCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=528.05 Aligned_cols=305 Identities=44% Similarity=0.714 Sum_probs=286.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+||+|||||.||+++++.|+.+++.+||+|+|++++.++|.++||.|+..+.. ..++..+.+|++++|||+||+++|.|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 59999999999999999998888888999999999999999999999975432 23444335699999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
|||||+|+|++..|++|+++++++|.++|||++++++|||+|+||+++++.+|+|++||||+||.||++|++++||++++
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~ 160 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLG 160 (313)
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCC-cchhhHHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGY-TSWALGLSVAS 415 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~-t~~s~A~a~~~ 415 (488)
++|++|+++|+||||++++|+||+++++|+|+.++.+. +.+++++++.+++++++++|++.||. ++||+|.++++
T Consensus 161 v~~~~V~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~----~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~ 236 (313)
T COG0039 161 VSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE----DTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALAR 236 (313)
T ss_pred CChhHceeeEeccCCCceEEeeeeeeECCEEHHHHhhc----ccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHH
Confidence 99999999999999999999999999999999998753 23567789999999999999999987 99999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+.++|++|+++++|++++++|+|| ++|+||++||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 237 ~~~ail~d~~~vl~~s~~l~G~yg-~~dv~~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~~i~~~ 307 (313)
T COG0039 237 MVEAILRDEKRVLPVSVYLDGEYG-VEDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKKNIELV 307 (313)
T ss_pred HHHHHHcCCCceEEEEEeecCccC-cCCeEEEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 67899999999999999999999999999999999999999888754
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=525.61 Aligned_cols=302 Identities=37% Similarity=0.628 Sum_probs=283.1
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC--CCcEEEcCCccccCCCcEEEEecccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR--SPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~--~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
||+|||||.||+++|+.|+.+++.+||+|+|++++++++.++||+|...+.. ..++. ++||++++|||+||+++|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-AGDYDDCADADIIVITAGPS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-ECCHHHhCCCCEEEECCCCC
Confidence 8999999999999999999999999999999999999999999999876543 23444 57899999999999999999
Q ss_pred cCCCcc--hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 257 SLVGET--RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 257 ~k~G~~--r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
++||++ |+|++..|+++++++++.|.+++|++++|++|||+|+||+++++.+|||++||||+||.||++|++++||++
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~ 159 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADK 159 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHH
Confidence 999999 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~ 414 (488)
+|++|++|+++||||||++++|+||+++++|.|+.++.+... .++..++++.+++++++++|++.||+++|++|.+++
T Consensus 160 l~v~~~~V~~~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~--~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~ 237 (307)
T cd05290 160 YGVDPKNVTGYVLGEHGSHAFPVWSLVNIAGLPLDELEALFG--KEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSAS 237 (307)
T ss_pred hCCCcccEEEEEEecCCCceEEeeeeeEECCEEHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHH
Confidence 999999999999999999999999999999999988754211 123457889999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
+++++|++|++.++|+|++++|+|| ++|+|||+||+++++|++++++++|+++|+++|++|++.|++.+
T Consensus 238 ~ii~ail~d~~~v~~vsv~~~G~yg-~~~v~~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~~~ 306 (307)
T cd05290 238 RLIKAILLDERSILPVCTLLSGEYG-LSDVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETI 306 (307)
T ss_pred HHHHHHHhCCCeEEEEEEeeCCccC-CCCEEEEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 67899999999999999999999999999999999999999765
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=528.60 Aligned_cols=310 Identities=54% Similarity=0.888 Sum_probs=291.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+||+|||||.||+++++.|+.+++.+||+|+|++++++++.++||+|+..+....+|..++||++++|||+||+++|.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~~ 117 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQ 117 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCCC
Confidence 69999999999999999999999999999999999999999999999976544456666678999999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++++++|||++||||+||.||++|++++||+++|+
T Consensus 118 k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v 197 (350)
T PLN02602 118 IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDV 197 (350)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
++++|+++||||||++++|+||+++++|+|+.++.......++++.++++.+++++++++|++.||+++|++|+++++++
T Consensus 198 ~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii 277 (350)
T PLN02602 198 NAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLV 277 (350)
T ss_pred CccceeeeEEecCCCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876432123555667899999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCC-CceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIE-EEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~-~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|++|+++++|++++++|+||+| .++|+|+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 278 ~ail~d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l~L~~~E~~~l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 278 RSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQSQL 348 (350)
T ss_pred HHHHhcCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999994 7999999999999999999999999999999999999999988765
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=512.72 Aligned_cols=309 Identities=42% Similarity=0.761 Sum_probs=290.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
..+||+|||||.+|+++++.|+..++.+||+|+|++++++++.++|++|+..+.....+. +++|++++|||+||+++|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-AGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-eCCHHHhCCCCEEEEecCC
Confidence 457999999999999999999999999999999999999999999999997544333443 5789999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
|++||++|.|++..|++++++++..+.+++|++|+|++|||+|++++++++++|+|++||||+||.||+.|+++++|+++
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~l 163 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKL 163 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
|++|++|+++||||||++++|+||+++++|.|+.++.... ..+++++++++.++++++++++++.||+++|++|+++++
T Consensus 164 ~v~~~~V~~~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~-~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~~~~ 242 (315)
T PRK00066 164 DVDPRSVHAYIIGEHGDTEFPVWSHANVAGVPLEEYLEEN-EQYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMALAR 242 (315)
T ss_pred CCCcccEEEEEEecCCCcceecceeceECCEEHHHHhhhc-cCcCHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHH
Confidence 9999999999999999999999999999999999876431 235567788999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++|+++++.++|+|++.+|+|| ++++|||+||++|++|++++++++|+++|+++|++|+++|++.++++
T Consensus 243 i~~ail~~~~~v~~~sv~~~g~yg-~~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~~~~~~ 313 (315)
T PRK00066 243 ITKAILNNENAVLPVSAYLEGQYG-EEDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMDEA 313 (315)
T ss_pred HHHHHHcCCCeEEEEEEEeccccC-CCCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 67999999999999999999999999999999999999999988875
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=505.52 Aligned_cols=298 Identities=46% Similarity=0.816 Sum_probs=277.4
Q ss_pred EEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCC-CcEEEcCCccccCCCcEEEEecccccCCC
Q psy12825 182 VVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIESGSDIAMSEGSRIVIITAGVRSLVG 260 (488)
Q Consensus 182 IIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~-~~v~~ttd~eal~dADiVIitag~~~k~G 260 (488)
|||+|.||+++++.|+.+++.+||+|+|++++++++.++||+|+..+... .++. ++||++++|||+||+++|.|++||
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~daDivVitag~~rk~g 79 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-SGDYSDCKDADLVVITAGAPQKPG 79 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-cCCHHHHCCCCEEEECCCCCCCCC
Confidence 68999999999999999999999999999999999999999999754433 3443 578999999999999999999999
Q ss_pred cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCC
Q psy12825 261 ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 261 ~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
++|.|++.+|+++++++++.|.+++|++++|++|||+|++|+++++++++|++||||+||.||++|+++++|++++++|+
T Consensus 80 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~ 159 (299)
T TIGR01771 80 ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQ 159 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHHHHH
Q psy12825 341 SVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTL 420 (488)
Q Consensus 341 ~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii~aI 420 (488)
+|+++||||||++++|+||+++++|+|+.++..... .+++.+++++.++++.++++|++.||+++|++|+++++++++|
T Consensus 160 ~V~~~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~-~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ai 238 (299)
T TIGR01771 160 SVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKG-TETDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAI 238 (299)
T ss_pred eEEEEEEecCCCceeeceeeeEECCEEHHHHhhhcc-cccHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753211 0123356789999999999999999999999999999999999
Q ss_pred HcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHH
Q psy12825 421 LNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQ 482 (488)
Q Consensus 421 l~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~ 482 (488)
+.|+++++|+|++.+|+||++ |+|||+||+||++|++++++++|+++|+++|++|++.|++
T Consensus 239 l~d~~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 239 LHDENRVLPVSAYLDGEYGIK-DVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HcCCCcEEEEEEEecccCCCC-CEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999975 7999999999999999999999999999999999999874
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=499.75 Aligned_cols=305 Identities=42% Similarity=0.705 Sum_probs=283.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+||+|||+|.+|+++++.|+..++..+|+|+|++++++++.++|++|...+........+.+++++++||+||+++|.|+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999999999888999999999999999999999864332222223567889999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|++++++++||++||||+||.||++|++++||+++++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~v 160 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNV 160 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
++++|+++||||||++++|+||+++++|.|+.+++... .+.+++++++.+++++++++|++.||+++|++|.++++++
T Consensus 161 ~~~~v~~~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~~ 238 (306)
T cd05291 161 DPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEG--KLSELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIV 238 (306)
T ss_pred CcccceEEEEecCCCceeecceeeEEcCEEHHHHhhcc--ccChHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876431 2345668899999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHH
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQK 485 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~ 485 (488)
++|+++++.++|+|++.+|+|| ++|+|||+||++|++|++++++++|+++|+++|++|+++|++.++
T Consensus 239 ~ail~~~~~v~~~s~~~~g~yg-~~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~~~~ 305 (306)
T cd05291 239 KAILNDENAILPVSAYLDGEYG-EKDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENIK 305 (306)
T ss_pred HHHHcCCCEEEEEEEEeccccC-CCCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 579999999999999999999999999999999999999998765
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-63 Score=502.90 Aligned_cols=304 Identities=22% Similarity=0.294 Sum_probs=279.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dA 246 (488)
++.||+|||| |.||+++++.|+.+++.+ ||+|+|+++ ++++|.++||+|+.. +....++. +++|++++||
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TDPEEAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cChHHHhCCC
Confidence 5789999999 999999999999999988 999999965 669999999999873 22223333 5679999999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.++++|++|.|++..|++++++++++|.+++| ++++|++|||+|+||+++++.+ |||++||||+ |.||+
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LDs 159 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLDH 159 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999999999999 9999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcC
Q psy12825 325 MRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg 403 (488)
+|++++||+++|++|++|+. +||||||++++|+||+++++|+|+.++... +...++++.+++++++++|++.||
T Consensus 160 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~-----~~~~~~~i~~~v~~~g~~Ii~~kG 234 (323)
T TIGR01759 160 NRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKD-----DKWLEGEFIPTVQQRGAAVIEARG 234 (323)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcc-----hhhHHHHHHHHHHhhHHHHHhccC
Confidence 99999999999999999965 699999999999999999999999887531 011257899999999999999999
Q ss_pred Ccchh-hHHHHHHHHHHHHcCC--CcEEEEEeeecC-cCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHH
Q psy12825 404 YTSWA-LGLSVASISHTLLNNT--NKIHAVSTLIQG-HHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAA 478 (488)
Q Consensus 404 ~t~~s-~A~a~~~ii~aIl~~~--~~v~~vsv~~~G-~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~ 478 (488)
+++|+ +|+++++++++|++|+ +.++|+|++++| +||+|+|+|||+||++|++|++++++ ++|+++|+++|++|++
T Consensus 235 ~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~sa~ 314 (323)
T TIGR01759 235 ASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDATED 314 (323)
T ss_pred CcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHH
Confidence 99995 6799999999999998 999999999999 89998899999999999999999999 9999999999999999
Q ss_pred HHHHHHHh
Q psy12825 479 TISQIQKG 486 (488)
Q Consensus 479 ~i~~~~~~ 486 (488)
.|++.++.
T Consensus 315 ~lk~~~~~ 322 (323)
T TIGR01759 315 ELLEEKEE 322 (323)
T ss_pred HHHHHHhc
Confidence 99988764
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-62 Score=496.37 Aligned_cols=299 Identities=44% Similarity=0.769 Sum_probs=283.1
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccccCC
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLV 259 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~k~ 259 (488)
|+|||+|.||+++++.++.+++.++|+|+|++++++++.++||+|........++..++||++++|||+||+++|.|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 68999999999999999999999999999999999999999999987543345666667899999999999999999999
Q ss_pred CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCC
Q psy12825 260 GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 260 G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|++|.+++.+|+++++++++.|+++||++|+|++|||+|++++++++++|+|++||||+||.+|+.|+++++|+++++++
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~ 160 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDP 160 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHHHH
Q psy12825 340 ESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHT 419 (488)
Q Consensus 340 ~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii~a 419 (488)
++|+++|+||||++++|+||+++++|.|+.++.+. +++.++++.+++++++++|++.||+++|++|+++++++++
T Consensus 161 ~~v~~~viGeHg~s~v~~~S~~~v~g~p~~~~~~~-----~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~a 235 (300)
T cd00300 161 QSVHAYVLGEHGDSQVVAWSTATVGGLPLEELAPF-----TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKS 235 (300)
T ss_pred ccEEEEEEeccCCceeeeeeeeEECCEEHHHhhcc-----cHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987642 2456789999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 420 LLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 420 Il~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
|++++++++|++++.+|+|| ++++|||+||++|++|++++++++|+++|+++|++|+++|++.+
T Consensus 236 i~~~~~~v~~~s~~~~g~yg-~~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 236 ILLDERRVLPVSAVQEGQYG-IEDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHcCCCeEEEEEEEecCccC-CCCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 67999999999999999999999999999999999999999765
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-62 Score=495.87 Aligned_cols=309 Identities=28% Similarity=0.463 Sum_probs=288.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||+|||||+||+++++.++..++ .+|+|+|++++++++.++|+.|...+.. ..++..++||++++||||||+++
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECC
Confidence 467899999999999999999999987 6899999999999999999999854332 35677678999999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQ 333 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~ 333 (488)
|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|++++++++++++|++||+|+||.+|++|++++||+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~la~ 161 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAE 161 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhHH
Q psy12825 334 KLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGL 411 (488)
Q Consensus 334 ~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A~ 411 (488)
+++++|++|+++|+||||++++|+||+++++|+|+.++.+. ..+++++++++.+++++++++|++. ||+++|++|+
T Consensus 162 ~l~v~~~~v~~~viGeHg~~~v~~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v~~~g~~ii~~~~kg~t~~~~a~ 239 (319)
T PTZ00117 162 KLGVSPGDVSAVVIGGHGDLMVPLPRYCTVNGIPLSDFVKK--GAITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAA 239 (319)
T ss_pred HhCCCcccceEEEeecCCCcEEeceeeceECCEEHHHHhhc--cccCHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Confidence 99999999999999999999999999999999999987643 1245667889999999999999996 7899999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 412 SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 412 a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++++|++|+++++|+|++++|+||++ |+|||+||+++++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 240 a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~~~~s~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~~~~~~ 314 (319)
T PTZ00117 240 AIVAMIEAYLKDEKRVLVCSVYLNGQYNCK-NLFVGVPVVIGGKGIEKVIELELNAEEKELFDKSIESIQELTQKA 314 (319)
T ss_pred HHHHHHHHHhcCCCeEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 899999999999999999999999999999999999999887654
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=499.74 Aligned_cols=303 Identities=18% Similarity=0.279 Sum_probs=277.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcC-CCCCCCcEEEcCCccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGA-PFLRSPKIESGSDIAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~-~~~~~~~v~~ttd~eal~dA 246 (488)
+++||+|||| |.||+++++.|+..++.+ +|+|+|+++ +++++.++||+|+. .+....++. +++|++++||
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~y~~~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-DDPNVAFKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-cChHHHhCCC
Confidence 5789999998 999999999999999888 999999954 56999999999987 332223333 5678999999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.++++|++|.|++..|++++++++++|.+++ |++++|++|||+|++|+++++.+ |||++||||+ |.||+
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LDs 160 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRLDH 160 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHHHH
Confidence 999999999999999999999999999999999999987 79999999999999999999999 9999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCceeE-EEeecCCCcccccccceecCccccccCCCCCCCCChH-HHHHHHHHHhhhHHHHHHhc
Q psy12825 325 MRFRVLLAQKLGLSPESVHGF-IIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTE-NFVRLHADVVNSAYEVIKLK 402 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~~-V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~-~~~el~~~v~~~~~eIi~~k 402 (488)
+|++++||++++++|++|+++ ||||||++++|+||+++++|+|+.++... .+ .++++.+++++++++|++.|
T Consensus 161 ~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~------~~~~~~~i~~~v~~~g~~Ii~~k 234 (326)
T PRK05442 161 NRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVIND------QAWLEDTFIPTVQKRGAAIIEAR 234 (326)
T ss_pred HHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccc------hhhHHHHHHHHHHhhHHHHHhCc
Confidence 999999999999999999995 59999999999999999999999887531 11 25689999999999999999
Q ss_pred CCcchhhHHH-HHHHHHHHHcC--CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHH
Q psy12825 403 GYTSWALGLS-VASISHTLLNN--TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAA 478 (488)
Q Consensus 403 g~t~~s~A~a-~~~ii~aIl~~--~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~ 478 (488)
|+++|++|.+ +++++++|+++ +++++|+|++++|+||+|+++|||+||++| +|+++++. ++|+++|+++|++|++
T Consensus 235 G~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s~~ 313 (326)
T PRK05442 235 GASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDATLA 313 (326)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999998 59999999999 899999999999999998999999999999 99999976 9999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
+|++..+.+
T Consensus 314 ~l~~~~~~~ 322 (326)
T PRK05442 314 ELEEERDAV 322 (326)
T ss_pred HHHHHHHHH
Confidence 999877654
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=504.54 Aligned_cols=308 Identities=19% Similarity=0.252 Sum_probs=280.5
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEE--eCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCcccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLI--DSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~--Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal 243 (488)
+..++.||+|||| |.||+++++.|+.+++++ .|+|+ |++++++++.++||+|++. +....+. .+++|+++
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~-~~~~~v~i~~~~y~~~ 118 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY-PLLREVSIGIDPYEVF 118 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh-hhcCceEEecCCHHHh
Confidence 4556899999999 999999999999999887 56666 8899999999999999872 2223454 35678999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCCh
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNL 322 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~l 322 (488)
+|||+||+++|.|++||++|.|++..|+++++++++.|++++ |++++|++|||+|+||+++++.+++|++|+||+||.|
T Consensus 119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~L 198 (387)
T TIGR01757 119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRL 198 (387)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchh
Confidence 999999999999999999999999999999999999999986 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 323 DSMRFRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 323 ds~R~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
|++|++++||++++++|++|+ ++||||||++|+|+||+++++|+|+.++.+.. +..++++.+++++++++|++.
T Consensus 199 DsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V~G~pl~~~~~~~-----~~~~~ei~~~v~~~g~eIi~~ 273 (387)
T TIGR01757 199 DENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGRPAKEVIKDT-----KWLEEEFTPTVQKRGGALIKK 273 (387)
T ss_pred HHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEECCEEhHHhcccc-----cchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999995 89999999999999999999999998875321 112578999999999999999
Q ss_pred cCCcch-hhHHHHHHHHHHHH--cCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEe-ccCCCHHHHHHHHHH
Q psy12825 402 KGYTSW-ALGLSVASISHTLL--NNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHII-NQNLTPDEAEKLRKS 476 (488)
Q Consensus 402 kg~t~~-s~A~a~~~ii~aIl--~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~-~l~L~~~E~~~L~~s 476 (488)
||.++| ++|.++++++++|+ +++++++|+|++.+|+ ||+++|+|||+||+++++|+++++ +++|+++|+++|++|
T Consensus 274 KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~~S 353 (387)
T TIGR01757 274 WGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDVSMDDFLRERIRKS 353 (387)
T ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHHHH
Confidence 998888 88999999999999 8899999999999997 999889999999999999999996 899999999999999
Q ss_pred HHHHHHHHHh
Q psy12825 477 AATISQIQKG 486 (488)
Q Consensus 477 a~~i~~~~~~ 486 (488)
+++|++..+.
T Consensus 354 a~~L~~e~~~ 363 (387)
T TIGR01757 354 EDELLKEKEC 363 (387)
T ss_pred HHHHHHHHHH
Confidence 9999866543
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-62 Score=510.99 Aligned_cols=307 Identities=19% Similarity=0.230 Sum_probs=281.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHc-------CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCcccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQ-------GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~-------~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal 243 (488)
+..++.||+|||| |.||+++++.|+.+ ++..||+|+|+++++++|.++||+|++. +...++. .++||+++
T Consensus 96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~-~~~~~v~i~~~~ye~~ 174 (444)
T PLN00112 96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY-PLLREVSIGIDPYEVF 174 (444)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh-hhcCceEEecCCHHHh
Confidence 4557899999999 99999999999999 6667999999999999999999999873 2223454 45688999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc-cCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCCh
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNL 322 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~l 322 (488)
+|||+||+++|.|+++|++|.|++..|++|++++++.|++ ++|++++|++|||+|+||+++++.++++++|+||+||.|
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtgT~L 254 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRL 254 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceEEeeccH
Confidence 9999999999999999999999999999999999999999 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 323 DSMRFRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 323 ds~R~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
|++|++++||+++|+++++|+ ++||||||++|||+||+++|+|+|+.+++... +..++++.+++++++++|++.
T Consensus 255 DsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~-----~~~~~ei~~~v~~~g~~Ii~~ 329 (444)
T PLN00112 255 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDH-----KWLEEEFTPKVQKRGGVLIKK 329 (444)
T ss_pred HHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccc-----cchHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999995 49999999999999999999999999875321 112578999999999999999
Q ss_pred cCCcch-hhHHHHHHHHHHHH--cCCCcEEEEEeeecC-cCCCCCceEEEEEEEEcCCceEEEe-ccCCCHHHHHHHHHH
Q psy12825 402 KGYTSW-ALGLSVASISHTLL--NNTNKIHAVSTLIQG-HHGIEEEVFLSLPCVMADNGVTHII-NQNLTPDEAEKLRKS 476 (488)
Q Consensus 402 kg~t~~-s~A~a~~~ii~aIl--~~~~~v~~vsv~~~G-~ygl~~d~~~svPv~igk~Gv~~i~-~l~L~~~E~~~L~~s 476 (488)
||+++| ++|.++++++.+|+ +|+++++|+|++.+| +||+++|+|||+||+++++|+++++ +++|+++|+++|++|
T Consensus 330 kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~S 409 (444)
T PLN00112 330 WGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKKS 409 (444)
T ss_pred cCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHHH
Confidence 998888 88999999999999 889999999999999 5999899999999999999999999 699999999999999
Q ss_pred HHHHHHHHH
Q psy12825 477 AATISQIQK 485 (488)
Q Consensus 477 a~~i~~~~~ 485 (488)
+++|.+..+
T Consensus 410 a~~L~~e~~ 418 (444)
T PLN00112 410 EAELLAEKR 418 (444)
T ss_pred HHHHHHHHH
Confidence 999986654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=490.82 Aligned_cols=309 Identities=29% Similarity=0.518 Sum_probs=287.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||+|||||.||+++++.++..++ .+|+|+|++++++++.++|+.|...+.. ..+|..++||++++||||||+++
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECC
Confidence 356799999999999999999999998 4699999999999999999999754332 45788778999999999999999
Q ss_pred ccccCCCc-----chHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 254 GVRSLVGE-----TRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 254 g~~~k~G~-----~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
+.++++|+ +|.+++..|++++++++++|+++||++|+|++|||+|++++++++++++|++||||+||.+|+.|++
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~lds~R~~ 162 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLR 162 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCcccHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcc
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTS 406 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~ 406 (488)
+.||+++++++++|+++|+||||++++|+||+++++|.|+.++.++ ..+++++++++.+++++++++|++. ||+++
T Consensus 163 ~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~i~g~~~~~~~~~--~~~~~~~~~~i~~~~~~~g~~i~~~~gkg~t~ 240 (321)
T PTZ00082 163 TYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYVTVGGIPLSEFIKK--GLITQEEIDEIVERTRNTGKEIVDLLGTGSAY 240 (321)
T ss_pred HHHHHHhCCCcccceeeEEecCCCceEecceeeEECCEEHHHhhhc--ccCCHHHHHHHHHHHHHHHHHHHhhcCCCccH
Confidence 9999999999999999999999999999999999999999987643 1245677899999999999999995 68999
Q ss_pred hhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Q psy12825 407 WALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKG 486 (488)
Q Consensus 407 ~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~ 486 (488)
||+|.++++++++|++|++.++|+|++.+|+||+ .|+|+|+||+||++|++++++++|+++|+++|++|++.|++.++-
T Consensus 241 ~~ia~a~~~i~~ail~d~~~v~~vs~~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 241 FAPAAAAIEMAEAYLKDKKRVLPCSAYLEGQYGH-KDIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEEecccCCC-CCeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998 589999999999999999999999999999999999999988764
Q ss_pred h
Q psy12825 487 L 487 (488)
Q Consensus 487 ~ 487 (488)
+
T Consensus 320 ~ 320 (321)
T PTZ00082 320 L 320 (321)
T ss_pred h
Confidence 3
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=489.88 Aligned_cols=308 Identities=46% Similarity=0.804 Sum_probs=287.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
|||+|||+|.+|.++++.|+.+++..+|+|+|++++++++.++|+.|...+..... ..++|++++++||+||++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~-i~~~d~~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVR-IYAGDYADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeE-EeeCCHHHhCCCCEEEEccCCCC
Confidence 58999999999999999999999888999999999999999999999864332333 34678999999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.+++..|+++++++++.|++++|+++++++|||+|++++++++++|||++||||+||.||+.|++++||+++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~v 159 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGV 159 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
++.+|+++|||+||++++|+||+++++|+|+.++.+.....++++.++++.+++++++++|++.||+++|++|+++++++
T Consensus 160 ~~~~v~~~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~~~~a~a~~~i~ 239 (308)
T cd05292 160 DPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIV 239 (308)
T ss_pred CccceeceeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876432224556778999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|++|++.++|+|++.+|+||+ .++|+|+||+||++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 240 ~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~~~~~~ 308 (308)
T cd05292 240 EAILRDENSVLTVSSLLDGQYGI-KDVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIESL 308 (308)
T ss_pred HHHHcCCCcEEEEEEEEcccCCC-CCEEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999997 5899999999999999999999999999999999999999988754
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-61 Score=485.91 Aligned_cols=301 Identities=32% Similarity=0.566 Sum_probs=282.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+||+|||+|.||.++|+.++..++. +|+|+|++++..++.+.|+.|..... ...++..++||+++++||+||+++|.|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCCC
Confidence 6999999999999999999999886 79999999988888888888764322 245787788998899999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
+++|++|.|++..|++++++++++|.+++|++++|++|||+|++++++++++|+|++||||+||.||++|+++.+|++|+
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~la~~l~ 160 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELG 160 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A~a~~ 414 (488)
++|++|+++||||||++++|+||+++++|+|+.++.. ++.++++.+++++++++|++. ||+++|++|++++
T Consensus 161 v~~~~v~~~v~GeHg~s~~~~wS~~~i~g~~~~~~~~-------~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~~~~ 233 (305)
T TIGR01763 161 VSVQDVTACVLGGHGDAMVPLVRYSTVAGIPVADLIS-------AERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASVV 233 (305)
T ss_pred cCHHHeeeeEEecCCCcEEeeeeeeEECCEEHHHhcC-------HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999988642 345789999999999999997 6799999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+|+++|++|++.++|+|++.+|+||+ +|+|+|+||++|++|++++++++|+++|+++|++|++.|++.++++
T Consensus 234 ~i~~ai~~~~~~v~~~s~~~~~~yg~-~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~~~~~ 305 (305)
T TIGR01763 234 EMVEAILKDRKRVLPCAAYLDGQYGI-DGIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDENCKML 305 (305)
T ss_pred HHHHHHhCCCCeEEEEEEEecccCCC-CceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998 6999999999999999999999999999999999999999988764
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=488.23 Aligned_cols=306 Identities=24% Similarity=0.318 Sum_probs=279.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRI 248 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADi 248 (488)
.||+|||| |.+|+++++.|+.+++++ +|+|+|+++ +.+++.++||.|... +.....+. +.++++++|||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~-~~~~~~~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT-TDPEEAFKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe-cChHHHhCCCCE
Confidence 38999999 999999999999999887 499999998 999999999999862 22223333 567899999999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcC-CCCCcEEeecCChHHHH
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSG-FPKNRVIGSGTNLDSMR 326 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg-~p~~rViG~gt~lds~R 326 (488)
||+++|.|++||++|.|++..|+++++++++.|+++| |++++|++|||+|+||+++++.+| +|++||||+ |.||++|
T Consensus 80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R 158 (323)
T cd00704 80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNR 158 (323)
T ss_pred EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHH
Confidence 9999999999999999999999999999999999996 999999999999999999999999 599999999 9999999
Q ss_pred HHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecCccccccCCCCCCCCChH-HHHHHHHHHhhhHHHHHHhcCC
Q psy12825 327 FRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTE-NFVRLHADVVNSAYEVIKLKGY 404 (488)
Q Consensus 327 ~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~-~~~el~~~v~~~~~eIi~~kg~ 404 (488)
++++||++++++|++|+ ++||||||++++|+||+++++|.|+.++.+. .++++ ..+++.+++++++++|++.||+
T Consensus 159 ~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~---~~~~~~~~~~i~~~v~~~~~~Ii~~kg~ 235 (323)
T cd00704 159 AKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD---LLDEEWLNDEFVKTVQKRGAAIIKKRGA 235 (323)
T ss_pred HHHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc---ccChHHHHHHHHHHHHhhHHHHHhccCc
Confidence 99999999999999995 5899999999999999999999999887542 12332 2468999999999999999999
Q ss_pred cchh-hHHHHHHHHHHHHcCCC--cEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHH
Q psy12825 405 TSWA-LGLSVASISHTLLNNTN--KIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s-~A~a~~~ii~aIl~~~~--~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i 480 (488)
++|+ +|+++++++++|++|++ +++|+|++++|+| |+|+|+|||+||+||++||+++.+++|+++|+++|++|++.|
T Consensus 236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~l 315 (323)
T cd00704 236 SSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEEL 315 (323)
T ss_pred chhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9997 69999999999999998 9999999999999 998899999999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q psy12825 481 SQIQKGLL 488 (488)
Q Consensus 481 ~~~~~~~~ 488 (488)
++..+.+|
T Consensus 316 ~~~~~~~~ 323 (323)
T cd00704 316 IEEKEIAL 323 (323)
T ss_pred HHHHHhhC
Confidence 99887654
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=483.30 Aligned_cols=303 Identities=19% Similarity=0.271 Sum_probs=278.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dA 246 (488)
+++||+|||| |.||+++++.|+.+++++ ||+|+|+++ +++++.++||+|+.. +....++. +.+|++++||
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~da 79 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-DDPNVAFKDA 79 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-cCcHHHhCCC
Confidence 4689999999 999999999999999999 999999955 459999999999862 22223343 5678999999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.++++|++|.|++..|++++++++..|++++ |++++|++|||+|+||+++++.+ +||++||||+ |.||+
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs 158 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH 158 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHH
Confidence 999999999999999999999999999999999999999 59999999999999999999999 5999999999 99999
Q ss_pred HHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChH--HHHHHHHHHhhhHHHHHHh
Q psy12825 325 MRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTE--NFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~--~~~el~~~v~~~~~eIi~~ 401 (488)
.|+++.+|+++|+++.+|++ +|||+||++++|+||+++++|+|+.++.. +. .++++.+++++++++|++.
T Consensus 159 ~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~-------~~~~~~~~i~~~v~~~g~~Ii~~ 231 (322)
T cd01338 159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVIN-------DRAWLEDEFIPTVQKRGAAIIKA 231 (322)
T ss_pred HHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcC-------hHhhHHHHHHHHHHhhHHHHHhC
Confidence 99999999999999999998 56999999999999999999999987642 22 2578999999999999999
Q ss_pred cCCcchhhH-HHHHHHHHHHHcCC--CcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 402 KGYTSWALG-LSVASISHTLLNNT--NKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 402 kg~t~~s~A-~a~~~ii~aIl~~~--~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
||+++|+++ +++++++++|++|+ +.++|+|++++|+||+|+|+|||+||++|++|++++++++|+++|+++|++|++
T Consensus 232 kG~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~ 311 (322)
T cd01338 232 RGASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLA 311 (322)
T ss_pred cCCccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999 59999999999998 599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++..+.+
T Consensus 312 ~l~~~~~~~ 320 (322)
T cd01338 312 ELLEEREAV 320 (322)
T ss_pred HHHHHHHHh
Confidence 999887654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-59 Score=472.27 Aligned_cols=303 Identities=33% Similarity=0.562 Sum_probs=283.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
++||+|||+|.||+++++.++..++. +|+|+|++++++++..+|+.+..... ...+++.++|+++++|||+||++++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~~ 80 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAGV 80 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCCC
Confidence 47999999999999999999999887 99999999999999999998864322 23577777889999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
|+++|++|.+++.+|++++++++++|++++|++|+|++|||+|++|+++++++++|++||||+||.+|++|++++||+++
T Consensus 81 p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la~~l 160 (307)
T PRK06223 81 PRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEEL 160 (307)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSV 413 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A~a~ 413 (488)
+++|++|+++|+|+||++++|+||+++++|.|+.++. +++.++++.+.++.+++++++. |+++.|++|.++
T Consensus 161 ~v~~~~v~~~viGehg~s~~p~~S~~~v~g~~~~~~~-------~~~~~~~l~~~v~~~~~~ii~~~~kg~t~~~~A~~~ 233 (307)
T PRK06223 161 NVSVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLEDLL-------SKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASI 233 (307)
T ss_pred CcChhhCcccEEcCCCCcceEchhhCEECCEEHHHhC-------ChHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHH
Confidence 9999999999999999999999999999999998863 2445788999999999999996 899999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGLL 488 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~~ 488 (488)
.+++++|+.+++.+++++++++|+||+ +|++||+||+++++|++++++++|+++|+++|++|+++|++.+++++
T Consensus 234 ~~ii~ail~~~~~~~~~~v~~~g~yg~-~~~~~s~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~ 307 (307)
T PRK06223 234 AEMVEAILKDKKRVLPCSAYLEGEYGV-KDVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVKKLIEALK 307 (307)
T ss_pred HHHHHHHHcCCCcEEEEEEEecCcCCC-CCeEEEeEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 79999999999999999999999999999999999999999988763
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-59 Score=471.82 Aligned_cols=303 Identities=35% Similarity=0.578 Sum_probs=283.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh--hHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE--DRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~--e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|+|| |.+|+++++.++..++.++|+|+|+++ +++++..+|+.|...... ..++..++|++++++||+||+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita 80 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA 80 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence 69999998 999999999999999988999999966 889999999998754322 34676777899999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQ 333 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~ 333 (488)
|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++++.+++|++||||+||.||+.|++++||+
T Consensus 81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~ 160 (309)
T cd05294 81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAK 160 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHH
Q psy12825 334 KLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413 (488)
Q Consensus 334 ~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~ 413 (488)
++++++++|+++|+||||++++|+||+++++|.|+.++.. ++++.++++.+++++++++|++.||+++|++|.++
T Consensus 161 ~l~v~~~~v~~~viGeHg~s~~~~~S~~~i~g~~~~~~~~-----~~~~~~~~i~~~v~~~g~~i~~~kg~t~~~~a~~~ 235 (309)
T cd05294 161 HFNVHISEVHTRIIGEHGDSMVPLISSTSIGGIPIKRFPE-----YKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAI 235 (309)
T ss_pred HHCcChHHeEEEEEecCCCceEeeeeecEECCEEHHHhhc-----ccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 9999999999999999999999999999999999988743 12455788999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKG 486 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~ 486 (488)
++++++|+++++.++|++++++|+| |++ |+++|+||+++++|++++++++|+++|+++|++|++.|++.++.
T Consensus 236 ~~ii~ail~~~~~v~~vsv~~~g~~~~~~-~~~~svP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~~~~~ 308 (309)
T cd05294 236 SNLVRTIANDERRILTVSTYLEGEIDGIR-DVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKKYTRE 308 (309)
T ss_pred HHHHHHHHCCCCeEEEEEEEECCccCCCC-CeEEEeEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999997 997 99999999999999999999999999999999999999998765
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=466.93 Aligned_cols=296 Identities=33% Similarity=0.603 Sum_probs=278.2
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEecccccC
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGVRSL 258 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~~~k 258 (488)
|+|||||.||.++++.++..++. +|+|+|++++++++..+|+.+..... ...++..++|+++++|||+||++++.|++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCCCCC
Confidence 68999999999999999999887 99999999999999999998865322 23577777889999999999999999999
Q ss_pred CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCC
Q psy12825 259 VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 338 (488)
Q Consensus 259 ~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~ 338 (488)
+|++|.+++.+|++++++++++|+++||++++|++|||+|++++++++++++|++||||+||.+|++|++++||++|+++
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~v~ 159 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVS 159 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc--CCcchhhHHHHHHH
Q psy12825 339 PESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK--GYTSWALGLSVASI 416 (488)
Q Consensus 339 p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k--g~t~~s~A~a~~~i 416 (488)
|++|+++|+|+||++++|+||+++++|.|+.++.. +++++++.++++.++++|++.| |+++|++|.++++|
T Consensus 160 ~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-------~~~~~~~~~~v~~~~~~ii~~k~~g~t~~~~a~~~~~i 232 (300)
T cd01339 160 VKDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELIT-------KEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEM 232 (300)
T ss_pred ccceEEEEEeCCCCcceecceecEECCEEHHHhcC-------hHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999987642 3458899999999999999976 99999999999999
Q ss_pred HHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 417 i~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
+++|+.+++.++|+|++++|+||++ ++|||+||++|++|++++++++|+++|+++|++|++.|++.+
T Consensus 233 ~~ail~~~~~i~~~s~~~~g~yg~~-~~~~s~P~~ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 233 VEAILKDKKRVLPCSAYLEGEYGIK-DIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred HHHHHcCCCcEEEEEEEeccccCCC-CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999997 899999999999999999999999999999999999999865
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=484.00 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=297.8
Q ss_pred cEEEEecch--------hHHHHH-HHHHhhhhHHHHHHHHHHHHhhhCCC-CCCCCceEEEEec-ccchHHHHHHHHHcC
Q psy12825 132 KITVVGAGQ--------VGMACT-YSILTQTMARDAVSTVDRLLSQVAPS-IESPDQKITVVGA-GQVGMACTYSILTQG 200 (488)
Q Consensus 132 ki~vvg~g~--------vg~~~a-~~~~~k~la~eivlid~~~~~e~~~~-~~~~~~KIaIIGA-G~vG~~ia~~La~~~ 200 (488)
.+.+.|... =|+++- .+=.|+.+++|+..++.....|++.. +..++.+|+|.|| |.+|+++.+.|+.+.
T Consensus 68 g~l~gg~~~f~e~~~~yyg~~s~m~~~~~~~i~~en~~~~~~~~~e~~~~~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~ 147 (452)
T cd05295 68 GLLLGGCNEFLEYAESYYGITSSMMSEEMTVIAEENLETHIEVEKEEEELRSKINPLQVCITNASAPLCYHLIPSLASGE 147 (452)
T ss_pred ceEecChHHHHHHHHHHhCccccccHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHHHhCCc
Confidence 555666554 233333 34478899999999997655555443 5557889999999 999999999999986
Q ss_pred CCC-----eEEEEeC--ChhHHHHHHHHHhhcCCCCCCCcEE-EcCCccccCCCcEEEEecccccCCCcchHhhHhhhHH
Q psy12825 201 IYS-----NFCLIDS--NEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVK 272 (488)
Q Consensus 201 l~~-----el~L~Di--~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal~dADiVIitag~~~k~G~~r~dll~~N~~ 272 (488)
+++ .|+|+|+ ++++++|.++||+|++. +....+. .+++|++|+|||+||+++|.|+++|++|.|++..|++
T Consensus 148 ~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~-pll~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~ 226 (452)
T cd05295 148 VFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF-PLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVA 226 (452)
T ss_pred ccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH-hhcCCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHH
Confidence 543 6999999 79999999999999872 2222232 3567899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC--CcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCce-eEEEe
Q psy12825 273 IFKDLIPKIAKGSP--DCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVH-GFIIG 348 (488)
Q Consensus 273 ii~ei~~~I~~~~p--~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~-~~V~G 348 (488)
|++++++.|++++| ++++|++|||+|++|+++++.+ +||++||+|+|| +|++|++++||+++|+++++|+ ++|||
T Consensus 227 Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwG 305 (452)
T cd05295 227 ICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWG 305 (452)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEE
Confidence 99999999999999 8999999999999999999999 999999999987 6799999999999999999995 69999
Q ss_pred ecCCCcccccccceecC------------ccccccCCCCCCCCChHHH--HHHHHHHhhhHHHHHHhcCCcchhhHHHHH
Q psy12825 349 EHGDSSVPVWSGVNVAG------------VTLKELNPTIGTEQDTENF--VRLHADVVNSAYEVIKLKGYTSWALGLSVA 414 (488)
Q Consensus 349 ~HG~~~vp~~S~a~v~g------------~pl~e~~~~~~~~~~~~~~--~el~~~v~~~~~eIi~~kg~t~~s~A~a~~ 414 (488)
|||+++||+||+++|+| +|+.+++. +++| +++.+.+++++. .+||++.||+|.+++
T Consensus 306 eHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~-------d~~w~~~~~~~~v~~rg~---~rkgsT~~siA~A~~ 375 (452)
T cd05295 306 NIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVH-------DSKWINGEFVATLKSLSS---SLNHEAAISPAHAIA 375 (452)
T ss_pred ccCCceeeeeeEEEEcccccccccccccCccHHHHhc-------chhhhHHHHHHHHHHHHH---hccCChHHHHHHHHH
Confidence 99999999999999987 88877642 2232 567888888887 678999999999999
Q ss_pred HHHHHHHcCC--CcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNT--NKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~--~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++|++|+ ++++|+|++++|+||+|+|++||+||+++++|++.+..++|+++|+++|++|+++|.+..+.+
T Consensus 376 ~iv~ail~~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L~L~e~E~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 376 TTLSYWYHGSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDLELSEILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred HHHHHHHhCCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999996 699999999999999999999999999999999999999999999999999999999876544
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=472.01 Aligned_cols=304 Identities=18% Similarity=0.242 Sum_probs=271.9
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCCcEE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGSRIV 249 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dADiV 249 (488)
||+|||| |.||+++++.|+.+++.+ +|+|+|++++ ++++.++||.|..... ...++.+ .+|++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCCCCEE
Confidence 6999999 999999999999988875 6999999654 5899999999987322 2345544 348999999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
|+++|.++++|++|.+++..|+++++++++.|.+++ |++++|++|||+|+||++++++++++|+++||+||.||++|++
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r 159 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRAL 159 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999999999999987778899999999999999
Q ss_pred HHHHHHhCCCCCCce-eEEEeecCCCcccccccceec-C---ccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcC
Q psy12825 329 VLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVA-G---VTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~-g---~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg 403 (488)
++||++++++|++|+ ++||||||++++|+||+++++ | +|+.++... +...++++.+++++++++|++.||
T Consensus 160 ~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~-----~~~~~~~i~~~v~~~g~~Ii~~k~ 234 (324)
T TIGR01758 160 AQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKD-----DAYLDGEFITTVQQRGAAIIRARK 234 (324)
T ss_pred HHHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcc-----hhhHHHHHHHHHHhCHHHHHhccC
Confidence 999999999999997 599999999999999999999 9 999887532 011257899999999999999765
Q ss_pred -CcchhhHHHHHHHHHHHH--cCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 404 -YTSWALGLSVASISHTLL--NNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 404 -~t~~s~A~a~~~ii~aIl--~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
++.|++|.++++++++|+ .++++++|+|++.+|+ ||+|.|+|||+||+++++|+..+.+++|+++|+++|++|++.
T Consensus 235 ~~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~~ 314 (324)
T TIGR01758 235 LSSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAKE 314 (324)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999 7889999999999999 999889999999999955555555599999999999999999
Q ss_pred HHHHHHhhC
Q psy12825 480 ISQIQKGLL 488 (488)
Q Consensus 480 i~~~~~~~~ 488 (488)
|++.++.+|
T Consensus 315 lk~~~~~~~ 323 (324)
T TIGR01758 315 LEEERDEAL 323 (324)
T ss_pred HHHHHHHhh
Confidence 999887764
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-58 Score=465.85 Aligned_cols=287 Identities=25% Similarity=0.380 Sum_probs=261.6
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cC-C--ccccCCCcEEEEec
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GS-D--IAMSEGSRIVIITA 253 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-tt-d--~eal~dADiVIita 253 (488)
||+|||| |.||+++|+.|+.+++.+||+|+|+++ ++|.++||+|.. ...++.. ++ + |++++|||+||+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~---~~~~i~~~~~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP---TAASVKGFSGEEGLENALKGADVVVIPA 75 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC---cCceEEEecCCCchHHHcCCCCEEEEeC
Confidence 7999999 999999999999999999999999987 779999999975 2346665 32 3 79999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh----HHHHHHHhcCCCCCcEEeecCChHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV----LTYISWKLSGFPKNRVIGSGTNLDSMRFRV 329 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi----~t~~~~k~sg~p~~rViG~gt~lds~R~~~ 329 (488)
|.++++|++|+|++..|++++++++++|.+++|++++|++|||+|+ +++++++.+|||++||||+|+ ||++|+++
T Consensus 76 G~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~-LDsaR~r~ 154 (312)
T TIGR01772 76 GVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTT-LDIVRANT 154 (312)
T ss_pred CCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeec-chHHHHHH
Confidence 9999999999999999999999999999999999999999999998 899999999999999999965 99999999
Q ss_pred HHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh---cCCc
Q psy12825 330 LLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL---KGYT 405 (488)
Q Consensus 330 ~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~---kg~t 405 (488)
+||++++++|++|+++||||||+ +++|+||++++ .+. +++++++++.+++++++++|++. ||++
T Consensus 155 ~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~--~~~----------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t 222 (312)
T TIGR01772 155 FVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPG--KVL----------FTEDQLEALIHRIQNAGTEVVKAKAGAGSA 222 (312)
T ss_pred HHHHHhCCCHHHeEEEEEEecCCCccccccccccc--cCC----------CCHHHHHHHHHHHHHHHHHHHhCccCCCCh
Confidence 99999999999999999999987 99999999973 221 23455889999999999999996 5899
Q ss_pred chhhHHHHHHHHHHHH---cCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHHH
Q psy12825 406 SWALGLSVASISHTLL---NNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATIS 481 (488)
Q Consensus 406 ~~s~A~a~~~ii~aIl---~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i~ 481 (488)
+||+|.++++++++|+ .|++.++|+ ++++|+||. +|+|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus 223 ~~~ia~a~~~iv~ail~~~~d~~~v~~~-s~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~ 300 (312)
T TIGR01772 223 TLSMAFAGARFVLSLVRGLKGEEGVVEC-AYVESDGVT-EATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELK 300 (312)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCccEEEE-EEEccCCCc-CceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 478899994 588999985 6999999999999999999999 999999999999999999
Q ss_pred HHHH
Q psy12825 482 QIQK 485 (488)
Q Consensus 482 ~~~~ 485 (488)
+.++
T Consensus 301 ~~~~ 304 (312)
T TIGR01772 301 KNIK 304 (312)
T ss_pred HHHH
Confidence 7664
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-58 Score=463.59 Aligned_cols=287 Identities=26% Similarity=0.384 Sum_probs=259.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-C-C--ccccCCCcEEEEe
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-S-D--IAMSEGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-t-d--~eal~dADiVIit 252 (488)
+||+|||| |.||+++|+.|+.+++.+||+|+|++ +++|.++||+|+.. ..++..+ + | |++++|||+||++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~---~~~i~~~~~~~~~y~~~~daDivvit 75 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT---PAKVTGYLGPEELKKALKGADVVVIP 75 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC---cceEEEecCCCchHHhcCCCCEEEEe
Confidence 59999999 99999999999999999999999999 88999999999862 3466643 3 3 7999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhH----HHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVL----TYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~----t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
+|.|++||++|.|++..|+++++++++.|.+++|++|+|++|||+|+| ++++++.+++|++||||+| .||++|++
T Consensus 76 aG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~-~LDs~R~~ 154 (310)
T cd01337 76 AGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVT-TLDVVRAN 154 (310)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeee-chHHHHHH
Confidence 999999999999999999999999999999999999999999999987 8899999999999999995 69999999
Q ss_pred HHHHHHhCCCCCCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh---cCC
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL---KGY 404 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~---kg~ 404 (488)
+++|+++|++|++|+++||||| |++++|+||++.+ +.+ ++++.++++.+++++++++|++. ||+
T Consensus 155 ~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~ 222 (310)
T cd01337 155 TFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQP----PFT--------FDQEEIEALTHRIQFGGDEVVKAKAGAGS 222 (310)
T ss_pred HHHHHHhCcCHHHEEEEEEecCCCCceecccccccc----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccCCCC
Confidence 9999999999999999999999 8999999999964 221 23455889999999999999997 489
Q ss_pred cchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHH
Q psy12825 405 TSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i 480 (488)
++||+|.++++++++|++| ++.+++++ +.+|+ |. +|+|+|+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus 223 t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i 299 (310)
T cd01337 223 ATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VT-EAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPEL 299 (310)
T ss_pred cchhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CC-CceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999955 55677777 77775 64 5899999999999999999999 69999999999999999
Q ss_pred HHHHH
Q psy12825 481 SQIQK 485 (488)
Q Consensus 481 ~~~~~ 485 (488)
++.++
T Consensus 300 ~~~~~ 304 (310)
T cd01337 300 KKNIE 304 (310)
T ss_pred HHHHh
Confidence 97654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00135 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=459.57 Aligned_cols=278 Identities=18% Similarity=0.246 Sum_probs=255.4
Q ss_pred eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHH
Q psy12825 204 NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPK 280 (488)
Q Consensus 204 el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~ 280 (488)
.|+|+|+++ +++++.++||.|++... ...+..++| |++++|||+||+++|.++++|++|.|++..|+++++++++.
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~-~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~ 93 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPL-LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA 93 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHh-cCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 799999999 99999999999987311 225555566 89999999999999999999999999999999999999999
Q ss_pred Hhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCc-eeEEEeecCCCccccc
Q psy12825 281 IAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV-HGFIIGEHGDSSVPVW 358 (488)
Q Consensus 281 I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V-~~~V~G~HG~~~vp~~ 358 (488)
|.++ +|++++|++|||+|+||+++++.+++|++|+||+||.||++|++++||++++++|++| +++||||||++++|+|
T Consensus 94 i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~ 173 (309)
T PLN00135 94 LEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDV 173 (309)
T ss_pred HHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCCceeecc
Confidence 9996 8999999999999999999999999999999999999999999999999999999999 6899999999999999
Q ss_pred cccee----cCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh-cCCcchhhHHHHHHHHHHHHc--CCCcEEEEE
Q psy12825 359 SGVNV----AGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL-KGYTSWALGLSVASISHTLLN--NTNKIHAVS 431 (488)
Q Consensus 359 S~a~v----~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~-kg~t~~s~A~a~~~ii~aIl~--~~~~v~~vs 431 (488)
|++++ +|+|+.++... ++..++++.+++++++++|++. ||+++||+|.++++++++|++ +++.++|+|
T Consensus 174 S~a~v~~~~~g~p~~e~~~~-----~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~vs 248 (309)
T PLN00135 174 NHATVKTPSGEKPVRELVAD-----DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMG 248 (309)
T ss_pred ccceEecCCCCcCHHHHhCc-----hhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEEE
Confidence 99999 99999887421 0112578999999999999997 789999999999999999998 679999999
Q ss_pred eeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 432 TLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 432 v~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++.+|+||+|+|+|||+||+++++|++.+.+++|+++|+++|++|+++|++..+.+
T Consensus 249 v~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l~L~~~E~~~l~~S~~~lk~~~~~~ 304 (309)
T PLN00135 249 VYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEEKELA 304 (309)
T ss_pred EEecCccCCcCCeEEEEEEEEECCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988999999999999999999899999999999999999999776543
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=459.27 Aligned_cols=306 Identities=21% Similarity=0.273 Sum_probs=275.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dA 246 (488)
++.||+|+|| |.+|+++++.|+.+++.+ +|+|+|+++ +.+++.++|+.|+.... ...+..+++ +++++||
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~-~~~~~~~~~~~~~l~~a 79 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPL-LKSVVATTDPEEAFKDV 79 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccc-cCCceecCCHHHHhCCC
Confidence 4689999999 999999999999988764 999999955 55788899999976311 224554566 5899999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||+++|.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+||+++++.+ ++|+++ ||+||.||+
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~-ig~gt~LDs 158 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKEN-FTALTRLDH 158 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHH-EEeeehHHH
Confidence 999999999999999999999999999999999999996 79999999999999999999995 777777 999999999
Q ss_pred HHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceec----CccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 325 MRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVA----GVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~----g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
.|+++++|++++++|.+|+. +||||||++++|+||+++++ |+|+.++... +...++++.+++++++++|+
T Consensus 159 ~R~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~-----~~~~~~~i~~~v~~~g~~Ii 233 (325)
T cd01336 159 NRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKD-----DAWLNGEFISTVQKRGAAVI 233 (325)
T ss_pred HHHHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcc-----cchhHHHHHHHHHhhHHHHH
Confidence 99999999999999999975 69999999999999999999 9999887532 01125789999999999999
Q ss_pred Hh-cCCcchhhHHHHHHHHHHHHcC--CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHH
Q psy12825 400 KL-KGYTSWALGLSVASISHTLLNN--TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476 (488)
Q Consensus 400 ~~-kg~t~~s~A~a~~~ii~aIl~~--~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~s 476 (488)
+. +|++.|++|.++++++++|++| ++.++|+|++.+|+||+|+|+|||+||++|++|+.++.+++|+++|+++|++|
T Consensus 234 ~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s 313 (325)
T cd01336 234 KARKLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDAT 313 (325)
T ss_pred HccccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHH
Confidence 96 6799999999999999999998 48999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q psy12825 477 AATISQIQKGLL 488 (488)
Q Consensus 477 a~~i~~~~~~~~ 488 (488)
++.|++.++.+|
T Consensus 314 ~~~l~~e~~~~~ 325 (325)
T cd01336 314 AKELVEEKETAL 325 (325)
T ss_pred HHHHHHHHHhhC
Confidence 999999988765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-55 Score=446.47 Aligned_cols=291 Identities=27% Similarity=0.389 Sum_probs=265.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC----ccccCCCc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD----IAMSEGSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd----~eal~dAD 247 (488)
+..++.||+|||| |.||+++++.|+..++.++|+|+|+ +.+++.++||+|... ...+...+| +++++|||
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di--~~~~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l~gaD 78 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI--VGAPGVAADLSHIDT---PAKVTGYADGELWEKALRGAD 78 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec--CCCcccccchhhcCc---CceEEEecCCCchHHHhCCCC
Confidence 4557789999999 9999999999998899999999999 567888999999753 345554444 78999999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHH----HhcCCCCCcEEeecCChH
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISW----KLSGFPKNRVIGSGTNLD 323 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~----k~sg~p~~rViG~gt~ld 323 (488)
+||+++|.+++++++|.+++..|+++++++++.|.+++|+++++++|||+|+++++++ +.+++||+||||+|+ ||
T Consensus 79 vVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~-LD 157 (321)
T PTZ00325 79 LVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTT-LD 157 (321)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechh-HH
Confidence 9999999999999999999999999999999999999999999999999999999995 889999999999975 99
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc
Q psy12825 324 SMRFRVLLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK 402 (488)
Q Consensus 324 s~R~~~~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k 402 (488)
++|++++||+++|++|++|+++||||||+ +++|+||++ |.|+ ++++++++.+++++++++|++.|
T Consensus 158 s~R~r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~---g~~l-----------~~~~~~~i~~~v~~~g~~Ii~~k 223 (321)
T PTZ00325 158 VVRARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQT---GLSL-----------PEEQVEQITHRVQVGGDEVVKAK 223 (321)
T ss_pred HHHHHHHHHHHhCcChhheEEEEEeecCCcccccchhcc---CCCC-----------CHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999 899999998 6664 24568899999999999999976
Q ss_pred ---CCcchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHH
Q psy12825 403 ---GYTSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRK 475 (488)
Q Consensus 403 ---g~t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~ 475 (488)
|+++||+|+++++++++|++| ++.+++++ +.+|+||. .|+|+|+||++|++|++++++ ++|+++|+++|++
T Consensus 224 ~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~ 301 (321)
T PTZ00325 224 EGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRP-ECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEA 301 (321)
T ss_pred cCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHH
Confidence 799999999999999999965 78899885 88999996 599999999999999999999 8999999999999
Q ss_pred HHHHHHHHHH
Q psy12825 476 SAATISQIQK 485 (488)
Q Consensus 476 sa~~i~~~~~ 485 (488)
|++.|++.++
T Consensus 302 S~~~i~~~~~ 311 (321)
T PTZ00325 302 AVPDLKKNIE 311 (321)
T ss_pred HHHHHHHHHH
Confidence 9999997664
|
|
| >TIGR01756 LDH_protist lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=443.43 Aligned_cols=277 Identities=18% Similarity=0.266 Sum_probs=249.2
Q ss_pred eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHH
Q psy12825 204 NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPK 280 (488)
Q Consensus 204 el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~ 280 (488)
.|+|+|+++ ++++|.++||.|+. ++.......++|+ ++++|||+||+++|.|+++|++|.|++..|+++++++++.
T Consensus 17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~ 95 (313)
T TIGR01756 17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEA 95 (313)
T ss_pred EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 799999988 99999999999997 4433233446677 6999999999999999999999999999999999999999
Q ss_pred HhccCCC-cEEEEEeCCchhHHHHH-HHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeE-EEeecCCCcccc
Q psy12825 281 IAKGSPD-CILLIISNPVDVLTYIS-WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGF-IIGEHGDSSVPV 357 (488)
Q Consensus 281 I~~~~p~-a~vIv~TNPvdi~t~~~-~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~-V~G~HG~~~vp~ 357 (488)
|++++|+ +++|++|||+|+||+++ ++.+|||++ +||+||.||++|++++||++++++|++|+.+ ||||||++++|+
T Consensus 96 i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~s~vp~ 174 (313)
T TIGR01756 96 LSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVAD 174 (313)
T ss_pred HHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCCceeec
Confidence 9999955 88999999999999999 699999998 9999999999999999999999999999765 999999999999
Q ss_pred ccccee--cCccccccCCCCCCCCChH-HHHHHHHHHhhhHHHHHHhcCCcchhhH-HHHHHHHHHHHc--CCCcEEEEE
Q psy12825 358 WSGVNV--AGVTLKELNPTIGTEQDTE-NFVRLHADVVNSAYEVIKLKGYTSWALG-LSVASISHTLLN--NTNKIHAVS 431 (488)
Q Consensus 358 ~S~a~v--~g~pl~e~~~~~~~~~~~~-~~~el~~~v~~~~~eIi~~kg~t~~s~A-~a~~~ii~aIl~--~~~~v~~vs 431 (488)
||++++ +|.|+..+ .. ++++ .++++.+++++++++|++.||+++|+++ .++++++++|++ ++++++|+|
T Consensus 175 ~S~~~V~~~G~~~~~~-~~----~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pvs 249 (313)
T TIGR01756 175 LTHAEFTKNGKHQKVF-DE----LCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSMG 249 (313)
T ss_pred ccccEEecCCeehhHh-hh----cCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 999999 99886554 11 1221 3578999999999999999999999987 699999999999 567999999
Q ss_pred eeec--CcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 432 TLIQ--GHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 432 v~~~--G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++.+ |+||+|+|+++|+||++|++|++++++ ++|+++|+++|++|+++|++..+.+
T Consensus 250 v~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~~ 308 (313)
T TIGR01756 250 IPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERETA 308 (313)
T ss_pred EEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 399998899999999999999999999 9999999999999999999776543
|
This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=437.70 Aligned_cols=290 Identities=24% Similarity=0.362 Sum_probs=260.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCC---ccccCCCcEE
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSD---IAMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd---~eal~dADiV 249 (488)
-++.||+|||| |.||+++++.|+.+++.+||+|+|+++ +++.++||.|+.. ...+.. +++ +++++|||+|
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiV 90 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLV 90 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEE
Confidence 34579999999 999999999999999999999999988 7888999999864 224432 233 5899999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch----hHHHHHHHhcCCCCCcEEeecCChHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD----VLTYISWKLSGFPKNRVIGSGTNLDSM 325 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd----i~t~~~~k~sg~p~~rViG~gt~lds~ 325 (488)
|+++|.+++||++|.|++..|+++++++++.+.+++|+++++++|||+| ++++++++.+++||+||||++ .||++
T Consensus 91 VitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~-~LDs~ 169 (323)
T PLN00106 91 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT-TLDVV 169 (323)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe-cchHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999996 59999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh---
Q psy12825 326 RFRVLLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--- 401 (488)
Q Consensus 326 R~~~~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--- 401 (488)
|+++++|+++|+++.+|+++|+|+||+ +|+|+||++.+ ..+ +++++++++.+++++++++|++.
T Consensus 170 Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~~ 237 (323)
T PLN00106 170 RANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATP----KVS--------FTDEEIEALTKRIQNGGTEVVEAKAG 237 (323)
T ss_pred HHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhccee----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccC
Confidence 999999999999999999999999965 99999999954 211 23556889999999999999997
Q ss_pred cCCcchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHH
Q psy12825 402 KGYTSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSA 477 (488)
Q Consensus 402 kg~t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa 477 (488)
||+++||+|.++++++++|+++ ++.++|++ +.+|+| .+++|||+||+||++|+++++++ +|+++|+++|++|+
T Consensus 238 kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~ 314 (323)
T PLN00106 238 AGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--TELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALK 314 (323)
T ss_pred CCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--CCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999995 66899999 666664 33499999999999999999998 99999999999999
Q ss_pred HHHHHHHH
Q psy12825 478 ATISQIQK 485 (488)
Q Consensus 478 ~~i~~~~~ 485 (488)
+.|++.++
T Consensus 315 ~~i~~~~~ 322 (323)
T PLN00106 315 PELKASIE 322 (323)
T ss_pred HHHHHHhh
Confidence 99998765
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=429.03 Aligned_cols=287 Identities=29% Similarity=0.432 Sum_probs=256.5
Q ss_pred ceEEEEec-ccchHHHHHHHHH-cCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE--cCC-ccccCCCcEEEEe
Q psy12825 178 QKITVVGA-GQVGMACTYSILT-QGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES--GSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~-~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~--ttd-~eal~dADiVIit 252 (488)
|||+|||| |.+|+++++.+.. .+...+|+|+|+++. .++.++|+.|.. ....+.. .+| +++++|+|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~---~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIP---TAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCC---CCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 69999999 9999999998866 466789999999854 667788998741 1234443 356 6899999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHH----HhcCCCCCcEEeecCChHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISW----KLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~----k~sg~p~~rViG~gt~lds~R~~ 328 (488)
+|.++++|++|.+++..|+++++++++.|++++|+++++++|||+|+||++++ +++|+|++||||+| .||++|++
T Consensus 77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~-~Lds~R~~ 155 (312)
T PRK05086 77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-TLDVIRSE 155 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeee-cHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 89999999999995 59999999
Q ss_pred HHHHHHhCCCCCCceeEEEeecCC-CcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc---CC
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEHGD-SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK---GY 404 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~HG~-~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k---g~ 404 (488)
+++|++++++|++|+++||||||+ +++|+||++ +|.|+ ++++++++.+++++++++|++.| |+
T Consensus 156 ~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~--~g~~l-----------~~~~~~~i~~~v~~~g~~ii~~k~~~g~ 222 (312)
T PRK05086 156 TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSF-----------TEQEVADLTKRIQNAGTEVVEAKAGGGS 222 (312)
T ss_pred HHHHHHhCCChhheEEEEEEecCCCceecccccc--CCccC-----------CHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999976 999999999 77765 23458899999999999999987 89
Q ss_pred cchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHH
Q psy12825 405 TSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i 480 (488)
++||+|.++++++++|+.+ ++.++|++ +.+|+ |. .++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus 223 t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i 299 (312)
T PRK05086 223 ATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GK-YARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTL 299 (312)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CC-cceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999954 77899966 77876 64 5899999999999999999998 99999999999999999
Q ss_pred HHHHH
Q psy12825 481 SQIQK 485 (488)
Q Consensus 481 ~~~~~ 485 (488)
++.++
T Consensus 300 ~~~~~ 304 (312)
T PRK05086 300 KKDIA 304 (312)
T ss_pred HHHHH
Confidence 97653
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=417.04 Aligned_cols=258 Identities=42% Similarity=0.694 Sum_probs=243.7
Q ss_pred EEEEec-ccchHHHHHHHHHcC--CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEeccc
Q psy12825 180 ITVVGA-GQVGMACTYSILTQG--IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITAGV 255 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~--l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIitag~ 255 (488)
|+|||| |.+|.++++.|+..+ ...+|+|+|++++++++.++|++|........+++.++| +++++|||+||++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999998 778999999999999999999999864332467888888 6899999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++++++|+|++||||+|| +|+.|+++++|+++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~-ld~~r~~~~la~~l 159 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKL 159 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeec-chHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
++++++|+++|||+||++++|+||+++ +|.++++
T Consensus 160 ~v~~~~v~~~v~G~hg~~~~~~~s~~~----------------------------------------------~a~~~~~ 193 (263)
T cd00650 160 GVDPDDVKVYILGEHGGSQVPDWSTVR----------------------------------------------IATSIAD 193 (263)
T ss_pred CCCccceEEEEEEcCCCceEeccccch----------------------------------------------HHHHHHH
Confidence 999999999999999999999999862 6678899
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHH
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~ 484 (488)
++++|++|++.++|++++++|+||+|+|++||+||+++++|++++++++|+++|+++|+++++.++..+
T Consensus 194 ii~ai~~~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 194 LIRSLLNDEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHHHHHcCCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998899999999999999999998764
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG1494|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=352.95 Aligned_cols=291 Identities=25% Similarity=0.389 Sum_probs=251.9
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-C--c-cccCCCc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-D--I-AMSEGSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d--~-eal~dAD 247 (488)
...+..||+|+|| |.+|+.+...|-+..+.+++.|||+.. ..|.+.||+|+.. ...+...+ + + .++++||
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~--~~GVaaDlSHI~T---~s~V~g~~g~~~L~~al~~ad 98 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN--TPGVAADLSHINT---NSSVVGFTGADGLENALKGAD 98 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeeccc--CCcccccccccCC---CCceeccCChhHHHHHhcCCC
Confidence 5667889999999 999999888887788899999999974 5789999999853 33444332 2 3 5899999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch----hHHHHHHHhcCCCCCcEEeecCChH
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD----VLTYISWKLSGFPKNRVIGSGTNLD 323 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd----i~t~~~~k~sg~p~~rViG~gt~ld 323 (488)
+|||.+|+||||||+|+|+|..|+.|+++++..+.++||++.+.++|||+| +.++++++..-|+|+|+||+ |.||
T Consensus 99 vVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV-TtLD 177 (345)
T KOG1494|consen 99 VVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV-TTLD 177 (345)
T ss_pred EEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceece-ehhh
Confidence 999999999999999999999999999999999999999999999999998 66788888888999999999 9999
Q ss_pred HHHHHHHHHHHhCCCC-CCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 324 SMRFRVLLAQKLGLSP-ESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 324 s~R~~~~lA~~Lgv~p-~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
..|+++++++.++++| ++++++|+|+| |.+.+|++|+... .+ .+++++++.++.+++.+|.||++.
T Consensus 178 vVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p----------~~--~~~~~~~~~Lt~RiQ~gGtEVV~A 245 (345)
T KOG1494|consen 178 VVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKP----------PF--RFTDDEIEALTHRIQNGGTEVVKA 245 (345)
T ss_pred hhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCC----------cc--cCCHHHHHHHHHHHHhCCceEEEe
Confidence 9999999999999999 55999999999 7899999999852 11 356888999999999999999988
Q ss_pred c---CCcchhhHHHHHHHHHHHHcCC-C-cEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHH
Q psy12825 402 K---GYTSWALGLSVASISHTLLNNT-N-KIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLR 474 (488)
Q Consensus 402 k---g~t~~s~A~a~~~ii~aIl~~~-~-~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~ 474 (488)
| |++.+++|++.+++.++++.+. + +-..-+.|+... ++++ ||+.|+++|++|++++.. .+|+++|++.|+
T Consensus 246 KaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~---fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~ 322 (345)
T KOG1494|consen 246 KAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELP---FFATPVTLGKKGVEEVLGLGKLSDYEEKALE 322 (345)
T ss_pred ccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCcc---ceeceEEecCCceeeecCCCccCHHHHHHHH
Confidence 7 7889999999999999988742 1 222334556554 5654 999999999999999998 599999999999
Q ss_pred HHHHHHHHHH
Q psy12825 475 KSAATISQIQ 484 (488)
Q Consensus 475 ~sa~~i~~~~ 484 (488)
.+..+|++.+
T Consensus 323 ~~~~eLk~sI 332 (345)
T KOG1494|consen 323 AAKPELKKSI 332 (345)
T ss_pred HHHHHHHHHH
Confidence 9999999665
|
|
| >KOG1496|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=337.39 Aligned_cols=301 Identities=21% Similarity=0.268 Sum_probs=269.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCC-----CCeEEEEeCC--hhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGI-----YSNFCLIDSN--EDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l-----~~el~L~Di~--~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dA 246 (488)
.+.+|.|.|| |.+|+++.+.++.+.. .-.++|+|+. .+.++|..++|+|++ ++....+..++|. ++|+|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhccC
Confidence 5679999998 9999999999987632 3479999994 478999999999997 6777788888887 799999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+.|...+.||++||+|.|++..|.+|++..+..+++|+ |+.++++++||+|.++.++.++. .+|.+++-.+ |.||+
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~l-TRLDh 160 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSAL-TRLDH 160 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhh-hhhch
Confidence 999999999999999999999999999999999999994 89999999999999999998876 7999998888 99999
Q ss_pred HHHHHHHHHHhCCCCCCce-eEEEeecCCCcccccccceecC----ccccccCCCCCCCCChHHH--HHHHHHHhhhHHH
Q psy12825 325 MRFRVLLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAG----VTLKELNPTIGTEQDTENF--VRLHADVVNSAYE 397 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g----~pl~e~~~~~~~~~~~~~~--~el~~~v~~~~~e 397 (488)
+|+..+||.++|++.++|+ .++||||+.+|||++.++++++ .|+.+.+. ++.| .+|.+.|++||..
T Consensus 161 NRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~-------d~~wL~g~Fi~tVQkRGaa 233 (332)
T KOG1496|consen 161 NRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVK-------DDAWLQGEFIETVQKRGAA 233 (332)
T ss_pred hhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhc-------cchhhccchhhHHHhcchH
Confidence 9999999999999999997 5899999999999999999976 66766543 4556 5699999999999
Q ss_pred HHHhcCCc-chhhHHHHHHHHHHHHcC--CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHH
Q psy12825 398 VIKLKGYT-SWALGLSVASISHTLLNN--TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKL 473 (488)
Q Consensus 398 Ii~~kg~t-~~s~A~a~~~ii~aIl~~--~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L 473 (488)
+++.++.+ .++.|.++++-|+.|+.+ ++++++++|+++|.||+|+|..||+||++ ++|-|++++ ++++++-++++
T Consensus 234 vi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km 312 (332)
T KOG1496|consen 234 VIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKM 312 (332)
T ss_pred hhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhh
Confidence 99887655 467788999999999876 57999999999999999999999999999 579999998 79999999999
Q ss_pred HHHHHHHHHHHHh
Q psy12825 474 RKSAATISQIQKG 486 (488)
Q Consensus 474 ~~sa~~i~~~~~~ 486 (488)
..++++|.+..+.
T Consensus 313 ~~t~~EL~eEkd~ 325 (332)
T KOG1496|consen 313 DLTAKELKEEKDL 325 (332)
T ss_pred hhhHHHHHHhHHH
Confidence 9999999977654
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=316.16 Aligned_cols=291 Identities=19% Similarity=0.205 Sum_probs=219.3
Q ss_pred CceEEEEecccchHHHHH--HHH-HcCCC-CeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCC-ccccCCCcEEE
Q psy12825 177 DQKITVVGAGQVGMACTY--SIL-TQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSD-IAMSEGSRIVI 250 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~--~La-~~~l~-~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd-~eal~dADiVI 250 (488)
++||+|||||++|++.++ .++ ..++. .+|+|+|+++++++.....+.+.... ....+++.++| +++++||||||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 369999999999988766 665 34554 49999999999988433336555322 23468888899 58999999999
Q ss_pred Eecccc-cCCC--------------cchHhh--------HhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHh
Q psy12825 251 ITAGVR-SLVG--------------ETRLQL--------VDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKL 307 (488)
Q Consensus 251 itag~~-~k~G--------------~~r~dl--------l~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~ 307 (488)
++++++ .+++ ++|.+. +.+|++++++++++|+++||++|+|++|||++++|++++
T Consensus 81 ~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-- 158 (431)
T PRK15076 81 NAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-- 158 (431)
T ss_pred EeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh--
Confidence 999886 4444 456677 899999999999999999999999999999999999987
Q ss_pred cCCCCCcEEeec-CChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccC-------------
Q psy12825 308 SGFPKNRVIGSG-TNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELN------------- 372 (488)
Q Consensus 308 sg~p~~rViG~g-t~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~------------- 372 (488)
++|+.||||++ +.+++ .+.+|+.+|+++++|+.++.| || +.|+.+.+.+|+++...+
T Consensus 159 -~~~~~rviG~c~~~~~~---~~~ia~~l~v~~~~v~~~~~GlNH----~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~ 230 (431)
T PRK15076 159 -RYPGIKTVGLCHSVQGT---AEQLARDLGVPPEELRYRCAGINH----MAWYLELERKGEDLYPELRAAAAEGQTRCQD 230 (431)
T ss_pred -cCCCCCEEEECCCHHHH---HHHHHHHhCCCHHHeEEEEEeecc----hhhheeeeECCcchHHHHHHHHhccCchhcc
Confidence 57788999996 66665 388999999999999999999 99 788888887775543110
Q ss_pred -------------CC--------CCCCC----ChHHHHHHH----HHHh------hhHHHHH-HhcCCcch---hhHHHH
Q psy12825 373 -------------PT--------IGTEQ----DTENFVRLH----ADVV------NSAYEVI-KLKGYTSW---ALGLSV 413 (488)
Q Consensus 373 -------------~~--------~~~~~----~~~~~~el~----~~v~------~~~~eIi-~~kg~t~~---s~A~a~ 413 (488)
+. +..++ .++..++.. +..+ ....+.+ ..++...| ..+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a 310 (431)
T PRK15076 231 KVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSREYA 310 (431)
T ss_pred cccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccchHHH
Confidence 00 00011 222222211 1000 1111111 12232122 134578
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
+++++||.+|.+.++.++|.|+|. .|+|+|.++++||+|+++|++|+...+||+..+++++.-.
T Consensus 311 ~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~g~lP~~~~~l~~~~~ 375 (431)
T PRK15076 311 STIIEAIETGEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKVGDLPPQLAALNRTNI 375 (431)
T ss_pred HHHHHHHhcCCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeecCCCCHHHHHHHHHHH
Confidence 999999999999999999999998 7999999999999999999999988999999999877643
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=310.52 Aligned_cols=287 Identities=21% Similarity=0.218 Sum_probs=213.2
Q ss_pred ceEEEEecccchHH--HHHHHHHcC--C-CCeEEEEeCChhHHHHHHHHHhhcC--CCCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMA--CTYSILTQG--I-YSNFCLIDSNEDRCKGEMLDLQHGA--PFLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~--ia~~La~~~--l-~~el~L~Di~~e~l~g~~~dL~~~~--~~~~~~~v~~ttd~-eal~dADiV 249 (488)
+||+|||||+. ++ +...|+... + .++|+|+|+|+++++. +..+.+.. ......++..|+|+ +||+|||||
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV 78 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV 78 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence 69999999995 33 344444432 4 4799999999998875 33333221 12235688999998 799999999
Q ss_pred EEecccc------------cCCCc---c-----hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcC
Q psy12825 250 IITAGVR------------SLVGE---T-----RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSG 309 (488)
Q Consensus 250 Iitag~~------------~k~G~---~-----r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg 309 (488)
|.+..+. .++|. + ......+|++++++++++|+++||++|+||+|||++++|+++++++
T Consensus 79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~- 157 (425)
T cd05197 79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV- 157 (425)
T ss_pred EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC-
Confidence 9997543 23432 1 3445689999999999999999999999999999999999999984
Q ss_pred CCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccCC----C----------
Q psy12825 310 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELNP----T---------- 374 (488)
Q Consensus 310 ~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~~----~---------- 374 (488)
|+.||||+++. +.|+++.+|+.+|+++++|+.+|+| ||| +|||+++++|+|+...+. .
T Consensus 158 -p~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~ 230 (425)
T cd05197 158 -PPEKAVGLCNV--PIGVMEIVAKLLGESEEKVDWQYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENP 230 (425)
T ss_pred -CCCcEEEECCC--HHHHHHHHHHHhCCCHHHeEEEEEeccCe----EeeEeEEECCeecHHHHHHHHhccCcccccccc
Confidence 77899999555 8999999999999999999999999 996 999999999987652110 0
Q ss_pred -------C--------C--------CC-CChHHHH----H-----------------HHHHHhhh---H-HHHHHhcCCc
Q psy12825 375 -------I--------G--------TE-QDTENFV----R-----------------LHADVVNS---A-YEVIKLKGYT 405 (488)
Q Consensus 375 -------~--------~--------~~-~~~~~~~----e-----------------l~~~v~~~---~-~eIi~~kg~t 405 (488)
+ + ++ +.+...+ + +.+..+.. . ..-+..++..
T Consensus 231 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~r~~~ 310 (425)
T cd05197 231 FVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKRGGR 310 (425)
T ss_pred ccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhhhcCCc
Confidence 0 0 00 0000001 0 11111000 0 0001111222
Q ss_pred chhhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHH
Q psy12825 406 SWALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476 (488)
Q Consensus 406 ~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~s 476 (488)
. .+..++++++||.+|++.++.++|.|+|. -|+|+|+++++||+|+++|++|+...+||+..+.+++.-
T Consensus 311 ~--~~e~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~vg~lp~~~~~Li~~~ 380 (425)
T cd05197 311 K--YSEAAIPLIRALLNDNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKVGPLDRFVKGLLRQR 380 (425)
T ss_pred c--cHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecccCCCCHHHHHHHHHH
Confidence 2 34568899999999999999999999998 799999999999999999999998889999888877764
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=305.08 Aligned_cols=289 Identities=19% Similarity=0.287 Sum_probs=215.2
Q ss_pred ceEEEEecccchHH-HHHHHHHc--CC-CCeEEEEeCC-hhHHHHHHHHHhhcCC-CCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMA-CTYSILTQ--GI-YSNFCLIDSN-EDRCKGEMLDLQHGAP-FLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~-ia~~La~~--~l-~~el~L~Di~-~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~-eal~dADiVI 250 (488)
+||+|||||++-+. +...|+.. .+ .++|+|+|+| +++++......+.... .....+++.|+|+ +|++||||||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 69999999996322 34455553 23 4899999999 8988754333333221 2235688899998 6899999999
Q ss_pred EecccccCCCcchHh--------------------hHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCC
Q psy12825 251 ITAGVRSLVGETRLQ--------------------LVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGF 310 (488)
Q Consensus 251 itag~~~k~G~~r~d--------------------ll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~ 310 (488)
++++++..++.++++ ...+|++++++++++|+++||++|+|++|||++++|+++++.+
T Consensus 81 ~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~-- 158 (419)
T cd05296 81 TQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT-- 158 (419)
T ss_pred EEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc--
Confidence 999887665554443 3689999999999999999999999999999999999999886
Q ss_pred CCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCcccccc------------------
Q psy12825 311 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKEL------------------ 371 (488)
Q Consensus 311 p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~------------------ 371 (488)
+.||||+ |+. +.|+++.+|+.+|+++++|+.+|+| || +.|+.+.+.+|+++...
T Consensus 159 -~~rviGl-c~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~ 231 (419)
T cd05296 159 -GDRVIGL-CNV-PIGLQRRIAELLGVDPEDVFIDYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLSFEEGLLFG 231 (419)
T ss_pred -cCCEEee-CCc-HHHHHHHHHHHhCCCHHHceEEEEeccc----ceeeeeeeECCcccHHHHHHHhhhccccccccchH
Confidence 5799999 666 4799999999999999999999999 99 77888777777664420
Q ss_pred ---------CCC--CCCC-CChHHHHHHHHHHhhhH-------HHH---------------HHhcCCcchhhHHHHHHHH
Q psy12825 372 ---------NPT--IGTE-QDTENFVRLHADVVNSA-------YEV---------------IKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 372 ---------~~~--~~~~-~~~~~~~el~~~v~~~~-------~eI---------------i~~kg~t~~s~A~a~~~ii 417 (488)
+|. +.++ +.++.+++......+++ .++ +..++...| +..+++++
T Consensus 232 ~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y--~e~a~~ii 309 (419)
T cd05296 232 PELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGY--SEAALALI 309 (419)
T ss_pred HHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcch--HHHHHHHH
Confidence 000 0001 11221121111100011 111 112222233 35689999
Q ss_pred HHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 418 HTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
+||.++.+.++.+||.|+|. .|+|+|+++++||.|+++|++|+...+||+..+++++.-.
T Consensus 310 ~ai~~~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~vg~lP~~~~~l~~~~~ 370 (419)
T cd05296 310 SAIYNDKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPVGPLPPAILGLIQQVK 370 (419)
T ss_pred HHHhcCCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccCCCCCHHHHHHHHHHH
Confidence 99999999999999999998 7999999999999999999999988899999988876543
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=271.40 Aligned_cols=167 Identities=39% Similarity=0.642 Sum_probs=155.9
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
|.||++|++++||+++|++|.+|+++||||||+++||+||+++++|.|+.++.+.. ..+++++++++.+.+++++++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~-~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPS-GKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGEEETTEEHHHHHHTT-TSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCcceeeeeecccccccccccccccc-cchhHHhhhccccccEeccceee
Confidence 67999999999999999999999999999999999999999999999997765322 13567788999999999999999
Q ss_pred Hhc-CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCc-eEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHH
Q psy12825 400 KLK-GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEE-VFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKS 476 (488)
Q Consensus 400 ~~k-g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d-~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~s 476 (488)
+.| |+++||+|+++++++++|+.+.+.++|++++.+|+||++++ +|||+||++|++|++++++ ++|+++|+++|++|
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s 159 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKLKES 159 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999877 9999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhh
Q psy12825 477 AATISQIQKGL 487 (488)
Q Consensus 477 a~~i~~~~~~~ 487 (488)
++.|++.++..
T Consensus 160 a~~l~~~i~~~ 170 (174)
T PF02866_consen 160 AKELKKEIEKG 170 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888654
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T .... |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=293.83 Aligned_cols=290 Identities=17% Similarity=0.202 Sum_probs=212.1
Q ss_pred ceEEEEecccchHH--HHHHHHHc--CC-CCeEEEEeCChhHHHHHHHHHhhcC-C-CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMA--CTYSILTQ--GI-YSNFCLIDSNEDRCKGEMLDLQHGA-P-FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~--ia~~La~~--~l-~~el~L~Di~~e~l~g~~~dL~~~~-~-~~~~~~v~~ttd~-eal~dADiV 249 (488)
+||+|||||+. ++ +...|+.. .+ .++|+|+|+|+++++. +..+.+.. . .....+|+.|+|+ +||+|||||
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfV 78 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADFV 78 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence 69999999995 33 34445544 24 4899999999999875 34443321 1 2235689999997 799999999
Q ss_pred EEecccc------------cCCCc---c-----hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcC
Q psy12825 250 IITAGVR------------SLVGE---T-----RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSG 309 (488)
Q Consensus 250 Iitag~~------------~k~G~---~-----r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg 309 (488)
|++..+. .++|. + ......||++++.+++++|+++||++|+|++|||++++|+++++.
T Consensus 79 i~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~-- 156 (437)
T cd05298 79 FAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL-- 156 (437)
T ss_pred EEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH--
Confidence 9997543 23332 2 234578999999999999999999999999999999999999987
Q ss_pred CCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceec-CccccccCC----C--C------
Q psy12825 310 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVA-GVTLKELNP----T--I------ 375 (488)
Q Consensus 310 ~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~-g~pl~e~~~----~--~------ 375 (488)
+|..||||+ |+... .+...+|+.||+++++|+..+.| || +.|+.+.+.+ |+++...+. . +
T Consensus 157 ~~~~kviGl-C~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~ 230 (437)
T cd05298 157 FPNARILNI-CDMPI-AIMDSMAAILGLDRKDLEPDYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSD 230 (437)
T ss_pred CCCCCEEEE-CCcHH-HHHHHHHHHhCCCHHHceEEEEeecc----hhhhhheEECCCCchHHHHHHHHhccCCCccccc
Confidence 777899999 99864 68999999999999999999999 99 7777777777 755432110 0 0
Q ss_pred ----------------------C---------CCCChHH-HHHHHH-------HHhhhHHHH---HH---hcCCc---ch
Q psy12825 376 ----------------------G---------TEQDTEN-FVRLHA-------DVVNSAYEV---IK---LKGYT---SW 407 (488)
Q Consensus 376 ----------------------~---------~~~~~~~-~~el~~-------~v~~~~~eI---i~---~kg~t---~~ 407 (488)
+ +++..++ .+++.. .+.....+. .+ ..+.. .+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (437)
T cd05298 231 EEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTF 310 (437)
T ss_pred ccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhh
Confidence 0 0000100 011100 000001111 00 00100 11
Q ss_pred ---hhHHHHHHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 408 ---ALGLSVASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 408 ---s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
..|.+++++++||++|++.++++|++|+|.| |+|+|+++|+||+||++|+.++...+||+...++++.-.
T Consensus 311 ~~~~ya~~a~~ii~aI~~d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg~lP~~~~~l~~~~~ 384 (437)
T cd05298 311 HVDVHGEYIVDLAASIAYNTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLMEQQV 384 (437)
T ss_pred hccchHHHHHHHHHHHHcCCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceecccCCCCHHHHHHHHHHH
Confidence 2467899999999999999999999999996 789999999999999999999988999999988877543
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=284.02 Aligned_cols=291 Identities=21% Similarity=0.203 Sum_probs=216.7
Q ss_pred ceEEEEecccchHHHHH--HHHHc-CCC-CeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 178 QKITVVGAGQVGMACTY--SILTQ-GIY-SNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~--~La~~-~l~-~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
+||+|||||++|++.+. .++.. .+. .+|+|+|+++++++....++.+... .....++..++|+ ++++||||||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998766 45543 443 4999999999999988888876532 1234678888996 78999999999
Q ss_pred ecccccCCCcch----------------------HhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcC
Q psy12825 252 TAGVRSLVGETR----------------------LQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSG 309 (488)
Q Consensus 252 tag~~~k~G~~r----------------------~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg 309 (488)
+++.+..++.++ .....+|++++.++++.+.++||++|++++|||++++|+++++.++
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 997654444333 3456799999999999999999999999999999999999999886
Q ss_pred CCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccCC---------------
Q psy12825 310 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELNP--------------- 373 (488)
Q Consensus 310 ~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~~--------------- 373 (488)
.|+||+ |+. +.+++..+|+.+++++++|+.+|+| || +.||.+.+.+|+++...+.
T Consensus 161 ---~rviG~-c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~ 231 (423)
T cd05297 161 ---IKTVGL-CHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLSP 231 (423)
T ss_pred ---CCEEEE-CCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc----HhhhhhheECCcchHHHHHHHHhccCccchhccc
Confidence 589999 443 7889999999999999999999999 99 7777777777655431100
Q ss_pred -------CCC-----------C---C-CCh-HHHHHH----------HHHHhhhHHHHHHhcC------Ccch---hhHH
Q psy12825 374 -------TIG-----------T---E-QDT-ENFVRL----------HADVVNSAYEVIKLKG------YTSW---ALGL 411 (488)
Q Consensus 374 -------~~~-----------~---~-~~~-~~~~el----------~~~v~~~~~eIi~~kg------~t~~---s~A~ 411 (488)
.++ + + +.. +..... .+.....-+.-..... ...+ ..+.
T Consensus 232 ~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 311 (423)
T cd05297 232 VRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGE 311 (423)
T ss_pred chHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhccccccchH
Confidence 000 0 0 000 110000 0000000000000000 0011 1345
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 412 SVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 412 a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
.++++++||.++.+.++.+|+.|+|. .|+|+|+++++||+|+++|++|+...+||...+++++.-.
T Consensus 312 ~a~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~g~lp~~~~~l~~~~~ 378 (423)
T cd05297 312 YASPIIEALVTGKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKIGPLPPQLAALIRPRI 378 (423)
T ss_pred HHHHHHHHHhcCCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecccCCCCHHHHHHHHHHH
Confidence 68999999999999999999999998 7999999999999999999999988999999988877643
|
linked to 3D####ucture |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=277.03 Aligned_cols=295 Identities=19% Similarity=0.233 Sum_probs=211.8
Q ss_pred CCCceEEEEecccchHH-HHHHHHHc--CC-CCeEEEEeCChhHHHHHHHHHhhcC-C-CCCCCcEEEcCCc-cccCCCc
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQ--GI-YSNFCLIDSNEDRCKGEMLDLQHGA-P-FLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~--~l-~~el~L~Di~~e~l~g~~~dL~~~~-~-~~~~~~v~~ttd~-eal~dAD 247 (488)
++..||+||||||.++. +...++.+ .+ ..+|.|+|+++++++ ....+.+.. . .....++..++|+ +||+|||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLK-IIAILAKKLVEEAGAPVKVEATTDRREALEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCC
Confidence 45689999999998776 23333333 23 469999999999998 344444321 1 1234788889997 7999999
Q ss_pred EEEEeccc------------ccCCCcc--------hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHh
Q psy12825 248 IVIITAGV------------RSLVGET--------RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKL 307 (488)
Q Consensus 248 iVIitag~------------~~k~G~~--------r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~ 307 (488)
|||.++.+ |.|+|.- ......|+++++-+|+++|+++||+||++|+|||+.++|+++.++
T Consensus 80 fVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv~r~ 159 (442)
T COG1486 80 FVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAVRRL 159 (442)
T ss_pred EEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHHHHh
Confidence 99999754 3344432 223357999999999999999999999999999999999999997
Q ss_pred cCCCCCcEEeecCChHHHHHHHHHHHHhCCCC-CCceeEEEe-ecCCCcccccccceecCccccccC-------------
Q psy12825 308 SGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELN------------- 372 (488)
Q Consensus 308 sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p-~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~------------- 372 (488)
+ |.-|+||+ |+.. ......+|+.|++++ ++++..+.| || +.||.+.+.+|.++.+-+
T Consensus 160 ~--~~~K~VGl-Ch~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~ 231 (442)
T COG1486 160 Y--PKIKIVGL-CHGP-IGIAMELAEVLGLEPREDLRYRVAGLNH----MVWILRVRDDGEDLYPELLEALEEGGSPSEP 231 (442)
T ss_pred C--CCCcEEee-CCch-HHHHHHHHHHhCCCchhceeEEEeechh----hhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence 5 43489999 9875 468999999999976 999999999 99 777777777764432100
Q ss_pred ----------------------CC--CCCCCChHHHH-----HH------HHHHhhhHHHH---------------HHhc
Q psy12825 373 ----------------------PT--IGTEQDTENFV-----RL------HADVVNSAYEV---------------IKLK 402 (488)
Q Consensus 373 ----------------------~~--~~~~~~~~~~~-----el------~~~v~~~~~eI---------------i~~k 402 (488)
+. ..+++.+..+. ++ .+.+.++..+. .+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~ 311 (442)
T COG1486 232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR 311 (442)
T ss_pred ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence 00 00000000000 00 00111111111 1112
Q ss_pred CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 403 g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
+.+.=-++..+++|++||++|++.++.++|.|+|. .|+|+|.++++||.|+++|++++..++||+..+++++....
T Consensus 312 ~~~~~~~~e~a~~ii~Ai~~~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g~lP~~~~~l~~~~i~ 388 (442)
T COG1486 312 IGAGKYSSEYASNIINAIENNKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVGDLPEFVKGLMHTNIN 388 (442)
T ss_pred CCcccccHHHHHHHHHHHhcCCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccCCCCHHHHHHHHHHHH
Confidence 22200123568999999999999999999999998 89999999999999999999998889999999998887643
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=237.88 Aligned_cols=140 Identities=44% Similarity=0.723 Sum_probs=129.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+||+|||| |.+|+++++.|+.+++.+||+|+|++++++++.++|++|...+........+.+|++++|||+||+++|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 69999999 99999999999999999999999999999999999999986533222233447899999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+++|++|.+++..|+++++++++.|.+++|+++++++|||+|++|+++++++++|++||||
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence 9999999999999999999999999999999999999999999999999999999999998
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=177.31 Aligned_cols=153 Identities=25% Similarity=0.272 Sum_probs=113.9
Q ss_pred eEEEEecccchHHH-HHHHHH-c-CC-CCeEEEEeCChhHHHH---HHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 179 KITVVGAGQVGMAC-TYSILT-Q-GI-YSNFCLIDSNEDRCKG---EMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 179 KIaIIGAG~vG~~i-a~~La~-~-~l-~~el~L~Di~~e~l~g---~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
||+|||||++-++. ...++. . .+ .++|+|+|+|+++++. .+..+.+. .....+|..|+|+ +|++||||||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~--~~~~~~v~~ttd~~eAl~gADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEE--AGADLKVEATTDRREALEGADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHH--CTTSSEEEEESSHHHHHTTESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHh--cCCCeEEEEeCCHHHHhCCCCEEE
Confidence 89999999987763 223333 2 23 3599999999999984 23333333 2346789999998 6899999999
Q ss_pred Eeccc------------ccCCCcc----------hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhc
Q psy12825 251 ITAGV------------RSLVGET----------RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLS 308 (488)
Q Consensus 251 itag~------------~~k~G~~----------r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~s 308 (488)
++..+ |.+.|.. ......|+++++.+++++|+++|||||+||+|||+.++|+++.+++
T Consensus 79 ~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~ 158 (183)
T PF02056_consen 79 NQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYT 158 (183)
T ss_dssp E---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHS
T ss_pred EEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhC
Confidence 99754 3454432 2345689999999999999999999999999999999999999886
Q ss_pred CCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 309 GFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 309 g~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
+ ..|++|+ |+.. ......+|+.||.
T Consensus 159 ~--~~k~vGl-Ch~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 159 P--KIKVVGL-CHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp T--TSEEEEE--SHH-HHHHHHHHHHHT-
T ss_pred C--CCCEEEE-CCCH-HHHHHHHHHHhCc
Confidence 4 3589999 9985 4689999999873
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-12 Score=118.51 Aligned_cols=122 Identities=16% Similarity=0.225 Sum_probs=86.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCccccCC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAMSEG 245 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~eal~d 245 (488)
||+|||||.||..+|..++..|+ +|+|||++++.++.....+.+... +. ...++..++|++++.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVD 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCT
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhh
Confidence 79999999999999999999998 999999999888765554444110 00 1457888999988889
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
||+||+++ .++.++++++..+++++||+. .|++||.+.+-..-+..... .|+|++|+
T Consensus 79 adlViEai--------------~E~l~~K~~~~~~l~~~~~~~-~ilasnTSsl~i~~la~~~~-~p~R~ig~ 135 (180)
T PF02737_consen 79 ADLVIEAI--------------PEDLELKQELFAELDEICPPD-TILASNTSSLSISELAAALS-RPERFIGM 135 (180)
T ss_dssp ESEEEE-S---------------SSHHHHHHHHHHHHCCS-TT-SEEEE--SSS-HHHHHTTSS-TGGGEEEE
T ss_pred hheehhhc--------------cccHHHHHHHHHHHHHHhCCC-ceEEecCCCCCHHHHHhccC-cCceEEEE
Confidence 99999996 588999999999999998654 46799988743333333333 24666666
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=123.30 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=108.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C---C------CCCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P---F------LRSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~---~------~~~~~v~~ttd~ea 242 (488)
..+||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+.... . . ....++..++|+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~ 79 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA 79 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH
Confidence 35799999999999999999999767 89999999877665433333221 0 0 12456777888899
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi----- 316 (488)
++|||+||+++ .+|.++.+++.+++++++++. .|+.||++.+ ++.+. +.+.. |+|++
T Consensus 80 l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~-aIlASNTSsl~it~ia-~~~~r-per~iG~HFf 142 (307)
T COG1250 80 LKDADLVIEAV--------------VEDLELKKQVFAELEALAKPD-AILASNTSSLSITELA-EALKR-PERFIGLHFF 142 (307)
T ss_pred hccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCC-cEEeeccCCCCHHHHH-HHhCC-chhEEEEecc
Confidence 99999999996 689999999999999998533 4679999984 44443 33322 34555
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|--|.-++...-..+++.+|..|
T Consensus 143 NP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 143 NPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred CCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 55677788888888899998665
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=116.26 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=102.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------C------CCCCcEEEcCCcccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------F------LRSPKIESGSDIAMS 243 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~------~~~~~v~~ttd~eal 243 (488)
..||+|||+|.||..+|..++..|+ +|+|+|++++.++.....+.+... . ....++..++|++++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 4599999999999999999999998 999999999887764434332210 0 013467778899889
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEE------
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVI------ 316 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi------ 316 (488)
++||+||+++ .++.++.+++...++++| ++. .|++||.+.+....+...+..| +|++
T Consensus 83 ~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~~-~r~~g~hf~~ 146 (286)
T PRK07819 83 ADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKRP-GRVLGLHFFN 146 (286)
T ss_pred CCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCCC-ccEEEEecCC
Confidence 9999999996 588899999999999997 544 5668998874444443333332 3333
Q ss_pred ------------eecCChHHHHHHHHHHH-HhCCCC
Q psy12825 317 ------------GSGTNLDSMRFRVLLAQ-KLGLSP 339 (488)
Q Consensus 317 ------------G~gt~lds~R~~~~lA~-~Lgv~p 339 (488)
|.+|..++...-..+.. .+|..|
T Consensus 147 P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~p 182 (286)
T PRK07819 147 PVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQV 182 (286)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 44555555444444444 466554
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=129.24 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=109.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCcccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAMS 243 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~eal 243 (488)
..||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+..... .. ...++..++|++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh
Confidence 4689999999999999999999998 999999999887653333322110 00 13578888999999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE------
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI------ 316 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi------ 316 (488)
++||+||+++ .+++++++++..+++++||+. .|++||.+.+ +++++. .+.. |+|++
T Consensus 391 ~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la~-~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 391 ERVDVVVEAV--------------VENPKVKAAVLAEVEQKVRED-TILASNTSTISISLLAK-ALKR-PENFCGMHFFN 453 (715)
T ss_pred cCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHHh-hcCC-CccEEEEecCC
Confidence 9999999996 588999999999999998766 6779999884 455543 3333 34455
Q ss_pred ------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 ------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 ------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|..++...-..+++.+|..|-
T Consensus 454 P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv 489 (715)
T PRK11730 454 PVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPI 489 (715)
T ss_pred cccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceE
Confidence 445677776666677788887763
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=115.99 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=104.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C-----CCCCCcEEEcCCc-cccCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P-----FLRSPKIESGSDI-AMSEG 245 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~-----~~~~~~v~~ttd~-eal~d 245 (488)
+.+||+|||+|.||.++|..++..|+ +|+|+|++++.++.....+.+.. . .....++..++++ +++++
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 34689999999999999999999998 99999999886654333222111 0 0112466777788 57899
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE---------
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI--------- 316 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi--------- 316 (488)
||+||+++ .+|.++.+++...+.+++|.. .|+.||.+.+...-+...... |+|++
T Consensus 84 aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~-aIlaSnTS~l~~s~la~~~~~-p~R~~g~HffnP~~ 147 (321)
T PRK07066 84 ADFIQESA--------------PEREALKLELHERISRAAKPD-AIIASSTSGLLPTDFYARATH-PERCVVGHPFNPVY 147 (321)
T ss_pred CCEEEECC--------------cCCHHHHHHHHHHHHHhCCCC-eEEEECCCccCHHHHHHhcCC-cccEEEEecCCccc
Confidence 99999996 588899999999999998766 388999998654444443333 24454
Q ss_pred ---------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 ---------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 ---------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|..++...-..+.+.+|..|
T Consensus 148 ~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 148 LLPLVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 33566666555566666777655
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-10 Score=128.33 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=109.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~ea 242 (488)
+.+||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+..... .. ...+++.++|+++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence 45689999999999999999999998 999999999877653333322110 00 1357888899999
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi----- 316 (488)
++|||+||+++ .+++++++++..+++++||+. .|++||.+.+ +++++ ..+.. |+|++
T Consensus 390 ~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasnTS~l~i~~ia-~~~~~-p~r~ig~Hff 452 (714)
T TIGR02437 390 FDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVRED-AILASNTSTISISLLA-KALKR-PENFCGMHFF 452 (714)
T ss_pred hcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHH-hhcCC-cccEEEEecC
Confidence 99999999996 588999999999999998665 5779999884 44444 33332 34454
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|..++...-..+++.+|..|-
T Consensus 453 ~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv 489 (714)
T TIGR02437 453 NPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPI 489 (714)
T ss_pred CCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 446667776666777888887763
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=128.36 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=110.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~ea 242 (488)
+..||+|||||.||.++|+.++..|+ +|+|+|++++.++.....+.+... .. ...+++.++|+++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG 411 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45689999999999999999999998 999999999887664433332210 00 1357888899999
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi----- 316 (488)
+++||+||+++ .+|.++++++..+++++||+. .|++||.+.+ ++.++ ..+.. |+|++
T Consensus 412 ~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la-~~~~~-p~r~ig~Hff 474 (737)
T TIGR02441 412 FKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPH-CIIASNTSALPIKDIA-AVSSR-PEKVIGMHYF 474 (737)
T ss_pred hccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHH-hhcCC-ccceEEEecc
Confidence 99999999996 689999999999999998765 5679999884 44443 33333 34555
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|..++...-..+++.+|..|
T Consensus 475 ~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 510 (737)
T TIGR02441 475 SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVV 510 (737)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 44577777766777888888766
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-10 Score=125.71 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=108.3
Q ss_pred CCceEEEEecccchHHHHHHHHH-cCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCcc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILT-QGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIA 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~-~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~e 241 (488)
+.+||+|||||.||..+|+.++. .|+ +|+|+|++++.++.....+..... .. ...+|+.++|++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 380 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR 380 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH
Confidence 34689999999999999999985 788 999999999877654433322110 00 135788889999
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE----
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI---- 316 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi---- 316 (488)
+++|||+||+++ .++.++++++..+++++|++. .|++||.+.+ +++++. .... |+|++
T Consensus 381 ~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~i~~la~-~~~~-p~r~~g~Hf 443 (699)
T TIGR02440 381 GFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAH-TIFASNTSSLPIGQIAA-AASR-PENVIGLHY 443 (699)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCHHHHHH-hcCC-cccEEEEec
Confidence 999999999996 588999999999999998766 6779999884 444443 2322 34454
Q ss_pred --------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 --------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 --------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|+.++...-..+.+.+|..|-
T Consensus 444 fnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv 481 (699)
T TIGR02440 444 FSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPI 481 (699)
T ss_pred CCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 445777676666777788887763
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-10 Score=125.15 Aligned_cols=146 Identities=18% Similarity=0.234 Sum_probs=108.8
Q ss_pred CCceEEEEecccchHHHHHHHH-HcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCcc
Q psy12825 176 PDQKITVVGAGQVGMACTYSIL-TQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDIA 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La-~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~e 241 (488)
+.+||+|||||.||.++|..++ ..|+ +|+|+|++++.++.....+.+... .. ...+|+.++|++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 385 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR 385 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH
Confidence 3578999999999999999999 7788 999999998877654333332210 00 135788889999
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE----
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI---- 316 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi---- 316 (488)
+++|||+||+++ .+|.++++++..++++++++. .|+.||.+.+ +++++. .... |+|++
T Consensus 386 ~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~-~ilasnTS~l~i~~la~-~~~~-p~r~ig~Hf 448 (708)
T PRK11154 386 GFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPH-TIFASNTSSLPIGQIAA-AAAR-PEQVIGLHY 448 (708)
T ss_pred HhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHH-hcCc-ccceEEEec
Confidence 999999999996 689999999999999998655 5679999884 444443 3332 34444
Q ss_pred --------------eecCChHHHHHHHHHHHHhCCCCC
Q psy12825 317 --------------GSGTNLDSMRFRVLLAQKLGLSPE 340 (488)
Q Consensus 317 --------------G~gt~lds~R~~~~lA~~Lgv~p~ 340 (488)
|-.|+.++...-..+++.+|..|-
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv 486 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPI 486 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 456777776666777788887763
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=105.84 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=86.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH-------HHhhcCCCC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML-------DLQHGAPFL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~-------dL~~~~~~~------~~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||.+++..++..+. +|+++|+++++++.... .+.+..... ...++..++|+++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 79 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD 79 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 35689999999999999999999987 89999999988753211 111110000 1135677788888
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+++||+||+++ .++..+.+++.+++.+++++.. +++||.+.+-...+.+..+.| .|++|
T Consensus 80 ~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~-il~s~ts~~~~~~la~~~~~~-~r~ig 138 (282)
T PRK05808 80 LKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEA-ILATNTSSLSITELAAATKRP-DKVIG 138 (282)
T ss_pred hccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHHhhCCC-cceEE
Confidence 99999999996 4667788899999999876542 348888875444444444333 34554
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=115.35 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=103.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----CCC---------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----PFL---------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~~~---------~~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||..+|..++..|+ +|++||++++.++.....+.+.. ... ...+++.++|+++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 81 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA 81 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH
Confidence 45789999999999999999999998 99999999998865433322211 000 1245777889988
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhH-HHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVL-TYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~-t~~~~k~sg~p~~rVi----- 316 (488)
+++||+||+++ .++..+.+.+...+++++|+. .|++||.+.+- ++++.. ... |.|++
T Consensus 82 l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~-~IlasnTStl~i~~iA~~-~~~-p~r~~G~HFf 144 (503)
T TIGR02279 82 LADAGLVIEAI--------------VENLEVKKALFAQLEELCPAD-TIIASNTSSLSITAIAAG-LAR-PERVAGLHFF 144 (503)
T ss_pred hCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCC-eEEEECCCCCCHHHHHHh-cCc-ccceEEEecc
Confidence 99999999995 577889999999999998766 56789988743 333322 211 12222
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|.-++...-..+.+.+|..|
T Consensus 145 ~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p 180 (503)
T TIGR02279 145 NPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQP 180 (503)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCee
Confidence 43456666666677778888766
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.5e-09 Score=104.50 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=86.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-------CCC-------CCCcEEEcCCcc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-------PFL-------RSPKIESGSDIA 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-------~~~-------~~~~v~~ttd~e 241 (488)
+.+||+|||+|.||.++|..++..|. +|+++|++++.++.....+.+.. ... ...++..++|++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 34699999999999999999999887 89999999887765443322110 000 024667788885
Q ss_pred -ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 242 -MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
++++||+||+++ .++.++++++.+++.+++++. .|+++|.+......+.+.... +.|++|+
T Consensus 80 ~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~-~ii~sntSt~~~~~~~~~~~~-~~r~vg~ 141 (287)
T PRK08293 80 EAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEK-TIFATNSSTLLPSQFAEATGR-PEKFLAL 141 (287)
T ss_pred HHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCC-CEEEECcccCCHHHHHhhcCC-cccEEEE
Confidence 699999999996 466778899999999987655 345678776433233333332 3455543
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-09 Score=114.08 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=102.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC----CC---------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP----FL---------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~----~~---------~~~~v~~ttd~ea 242 (488)
+..||+|||+|.||..+|..++..|+ +|+++|++++.++.....+.+... .. ...++..++++++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 34689999999999999999999998 999999999988764333332110 00 1245777889988
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG----- 317 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG----- 317 (488)
+++||+||+++ .++.++.+.+...+++++++. .|++||.+.+-...+...... |+|++|
T Consensus 84 ~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~-ailasntStl~i~~la~~~~~-p~r~~G~hff~ 147 (507)
T PRK08268 84 LADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPD-CILATNTSSLSITAIAAALKH-PERVAGLHFFN 147 (507)
T ss_pred hCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCC-cccEEEEeecC
Confidence 99999999995 578889999999999998554 456788776322223222222 233333
Q ss_pred -------------ecCChHHHHHHHHHHHHhCCCC
Q psy12825 318 -------------SGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 318 -------------~gt~lds~R~~~~lA~~Lgv~p 339 (488)
-.|.-++...-..+.+.+|..|
T Consensus 148 Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~p 182 (507)
T PRK08268 148 PVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182 (507)
T ss_pred CcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCce
Confidence 2356666666667778888766
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=102.63 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=77.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-------CCC------CCCcEEEcCCcc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-------PFL------RSPKIESGSDIA 241 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-------~~~------~~~~v~~ttd~e 241 (488)
++.+||+|||+|.||..++..++..|. +|+++|++++.++.....+.... .+. ...++..+++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 79 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE 79 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH
Confidence 345799999999999999999999987 89999999988765443332210 000 013466777888
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
++++||+||+++ .++..+.+.+.+.|.+++++.. +++||.+.+
T Consensus 80 ~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~s~ts~~ 122 (292)
T PRK07530 80 DLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEA-ILATNTSSI 122 (292)
T ss_pred HhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence 899999999996 3455677777888888865432 335777663
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=102.86 Aligned_cols=108 Identities=14% Similarity=0.249 Sum_probs=78.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh-------cC---CCC------CCCcEEEcCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH-------GA---PFL------RSPKIESGSD 239 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~-------~~---~~~------~~~~v~~ttd 239 (488)
+.+||+|||+|.||..++..++..|. +|+++|++++.++.....+.+ .. ... ...++..+++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 34689999999999999999999987 899999999887643332221 10 000 0124556677
Q ss_pred ccccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhH
Q psy12825 240 IAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVL 300 (488)
Q Consensus 240 ~eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~ 300 (488)
++++++||+||+++ ..+.++++++.+.+++++++.. |++||...+.
T Consensus 80 ~~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~-il~S~tsg~~ 125 (291)
T PRK06035 80 YESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPET-IIASNTSGIM 125 (291)
T ss_pred HHHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEEcCCCCC
Confidence 78899999999996 3566778888999999876542 3468877643
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=104.28 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=84.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC--------C-CCCCCcEEEcCCcc-ccCCCc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA--------P-FLRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~--------~-~~~~~~v~~ttd~e-al~dAD 247 (488)
|||+|||.|.||...+..|+..|. +|+++|+++++.+.+.....-+. . .....++.+|+|++ +++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 799999999999999999998886 99999999987765322111111 0 11356799999994 799999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE--eCCchhHHHH
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII--SNPVDVLTYI 303 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~--TNPvdi~t~~ 303 (488)
++||++|.|.++.. ..++..+...++.|.+..+...+|+. |-|+....++
T Consensus 79 v~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v 130 (414)
T COG1004 79 VVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEV 130 (414)
T ss_pred EEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHH
Confidence 99999998877521 13456777778888877665334444 5687754443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=99.88 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C---CC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P---FL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~---~~------~~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||..+|..|+..|. +|+++|++++.++.....+.+.. . .. ....+..++++++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE 80 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH
Confidence 34689999999999999999999886 99999999987764333222110 0 00 0124556667888
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
+++||+||+++ .++..+.+.+...+.+++++. .|++||.+.+
T Consensus 81 ~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~-~il~s~tS~i 122 (295)
T PLN02545 81 LRDADFIIEAI--------------VESEDLKKKLFSELDRICKPS-AILASNTSSI 122 (295)
T ss_pred hCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCC-cEEEECCCCC
Confidence 99999999996 456677888888888876544 2455777664
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-09 Score=100.45 Aligned_cols=149 Identities=19% Similarity=0.307 Sum_probs=102.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C--C---C---------CCCcEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P--F---L---------RSPKIE 235 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~--~---~---------~~~~v~ 235 (488)
..+.+.|+|||||.||+++|+..+..|+ .|.|+|.+++.+.....-++... . + + ...++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 3456789999999999999999999999 89999999988765444443321 0 0 0 133455
Q ss_pred EcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHH---H---h
Q psy12825 236 SGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISW---K---L 307 (488)
Q Consensus 236 ~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~---k---~ 307 (488)
.++|. .++.|||+||+++ .+|+++.++++++|++.|+.. .|+.||.+.+ ++.++. + +
T Consensus 86 ~~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~-~il~tNTSSl~lt~ia~~~~~~srf 150 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSS-TILATNTSSLSLTDIASATQRPSRF 150 (298)
T ss_pred HcCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccc-eEEeecccceeHHHHHhhccChhhh
Confidence 56776 5788999999984 699999999999999999876 6789999873 444432 1 1
Q ss_pred cC---CCC-------CcEEeecCChHHHHHHHHHHHHhCCCC
Q psy12825 308 SG---FPK-------NRVIGSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 308 sg---~p~-------~rViG~gt~lds~R~~~~lA~~Lgv~p 339 (488)
.| |+| +-|-+--|+-++..+-..+++.+|..|
T Consensus 151 ~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 151 AGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred ceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 22 111 122233345555555556666666554
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.5e-08 Score=97.27 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=75.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CC------CCCcEEEcCCc-ccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FL------RSPKIESGSDI-AMS 243 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~------~~~~v~~ttd~-eal 243 (488)
+||+|||+|.||..+|..|+..+. +|+++|++++.++.....+..... .. ...++..++++ +++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 589999999999999999999987 899999999888765433222100 00 02246667787 579
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
++||+||+++ .++..+.+.+...+.+++++. .++++|.+.
T Consensus 80 ~~aD~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~-~il~~~tSt 119 (288)
T PRK09260 80 ADADLVIEAV--------------PEKLELKKAVFETADAHAPAE-CYIATNTST 119 (288)
T ss_pred cCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCC-cEEEEcCCC
Confidence 9999999996 345567777778888887554 244566655
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-07 Score=94.26 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=80.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC--------CCCCcEEEcCCcc-ccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF--------LRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~--------~~~~~v~~ttd~e-al~dAD 247 (488)
.+||+|||+|.||.+++..|+..+. +|+++|++++.++.....+.+.... ....++..++|++ ++++||
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD 81 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGAD 81 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCC
Confidence 4689999999999999999998887 8999999998877654433221100 0112355667775 689999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
+||+++ .......+++...+..++++. .+++||.+.+-...+.+... .+.+++|+
T Consensus 82 lVi~av--------------~~~~~~~~~v~~~l~~~~~~~-~ii~s~tsg~~~~~l~~~~~-~~~~~ig~ 136 (311)
T PRK06130 82 LVIEAV--------------PEKLELKRDVFARLDGLCDPD-TIFATNTSGLPITAIAQAVT-RPERFVGT 136 (311)
T ss_pred EEEEec--------------cCcHHHHHHHHHHHHHhCCCC-cEEEECCCCCCHHHHHhhcC-CcccEEEE
Confidence 999996 233445667777777776544 34557766643333333222 13456655
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=97.14 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=80.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh-------cC--CCCCCCcEEEcCCc-cccCCC
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH-------GA--PFLRSPKIESGSDI-AMSEGS 246 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~-------~~--~~~~~~~v~~ttd~-eal~dA 246 (488)
.+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.. .. ......++..++|+ +++++|
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a 81 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA 81 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence 3589999999999999999999998 899999999877653221110 00 00112246667787 579999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYIS 304 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~ 304 (488)
|+||+++ .++.++.+.+...+..++|+. .|+.||.+++....+
T Consensus 82 D~Vieav--------------pe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s~l 124 (495)
T PRK07531 82 DWIQESV--------------PERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPSDL 124 (495)
T ss_pred CEEEEcC--------------cCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHH
Confidence 9999995 466677888888888887765 467888877443333
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=85.39 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=81.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCcc-ccCCCc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~e-al~dAD 247 (488)
|||+|||.|.+|..+|..|+..|+ +|+-+|+|+++.+.+.....+... .....++..++|++ ++++||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 799999999999999999999998 999999999877654322222110 00146888888885 599999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe-CCchhHH----HHHHHhcCCCCCcEEeecCC
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS-NPVDVLT----YISWKLSGFPKNRVIGSGTN 321 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T-NPvdi~t----~~~~k~sg~p~~rViG~gt~ 321 (488)
++|++++.|...+.+ -+...+....+.|.++ .++.++|+=| =|++... .++.+.++.. .-|++.-+
T Consensus 79 v~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~f~la~~ 150 (185)
T PF03721_consen 79 VVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--EDFHLAYS 150 (185)
T ss_dssp EEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TCEEEEE-
T ss_pred eEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cCCeEEEC
Confidence 999999888665321 1233455555555555 3455544444 4766544 4555555432 22445344
Q ss_pred hHHHHHHHHHHHHh
Q psy12825 322 LDSMRFRVLLAQKL 335 (488)
Q Consensus 322 lds~R~~~~lA~~L 335 (488)
.|-.+--+.+.+..
T Consensus 151 PErl~~G~a~~d~~ 164 (185)
T PF03721_consen 151 PERLREGRAIEDFR 164 (185)
T ss_dssp -----TTSHHHHHH
T ss_pred CCccCCCCcchhcc
Confidence 44333334444444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.6e-07 Score=90.48 Aligned_cols=106 Identities=17% Similarity=0.212 Sum_probs=74.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH-------HhhcCCC------CCCCcEEEcCCcc-c
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD-------LQHGAPF------LRSPKIESGSDIA-M 242 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d-------L~~~~~~------~~~~~v~~ttd~e-a 242 (488)
.+||+|||+|.||.+++..|+..|. +|++||++++.++..... +.+.... ....++..++|++ +
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a 79 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA 79 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh
Confidence 3589999999999999999999987 899999998766643221 1111000 0123466777884 7
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
+++||+||++. ..+....+.+...+.+.+++..+| .||....
T Consensus 80 ~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~ 121 (308)
T PRK06129 80 VADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSAL 121 (308)
T ss_pred hCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCC
Confidence 89999999995 344556677777788877766444 5776553
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.4e-06 Score=80.01 Aligned_cols=104 Identities=11% Similarity=0.160 Sum_probs=70.4
Q ss_pred ceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
|||+||| +|.||.+++..|+..+. +|.++|+++++++....+..+.... ....++..+++.++++++|+||+++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp- 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP- 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-
Confidence 5899997 79999999999998885 8999999998887766555432210 01123333444578999999999962
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
...+.++.+.+...-++.++|-++||.+.
T Consensus 78 ---------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 78 ---------------WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ---------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 11233444444443334678889999753
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.4e-07 Score=81.87 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=76.1
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC---CCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL---RSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~---~~~~v~~ttd~-eal~dADiVIitag 254 (488)
||+|+|||..|+++|..|+.++. +|.||+++++.++.+...-.....++ ....+..++|+ +++++||+||++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred CEEEECcCHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence 89999999999999999999996 99999999876654333222111111 23467778898 58999999999952
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEEEeC-----CchhHHHHHHHhcCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLIISN-----PVDVLTYISWKLSGF 310 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv~TN-----Pvdi~t~~~~k~sg~ 310 (488)
....++++++|..+-+ +..+|+++- ..-.+.+++.+..+.
T Consensus 79 ----------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~ 124 (157)
T PF01210_consen 79 ----------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPI 124 (157)
T ss_dssp ----------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSS
T ss_pred ----------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhh
Confidence 2245788888888854 444444431 122667777666544
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.3e-06 Score=82.10 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=56.2
Q ss_pred CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 403 GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 403 g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
++..|+ ..++++|.++.+.++.+||.|+|. .|+|+|.++++||+|+++|++++...+||+..+++++.....
T Consensus 134 ~~~~~a-----~~~i~~i~~~~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~g~lP~~~~~li~~~~~~ 206 (232)
T PF11975_consen 134 GSGEYA-----EAAIEAIYNDKPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAVGPLPPAIAGLIQQVKAY 206 (232)
T ss_dssp TTSCHH-----HHHHHHHHHSSEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-SB---HHHHHHHHHHHHH
T ss_pred cccchH-----HHHHHHHhcCCCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccCCCCCHHHHHHHHHHHHH
Confidence 445554 457777799999999999999998 899999999999999999999988899999999988765443
|
It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-06 Score=91.14 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=82.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-----C---CCCCcEEEcCCc-cccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-----F---LRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-----~---~~~~~v~~ttd~-eal~dAD 247 (488)
+|||+|||+|.||..+|..|+..|...+|+.+|+++++++.+..+...... + ....++..++|+ +++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 479999999999999999999987545899999999887764333221110 0 012347788887 4799999
Q ss_pred EEEEecccccCCCc-chHhhHhhhHHHHHHHHHHHhccCCCcEEEEE--eCCchhH
Q psy12825 248 IVIITAGVRSLVGE-TRLQLVDRNVKIFKDLIPKIAKGSPDCILLII--SNPVDVL 300 (488)
Q Consensus 248 iVIitag~~~k~G~-~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~--TNPvdi~ 300 (488)
++|++++.|..... .. + -.-++..+.+.++.|.++.+++.+|+. |-|....
T Consensus 81 vi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt 134 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA 134 (473)
T ss_pred EEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH
Confidence 99999998864321 00 0 012345677777777777554444443 5677643
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-05 Score=81.30 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=83.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC---CCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL---RSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~---~~~~v~~ttd~-eal~dADiVIit 252 (488)
++||+|||+|+-|+++|..|+.++. +|+|+.++++..+.+..+-.....++ ....+..++|. +++++||+||+.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~--~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGH--EVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCC--eeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence 4799999999999999999999995 99999999886654333211111121 35667788898 578899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe-----CCchhHHHHHHHhcC
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS-----NPVDVLTYISWKLSG 309 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T-----NPvdi~t~~~~k~sg 309 (488)
.. ...++++++++..+ .++..++.+| ++...+++++.+..+
T Consensus 79 vP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~ 125 (329)
T COG0240 79 VP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP 125 (329)
T ss_pred CC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC
Confidence 52 23667777777644 5677788887 234478888877654
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.3e-06 Score=68.65 Aligned_cols=94 Identities=15% Similarity=0.302 Sum_probs=65.8
Q ss_pred eEEEEecccchHHHHHHHHHcCC-CCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGI-YSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l-~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
||+|||+|.||.+++..|+..++ ..+|.++ ++++++++....++. ..+...+..+++++||+||+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~--------~~~~~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG--------VQATADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT--------TEEESEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc--------cccccCChHHhhccCCEEEEEEC--
Confidence 79999999999999999999883 3488866 999988876544432 12222223467889999999972
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
| ..+.++++.+....++.++|-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 1 1345666666445677878877775
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.7e-05 Score=80.49 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=73.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~~~~~v~~ttd~-eal~dADiV 249 (488)
|||+|||+|.||..+|..++. |+ +|+.||+++++++........... .....++..++++ ++.++||+|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~--~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NH--EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CC--cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 589999999999999987774 65 899999999988765432222110 0012356566665 568999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCchhHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVDVLTYI 303 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvdi~t~~ 303 (488)
|+++..+...... .-++..+.+.++.|.+..|+.++|+- |-|.+..-++
T Consensus 78 ii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 78 IIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred EEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence 9998665321111 12334445555555554556655555 4566644443
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=5e-05 Score=78.05 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=86.7
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhH-------HHHHHHHHhh----cCC---CC------CCCcEEEcCC--c-cccC
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDR-------CKGEMLDLQH----GAP---FL------RSPKIESGSD--I-AMSE 244 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~-------l~g~~~dL~~----~~~---~~------~~~~v~~ttd--~-eal~ 244 (488)
||.++|..++..|+ +|+|+|++++. ++.....+.+ ... .. ...++..+++ + ++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 68899999999998 99999998853 2222222211 100 00 1346766654 3 6799
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE--------
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI-------- 316 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi-------- 316 (488)
+||+||+++ .++.++.+++..++.+.++.. .|+.||.+.+....+.+.... |+|++
T Consensus 79 ~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~-~ilaSntS~~~~~~la~~~~~-p~r~~g~Hf~~Pp 142 (314)
T PRK08269 79 DADLVFEAV--------------PEVLDAKREALRWLGRHVDAD-AIIASTTSTFLVTDLQRHVAH-PERFLNAHWLNPA 142 (314)
T ss_pred cCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCC-cEEEEccccCCHHHHHhhcCC-cccEEEEecCCcc
Confidence 999999996 588899999999999997654 334999887544333333322 22333
Q ss_pred ----------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 ----------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 ----------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-+|.-++...-..+.+.+|..|
T Consensus 143 ~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~ 175 (314)
T PRK08269 143 YLMPLVEVSPSDATDPAVVDRLAALLERIGKVP 175 (314)
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 45666666555566667777655
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.8e-05 Score=76.62 Aligned_cols=114 Identities=12% Similarity=0.182 Sum_probs=77.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC----CCCcEEEcCCc-cccCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL----RSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~----~~~~v~~ttd~-eal~dADiV 249 (488)
..++||+|||+|.+|..++..|+..+ +++++..+++..+.+..+-....... ...++..++|+ ++++++|+|
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlV 81 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVV 81 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEE
Confidence 35689999999999999999999887 47888888876654432211111011 12346667777 578999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch-----hHHHHHHHh
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD-----VLTYISWKL 307 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd-----i~t~~~~k~ 307 (488)
|+++. ...++++++.+..+ .++..+|.++|-.+ .+.+++.+.
T Consensus 82 ilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~ 129 (341)
T PRK12439 82 VMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV 129 (341)
T ss_pred EEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence 99962 23556666777665 46677888888765 356666654
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.8e-05 Score=76.70 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=67.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
|||+|||+|.+|..++..|+..|. +|.++|++++.++....+-...........+..+++.++++++|+||++....
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~- 77 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAY- 77 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecccc-
Confidence 589999999999999999998876 89999997776654322110000000001112234555568999999996211
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHH
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTY 302 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~ 302 (488)
-..++.+.+..+ .++..||...|.++....
T Consensus 78 ---------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 78 ---------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred ---------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 124444455544 466788888998875443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=71.51 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=48.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||++||.|.||+.++..|+..++ +|+.||+++++++.. .+. ......++ +.+++||+||.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~--~v~~~d~~~~~~~~~----~~~-------g~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGY--EVTVYDRSPEKAEAL----AEA-------GAEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTT--EEEEEESSHHHHHHH----HHT-------TEEEESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCC--eEEeeccchhhhhhh----HHh-------hhhhhhhhhhHhhcccceEeec
Confidence 5799999999999999999999998 899999998776643 221 13445566 5688999999985
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.6e-05 Score=76.06 Aligned_cols=104 Identities=13% Similarity=0.273 Sum_probs=69.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---CCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---FLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
++||+|||+|.||..++..|+..+. +|.++|++++.++....+..+... ......+..++++ +.+++||+||++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 4699999999999999999998887 899999998776654433111100 0011134455666 467899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
... ..+.++.+.+..+ .|+.++|..+|.++
T Consensus 79 v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 79 VPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 621 1334555555555 46777888887654
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.3e-05 Score=76.77 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=69.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---CCCCCCcEEEcCCcc-cc-CCCcEEEEe
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---PFLRSPKIESGSDIA-MS-EGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~~~~~~~v~~ttd~e-al-~dADiVIit 252 (488)
|||+|||||.+|..++..|+..+. +|.|++++++.++.+..+-.+.. .......+..++|++ ++ .++|+||++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 589999999999999999998886 89999998876654433211111 011123455666764 55 589999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhc-c-CCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-G-SPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~-~p~a~vIv~TNPvd 298 (488)
+. ...+.++++.+.. + .++..++..+|=.+
T Consensus 79 vk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 79 VP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred eC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 62 2234555666655 4 56777788888663
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=75.85 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=74.0
Q ss_pred eEEEEecccchHHHHHHHHHcC------CCCeEEEEeCC-----hhHHHHHHHHHhhcCCCC---CCCcEEEcCCc-ccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQG------IYSNFCLIDSN-----EDRCKGEMLDLQHGAPFL---RSPKIESGSDI-AMS 243 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~------l~~el~L~Di~-----~e~l~g~~~dL~~~~~~~---~~~~v~~ttd~-eal 243 (488)
||+|||+|+.|+++|..|+.++ +..+|.||.++ ++..+.+..+..+...++ ....+..++|+ +++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 7999999999999999999876 33599999983 332222211111111111 23467788887 578
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe---CC----chhHHHHHHHhcC
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS---NP----VDVLTYISWKLSG 309 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T---NP----vdi~t~~~~k~sg 309 (488)
++||+||+++. ...++++++.|..+ .++..+|.++ .+ .-.+++++.+..+
T Consensus 81 ~~ADiIIlAVP----------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~ 138 (342)
T TIGR03376 81 KGADILVFVIP----------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG 138 (342)
T ss_pred hcCCEEEEECC----------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC
Confidence 99999999951 23566777777765 3455566665 22 2366777766553
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=69.84 Aligned_cols=95 Identities=18% Similarity=0.321 Sum_probs=66.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+|+|+|+|+|.+|.+++..++..+. ||.+-..+ ++.++..+..+. ..++.....++.+.||+||.++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~--------~~i~~~~~~dA~~~aDVVvLAVP- 69 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALG--------PLITGGSNEDAAALADVVVLAVP- 69 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhc--------cccccCChHHHHhcCCEEEEecc-
Confidence 5799999999999999999999997 88888664 444544443332 23555556689999999999963
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+.. +.++.+++...-.+-++|-.|||.
T Consensus 70 -----------~~a----~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 70 -----------FEA----IPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred -----------HHH----HHhHHHHHHHHhCCeEEEecCCCc
Confidence 222 334444444433366788899995
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=9e-05 Score=76.23 Aligned_cols=100 Identities=10% Similarity=0.149 Sum_probs=66.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---CCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---PFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
+|||+|||+|.||..++..|+..+. +|++||++++.++.....-.+.. ......++..++++ ++++++|+||++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 5799999999999999999998887 89999998877665433211111 01112235556676 568999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
.... .++++.+. ..|..++|.++|..
T Consensus 82 v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi 107 (328)
T PRK14618 82 VPSK----------------ALRETLAG---LPRALGYVSCAKGL 107 (328)
T ss_pred CchH----------------HHHHHHHh---cCcCCEEEEEeecc
Confidence 6211 12333333 34566778888864
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=84.45 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=37.3
Q ss_pred CcEEEEec-chhHHHHHHHHHhh-------hhHHHHHHHH---HHHHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQ-------TMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k-------~la~eivlid---~~~~~e~~~~ 172 (488)
-||+|||+ |+||+++||+|+++ ++++|++++| +++.++.+|.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL 153 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMEL 153 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHH
Confidence 59999999 99999999999999 8888999999 6677776664
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=75.29 Aligned_cols=105 Identities=18% Similarity=0.192 Sum_probs=66.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC------CCCCcEEEcCCccccCCCcEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF------LRSPKIESGSDIAMSEGSRIVI 250 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~------~~~~~v~~ttd~eal~dADiVI 250 (488)
++||+|||+|.||..++..|+..|. +|.++|+++. .+.....-...... ....++..++++++++++|+||
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~--~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 78 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGA--DVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVL 78 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCC--cEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEE
Confidence 3689999999999999999999986 8999998642 22211100000000 0012344556677889999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhH
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVL 300 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~ 300 (488)
++...+ ...++++.+..+ .++.+++..+|..+..
T Consensus 79 l~vk~~----------------~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 79 VTVKSA----------------ATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEecCc----------------chHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 997321 112344555554 4667777788877643
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=78.16 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=70.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCcc-ccCCCc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~e-al~dAD 247 (488)
|||+|||+|.||..+|..|+..|. +|+.+|+++++++.+......... .....++..+++++ ++++||
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~--~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGH--EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCC--eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 589999999999999999999887 899999999877654321111000 00013466677774 699999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
+||+++..+..... .-+...+.+..+.+.++ .+..++++.|
T Consensus 79 vvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 79 VIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred EEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 99999876653211 12334455555555554 4555555544
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.84 E-value=1e-05 Score=82.80 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=36.8
Q ss_pred cEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 132 KITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 132 ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
||+|||+|+||+++||+++.+++++|++++| +++.++.+|.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL 44 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDF 44 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHH
Confidence 8999999999999999999999999999999 4466776665
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=76.69 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCccccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIAMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~eal~d 245 (488)
|+.+||+|||.|.||..+|..|+..|. +|+.+|+++++++.+.....+... ......+..+++ +++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~---~~~ 75 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTT---PEP 75 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecc---ccc
Confidence 346899999999999999999999987 899999999887753211111000 001123444443 458
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe-CCchh
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS-NPVDV 299 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T-NPvdi 299 (488)
||+||++...|.+... ..++..+.+.++.|.++. +..+||+-| .|...
T Consensus 76 aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 76 ADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred CCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 9999999877653221 122344555556666653 455555554 46553
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=75.88 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=78.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcC-----CCCeEEEEeCChhH-HHHHHHHHhhcC----C---CCCCCcEEEcCCc-c
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQG-----IYSNFCLIDSNEDR-CKGEMLDLQHGA----P---FLRSPKIESGSDI-A 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~-----l~~el~L~Di~~e~-l~g~~~dL~~~~----~---~~~~~~v~~ttd~-e 241 (488)
+.+||+|||+|+.|+++|..|+.++ +..+|.||.++++. -+..+.++++.. . +....++..++|. +
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4579999999999999999999876 23589999888752 112344454321 1 1234577888887 5
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc--c-CCCcEEEEEeC---Cc----hhHHHHHHHhcC
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK--G-SPDCILLIISN---PV----DVLTYISWKLSG 309 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~--~-~p~a~vIv~TN---Pv----di~t~~~~k~sg 309 (488)
++++||+||+++. ...++++++.+.. + .++.++|.++- +. ..+++++.+..+
T Consensus 90 av~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~ 151 (365)
T PTZ00345 90 AVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG 151 (365)
T ss_pred HHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC
Confidence 7999999999862 2356777777776 4 33445555542 11 246667666543
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00028 Score=75.46 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=71.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-----CCCCCcEEEcCCccccCCCcEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-----FLRSPKIESGSDIAMSEGSRIVI 250 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-----~~~~~~v~~ttd~eal~dADiVI 250 (488)
+++||+|||.|.||..+|..|+. ++ +|+.||+++++.+.+......... +....++..+++.+++++||++|
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~--~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvi 81 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SR--QVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYI 81 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CC--EEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEE
Confidence 46899999999999999999776 44 999999999877654311111000 00112456677788899999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEE-eCCch
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLII-SNPVD 298 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~-TNPvd 298 (488)
++++.|.+.... .++..+....+.|.++ .+..++|+- |-|..
T Consensus 82 i~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 82 ITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred EEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 999877543111 1222333334445444 344555544 34544
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.5e-05 Score=81.85 Aligned_cols=44 Identities=45% Similarity=0.695 Sum_probs=38.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 129 PDQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
++.||+|||+|.||.++||+++.+++++|++++| +++.++.+|.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl 48 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDL 48 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHH
Confidence 4569999999999999999999999999999999 5566766664
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00035 Score=72.88 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=87.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCccccCCCcE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDIAMSEGSRI 248 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~eal~dADi 248 (488)
.+|+|||.|.||..+|..++.+|+ .++=+|+|+.+.+.+...-.+... .-...++.+|+|++.++.||+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 799999999999999999999998 899999999877654322222211 013567889999999999999
Q ss_pred EEEecccccCC-CcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEE-eCCch----hHHHHHHHhcCCCCCcEEee
Q psy12825 249 VIITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLII-SNPVD----VLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 249 VIitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~-TNPvd----i~t~~~~k~sg~p~~rViG~ 318 (488)
+|+++..|.+. .+.. +..+..-++.|.++ .+..+||+= |-|.. ++-.++.+.+|+.-..-|++
T Consensus 88 ~iI~VPTPl~~~~~pD-------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 88 FIICVPTPLKKYREPD-------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred EEEEecCCcCCCCCCC-------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99998777543 2222 33455556666665 344544443 45554 33444444466543333444
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.8e-05 Score=82.46 Aligned_cols=42 Identities=38% Similarity=0.542 Sum_probs=37.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
.||+|||+|+||+++||+++.+++++|++++| +++.++.+|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL 82 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDL 82 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHH
Confidence 59999999999999999999999999999999 5666776665
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=72.68 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=70.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCC--CcEEEcCCccc-cCCCcEEEEecc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS--PKIESGSDIAM-SEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~--~~v~~ttd~ea-l~dADiVIitag 254 (488)
|||+|||+|.+|..++..|+..+. +|.++++ +++++.....--........ ......+|+++ .+++|+||++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR--DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC--ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 589999999999999999998876 8999998 66555432110000000000 01112345544 589999999963
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVI 316 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi 316 (488)
.+ .+.++.+.+..+ .++.++|.+.|.++....+ .++ +|.++++
T Consensus 78 ~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l-~~~--~~~~~v~ 121 (305)
T PRK12921 78 AY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL-EPY--FGRERVL 121 (305)
T ss_pred cc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH-HHh--CCcccEE
Confidence 11 124444555554 4567778888987644333 222 4555655
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00046 Score=69.48 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=48.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|||+|.||..++..|...+. +|.++|++++.++... +.. . . . ..+++.+++++||+||++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~-~~g--~----~-~-~~~~~~~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCERAI-ERG--L----V-D-EASTDLSLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH-HCC--C----c-c-cccCCHhHhcCCCEEEEcC
Confidence 589999999999999999998886 8999999987665421 111 0 0 0 1234556789999999996
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00056 Score=68.58 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=65.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
+||+|||+|.||..++..|...+. ..+|.++|+++++++...... ..+..+.+. +.+.++|+||++..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~---------~g~~~~~~~~~~~~~aDiVilav~ 71 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY---------PGIHVAKTIEEVISQSDLIFICVK 71 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc---------CCeEEECCHHHHHHhCCEEEEecC
Confidence 479999999999999999988874 247999999987665432111 123334455 45889999999961
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
+ ..+.++.+.+..+ .++.++|.++|.+.
T Consensus 72 ----p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ----P------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 1234455555544 45678888888764
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.4e-05 Score=78.46 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=37.0
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
.||+|||+|+||.++||.++.+++++|++++| +++.++.+|.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl 51 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDL 51 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHH
Confidence 59999999999999999999999999999999 5555666654
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0012 Score=67.28 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+..+||+|||+|.||..++..|...+...+|.++|++++.++.. .+.. . ....+.++ +.+++||+||+++
T Consensus 4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-~~~g------~--~~~~~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-RELG------L--GDRVTTSAAEAVKGADLVILCV 74 (307)
T ss_pred cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-HhCC------C--CceecCCHHHHhcCCCEEEECC
Confidence 34579999999999999999998888655899999998766532 1110 0 11122344 5688999999996
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.3e-05 Score=76.04 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=36.3
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHHHH---HHhhhCCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTVDR---LLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid~~---~~~e~~~~ 172 (488)
.||+|||+|+||.++||+++.+.+++|++++|.. ..++.+|.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL 45 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDL 45 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcch
Confidence 4999999999999999999999999999999943 55666664
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00054 Score=68.15 Aligned_cols=95 Identities=14% Similarity=0.317 Sum_probs=63.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
++||+|||+|.||..++..|...+. ..++.++|+++++++.....+ .+..+.+. +.+.+||+||++..
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g~~~~~~~~~~~~~advVil~v~ 71 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------GVRAATDNQEAAQEADVVVLAVK 71 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------CCeecCChHHHHhcCCEEEEEcC
Confidence 4789999999999999999988773 247999999987665432221 11223454 45789999999961
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
...++++.+.+..+. +..||.++|-..
T Consensus 72 ----------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ----------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ----------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 123455555555443 456777777553
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=70.73 Aligned_cols=79 Identities=13% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..+||+|||+|.+|.+++..|...|. +|.++|+++. .++ +++++||+||++..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~--~V~~~~r~~~------------------------~~~~~~~~~advvi~~vp 56 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGH--RVRVWSRRSG------------------------LSLAAVLADADVIVSAVS 56 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC--EEEEEeCCCC------------------------CCHHHHHhcCCEEEEECC
Confidence 45799999999999999999999987 8999998752 133 45789999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhc--cCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAK--GSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~--~~p~a~vIv~TNP 296 (488)
...++++++.+.. ..++.+++..|+.
T Consensus 57 ----------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 57 ----------------MKGVRPVAEQVQALNLPPETIIVTATKG 84 (308)
T ss_pred ----------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence 1245666666764 3567777777763
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.48 E-value=1.9e-05 Score=71.71 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=36.3
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
+||+|||+ |.||.++||.++.+++++|++++| +++.++.+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D 45 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD 45 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh
Confidence 59999999 999999999999999999999998 456666655
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00013 Score=74.93 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=35.4
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHHHHHHHHHH-HHhhhCCC
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMARDAVSTVDR-LLSQVAPS 172 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~~-~~~e~~~~ 172 (488)
||+|||+ |+||+++||+++.+++++|++++|.. ..++.+|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL 43 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADL 43 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchh
Confidence 8999999 99999999999999999999999932 45556554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00067 Score=69.39 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCC---CcEEEcCCccccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS---PKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~---~~v~~ttd~eal~dADiVIi 251 (488)
+..+||+|||+|.+|..++..|...+. +|.+++++.. +.....-......... ..+..+++.+++..+|+||+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGF--DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 456799999999999999999988886 8999998652 2211100000000010 11223344556788999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+.-... ..+..+.+... .|+..++...|=.+..-.+ .++ +|+++|++
T Consensus 79 avK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l-~~~--~~~~~v~~ 126 (313)
T PRK06249 79 GLKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQL-REI--LPAEHLLG 126 (313)
T ss_pred EecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHHH-HHH--CCCCcEEE
Confidence 962111 12333444443 4778888888877643333 222 56666653
|
|
| >KOG1683|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=72.52 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=78.8
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C---------CCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P---------FLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~---------~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
||.++|..++..++ +++|+|.|...+++-...+.... . ......++.+.||..++++|+||.++
T Consensus 1 MG~gia~~~~~~~i--~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav- 77 (380)
T KOG1683|consen 1 MGAGIAIVFILAGI--RTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAV- 77 (380)
T ss_pred CcchHHHHHHHcCC--cEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccch-
Confidence 67789999999999 89999999776553333333211 0 01134455677899999999998885
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
.+|++.++++...|+++||+. .|..||...+--..+...+.. +++++|+
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~-~i~gsntSs~~~~~isa~ld~-~e~vvg~ 126 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPK-CIRGSNTSSLDINVISAGLDR-PEMVVGM 126 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCc-ceeeeccccCChHHHhhccCc-hhhhccc
Confidence 589999999999999999765 567888765332233222333 4677766
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.45 E-value=8.8e-05 Score=76.10 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=35.4
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHHHHHHHHH-HHHhhhCCC
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMARDAVSTVD-RLLSQVAPS 172 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~-~~~~e~~~~ 172 (488)
||+|||+ |+||+++||++..+++++|++++|. ++.++.+|.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL 44 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADL 44 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHh
Confidence 8999999 9999999999999999999999996 444555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00075 Score=73.08 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=67.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc----ccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA----MSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e----al~dADiVIita 253 (488)
.+|+|||.|.||..+|..|+.+|+ +|.+||+++++.+.......+. ...+..+.+++ .++++|+||+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~--~V~v~dr~~~~~~~l~~~~~~~-----g~~i~~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF--KISVYNRTYEKTEEFVKKAKEG-----NTRVKGYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhhhhc-----CCcceecCCHHHHHhcCCCCCEEEEEe
Confidence 589999999999999999999998 8999999998776544322211 11234455653 344699888885
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
. +.+.+.++.+.+..+ .|+.++|..+|-
T Consensus 75 ~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 75 K---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred C---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 1 123445555555554 578888888874
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0012 Score=66.30 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=47.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|||+|.||..++..|...++..+|+.+|++++.++.. .+.. . +....+++++.+||+||++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~-~~~g-------~--~~~~~~~~~~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKA-LELG-------L--VDEIVSFEELKKCDVIFLAI 66 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH-HHCC-------C--CcccCCHHHHhcCCEEEEeC
Confidence 48999999999999999999888655799999998766532 1111 0 11123454455799999996
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=64.20 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=48.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC--CCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI--YSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
|+.+||+|||+|.+|..++..++..+. ..++++++. ++++++.....+ .+..+.|+ +.++++|+||
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~DiVi 71 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY----------NVSTTTDWKQHVTSVDTIV 71 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc----------CcEEeCChHHHHhcCCEEE
Confidence 456799999999999999999987753 334778876 456555432221 12234565 4688999999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 72 iav 74 (245)
T PRK07634 72 LAM 74 (245)
T ss_pred Eec
Confidence 996
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=66.05 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=62.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
|+.+||+|||+|.||.+++..|+..+. ..+|.++|++. ++++.....+ .+..+.+. +.+++||+||
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~----------g~~~~~~~~e~~~~aDvVi 70 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY----------GVKGTHNKKELLTDANILF 70 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc----------CceEeCCHHHHHhcCCEEE
Confidence 355799999999999999999998872 35899999865 3444322211 12233454 4578999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
++.. | ..+.++...+..+ .++.++|.+.+-+.
T Consensus 71 lav~----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 71 LAMK----P------------KDVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred EEeC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 9962 1 1223333445443 45666666655543
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=66.64 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=49.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||++||+|.||.+++..|...+. ..+|..+|+++++++....++ .+..+.+. +.+++||+||++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~----------g~~~~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY----------GITITTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc----------CcEEeCCcHHHHhhCCEEEEEe
Confidence 589999999999999999998874 457999999887665422211 02233454 4578999999997
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0014 Score=65.11 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=61.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||++||+|.||..++..|+..+. ..+|+.+ |+++++++.. .+. .+..+.+. +.+++||+||++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~----~~~-------g~~~~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF----QSL-------GVKTAASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH----HHc-------CCEEeCChHHHHhcCCEEEEEE
Confidence 689999999999999999998875 4578888 8888765432 211 12233454 5678999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCc
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPV 297 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPv 297 (488)
. + ..+.++...+..+ .|+.++|..++..
T Consensus 70 ~----~------------~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 70 K----P------------QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred C----c------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 1 1 2344454555544 4566556554544
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0014 Score=66.12 Aligned_cols=62 Identities=10% Similarity=0.231 Sum_probs=47.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
||+|||+|.||..++..|+..++ +|.+||+++++++.. .+.- . ....+. +++++||+||++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~~~----~~~g------~-~~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY--QLHVTTIGPEVADEL----LAAG------A-VTAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHH----HHCC------C-cccCCHHHHHhcCCEEEEec
Confidence 69999999999999999998887 899999998766542 2210 1 112344 6789999999996
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00069 Score=60.97 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=58.3
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
...+..+|.|||||.+|..+++.|...+. .+|.+++++.++++..+..+... ...+....+. +.+.++|+||.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~-----~~~~~~~~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGV-----NIEAIPLEDLEEALQEADIVIN 81 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGC-----SEEEEEGGGHCHHHHTESEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCcc-----ccceeeHHHHHHHHhhCCeEEE
Confidence 45677899999999999999999999875 47999999999888777666211 1223333444 46889999999
Q ss_pred ecccc
Q psy12825 252 TAGVR 256 (488)
Q Consensus 252 tag~~ 256 (488)
+.+.+
T Consensus 82 aT~~~ 86 (135)
T PF01488_consen 82 ATPSG 86 (135)
T ss_dssp -SSTT
T ss_pred ecCCC
Confidence 97544
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00095 Score=67.95 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=62.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIita 253 (488)
|||+|||+|.||..++..|+..+. +|.+||+++++++..... .. . ...++ +.++++|+||++.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~--~V~~~dr~~~~~~~l~~~---g~------~--~~~s~~~~~~~~~~~dvIi~~v 67 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGH--DCVGYDHDQDAVKAMKED---RT------T--GVANLRELSQRLSAPRVVWVMV 67 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---CC------c--ccCCHHHHHhhcCCCCEEEEEc
Confidence 489999999999999999999886 899999999877654321 10 0 11222 3567899999995
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
. + ..++++++.+... .++.++|..+|.
T Consensus 68 p----~------------~~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 68 P----H------------GIVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred C----c------------hHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 1 1 1344455555554 466778888775
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0066 Score=62.90 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHh-hhC--C---CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 153 TMARDAVSTVDRLLS-QVA--P---SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 153 ~la~eivlid~~~~~-e~~--~---~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
.+.+.+...++.... .+. . ......++|+|||.|.+|..+|..|...|. +|+.||++++.... .
T Consensus 116 ~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~~----~---- 185 (330)
T PRK12480 116 QLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGA--TITAYDAYPNKDLD----F---- 185 (330)
T ss_pred HHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCChhHhhh----h----
Confidence 466777666543221 110 0 034567899999999999999998876665 89999998643211 0
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHH
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISW 305 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~ 305 (488)
+..+.++ +.+++||+|+++.. ... .+..++- .+.+....|++++|+++-=.-+-...+.
T Consensus 186 -------~~~~~~l~ell~~aDiVil~lP-----~t~------~t~~li~--~~~l~~mk~gavlIN~aRG~~vd~~aL~ 245 (330)
T PRK12480 186 -------LTYKDSVKEAIKDADIISLHVP-----ANK------ESYHLFD--KAMFDHVKKGAILVNAARGAVINTPDLI 245 (330)
T ss_pred -------hhccCCHHHHHhcCCEEEEeCC-----CcH------HHHHHHh--HHHHhcCCCCcEEEEcCCccccCHHHHH
Confidence 1123355 57899999999862 111 1112221 2333334578888888743222233333
Q ss_pred HhcCCCCCcEEeecCChHH
Q psy12825 306 KLSGFPKNRVIGSGTNLDS 324 (488)
Q Consensus 306 k~sg~p~~rViG~gt~lds 324 (488)
+. +...++.|.+ +|.
T Consensus 246 ~a--L~~g~i~gaa--lDV 260 (330)
T PRK12480 246 AA--VNDGTLLGAA--IDT 260 (330)
T ss_pred HH--HHcCCeeEEE--Eec
Confidence 32 2334665553 454
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=66.74 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=57.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.+||+|+|||.+|.++++.|+..+. .+|.++|++.++++..+.++.+... ...+....+. +.+.++|+||.+.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~---~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP---AARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC---CeEEEeccchHhhhCCCCEEEECC
Confidence 345799999999999999999998875 5799999999999988888865421 1233323333 4688999999984
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0019 Score=66.24 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=72.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH---HhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD---LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d---L~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
|||+|+|+|.||+.+++.|...+ ..+.++-+++. ++....+ +.+... ........+++.+.+..+|+||++.-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccChhhcCCCCEEEEEec
Confidence 69999999999999999999998 36666666542 4332221 111100 00122233445577889999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhcCCCCCcEE-ee
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLSGFPKNRVI-GS 318 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi-G~ 318 (488)
.. -..+..+.+..+. |+.+|+.+=|=.+..- .+.+. ++.++|+ |+
T Consensus 77 a~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~--~~~~~il~G~ 123 (307)
T COG1893 77 AY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI--LPKETVLGGV 123 (307)
T ss_pred cc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh--CCcceEEEEE
Confidence 21 2345566666664 5667777778877655 44443 4444444 45
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0027 Score=64.14 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=48.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||+|.||..++..|+..+. +|.+||+++++.+.. ... .+..+.++ +.+++||+||++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~~~----~~~-------g~~~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVYDRNPEAVAEV----IAA-------GAETASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHH----HHC-------CCeecCCHHHHHhcCCEEEEeC
Confidence 589999999999999999998886 899999998766532 111 11233455 4678999999996
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=66.13 Aligned_cols=63 Identities=21% Similarity=0.345 Sum_probs=48.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||.|.||..++..|+..+. +|.+||+++++++... ... +..+.++ +.+++||+||++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~--~V~v~d~~~~~~~~~~----~~g-------~~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH--QLQVFDVNPQAVDALV----DKG-------ATPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHH----HcC-------CcccCCHHHHHhcCCEEEEec
Confidence 589999999999999999999886 8999999988765432 110 1123454 5689999999996
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=62.78 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=62.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC---hhHHHHH---------------HHHHhhcCCCCCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN---EDRCKGE---------------MLDLQHGAPFLRSPKIES 236 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~---~e~l~g~---------------~~dL~~~~~~~~~~~v~~ 236 (488)
.+..||+|+|+|.+|+.++..|+..|+ .+|+|+|.+ +..+..+ ...+.+. .+..++..
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~i---np~~~i~~ 94 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEI---NPYTEIEA 94 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHH---CCCCEEEE
Confidence 345799999999999999999999987 479999987 4333321 1111111 11233332
Q ss_pred cC------Cc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEE
Q psy12825 237 GS------DI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292 (488)
Q Consensus 237 tt------d~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv 292 (488)
.. +. +.++++|+||.+. .|.+....+...+.+..+..+++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a~---------------Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEAF---------------DNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEECC---------------CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 11 11 2478999999984 455566666666666655444443
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0054 Score=62.67 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=72.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH--HhhcCCCCCCCcEEE-cCCccccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD--LQHGAPFLRSPKIES-GSDIAMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d--L~~~~~~~~~~~v~~-ttd~eal~dADiVIita 253 (488)
.|||+|+|+|.||..++..|...|. +|.|+++..+.++.+..+ +. .........+.. ..+.+.....|+||++.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLT-LVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeE-EeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 4799999999999999999988876 899999976656543221 11 100000001111 11223456899999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
-. .. ..+..+.+..+ .++..++.+-|=++....+. ++ |+.++|++-
T Consensus 79 K~---------------~~-~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~-~~--~~~~~v~~g 125 (305)
T PRK05708 79 KA---------------YD-AEPAVASLAHRLAPGAELLLLQNGLGSQDAVA-AR--VPHARCIFA 125 (305)
T ss_pred CH---------------Hh-HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHH-Hh--CCCCcEEEE
Confidence 21 11 22344455554 57888888889887554443 22 455666643
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.002 Score=57.76 Aligned_cols=101 Identities=19% Similarity=0.233 Sum_probs=57.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
...+||+|||+|.+|++++..|...+. +|.-+ .++.+..+ .+.+.. ..... .++ +.+.+||++|++
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~--~v~~v~srs~~sa~----~a~~~~-----~~~~~-~~~~~~~~~aDlv~ia 75 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH--EVVGVYSRSPASAE----RAAAFI-----GAGAI-LDLEEILRDADLVFIA 75 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS--EEEEESSCHH-HHH----HHHC-------TT------TTGGGCC-SEEEE-
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCccccc----cccccc-----ccccc-cccccccccCCEEEEE
Confidence 356899999999999999999998886 55544 44443333 333321 11112 234 568999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc---CCCcEEEEEe--CCchhHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG---SPDCILLIIS--NPVDVLTYI 303 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~---~p~a~vIv~T--NPvdi~t~~ 303 (488)
+. + ..+.+++++|..+ -|+-+++..| -+++++.-+
T Consensus 76 vp-----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 76 VP-----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp S------C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ec-----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 62 1 1567888888887 3666666665 356666554
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0062 Score=65.49 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=48.0
Q ss_pred ceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+||| .|.||..++..|...+. +|.++|++++.+...+.++ .+..+++. +.+.+||+||+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~----------gv~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL----------GVEYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc----------CCeeccCHHHHhccCCEEEEec
Confidence 5899998 59999999999988886 8999999876553332221 11234555 5789999999996
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0028 Score=63.70 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=66.4
Q ss_pred CceEEEEecccchHHHHHHHHHcC-C-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQG-I-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~-l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||++||+|+||..++..|...+ + ..+|...|++++++.....++ .. .+ ++|. +....+|+||+++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~------g~--~~--~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY------GV--VT--TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc------CC--cc--cCcHHHHHhhCCEEEEEe
Confidence 479999999999999999999988 3 468999999988775332222 11 11 4454 6788999999997
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
|| ..+.++.+.++...++.++|-+.=
T Consensus 71 ----KP------------q~~~~vl~~l~~~~~~~lvISiaA 96 (266)
T COG0345 71 ----KP------------QDLEEVLSKLKPLTKDKLVISIAA 96 (266)
T ss_pred ----Ch------------HhHHHHHHHhhcccCCCEEEEEeC
Confidence 44 356777777777555655554443
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00053 Score=70.78 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=35.0
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHHHHHHHHHH-HHhhhCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMARDAVSTVDR-LLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~~-~~~e~~~ 171 (488)
.||+|||+ |+||.++||++.++++++|++++|.. +.++.+|
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~D 61 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAAD 61 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEch
Confidence 59999999 99999999999999999999999943 3344444
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00021 Score=73.03 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=33.5
Q ss_pred EEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 135 VVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 135 vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
|||+|+||.++||.++++++++|++++| +++.++.+|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl 41 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDL 41 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 6899999999999999999999999999 5566666664
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0061 Score=63.73 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=46.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||+|.||.+++..|...++ ++.++|.+++..... .... . .... ..++++ +++++||+||+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~-~a~~--~--~~~~--~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP--DVFIIGYDPSAAQLA-RALG--F--GVID--ELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHH-HHhc--C--CCCc--ccccCHHHHhcCCCEEEEeC
Confidence 479999999999999999998887 788898877644321 1111 0 0011 123454 4689999999996
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0029 Score=57.26 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=54.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|+|+|+|.+|..++..|...+ ..++.++|++.++++....++.... ..... .+. +.++++|+||++.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG-----IAIAY-LDLEELLAEADLIINTT 89 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc-----cceee-cchhhccccCCEEEeCc
Confidence 55689999999999999999998876 4589999999887776555554210 01122 243 4589999999997
Q ss_pred ccc
Q psy12825 254 GVR 256 (488)
Q Consensus 254 g~~ 256 (488)
...
T Consensus 90 ~~~ 92 (155)
T cd01065 90 PVG 92 (155)
T ss_pred CCC
Confidence 433
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0028 Score=64.20 Aligned_cols=64 Identities=16% Similarity=0.264 Sum_probs=49.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||++||.|.||+.+|.+|...|+ +++.||+++++.. ..+...- .. ...++ ++.++||+||.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~--~v~v~~r~~~ka~---~~~~~~G-----a~--~a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH--EVTVYNRTPEKAA---ELLAAAG-----AT--VAASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC--EEEEEeCChhhhh---HHHHHcC-----Cc--ccCCHHHHHHhCCEEEEec
Confidence 589999999999999999999998 9999999987642 2232211 11 12333 7899999999996
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00042 Score=71.62 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=36.2
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH-----HHHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD-----RLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~-----~~~~e~~~~ 172 (488)
.||+|||+ |.||+++||+++.+++++ |++++|. ++.++.+|.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl 57 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMEL 57 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhh
Confidence 59999998 999999999999999999 9999994 255665554
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=60.49 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-CCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S-EGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l-~dADiVI 250 (488)
+..+.+||+|||+|.||..++..|...+. +|+.+|.+... ..+.++ . +...++.++ + .++|+||
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~--~V~~~d~~~~~--~~a~~~------g----v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH--TVLATSRSDYS--DIAAEL------G----VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEECccHH--HHHHHc------C----CeeeCCHHHHhhCCCCEEE
Confidence 56678899999999999999999987775 89999987531 112211 0 112345543 3 4799999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
+++
T Consensus 98 lav 100 (304)
T PLN02256 98 LCT 100 (304)
T ss_pred Eec
Confidence 996
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0097 Score=59.75 Aligned_cols=115 Identities=14% Similarity=0.241 Sum_probs=78.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc------c-----
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI------A----- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~------e----- 241 (488)
.++++.+.|.|| +.+|..+|..|+.+|. +|+|+-+++++|+..+.++++... ....+. ..|+ +
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~--v~v~vi-~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG--VEVEVI-PADLSDPEALERLEDE 77 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC--ceEEEE-ECcCCChhHHHHHHHH
Confidence 356778999999 9999999999999998 999999999999999999997531 112222 2231 1
Q ss_pred ---ccCCCcEEEEecccccCC------CcchHhhHhhhHHHHHHHH----HHHhccCCCcEEEEEe
Q psy12825 242 ---MSEGSRIVIITAGVRSLV------GETRLQLVDRNVKIFKDLI----PKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~------G~~r~dll~~N~~ii~ei~----~~I~~~~p~a~vIv~T 294 (488)
..-+.|+.|+.+|...-. -.+-.+++.-|+--...+. ..|.+. -.+.|||++
T Consensus 78 l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~G~IiNI~ 142 (265)
T COG0300 78 LKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GAGHIINIG 142 (265)
T ss_pred HHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe
Confidence 123689999999876421 1234556677765444444 444443 345677775
|
|
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0029 Score=61.68 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=75.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH----HHHHhhcCC---CC-------CCCcEEEcCCc-
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE----MLDLQHGAP---FL-------RSPKIESGSDI- 240 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~----~~dL~~~~~---~~-------~~~~v~~ttd~- 240 (488)
+.-||+|+|.|-+|++.|..++..|+ +|.||||.++.+... ..++.+.-. .. ....|..|+++
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred CccceeEeecccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 35699999999999999999999998 999999988655433 333332110 00 12345556666
Q ss_pred cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHH
Q psy12825 241 AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYIS 304 (488)
Q Consensus 241 eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~ 304 (488)
|..++|=+|-+++ ++.+...+.+.+++++..-+- .|+.+-.+.+|...+
T Consensus 80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~-tIlaSSTSt~mpS~~ 128 (313)
T KOG2305|consen 80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPT-TILASSTSTFMPSKF 128 (313)
T ss_pred HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCc-eEEeccccccChHHH
Confidence 4567775555553 566778899999999985333 566777776665544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=56.36 Aligned_cols=116 Identities=16% Similarity=0.241 Sum_probs=69.1
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE---cCCc-cccCCCcEEEEeccc
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES---GSDI-AMSEGSRIVIITAGV 255 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~---ttd~-eal~dADiVIitag~ 255 (488)
|+|+|+|.+|..+|..|...+. +|.|++... .++....+--..........+.. ..+. +....+|+||++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 7899999999999999998777 899999877 55542211111110000111111 1122 367899999999621
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
. -..+..+.++.+ .|+..++.+-|=++..-.+. ++ +|+.+|++
T Consensus 78 ~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~-~~--~~~~~v~~ 121 (151)
T PF02558_consen 78 Y----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA-EY--FPRPRVLG 121 (151)
T ss_dssp G----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH-CH--STGSGEEE
T ss_pred c----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH-HH--cCCCcEEE
Confidence 1 124456667777 46677888888777554332 22 34455653
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0039 Score=62.26 Aligned_cols=90 Identities=13% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCC--CeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIY--SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~--~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
+.+||+|||+|.||.+++..|...+.. .+++.+|++++++ .+....+. +.++++|+||++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~D~Vila 64 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PFVYLQSNEELAKTCDIIVLA 64 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------CeEEeCChHHHHHhCCEEEEE
Confidence 457999999999999999999987742 3599999876431 01223343 457899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
. +| ..+.++.+.+..+-++..+|.+.+-+.
T Consensus 65 v----kp------------~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 65 V----KP------------DLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred e----CH------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 5 21 234455555554422334555555544
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00063 Score=69.46 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=34.1
Q ss_pred EEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 133 ITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 133 i~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
|+|||+|.||+++||.++.+++++|++++| +++.+..++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL 43 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDL 43 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhH
Confidence 689999999999999999999999999999 4455555554
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0086 Score=60.34 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=62.5
Q ss_pred CceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
++||+|||+|.||..++..|...+. ..+|+++|.+. ++++. +.... ..+..+.|. +.++++|+||++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~----l~~~~-----~~~~~~~~~~e~~~~aDvVila 71 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQ----LYDKY-----PTVELADNEAEIFTKCDHSFIC 71 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHH----HHHHc-----CCeEEeCCHHHHHhhCCEEEEe
Confidence 3689999999999999999988872 25899999864 32322 22111 122334454 467899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
+. + ..+.+++..+..+ .++.++|.+.|-.+
T Consensus 72 vp----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~ 102 (277)
T PRK06928 72 VP----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS 102 (277)
T ss_pred cC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 62 1 2345566666554 34556666666554
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0042 Score=67.66 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc----ccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA----MSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e----al~dADiVIi 251 (488)
...+|++||.|.||..+|..|+..|+ +|+.||++.++.+......... ....+....+++ .++.+|+||+
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~--~V~V~NRt~~k~~~l~~~~~~~----Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCC--eEEEECCCHHHHHHHHHhhhhc----CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 45689999999999999999999998 9999999998776543322110 001122334443 4556999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
+.. +-+.+.++...+-.. .|..++|..||-
T Consensus 79 ~v~---------------~~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 79 LVK---------------AGAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred ECC---------------CcHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 962 122334443344443 577888888764
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0036 Score=63.75 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=58.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC---CCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE---GSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~---dADiVIita 253 (488)
+||+|||.|.||..++..|+..+. +|+.||+++++++.. .+. ....+.++++ ++ ++|+||++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~--~v~v~dr~~~~~~~~----~~~-------g~~~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGH--EVVGYDVNQEAVDVA----GKL-------GITARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHH----HHC-------CCeecCCHHHHHHhCCCCCEEEEEe
Confidence 489999999999999999998886 899999998766542 221 0123345533 33 379999985
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.. -+.+++++..+... .|+.++|..|+
T Consensus 68 p~---------------~~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 68 PA---------------GEVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred cC---------------chHHHHHHHHHhccCCCCCEEEECCC
Confidence 21 12334444444443 46677777754
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0073 Score=59.95 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=48.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||+|.||..++..|...+. ...+.++|.++++++.....+. .+..+.+. +.+++||+||++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---------~~~~~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---------KVRIAKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---------CceEeCCHHHHHHhCCEEEEEe
Confidence 489999999999999999988774 3457889998876654322210 12233455 4578999999996
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.016 Score=61.14 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=51.7
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIit 252 (488)
++||.|||||.||+.+|+.|++.+- .+|++.|++.+++..+........ ....+-. .|. +.+++.|+||.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v---~~~~vD~-~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKV---EALQVDA-ADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccc---eeEEecc-cChHHHHHHHhcCCEEEEe
Confidence 5799999999999999999999885 699999999887765433321100 0011111 232 568999999999
Q ss_pred cc
Q psy12825 253 AG 254 (488)
Q Consensus 253 ag 254 (488)
+.
T Consensus 76 ~p 77 (389)
T COG1748 76 AP 77 (389)
T ss_pred CC
Confidence 73
|
|
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0022 Score=65.15 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=58.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC--------CCCCCcEEEcCCc-cccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP--------FLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~--------~~~~~~v~~ttd~-eal~dAD 247 (488)
++|||-||||.||......++.+-..-+|.++|++..+....-.|---+.. .....++.+++|. .+++.||
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 469999999999987666666665445999999998877654222111100 1135667778887 5899999
Q ss_pred EEEEecccccC
Q psy12825 248 IVIITAGVRSL 258 (488)
Q Consensus 248 iVIitag~~~k 258 (488)
+|++++..|.|
T Consensus 81 lvfisvntptk 91 (481)
T KOG2666|consen 81 LVFISVNTPTK 91 (481)
T ss_pred eEEEEecCCcc
Confidence 99999987765
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0067 Score=65.75 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=64.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEEecc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVIITAG 254 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIitag 254 (488)
+|+|||.|.||..+|..|+.+|. +|++||+++++++........ ...+....++ +.++++|+||+++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~--~V~v~drt~~~~~~l~~~~~~------g~~~~~~~s~~e~v~~l~~~dvIil~v~ 72 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF--TVSVYNRTPEKTDEFLAEHAK------GKKIVGAYSIEEFVQSLERPRKIMLMVK 72 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHhhccC------CCCceecCCHHHHHhhcCCCCEEEEECC
Confidence 48999999999999999999997 899999999877654322110 0112223343 34678999999862
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC--Cch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN--PVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN--Pvd 298 (488)
++ +.+.++...+..+ .++.++|..+| |.+
T Consensus 73 ----~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~ 104 (467)
T TIGR00873 73 ----AG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPD 104 (467)
T ss_pred ----Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHH
Confidence 21 2334444555554 57788888887 444
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.004 Score=63.39 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=45.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc----ccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA----MSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e----al~dADiVIita 253 (488)
+||+|||.|.||..++..|+..+. +|.+||+++++.+.. .+. .+....+++ .+.++|+||++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~--~v~v~dr~~~~~~~~----~~~-------g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGH--EVVGYDRNPEAVEAL----AEE-------GATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCC--eEEEEECCHHHHHHH----HHC-------CCeecCCHHHHHhhcCCCCEEEEEe
Confidence 489999999999999999998886 899999998876643 211 112233443 233579999985
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0073 Score=61.95 Aligned_cols=105 Identities=16% Similarity=0.313 Sum_probs=68.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|+|||+|.||..++..|...+. .+|.++|++++++...+..+.. .+....+. +.+.++|+||.+.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g~--------~~~~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELGG--------NAVPLDELLELLNEADVVISAT 246 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcCC--------eEEeHHHHHHHHhcCCEEEECC
Confidence 457899999999999998888877553 4799999998877655544421 22222233 5688999999997
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYI 303 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~ 303 (488)
+.+.. ..++... ++.. .+..++|-+++|-|+=..+
T Consensus 247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~~~v 282 (311)
T cd05213 247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIEPEV 282 (311)
T ss_pred CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCchhh
Confidence 54321 0112221 1222 2456889999998854443
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.013 Score=55.05 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=29.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
||.|||+|.+|+.++..|+..|+ .+|+|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 69999999999999999999987 4799999864
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.013 Score=57.32 Aligned_cols=69 Identities=26% Similarity=0.408 Sum_probs=50.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc----c-ccCCCcEEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI----A-MSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~----e-al~dADiVIi 251 (488)
|+|+|+|+|.+|+++|..|...|. +++++|.++++++....+-... .-+.. .+|. + .+.+||.+|.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~~~~~------~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEFLADELDT------HVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhhhcce------EEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 689999999999999999999987 8999999998876533221111 11222 2342 3 4899999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+.+
T Consensus 73 ~t~ 75 (225)
T COG0569 73 ATG 75 (225)
T ss_pred eeC
Confidence 853
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00058 Score=70.54 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=36.0
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHHH-----HHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVDR-----LLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~~-----~~~e~~~~ 172 (488)
-||+|||+ |.||.++||+++.+++++ |++++|.. +.++.+|.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 56 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMEL 56 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHH
Confidence 49999999 999999999999999999 99999941 45555554
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=59.28 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=55.0
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
..+.++|.|+|| |.+|+.++..|+.+.-..+|++++++++++.....++.+. .+ .+. +++.++|+||.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~-------~i---~~l~~~l~~aDiVv~ 221 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG-------KI---LSLEEALPEADIVVW 221 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc-------cH---HhHHHHHccCCEEEE
Confidence 456789999999 9999999999986533458999999988777655554321 11 133 57899999999
Q ss_pred eccccc
Q psy12825 252 TAGVRS 257 (488)
Q Consensus 252 tag~~~ 257 (488)
+++.+.
T Consensus 222 ~ts~~~ 227 (340)
T PRK14982 222 VASMPK 227 (340)
T ss_pred CCcCCc
Confidence 887654
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=55.14 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.+..||+|||+|.+|+.++..|+..|+ .+|.|+|.|
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 455699999999999999999999987 489999986
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0027 Score=67.08 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHH--H---HHHHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVST--V---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivli--d---~~~~~e~~~~ 172 (488)
-||+|||+ |+||.++||+|+.+++++ ++.++ | +++.++.+|.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL 97 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMEL 97 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHH
Confidence 59999999 999999999999999999 34344 5 5566666654
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.00065 Score=70.14 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=36.3
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH---H--HHhhhCCC
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD---R--LLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~---~--~~~e~~~~ 172 (488)
.||+|||+ |.||.++||+++++++++ |++++|. . +.++.+|.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 55 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL 55 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh
Confidence 59999999 999999999999999999 9999995 2 45555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.012 Score=60.88 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
+..+.+||+|||.|++|.+++..|...|+ +|+.++.+..+....+.+. . +... +. +++++||+|++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~A~~~--G--------~~~~-s~~eaa~~ADVVvL 79 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV--DVVVGLREGSKSWKKAEAD--G--------FEVL-TVAEAAKWADVIMI 79 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC--EEEEEECCchhhHHHHHHC--C--------CeeC-CHHHHHhcCCEEEE
Confidence 55677899999999999999999988887 7888877644332222111 1 1122 44 67899999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
++
T Consensus 80 aV 81 (330)
T PRK05479 80 LL 81 (330)
T ss_pred cC
Confidence 96
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.024 Score=64.64 Aligned_cols=92 Identities=13% Similarity=0.281 Sum_probs=60.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~ 256 (488)
.||+|||+|.||..++..+...++..+|..+|+++++++. +.+.. . .....++. ++++++|+||++...
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~-a~~~g--~------~~~~~~~~~~~~~~aDvVilavp~- 73 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLEL-AVSLG--V------IDRGEEDLAEAVSGADVIVLAVPV- 73 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHH-HHHCC--C------CCcccCCHHHHhcCCCEEEECCCH-
Confidence 6899999999999999999988854579999999877653 22211 0 01123344 468899999999631
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
..+.++.+.+..+ .++.+++.++
T Consensus 74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 74 ---------------LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 2345555555555 3455554444
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.012 Score=60.98 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.++|+|||+|.+|...+..+....-..+|.++++++++++..+.++++.. ..++....|+ +++.+||+||.+.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~----g~~v~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL----GIPVTVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc----CceEEEeCCHHHHHccCCEEEEee
Confidence 46899999999999877777653335699999999999988887776432 1345555676 5789999998875
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.045 Score=60.60 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=72.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----CCC--CCCcEEEc--CCc---
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----PFL--RSPKIESG--SDI--- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~~~--~~~~v~~t--td~--- 240 (488)
..++.+.|.|+|| |.+|..++..|+..|. +|++++++.++++....++.+.. ... ....+... +|.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 3445678999999 9999999999998887 89999999888766555443210 000 01122211 122
Q ss_pred -cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+++.++|+||.++|............+..|..-...+.+.+.+..-. .+|+++
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 35889999999987643221111223344555566677766655433 345444
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=60.80 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=55.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|.+|...+..+.......+|.++|++.++++..+.++.+. ..++....+. +++++||+|+.+.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-----g~~v~~~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-----EVPVRAATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-----CCcEEEeCCHHHHhccCCEEEEec
Confidence 4689999999999986666655444679999999999998877777632 1245555666 6799999999875
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.016 Score=55.80 Aligned_cols=75 Identities=11% Similarity=0.263 Sum_probs=50.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC-------------------hhHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN-------------------EDRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~-------------------~e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|.|+|.+ ..+++..+..+.... +..++.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~i~ 94 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN---SDIQVT 94 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC---CCCEEE
Confidence 455799999999999999999999986 589999975 223344444444432 223333
Q ss_pred EcC---C---c-cccCCCcEEEEec
Q psy12825 236 SGS---D---I-AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt---d---~-eal~dADiVIita 253 (488)
... + . +.++++|+||.+.
T Consensus 95 ~~~~~i~~~~~~~~~~~~D~Vi~~~ 119 (202)
T TIGR02356 95 ALKERVTAENLELLINNVDLVLDCT 119 (202)
T ss_pred EehhcCCHHHHHHHHhCCCEEEECC
Confidence 221 1 1 3478999998885
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=57.01 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=43.5
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC--ccccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD--IAMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd--~eal~dADiVIita 253 (488)
.++|+|+|.|.||..++..|...+....++=+|.+.+.++. +.++.- ..+ .+.+ .++.++||+||+++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~-a~~lgv------~d~--~~~~~~~~~~~~aD~Vivav 72 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKA-ALELGV------IDE--LTVAGLAEAAAEADLVIVAV 72 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHH-HhhcCc------ccc--cccchhhhhcccCCEEEEec
Confidence 57999999999999999999999984334444444433321 111110 011 1223 46788999999996
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=57.66 Aligned_cols=126 Identities=18% Similarity=0.328 Sum_probs=80.6
Q ss_pred CCceEEEEecccchHHHHHHHHHc----CCC-----CeEEEEeCC------hhHHHHHHHHHhhcCCCCCCCcEEEcCCc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQ----GIY-----SNFCLIDSN------EDRCKGEMLDLQHGAPFLRSPKIESGSDI 240 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~----~l~-----~el~L~Di~------~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ 240 (488)
+..||+++|||+.|.+++..|... |+. ..++|+|.+ .+.+......+.+... .... ..++
T Consensus 24 ~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~---~~~~--~~~L 98 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTN---PEKD--WGSL 98 (255)
T ss_dssp GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSS---TTT----SSH
T ss_pred HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCc---cccc--ccCH
Confidence 446999999999999999988765 764 789999972 2233334444444321 1111 1465
Q ss_pred -cccCCC--cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCCc
Q psy12825 241 -AMSEGS--RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKNR 314 (488)
Q Consensus 241 -eal~dA--DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~r 314 (488)
++++++ |++|=+.+.+ |. +-+++.+.|.++|++.+|+=.+||.. +..+-+++++.- .-
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~g--~a 162 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTDG--RA 162 (255)
T ss_dssp HHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTTS--EE
T ss_pred HHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCCc--eE
Confidence 679999 9888776433 21 33778889999999999999999965 566677776521 23
Q ss_pred EEeecCCh
Q psy12825 315 VIGSGTNL 322 (488)
Q Consensus 315 ViG~gt~l 322 (488)
+|++|+-.
T Consensus 163 i~AtGSpf 170 (255)
T PF03949_consen 163 IFATGSPF 170 (255)
T ss_dssp EEEESS--
T ss_pred EEecCCcc
Confidence 57886543
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.013 Score=60.55 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCcEEEEecchhH--HHHHHH-HHhhhhHHHHHHHHHHHHhhhCCCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEE
Q psy12825 130 DQKITVVGAGQVG--MACTYS-ILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFC 206 (488)
Q Consensus 130 ~~ki~vvg~g~vg--~~~a~~-~~~k~la~eivlid~~~~~e~~~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~ 206 (488)
..-++++.++.+. .+.|.+ +-.|-|++ ....+|+|||+|.+|...+..++...-..+|.
T Consensus 95 G~p~a~~d~~~lT~~RTaa~sala~~~la~------------------~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~ 156 (325)
T PRK08618 95 GEVLAILDGTYLTQIRTGALSGVATKYLAR------------------EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVR 156 (325)
T ss_pred CceEEEEccchhhhhhHHHHHHHHHHHhcC------------------CCCcEEEEECCcHHHHHHHHHHHhcCCccEEE
Confidence 3467788888765 222333 22233321 12458999999999988777665433347999
Q ss_pred EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 207 LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 207 L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++|+++++.+....++.+.. ..++....|+ +++.+||+||.+.
T Consensus 157 v~~r~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 157 VYSRTFEKAYAFAQEIQSKF----NTEIYVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred EECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEcc
Confidence 99999999888777776431 1244445666 5789999999885
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.027 Score=55.27 Aligned_cols=101 Identities=27% Similarity=0.439 Sum_probs=63.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC-CCeEEEEeCC----hhHH---HHHHHHHhhcCCCCCCCcEEEcCCc-cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI-YSNFCLIDSN----EDRC---KGEMLDLQHGAPFLRSPKIESGSDI-AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l-~~el~L~Di~----~e~l---~g~~~dL~~~~~~~~~~~v~~ttd~-eal~d 245 (488)
.+..||.|+|||.+|.+++..|...|. .++|.++|++ .++. ......+.+... . ... ..++ +++++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~--~-~~~--~~~l~~~l~~ 97 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN--P-EKT--GGTLKEALKG 97 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhc--c-Ccc--cCCHHHHHhc
Confidence 455799999999999999999988776 1379999998 4443 222233332210 0 111 1244 67889
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
+|+||.+.+ +|+- . .+..+.| ++..+++..+||..
T Consensus 98 ~dvlIgaT~----~G~~-----~------~~~l~~m---~~~~ivf~lsnP~~ 132 (226)
T cd05311 98 ADVFIGVSR----PGVV-----K------KEMIKKM---AKDPIVFALANPVP 132 (226)
T ss_pred CCEEEeCCC----CCCC-----C------HHHHHhh---CCCCEEEEeCCCCC
Confidence 999999864 3331 1 1222333 36777878889964
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.03 Score=56.63 Aligned_cols=127 Identities=21% Similarity=0.372 Sum_probs=84.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHc----CC-----CCeEEEEeCCh----h--HHHHHHHHHhhcCCCCCCCcEEEcCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQ----GI-----YSNFCLIDSNE----D--RCKGEMLDLQHGAPFLRSPKIESGSD 239 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~----~l-----~~el~L~Di~~----e--~l~g~~~dL~~~~~~~~~~~v~~ttd 239 (488)
.+..||+|.|||+.|.+++..|... |+ ...++++|.+- + .+......+.+.. .. ....+
T Consensus 23 l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~---~~---~~~~~ 96 (279)
T cd05312 23 LSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD---EE---KEGKS 96 (279)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc---Cc---ccCCC
Confidence 3456999999999999999888764 65 25899999831 1 1333333343321 00 11245
Q ss_pred c-cccC--CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCC
Q psy12825 240 I-AMSE--GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKN 313 (488)
Q Consensus 240 ~-eal~--dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~ 313 (488)
+ ++++ ++|++|=+.+.+ |. +-+++.+.|.++|++.+|+-.+||.. +..+-+++.+. -+
T Consensus 97 L~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~--G~ 160 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD--GR 160 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc--CC
Confidence 5 6788 999888765432 21 33678889999999999999999964 56666777652 13
Q ss_pred cEEeecCChH
Q psy12825 314 RVIGSGTNLD 323 (488)
Q Consensus 314 rViG~gt~ld 323 (488)
.+|++|+-.+
T Consensus 161 ai~ATGsPf~ 170 (279)
T cd05312 161 ALFASGSPFP 170 (279)
T ss_pred EEEEeCCCCC
Confidence 5888876544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=57.20 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=46.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~dADiVIita 253 (488)
++||+|||+|.||..++..+...+...+ +.++|.+.++++....+. . ....+|+++ +.++|+|++++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~--------~--~~~~~~~~ell~~~DvVvi~a 69 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT--------G--AKACLSIDELVEDVDLVVECA 69 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc--------C--CeeECCHHHHhcCCCEEEEcC
Confidence 3699999999999999888876542123 568899987765432211 1 123356654 48999999996
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.029 Score=57.95 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=28.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|+||.++||.+.++++++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvD 37 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFD 37 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEe
Confidence 69999999999999999999999954 99988
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=59.28 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=53.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+|+|||+|.+|...+..+....-..+|.++|+++++++..+.++.+. ...+....+. +++++||+||.+.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-----g~~~~~~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-----GFDAEVVTDLEAAVRQADIISCAT 197 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCceEEeCCHHHHHhcCCEEEEee
Confidence 4689999999999998876665322468999999999988887777542 1134445565 5789999997664
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.047 Score=61.81 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-CCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S-EGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l-~dADiVI 250 (488)
...+++||+|||.|.||..++..|...|. +|..+|.+.... .+.++ .+...+++++ + .+||+||
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~--~V~~~dr~~~~~--~A~~~----------Gv~~~~d~~e~~~~~aDvVi 113 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLISQGH--TVLAHSRSDHSL--AARSL----------GVSFFLDPHDLCERHPDVIL 113 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHc----------CCEEeCCHHHHhhcCCCEEE
Confidence 55567899999999999999999988875 899999975431 11111 1122445543 3 5799999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 114 Lav 116 (667)
T PLN02712 114 LCT 116 (667)
T ss_pred EcC
Confidence 996
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.016 Score=59.02 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=45.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||.|.||..++..|+..++ ++.++|+++. .+. +.... .....+. +..++||+||++.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~--~v~v~~~~~~-~~~----~~~~g-------~~~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGH--QLHVTTIGPV-ADE----LLSLG-------AVSVETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC--eEEEEeCCHh-HHH----HHHcC-------CeecCCHHHHHhcCCEEEEeC
Confidence 489999999999999999999987 8899999763 222 22210 1122344 5578999999996
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.034 Score=58.63 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=41.9
Q ss_pred CCceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+||+||| .|.||..++..|...|+ +|.++|+++. .+. +.+++||+||+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~------------------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW------------------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc------------------------hhHHHHHhcCCEEEEeC
Confidence 347899999 79999999999999886 8999998531 122 3467999999996
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.03 Score=57.02 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=96.2
Q ss_pred EEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE---EcCC---c----cccC--CC
Q psy12825 180 ITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE---SGSD---I----AMSE--GS 246 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~---~ttd---~----eal~--dA 246 (488)
|.|.|| |++|+.++..|+..+. .+|+++|.++..+..+..++....... ..+.. .-.| + +.++ +.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~-~v~~~~~~vigDvrd~~~l~~~~~~~~p 78 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDP-KVRFEIVPVIGDVRDKERLNRIFEEYKP 78 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--T-TCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhccccc-CcccccCceeecccCHHHHHHHHhhcCC
Confidence 679998 9999999999988875 589999999999988888885432111 11111 1233 2 3567 99
Q ss_pred cEEEEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe----CCchhHHHHHHHhcCCCCCcEEeecC
Q psy12825 247 RIVIITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS----NPVDVLTYISWKLSGFPKNRVIGSGT 320 (488)
Q Consensus 247 DiVIitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T----NPvdi~t~~~~k~sg~p~~rViG~gt 320 (488)
|+|+-+|....-|- ....+.+..|+-=-+.+++...++.-+.+|.+-| ||.++| |.
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm----------------Ga-- 140 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM----------------GA-- 140 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH----------------HH--
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH----------------HH--
Confidence 99999985432221 2345667788877788888888887777666665 566544 22
Q ss_pred ChHHHHHHHHHHHHhCCCC----CCceeEEEeec---CCCcccccccceecCcccc
Q psy12825 321 NLDSMRFRVLLAQKLGLSP----ESVHGFIIGEH---GDSSVPVWSGVNVAGVTLK 369 (488)
Q Consensus 321 ~lds~R~~~~lA~~Lgv~p----~~V~~~V~G~H---G~~~vp~~S~a~v~g~pl~ 369 (488)
+-|+...+....+... ..+.+.=+||- ..+.+|.|.+-.-.|.|+.
T Consensus 141 ---tKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlT 193 (293)
T PF02719_consen 141 ---TKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLT 193 (293)
T ss_dssp ---HHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEE
T ss_pred ---HHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcce
Confidence 2333333444444333 11122223433 2467888887766777764
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.028 Score=56.10 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcC----C-----CCeEEEEeCCh----hH--HHHHHHHHhhcCCCCCCCcEEEcCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQG----I-----YSNFCLIDSNE----DR--CKGEMLDLQHGAPFLRSPKIESGSD 239 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~----l-----~~el~L~Di~~----e~--l~g~~~dL~~~~~~~~~~~v~~ttd 239 (488)
.+..||+|.|||+.|.+++..|...+ + ...++++|..- ++ +......+.+. ..... ...+
T Consensus 23 l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~---~~~~~--~~~~ 97 (254)
T cd00762 23 ISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARF---ANPER--ESGD 97 (254)
T ss_pred hhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHH---cCccc--ccCC
Confidence 34469999999999999998886543 2 23899999731 11 22222222211 11111 1246
Q ss_pred c-cccC--CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCC
Q psy12825 240 I-AMSE--GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKN 313 (488)
Q Consensus 240 ~-eal~--dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~ 313 (488)
+ ++++ ++|++|=..+++ |. +-+++.+.|.++|++.+|+=.+||.. +..+-+++++. -+
T Consensus 98 L~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~--G~ 161 (254)
T cd00762 98 LEDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE--GR 161 (254)
T ss_pred HHHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcC--CC
Confidence 5 6788 999888765433 21 33678888999999999999999974 66777777762 24
Q ss_pred cEEeecCChHH
Q psy12825 314 RVIGSGTNLDS 324 (488)
Q Consensus 314 rViG~gt~lds 324 (488)
.+|++|...+.
T Consensus 162 ai~AtGspf~p 172 (254)
T cd00762 162 AIFASGSPFHP 172 (254)
T ss_pred EEEEECCCCCC
Confidence 68999876543
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=59.21 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|.++...+..|+...-..+|.+++++.++++..+.++.+.. ..++....+. +++.+||+||.+.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~----g~~v~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL----GIDVTAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhccCCEEEEec
Confidence 46899999999999888888643334689999999999988887776431 1244445565 5689999999985
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.018 Score=58.29 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=45.2
Q ss_pred EEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 182 VVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 182 IIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||.|.||..++..|+..+. +|.+||+++++.+.. ... .+..+.++ +.+++||+||++.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~--~V~v~dr~~~~~~~l----~~~-------g~~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH--PVRVFDLFPDAVEEA----VAA-------GAQAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC--eEEEEeCCHHHHHHH----HHc-------CCeecCCHHHHHhcCCEEEEeC
Confidence 58999999999999998887 899999998776543 221 11234455 5789999999996
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.031 Score=57.61 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=44.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
+.+||+|||+|+||.+++..|...++ ++++++. +.+.++. +... .+..++..+++++||+|++++
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~~~----a~~~-------Gv~~~s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL--NVIVGLRKGGASWKK----ATED-------GFKVGTVEEAIPQADLIMNLL 67 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC--eEEEEECcChhhHHH----HHHC-------CCEECCHHHHHhcCCEEEEeC
Confidence 45799999999999999999998886 6666554 3333322 1111 011222335789999999997
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.064 Score=55.19 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHH-HhhhCC--CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC
Q psy12825 153 TMARDAVSTVDRL-LSQVAP--SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL 229 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~--~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~ 229 (488)
.+++.+...+... .++... ......++|+|||.|.||..++..|..-|. +|..||...+...+ .
T Consensus 109 ~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~--~V~~~~~~~~~~~~----~------- 175 (312)
T PRK15469 109 HWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF--PLRCWSRSRKSWPG----V------- 175 (312)
T ss_pred HHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCCCCC----c-------
Confidence 4666665544322 122211 134567899999999999999998876666 89999975432110 0
Q ss_pred CCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 230 RSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 230 ~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..+....++ +.+++||+|+++.. .. ..|..++- .+.+....|++++||++-
T Consensus 176 --~~~~~~~~l~e~l~~aDvvv~~lP-----lt------~~T~~li~--~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 176 --QSFAGREELSAFLSQTRVLINLLP-----NT------PETVGIIN--QQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred --eeecccccHHHHHhcCCEEEECCC-----CC------HHHHHHhH--HHHHhcCCCCcEEEECCC
Confidence 011111244 56899999999852 11 12223332 344556668899999873
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.027 Score=61.79 Aligned_cols=107 Identities=14% Similarity=0.281 Sum_probs=68.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
....+|+|||+|.||..++..|...|. .+|++++++.++++.....+... ...+....+. +.+.+||+||.+.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g~-----~i~~~~~~dl~~al~~aDVVIsAT 337 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPDV-----EIIYKPLDEMLACAAEADVVFTST 337 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCCC-----ceEeecHhhHHHHHhcCCEEEEcc
Confidence 557899999999999999999987774 47999999998887655444211 0111122343 5789999999886
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhc----cCCCcEEEEEeCCchhH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAK----GSPDCILLIISNPVDVL 300 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~----~~p~a~vIv~TNPvdi~ 300 (488)
+.+... +..+..+.+.. ....-++|-++.|-|+=
T Consensus 338 ~s~~pv-------------I~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId 375 (519)
T PLN00203 338 SSETPL-------------FLKEHVEALPPASDTVGGKRLFVDISVPRNVG 375 (519)
T ss_pred CCCCCe-------------eCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence 433210 12233333321 11234678889997643
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.025 Score=60.52 Aligned_cols=108 Identities=15% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+..+|+|||+|.+|..++..|...|. .+|+++|++.+++...+.++.. .+....+. +.+.++|+||.+.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g~--------~~~~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFGG--------EAIPLDELPEALAEADIVISST 250 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcCC--------cEeeHHHHHHHhccCCEEEECC
Confidence 456799999999999999988887664 4799999998877655444321 12222333 5688999999987
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTY 302 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~ 302 (488)
+.+... . +.+.++.... .+...+.++|-+++|-|+=..
T Consensus 251 ~s~~~~-i--------~~~~l~~~~~--~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 251 GAPHPI-I--------GKGMVERALK--ARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred CCCCcE-E--------cHHHHHHHHh--hccCCCeEEEEeCCCCCCccc
Confidence 544211 0 1111111110 122345788999999875433
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.024 Score=58.15 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
+.++|.|+|| |.+|++++..|+..+...+|+++|.+.........++.. ....+... +|+ +.+++.|+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA-----PCLRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC-----CcEEEEEccCCCHHHHHHHHhcCCE
Confidence 4678999998 999999999999876334899999876544322222211 01111111 232 35678999
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++....+ ..+..+.+..|+.-...+.+.+.+.... .+|++|
T Consensus 78 Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 78 VVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred EEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 99998754222 2234566788888888888887776433 455554
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.036 Score=54.18 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=65.0
Q ss_pred ceEEEEecccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cCCCcEEEEeccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~dADiVIitag~ 255 (488)
+||.|||+|.+|..+...+-... -+.-+.+||.+.+++.....-+.. +. .++.++ +.+.|++|++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~-------~~---~s~ide~~~~~DlvVEaAS- 69 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGR-------RC---VSDIDELIAEVDLVVEAAS- 69 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCC-------Cc---cccHHHHhhccceeeeeCC-
Confidence 58999999999988766554442 245678899999877643222211 11 145544 599999999974
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.+-++++..++=+...|.+|+-++--+|
T Consensus 70 ---------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 ---------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred ---------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 3567888888888877876665554443
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.031 Score=49.90 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=49.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEEEc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIESG 237 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~~t 237 (488)
..||+|+|+|.+|+.++..|+..|+ .++.|+|.+. .+.+.....+.... +..++...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n---p~~~v~~~ 77 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN---PDVEVEAI 77 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS---TTSEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc---Cceeeeee
Confidence 4699999999999999999999987 5899999521 23444444444432 23444432
Q ss_pred CC-c------cccCCCcEEEEec
Q psy12825 238 SD-I------AMSEGSRIVIITA 253 (488)
Q Consensus 238 td-~------eal~dADiVIita 253 (488)
.. . +.++++|+||.+.
T Consensus 78 ~~~~~~~~~~~~~~~~d~vi~~~ 100 (135)
T PF00899_consen 78 PEKIDEENIEELLKDYDIVIDCV 100 (135)
T ss_dssp ESHCSHHHHHHHHHTSSEEEEES
T ss_pred ecccccccccccccCCCEEEEec
Confidence 21 1 3477999999885
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.025 Score=57.85 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=57.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|||+|..+...+..++.-....+|.+||+++++++..+.++.+.. ..++....+. +++.+||+|+.+.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~----~~~v~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF----GVDIRPVDNAEAALRDADTITSIT 190 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEec
Confidence 46899999999998877766654446799999999999998888887632 2356655666 6799999999764
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.024 Score=57.99 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=54.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..+|+|||+|.+|...+..+.......+|.++|+++++++..+.++.+. ...+. ..+. +++.+||+||.+..
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-----~~~~~-~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-----GPTAE-PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCeeE-ECCHHHHhhcCCEEEEccC
Confidence 4689999999999998888865322368999999999998887777642 11233 3455 57999999999853
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.021 Score=60.97 Aligned_cols=107 Identities=17% Similarity=0.248 Sum_probs=67.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+..+|+|+|+|.+|..++..|...|. .+|+++|++.++++..+..+.. ......+. +.+.++|+||.+.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~--------~~i~~~~l~~~l~~aDvVi~aT 248 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG--------EAVKFEDLEEYLAEADIVISST 248 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC--------eEeeHHHHHHHHhhCCEEEECC
Confidence 456799999999999999999887763 4899999998877655444321 11112233 5688999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTY 302 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~ 302 (488)
+.+..- . +.+.++.. +..-....+++-+++|-|+=..
T Consensus 249 ~s~~~i-i--------~~e~l~~~---~~~~~~~~~viDla~Prdid~~ 285 (417)
T TIGR01035 249 GAPHPI-V--------SKEDVERA---LRERTRPLFIIDIAVPRDVDPA 285 (417)
T ss_pred CCCCce-E--------cHHHHHHH---HhcCCCCeEEEEeCCCCCCChh
Confidence 544211 1 11111111 1111124578889999875443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.024 Score=58.33 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=51.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+++|||+|..+...+..++.--...+|.+||+++++++..+.++.+ . ...+....|. +++++||+|+.+.
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~----~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L----GVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C----CTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c----cccceeccchhhhcccCCEEEEcc
Confidence 48999999999988777665533368999999999999998888887 2 3466777776 6899999988764
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.059 Score=57.63 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=71.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
++.++|.|+|+|.+|..+|..|+..|. +|+++|.+. +.+.....++... ..++...... +...++|+||.+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL-----GIELVLGEYPEEFLEGVDLVVVS 75 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-----CCEEEeCCcchhHhhcCCEEEEC
Confidence 356799999999999999999999997 899999975 3333333344321 1223222222 346789999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWK 306 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k 306 (488)
++.+... ......-..++++++..+...... + ..+|-+|-... ++++++..
T Consensus 76 ~g~~~~~-~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 76 PGVPLDS-PPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCC-HHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8764211 111111234566655544433322 2 34666665543 55565543
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.088 Score=48.60 Aligned_cols=90 Identities=27% Similarity=0.332 Sum_probs=63.8
Q ss_pred EEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEEEEe
Q psy12825 180 ITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIVIIT 252 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiVIit 252 (488)
|+|+|| |.+|..++..|+.++. +|+++-+++++++. + ...++... .|+ ++++++|.||.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~~------~-----~~~~~~~~d~~d~~~~~~al~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAED------S-----PGVEIIQGDLFDPDSVKAALKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHHH------C-----TTEEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhccc------c-----cccccceeeehhhhhhhhhhhhcchhhhh
Confidence 789999 9999999999999995 99999999886654 1 11122221 232 479999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++.+.+ .....+.+.+.+++.... .++++|
T Consensus 68 ~~~~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 68 AGPPPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp CHSTTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hhhhcc-----------cccccccccccccccccc-cceeee
Confidence 864433 156677788888776544 345544
|
... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.036 Score=56.35 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|+|+|.+|..++..|...|. +|.++|++++++... ... . .......++ +.++++|+||++
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~~-~~~--g------~~~~~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA--RVFVGARSSADLARI-TEM--G------LIPFPLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHC--C------CeeecHHHHHHHhccCCEEEEC
Confidence 4567899999999999999999987775 899999988654321 111 0 111112233 468899999998
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCchhHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVDVLTYISWK 306 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvdi~t~~~~k 306 (488)
.... ++ + . ..+....|++++|++ ++|..+--..+++
T Consensus 217 ~P~~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~tdf~~Ak~ 253 (287)
T TIGR02853 217 IPAL---------VL--T----A---DVLSKLPKHAVIIDLASKPGGTDFEYAKK 253 (287)
T ss_pred CChH---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCCCHHHHHH
Confidence 6211 11 1 1 223444567888877 4775532244444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.029 Score=56.86 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.+++.|||||.++.++++.|+..|. .+|.+++++.++++..+.++.... ....+....+. +.+.++|+||.+.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~~---~~~~~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQVG---VITRLEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhcC---cceeccchhhhhhcccCCCEEEECC
Confidence 456789999999999999999998875 479999999998887776654321 00011111122 4568899999986
Q ss_pred cc
Q psy12825 254 GV 255 (488)
Q Consensus 254 g~ 255 (488)
..
T Consensus 199 p~ 200 (282)
T TIGR01809 199 PA 200 (282)
T ss_pred CC
Confidence 43
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.081 Score=56.89 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=70.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--cccCCCcEEEEe
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--eal~dADiVIit 252 (488)
+.|||.|+|+ |.+|+.++..|+.+|. +|+.+|........ .+.+... .....+. ..|. ..+.++|+||-+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~---~~~~~~~-~~~~~~~-~~Di~~~~~~~~D~ViHl 191 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKE---NLVHLFG-NPRFELI-RHDVVEPILLEVDQIYHL 191 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHh---Hhhhhcc-CCceEEE-ECccccccccCCCEEEEC
Confidence 4589999998 9999999999999886 89999974321111 1111110 0111222 2342 357899999999
Q ss_pred ccccc--CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRS--LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~--k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++... ....+..+.+..|+..-..+.+.+.+... .+|+++
T Consensus 192 Aa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 192 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred ceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 86432 11224556778899988889888887643 455554
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.025 Score=58.59 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=46.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|||+|.+|..++..|+. ++.-+|..+|.+..... ... +....++ +.+++||+|+++
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~------~~~--------~~~~~~l~ell~~aDvIvl~ 207 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA------ATY--------VDYKDTIEEAVEGADIVTLH 207 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHhH------Hhh--------ccccCCHHHHHHhCCEEEEe
Confidence 4567899999999999999998853 44448999998754221 111 1123455 568999999999
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 208 l 208 (332)
T PRK08605 208 M 208 (332)
T ss_pred C
Confidence 6
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.087 Score=57.77 Aligned_cols=218 Identities=17% Similarity=0.201 Sum_probs=129.3
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE--Ec--CCc----ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE--SG--SDI----AMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~--~t--td~----eal 243 (488)
+-.+.+.|.|.|| |++|+.+...++..+. .+|+++|.++..+..+..++.+.. + ..++. .. .|+ .++
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~--~-~~~~~~~igdVrD~~~~~~~~ 321 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKF--P-ELKLRFYIGDVRDRDRVERAM 321 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhC--C-CcceEEEecccccHHHHHHHH
Confidence 4446789999999 9999999998888754 699999999999988888888753 2 22222 11 233 468
Q ss_pred CC--CcEEEEecccccCCCcc--hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe----CCchhHHHHHHHhcCCCCCcE
Q psy12825 244 EG--SRIVIITAGVRSLVGET--RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS----NPVDVLTYISWKLSGFPKNRV 315 (488)
Q Consensus 244 ~d--ADiVIitag~~~k~G~~--r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T----NPvdi~t~~~~k~sg~p~~rV 315 (488)
++ .|+|+=+|....-|-.+ ..+-+..|+-=-..+++...++.=+.++.+-| ||.|+|
T Consensus 322 ~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm--------------- 386 (588)
T COG1086 322 EGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM--------------- 386 (588)
T ss_pred hcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh---------------
Confidence 88 99999998655445433 45556777777778888877776666566655 666654
Q ss_pred EeecCChHHHHHHHHHHHHhCCCC----CCcee----EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHH
Q psy12825 316 IGSGTNLDSMRFRVLLAQKLGLSP----ESVHG----FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRL 387 (488)
Q Consensus 316 iG~gt~lds~R~~~~lA~~Lgv~p----~~V~~----~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el 387 (488)
|. +-|+...+...++-.. ..+.+ -|+|.- .+.+|+|.+---.|.|+.=.-|....+|- ...|-
T Consensus 387 -Ga-----TKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-GSViPlFk~QI~~GgplTvTdp~mtRyfM--TI~EA 457 (588)
T COG1086 387 -GA-----TKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-GSVIPLFKKQIAEGGPLTVTDPDMTRFFM--TIPEA 457 (588)
T ss_pred -hH-----HHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-CCCHHHHHHHHHcCCCccccCCCceeEEE--EHHHH
Confidence 22 2233333333332211 11212 355543 47899998766666665422122110110 12334
Q ss_pred HHHHhhhHHHHHHhcCCcch----hhHHHHHHHHHHHH
Q psy12825 388 HADVVNSAYEVIKLKGYTSW----ALGLSVASISHTLL 421 (488)
Q Consensus 388 ~~~v~~~~~eIi~~kg~t~~----s~A~a~~~ii~aIl 421 (488)
.+.|.+++.. .+|+.-| |...-+.++++++.
T Consensus 458 v~LVlqA~a~---~~gGeifvldMGepvkI~dLAk~mi 492 (588)
T COG1086 458 VQLVLQAGAI---AKGGEIFVLDMGEPVKIIDLAKAMI 492 (588)
T ss_pred HHHHHHHHhh---cCCCcEEEEcCCCCeEHHHHHHHHH
Confidence 4444444422 3343333 34445677888774
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.025 Score=54.66 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=46.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc--cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI--AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~--eal~dADiVIi 251 (488)
.+.+||.|||+|.+|..-+..|+..|- .|++++.+.. . ...++.+. .++.. ..+| +++.++|+||.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga--~VtVvsp~~~--~-~l~~l~~~------~~i~~~~~~~~~~dl~~~~lVi~ 75 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA--QLRVIAEELE--S-ELTLLAEQ------GGITWLARCFDADILEGAFLVIA 75 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC--EEEEEcCCCC--H-HHHHHHHc------CCEEEEeCCCCHHHhCCcEEEEE
Confidence 356799999999999998888888775 8999987543 1 12223221 12322 2233 57999999998
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+.+
T Consensus 76 at~ 78 (205)
T TIGR01470 76 ATD 78 (205)
T ss_pred CCC
Confidence 853
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.043 Score=52.90 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CC--ccccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SD--IAMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td--~eal~dADiVIi 251 (488)
.+.+||.|||+|.+|...+..|...+. +|++++.+.. +. ..++.+. ..+... .. .+++.++|+||.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga--~V~VIs~~~~--~~-l~~l~~~------~~i~~~~~~~~~~~l~~adlVia 76 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGA--HIVVISPELT--EN-LVKLVEE------GKIRWKQKEFEPSDIVDAFLVIA 76 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCCC--HH-HHHHHhC------CCEEEEecCCChhhcCCceEEEE
Confidence 456899999999999999999988885 8999976431 11 1222221 112221 12 357999999888
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 77 aT 78 (202)
T PRK06718 77 AT 78 (202)
T ss_pred cC
Confidence 75
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.1 Score=54.18 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHH-HhhhCC----------C-CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH
Q psy12825 153 TMARDAVSTVDRL-LSQVAP----------S-IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML 220 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~----------~-~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~ 220 (488)
.+++.+...++.. .++... . .....++|+|||.|.||..+|..+..-|. +|..||++.....
T Consensus 114 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~---- 187 (333)
T PRK13243 114 ATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGM--RILYYSRTRKPEA---- 187 (333)
T ss_pred HHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCChhh----
Confidence 5777777666443 222210 0 23467899999999999999998876665 8999998654221
Q ss_pred HHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 221 DLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 221 dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.... +.. .++ +.+++||+|+++.... ..+..++- .+.+....|.+++||++
T Consensus 188 ~~~~~--------~~~-~~l~ell~~aDiV~l~lP~t-----------~~T~~~i~--~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 188 EKELG--------AEY-RPLEELLRESDFVSLHVPLT-----------KETYHMIN--EERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHcC--------CEe-cCHHHHHhhCCEEEEeCCCC-----------hHHhhccC--HHHHhcCCCCeEEEECc
Confidence 11110 112 245 4689999999996211 01112221 12344446789899887
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.046 Score=51.82 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=53.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE--cCCc----cccCCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES--GSDI----AMSEGS 246 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~--ttd~----eal~dA 246 (488)
..+.+++.|+|+ |.+|..++..|+..+. +|.+++++.++++....++.+.. ...+.. ..+. ++++++
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~ 98 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF----GEGVGAVETSDDAARAAAIKGA 98 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc----CCcEEEeeCCCHHHHHHHHhcC
Confidence 345689999997 9999999999988774 89999999888877666664321 112222 1232 568899
Q ss_pred cEEEEec
Q psy12825 247 RIVIITA 253 (488)
Q Consensus 247 DiVIita 253 (488)
|+||.+.
T Consensus 99 diVi~at 105 (194)
T cd01078 99 DVVFAAG 105 (194)
T ss_pred CEEEECC
Confidence 9888875
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.026 Score=56.82 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVII 251 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIi 251 (488)
.|+++||+|||+|.+|..++..|.......+|. ++|.++++.+..+..+.. . ...++++ -+.++|+|++
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-------~--~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-------P--PPVVPLDQLATHADIVVE 73 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-------C--cccCCHHHHhcCCCEEEE
Confidence 367799999999999999888887641112554 889998776544332210 1 1234554 3678999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
++
T Consensus 74 ~t 75 (271)
T PRK13302 74 AA 75 (271)
T ss_pred CC
Confidence 96
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.11 Score=56.14 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=51.0
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh-HHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED-RCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e-~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIi 251 (488)
...+.++|+|||+|.+|..+|..|...|. +|+++|.++. ........+.+. ...+....+.+...++|+||+
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~-----gv~~~~~~~~~~~~~~D~Vv~ 84 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL-----GATVRLGPGPTLPEDTDLVVT 84 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc-----CCEEEECCCccccCCCCEEEE
Confidence 34456799999999999999988888887 8999997543 222222334321 123332222234567999999
Q ss_pred eccccc
Q psy12825 252 TAGVRS 257 (488)
Q Consensus 252 tag~~~ 257 (488)
+.|++.
T Consensus 85 s~Gi~~ 90 (480)
T PRK01438 85 SPGWRP 90 (480)
T ss_pred CCCcCC
Confidence 988753
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.025 Score=60.42 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
..+.+||.|||+|.||..++..|...|. .+|.++.++.++++..+..+.. ..+....+ ++.+.+||+||.+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~-------~~~~~~~~l~~~l~~aDiVI~a 249 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRN-------ASAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcC-------CeEecHHHHHHHhccCCEEEEC
Confidence 3456799999999999999999988775 4899999998877665554421 12222234 3678999999999
Q ss_pred ccccc
Q psy12825 253 AGVRS 257 (488)
Q Consensus 253 ag~~~ 257 (488)
.+.|.
T Consensus 250 T~a~~ 254 (414)
T PRK13940 250 VNVLE 254 (414)
T ss_pred cCCCC
Confidence 76553
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.045 Score=56.43 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=55.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|..+...+..+..-....+|.+||+++++++..+..+.+. ...+....+. +++++||+|+.+.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-----GFAVNTTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-----CCcEEEECCHHHHhcCCCEEEEec
Confidence 4689999999999887777665444589999999999998777666542 2345555665 6799999999874
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.049 Score=55.60 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
.....||.|+|+|.+|..++..|...|. +|..+|+++++.+ .+.++. .+.....+. +.++++|+||.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~-~~~~~G--------~~~~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA--NVTVGARKSAHLA-RITEMG--------LSPFHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH-HHHHcC--------CeeecHHHHHHHhCCCCEEEEC
Confidence 4467899999999999999998887775 8999999876543 222211 111112233 568899999998
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 218 ~ 218 (296)
T PRK08306 218 I 218 (296)
T ss_pred C
Confidence 5
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0039 Score=63.90 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=30.6
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|.||+++|+.+..+++++|++++|
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 38999999999999999999999999999998
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.057 Score=54.14 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~eal~dADiVIita 253 (488)
.+.++|.|+|+|.+|.+++..|+..+. +|.++|+++++++..+.++.... .+. .+.+...+.++|+||.+.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~~------~~~~~~~~~~~~~~~DivInat 186 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRYG------EIQAFSMDELPLHRVDLIINAT 186 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhcC------ceEEechhhhcccCccEEEECC
Confidence 345689999999999999999998775 89999999888876666654311 111 111223456899999997
Q ss_pred ccc
Q psy12825 254 GVR 256 (488)
Q Consensus 254 g~~ 256 (488)
+..
T Consensus 187 p~g 189 (270)
T TIGR00507 187 SAG 189 (270)
T ss_pred CCC
Confidence 543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.029 Score=48.20 Aligned_cols=90 Identities=19% Similarity=0.240 Sum_probs=59.3
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEEEe
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVIIT 252 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVIit 252 (488)
|.|+|.|.+|..++..|...+. +++++|.+++..+....+. ..+... +|. ..+++||.||++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~--~vvvid~d~~~~~~~~~~~---------~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI--DVVVIDRDPERVEELREEG---------VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHTT---------SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCC--EEEEEECCcHHHHHHHhcc---------cccccccchhhhHHhhcCccccCEEEEc
Confidence 6899999999999999988664 8999999998765432222 122221 222 358899999998
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+ |-..-..++..+++..|+..++...+
T Consensus 70 ~~---------------~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 TD---------------DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SS---------------SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred cC---------------CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 52 12233445666677777766665554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=54.51 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=58.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
..+.+||.|||||-||.-++..|..+++ ..|++..++.++++..+.++. ..+..-.+ .+.+.++|+||.+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~--------~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG--------AEAVALEELLEALAEADVVISS 245 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC--------CeeecHHHHHHhhhhCCEEEEe
Confidence 3567889999999999999999999997 589999999988877766665 12222234 3679999999999
Q ss_pred ccccc
Q psy12825 253 AGVRS 257 (488)
Q Consensus 253 ag~~~ 257 (488)
.+.|.
T Consensus 246 Tsa~~ 250 (414)
T COG0373 246 TSAPH 250 (414)
T ss_pred cCCCc
Confidence 76553
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.088 Score=53.49 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+..+|+|+|||.++.++++.|+..+. .+|++++++.++++..+..+.+... ........+.+.+.++|+||.+..
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~~---~~~~~~~~~~~~~~~~dliINaTp 199 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELGA---AVEAAALADLEGLEEADLLINATP 199 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhccc---ccccccccccccccccCEEEECCC
Confidence 356789999999999999999999985 5899999999988877666664321 001111223344447999999864
Q ss_pred c
Q psy12825 255 V 255 (488)
Q Consensus 255 ~ 255 (488)
.
T Consensus 200 ~ 200 (283)
T COG0169 200 V 200 (283)
T ss_pred C
Confidence 3
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.046 Score=50.59 Aligned_cols=66 Identities=9% Similarity=0.220 Sum_probs=44.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--eal~dADiVIit 252 (488)
.+.++|.|||+|.+|...+..|+..+. +|++++.+ ..+.. .++.. ..+ ....| ++++++|+||.+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga--~V~VIsp~--~~~~l-~~l~~-------i~~-~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA--FVTVVSPE--ICKEM-KELPY-------ITW-KQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCc--cCHHH-HhccC-------cEE-EecccChhcCCCceEEEEC
Confidence 456899999999999999999988886 88898643 22221 12211 111 11233 579999999987
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 78 T 78 (157)
T PRK06719 78 T 78 (157)
T ss_pred C
Confidence 4
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.3 Score=48.46 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=39.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|| |.+|..++..|+.+|. +|+++|.+.+.++....++.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 51 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELR 51 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHH
Confidence 45578999998 9999999999999886 89999998877776666654
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.044 Score=57.90 Aligned_cols=75 Identities=12% Similarity=0.125 Sum_probs=57.0
Q ss_pred CceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|||+|..+...+..++.- ....+|.+||+++++++..+.++.+.. .....+....+. +++.+||+|+.+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~--~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY--PQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc--CCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 46899999999998877776653 336799999999999998888887542 111246666676 6799999998764
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.12 Score=54.09 Aligned_cols=132 Identities=11% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|||.|.+|..+|..+..-|. +|+.||++..........+................++ +.++.||+|+++
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 4567899999999999999998865555 8999998632211100000000000000000012244 568999999998
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDS 324 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds 324 (488)
.... ..|-.++- .+.+....|.+++||++--.=+-...+.+. +...++.|. .+|.
T Consensus 234 lPlt-----------~~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~A--L~~g~i~gA--aLDV 288 (347)
T PLN02928 234 CTLT-----------KETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAA--LESGHLGGL--AIDV 288 (347)
T ss_pred CCCC-----------hHhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEE--EEcc
Confidence 6211 11222222 344555567899999974321222233332 233466555 3554
|
|
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.17 Score=52.25 Aligned_cols=132 Identities=14% Similarity=0.275 Sum_probs=83.3
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHc--C---CCCeEEEEeCChhHHHH---HHHHHhhc----C-CCC---CCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQ--G---IYSNFCLIDSNEDRCKG---EMLDLQHG----A-PFL---RSPKIES 236 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~--~---l~~el~L~Di~~e~l~g---~~~dL~~~----~-~~~---~~~~v~~ 236 (488)
..+.+.||+|||+|.=|+++|..+... . +..+|..+=..+ +..+ ...|+-.. . +++ ...++.+
T Consensus 17 ~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee-~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 17 AERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEE-EINGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred hhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEecc-ccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 344578999999999999998877654 1 223555553222 1222 22222111 1 111 2456888
Q ss_pred cCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC--------C-chhHHHHHH
Q psy12825 237 GSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN--------P-VDVLTYISW 305 (488)
Q Consensus 237 ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN--------P-vdi~t~~~~ 305 (488)
.+|. ++++|||++|+.. |. ..+..++++|..+ .|++..|-.+. | ..++++++.
T Consensus 96 v~dl~ea~~dADilvf~v-----Ph-----------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~ 159 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVV-----PH-----------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH 159 (372)
T ss_pred cchHHHHhccCCEEEEeC-----Ch-----------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence 8897 7899999999985 21 3567788888887 56665555432 2 457888998
Q ss_pred HhcCCCCCcEEeecCChH
Q psy12825 306 KLSGFPKNRVIGSGTNLD 323 (488)
Q Consensus 306 k~sg~p~~rViG~gt~ld 323 (488)
+..|+|-. +. +|.++.
T Consensus 160 ~~lgI~~~-vL-~GaNiA 175 (372)
T KOG2711|consen 160 RALGIPCS-VL-MGANIA 175 (372)
T ss_pred HHhCCCce-ee-cCCchH
Confidence 88888865 33 556654
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.16 Score=52.43 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=55.3
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhHHH-HHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHh
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDRCK-GEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQ 265 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~l~-g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~d 265 (488)
-|.++|..|+..|+ +|++||++.++++ .....+.+.- ...+.+. ++.++||+||++..
T Consensus 31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG-------A~~AaS~aEAAa~ADVVIL~LP----------- 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG-------VKVVSDDKEAAKHGEIHVLFTP----------- 90 (341)
T ss_pred CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC-------CeecCCHHHHHhCCCEEEEecC-----------
Confidence 36778888888887 8999999877553 2334444321 1223344 78899999999952
Q ss_pred hHhhhHHHHHHHHHHHhccC-CCcEEEEEe-CCchhHHHHHH
Q psy12825 266 LVDRNVKIFKDLIPKIAKGS-PDCILLIIS-NPVDVLTYISW 305 (488)
Q Consensus 266 ll~~N~~ii~ei~~~I~~~~-p~a~vIv~T-NPvdi~t~~~~ 305 (488)
|....++++..+.... +..++|..| -+.+..-+.+.
T Consensus 91 ----d~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e 128 (341)
T TIGR01724 91 ----FGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLE 128 (341)
T ss_pred ----CHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 3334444444444443 445444443 33334444443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.058 Score=51.88 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIi 251 (488)
..++.++|+|+|.|.||+.++..|...|. +|+.+|+++++++....++. .... +..+.+ .+||+++.
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~--~Vvv~D~~~~~~~~~~~~~g--------~~~v--~~~~l~~~~~Dv~vp 91 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGA--KLIVADINEEAVARAAELFG--------ATVV--APEEIYSVDADVFAP 91 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHcC--------CEEE--cchhhccccCCEEEe
Confidence 45677899999999999999999998887 89999999877665443321 1111 111222 38999997
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
++
T Consensus 92 ~A 93 (200)
T cd01075 92 CA 93 (200)
T ss_pred cc
Confidence 75
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0047 Score=63.76 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCcEEEEec-chhHHHHHHHHHhhhhHHHHHHHHH-HHHhhhCC
Q psy12825 129 PDQKITVVGA-GQVGMACTYSILTQTMARDAVSTVD-RLLSQVAP 171 (488)
Q Consensus 129 ~~~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid~-~~~~e~~~ 171 (488)
+..||+|||+ |.||.++||++..+++++|++++|. ++.++.+|
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~D 51 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAAD 51 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccc
Confidence 4469999999 9999999999999999999999995 33444444
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.18 Score=49.04 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=69.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++.+++..+....++.+.. .++. ...|. +
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG-----GKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC-----ceEEEEECCCCCHHHHHHHHHH
Confidence 45678999999 9999999999999887 89999999877776666665421 1221 12232 1
Q ss_pred ---ccCCCcEEEEecccccCC---C---cchHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEe
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---G---ETRLQLVDRNVKI----FKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G---~~r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~T 294 (488)
.+.+.|+||-+++..... . ....+.+..|+.- .+.+.+.+.+.++...+++++
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 78 VAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred HHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 123489999998764211 1 1122334455543 555666663333344455554
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.17 Score=52.09 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=69.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
+.++|.|+|| |.+|++++..|+..|. +|++++++.+.+.... ++...........+... +|. +.++++|+
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVK-HLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHH-HHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 4568999998 9999999999999887 8888888765444322 22111000001111111 122 35778999
Q ss_pred EEEecccccCCCcc-hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVGET-RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G~~-r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||-+++........ ..+.+..|+.-...+.+.+.+...-..+|++|
T Consensus 81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S 127 (351)
T PLN02650 81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS 127 (351)
T ss_pred EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 99998643211112 23456778888888888877754223455544
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.068 Score=53.88 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=55.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIita 253 (488)
.+.+++.|+|+|.+|.+++..|...+. .+|.+++++.++++..+.++.... .+....+ .+.+.++|+||.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~~------~~~~~~~~~~~~~~~DivInaT 193 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGALG------KAELDLELQEELADFDLIINAT 193 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc------ceeecccchhccccCCEEEECC
Confidence 456789999999999999999997774 489999999988877666654321 1222113 25688999999996
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
..+.
T Consensus 194 p~g~ 197 (278)
T PRK00258 194 SAGM 197 (278)
T ss_pred cCCC
Confidence 5443
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.052 Score=56.69 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=55.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..+++|||+|..+...+..++.--...+|.+||+++++.+..+.++.+. ..++....+. +++++||+|+.+.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-----GLRIVACRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCHHHHHhcCCEEEEec
Confidence 4689999999998876665554334579999999999998888887652 2356556676 6799999999875
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.046 Score=54.85 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=59.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc--CCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS--EGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal--~dADiVIita 253 (488)
+||+|||+|.+|..++..+..... ..-+.++|.++++.+... .. ....+|+++| .+.|+||+++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----~~--------~~~~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----GR--------VALLDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----cc--------CcccCCHHHHhhcCCCEEEECC
Confidence 699999999999999888766532 222445777765554422 11 1134566664 7899999998
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ ...+++++..+=+...|-+++-++
T Consensus 71 ~----------------~~av~e~~~~iL~~g~dlvv~SvG 95 (267)
T PRK13301 71 G----------------QQAIAEHAEGCLTAGLDMIICSAG 95 (267)
T ss_pred C----------------HHHHHHHHHHHHhcCCCEEEEChh
Confidence 5 357888998887776665444333
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.15 Score=57.73 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=45.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC-CCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE-GSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~-dADiVIit 252 (488)
.+.+||+|||+|.||..++..|...|. +|+.+|.+... + .+.++ . +...++.++ +. ++|+||++
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~--~V~~~dr~~~~-~-~a~~~------G----v~~~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGH--TVLAYSRSDYS-D-EAQKL------G----VSYFSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcC--EEEEEECChHH-H-HHHHc------C----CeEeCCHHHHHhcCCCEEEEC
Confidence 357899999999999999999987775 89999997532 1 11111 0 123345543 44 59999999
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 433 v 433 (667)
T PLN02712 433 T 433 (667)
T ss_pred C
Confidence 6
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.054 Score=52.98 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=30.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
+..||.|+|+|.+|+.++..|+..|+ .+++|+|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDD 53 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcC
Confidence 45699999999999999999999986 58999975
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.041 Score=57.24 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh---------------------hHHHHHHHHHhhcCCCCCC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE---------------------DRCKGEMLDLQHGAPFLRS 231 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~---------------------e~l~g~~~dL~~~~~~~~~ 231 (488)
...+..||.|||+|.+|+.++..|+..|+ .+|.|+|.|. .+++..+..+.+.. ..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in---p~ 95 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN---SE 95 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC---CC
Confidence 34456799999999999999999999986 5899999863 13333344444432 23
Q ss_pred CcEEEc-CC-----c-cccCCCcEEEEec
Q psy12825 232 PKIESG-SD-----I-AMSEGSRIVIITA 253 (488)
Q Consensus 232 ~~v~~t-td-----~-eal~dADiVIita 253 (488)
.++... .+ . +.++++|+||.+.
T Consensus 96 v~i~~~~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 96 VEIVPVVTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred cEEEEEeccCCHHHHHHHhcCCCEEEEcC
Confidence 333321 11 2 3578999999985
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.13 Score=56.69 Aligned_cols=128 Identities=23% Similarity=0.385 Sum_probs=84.2
Q ss_pred CCCCCceEEEEecccchHHHHHHHHH-----cCC-----CCeEEEEeCCh----hH---HHHHHHHHhhcCCCCCCCcEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILT-----QGI-----YSNFCLIDSNE----DR---CKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~-----~~l-----~~el~L~Di~~----e~---l~g~~~dL~~~~~~~~~~~v~ 235 (488)
...+..||++.|||+.|.+++..|.. .|+ ...++++|.+- ++ +......+.+.. .
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~------~-- 388 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDH------E-- 388 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhc------c--
Confidence 33455799999999999999988776 354 25899999731 11 322333333211 1
Q ss_pred EcCCc-cccCC--CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc---hhHHHHHHHhcC
Q psy12825 236 SGSDI-AMSEG--SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV---DVLTYISWKLSG 309 (488)
Q Consensus 236 ~ttd~-eal~d--ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv---di~t~~~~k~sg 309 (488)
...++ +++++ +|++|=+.+.+ |. +-.++.+.|.++|+..+|+-.+||. .+..+-+++++.
T Consensus 389 ~~~~L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~ 454 (581)
T PLN03129 389 PGASLLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTG 454 (581)
T ss_pred cCCCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhc
Confidence 12455 67888 89888765432 21 2367788888999999999999996 566777777652
Q ss_pred CCCCcEEeecCChHH
Q psy12825 310 FPKNRVIGSGTNLDS 324 (488)
Q Consensus 310 ~p~~rViG~gt~lds 324 (488)
-+-+|++|+-.+.
T Consensus 455 --G~ai~AtGSPf~p 467 (581)
T PLN03129 455 --GRAIFASGSPFDP 467 (581)
T ss_pred --CCEEEEeCCCCCC
Confidence 1358888765543
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.045 Score=55.54 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-eal~dADiVIi 251 (488)
.+.+++.|+|||.++.++++.|+..+. .+|.++|++.++++..+.++.... . ...+... .+. +.+.++|+||.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~--~-~~~~~~~~~~~~~~~~~~~divIN 200 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAV--G-REAVVGVDARGIEDVIAAADGVVN 200 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhcc--C-cceEEecCHhHHHHHHhhcCEEEE
Confidence 345789999999999999999998775 589999999998888776664321 1 1111111 112 24668999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+..
T Consensus 201 aTp 203 (283)
T PRK14027 201 ATP 203 (283)
T ss_pred cCC
Confidence 863
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=53.42 Aligned_cols=116 Identities=14% Similarity=0.134 Sum_probs=67.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccC
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSE 244 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~ 244 (488)
+..++|||.|+|+ |.+|++++..|+.++ . +|+.+|.+.+...... .... .......++... +|. ++++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~-~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLL-EPDT-VPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhh-cccc-ccCCCCeEEEEcCCCChHHHHHHhh
Confidence 5667889999998 999999999999874 5 8999998665433211 1100 000111122211 122 3577
Q ss_pred CCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||-+++..... .....+.+..|+.-...+.+..++.. ..+|++|
T Consensus 86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~S 135 (386)
T PLN02427 86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFS 135 (386)
T ss_pred cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 899999998753211 11223445566665556666665544 3455555
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.058 Score=55.76 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=54.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
..+|+|||+|.+|...+..+....-..++.++|+++++++..+.++.+.. ..++....|++ .+. +|+|+++.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV----GCDVTVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhh-CCEEEEec
Confidence 46899999999999888877754446799999999998888777776431 23455556764 465 99999985
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.2 Score=51.71 Aligned_cols=118 Identities=11% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc-------cccC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI-------AMSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~-------eal~ 244 (488)
.++++||.|+|| |.+|++++..|+.++. +|+.+|+..........++..........++. ...|. +.++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 346789999998 9999999999999886 89999985432111111111100000001221 12342 2378
Q ss_pred CCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||-++.....+ .....+....|+.-...+.+.+++....- +|.++
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~S 140 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAA 140 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEee
Confidence 899999998653321 12334556778888888888877764333 44443
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.16 Score=54.63 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=68.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--cccCCCcEEEEe
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--eal~dADiVIit 252 (488)
+.+||.|+|+ |.+|++++..|+.++. +|+.+|......... +.+... ....++. ..|. ..+.++|+||-+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~---~~~~~~-~~~~~~i-~~D~~~~~l~~~D~ViHl 190 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKEN---VMHHFS-NPNFELI-RHDVVEPILLEVDQIYHL 190 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhh---hhhhcc-CCceEEE-ECCccChhhcCCCEEEEe
Confidence 4589999998 9999999999999886 888888643211111 111100 0111222 2342 356789999999
Q ss_pred cccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++.... ......+.+..|+.....+.+..++.. ..+|+++
T Consensus 191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S 232 (442)
T PLN02206 191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS 232 (442)
T ss_pred eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence 864321 112345667788888888888877764 2455554
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.79 Score=44.17 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=67.0
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-----------c
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-----------M 242 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-----------a 242 (488)
||.|+|+ |.+|..++..|+..|. +|++.+.+ .+.++....++..... .........| .+ .
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHG--EGVAFAAVQDVTDEAQWQALLAQAADA 76 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCC--CceEEEEEeecCCHHHHHHHHHHHHHH
Confidence 5889998 9999999999998886 89999987 6666655555543210 0001111112 11 2
Q ss_pred cCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|+||..++..... ..+ -...+..|+. ..+.+.+.+.+... ..+|+++.
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 77 MGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred cCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 35689999998754321 111 1233455655 55667777765543 44666554
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.25 Score=47.57 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEIL 50 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh
Confidence 4578999999 9999999999998886 79999999877766555554
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.11 Score=55.55 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
....+|+|+|+|.+|..++..+...|. +|+.+|+++.++.. +..+. + .+. ...++++++|+||.+.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~-A~~~G----~----~~~--~~~e~v~~aDVVI~atG 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQ-AAMEG----Y----EVM--TMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHH-HHhcC----C----EEc--cHHHHHcCCCEEEECCC
Confidence 467899999999999999888877776 78999999887653 22211 0 111 11256789999999864
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
. ..++.. ..++...+.+++++++.+
T Consensus 267 ~---------------~~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 N---------------KDIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred C---------------HHHHHH--HHHhcCCCCcEEEEeCCC
Confidence 2 122221 124445678889899865
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.23 Score=50.98 Aligned_cols=136 Identities=10% Similarity=0.126 Sum_probs=75.7
Q ss_pred cEEEEecchhHHHHH-HHHHh-hhhHHHHHHHHHHH-HhhhCC--CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEE
Q psy12825 132 KITVVGAGQVGMACT-YSILT-QTMARDAVSTVDRL-LSQVAP--SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFC 206 (488)
Q Consensus 132 ki~vvg~g~vg~~~a-~~~~~-k~la~eivlid~~~-~~e~~~--~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~ 206 (488)
.|.+-..|.-+-+.| |++.+ -.+++.+...+... .++... ......++|+|||.|.||..++..+..-|. +|+
T Consensus 72 ~i~~~~~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~--~V~ 149 (303)
T PRK06436 72 VVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM--NIY 149 (303)
T ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC--EEE
Confidence 333333454444555 43322 34566665544332 222211 135567899999999999999986644455 899
Q ss_pred EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC
Q psy12825 207 LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 207 L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
.+|++... +.. ... ..++ +.++.||+|++..... . ++-.++- .+.++...
T Consensus 150 ~~~r~~~~---------~~~------~~~-~~~l~ell~~aDiv~~~lp~t----~-------~T~~li~--~~~l~~mk 200 (303)
T PRK06436 150 AYTRSYVN---------DGI------SSI-YMEPEDIMKKSDFVLISLPLT----D-------ETRGMIN--SKMLSLFR 200 (303)
T ss_pred EECCCCcc---------cCc------ccc-cCCHHHHHhhCCEEEECCCCC----c-------hhhcCcC--HHHHhcCC
Confidence 99986321 000 001 2345 4588999999985211 0 1111221 33445556
Q ss_pred CCcEEEEEe--CCch
Q psy12825 286 PDCILLIIS--NPVD 298 (488)
Q Consensus 286 p~a~vIv~T--NPvd 298 (488)
|.+++||++ .++|
T Consensus 201 ~ga~lIN~sRG~~vd 215 (303)
T PRK06436 201 KGLAIINVARADVVD 215 (303)
T ss_pred CCeEEEECCCccccC
Confidence 789999987 4454
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.26 Score=49.67 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=64.1
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-cccCCCcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-eal~dADiV 249 (488)
.++|.|+|| |.+|+.++..|+.+|. +|+.++++.+.... ...+...........+... .| . +.++++|+|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 478999998 9999999999999887 88888876543321 1122111000011111111 12 2 347899999
Q ss_pred EEecccccCC-CcchHhhHhhhHHHHHHHHHHHhcc
Q psy12825 250 IITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 250 Iitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
|.+++..... .....+.+..|+.-...+.+.+.+.
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998643211 1122356677888888888877665
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.063 Score=55.64 Aligned_cols=100 Identities=12% Similarity=0.222 Sum_probs=70.9
Q ss_pred cEEEEecchhH---HHHHHHHHhhhhHHHHHHHHHHHHhhhCCCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEE
Q psy12825 132 KITVVGAGQVG---MACTYSILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLI 208 (488)
Q Consensus 132 ki~vvg~g~vg---~~~a~~~~~k~la~eivlid~~~~~e~~~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~ 208 (488)
.++++-++.+. .|++-++-.|-|+++ ....++|||+|..+...+..+..--...+|.+|
T Consensus 100 plal~d~~~lTa~RTaAasavAa~~LA~~------------------da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~ 161 (330)
T COG2423 100 PLALLDATRLTALRTAAASAVAAKYLARK------------------DASTLAIIGAGAQARTQLEALKAVRDIREIRVY 161 (330)
T ss_pred EEEEecCccHHHHHHHHHHHHHHHHhccC------------------CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEE
Confidence 57788888765 333344444444432 224689999999988776666554345799999
Q ss_pred eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 209 DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 209 Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|++++..+..+.++.+.. ...+....+. +++++||+|+.+.
T Consensus 162 ~r~~~~~e~~a~~l~~~~----~~~v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 162 SRDPEAAEAFAARLRKRG----GEAVGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred cCCHHHHHHHHHHHHhhc----CccceeccCHHHHhhcCCEEEEec
Confidence 999999999888887653 1246666665 6899999999884
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=52.82 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=51.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh---hHHHHHHHHHhhcCCCCCCCcEEEcC--C---c-cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE---DRCKGEMLDLQHGAPFLRSPKIESGS--D---I-AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~---e~l~g~~~dL~~~~~~~~~~~v~~tt--d---~-eal~d 245 (488)
.+.+++.|+|||.++.++++.++..+. .+|.++++++ ++++..+.++.+.. ...+.... + . +++.+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 196 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENT----DCVVTVTDLADQQAFAEALAS 196 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhcc----CceEEEechhhhhhhhhhccc
Confidence 455789999999999999998988775 5899999984 46666655554321 11122111 1 1 25678
Q ss_pred CcEEEEecc
Q psy12825 246 SRIVIITAG 254 (488)
Q Consensus 246 ADiVIitag 254 (488)
+|+||.+..
T Consensus 197 aDivINaTp 205 (288)
T PRK12749 197 ADILTNGTK 205 (288)
T ss_pred CCEEEECCC
Confidence 999999853
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.15 Score=45.90 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=28.9
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
||.|+|+|.+|+.++..|+..|. .++.|+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence 68999999999999999999997 589999864
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.27 Score=50.28 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGS 246 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dA 246 (488)
.+++++|.|+|| |.+|++++..|+..|. +|++++++.+..... .++...... ....+... +|. +.++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKI-AHLRALQEL-GDLKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHH-HHHHhcCCC-CceEEEEcCCCChHHHHHHHhcC
Confidence 355789999998 9999999999999886 787777665433211 112111100 01122211 122 347889
Q ss_pred cEEEEecccccCC-CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 247 RIVIITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 247 DiVIitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|+||-+++..... .....+++..|+.-...+.+.+.+...-..+|++|
T Consensus 82 d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S 130 (338)
T PLN00198 82 DLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS 130 (338)
T ss_pred CEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence 9999998643211 11223456778888888888877763222344443
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.12 Score=58.24 Aligned_cols=136 Identities=16% Similarity=0.268 Sum_probs=83.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiV 249 (488)
..+|.|+|.|.+|+.++..|...+. +++++|.|+++.+... +. ..++.+. +|+ +.+++||.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~~-~~--------g~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIETLR-KF--------GMKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHHHH-hc--------CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 4689999999999999999988887 8999999998776432 11 1123221 232 358899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRV 329 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~ 329 (488)
|++.. |-+.-..++..+++..|+..++.-++-..- .+.+.+ .|. +.++-- +...+.++.+
T Consensus 469 vv~~~---------------d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~-~~~L~~-~Ga--d~v~~e-~~e~sl~l~~ 528 (621)
T PRK03562 469 INAID---------------DPQTSLQLVELVKEHFPHLQIIARARDVDH-YIRLRQ-AGV--EKPERE-TFEGALKSGR 528 (621)
T ss_pred EEEeC---------------CHHHHHHHHHHHHHhCCCCeEEEEECCHHH-HHHHHH-CCC--CEEehh-hHhHHHHHHH
Confidence 99852 112223345556666788766554543322 222322 343 344322 3334455666
Q ss_pred HHHHHhCCCCCCce
Q psy12825 330 LLAQKLGLSPESVH 343 (488)
Q Consensus 330 ~lA~~Lgv~p~~V~ 343 (488)
.+-+.+|+++++++
T Consensus 529 ~~L~~lg~~~~~~~ 542 (621)
T PRK03562 529 LVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHcCCCHHHHH
Confidence 66677787775543
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.11 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.532 Sum_probs=31.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.+..||.|||+|.+|+.++..|+..|+ .+|.|+|.|
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 445799999999999999999999986 589999986
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.24 Score=54.62 Aligned_cols=173 Identities=14% Similarity=0.209 Sum_probs=101.5
Q ss_pred EEecchhHHHHHHHHHhhhhHHHHHHHHHHHHh----------hhC--CCCCCCCceEEEEecccchHHHHHHHHH----
Q psy12825 135 VVGAGQVGMACTYSILTQTMARDAVSTVDRLLS----------QVA--PSIESPDQKITVVGAGQVGMACTYSILT---- 198 (488)
Q Consensus 135 vvg~g~vg~~~a~~~~~k~la~eivlid~~~~~----------e~~--~~~~~~~~KIaIIGAG~vG~~ia~~La~---- 198 (488)
+|=--..|..-||-+|-| .-+++...++...+ ..+ .....+..||++.|||+.|.++|..|+.
T Consensus 242 ~I~~EDf~~~~af~iL~r-yr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~ 320 (563)
T PRK13529 242 LLQFEDFAQKNARRILER-YRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR 320 (563)
T ss_pred EEehhhcCCchHHHHHHH-hccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 556666666667777665 33333333321100 000 0034455799999999999999998876
Q ss_pred cCCC-----CeEEEEeCCh----h--HHHHHHHHHhhcCCCCCCCcE-EEcCCc-cccCCC--cEEEEecccccCCCcch
Q psy12825 199 QGIY-----SNFCLIDSNE----D--RCKGEMLDLQHGAPFLRSPKI-ESGSDI-AMSEGS--RIVIITAGVRSLVGETR 263 (488)
Q Consensus 199 ~~l~-----~el~L~Di~~----e--~l~g~~~dL~~~~~~~~~~~v-~~ttd~-eal~dA--DiVIitag~~~k~G~~r 263 (488)
.|+. ..++++|.+- + .+......+.+...-...... ....++ ++++++ |++|=+.+.+ |.
T Consensus 321 ~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~---g~-- 395 (563)
T PRK13529 321 EGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQP---GA-- 395 (563)
T ss_pred cCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCC---CC--
Confidence 4652 5899999731 1 132233333322100000000 012354 678888 9887665432 21
Q ss_pred HhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCCcEEeecCChHH
Q psy12825 264 LQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKNRVIGSGTNLDS 324 (488)
Q Consensus 264 ~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~rViG~gt~lds 324 (488)
+-+++.+.|.++|+..+|+-.|||.. +..+-+++++. -+.+|++|+-.+.
T Consensus 396 ---------Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~--Grai~AtGspf~p 448 (563)
T PRK13529 396 ---------FTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTD--GRALVATGSPFAP 448 (563)
T ss_pred ---------CCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhc--CCEEEEECCCCCC
Confidence 23678888999999999999999975 56666777652 2468888876553
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=57.95 Aligned_cols=135 Identities=13% Similarity=0.213 Sum_probs=82.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiV 249 (488)
..+|.|+|.|.+|+.++..|...+. +++++|.|+++.+.. .+. ..++... ++. ..+.+||.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~~-~~~--------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM--RITVLERDISAVNLM-RKY--------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC--CEEEEECCHHHHHHH-HhC--------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4689999999999999999988887 899999999877642 221 1122221 232 358899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe-CCchhHHHHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS-NPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T-NPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
|++.+ |-+.-..++..+++++|+..++.-+ |+.+ .+.+++ .|. +.|+=- |..-+..+-
T Consensus 469 v~~~~---------------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~--~~~L~~-~Ga--~~vv~e-~~es~l~l~ 527 (601)
T PRK03659 469 VITCN---------------EPEDTMKIVELCQQHFPHLHILARARGRVE--AHELLQ-AGV--TQFSRE-TFSSALELG 527 (601)
T ss_pred EEEeC---------------CHHHHHHHHHHHHHHCCCCeEEEEeCCHHH--HHHHHh-CCC--CEEEcc-HHHHHHHHH
Confidence 99852 1122234566677788887665544 5543 223333 343 234311 222233444
Q ss_pred HHHHHHhCCCCCCce
Q psy12825 329 VLLAQKLGLSPESVH 343 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~ 343 (488)
...=..+|++++++.
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 555567788876664
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.0071 Score=61.84 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=30.5
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+||+|||+|.||.++||+++.+++++|++++|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D 32 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLID 32 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 38999999999999999999999999999988
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.075 Score=56.74 Aligned_cols=66 Identities=27% Similarity=0.410 Sum_probs=47.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-c-ccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-A-MSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-e-al~dADiVI 250 (488)
|||.|+|+|.+|..++..|...+. +++++|.++++++....... ..+... ++ + + .+.++|.||
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~--~v~vid~~~~~~~~~~~~~~--------~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENN--DVTVIDTDEERLRRLQDRLD--------VRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhhcC--------EEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 589999999999999999988876 89999999987764322111 111111 11 1 2 388999999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 71 ~~~ 73 (453)
T PRK09496 71 AVT 73 (453)
T ss_pred Eec
Confidence 985
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.064 Score=53.03 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=65.0
Q ss_pred EEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccccC
Q psy12825 180 ITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSL 258 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~k 258 (488)
|.|+|| |.+|+.++..|+..+. +|+.++++++........ .. ..+......+++.++|+||.+++.+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~D~Vvh~a~~~~~ 70 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANTKWE--GY------KPWAPLAESEALEGADAVINLAGEPIA 70 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcccce--ee------ecccccchhhhcCCCCEEEECCCCCcc
Confidence 578998 9999999999998886 899999877543211100 00 001111223578899999999876543
Q ss_pred CC----cchHhhHhhhHHHHHHHHHHHhccCC
Q psy12825 259 VG----ETRLQLVDRNVKIFKDLIPKIAKGSP 286 (488)
Q Consensus 259 ~G----~~r~dll~~N~~ii~ei~~~I~~~~p 286 (488)
.+ .....+...|+...+.+.+.+.+...
T Consensus 71 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 71 DKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred cccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 22 12345567788888999999888753
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.11 Score=55.10 Aligned_cols=95 Identities=12% Similarity=0.209 Sum_probs=60.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|+|||.|.||..++..|..-|. +|+-||+.....+ ..... .+....++ +.++.||+|++..
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFDV--KLHYTDRHRLPEE-----VEQEL------GLTYHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCCchh-----hHhhc------CceecCCHHHHhhcCCEEEEcC
Confidence 567899999999999999988876565 8999998652111 11110 12223355 4689999999985
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
... .++-.++- .+.+....|.+++||++-
T Consensus 257 Plt-----------~~T~~li~--~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 257 PLH-----------PETEHLFD--ADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred CCC-----------HHHHHHhC--HHHHhcCCCCcEEEECCC
Confidence 211 11222221 233444567898998873
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.034 Score=58.38 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=47.0
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE--cCCc----cccCCCcEEEEec
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES--GSDI----AMSEGSRIVIITA 253 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~--ttd~----eal~dADiVIita 253 (488)
|.|+|+|.+|+.++..|+......+|++.|++.++++.....+.. ....... ..|. +.++++|+||.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLG-----DRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TT-----TTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccc-----cceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999999999999998887655899999999988776554411 1111111 1233 3589999999998
Q ss_pred cc
Q psy12825 254 GV 255 (488)
Q Consensus 254 g~ 255 (488)
+.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 53
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.58 Score=46.71 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=42.9
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
++||+|+|+ |.||..++..+....-..-+.++|.++++.... . ...+...+|++ .++++|+||...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~------~~~i~~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----G------ALGVAITDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----C------CCCccccCCHHHhccCCCEEEECC
Confidence 479999999 999999887776543222345588877654321 1 11233346764 466899999664
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.53 Score=45.79 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.|.+++.++.....+.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~ 56 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKG 56 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 45679999998 9999999999999887 899999998877665555543
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.38 Score=49.23 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEc--CCcc----ccC--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESG--SDIA----MSE-- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~t--td~e----al~-- 244 (488)
++.+||.|+|+ |.+|.+++..|+..+. +|+++|............+.+... .....++... +|.+ .++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 45679999998 9999999999998885 899998643211111112221110 0011111111 1222 233
Q ss_pred CCcEEEEecccccC-CC-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSL-VG-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k-~G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||.+++.... .. ......+..|+.....+++.+.+..... +|.+|
T Consensus 81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 68999999875421 11 2334567788887778888777654333 44444
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.2 Score=52.32 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCCCCeEEEEeCChhHHHH-HHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 189 GMACTYSILTQGIYSNFCLIDSNEDRCKG-EMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 189 G~~ia~~La~~~l~~el~L~Di~~e~l~g-~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|..+|..|+..|. +|+++|++++.++. ....+... .+..++|. +++++||+||++.
T Consensus 32 G~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~asd~~eaa~~ADvVIlaV 89 (342)
T PRK12557 32 GSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA-------GVKVVSDDAEAAKHGEIHILFT 89 (342)
T ss_pred HHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC-------CCEEeCCHHHHHhCCCEEEEEC
Confidence 5667778887776 89999998875432 11122211 13334454 6789999999995
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.078 Score=53.98 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=63.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiVI 250 (488)
|||.|+|| |.+|+.++..|+..|. +|+.++++.+.... +.+. ..++... +|+ ++++++|+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~~----l~~~-----~v~~v~~Dl~d~~~l~~al~g~d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKASF----LKEW-----GAELVYGDLSLPETLPPSFKGVTAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhhh----Hhhc-----CCEEEECCCCCHHHHHHHHCCCCEEE
Confidence 58999998 9999999999999886 89999987654321 1111 1122221 122 4689999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+++.... ...++...|......+.+.+++..-.- +|.+|
T Consensus 70 ~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr-~I~~S 109 (317)
T CHL00194 70 DASTSRPS---DLYNAKQIDWDGKLALIEAAKAAKIKR-FIFFS 109 (317)
T ss_pred ECCCCCCC---CccchhhhhHHHHHHHHHHHHHcCCCE-EEEec
Confidence 98643211 112233456666667777777665443 44444
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.12 Score=56.08 Aligned_cols=93 Identities=15% Similarity=0.293 Sum_probs=62.9
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|+|.|.+|..+|..+...|. +|+.+|+++.+.....+ +. .++ .++ +.++.||+||.
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~---~G------~~~---~~leell~~ADIVI~ 315 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM---EG------YQV---VTLEDVVETADIFVT 315 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh---cC------cee---ccHHHHHhcCCEEEE
Confidence 35678899999999999999998877666 89999998765422111 11 111 133 46889999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.. .++. .+.++...|.++++|++-.
T Consensus 316 atGt~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 316 ATGNK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCCcc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 85311 1222 2345555688999999855
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.071 Score=53.62 Aligned_cols=105 Identities=22% Similarity=0.238 Sum_probs=66.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiVI 250 (488)
+||.|+|+ |.+|..++..|+..+. +|+.+|++++.... +.+. ..++... +|. +.++++|+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~-----~~~~~~~D~~~~~~l~~~~~~~d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRRN----LEGL-----DVEIVEGDLRDPASLRKAVAGCRALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccccc----cccC-----CceEEEeeCCCHHHHHHHHhCCCEEE
Confidence 48999998 9999999999998886 89999987654321 1110 1111111 222 3577899999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..++...............|+.....+.+.+.+..-. .+|+.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 70 HVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred EeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 9876432222334555667877777777777765433 344444
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.45 Score=45.95 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=38.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
+++|.|+|| |.+|..++..|+.+|. +|+++|++++.++....++..
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~ 47 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRA 47 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHH
Confidence 358999998 9999999999998886 899999998877666555543
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.21 Score=50.78 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=66.2
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----ccC--CCcE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----MSE--GSRI 248 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----al~--dADi 248 (488)
|||.|+|| |.+|.+++..|+..+. +|+++|............+.+... ....+... +|.+ .++ ++|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGG--KHPTFVEGDIRNEALLTEILHDHAIDT 76 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcC--CCceEEEccCCCHHHHHHHHhcCCCCE
Confidence 58999998 9999999999998886 888888643222211112222110 01111111 2222 233 6899
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..... .....+.+..|+.....+.+.+.+..-. .+|++|
T Consensus 77 vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 123 (338)
T PRK10675 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS 123 (338)
T ss_pred EEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 99998654221 1223466778888888888888776433 344444
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.15 Score=53.96 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=77.7
Q ss_pred CcEEEEecc-hhHHHHH-HHHH-hhhhHHHHHHHHHHHH-hhhC------CCCCCCCceEEEEecccchHHHHHHHHHcC
Q psy12825 131 QKITVVGAG-QVGMACT-YSIL-TQTMARDAVSTVDRLL-SQVA------PSIESPDQKITVVGAGQVGMACTYSILTQG 200 (488)
Q Consensus 131 ~ki~vvg~g-~vg~~~a-~~~~-~k~la~eivlid~~~~-~e~~------~~~~~~~~KIaIIGAG~vG~~ia~~La~~~ 200 (488)
..|.|..+. .-..+.| |++. +-.+.+.+...++... ++.. .......++|+|||.|.||..++..+..-|
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG 222 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFN 222 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCC
Confidence 466665442 2223333 3321 2346666665554332 2211 013457789999999999999999887655
Q ss_pred CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHH
Q psy12825 201 IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIP 279 (488)
Q Consensus 201 l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~ 279 (488)
. +|+.||......+. . .+. .+....++ +.+++||+|++... .. ..+-.++- .+
T Consensus 223 ~--~V~~~d~~~~~~~~-~---~~~-------g~~~~~~l~ell~~sDvV~l~lP-----lt------~~T~~li~--~~ 276 (386)
T PLN03139 223 C--NLLYHDRLKMDPEL-E---KET-------GAKFEEDLDAMLPKCDVVVINTP-----LT------EKTRGMFN--KE 276 (386)
T ss_pred C--EEEEECCCCcchhh-H---hhc-------CceecCCHHHHHhhCCEEEEeCC-----CC------HHHHHHhC--HH
Confidence 5 89999986422211 1 010 11223356 45789999999852 11 11222221 23
Q ss_pred HHhccCCCcEEEEEeC
Q psy12825 280 KIAKGSPDCILLIISN 295 (488)
Q Consensus 280 ~I~~~~p~a~vIv~TN 295 (488)
.+....|.+++||.+-
T Consensus 277 ~l~~mk~ga~lIN~aR 292 (386)
T PLN03139 277 RIAKMKKGVLIVNNAR 292 (386)
T ss_pred HHhhCCCCeEEEECCC
Confidence 4555568898888873
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.12 Score=55.56 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=60.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|+|+|+|.+|..++..+...|. +|+.+|+++.++....++ . ..+ .+. ++++++|+||.+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~~---G------~~v---~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAMD---G------FRV---MTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHhc---C------CEe---cCHHHHHhCCCEEEECC
Confidence 467899999999999999998877776 899999998765332211 1 111 123 5678999999875
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
| |-.++. ...+....+.+++++++-+
T Consensus 276 G---------------~~~vI~--~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 276 G---------------NKDVIT--AEHMEAMKDGAILANIGHF 301 (425)
T ss_pred C---------------CHHHHH--HHHHhcCCCCCEEEEcCCC
Confidence 3 222332 1234444567888888754
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.097 Score=56.65 Aligned_cols=92 Identities=15% Similarity=0.291 Sum_probs=61.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|+|+|.|.+|..++..+...|. +|+.+|+++.++....+ +. + .+. +. ++++++|+||.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~---~G--~----~vv---~leEal~~ADVVI~tT 317 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM---EG--Y----QVL---TLEDVVSEADIFVTTT 317 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh---cC--C----eec---cHHHHHhhCCEEEECC
Confidence 467899999999999999998876665 79999998865432111 11 1 111 23 4688999999875
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+. ..++. ...+....+.++++|++-+.
T Consensus 318 Gt---------------~~vI~--~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 318 GN---------------KDIIM--VDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred CC---------------ccchH--HHHHhcCCCCCEEEEcCCCC
Confidence 31 11221 33445556789999999864
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.098 Score=55.11 Aligned_cols=75 Identities=15% Similarity=0.333 Sum_probs=50.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC-------------------hhHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN-------------------EDRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~-------------------~e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|.|+|.+ ..+++..+..+.+.. +..++.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~v~ 208 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN---PDVQVE 208 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC---CCCEEE
Confidence 456799999999999999999999996 589999986 234444444454432 223332
Q ss_pred EcCC------c-cccCCCcEEEEec
Q psy12825 236 SGSD------I-AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~ttd------~-eal~dADiVIita 253 (488)
.... . +-++++|+||.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~D~Vv~~~ 233 (376)
T PRK08762 209 AVQERVTSDNVEALLQDVDVVVDGA 233 (376)
T ss_pred EEeccCChHHHHHHHhCCCEEEECC
Confidence 2211 1 2367899988885
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.56 Score=46.30 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=66.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------------cc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------------AM 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------------ea 242 (488)
+++.|+|+ |.+|..++..|+..|. +|++++++++.++....++..... ........|. +.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGG---TVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC---CcceEEEeeCCCHHHHHHHHHHHHHh
Confidence 47899998 9999999999998886 799999988877666556543211 1111111121 12
Q ss_pred cCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 SEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+...|+||.++|..... ..+. ...+..|+. +.+.+...+.+....+.+|+++-.
T Consensus 76 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~ 139 (272)
T PRK07832 76 HGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA 139 (272)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence 45689999998764221 1122 223444444 334444444433334566666543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=62.99 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+..||++||.|.||..++..|+..|+ +|..||+++++.+... ..- .....++ +..++||+||++.
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~~l~----~~G-------a~~~~s~~e~a~~advVi~~l 68 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF--KVQAFEISTPLMEKFC----ELG-------GHRCDSPAEAAKDAAALVVVL 68 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHH----HcC-------CeecCCHHHHHhcCCEEEEEc
Confidence 35689999999999999999999987 8999999987766432 211 1123455 5678899999986
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.29 Score=53.95 Aligned_cols=133 Identities=19% Similarity=0.319 Sum_probs=85.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHH----cCC-----CCeEEEEeCCh----hH---HHHHHHHHhhcCCCCCCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILT----QGI-----YSNFCLIDSNE----DR---CKGEMLDLQHGAPFLRSPKIES 236 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~----~~l-----~~el~L~Di~~----e~---l~g~~~dL~~~~~~~~~~~v~~ 236 (488)
...+..||++.|||+.|.++|..|.. .|+ ...++++|..- ++ +......+.+.. .......
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~~~ 369 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTD---ISAEDSS 369 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccc---ccccccc
Confidence 33455799999999999999988764 455 25899999631 11 222333333221 0011001
Q ss_pred cCCc-cccCCC--cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc---hhHHHHHHHhcCC
Q psy12825 237 GSDI-AMSEGS--RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV---DVLTYISWKLSGF 310 (488)
Q Consensus 237 ttd~-eal~dA--DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv---di~t~~~~k~sg~ 310 (488)
..++ ++++++ |++|=+.+.+ |. +-+++.+.|.++|+..+|+=.|||. .+..+-+++++.
T Consensus 370 ~~~L~e~v~~~KPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~- 434 (559)
T PTZ00317 370 LKTLEDVVRFVKPTALLGLSGVG---GV-----------FTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTN- 434 (559)
T ss_pred CCCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhcc-
Confidence 2455 678888 9888665433 21 2367888999999999999999997 566777777652
Q ss_pred CCCcEEeecCChHH
Q psy12825 311 PKNRVIGSGTNLDS 324 (488)
Q Consensus 311 p~~rViG~gt~lds 324 (488)
-+-+|++|.-.+.
T Consensus 435 -Grai~AtGspf~p 447 (559)
T PTZ00317 435 -GRAIVASGSPFPP 447 (559)
T ss_pred -CCEEEEECCCCCC
Confidence 1358888876554
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.58 Score=45.47 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=51.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc---------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA--------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e--------- 241 (488)
.++.++|.|+|+ |.+|..++..|+.+|. +|++++++++.++....++.+. ...+... +|.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAATAARLPGA-----KVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC-----ceEEEEccCCCHHHHHHHHHHH
Confidence 456789999999 9999999999998887 7999999877665443333221 0011111 1211
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+.+.|+||..++..
T Consensus 81 ~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 81 VERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 135789999998764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.32 Score=50.58 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=60.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---cccCC-CcE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---AMSEG-SRI 248 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---eal~d-ADi 248 (488)
+..+..+|+|+|+|.+|..-++.+...+ -+|+.+|+++++++ .+.+|-. ..+..+.|. +++++ +|+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e-~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLE-LAKKLGA-------DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHH-HHHHhCC-------cEEEEcCCchhhHHhHhhCcE
Confidence 5567789999999988865444433356 49999999998776 3444421 112222232 33333 999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
||.+++ + ..+-..++-..+.+.++.+++|.
T Consensus 233 ii~tv~-~------------------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDTVG-P------------------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEECCC-h------------------hhHHHHHHHHhcCCEEEEECCCC
Confidence 999974 2 12223334445688899999994
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.15 Score=52.60 Aligned_cols=114 Identities=17% Similarity=0.095 Sum_probs=68.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----ccC--CC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----MSE--GS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----al~--dA 246 (488)
+.++|.|+|+ |.+|++++..|+..|. +|+.+|++..........+... ........ +|.+ .++ +.
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLA----KKIEDHFGDIRDAAKLRKAIAEFKP 76 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhc----CCceEEEccCCCHHHHHHHHhhcCC
Confidence 4578999998 9999999999999886 8899998665433222122110 01111111 1222 244 35
Q ss_pred cEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 247 RIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 247 DiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
|+||.+++.+... .......+..|+.....+.+.+.+.+.-..+|++|.
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 77 EIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999998753221 112345567788777778887776542234666554
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.69 Score=45.24 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=51.5
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-----------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-----------M 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-----------a 242 (488)
|+|.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.+.. .... ...| .+ .
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~-~~~Dv~d~~~~~~~~~~~~~~ 73 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG----EVYA-VKADLSDKDDLKNLVKEAWEL 73 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CceE-EEcCCCCHHHHHHHHHHHHHh
Confidence 58999998 9999999999999987 89999999887776666665321 1111 1122 11 2
Q ss_pred cCCCcEEEEecccc
Q psy12825 243 SEGSRIVIITAGVR 256 (488)
Q Consensus 243 l~dADiVIitag~~ 256 (488)
+..-|++|.++|..
T Consensus 74 ~g~id~li~naG~~ 87 (259)
T PRK08340 74 LGGIDALVWNAGNV 87 (259)
T ss_pred cCCCCEEEECCCCC
Confidence 35789999998864
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.57 Score=45.54 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=67.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc--------------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI--------------A 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~--------------e 241 (488)
+++.|+|+ |.+|..++..|+..|. +|+++|.+.+.++....++.+.. .++. ...|. +
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG-----GKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57888898 9999999999998886 89999998877776666665421 1111 11221 1
Q ss_pred ccCCCcEEEEecccccC-CC--cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 MSEGSRIVIITAGVRSL-VG--ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 al~dADiVIitag~~~k-~G--~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+.+.|+||.++|.... +. .+. ...+..|+. +.+.+.+.+.+..+++.+++++-.
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 76 TFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 23468999999876421 11 111 122344443 234444444444445667776643
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.092 Score=49.32 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|||.|.+|..+|..+..-|. +|+.||+...... ...+. .+.. .++ +.++.||+|++
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~----~~~~~-------~~~~-~~l~ell~~aDiv~~ 97 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM--RVIGYDRSPKPEE----GADEF-------GVEY-VSLDELLAQADIVSL 97 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHH----HHHHT-------TEEE-SSHHHHHHH-SEEEE
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc--eeEEecccCChhh----hcccc-------ccee-eehhhhcchhhhhhh
Confidence 55678999999999999999998875565 9999999875333 11111 1222 355 46889999999
Q ss_pred eccc-ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 252 TAGV-RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 252 tag~-~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+... +...++ + | .+.+....|.+++||++--
T Consensus 98 ~~plt~~T~~l-----i--~-------~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 98 HLPLTPETRGL-----I--N-------AEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp -SSSSTTTTTS-----B--S-------HHHHHTSTTTEEEEESSSG
T ss_pred hhcccccccee-----e--e-------eeeeeccccceEEEeccch
Confidence 8632 111111 1 1 2233445578888988754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.19 Score=51.03 Aligned_cols=119 Identities=20% Similarity=0.283 Sum_probs=85.8
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c-------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I------- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~------- 240 (488)
+.+..+.|+|.|| ..+|.++|+.++..|. .++|+-...++++....++..... .. ++. ...| .
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~--~~-~v~~~~~Dvs~~~~~~~~~ 82 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGS--LE-KVLVLQLDVSDEESVKKFV 82 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCC--cC-ccEEEeCccCCHHHHHHHH
Confidence 4456778889999 8899999999999997 789999999999988788887643 22 222 1122 1
Q ss_pred ----cccCCCcEEEEecccccCCCc-c------hHhhHhhh----HHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 241 ----AMSEGSRIVIITAGVRSLVGE-T------RLQLVDRN----VKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 241 ----eal~dADiVIitag~~~k~G~-~------r~dll~~N----~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
..+.+.|+.|..+|..+ .+. + ....+..| +-.-+...+.|.+.+ ++.|++++...+
T Consensus 83 ~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG 153 (282)
T KOG1205|consen 83 EWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG 153 (282)
T ss_pred HHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence 24779999999999876 321 1 12233344 456788888888887 788888876665
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.25 Score=53.24 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=50.5
Q ss_pred CCCceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||.|+|.|..|.+ +|..|...|. +|...|.+.... ..+|... ...+....+.+.+.++|+||.+.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~--~V~~~D~~~~~~---~~~l~~~-----gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGY--KVSGSDLKESAV---TQRLLEL-----GAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCC--eEEEECCCCChH---HHHHHHC-----CCEEeCCCCHHHCCCCCEEEECC
Confidence 35578999999999999 6888888887 899999865421 2234331 11222222345678999999998
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
+++.
T Consensus 75 gi~~ 78 (461)
T PRK00421 75 AIPD 78 (461)
T ss_pred CCCC
Confidence 8764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.48 Score=46.53 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea------- 242 (488)
++.+++.|+|+ |.+|.+++..|+..|. +|+++|++++.++....++.... .++. ...| .+.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG-----RRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 45678999998 8899999999998887 89999999887766665554321 1121 1122 221
Q ss_pred ----cCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|+||..++..... ..+ -.+.+..|.. +.+...+.+.+..+.+.+++++.
T Consensus 81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 81 AVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 24689999998753221 111 1223444443 33444444444444566666664
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.031 Score=49.11 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=43.4
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCCcEEEEec
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGSRIVIITA 253 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dADiVIita 253 (488)
||+|||| |.+|..+...|.......-+.+++.....-. ...+..... .....+... .+.+.+.++|+||.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGK-PLSEVFPHP--KGFEDLSVEDADPEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTS-BHHHTTGGG--TTTEEEBEEETSGHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCC-eeehhcccc--ccccceeEeecchhHhhcCCEEEecC
Confidence 7999997 9999999988888655545666776551111 111121110 011222222 3567899999999995
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.47 Score=45.80 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=51.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.+... . ......| .+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~---~-~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADGG---T-AIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC---c-EEEEEcCCCCHHHHHHHHHHH
Confidence 34578999999 9999999999999886 899999987766555555543210 0 0111122 21
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+...|+||.+++..
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 78 VSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHhCCCCEEEECCCCc
Confidence 124689999999864
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.56 Score=44.88 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=38.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
..++|.|+|| |.+|..++..|+..+. +|++++++++++.....++.
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHh
Confidence 3568999998 9999999999998876 79999999887766555554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.56 Score=45.12 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=53.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++.+++.++....++.... ....+ ...| .+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG---GRAHA-IAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEccCCCHHHHHHHHHHH
Confidence 45688999998 9999999999998886 89999998887776666664321 11111 1122 21
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+.+.|+||.+++..
T Consensus 79 ~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 79 AAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 125789999998764
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.16 Score=54.20 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
...++|+|+|+|.+|..++..+...|. +|+.+|+++.+.....+ +. ..+. .-.++++++|+||.+.|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~~---~G------~~v~--~leeal~~aDVVItaTG 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA--RVIVTEVDPIRALEAAM---DG------FRVM--TMEEAAKIGDIFITATG 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHHh---cC------CEeC--CHHHHHhcCCEEEECCC
Confidence 567899999999999999998876665 89999998865432221 11 1111 11246889999988753
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
|..++.. ..+....+.+++++++-.
T Consensus 260 ---------------~~~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 ---------------NKDVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred ---------------CHHHHHH--HHHhcCCCCcEEEEECCC
Confidence 2233331 233344567888888754
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.36 Score=47.13 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM------- 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea------- 242 (488)
.++.++|.|+|+ |.+|..++..|+..|. +|+++|.+.+.++....++.... ....+ ...| .++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~---~~~~~-~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG---IDALW-IAADVADEADIERLAEE 82 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEE-EEccCCCHHHHHHHHHH
Confidence 345678999998 9999999999998887 89999998877765555554321 01111 1222 222
Q ss_pred ----cCCCcEEEEecccccCCC---cc---hHhhHhhhHHHHHHHHHHHhcc----CCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKIFKDLIPKIAKG----SPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~G---~~---r~dll~~N~~ii~ei~~~I~~~----~p~a~vIv~TN 295 (488)
+...|.||.+++...... .+ -.+.+..|+.-...+.+.+.++ .+...+++++.
T Consensus 83 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 83 TLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 246799999987532111 11 1233456655444445444332 23345666654
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.15 Score=53.66 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=41.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..++|+|||. |.||..++..|-.. ...+|+-+|++++ ..+++ +.+++||+||+++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~d~----------------------~~~~~~~~v~~aDlVilav 59 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPADP----------------------GSLDPATLLQRADVLIFSA 59 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCCcc----------------------ccCCHHHHhcCCCEEEEeC
Confidence 4579999999 99999999998765 2448888997411 01233 4688999999996
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.5 Score=48.87 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH--HHHHHhhcCCCCCCCcEEEc--CCc----cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG--EMLDLQHGAPFLRSPKIESG--SDI----AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g--~~~dL~~~~~~~~~~~v~~t--td~----eal~dA 246 (488)
..++|+|.|| |.+|+.++..|+.+|+ +|+=-=++++..+. +..+|...- ...++... .|+ +++++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~---~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK---ERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc---ccceEEeccccccchHHHHHhCC
Confidence 5679999999 9999999999999998 44444333333222 344554321 11222221 133 589999
Q ss_pred cEEEEecccccCCCc-chHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 247 RIVIITAGVRSLVGE-TRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 247 DiVIitag~~~k~G~-~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
|.|+=++....-... ...+++.-.++-...+.+.+.++. ...=+++|.-..
T Consensus 80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a 131 (327)
T KOG1502|consen 80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA 131 (327)
T ss_pred CEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence 999999853221111 244667777777788888888876 455577776543
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.31 Score=49.22 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=32.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
...+..+|+|+|+|.+|+.++..|+..|+ .+|.|+|-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 44466799999999999999999999986 489999864
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.19 Score=53.59 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=49.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c--cccCCCc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I--AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~--eal~dAD 247 (488)
..+++|.|+|+|.+|..++..|...+. +++++|.++++.+.......+ ..+... ++ + ..+++||
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~--~v~vid~~~~~~~~~~~~~~~-------~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY--SVKLIERDPERAEELAEELPN-------TLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHCCC-------CeEEECCCCCHHHHHhcCCccCC
Confidence 457899999999999999998887776 899999999876543322211 112211 12 2 3578999
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
.||.+.
T Consensus 300 ~vi~~~ 305 (453)
T PRK09496 300 AFIALT 305 (453)
T ss_pred EEEECC
Confidence 998874
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.66 Score=46.77 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=53.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e--------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++.+.++....++.... ....+ ...|. +
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~-~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG---GDAMA-VPCDLSDLDAVDALVADV 111 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEE-EEccCCCHHHHHHHHHHH
Confidence 34578999998 9999999999999886 89999999888876666654321 01111 11221 1
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 112 ~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 112 EKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 234789999998864
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.72 Score=44.85 Aligned_cols=114 Identities=13% Similarity=0.199 Sum_probs=66.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
++.++|.|+|+ |.+|..++..|+..+. + |+++|++.+.+.....++... ..++. ...| ++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL-----GAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHH
Confidence 45678999999 9999999999998876 5 999999877665544444221 11221 1112 21
Q ss_pred ----ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.+.|+||.+++..... ..+.. ..+..|+. +++...+.+.+....+.+++++.
T Consensus 77 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 77 AADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 124689999998865321 11222 22344443 33444455544433455666654
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.58 Score=47.43 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=66.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiV 249 (488)
.++|.|+|+ |.+|++++..|+..|. +|++++++.+..... ..+...........+... +|. +.++++|+|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 578999998 9999999999999887 788887766544322 111111000001111111 122 246789999
Q ss_pred EEecccccCC-C-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLV-G-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~-G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++..... . ......+..|+.-...+.+.+.++..-..+|++|
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 9998753211 1 1223456677777777777766653222344443
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.11 Score=56.69 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=50.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+++.|+|+|.+|.+++..|+..|. +|.++|++.++++.....+.. ......+..++.++|+||++.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~--~V~i~~R~~~~~~~la~~~~~--------~~~~~~~~~~l~~~DiVInat 398 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA--ELLIFNRTKAHAEALASRCQG--------KAFPLESLPELHRIDIIINCL 398 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc--------ceechhHhcccCCCCEEEEcC
Confidence 356789999999999999999998886 899999988777654433211 111112334578999999996
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.1 Score=63.60 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=50.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..++|++||.|.||..++..|+..|+ +|..||+++++++.. .+.. . ....++ +.+++||+||++..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~l----~~~G------a-~~~~s~~e~~~~aDvVi~~V~ 389 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNF--SVCGYDVYKPTLVRF----ENAG------G-LAGNSPAEVAKDVDVLVIMVA 389 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH----HHcC------C-eecCCHHHHHhcCCEEEEecC
Confidence 45789999999999999999999987 899999998776542 2211 1 113355 56889999999974
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.052 Score=57.17 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=50.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cC---Cc-cccCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GS---DI-AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-tt---d~-eal~dADiV 249 (488)
.++.||+|+|+|.+|...+..+...|. +|..+|+++++++.....+.. .+.. .. ++ +.++++|+|
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHHHHHHHccCCEE
Confidence 467889999999999999888887776 799999998876543322211 1111 11 22 457899999
Q ss_pred EEecccc
Q psy12825 250 IITAGVR 256 (488)
Q Consensus 250 Iitag~~ 256 (488)
|.++..+
T Consensus 235 I~a~~~~ 241 (370)
T TIGR00518 235 IGAVLIP 241 (370)
T ss_pred EEccccC
Confidence 9997543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.35 Score=52.53 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
....+||.|+|+|..|.+++..|...|. +|..+|.+...... .+... ..++....+ .+.+.++|+||.+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~---~l~~~-----gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNETARHK---LIEVT-----GVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChHHHHH---HHHhc-----CcEEEeCCCchhHhcCCCEEEeC
Confidence 3455789999999999999999988887 89999976543211 11211 112322222 3457899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHh-----ccCCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIA-----KGSPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~-----~~~p~a~vIv~TNPvd 298 (488)
.+++... .........+++++.++.-... .+.....+|-+|-..+
T Consensus 82 pgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnG 131 (473)
T PRK00141 82 PGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNG 131 (473)
T ss_pred CCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCc
Confidence 8876432 1222223455666655553322 1221223666665544
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.21 Score=51.58 Aligned_cols=108 Identities=22% Similarity=0.215 Sum_probs=67.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH-HHHHhhcCCCCCCCcEEEcCC------c-cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE-MLDLQHGAPFLRSPKIESGSD------I-AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~-~~dL~~~~~~~~~~~v~~ttd------~-eal~dA 246 (488)
++++|.|+|+ |.+|++++..|+.+|. +|+.++++.+..... ...+... .....+. ..| + ++++++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~-~~Dl~d~~~~~~~~~~~ 82 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG---KERLILC-KADLQDYEALKAAIDGC 82 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC---CCcEEEE-ecCcCChHHHHHHHhcC
Confidence 4578999999 9999999999999886 888888865543211 1122110 0011111 122 2 357899
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII 293 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~ 293 (488)
|+||.+++... ....+.+..|+.-...+.+.+.+..... +|++
T Consensus 83 d~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r-~V~~ 125 (342)
T PLN02214 83 DGVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKR-VVIT 125 (342)
T ss_pred CEEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEe
Confidence 99999987432 2234556778887777887777664333 4443
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.51 Score=45.63 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~ 49 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQ 49 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 34578999998 9999999999998886 89999999887776666664
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.19 Score=51.21 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
++..+|.|+|+|.+|..++..|+..|+ .+|.|+|.+. .+++.....|... .+..+|.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL---Np~V~V~ 92 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL---NPYVPVT 92 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH---CCCCEEE
Confidence 345699999999999999999999997 5899999632 2233333333332 2234554
Q ss_pred EcC---CccccCCCcEEEEec
Q psy12825 236 SGS---DIAMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt---d~eal~dADiVIita 253 (488)
..+ +.+-+.+.|+||.+.
T Consensus 93 ~~~~~~~~~~l~~fdvVV~~~ 113 (286)
T cd01491 93 VSTGPLTTDELLKFQVVVLTD 113 (286)
T ss_pred EEeccCCHHHHhcCCEEEEec
Confidence 432 235689999998885
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.86 Score=44.38 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=68.4
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----------- 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----------- 241 (488)
++|.|+|+ |.+|.+++..|+..+. +|+++|.+.+.++....++.... . ..++. ...| .+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEY--G-EGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhc--C-CceeEEEEccCCCHHHHHHHHHHHHH
Confidence 46899998 9999999999999886 89999998877765555554321 0 01111 1112 11
Q ss_pred ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|+||.+++.+... ..... ..+..|+. +.+.+.+.+.+..+++.+|+++..
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~ 142 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK 142 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 124679999998765321 11222 22344443 355666666555444567776654
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.12 Score=52.48 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=82.9
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-CCCCCCcEE------EcCC--ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-PFLRSPKIE------SGSD--IAM 242 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-~~~~~~~v~------~ttd--~ea 242 (488)
.+.+...|.|.|+ +.+|..+|+.++..+- .++|+|+|.+-.+..+..+++.- .+.-.+.++ ...+ .++
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHh
Confidence 5667778899998 6778889999999886 89999999987777777777531 000011111 1111 146
Q ss_pred cCCCcEEEEecccc-cCCCc--chHhh---Hhhh----HHHHHHHHHHHhccCCCcEEEEEe------CCchhHHHHHHH
Q psy12825 243 SEGSRIVIITAGVR-SLVGE--TRLQL---VDRN----VKIFKDLIPKIAKGSPDCILLIIS------NPVDVLTYISWK 306 (488)
Q Consensus 243 l~dADiVIitag~~-~k~G~--~r~dl---l~~N----~~ii~ei~~~I~~~~p~a~vIv~T------NPvdi~t~~~~k 306 (488)
..+.|++|..||+. .++.. ++.++ +.-| .-+.+.+...|.+.+. +.|+.++ -|.....|-..|
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~-GHIV~IaS~aG~~g~~gl~~YcaSK 190 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNN-GHIVTIASVAGLFGPAGLADYCASK 190 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCC-ceEEEehhhhcccCCccchhhhhhH
Confidence 78999999999864 34332 33221 2333 3467888899888654 4455543 334455555544
Q ss_pred h
Q psy12825 307 L 307 (488)
Q Consensus 307 ~ 307 (488)
+
T Consensus 191 ~ 191 (300)
T KOG1201|consen 191 F 191 (300)
T ss_pred H
Confidence 3
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.28 Score=48.56 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=92.0
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cccC
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AMSE 244 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------eal~ 244 (488)
.+-|.|.|| +.+|..+|..|+..|. .|+|..++.++|+.++.++.+.........| +|+ +.+.
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DV---tD~~~~~~~i~~~~~~~g 80 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDV---TDRAAVEAAIEALPEEFG 80 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeecc---CCHHHHHHHHHHHHHhhC
Confidence 345677799 8889999999999998 9999999999999999988841100111111 222 4577
Q ss_pred CCcEEEEecccccCCC------cchHhhHhhhHHHH----HHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCc
Q psy12825 245 GSRIVIITAGVRSLVG------ETRLQLVDRNVKIF----KDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNR 314 (488)
Q Consensus 245 dADiVIitag~~~k~G------~~r~dll~~N~~ii----~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~r 314 (488)
+.|++|..+|.....- .+-..++..|+.-+ +.+...|.+. ..+.|||.+--... ..||-..
T Consensus 81 ~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~--------~~y~~~~ 151 (246)
T COG4221 81 RIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGR--------YPYPGGA 151 (246)
T ss_pred cccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEecccccc--------ccCCCCc
Confidence 8999999998754311 12345677887744 4444444443 34578877643321 1245555
Q ss_pred EEeecCChHHHHHHHHHHHHhCCC--CCCceeEEE
Q psy12825 315 VIGSGTNLDSMRFRVLLAQKLGLS--PESVHGFII 347 (488)
Q Consensus 315 ViG~gt~lds~R~~~~lA~~Lgv~--p~~V~~~V~ 347 (488)
+++- | --+.+.+++-|..+ ...|++..|
T Consensus 152 vY~A-T----K~aV~~fs~~LR~e~~g~~IRVt~I 181 (246)
T COG4221 152 VYGA-T----KAAVRAFSLGLRQELAGTGIRVTVI 181 (246)
T ss_pred cchh-h----HHHHHHHHHHHHHHhcCCCeeEEEe
Confidence 5533 2 22344444444332 355665444
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.11 Score=50.76 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=35.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+++.|+|| |.+|..++..|+..|. +|+++|++.+.++....++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 45 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAEL 45 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHh
Confidence 57999998 9999999999999886 8999999887766554443
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.96 Score=43.55 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=38.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
+.++|.|+|| |.+|..++..|+..+. +|+++|.+.+..+....++..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~ 49 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRA 49 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh
Confidence 4578999998 9999999999999887 899999988777666555543
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.78 Score=45.71 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=68.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|++.|.+++.++....++.... .++. ...|. +
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG-----FDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEeCCCCCHHHHHHHHHH
Confidence 45567899998 9999999999999887 89999999887776666664321 1111 11221 1
Q ss_pred ---ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+..|+. ..+.+...+.+....+.+|+++.
T Consensus 77 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 123579999999864211 1122 223444543 34445555544433455666653
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.061 Score=56.34 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=50.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|.|+|.+. .+++..+..|.... +..++.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n---p~v~v~ 101 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN---PDVKVT 101 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC---CCcEEE
Confidence 345699999999999999999999987 4899999743 23333444444332 233444
Q ss_pred EcC-C------ccccCCCcEEEEec
Q psy12825 236 SGS-D------IAMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt-d------~eal~dADiVIita 253 (488)
... . .+-++++|+||.+.
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~ 126 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGS 126 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECC
Confidence 321 1 13478999999985
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.54 Score=47.39 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=68.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++++.+.++....++.... . ..++. ...|. +
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~~Dl~d~~~v~~~~~~ 88 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAAT--P-GADVTLQELDLTSLASVRAAADA 88 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--C-CCceEEEECCCCCHHHHHHHHHH
Confidence 34578999998 9999999999999886 89999998877765555554321 0 11221 12232 1
Q ss_pred ---ccCCCcEEEEecccccCCC-cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG-ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G-~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|+||.++|....+. .+ -...+..|.. +.+.+.+.+.+.. .+.+|+++-
T Consensus 89 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS 152 (306)
T PRK06197 89 LRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS 152 (306)
T ss_pred HHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 1346899999988642211 11 1222344433 3555666665543 345666653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.83 Score=44.08 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=52.0
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----------
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A---------- 241 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e---------- 241 (488)
.+++.|+|+ |.+|..++..|+..+. +|++.++++++++....++.... ...++. ...|. +
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 76 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARY---PGIKVAVAALDVNDHDQVFEVFAEFR 76 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhC---CCceEEEEEcCCCCHHHHHHHHHHHH
Confidence 357899998 9999999999998885 89999999887776666654321 111221 11222 1
Q ss_pred -ccCCCcEEEEecccc
Q psy12825 242 -MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 -al~dADiVIitag~~ 256 (488)
.+...|+||..+|..
T Consensus 77 ~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 77 DELGGLDRVIVNAGIG 92 (248)
T ss_pred HHcCCCCEEEECCCcC
Confidence 234689999998864
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.53 Score=47.76 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=58.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
..|||.|+|+ |.+|++++..|+..|. +|++...+....+....++.+ .+.|+||-+++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~~l~~-------------------~~~D~ViH~Aa 66 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEADIDA-------------------VKPTHVFNAAG 66 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHHHHHh-------------------cCCCEEEECCc
Confidence 4579999998 9999999999998886 666543322222222222221 26799999887
Q ss_pred cccCCC-----cchHhhHhhhHHHHHHHHHHHhccC
Q psy12825 255 VRSLVG-----ETRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 255 ~~~k~G-----~~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
....+. ....+.+..|+.....+++..++..
T Consensus 67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g 102 (298)
T PLN02778 67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG 102 (298)
T ss_pred ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 543221 2345567788887778888877764
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.55 Score=51.84 Aligned_cols=116 Identities=12% Similarity=0.202 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...++.. .++.... .....++|+|||.|.+|..+|..+..-|. +|+.||....... ..++
T Consensus 110 L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~---- 181 (526)
T PRK13581 110 LALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGM--KVIAYDPYISPER--AAQL---- 181 (526)
T ss_pred HHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhH--HHhc----
Confidence 45777776666432 1222110 23567899999999999999998876565 8999998542111 1111
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+... ++ +.++.||+|+++..... .+..++- .+.+....|.+++||++-
T Consensus 182 ------g~~~~-~l~ell~~aDiV~l~lP~t~-----------~t~~li~--~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 182 ------GVELV-SLDELLARADFITLHTPLTP-----------ETRGLIG--AEELAKMKPGVRIINCAR 231 (526)
T ss_pred ------CCEEE-cHHHHHhhCCEEEEccCCCh-----------HhhcCcC--HHHHhcCCCCeEEEECCC
Confidence 11222 45 56899999999863110 1111221 233444567888888874
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.39 Score=47.70 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=31.5
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
..+..||+|||+|.+|+.++..|+..|+ .+|.|+|-
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~ 64 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDF 64 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcC
Confidence 3456799999999999999999999986 58999986
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.79 Score=44.58 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=52.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.+++.+.++....++.+.. .++. ...| .+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG-----GKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC-----CeEEEEEccCCCHHHHHHHHHH
Confidence 34568999998 9999999999999887 89999999888776666665321 1111 1112 11
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|.+++..
T Consensus 80 ~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 80 VTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 234789999998764
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.8 Score=44.70 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=50.1
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c-----------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A-----------M 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e-----------a 242 (488)
++|.|+|+ |.+|..++..|+..+. +|+++|++++..+....++.... ....+ ...|. + .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~-~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG---GEALV-VPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEccCCCHHHHHHHHHHHHHH
Confidence 57999999 9999999999998886 89999998877665555554321 11111 22232 1 1
Q ss_pred cCCCcEEEEecccc
Q psy12825 243 SEGSRIVIITAGVR 256 (488)
Q Consensus 243 l~dADiVIitag~~ 256 (488)
+.+.|+||.+++..
T Consensus 76 ~~~id~vi~~ag~~ 89 (263)
T PRK06181 76 FGGIDILVNNAGIT 89 (263)
T ss_pred cCCCCEEEECCCcc
Confidence 23689999998754
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.62 Score=47.83 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=40.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
.+.+.|+|| |.+|..++..|+..|. +|+++++++++++....++..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHH
Confidence 467889999 9999999999999987 899999999998887777764
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.28 Score=53.87 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc-CCCCC-CCc------E-EEcCCc---
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG-APFLR-SPK------I-ESGSDI--- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~-~~~~~-~~~------v-~~ttd~--- 240 (488)
...++.||+|+|+|.+|...+..+...|- +|+.+|+++++++ .+..+... ..... ... . ..+.++
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence 34568899999999999887776666665 7999999998887 44444321 00000 000 0 011221
Q ss_pred ------cccCCCcEEEEecccccCCCcchHhhHhhhHHH-HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 241 ------AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKI-FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 241 ------eal~dADiVIitag~~~k~G~~r~dll~~N~~i-i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.++++|+||.+++.|.++-. .. .++.. +...|.+.|+.++-+
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v---~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMV---ASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHH---HhcCCCCEEEEEccC
Confidence 124689999999987643211 12 13333 333477888877764
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.27 Score=50.72 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=49.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----cccCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMSEG 245 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal~d 245 (488)
+...++|.|+|+ |.+|++++..|+..|. +|++++.+.+.......++.. .....+. ..| . +.+++
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~-~~Dl~~~~~~~~~~~~ 79 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE----GDRLRLF-RADLQEEGSFDEAVKG 79 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc----CCeEEEE-ECCCCCHHHHHHHHcC
Confidence 345679999998 9999999999999886 888888776544332222211 0111121 123 2 34678
Q ss_pred CcEEEEecccc
Q psy12825 246 SRIVIITAGVR 256 (488)
Q Consensus 246 ADiVIitag~~ 256 (488)
.|+||-+++..
T Consensus 80 ~d~Vih~A~~~ 90 (353)
T PLN02896 80 CDGVFHVAASM 90 (353)
T ss_pred CCEEEECCccc
Confidence 99999998754
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.25 Score=53.53 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=57.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-CccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-DIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d~eal~dADiVIita 253 (488)
...+||+|+|.|.-|.+.+..|...|. ++.+.|.++........+|.+. ....... +.+.+.++|+||.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALADA------ALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhhc------CEEEeCCCChHHccCCCEEEECC
Confidence 346799999999999999998888887 8999997543211112234321 1122222 235588999999998
Q ss_pred ccccCCCcchHhhHhhhHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDL 277 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei 277 (488)
|+|... .........+++++.++
T Consensus 78 gI~~~~-p~~~~a~~~~i~i~~~~ 100 (468)
T PRK04690 78 GISPYR-PEALAAAARGTPFIGGT 100 (468)
T ss_pred CCCCCC-HHHHHHHHcCCcEEEHH
Confidence 877432 11122234566666433
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.3 Score=43.16 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc------------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI------------ 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~------------ 240 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.+++.+.++....++.... + ..++. ...|.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEF--P-EREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhC--C-CCeEEEEECCCCCHHHHHHHHHH
Confidence 34578999998 9999999999999887 89999999888777666665431 1 11221 11221
Q ss_pred --cccCCCcEEEEecccc
Q psy12825 241 --AMSEGSRIVIITAGVR 256 (488)
Q Consensus 241 --eal~dADiVIitag~~ 256 (488)
+.+...|+||.++|..
T Consensus 82 ~~~~~g~id~li~~ag~~ 99 (257)
T PRK09242 82 VEDHWDGLHILVNNAGGN 99 (257)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 1245689999998763
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.85 Score=47.26 Aligned_cols=140 Identities=12% Similarity=0.129 Sum_probs=77.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
|++.||+|+|.|.+|...+..+....-. +| .++|+++ +++. .++ .+..+.|. +.+.++|+|++
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~-ELVgV~dr~~~~~~~---~~~----------~v~~~~d~~e~l~~iDVViI 66 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDM-ELVGVFSRRGAETLD---TET----------PVYAVADDEKHLDDVDVLIL 66 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCc-EEEEEEcCCcHHHHh---hcC----------CccccCCHHHhccCCCEEEE
Confidence 3468999999999999988887765322 54 4679875 3221 111 12222344 45789999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEE--EEeCCch---hHHHHHHHhcCCCCCcEEeecCChHHHH
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILL--IISNPVD---VLTYISWKLSGFPKNRVIGSGTNLDSMR 326 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vI--v~TNPvd---i~t~~~~k~sg~p~~rViG~gt~lds~R 326 (488)
+.... .. .+.... .++. ..+.+.- .-.++.+ .+-.++++..+. -+++.|-+.....
T Consensus 67 ctPs~-----th-------~~~~~~---~L~a-G~NVV~s~~~h~~~p~~~~~ld~AAk~~g~v---svi~~GwDPG~~s 127 (324)
T TIGR01921 67 CMGSA-----TD-------IPEQAP---YFAQ-FANTVDSFDNHRDIPRHRQVMDAAAKAAGNV---SVISTGWDPGMFS 127 (324)
T ss_pred cCCCc-----cC-------HHHHHH---HHHc-CCCEEECCCcccCCHHHHHHHHHHHHHcCCE---EEEECCCCcChHH
Confidence 85211 11 122222 2222 1221110 0112212 333444432232 3667777777777
Q ss_pred HHHHHHHHhCCCCCCceeEEEee
Q psy12825 327 FRVLLAQKLGLSPESVHGFIIGE 349 (488)
Q Consensus 327 ~~~~lA~~Lgv~p~~V~~~V~G~ 349 (488)
+++.+++.+ -|....-..||.
T Consensus 128 i~r~~~ea~--lp~g~~yt~wG~ 148 (324)
T TIGR01921 128 INRVYGEAV--LPKGQTYTFWGP 148 (324)
T ss_pred HHHHHHhcc--CCCCcceeccCC
Confidence 888888876 666666677884
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.59 Score=45.13 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=62.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM------ 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea------ 242 (488)
++.++|.|+|| |.+|.+++..|+..|. +|++++++. +.++....++.... .++. ...| .++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG-----GRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHH
Confidence 45578999998 9999999999998886 788888764 33444444443311 1111 1122 211
Q ss_pred -----cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe
Q psy12825 243 -----SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS 294 (488)
Q Consensus 243 -----l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T 294 (488)
+.+.|+||.+++..........+.+..|..-...+.+.+.++. ..+.+|+++
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 2468999998865321111122233445444444455544432 234555554
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.64 Score=47.75 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=63.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc---CCc----cccCCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG---SDI----AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t---td~----eal~dAD 247 (488)
+|||.|+|| |.+|+.++..|+.. +. +|+.+|++.+... ++... ...++... .+. +.++++|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~~~----~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDRLG----DLVNH----PRMHFFEGDITINKEWIEYHVKKCD 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHHHH----HhccC----CCeEEEeCCCCCCHHHHHHHHcCCC
Confidence 368999998 99999999999875 44 8999997654322 11110 01112111 122 2467999
Q ss_pred EEEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 248 IVIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 248 iVIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+||-+++.... ...........|+.-...+.+...+.. ..+|.+|.
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS 118 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 118 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 99988754321 122233444556666667777776653 34555543
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.23 Score=50.40 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=51.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh---hHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE---DRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~---e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d 245 (488)
.+.+++.|+|||.+|.++++.|+..|. .+|++++++. ++++..+.++.+.. ....+... .+. +.++.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-~~V~I~~R~~~~~~~a~~l~~~l~~~~---~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-KEITIFNIKDDFYERAEQTAEKIKQEV---PECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCchHHHHHHHHHHHHhhcC---CCceeEEechhhhhHHHhhhcc
Confidence 455789999999999999999988875 4699999986 66666666564321 11112111 121 24677
Q ss_pred CcEEEEecc
Q psy12825 246 SRIVIITAG 254 (488)
Q Consensus 246 ADiVIitag 254 (488)
+|+||.+..
T Consensus 200 ~DilINaTp 208 (289)
T PRK12548 200 SDILVNATL 208 (289)
T ss_pred CCEEEEeCC
Confidence 899999864
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.4 Score=42.90 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=68.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA---------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e---------- 241 (488)
+.+++.|+|+ |.+|..++..|+..|. +|++.+.+++.++....++.+.. ....+ ...| .+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~~~~~~~~~~ 78 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG---GEAVA-LAGDVRDEAYAKALVALAV 78 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEcCCCCHHHHHHHHHHHH
Confidence 4568999998 9999999999999887 89999999888877666665421 11111 1122 11
Q ss_pred -ccCCCcEEEEeccccc--CC--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -MSEGSRIVIITAGVRS--LV--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -al~dADiVIitag~~~--k~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|... .+ ..+. ...+..|+. ..+.+.+.+.+.. .+.+|+++.
T Consensus 79 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS 143 (254)
T PRK07478 79 ERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST 143 (254)
T ss_pred HhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 1346899999988632 11 1122 233455553 4445555554432 344555554
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.98 Score=43.36 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=38.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|| |.+|..++..|+.+|. +|++++++.+.+.....++..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~ 52 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEA 52 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 34578999998 9999999999999886 899999988766655555543
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.89 Score=44.74 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=65.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-----------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-----------M 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-----------a 242 (488)
++|.|+|+ |.+|..++..|+..|. +|++.|++.+.++....++.... ....+ ...| ++ .
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~-~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG---GDGFY-QRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEE-EEccCCCHHHHHHHHHHHHHH
Confidence 47899999 9999999999999887 89999998887776666665421 11111 1122 11 1
Q ss_pred cCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|+||.++|..... ..+.. ..+..|.. +.+.+.+.+.+... +.+|+++
T Consensus 75 ~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vs 135 (270)
T PRK05650 75 WGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIA 135 (270)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEEC
Confidence 24689999998754321 11111 23445533 34445555555433 4455554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.1 Score=43.87 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 50 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL 50 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence 45578999998 9999999999999887 8999999887666544443
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.52 Score=45.73 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+.+|. +|+++|++++.++....++.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 50 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEID 50 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence 34578999998 9999999999999887 89999998887766666664
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.87 Score=47.02 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.... ....+... +|.+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG---AEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHH
Confidence 34568999999 9999999999999987 89999999988887666665421 11111111 1221
Q ss_pred -ccCCCcEEEEecccc
Q psy12825 242 -MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 -al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 80 ~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 80 SFGGRIDVWVNNVGVG 95 (330)
T ss_pred HhcCCCCEEEECCCcC
Confidence 124689999999864
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.3 Score=43.59 Aligned_cols=47 Identities=15% Similarity=0.337 Sum_probs=39.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++++.+.+.++....++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~ 52 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIE 52 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 45679999998 9999999999999887 89999998877766555554
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.17 Score=56.12 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=75.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVI 250 (488)
.+|.|+|+|.+|+.++..|...+. +++++|.|+++.+.. .+.. ..+... +|. ..+++||.|+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~--~vvvId~d~~~~~~~-~~~g--------~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI--PLVVIETSRTRVDEL-RERG--------IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC--CEEEEECCHHHHHHH-HHCC--------CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 689999999999999999988887 899999999877643 2221 112211 232 2478999888
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHH
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVL 330 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~ 330 (488)
++.+. . .+|..+ ...+++.+|+..++.-.+-.+ ..+.++ ..|. +.++- +..-.-+.
T Consensus 487 v~~~~--------~---~~~~~i----v~~~~~~~~~~~iiar~~~~~-~~~~l~-~~Ga--d~vv~-----p~~~~a~~ 542 (558)
T PRK10669 487 LTIPN--------G---YEAGEI----VASAREKRPDIEIIARAHYDD-EVAYIT-ERGA--NQVVM-----GEREIART 542 (558)
T ss_pred EEcCC--------h---HHHHHH----HHHHHHHCCCCeEEEEECCHH-HHHHHH-HcCC--CEEEC-----hHHHHHHH
Confidence 87421 1 133333 333455567776665554222 223333 3454 35551 22234555
Q ss_pred HHHHhCCCC
Q psy12825 331 LAQKLGLSP 339 (488)
Q Consensus 331 lA~~Lgv~p 339 (488)
+++.+..+.
T Consensus 543 i~~~l~~~~ 551 (558)
T PRK10669 543 MLELLETPP 551 (558)
T ss_pred HHHHhcCCC
Confidence 666665443
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.36 Score=50.05 Aligned_cols=137 Identities=16% Similarity=0.222 Sum_probs=82.3
Q ss_pred CCCcEEEEecchhH-HHHH---HHHHhhhhHHHHHHHHHH-HHhhhCCC--------CCCCCceEEEEecccchHHHHHH
Q psy12825 129 PDQKITVVGAGQVG-MACT---YSILTQTMARDAVSTVDR-LLSQVAPS--------IESPDQKITVVGAGQVGMACTYS 195 (488)
Q Consensus 129 ~~~ki~vvg~g~vg-~~~a---~~~~~k~la~eivlid~~-~~~e~~~~--------~~~~~~KIaIIGAG~vG~~ia~~ 195 (488)
+...|+|.-+..+. -+.| ++++ -.+.+.+...++. +.+++... .....+++.|||.|.+|..+|..
T Consensus 86 ~~~gI~Vtnvp~~~t~sVAe~~~aLi-La~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r 164 (324)
T COG1052 86 KERGITVTNVPGYSTEAVAEHAVALI-LALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARR 164 (324)
T ss_pred HHCCcEEEeCCCCCchHHHHHHHHHH-HHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHH
Confidence 34567777666433 2333 4433 3577777777754 33332111 34568999999999999999887
Q ss_pred HHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHH
Q psy12825 196 ILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIF 274 (488)
Q Consensus 196 La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii 274 (488)
+. ++.-+|+.||+.+. .+ ...++ ...+.. + +-++.||+|++.+... .+|-.++
T Consensus 165 ~~--~Fgm~v~y~~~~~~-~~-~~~~~----------~~~y~~-l~ell~~sDii~l~~Plt-----------~~T~hLi 218 (324)
T COG1052 165 LK--GFGMKVLYYDRSPN-PE-AEKEL----------GARYVD-LDELLAESDIISLHCPLT-----------PETRHLI 218 (324)
T ss_pred Hh--cCCCEEEEECCCCC-hH-HHhhc----------Cceecc-HHHHHHhCCEEEEeCCCC-----------hHHhhhc
Confidence 76 66669999999764 21 11111 112222 4 5699999999986211 1122222
Q ss_pred HHHHHHHhccCCCcEEEEEe
Q psy12825 275 KDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 275 ~ei~~~I~~~~p~a~vIv~T 294 (488)
- .+.++...|.+++||.+
T Consensus 219 n--~~~l~~mk~ga~lVNta 236 (324)
T COG1052 219 N--AEELAKMKPGAILVNTA 236 (324)
T ss_pred C--HHHHHhCCCCeEEEECC
Confidence 2 33455556788888886
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.21 Score=47.63 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=37.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.+.++|.|+|+ |.+|..++..|+.+|. +|+++|++++.......++.
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~ 52 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVP 52 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHh
Confidence 34678999999 9999999999999886 79999998876655444443
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.17 Score=51.08 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=69.3
Q ss_pred EEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCc-cccCCCcEEEEecccccC
Q psy12825 182 VVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDI-AMSEGSRIVIITAGVRSL 258 (488)
Q Consensus 182 IIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~-eal~dADiVIitag~~~k 258 (488)
|+|+ |.+|++++..|+..+...+|+.+|+.+.... ..++.+.... .....+.-..+. ++++++|+||-++.....
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~ 79 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPP 79 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccc
Confidence 7887 9999999999999985568999998664221 1122211000 000111111122 589999999999864333
Q ss_pred CC-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 259 VG-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 259 ~G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.+ .....+..-|+.--+.+.+...+..- .-+|+|.-.+
T Consensus 80 ~~~~~~~~~~~vNV~GT~nvl~aa~~~~V--krlVytSS~~ 118 (280)
T PF01073_consen 80 WGDYPPEEYYKVNVDGTRNVLEAARKAGV--KRLVYTSSIS 118 (280)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHcCC--CEEEEEcCcc
Confidence 33 34566778888888888887776543 3455554433
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.2 Score=42.53 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=49.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A--------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e--------- 241 (488)
.+++|.|+|+ |.+|..++..|+..+. ++++. +.+.+.++.....+.... ....+ ...|. +
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEEG---GDAIA-VKADVSSEEDVENLVEQI 77 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CeEEE-EECCCCCHHHHHHHHHHH
Confidence 4568999998 9999999999988876 77787 998876665544444311 11111 12232 1
Q ss_pred --ccCCCcEEEEecccc
Q psy12825 242 --MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 --al~dADiVIitag~~ 256 (488)
.+.+.|+||..++..
T Consensus 78 ~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 78 VEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHhCCCCEEEECCCcC
Confidence 123689999998754
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.36 Score=50.88 Aligned_cols=37 Identities=27% Similarity=0.563 Sum_probs=31.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
..+..||.|||+|.+|+.++..|+..|+ .+|+|+|.|
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D 74 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDD 74 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 3445699999999999999999999886 489999874
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.2 Score=44.95 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=61.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
.++|.|+|| |.+|.+++..|+.+|. +|++.+++.+ .......++... .....+... +|. +++.++|
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~---~~~~~~~~~Dl~d~~~~~~~l~~~d 80 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE---EERLKVFDVDPLDYHSILDALKGCS 80 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC---CCceEEEEecCCCHHHHHHHHcCCC
Confidence 468999998 9999999999999887 8888876432 221112222110 011111111 122 4688999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
.|+-.++.+........+++..|+.-...+.+.+.+.
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~ 117 (297)
T PLN02583 81 GLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQT 117 (297)
T ss_pred EEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9886553322111123456777888777777777665
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.67 Score=45.74 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc--------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM-------- 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea-------- 242 (488)
+.++|.|+|| |.+|..++..|+.+|. +|++++.+++.++....++.+.. ...++. ...| ++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLN---LQQNIKVQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCCceeEEecCCCCHHHHHHHHHHH
Confidence 3457899998 9999999999998886 89999998877765544443321 011221 1122 221
Q ss_pred --cCCCcEEEEecccc
Q psy12825 243 --SEGSRIVIITAGVR 256 (488)
Q Consensus 243 --l~dADiVIitag~~ 256 (488)
+...|+||.+++..
T Consensus 77 ~~~~~id~vv~~ag~~ 92 (280)
T PRK06914 77 KEIGRIDLLVNNAGYA 92 (280)
T ss_pred HhcCCeeEEEECCccc
Confidence 24579999998764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.98 Score=45.84 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------ea 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.++++++++....++..... ....+ +|. +.
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~--~~~Dl---~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEV--VMLDL---ADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeE--EEccC---CCHHHHHHHHHHHHhc
Confidence 45578999999 9999999999999887 899999998877655544432110 00111 121 12
Q ss_pred cCCCcEEEEecccccCCCc---c-hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLVGE---T-RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~---~-r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+.|++|..+|....+.. + -...+..|.. +.+.+.+.+.+.. .+.+|++|
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 155 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS 155 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence 3578999999986432211 1 1222344433 4555566665543 34566665
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.42 Score=49.56 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...+..+ .++-... .+...++|.|||.|.+|+.++..+..-|. +|..||+...+-.. -.
T Consensus 112 L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm--~v~~~d~~~~~~~~----~~--- 182 (324)
T COG0111 112 LALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGM--KVIGYDPYSPRERA----GV--- 182 (324)
T ss_pred HHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCC--eEEEECCCCchhhh----cc---
Confidence 45778888777443 2222110 34457899999999999999888766676 99999993321111 00
Q ss_pred CCCCCCcEEEcCCcc-ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDIA-MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~e-al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..+....+++ -|+.||||++..... + ++..++- ++.+.+..|.+++||++-
T Consensus 183 -----~~~~~~~~Ld~lL~~sDiv~lh~PlT--~---------eT~g~i~--~~~~a~MK~gailIN~aR 234 (324)
T COG0111 183 -----DGVVGVDSLDELLAEADILTLHLPLT--P---------ETRGLIN--AEELAKMKPGAILINAAR 234 (324)
T ss_pred -----ccceecccHHHHHhhCCEEEEcCCCC--c---------chhcccC--HHHHhhCCCCeEEEECCC
Confidence 0112223454 489999999985211 1 1111221 223344447888898873
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.4 Score=42.20 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=52.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++++++.+.++....++... ..++. ...| ++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY-----GVKVVIATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh-----CCeEEEEECCCCCHHHHHHHHHH
Confidence 34568999998 8999999999998887 8999999887766555555421 11222 1222 11
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+.+.|+||.+++..
T Consensus 78 ~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 78 LKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHcCCccEEEEcCccc
Confidence 134799999998764
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.35 Score=46.97 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=39.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|| |.+|..++..|+..|. +|++++.+++.++....++..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~ 53 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIRE 53 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 35678999999 9999999999998886 899999998877766666643
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.22 Score=48.82 Aligned_cols=66 Identities=14% Similarity=0.336 Sum_probs=43.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC--ChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc--cccCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS--NEDRCKGEMLDLQHGAPFLRSPKIES-GSDI--AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di--~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~--eal~dADiV 249 (488)
.+.++|.|||+|.++..=+..|+..+- +|+++-. +++ +. ++... .++.. ..+| ++++++++|
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA--~VtVVap~i~~e-l~----~l~~~------~~i~~~~r~~~~~dl~g~~LV 89 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGC--YVYILSKKFSKE-FL----DLKKY------GNLKLIKGNYDKEFIKDKHLI 89 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCCCHH-HH----HHHhC------CCEEEEeCCCChHHhCCCcEE
Confidence 356799999999999877777877775 7888854 333 22 22211 12222 2233 579999999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
|.+.
T Consensus 90 iaAT 93 (223)
T PRK05562 90 VIAT 93 (223)
T ss_pred EECC
Confidence 9985
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.5 Score=42.57 Aligned_cols=110 Identities=8% Similarity=0.068 Sum_probs=66.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA----------- 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e----------- 241 (488)
+++.|+|+ |.+|..++..|+..|. .|+++|.+.+.++....++.... .++. ... |.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP-----GQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 57889998 8899999999998887 89999999887776665554321 1111 111 211
Q ss_pred ccCCCcEEEEecccccC-C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 MSEGSRIVIITAGVRSL-V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 al~dADiVIitag~~~k-~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+...|+||.++|.... + ..+. ...+..|+. +.+.+.+.+.+..+.+.++++|
T Consensus 75 ~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 75 KFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred HhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 13467999999875321 1 1222 223444443 4455555544434446677766
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.22 Score=50.77 Aligned_cols=68 Identities=22% Similarity=0.482 Sum_probs=52.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
+..+|..||.|.||.+++.+|+..|+ .|+.||++.++.+ ++.+.- .++ ...+ |-.+++|+||...+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~--kVtV~dr~~~k~~----~f~~~G-----a~v--~~sPaeVae~sDvvitmv~ 100 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGY--KVTVYDRTKDKCK----EFQEAG-----ARV--ANSPAEVAEDSDVVITMVP 100 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCC--EEEEEeCcHHHHH----HHHHhc-----hhh--hCCHHHHHhhcCEEEEEcC
Confidence 46799999999999999999999998 9999999887554 344431 122 2344 45789999999876
Q ss_pred cc
Q psy12825 255 VR 256 (488)
Q Consensus 255 ~~ 256 (488)
.+
T Consensus 101 ~~ 102 (327)
T KOG0409|consen 101 NP 102 (327)
T ss_pred Ch
Confidence 44
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.1 Score=43.47 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=39.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.+++.|+|| |.+|..++..|+..|. +|++.|++++.++....++.+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~ 55 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQ 55 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHh
Confidence 34578999998 9999999999998886 899999998877766666654
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.4 Score=42.47 Aligned_cols=43 Identities=9% Similarity=0.263 Sum_probs=35.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEM 219 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~ 219 (488)
++.++|.|+|| |.+|..++..|+..|. +|++++++++.++...
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAAR 47 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHH
Confidence 34578999999 9999999999999886 8999999876665433
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.35 Score=51.69 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
.+.++|.|+|| |.+|..++..|+..|. +++++|.+++.++.. +.+.. ........ +|. +.+.+.|
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~~~---~~~~~---~~v~~v~~Dvsd~~~v~~~l~~ID 247 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKITLE---INGED---LPVKTLHWQVGQEAALAELLEKVD 247 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH---HhhcC---CCeEEEEeeCCCHHHHHHHhCCCC
Confidence 35678999999 9999999999998886 899999987655322 21110 01111111 222 2467899
Q ss_pred EEEEecccccCCCcch---HhhHhhhHH----HHHHHHHHHhcc
Q psy12825 248 IVIITAGVRSLVGETR---LQLVDRNVK----IFKDLIPKIAKG 284 (488)
Q Consensus 248 iVIitag~~~k~G~~r---~dll~~N~~----ii~ei~~~I~~~ 284 (488)
++|..+|.......+. .+.+..|.. +.+.+.+.+++.
T Consensus 248 iLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 248 ILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999987643322222 233455544 455555555543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.28 Score=49.67 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=43.7
Q ss_pred CCceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhh-cCCCCCCCcEEEcCCc----cccCCCcEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQH-GAPFLRSPKIESGSDI----AMSEGSRIV 249 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~-~~~~~~~~~v~~ttd~----eal~dADiV 249 (488)
.+.||+.||+|++-.+. ..|+.. +....++-+|++++..+- ...+-. ........++. +.|. .++++.|+|
T Consensus 120 ~p~rVaFIGSGPLPlT~-i~la~~~~~~~~v~~iD~d~~A~~~-a~~lv~~~~~L~~~m~f~-~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTS-IVLAKQHGPGARVHNIDIDPEANEL-ARRLVASDLGLSKRMSFI-TADVLDVTYDLKEYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHH-HHHH--HTT--EEEEEESSHHHHHH-HHHHHH---HH-SSEEEE-ES-GGGG-GG----SEE
T ss_pred ccceEEEEcCCCcchHH-HHHHHHhCCCCeEEEEeCCHHHHHH-HHHHHhhcccccCCeEEE-ecchhccccccccCCEE
Confidence 45799999999997653 333322 334478899999986653 333332 11111122333 3342 468899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEE
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCIL 290 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~v 290 (488)
++++-+ |++ .+-+.++...+.++. |++.+
T Consensus 197 ~lAalV----g~~--------~e~K~~Il~~l~~~m~~ga~l 226 (276)
T PF03059_consen 197 FLAALV----GMD--------AEPKEEILEHLAKHMAPGARL 226 (276)
T ss_dssp EE-TT-----S------------SHHHHHHHHHHHS-TTSEE
T ss_pred EEhhhc----ccc--------cchHHHHHHHHHhhCCCCcEE
Confidence 999732 221 223455666666654 45543
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.13 Score=44.35 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=44.9
Q ss_pred ceEEEEecccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccC--CCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSE--GSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~--dADiVIita 253 (488)
+||+|||+|.+|......+.... ...-+.++|.++++.+....... .. ..+|++ .++ +.|+|+++.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~--------~~--~~~~~~~ll~~~~~D~V~I~t 70 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG--------IP--VYTDLEELLADEDVDAVIIAT 70 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT--------SE--EESSHHHHHHHTTESEEEEES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc--------cc--chhHHHHHHHhhcCCEEEEec
Confidence 48999999999998877777663 23234589999987765422221 11 345664 343 899999996
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.3 Score=44.53 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=53.2
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e------- 241 (488)
..+.++|.|+|+ |.+|..++..|+..|. +|++.+++++.++....++... .++. ... |.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~------~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD------DRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC------CcEEEEEecCCCHHHHHHHHH
Confidence 345678999998 9999999999999886 8999999988777665555321 1111 111 221
Q ss_pred ----ccCCCcEEEEecccc
Q psy12825 242 ----MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ----al~dADiVIitag~~ 256 (488)
.+...|+||.++|..
T Consensus 78 ~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 78 EAVERFGGIDVVVANAGIA 96 (296)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 235689999999864
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.37 Score=46.63 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM----------- 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea----------- 242 (488)
+++.|+|+ |.+|..++..|+..|. +|++++.+++.++....++.... ....+ ...| .++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~---~~~~~-~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG---GKAVA-YKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEE-EEcCCCCHHHHHHHHHHHHHH
Confidence 36889998 9999999999998886 89999998777766555554321 01111 1122 211
Q ss_pred cCCCcEEEEecccccC-C--CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSL-V--GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k-~--G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|+||.+++.... + ..+.. ..+..|+. +.+.+.+.+.+......+++++
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 75 FGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 2357999999876321 1 22222 22444443 3345555565554445566554
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.3 Score=42.83 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
..+.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~ 58 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEA 58 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHh
Confidence 446678999998 9999999999998876 899999998877766666654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.51 Score=46.12 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=36.5
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc
Confidence 368999998 9999999999999886 8999999988776554444
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.53 Score=50.60 Aligned_cols=69 Identities=23% Similarity=0.349 Sum_probs=47.5
Q ss_pred eEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 179 KITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 179 KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+|.+||.|..|.+ +|..|...|. +|...|.+... ...+|+.. ...+...-+.+.+.++|+||.+.+++.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~--~v~~~D~~~~~---~~~~l~~~-----gi~~~~g~~~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGY--QVSGSDIAENA---TTKRLEAL-----GIPIYIGHSAENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCC--eEEEECCCcch---HHHHHHHC-----cCEEeCCCCHHHCCCCCEEEECCCCCC
Confidence 5889999999998 8888888887 89999986542 22334331 112222223355788999999988764
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.9 Score=42.15 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=53.8
Q ss_pred CCCCCceEEEEec-c-cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-----
Q psy12825 173 IESPDQKITVVGA-G-QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----- 241 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G-~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----- 241 (488)
+.++.+++.|+|+ | .+|..++..|+..|. +|++.|.+.++++....++.... . ..++. ...|. +
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~Dl~~~~~~~~~ 87 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAEL--G-LGRVEAVVCDVTSEAQVDAL 87 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhc--C-CceEEEEEccCCCHHHHHHH
Confidence 4455688999998 6 699999999998887 79999998887776666665421 1 11121 12232 1
Q ss_pred ------ccCCCcEEEEecccc
Q psy12825 242 ------MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ------al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 88 ~~~~~~~~g~id~li~~ag~~ 108 (262)
T PRK07831 88 IDAAVERLGRLDVLVNNAGLG 108 (262)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 124679999999853
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.5 Score=42.16 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----------- 241 (488)
+++++.|+|+ |.+|..++..|+.+|. .|++++++++.++....++.... ....+... +|++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG---VKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4568999998 9999999999999887 89999998876665555444311 11111111 1221
Q ss_pred ccCCCcEEEEecccc
Q psy12825 242 MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 al~dADiVIitag~~ 256 (488)
.+...|+||.++|..
T Consensus 80 ~~~~id~lv~~ag~~ 94 (241)
T PRK07454 80 QFGCPDVLINNAGMA 94 (241)
T ss_pred HcCCCCEEEECCCcc
Confidence 124589999998764
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.2 Score=40.95 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=39.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.++.++|.|+|+ |.+|..++..|+..|. +|++++++++.++....++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHH
Confidence 355678999998 9999999999998887 89999999987776655554
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.025 Score=58.35 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=29.3
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+.||+|||+|.||.++||.+..+++ .|++++|
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~D 36 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNL-GDVVLYD 36 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEE
Confidence 4599999999999999999999998 5699988
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.96 Score=49.27 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=72.6
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA------- 241 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e------- 241 (488)
..++.+++.|+|| |.+|..++..|+..|. +|++.+++.+.++....++.... ....+ ...| .+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dv~~~~~~~~~~~ 384 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG---AVAHA-YRVDVSDADAMEAFAE 384 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEE-EEcCCCCHHHHHHHHH
Confidence 4456678999999 9999999999999887 79999999888776666664321 11111 1122 21
Q ss_pred ----ccCCCcEEEEecccccCC---CcchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSLV---GETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~---G~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|.++|..... ..+.. ..+..|+ ...+.+...+.+....+.||+++-
T Consensus 385 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 385 WVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred HHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 123579999999875321 11222 2234453 344555555655554566766654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.56 Score=44.94 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d 221 (488)
++.+++.|+|+ |.+|..++..|+.++. .|.+.+.+.+.++....+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~ 49 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAE 49 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHH
Confidence 45678999998 9999999999999886 788888888777654433
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.16 Score=53.67 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=44.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIi 251 (488)
.....++|+|||.|.||..++..+..-|. +|+.+|......+ . ... ..+++ .+++||+|++
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~--~V~~~Dp~~~~~~-------~--------~~~-~~~l~ell~~aDiV~l 173 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW--KVLVCDPPRQEAE-------G--------DGD-FVSLERILEECDVISL 173 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCcccccc-------c--------Ccc-ccCHHHHHhhCCEEEE
Confidence 34567899999999999999998876666 8999997432110 0 001 12454 4789999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
..
T Consensus 174 h~ 175 (381)
T PRK00257 174 HT 175 (381)
T ss_pred eC
Confidence 86
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.15 Score=47.81 Aligned_cols=58 Identities=21% Similarity=0.347 Sum_probs=43.8
Q ss_pred CCCCCceEEEEecccc-hHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQV-GMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~v-G~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIi 251 (488)
.....+||.|||+|.+ |..++..|...+. +|.+++.+.+.+ ++.+++||+||.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~~~l------------------------~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKTKNL------------------------KEHTKQADIVIV 93 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCchhH------------------------HHHHhhCCEEEE
Confidence 4567889999999975 8888999988876 688998753111 135678999999
Q ss_pred ecccc
Q psy12825 252 TAGVR 256 (488)
Q Consensus 252 tag~~ 256 (488)
+.+.+
T Consensus 94 at~~~ 98 (168)
T cd01080 94 AVGKP 98 (168)
T ss_pred cCCCC
Confidence 87654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.83 Score=50.42 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHH-hhhCCC----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRLL-SQVAPS----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~~~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...++... ++.... .....++|+|||.|.+|..+|..+..-|. +|+.||...... ...++
T Consensus 108 L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~--~~~~~---- 179 (525)
T TIGR01327 108 LAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGM--KVLAYDPYISPE--RAEQL---- 179 (525)
T ss_pred HHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChh--HHHhc----
Confidence 457777776664432 211110 34567899999999999999998865555 899999843211 11111
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+....++ +.+++||+|++...... ++..++- .+.+....|.+++||++-
T Consensus 180 ------g~~~~~~l~ell~~aDvV~l~lPlt~-----------~T~~li~--~~~l~~mk~ga~lIN~aR 230 (525)
T TIGR01327 180 ------GVELVDDLDELLARADFITVHTPLTP-----------ETRGLIG--AEELAKMKKGVIIVNCAR 230 (525)
T ss_pred ------CCEEcCCHHHHHhhCCEEEEccCCCh-----------hhccCcC--HHHHhcCCCCeEEEEcCC
Confidence 11223355 46889999999862110 1111221 234444567888888873
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=1 Score=44.45 Aligned_cols=117 Identities=10% Similarity=0.083 Sum_probs=69.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.... ......... +|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES--NVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEecCCCHHHHHHHHHHHH
Confidence 34567888998 8999999999999986 89999999888776666664321 001111111 1221
Q ss_pred ccCCCcEEEEecccccCC---CcchH---hhHhhh----HHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 MSEGSRIVIITAGVRSLV---GETRL---QLVDRN----VKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 al~dADiVIitag~~~k~---G~~r~---dll~~N----~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|++|.++|..... ..+.. ..+.-| ....+.+.+.+.+.. .+.||+++-.
T Consensus 82 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~ 145 (263)
T PRK08339 82 NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV 145 (263)
T ss_pred hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence 123589999998864321 11222 223334 334566666665543 3556666543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.8 Score=44.05 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----cc---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MS--- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al--- 243 (488)
.+.++|.|+|+ |.+|..++..|+..|. +|++++++.++++....++... .....+. ..| .+ .+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~-~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP---PDSYTII-HIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc---CCceEEE-EecCCCHHHHHHHHHHH
Confidence 35678999998 9999999999999885 8999999988777665555321 0111111 122 21 11
Q ss_pred ----CCCcEEEEecccccC----CCcch---HhhHhhhHH----HHHHHHHHHhccCC-CcEEEEEe
Q psy12825 244 ----EGSRIVIITAGVRSL----VGETR---LQLVDRNVK----IFKDLIPKIAKGSP-DCILLIIS 294 (488)
Q Consensus 244 ----~dADiVIitag~~~k----~G~~r---~dll~~N~~----ii~ei~~~I~~~~p-~a~vIv~T 294 (488)
...|++|..+|.... ...+. ...+..|.- +.+.+.+.+.+... .+.||+++
T Consensus 78 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 78 RALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred HHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999999986321 11222 223455543 44555555555432 23455554
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.53 Score=48.37 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=75.0
Q ss_pred CcEEEEec-chhHHHHH-HHH-HhhhhHHHHHHHHHHHH-hhhCCC----------CCCCCceEEEEecccchHHHHHHH
Q psy12825 131 QKITVVGA-GQVGMACT-YSI-LTQTMARDAVSTVDRLL-SQVAPS----------IESPDQKITVVGAGQVGMACTYSI 196 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a-~~~-~~k~la~eivlid~~~~-~e~~~~----------~~~~~~KIaIIGAG~vG~~ia~~L 196 (488)
..|.|.-+ |..+-++| |++ ++-.+++.+...++... ++.... .....++|+|||.|.+|+.+|..+
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 35555443 33333444 322 22357777776664431 222110 245778999999999999998876
Q ss_pred HHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHH
Q psy12825 197 LTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFK 275 (488)
Q Consensus 197 a~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ 275 (488)
. ++.-+|.-||+..... +. .+. ..++ +.++.||+|++..... + +|-.++-
T Consensus 165 ~--~fgm~V~~~d~~~~~~--------~~-------~~~-~~~l~ell~~sDvv~lh~Plt--~---------~T~~li~ 215 (311)
T PRK08410 165 Q--AFGAKVVYYSTSGKNK--------NE-------EYE-RVSLEELLKTSDIISIHAPLN--E---------KTKNLIA 215 (311)
T ss_pred h--hcCCEEEEECCCcccc--------cc-------Cce-eecHHHHhhcCCEEEEeCCCC--c---------hhhcccC
Confidence 4 4444899999853110 00 011 1255 4589999999986211 1 1111221
Q ss_pred HHHHHHhccCCCcEEEEEeC
Q psy12825 276 DLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 276 ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.+....|++++||++-
T Consensus 216 --~~~~~~Mk~~a~lIN~aR 233 (311)
T PRK08410 216 --YKELKLLKDGAILINVGR 233 (311)
T ss_pred --HHHHHhCCCCeEEEECCC
Confidence 223444568899999873
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.38 Score=49.85 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=47.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
+..+.++|+|||.|++|..+|..|...|+ +|+.+|......+ ..... ... . .++ ++++.||+|++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~--~ViV~~r~~~s~~-----~A~~~----G~~--v-~sl~Eaak~ADVV~l 77 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV--EVVVGVRPGKSFE-----VAKAD----GFE--V-MSVSEAVRTAQVVQM 77 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcC--EEEEEECcchhhH-----HHHHc----CCE--E-CCHHHHHhcCCEEEE
Confidence 56678899999999999999999988887 8888885422111 11111 011 1 245 67999999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
..
T Consensus 78 lL 79 (335)
T PRK13403 78 LL 79 (335)
T ss_pred eC
Confidence 95
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.1 Score=44.07 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=67.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------ea 242 (488)
++.++|.|+|| |.+|..++..|+..|. .|++.+++++.++....++..... ....+ +|+ +.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~D~---~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVG--GPLDV---TDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceE--EEccC---CCHHHHHHHHHHHHHH
Confidence 34578999999 9999999999998886 799999998877665544431100 00011 111 12
Q ss_pred cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|.++|...... .+ -...+..|+. +.+.+.+.+.+.. .+.|++++-
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS 137 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS 137 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 357899999988643211 11 1223445543 3444555554433 345666653
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.7 Score=49.45 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=39.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.++.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEIN 459 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 345578999998 9999999999999886 89999999887776655554
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.4 Score=42.93 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=53.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.... ...++. ...| .+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDV---AGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcc---CCceEEEEEccCCCHHHHHHHHHH
Confidence 45678999998 9999999999999886 89999999888877666665421 011221 1122 11
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|..+|..
T Consensus 80 ~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHHhCCCcEEEECCCcC
Confidence 134689999998854
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.4 Score=43.84 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=51.5
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc----------ccC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA----------MSE 244 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e----------al~ 244 (488)
.+.|.|+|.+|..++..|+ .|. +|++.|++++.++....++.+.. .++. ... |.+ .+.
T Consensus 4 ~~lItGa~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG-----FDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred EEEEECCChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 4566678999999999985 554 89999998877765555554311 1111 111 221 124
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHH
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVK 272 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ 272 (488)
..|++|.++|.... ..+-...+..|+.
T Consensus 76 ~id~li~nAG~~~~-~~~~~~~~~vN~~ 102 (275)
T PRK06940 76 PVTGLVHTAGVSPS-QASPEAILKVDLY 102 (275)
T ss_pred CCCEEEECCCcCCc-hhhHHHHHHHhhH
Confidence 68999999986421 1223344555654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.1 Score=42.80 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=38.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+.+|. +|.+++++++..+....++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~ 50 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELR 50 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHH
Confidence 34578999999 9999999999998887 79999999877765555554
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.4 Score=44.68 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=60.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----cccCCCcE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMSEGSRI 248 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal~dADi 248 (488)
.++|.|+|| |.+|++++..|+..|. +|++...+.+..+. ...+...........+. ..| + +.++++|+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~d~ 80 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKK-TEHLLALDGAKERLKLF-KADLLEESSFEQAIEGCDA 80 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHH-HHHHHhccCCCCceEEE-ecCCCCcchHHHHHhCCCE
Confidence 468999998 9999999999999886 77766555443321 11221110000111221 122 2 34778999
Q ss_pred EEEecccccC-CCcchHhhHhhhHHHHHHHHHHHhcc
Q psy12825 249 VIITAGVRSL-VGETRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 249 VIitag~~~k-~G~~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
||-+++.... ......+++..|+.-...+.+.+.+.
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 81 VFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 9999874321 11122345566777777777776654
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.19 Score=44.46 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=44.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
+||+|+|+ |.||..++..+....-..=+..+|.+++... -.|+.+..... ...+..++|++ .+..+|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~--g~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV--GKDVGELAGIG-PLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT--TSBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc--cchhhhhhCcC-CcccccchhHHHhcccCCEEEEcC
Confidence 58999999 9999999999888542222456677663222 23444433211 33344557774 577899888773
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.64 Score=49.93 Aligned_cols=123 Identities=16% Similarity=0.251 Sum_probs=68.9
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh-HHHHHHHHHhhcCCCCCCCcEEEcCCcc------ccCCCcEEEE
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED-RCKGEMLDLQHGAPFLRSPKIESGSDIA------MSEGSRIVII 251 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e-~l~g~~~dL~~~~~~~~~~~v~~ttd~e------al~dADiVIi 251 (488)
||.|||+|..|.+.|..|...|. +|.++|.++. ........|.+. ..++....+.+ .+.+.|+||.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE-----GITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc-----CCEEEECCccchhhhhHHhhcCCEEEE
Confidence 79999999999999888888887 8999998543 222111223332 12232222222 4778999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHHhcCCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWKLSGFP 311 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k~sg~p 311 (488)
+.+.+... .........+++++.++........ +..+|-+|-... +++.++.. .|+.
T Consensus 75 s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~-~g~~ 137 (459)
T PRK02705 75 SPGIPWDH-PTLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQA-AGLN 137 (459)
T ss_pred CCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHH-cCCC
Confidence 88776321 1111222455666655544322222 223556654443 44555543 4543
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.46 Score=45.38 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=49.5
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEeccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIitag~ 255 (488)
|||+|||| |.+|+.++.....+|. |++-+=+|+.++... .++. . ....|.--+. -+++.|-|+||.+.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~-~~~~-i----~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR-QGVT-I----LQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc-ccce-e----ecccccChhhhHhhhcCCceEEEeccC
Confidence 79999999 9999999999999998 889888888766431 1110 0 0011110011 1579999999999875
Q ss_pred cc
Q psy12825 256 RS 257 (488)
Q Consensus 256 ~~ 257 (488)
+.
T Consensus 73 ~~ 74 (211)
T COG2910 73 GA 74 (211)
T ss_pred CC
Confidence 53
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.4 Score=43.29 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhH-HHHHHHHHhhcCCCCCCCcEEEc--CCc-------cc-
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDR-CKGEMLDLQHGAPFLRSPKIESG--SDI-------AM- 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~-l~g~~~dL~~~~~~~~~~~v~~t--td~-------ea- 242 (488)
+.++|.|+|| |.+|..++..|+.++ . .|++++++++. ++....++.... .....+... +|. +.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCCChHHHHHHHHHH
Confidence 4567999999 999999999999875 5 89999998875 666666665421 001111111 121 11
Q ss_pred --cCCCcEEEEecccccCCCc---ch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 --SEGSRIVIITAGVRSLVGE---TR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 --l~dADiVIitag~~~k~G~---~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..+.|++|..+|....... +. .+.+..|+. +.+.+.+.+.+... +.+++++
T Consensus 83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is 145 (253)
T PRK07904 83 FAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS 145 (253)
T ss_pred HhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 1379999998876432111 11 123455543 33556666666544 4455554
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.46 Score=48.97 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC----------CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS----------IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML 220 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~----------~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~ 220 (488)
-.+++.+...++.. .++.... .....++|+|||.|.+|..+|..+. ++.-+|+-||.....
T Consensus 112 L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~--~fgm~V~~~~~~~~~------ 183 (317)
T PRK06487 112 LALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE--AFGMRVLIGQLPGRP------ 183 (317)
T ss_pred HHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh--hCCCEEEEECCCCCc------
Confidence 35677776666442 2221110 2356789999999999999988775 444489999975210
Q ss_pred HHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 221 DLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 221 dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
... . ..++ +.++.||+|++..... + +|-.++- .+.+....|.+++||++-
T Consensus 184 ---~~~------~---~~~l~ell~~sDiv~l~lPlt--~---------~T~~li~--~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 184 ---ARP------D---RLPLDELLPQVDALTLHCPLT--E---------HTRHLIG--ARELALMKPGALLINTAR 234 (317)
T ss_pred ---ccc------c---ccCHHHHHHhCCEEEECCCCC--h---------HHhcCcC--HHHHhcCCCCeEEEECCC
Confidence 000 0 1245 4589999999985211 1 1111111 223344467899999974
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.1 Score=43.51 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
..+.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++..
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~ 57 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRA 57 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 356789999999 9999999999998886 899999998877766666653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.2 Score=50.69 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=67.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.... ...+... +|.+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~~----~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGPD----RALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhccC----cEEEEEecCCCHHHHHHHHHHHH
Confidence 34578999997 9999999999998886 89999999887766555554310 0111111 1221
Q ss_pred -ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 -MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 -al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+.+.|+||.++|..... ..+.. ..+..|.. +.+...+.+++....+.+++++
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 134789999999864321 11111 12334433 4444455555543335566655
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.29 Score=48.32 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCcc-----------c
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDIA-----------M 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~e-----------a 242 (488)
+.++|.|+|+ |.+|..++..|+..|. +|++.+++++.++.... ... .-+.. -+|.+ .
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l~~~~~---~~~-----~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKMEDLAS---LGV-----HPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh---CCC-----eEEEeeCCCHHHHHHHHHHHHHh
Confidence 4578999998 9999999999998886 89999998876653221 100 00111 01221 1
Q ss_pred cCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|.++|..... ..+ ....+..|.. ..+.+.+.+++... +.+|+++-
T Consensus 72 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 72 EGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 23789999998864221 111 2233444543 34555566655543 34566553
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=92.88 E-value=3.7 Score=40.48 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
++.+++.|+|+ |.+|..++..|+..|. +|+++|.+++..+....++
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~ 62 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSL 62 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHh
Confidence 44578999998 9999999999998886 8999999876665544444
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.2 Score=43.68 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e-------- 241 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|++.++++++++....++.... . ..++. ... |.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKF--P-GARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhC--C-CceEEEEEecCCCHHHHHHHHHH
Confidence 34568999999 8999999999999887 79999999888877666665421 1 11221 111 221
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 81 ~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 234679999999864
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.22 Score=46.44 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=43.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
....++++|+|.|.+|.++|..|...|. .|..+|+|+-++-...+ +. .++. +-.++++.+|++|.+.
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga--~V~V~e~DPi~alqA~~---dG------f~v~--~~~~a~~~adi~vtaT 86 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA--RVTVTEIDPIRALQAAM---DG------FEVM--TLEEALRDADIFVTAT 86 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHHHH---TT-------EEE---HHHHTTT-SEEEE-S
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC--EEEEEECChHHHHHhhh---cC------cEec--CHHHHHhhCCEEEECC
Confidence 4467899999999999999999988776 89999999965432222 21 1222 1236899999988875
Q ss_pred c
Q psy12825 254 G 254 (488)
Q Consensus 254 g 254 (488)
|
T Consensus 87 G 87 (162)
T PF00670_consen 87 G 87 (162)
T ss_dssp S
T ss_pred C
Confidence 4
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.66 Score=46.17 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCC-----C----CeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGI-----Y----SNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l-----~----~el~L~Di 210 (488)
++.||.|||+|.+|+.++..|+..|+ . .+|+|+|-
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~ 53 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDD 53 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECC
Confidence 56799999999999999999998642 1 18999996
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=1.7 Score=44.84 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.... .++. ...| .+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g-----~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG-----GEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC-----CcEEEEEecCCCHHHHHHHHH
Confidence 345678999999 9999999999999886 89999999888877666665321 1111 1122 21
Q ss_pred ----ccCCCcEEEEecccc
Q psy12825 242 ----MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ----al~dADiVIitag~~ 256 (488)
.+...|++|..++..
T Consensus 78 ~~~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMVT 96 (334)
T ss_pred HHHHHCCCCCEEEECCCcC
Confidence 134689999998754
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.39 Score=46.79 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=37.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+.++|.|+|+ |.+|..++..|+..|. +|+++|.+.+.++....++
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 50 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEI 50 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHh
Confidence 3467999998 9999999999999987 8999999988776655444
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.2 Score=47.75 Aligned_cols=99 Identities=15% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCCCCceEEEEecccchHHHHHH-HHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccC--CCcE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYS-ILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSE--GSRI 248 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~-La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~--dADi 248 (488)
+..+..+|.|||+|.+|.+++.. +..+.-..-+..+|++++..-... .+ ..|.--.+++ -++ |.|+
T Consensus 80 g~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~---~~-------v~V~~~d~le~~v~~~dv~i 149 (211)
T COG2344 80 GQDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI---GD-------VPVYDLDDLEKFVKKNDVEI 149 (211)
T ss_pred CCCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc---CC-------eeeechHHHHHHHHhcCccE
Confidence 55667899999999999987653 443444456789999997443221 11 1122112332 233 8999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
.|+|+. .+..++++..+.+..=++ |+++| |+.+
T Consensus 150 aiLtVP----------------a~~AQ~vad~Lv~aGVkG-IlNFt-Pv~l 182 (211)
T COG2344 150 AILTVP----------------AEHAQEVADRLVKAGVKG-ILNFT-PVRL 182 (211)
T ss_pred EEEEcc----------------HHHHHHHHHHHHHcCCce-EEecc-ceEe
Confidence 999962 235577888888877667 67776 6643
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=3 Score=40.63 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-------cccCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-------AMSEG 245 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-------eal~d 245 (488)
+.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++..... ....+... +|. +.+..
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAHG--VDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHhCC
Confidence 4578999998 8999999999998887 899999998877766666653210 01111111 122 23567
Q ss_pred CcEEEEecccccC-C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 246 SRIVIITAGVRSL-V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 246 ADiVIitag~~~k-~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.|++|.++|.... + ..+. ...+..|+. +.+.+.+.+.+.. .+.+++++.
T Consensus 82 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 82 IDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 9999999886421 1 1111 223444544 3455555555442 345666553
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.46 Score=45.68 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE 218 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~ 218 (488)
++.+++.|+|+ |.+|..++..|+..+. +|++++++.+.++..
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~~ 49 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALDRL 49 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH
Confidence 44578999999 8999999999999886 899999988766543
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.034 Score=56.96 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=29.1
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+.||+|||+|.||.++||++..++++ +++++|
T Consensus 1 ~~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvD 32 (305)
T TIGR01763 1 RKKISVIGAGFVGATTAFRLAEKELA-DLVLLD 32 (305)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCC-eEEEEe
Confidence 35999999999999999999999988 688888
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.86 Score=44.40 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
.+.++|.|+|+ |.+|.+++..|+..|. +|+++|.++++...
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~ 49 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSK 49 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHH
Confidence 34578999998 9999999999998886 89999988765543
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.3 Score=43.26 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=54.6
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------- 241 (488)
.++.+++.|+|| +.+|..++..|+..|. +|++.+++.++++....++.... ...++. ...|. +
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~---~~~~v~~~~~Dl~d~~sv~~~~~ 85 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAV---PDAKLSLRALDLSSLASVAALGE 85 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC---CCCceEEEEecCCCHHHHHHHHH
Confidence 345678999999 9999999999999886 89999999888877666665421 111221 11222 1
Q ss_pred ----ccCCCcEEEEecccc
Q psy12825 242 ----MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ----al~dADiVIitag~~ 256 (488)
.....|++|..+|..
T Consensus 86 ~~~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 86 QLRAEGRPIHLLINNAGVM 104 (313)
T ss_pred HHHHhCCCccEEEECCccc
Confidence 134589999998864
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.34 Score=51.81 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHH-HhhhCC----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC
Q psy12825 153 TMARDAVSTVDRL-LSQVAP----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP 227 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~ 227 (488)
.+++.+...+... .++... ......++|+|||.|.+|..+|..+..-|. +|.-||...... .
T Consensus 122 ~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm--~V~~~d~~~~~~------~----- 188 (409)
T PRK11790 122 LLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGM--RVYFYDIEDKLP------L----- 188 (409)
T ss_pred HHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCcccc------c-----
Confidence 4666666555432 122211 134578899999999999999987765455 899999753110 0
Q ss_pred CCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 228 FLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 228 ~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..+....++ +.++.||+|++... .. ..|..++- .+.+....|.+++||++-
T Consensus 189 ----~~~~~~~~l~ell~~sDiVslh~P--lt---------~~T~~li~--~~~l~~mk~ga~lIN~aR 240 (409)
T PRK11790 189 ----GNARQVGSLEELLAQSDVVSLHVP--ET---------PSTKNMIG--AEELALMKPGAILINASR 240 (409)
T ss_pred ----CCceecCCHHHHHhhCCEEEEcCC--CC---------hHHhhccC--HHHHhcCCCCeEEEECCC
Confidence 012223356 45899999999852 11 11222221 223444567899999873
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.81 Score=48.38 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH--HHHHhhcCCCCCCCcEEEc--CCc----ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE--MLDLQHGAPFLRSPKIESG--SDI----AMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~--~~dL~~~~~~~~~~~v~~t--td~----eal 243 (488)
...+.+||.|+|+ |.+|..++..|+.++. +|++++++...+... ..++... .....+... +|. +.+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~ 130 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKE---LPGAEVVFGDVTDADSLRKVL 130 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhh---cCCceEEEeeCCCHHHHHHHH
Confidence 4456789999999 9999999999998886 899999876543210 1111111 011222221 232 234
Q ss_pred C----CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 244 E----GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 244 ~----dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ ++|+||.+++.+... . .+....|......+.+.+++..-.- +|++|
T Consensus 131 ~~~~~~~D~Vi~~aa~~~~~--~-~~~~~vn~~~~~~ll~aa~~~gv~r-~V~iS 181 (390)
T PLN02657 131 FSEGDPVDVVVSCLASRTGG--V-KDSWKIDYQATKNSLDAGREVGAKH-FVLLS 181 (390)
T ss_pred HHhCCCCcEEEECCccCCCC--C-ccchhhHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence 4 589999887643211 1 1223345555566666666654333 44444
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.42 Score=46.47 Aligned_cols=41 Identities=20% Similarity=0.200 Sum_probs=34.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML 220 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~ 220 (488)
|+|.|+|+ |.+|..++..|+..|. +|++++++++.++....
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH
Confidence 57999998 9999999999998886 89999999877665433
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.9 Score=41.79 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+..++|.|+|+ |.+|..++..|+..+. +|+++++++++++....++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~ 54 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVERLKELRAEIE 54 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 45689999998 9999999999998886 89999999887776655554
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.3 Score=42.47 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=28.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di 210 (488)
+.++|.|+|| |.+|..++..|+.++. ++++++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDI 38 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 4578999998 9999999999998886 7888775
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.29 Score=47.99 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=48.8
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC----c-ccc-
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD----I-AMS- 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td----~-eal- 243 (488)
+..+++||.|+|| |.+|..++..|+.++. +|+.+.++.+++.... ... ....+... +| . +.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~---~~~----~~~~~~~~Dl~d~~~~l~~~~~ 83 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTSL---PQD----PSLQIVRADVTEGSDKLVEAIG 83 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHhc---ccC----CceEEEEeeCCCCHHHHHHHhh
Confidence 5556789999998 9999999999998876 7888887776543211 110 01111111 12 1 345
Q ss_pred CCCcEEEEecccc
Q psy12825 244 EGSRIVIITAGVR 256 (488)
Q Consensus 244 ~dADiVIitag~~ 256 (488)
.++|+||.+++..
T Consensus 84 ~~~d~vi~~~g~~ 96 (251)
T PLN00141 84 DDSDAVICATGFR 96 (251)
T ss_pred cCCCEEEECCCCC
Confidence 6899999887643
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.9 Score=42.63 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=34.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
.+++|.|+|+ |.+|.+++..|+..|. +|++++++++.++.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~ 43 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARAD 43 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHHH
Confidence 3467999999 9999999999998886 89999998876653
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.3 Score=41.89 Aligned_cols=48 Identities=15% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.+++.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~ 56 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKA 56 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 45678999998 9999999999998887 899999988777666666643
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.25 Score=50.68 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=52.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC--c-cccCCCcEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD--I-AMSEGSRIV 249 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd--~-eal~dADiV 249 (488)
.-..+-||+|||+|.+|+.-|...+..+ .+|.++|+|.++++. ..|+. ........++. . ++++.||+|
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~-ldd~f-----~~rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQ-LDDLF-----GGRVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhh-hhHhh-----CceeEEEEcCHHHHHHHhhhccEE
Confidence 4456789999999999987666544333 489999999998873 33332 12223334443 3 689999999
Q ss_pred EEecccc
Q psy12825 250 IITAGVR 256 (488)
Q Consensus 250 Iitag~~ 256 (488)
|-++-+|
T Consensus 236 IgaVLIp 242 (371)
T COG0686 236 IGAVLIP 242 (371)
T ss_pred EEEEEec
Confidence 9987544
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=2.6 Score=40.81 Aligned_cols=114 Identities=8% Similarity=0.040 Sum_probs=68.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC---Cc-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS---DI----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt---d~----------- 240 (488)
+.+.+.|+|+ +.+|..++..|+..|. +|++++++++.++....++.... .. ...... |.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~---~~-~~~~~~D~~~~~~~~~~~~~~~ 77 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT---DN-VYSFQLKDFSQESIRHLFDAIE 77 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CC-eEEEEccCCCHHHHHHHHHHHH
Confidence 4568899998 7799999999999987 89999999988877666664321 11 111111 21
Q ss_pred cccC-CCcEEEEecccccCC----CcchHh---hHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 AMSE-GSRIVIITAGVRSLV----GETRLQ---LVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 eal~-dADiVIitag~~~k~----G~~r~d---ll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+. .-|++|..+|....+ ..+..+ .+..|. .+.+.+.+.+.+....+.|++++.
T Consensus 78 ~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 78 QQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred HHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1234 689999998643221 112222 222232 234455566655444566777764
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.039 Score=57.11 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=29.6
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD 163 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~ 163 (488)
||+|||+ |.||.++||++..+++++ |++++|.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 7999999 999999999999999996 6999984
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.38 Score=47.95 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=65.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHH-HHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC--CcE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRC-KGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG--SRI 248 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l-~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d--ADi 248 (488)
||.|+|+ |.+|..++..|+..+...+|+++|...... .....++... ....+... +|+ +.+++ +|+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 76 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN----PRYRFVKGDIGDRELVSRLFTEHQPDA 76 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC----CCcEEEEcCCcCHHHHHHHHhhcCCCE
Confidence 6899999 999999999998876434888888632111 1111122110 11122211 122 24555 899
Q ss_pred EEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++.... .......++..|+.-...+++.+.+...+..++.+|
T Consensus 77 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 77 VVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred EEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 9999864321 112233456778888888888887764444556554
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.1 Score=38.23 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=42.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|.|||+|.+|..-+..|+..|- +|+++....+..+ +. .+.. ...+ +++.++|+||.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA--~v~vis~~~~~~~-------~~------i~~~-~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGA--KVTVISPEIEFSE-------GL------IQLI-RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTB--EEEEEESSEHHHH-------TS------CEEE-ESS-GGGCTTESEEEE-S
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCchhhhh-------hH------HHHH-hhhHHHHHhhheEEEecC
Confidence 356899999999999988888887775 8999998751111 11 1222 1233 5799999999885
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.58 Score=46.08 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEE-cCCc----cccCC
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIES-GSDI----AMSEG 245 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~-ttd~----eal~d 245 (488)
+.++.+++.|+|| |.+|..++..|+..|. +|++++.+. +.++. .. +. ....+.. .+|. +.+..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~---~~-~~----~~~~~~~D~~~~~~~~~~~~~ 79 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES---ND-ES----PNEWIKWECGKEESLDKQLAS 79 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh---hc-cC----CCeEEEeeCCCHHHHHHhcCC
Confidence 3445678999999 8999999999999886 899999876 22211 11 10 0111111 1222 24678
Q ss_pred CcEEEEecccccCCCcch---HhhHhhhHH----HHHHHHHHHhc
Q psy12825 246 SRIVIITAGVRSLVGETR---LQLVDRNVK----IFKDLIPKIAK 283 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r---~dll~~N~~----ii~ei~~~I~~ 283 (488)
.|++|.++|.......+. .+.+..|+. +.+.+.+.+.+
T Consensus 80 iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 80 LDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred CCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999998643222222 234555654 44555555543
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.66 Score=49.45 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=62.5
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhH-HHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDR-CKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~-l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
||.|||.|..|.++|..|...|. +|...|.+... .......+... ....+....+.+.+.++|+||.+.+++.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~----~gi~~~~g~~~~~~~~~d~vv~sp~i~~ 74 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLN----EGSVLHTGLHLEDLNNADLVVKSPGIPP 74 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhc----cCcEEEecCchHHhccCCEEEECCCCCC
Confidence 68999999999999998888887 89999975431 11100112111 0123332234456889999999988764
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.. .........+++++.+. +.+.+.. +..+|-+|-...
T Consensus 75 ~~-p~~~~a~~~~i~i~~~~-e~~~~~~-~~~~I~VTGT~G 112 (433)
T TIGR01087 75 DH-PLVQAAAKRGIPVVGDI-ELFLRLV-PLPVVAITGTNG 112 (433)
T ss_pred CC-HHHHHHHHCCCcEEEHH-HHHHhhc-CCCEEEEECCCC
Confidence 31 12222234555655432 2222222 233566665543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.7 Score=42.92 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=66.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++++++ +.++....++.+.. ........ +|.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHH
Confidence 45568999999 9999999999999886 89999998 66666666665321 01111111 1211
Q ss_pred -ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.....+ .+. ...+..|+. +.+.+.+.+.+. .+.||+++-
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS 141 (272)
T PRK08589 78 EQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS 141 (272)
T ss_pred HHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence 2345799999998643211 111 122333433 345555555443 256776664
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.9 Score=41.65 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=38.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+.++|.|+|+ |.+|..++..|+..|. +|++.+++++.++....++.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESLG 49 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHHH
Confidence 4578999999 9999999999999887 89999998887776666664
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=2.4 Score=41.41 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=50.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM--------- 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea--------- 242 (488)
+.++|.|+|+ |.+|..++..|+.+|. +|++++++++.++....++.. .....+ ...| .+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~-~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY----PGRHRW-VVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc----CCceEE-EEccCCCHHHHHHHHHHHH
Confidence 4578999998 9999999999999886 899999998877655545421 111111 1122 211
Q ss_pred -cCCCcEEEEecccc
Q psy12825 243 -SEGSRIVIITAGVR 256 (488)
Q Consensus 243 -l~dADiVIitag~~ 256 (488)
+...|+||.+++..
T Consensus 77 ~~~~id~lv~~ag~~ 91 (263)
T PRK09072 77 EMGGINVLINNAGVN 91 (263)
T ss_pred hcCCCCEEEECCCCC
Confidence 35679999998764
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.93 Score=49.44 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
.....||.|+|+|..|.+.+..|...|. ++..+|.+++.++ .+.+. ...+....+ .+.++++|+||.+
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~--~v~~~D~~~~~~~----~l~~~-----g~~~~~~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALR----PHAER-----GVATVSTSDAVQQIADYALVVTS 77 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHH----HHHhC-----CCEEEcCcchHhHhhcCCEEEEC
Confidence 3356799999999999998877777775 8999997655432 12221 112222222 3557899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLI 278 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~ 278 (488)
.|+|... ......-..+++++.++-
T Consensus 78 pGi~~~~-p~~~~a~~~gi~v~~~ie 102 (488)
T PRK03369 78 PGFRPTA-PVLAAAAAAGVPIWGDVE 102 (488)
T ss_pred CCCCCCC-HHHHHHHHCCCcEeeHHH
Confidence 8877432 111111234556654433
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.4 Score=42.56 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=48.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccC-CCcEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSE-GSRIV 249 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~-dADiV 249 (488)
++|.|+|+ |.+|..++..|+..|. ++++.+.+++.++....+.... .....+... +|. .++. +.|+|
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR---GLALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 47999999 9999999999999886 7888998876555433332221 111122111 222 1233 89999
Q ss_pred EEecccc
Q psy12825 250 IITAGVR 256 (488)
Q Consensus 250 Iitag~~ 256 (488)
|.+++..
T Consensus 78 i~~ag~~ 84 (257)
T PRK09291 78 LNNAGIG 84 (257)
T ss_pred EECCCcC
Confidence 9998764
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.71 Score=43.69 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=45.8
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----ccc---CCC
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMS---EGS 246 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal---~dA 246 (488)
+++|.|+|+ |.+|..++..|+.+ . +|++++++.+.++....++.+ ..+... +|+ +.+ .+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERLDELAAELPG-------ATPFPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHHHHHHHHhcc-------ceEEecCCCCHHHHHHHHHhcCCC
Confidence 468999998 99999999999887 4 799999987655433222211 111111 122 222 269
Q ss_pred cEEEEecccc
Q psy12825 247 RIVIITAGVR 256 (488)
Q Consensus 247 DiVIitag~~ 256 (488)
|+||.+++..
T Consensus 73 d~vi~~ag~~ 82 (227)
T PRK08219 73 DVLVHNAGVA 82 (227)
T ss_pred CEEEECCCcC
Confidence 9999998764
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=4.3 Score=39.72 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
++.+++.|+|+ |.+|..++..|+..|. ++++.|.+++.++....++.... .++. ...| .
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG-----IEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 34578999998 9999999999998886 79999998887776665654321 1111 1112 1
Q ss_pred --cccCCCcEEEEecccccC-C-Cc-ch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 241 --AMSEGSRIVIITAGVRSL-V-GE-TR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 241 --eal~dADiVIitag~~~k-~-G~-~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+.+...|++|.+++.... + .. +. ...+..|.. +.+.+.+.+.+ ...+.+|+++...
T Consensus 81 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~ 148 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM 148 (265)
T ss_pred HHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence 123457999999886421 1 11 11 122334433 33444444443 2345677766543
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.041 Score=56.04 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=29.2
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|.||.++|+.+..+++. |++++|
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEE
Confidence 5999999999999999999999988 999988
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.45 Score=48.34 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=42.8
Q ss_pred CCCCCceEEEEeccc-chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQ-VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~-vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIi 251 (488)
-..+.++|+|||+|. +|..+++.|+..+. +|.+++.... ++. +.+++||+||.
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~t~-------~L~-----------------~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSRTQ-------NLP-----------------ELVKQADIIVG 208 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCCch-------hHH-----------------HHhccCCEEEE
Confidence 356778999999986 99999999988876 8999886321 111 23479999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+.|
T Consensus 209 AtG 211 (283)
T PRK14192 209 AVG 211 (283)
T ss_pred ccC
Confidence 986
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.57 Score=50.08 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC-CCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE-GSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~-dADiVIita 253 (488)
+.++|.|+|+|.+|.+.+..|+..|. +|.+.|.+..........+... ..++....+..+ +. ++|+||.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~-----g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEE-----GIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhc-----CCEEEeCCCCHHHhcCcCCEEEECC
Confidence 45789999999999999999988887 8999998654333233334331 122322223333 34 499999998
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
|++.
T Consensus 77 gi~~ 80 (447)
T PRK02472 77 GIPY 80 (447)
T ss_pred CCCC
Confidence 8764
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.73 Score=46.24 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIitag 254 (488)
++||+|||+|.||..++..+...... ++ .+++.+.. .+.....+. . .+..++|++++ .+.|+||++.+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~-~l~~v~~~~~~-~~~~~~~~~------~--~~~~~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDL-RVDWVIVPEHS-IDAVRRALG------E--AVRVVSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCc-eEEEEEEcCCC-HHHHhhhhc------c--CCeeeCCHHHhccCCCEEEECCC
Confidence 47999999999999998887765322 33 23343221 111111111 0 23345677665 56999999963
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.37 Score=57.06 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=49.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCC------------eEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCcc-
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYS------------NFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDIA- 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~------------el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~e- 241 (488)
+++||+|||||.||...+..|+...-.. .|.+.|++.++++..+..+... ..+.. .+|++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~------~~v~lDv~D~e~ 641 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA------EAVQLDVSDSES 641 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC------ceEEeecCCHHH
Confidence 4679999999999999999998653211 4889999988776554433211 11222 24542
Q ss_pred ---ccCCCcEEEEecc
Q psy12825 242 ---MSEGSRIVIITAG 254 (488)
Q Consensus 242 ---al~dADiVIitag 254 (488)
.++++|+||++..
T Consensus 642 L~~~v~~~DaVIsalP 657 (1042)
T PLN02819 642 LLKYVSQVDVVISLLP 657 (1042)
T ss_pred HHHhhcCCCEEEECCC
Confidence 3578999999964
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=2.2 Score=41.03 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+.++|.|+|+ |.+|..++..|+..|. +|++++.+.+.++....++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAI 49 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHH
Confidence 4578999999 9999999999999886 8999999887666544444
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=2.7 Score=40.98 Aligned_cols=115 Identities=11% Similarity=0.213 Sum_probs=66.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----------ccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----------AMS 243 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----------eal 243 (488)
|.+.|+|+ +.+|..++..|+ ++ ..|++.++++++++....++.... ......... +|. +.+
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g--~~Vil~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 75 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG--EDVVLAARRPEAAQGLASDLRQRG--ATSVHVLSFDAQDLDTHRELVKQTQELA 75 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC--CEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEcccCCHHHHHHHHHHHHHhc
Confidence 35789999 889999999988 45 489999999988887777775431 000111111 121 123
Q ss_pred CCCcEEEEecccccCCC---cch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 244 EGSRIVIITAGVRSLVG---ETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 244 ~dADiVIitag~~~k~G---~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
..-|++|..+|...... .+. .+.+.-|. .+.+.+.+.+.+...++.||+++--.
T Consensus 76 g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~ 139 (246)
T PRK05599 76 GEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA 139 (246)
T ss_pred CCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 56899999988643211 111 12222232 23344555565544456677776543
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.7 Score=42.14 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=39.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|+ |.+|..++..|+..|. .|+++|++.+.++....++.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~ 54 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVA 54 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence 34568999998 9999999999998886 899999988877766666654
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.6 Score=45.19 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=76.5
Q ss_pred CcEEEEecch-hHHHHH-HHH-HhhhhHHHHHHHHHHH-HhhhCC-------CCCCCCceEEEEecccchHHHHHHHHHc
Q psy12825 131 QKITVVGAGQ-VGMACT-YSI-LTQTMARDAVSTVDRL-LSQVAP-------SIESPDQKITVVGAGQVGMACTYSILTQ 199 (488)
Q Consensus 131 ~ki~vvg~g~-vg~~~a-~~~-~~k~la~eivlid~~~-~~e~~~-------~~~~~~~KIaIIGAG~vG~~ia~~La~~ 199 (488)
..|.|..+.. ..-++| |++ ++-.+++.+...+... .++... ......++|+|||.|.+|..++..+. .
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~-~ 166 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAH-F 166 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHH-h
Confidence 3555544332 233444 333 2235777777766443 222211 02456789999999999999998764 3
Q ss_pred CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHH
Q psy12825 200 GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLI 278 (488)
Q Consensus 200 ~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~ 278 (488)
++.-+|+.+|...... ...+. .+.. .++ +.++.||+|++..... .+|-.++- .
T Consensus 167 ~fgm~V~~~~~~~~~~--~~~~~----------~~~~-~~l~ell~~sDvv~lh~plt-----------~~T~~li~--~ 220 (323)
T PRK15409 167 GFNMPILYNARRHHKE--AEERF----------NARY-CDLDTLLQESDFVCIILPLT-----------DETHHLFG--A 220 (323)
T ss_pred cCCCEEEEECCCCchh--hHHhc----------CcEe-cCHHHHHHhCCEEEEeCCCC-----------hHHhhccC--H
Confidence 4444888888753211 00000 1112 255 4589999999985211 11112221 2
Q ss_pred HHHhccCCCcEEEEEeC
Q psy12825 279 PKIAKGSPDCILLIISN 295 (488)
Q Consensus 279 ~~I~~~~p~a~vIv~TN 295 (488)
+.++...|++++||++-
T Consensus 221 ~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 221 EQFAKMKSSAIFINAGR 237 (323)
T ss_pred HHHhcCCCCeEEEECCC
Confidence 23444568999999874
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.2 Score=50.27 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------cc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------AM 242 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------ea 242 (488)
+..+.+||.|+|| |.+|++++..|+.. +. +|+.+|++...... +... ...++.. .|. ++
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~~----~~~~----~~~~~~~-gDl~d~~~~l~~~ 379 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAISR----FLGH----PRFHFVE-GDISIHSEWIEYH 379 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhhh----hcCC----CceEEEe-ccccCcHHHHHHH
Confidence 5567889999998 99999999999875 55 89999986543211 1100 0112211 121 24
Q ss_pred cCCCcEEEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++++|+||-+++.... ......+++..|+.-...+.+.+.++. . .+|++|
T Consensus 380 l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~S 431 (660)
T PRK08125 380 IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPS 431 (660)
T ss_pred hcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEc
Confidence 7899999998764321 122344566778887788888888765 3 344444
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.39 Score=50.07 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=55.0
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-CCCCCCcEEEcCC-cccc--CCCcEEEEecc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-PFLRSPKIESGSD-IAMS--EGSRIVIITAG 254 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-~~~~~~~v~~ttd-~eal--~dADiVIitag 254 (488)
+|+|+|+|++|...+..+...| ..+|++.|+++++++- +..+.-.. ....... ..... ++.. .++|++|++.|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~-A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLEL-AKEAGGADVVVNPSED-DAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHH-HHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEEEECCC
Confidence 8999999999986544443344 4689999999999874 43422110 0000000 00000 0122 46999999986
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+ + .+-..++-..|.+.+++++-+
T Consensus 248 ~~---------------~---~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 SP---------------P---ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CH---------------H---HHHHHHHHhcCCCEEEEEecc
Confidence 22 1 223334444567777777655
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.3 Score=51.15 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
+.+||.|+|+ |.+|+.++..|...|. +|+.+|+..... . ... .+ ...+... +|. +.++++|+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~~---~---~~~-~~--~~~~~~~Dl~d~~~~~~~~~~~D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNEH---M---SED-MF--CHEFHLVDLRVMENCLKVTKGVDH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccccc---c---ccc-cc--cceEEECCCCCHHHHHHHHhCCCE
Confidence 5689999999 9999999999998886 899999753211 0 000 00 0112111 121 24678999
Q ss_pred EEEecccccCCC---cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVG---ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G---~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||-+++.....+ ......+..|+.....+.+.+.+..... +|++|
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~S 136 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYAS 136 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence 999986321111 1123345678888888888877765444 44444
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.90 E-value=3.4 Score=43.84 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=37.5
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d 221 (488)
...|.|||.|.||+.++.+++.+|+ .|..|++..++.+....+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~--~VavyNRt~~ktd~f~~~ 45 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGY--TVAVYNRTTEKTDEFLAE 45 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCc--eEEEEeCCHHHHHHHHHh
Confidence 4579999999999999999999998 899999999888765443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.38 Score=50.85 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIit 252 (488)
....++|+|||.|.||+.++..+..-|. +|..+|.... +. .. .. ...+++ .++.||+|++.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~--~V~~~dp~~~--~~-----~~--------~~-~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI--KTLLCDPPRA--DR-----GD--------EG-DFRSLDELVQEADILTFH 174 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCccc--cc-----cc--------cc-ccCCHHHHHhhCCEEEEe
Confidence 4577899999999999999998876565 8999996321 00 00 00 113454 47899999987
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 175 ~ 175 (378)
T PRK15438 175 T 175 (378)
T ss_pred C
Confidence 5
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.59 Score=49.62 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=74.4
Q ss_pred hHHHHH-HHHH-hhhhHHHHHHHHHHHH-hhhC---C----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 141 VGMACT-YSIL-TQTMARDAVSTVDRLL-SQVA---P----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 141 vg~~~a-~~~~-~k~la~eivlid~~~~-~e~~---~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
.+.+.| |++. +-.+++.+...++... ++.. . ......++|+|||.|.+|+.+|..+.. ++.-+|..||.
T Consensus 119 ~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~-~fGm~V~~~d~ 197 (386)
T PLN02306 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDL 197 (386)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECC
Confidence 344444 3332 2456777766654422 1110 0 034567899999999999999887642 34348999998
Q ss_pred ChhH-HHHHHHHHhhcC-C-CCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC
Q psy12825 211 NEDR-CKGEMLDLQHGA-P-FLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP 286 (488)
Q Consensus 211 ~~e~-l~g~~~dL~~~~-~-~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p 286 (488)
.... ............ . ......+....++ +.++.||+|++..... .++-.++- .+.++...|
T Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt-----------~~T~~lin--~~~l~~MK~ 264 (386)
T PLN02306 198 YQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD-----------KTTYHLIN--KERLALMKK 264 (386)
T ss_pred CCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC-----------hhhhhhcC--HHHHHhCCC
Confidence 6531 111111111000 0 0001112223456 4689999999975211 11222222 234445567
Q ss_pred CcEEEEEeC
Q psy12825 287 DCILLIISN 295 (488)
Q Consensus 287 ~a~vIv~TN 295 (488)
++++||++-
T Consensus 265 ga~lIN~aR 273 (386)
T PLN02306 265 EAVLVNASR 273 (386)
T ss_pred CeEEEECCC
Confidence 899999873
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.47 Score=47.24 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=63.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCC-cEEEEeccc
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGS-RIVIITAGV 255 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dA-DiVIitag~ 255 (488)
+|.|+|+ |.+|..++..|...|. +|+.+|.......... .+.. +. ...+.-.... +.+++. |.||-+++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~---~~~~-~~-~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL---SGVE-FV-VLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc---cccc-ee-eecccchHHHHHHHhcCCCEEEEcccc
Confidence 4999997 9999999999999876 8999998665433211 0000 00 0000000111 345566 999999876
Q ss_pred ccCCCcch---HhhHhhhHHHHHHHHHHHhc
Q psy12825 256 RSLVGETR---LQLVDRNVKIFKDLIPKIAK 283 (488)
Q Consensus 256 ~~k~G~~r---~dll~~N~~ii~ei~~~I~~ 283 (488)
...++..+ .++...|+.-.+.+.+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 54443322 35778899999999999888
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.72 E-value=2.7 Score=39.93 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=46.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e-------- 241 (488)
+++++|.|+|| |.+|..++..|+.++. ++++... +.+..+....++.... ....+. ..|. +
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~D~~~~~~v~~~~~~ 77 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG---RRAQAV-QADVTDKAALEAAVAA 77 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC---CceEEE-ECCcCCHHHHHHHHHH
Confidence 45679999999 9999999999999887 6555444 4444443333443211 111111 1222 1
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+.+.|+||.+++..
T Consensus 78 ~~~~~~~id~vi~~ag~~ 95 (249)
T PRK12825 78 AVERFGRIDILVNNAGIF 95 (249)
T ss_pred HHHHcCCCCEEEECCccC
Confidence 124679999998753
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=3.5 Score=41.44 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=64.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEEEcCCc-----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIESGSDI----------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~~ttd~----------- 240 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.+.+.+ .++.....+.... ... .....|.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG---RKA-VALPGDLKDEAFCRQLVE 126 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC---CeE-EEEecCCCCHHHHHHHHH
Confidence 44578999998 9999999999999886 7888776432 2333333343211 011 1111221
Q ss_pred ---cccCCCcEEEEeccccc--CC--Ccc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 241 ---AMSEGSRIVIITAGVRS--LV--GET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 241 ---eal~dADiVIitag~~~--k~--G~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
+.+...|++|..++... .+ ..+ -...+..|+.-...+.+.+..+ .+.+.+|+++-
T Consensus 127 ~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 127 RAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 12346899999998642 11 112 2334556655444444444433 23455666653
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.05 Score=56.24 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=30.0
Q ss_pred cEEEEec-chhHHHHHHHHHhhhhHHH-----HHHHHH
Q psy12825 132 KITVVGA-GQVGMACTYSILTQTMARD-----AVSTVD 163 (488)
Q Consensus 132 ki~vvg~-g~vg~~~a~~~~~k~la~e-----ivlid~ 163 (488)
||+|+|+ |.||.++||++..+++++| ++++|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di 39 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDI 39 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEec
Confidence 8999999 9999999999999999996 999884
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.9 Score=38.49 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=38.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+.+++.|+|+ |.+|..++..|+..|. .|+++|.++++++....++.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 4568999998 9999999999998886 79999999877766555554
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=3.3 Score=40.18 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|| |.+|..++..|+.+|. ++++.+.+++.+ ....++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~-~~~~~~~ 51 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDD-EFAEELR 51 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhH-HHHHHHH
Confidence 45678999998 9999999999999886 788999887665 3445554
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.66 Score=45.87 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=63.1
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------c
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA-----------M 242 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e-----------a 242 (488)
.++|.|+|| |.+|..++..|+.++. +|++.+.+.+.++.....+... ..+... +|.+ .
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~D~~~~~~~~~~~~~~~~~ 74 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD--RVVATARDTATLADLAEKYGDR------LLPLALDVTDRAAVFAAVETAVEH 74 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhccCC------eeEEEccCCCHHHHHHHHHHHHHH
Confidence 457999998 9999999999998886 8999999887665432222110 111100 1211 1
Q ss_pred cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|.||.++|...... .+ -.+.+..|+. +.+.+.+.+++.... .+|+++
T Consensus 75 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 75 FGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred cCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 346799999998653211 11 2233445544 345555555554444 355554
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.75 Score=44.75 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=70.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.+.+||+|||+|.+|.-=+..|+..|- +|+++-... +.+.....+-. ..-+...-+.+.+.++++||.+.
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga--~v~Vvs~~~~~el~~~~~~~~-------i~~~~~~~~~~~~~~~~lviaAt 80 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGA--DVTVVSPEFEPELKALIEEGK-------IKWIEREFDAEDLDDAFLVIAAT 80 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCC--EEEEEcCCccHHHHHHHHhcC-------cchhhcccChhhhcCceEEEEeC
Confidence 457899999999999988888888875 777776544 22222211111 11122222446788899999985
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCc--hhHHHHHHHhcCCCCCcEEeecCChHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPV--DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVL 330 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPv--di~t~~~~k~sg~p~~rViG~gt~lds~R~~~~ 330 (488)
.|-++=+.+++..++++ +.+|+ ..|. |.+.-...+..+ -.|++.|.--+-.+-+.
T Consensus 81 ---------------~d~~ln~~i~~~a~~~~---i~vNv~D~p~~~~f~~Pa~~~r~~----l~iaIsT~G~sP~la~~ 138 (210)
T COG1648 81 ---------------DDEELNERIAKAARERR---ILVNVVDDPELCDFIFPAIVDRGP----LQIAISTGGKSPVLARL 138 (210)
T ss_pred ---------------CCHHHHHHHHHHHHHhC---CceeccCCcccCceecceeeccCC----eEEEEECCCCChHHHHH
Confidence 23334445555555543 23333 3453 443333323222 35666665544344444
Q ss_pred HHHHh
Q psy12825 331 LAQKL 335 (488)
Q Consensus 331 lA~~L 335 (488)
+-+++
T Consensus 139 ir~~I 143 (210)
T COG1648 139 LREKI 143 (210)
T ss_pred HHHHH
Confidence 43333
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=3.8 Score=39.70 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=34.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~ 223 (488)
+.+++.|+|+ |.+|.+++..|+..|. +|++.+ .+.+.++....++.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~ 50 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQ 50 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHH
Confidence 4568899998 9999999999999886 787765 45565655555554
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.7 Score=39.63 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=38.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
.+.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~ 54 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQ 54 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence 34568999999 9999999999998886 79999998877765555554
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.34 Score=49.68 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=45.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
-....++|+|||. |.||..++..|..++. +|.+++.... ++ +..+.||+||
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t~-------------------------~l~e~~~~ADIVI 207 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRST-------------------------DAKALCRQADIVV 207 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCCC-------------------------CHHHHHhcCCEEE
Confidence 4567899999999 5999999999998887 8899875432 33 3467999999
Q ss_pred Eecccc
Q psy12825 251 ITAGVR 256 (488)
Q Consensus 251 itag~~ 256 (488)
.+.|.+
T Consensus 208 savg~~ 213 (301)
T PRK14194 208 AAVGRP 213 (301)
T ss_pred EecCCh
Confidence 998654
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.56 Score=49.38 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=45.1
Q ss_pred ceEEEEec-ccchHHHHHHHH-HcCCC-CeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSIL-TQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La-~~~l~-~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
+||+|+|| |.||+.+...|. ...+. .+++++.... ..+... .+.. ...+...++.+++.+.|+|++++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~--s~g~~~------~f~~~~~~v~~~~~~~~~~~vDivffa~ 72 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ--LGQAAP------SFGGTTGTLQDAFDIDALKALDIIITCQ 72 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh--hCCCcC------CCCCCcceEEcCcccccccCCCEEEEcC
Confidence 48999999 999999888887 55553 6888887542 222211 1211 12333333335899999999997
Q ss_pred c
Q psy12825 254 G 254 (488)
Q Consensus 254 g 254 (488)
+
T Consensus 73 g 73 (366)
T TIGR01745 73 G 73 (366)
T ss_pred C
Confidence 5
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.52 E-value=4.6 Score=38.87 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
++.++|.|+|| |.+|.+++..|+..|. +|++++.+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence 45678999999 9999999999999887 899999864
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.69 Score=49.94 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHH-HHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRC-KGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l-~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIita 253 (488)
..+||.|+|.|..|.+++..|...|. +|..+|.++... .....++... ...+....+ .+.+.++|+||.+.
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL-----GVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC-----CCEEEeCCCChHHhccCCEEEECC
Confidence 45799999999999999988888887 899999864311 1112233321 123333333 35578999999998
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWK 306 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k 306 (488)
+++... .........+++++.++- .+-++. +..+|-+|-... ++++++..
T Consensus 86 gi~~~~-p~~~~a~~~~i~i~s~~e-~~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 86 SMRIDS-PELVKAKEEGAYITSEME-EFIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CCCCCc-hHHHHHHHcCCcEEechH-Hhhhhc-CCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 776432 112222345666665442 222232 233566665544 55555543
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.48 E-value=2.8 Score=40.09 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=35.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQH 224 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~ 224 (488)
+.++|.|+|+ |.+|.+++..|+..+. +|++++.+ ++.++....++.+
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~ 53 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNA 53 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHh
Confidence 4468999999 9999999999998886 89999974 4445544444543
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.1 Score=48.47 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+.+||.|+|.|.-|.+.+..|. .|. ++.++|.+++.... ..++.+. .+....+.+.+.++|+||.+.|
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~--~v~v~D~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~d~vV~SPg 72 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKY--DVIVYDDLKANRDI-FEELYSK-------NAIAALSDSRWQNLDKIVLSPG 72 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCC--EEEEECCCCCchHH-HHhhhcC-------ceeccCChhHhhCCCEEEECCC
Confidence 34679999999999999888877 454 89999965432221 1222111 1111112245778999999988
Q ss_pred cccCCCcchHhhHhhhHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKD 276 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~e 276 (488)
++... .........+++++.+
T Consensus 73 I~~~~-p~~~~a~~~gi~v~~e 93 (454)
T PRK01368 73 IPLTH-EIVKIAKNFNIPITSD 93 (454)
T ss_pred CCCCC-HHHHHHHHCCCceecH
Confidence 77421 1122223456666543
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.61 Score=38.33 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
...+.++++|+|+|.+|..++..+...+ ..+|.++|+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 3456679999999999999999988875 358999987
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.1 Score=51.16 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
+..||.|+|+| +|+.++..|+..|++++|.|+|-
T Consensus 106 ~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~ 139 (722)
T PRK07877 106 GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF 139 (722)
T ss_pred hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC
Confidence 34699999998 89999999999997679999986
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.22 Score=52.36 Aligned_cols=33 Identities=27% Similarity=0.623 Sum_probs=30.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.||+|||+|.+|.++|+.|+..+. +|+++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~--~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY--QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 599999999999999999999876 899999864
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.9 Score=42.47 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=39.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+.++|+|||.|+-|...|.+|-..|+ +|.+-......-...+ -++. | + ..+. |+.+.||+|++..
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A--~~~G--f----~---v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV--NVIVGLREGSASWEKA--KADG--F----E---VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHH--HHTT-------E---CCEHHHHHHC-SEEEE-S
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHH--HHCC--C----e---eccHHHHHhhCCEEEEeC
Confidence 56899999999999999999988888 7776666443111111 1111 1 1 1233 7899999999985
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=4.1 Score=39.34 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+.+|. ++.+. +.+.+.++....++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~ 52 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIE 52 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence 34578999998 9999999999998886 66664 566665555444443
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=3.1 Score=39.79 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEE-cCCc-------c----
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIES-GSDI-------A---- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~-------e---- 241 (488)
+.++|.|+|+ |.+|+.++..|+.+|. +++++..+ +...+....++.... .++.. ..|. +
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG-----GRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHH
Confidence 4578999998 9999999999999987 67777653 333444444443321 11111 1221 1
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+.+.|+||..+|..
T Consensus 77 ~~~~~~~id~vi~~ag~~ 94 (245)
T PRK12937 77 AETAFGRIDVLVNNAGVM 94 (245)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 134689999998864
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.63 Score=46.07 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=58.6
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCC--CcEEEEecc
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEG--SRIVIITAG 254 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~d--ADiVIitag 254 (488)
||.|+|+ |.+|++++..|...|. +|++++... .|+.+. .+. +.+++ .|+||.+++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-------~d~~~~------------~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-------LDLTDP------------EALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-------cCCCCH------------HHHHHHHHhCCCCEEEECCc
Confidence 6899998 9999999999998876 888887641 111100 011 23444 499999887
Q ss_pred cccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 255 VRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 255 ~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
...... ......+..|+.....+++.+.+... .+|++|
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 542211 12344566777777888877766543 344444
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.2 Score=40.32 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|+ |.+|..++..|+..|. ++++.|.+.+.++....++.+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~ 57 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQ 57 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHh
Confidence 34678999998 9999999999998886 899999988877766666654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=3.6 Score=40.53 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=62.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------cc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA-----------MS 243 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e-----------al 243 (488)
++|.|+|+ |.+|..++..|+..|. .|.+++.+++.++........ ...+... +|.+ .+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALDDLKARYGD------RLWVLQLDVTDSAAVRAVVDRAFAAL 74 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccC------ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57999998 9999999999998886 799999987765543222111 1111111 1221 13
Q ss_pred CCCcEEEEecccccCCC-c--ch---HhhHhhhHHHHHHHHHHH----hccCCCcEEEEEe
Q psy12825 244 EGSRIVIITAGVRSLVG-E--TR---LQLVDRNVKIFKDLIPKI----AKGSPDCILLIIS 294 (488)
Q Consensus 244 ~dADiVIitag~~~k~G-~--~r---~dll~~N~~ii~ei~~~I----~~~~p~a~vIv~T 294 (488)
.+.|+||.++|...... . +. ...+..|+.-...+.+.+ ++... ..+|+++
T Consensus 75 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~s 134 (276)
T PRK06482 75 GRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG-GRIVQVS 134 (276)
T ss_pred CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEc
Confidence 45799999988653211 1 11 233455655444444443 43333 3455554
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.74 Score=44.54 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.5
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
++|.|+|+ |.+|..++..|+.++. +|++++.++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 57999998 9999999999999886 899999876
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.3 Score=42.38 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-------ccc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-------AMS 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-------eal 243 (488)
++.++|.|+|+ |.+|..++..|+..|. ++++.+. +++.++....++. ...... +|. +.+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~l~~~~~--------~~~~~~D~~~~~~~~~~~~~~ 73 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKDAAERLAQETG--------ATAVQTDSADRDAVIDVVRKS 73 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHhC--------CeEEecCCCCHHHHHHHHHHh
Confidence 44678999998 9999999999998886 7777765 4444443322221 011110 121 123
Q ss_pred CCCcEEEEecccc
Q psy12825 244 EGSRIVIITAGVR 256 (488)
Q Consensus 244 ~dADiVIitag~~ 256 (488)
...|++|.+++..
T Consensus 74 ~~id~li~~ag~~ 86 (237)
T PRK12742 74 GALDILVVNAGIA 86 (237)
T ss_pred CCCcEEEECCCCC
Confidence 4589999998764
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.26 Score=48.51 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=32.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+..||+|+|+|.+|+.++..|+..|+ .+|+|+|.|.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 345699999999999999999999987 5899999764
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.2 Score=48.15 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=50.7
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-CccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-DIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d~eal~dADiVIitag~ 255 (488)
.+||+|+|.|.-|.+.+..|...|. ++..+|.++.. ...... ... .....+.... +.+.+.++|+||.+.|+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~--~v~v~D~~~~~-~~~~~~-~~~---~~~i~~~~g~~~~~~~~~~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGA--EVTVSDDRPAP-EGLAAQ-PLL---LEGIEVELGSHDDEDLAEFDLVVKSPGI 79 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCC--eEEEEcCCCCc-cchhhh-hhh---ccCceeecCccchhccccCCEEEECCCC
Confidence 7899999999999999999988886 89999987654 211111 100 0111222211 12678999999999887
Q ss_pred ccC
Q psy12825 256 RSL 258 (488)
Q Consensus 256 ~~k 258 (488)
|..
T Consensus 80 ~~~ 82 (448)
T COG0771 80 PPT 82 (448)
T ss_pred CCC
Confidence 643
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=4.4 Score=39.34 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=32.6
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|+++|+++.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~ 43 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSEL 43 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchH
Confidence 355678999999 9999999999999986 8999999753
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.7 Score=39.33 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE----cCCccccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES----GSDIAMSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~----ttd~eal~dADiVIi 251 (488)
+.+||.+||+| -|..++..|...|. +|+.+|++++..+....... .+.. ..+.+=.++||+|..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~~---------~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLGL---------NAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhCC---------eEEECcCCCCCHHHHhcCCEEEE
Confidence 34799999999 68888888887776 99999999986653221111 1111 122345789998877
Q ss_pred e
Q psy12825 252 T 252 (488)
Q Consensus 252 t 252 (488)
.
T Consensus 84 i 84 (134)
T PRK04148 84 I 84 (134)
T ss_pred e
Confidence 6
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.79 Score=50.66 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc--ccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA--MSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e--al~dADiVIit 252 (488)
.+.+++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+..+.. ......+.. ...++|+||.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~--~V~i~nR~~e~a~~la~~l~~--------~~~~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA--RVVIANRTYERAKELADAVGG--------QALTLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC--------ceeeHhHhhhhccccCeEEEec
Confidence 445789999999999999999999886 899999998877765544321 112122322 12467888887
Q ss_pred cccc
Q psy12825 253 AGVR 256 (488)
Q Consensus 253 ag~~ 256 (488)
....
T Consensus 447 T~vG 450 (529)
T PLN02520 447 TSVG 450 (529)
T ss_pred ccCC
Confidence 6433
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.27 Score=51.41 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.|+.++|+|||||..|.+.|..|+..|+ +++++|..+
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~--~v~v~E~~~ 39 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGW--DVDVFERSP 39 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence 3667899999999999999999999987 899999865
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.27 Score=51.69 Aligned_cols=34 Identities=21% Similarity=0.535 Sum_probs=30.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
|+|+|||||.+|.++|+.|+..+. +|+|+|.+..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~--~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH--EVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCCc
Confidence 589999999999999999999887 8999998653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=4 Score=40.96 Aligned_cols=116 Identities=10% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh-HHHHHHHHHhhcCCCCCCCcEE-EcCCc---c------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED-RCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------ 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e-~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------ 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++++++.+ .++.....+... ..++. ...|. +
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE-----GVKCLLIPGDVSDEAFCKDAV 115 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHH
Confidence 344578999998 9999999999999886 8999998753 333333333321 11211 11221 1
Q ss_pred -----ccCCCcEEEEecccccC--C--Ccch---HhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 242 -----MSEGSRIVIITAGVRSL--V--GETR---LQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 242 -----al~dADiVIitag~~~k--~--G~~r---~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
.+...|+||.+++.... + ..+. ...+..|+.-...+.+.+.++ .+.+.+|+++.-
T Consensus 116 ~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~ 183 (290)
T PRK06701 116 EETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI 183 (290)
T ss_pred HHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence 12357999999875321 1 1111 234556655555555554443 344556666643
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.3 Score=52.70 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=52.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
++..+|.|+|+|.+|..++..|+..|+ +.|.|+|-+. .+++.....|+... +..+|.
T Consensus 22 L~~s~VLIiG~gGLG~EiaKnL~laGV-g~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLN---p~V~V~ 97 (1008)
T TIGR01408 22 MAKSNVLISGMGGLGLEIAKNLVLAGV-KSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELN---PYVHVS 97 (1008)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHC---CCceEE
Confidence 345699999999999999999999997 4899999532 24444444444432 234454
Q ss_pred EcC-Cc--cccCCCcEEEEec
Q psy12825 236 SGS-DI--AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt-d~--eal~dADiVIita 253 (488)
..+ .. +-+++.|+||.+.
T Consensus 98 ~~~~~l~~e~l~~fdvVV~t~ 118 (1008)
T TIGR01408 98 SSSVPFNEEFLDKFQCVVLTE 118 (1008)
T ss_pred EecccCCHHHHcCCCEEEECC
Confidence 432 22 4588999999984
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.4 Score=38.63 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=29.4
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhH
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDR 214 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~ 214 (488)
||+|||+|.+|.-+|..|...+. +++|++..+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~--~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK--EVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS--EEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc--EEEEEeccchh
Confidence 68999999999999999988775 99999985543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.3 Score=51.68 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=31.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
..||+|||+|.+|+.++..|+..|+ .+|+|+|-|.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCE
Confidence 4599999999999999999999986 5999999753
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.72 Score=44.87 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=35.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~ 46 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADAL 46 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence 47999999 9999999999998876 8999999887776555444
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.59 E-value=4 Score=39.25 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=49.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----------- 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----------- 241 (488)
++|.|+|+ |.+|..++..|+.+|. +|++++++.+..+....++.... .++. ...| .+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG-----GSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHH
Confidence 47999998 9999999999998887 89999998877665554443211 1121 1112 11
Q ss_pred ccCCCcEEEEecccc
Q psy12825 242 MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 al~dADiVIitag~~ 256 (488)
.+.+.|+||..++..
T Consensus 75 ~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 75 EFGGLDILVNNAGIQ 89 (255)
T ss_pred hcCCCCEEEECCCCC
Confidence 246789999988753
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.9 Score=42.88 Aligned_cols=95 Identities=11% Similarity=0.049 Sum_probs=55.5
Q ss_pred chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCC---cEEEcCCccccCCCcEEEEecccccCCCcchH
Q psy12825 188 VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP---KIESGSDIAMSEGSRIVIITAGVRSLVGETRL 264 (488)
Q Consensus 188 vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~---~v~~ttd~eal~dADiVIitag~~~k~G~~r~ 264 (488)
||..++..|...|. +|.++++. +.++.+..+=-......... .+..++|++.+.++|+||++....
T Consensus 2 iG~~~a~~L~~~G~--~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~-------- 70 (293)
T TIGR00745 2 VGSLYGAYLARAGH--DVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY-------- 70 (293)
T ss_pred chHHHHHHHHhCCC--cEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch--------
Confidence 67888999988885 89999986 33433211100000000111 223345566688999999996211
Q ss_pred hhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHH
Q psy12825 265 QLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLT 301 (488)
Q Consensus 265 dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t 301 (488)
-..++.+.+..+ .++..|+.+.|-.+...
T Consensus 71 --------~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~ 100 (293)
T TIGR00745 71 --------QTEEAAALLLPLIGKNTKVLFLQNGLGHEE 100 (293)
T ss_pred --------hHHHHHHHhHhhcCCCCEEEEccCCCCCHH
Confidence 123444455554 56788888889877543
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.7 Score=47.41 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=50.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC-CccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS-DIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt-d~eal~dADiVIita 253 (488)
++.+||.|+|.|..|.++|..|...|. +|..+|.+.... ...+|.... ...++.... +.+.+.++|+||.+.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~--~v~~~D~~~~~~--~~~~L~~~~---~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA--RLRVADTREAPP--NLAALRAEL---PDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC--EEEEEcCCCCch--hHHHHHhhc---CCcEEEeCCCchhHhcCCCEEEECC
Confidence 345789999999999998888888887 899999755321 112243321 112333322 235678999999998
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
+++.
T Consensus 78 ~I~~ 81 (498)
T PRK02006 78 GLSP 81 (498)
T ss_pred CCCC
Confidence 8765
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=5.3 Score=38.94 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=65.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcC---Ccc------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGS---DIA------ 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~tt---d~e------ 241 (488)
.++.+++.|+|+ |.+|..++..|+..+. .+++... +++.++....++.+.. .++. ... |.+
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~i~~~~ 76 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG-----GEAIAVKGDVTVESDVVNLI 76 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC-----CeEEEEEecCCCHHHHHHHH
Confidence 356679999998 9999999999999886 6777766 3444444444554321 1111 111 211
Q ss_pred -----ccCCCcEEEEecccccCC---CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRSLV---GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~---G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..++..... ..+.. ..+..|+. ..+.+.+.+.+....+.+|+++-
T Consensus 77 ~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 77 QTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 134579999998764321 11122 23445533 23445555555544556666654
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.069 Score=55.25 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=30.4
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHHH
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTVD 163 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid~ 163 (488)
-||+|+|+ |.||.+++++++.+++++ |++++|.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~ 41 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDI 41 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEc
Confidence 48999999 999999999999999996 9999984
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.32 Score=48.18 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=32.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+..||.|+|+|.+|+.++..|+..|+ .+|+|+|.|.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 345699999999999999999999986 5899999764
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.91 Score=48.88 Aligned_cols=117 Identities=20% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH-------H---------HHHHHHHhhcCCCCCCCcEE
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR-------C---------KGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~-------l---------~g~~~dL~~~~~~~~~~~v~ 235 (488)
+..+++||.|+|| |.+|++++..|+.+|. +|+++|..... + ......+.+.. .....+.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~~v 118 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS--GKEIELY 118 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh--CCcceEE
Confidence 4556789999998 9999999999999886 89998842110 0 00000111100 0011222
Q ss_pred Ec--CCc----cccC--CCcEEEEecccccCC-Cc-ch---HhhHhhhHHHHHHHHHHHhccCCCcEEEEE
Q psy12825 236 SG--SDI----AMSE--GSRIVIITAGVRSLV-GE-TR---LQLVDRNVKIFKDLIPKIAKGSPDCILLII 293 (488)
Q Consensus 236 ~t--td~----eal~--dADiVIitag~~~k~-G~-~r---~dll~~N~~ii~ei~~~I~~~~p~a~vIv~ 293 (488)
.. .|+ +.++ ++|+||-+++....+ .. +. ...+..|+.-...+.+...+++....+|.+
T Consensus 119 ~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~ 189 (442)
T PLN02572 119 VGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKL 189 (442)
T ss_pred ECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence 11 122 2344 479999987543211 11 11 223467888888888888777554344443
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.77 Score=47.13 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=43.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHH-HHHHHHhhcCCCCCCCcEEEcCCcc------ccCCCc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCK-GEMLDLQHGAPFLRSPKIESGSDIA------MSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~-g~~~dL~~~~~~~~~~~v~~ttd~e------al~dAD 247 (488)
+++.||+|||+|.+|..++..+.......=+.++|+|++... ..+..+. ... ...+++ ++.+.|
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~G--------i~~-~~~~ie~LL~~~~~~dID 72 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLG--------VAT-SAEGIDGLLAMPEFDDID 72 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcC--------CCc-ccCCHHHHHhCcCCCCCC
Confidence 467899999999999987777765433333567899876331 1122110 011 123332 357899
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
+|+++.+
T Consensus 73 iVf~AT~ 79 (302)
T PRK08300 73 IVFDATS 79 (302)
T ss_pred EEEECCC
Confidence 9999863
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.32 Score=48.00 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+..||+|+|+|.+|+.++..|+..|+ .+++|+|-+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 45699999999999999999999986 5899999754
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=4.4 Score=39.42 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=62.5
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----------- 241 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----------- 241 (488)
+++|.|+|+ |.+|..++..|+..|. +|++++ .+.+.++....++.... ....+... +|++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG---VRAEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHH
Confidence 357889998 9999999999999886 777775 45555555555554321 11111111 1221
Q ss_pred ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|+||.+++..... ..+. ...+..|.. +++...+.+.+....+.+|+++.
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 77 RLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 134579999998764321 1111 222344443 33434444433333456666665
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.91 Score=44.61 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDS 210 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di 210 (488)
...+.++|+|.|.|.||+.++..|...+. .|+ +.|.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~--~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGA--KVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECC
Confidence 34567899999999999999999988875 444 5565
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.34 Score=46.44 Aligned_cols=37 Identities=16% Similarity=0.405 Sum_probs=32.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+..||+|+|+|.+|+.++..|+..|+ .+|+++|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 345699999999999999999999997 5899999763
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=5.6 Score=39.80 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh---------hHHHHHHHHHhhcCCCCCCCcEEEcCCc----
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE---------DRCKGEMLDLQHGAPFLRSPKIESGSDI---- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~---------e~l~g~~~dL~~~~~~~~~~~v~~ttd~---- 240 (488)
++.+.+.|+|+ +.+|..++..|+..|. +|+++|.+. +.++....++.... .... ....|.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~-~~~~Dv~~~~ 77 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG---GEAV-ANGDDIADWD 77 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCCccccccccchhHHHHHHHHHHhcC---CceE-EEeCCCCCHH
Confidence 45568889998 9999999999999886 788988765 55655555554321 0011 111121
Q ss_pred ----------cccCCCcEEEEeccccc
Q psy12825 241 ----------AMSEGSRIVIITAGVRS 257 (488)
Q Consensus 241 ----------eal~dADiVIitag~~~ 257 (488)
+.+...|++|.++|...
T Consensus 78 ~v~~~~~~~~~~~g~id~lv~nAG~~~ 104 (286)
T PRK07791 78 GAANLVDAAVETFGGLDVLVNNAGILR 104 (286)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 12456899999988643
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=4 Score=39.70 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=35.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
.++.++|.|+|| |.+|..++..|+..|. .|++++.+ +.++.....+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~-~~~~~~~~~~ 58 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHG-TNWDETRRLI 58 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC-cHHHHHHHHH
Confidence 345678999999 9999999999999887 78999887 3344333334
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.36 Score=46.31 Aligned_cols=36 Identities=22% Similarity=0.515 Sum_probs=31.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+..||+|||+|.+|+.++..|+..|+ .+|.|+|-+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 34699999999999999999999997 5899999753
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=4.3 Score=39.01 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=34.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEE-EeCChhHHHHHHHHHh
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCL-IDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L-~Di~~e~l~g~~~dL~ 223 (488)
+.+++.|+|+ |.+|..++..|+..|. ++++ .+.+.+.++....++.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~ 50 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIE 50 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence 4568999999 9999999999999886 6655 4667766665555554
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.05 E-value=7.1 Score=37.97 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
++.+.+.|+|+ |.+|..++..|+..|. +|+++|.+.. +....++.... .++. ...| .
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~--~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 78 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEP--TETIEQVTALG-----RRFLSLTADLRKIDGIPALLER 78 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcch--HHHHHHHHhcC-----CeEEEEECCCCCHHHHHHHHHH
Confidence 45568889998 8999999999999886 7888887542 22233333211 1111 1112 1
Q ss_pred --cccCCCcEEEEecccccC-C--Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 --AMSEGSRIVIITAGVRSL-V--GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 --eal~dADiVIitag~~~k-~--G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+...|++|.++|.... + ..+ -.+.+..|.. +.+.+.+.+.+..+.+.+++++.
T Consensus 79 ~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 79 AVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 123468999999886431 1 111 2233445544 33444455544444566766654
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=1 Score=47.00 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=45.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh-hcC-CCC------CCCcEEEcCCcc-ccCCCc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ-HGA-PFL------RSPKIESGSDIA-MSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~-~~~-~~~------~~~~v~~ttd~e-al~dAD 247 (488)
++||+|+|+|.||..++..+....-..=+.+.|.+++.....+.... +.. .++ ....+....+++ .+.++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 46999999999999988877765433334566766544432222110 100 000 012344445554 467999
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
+||.+.+
T Consensus 81 VVIdaT~ 87 (341)
T PRK04207 81 IVVDATP 87 (341)
T ss_pred EEEECCC
Confidence 9999864
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=5.6 Score=38.89 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=38.2
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHhh
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQH 224 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~~ 224 (488)
+.++.++|.|+|| +.+|..++..|+..|. +|++.+ .+++.++....++..
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~ 55 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNSNVEEANKIAEDLEQ 55 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHH
Confidence 3456678999999 9999999999999887 777775 466666666666643
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.46 Score=46.65 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRC 215 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l 215 (488)
+.++|.|+|+ |.+|..++..|+.+|. +|++.+++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~ 41 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARA 41 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhc
Confidence 3467999998 9999999999998886 899999987544
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.75 Score=45.66 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=33.1
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
+++|.|+|| |.+|..++..|+..|. +|++.+++++.++.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVAA 43 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHH
Confidence 357899999 9999999999998886 89999998876653
|
|
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.99 Score=46.57 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=73.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC-------------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD------------- 239 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd------------- 239 (488)
...+.+.|+|+ ..+|..+|..|+.+|. +|++..+|.++.+..+.++.... ...++. ...|
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga--~Vv~~~R~~~~~~~~~~~i~~~~---~~~~i~~~~lDLssl~SV~~fa~~ 107 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGA--HVVLACRNEERGEEAKEQIQKGK---ANQKIRVIQLDLSSLKSVRKFAEE 107 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEECCCCCHHHHHHHHHH
Confidence 34566777899 8899999999999995 89999999998888888888621 112221 1112
Q ss_pred c-cccCCCcEEEEecccccCCCcchHh----hHhhhH----HHHHHHHHHHhccCCCcEEEEEe
Q psy12825 240 I-AMSEGSRIVIITAGVRSLVGETRLQ----LVDRNV----KIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 240 ~-eal~dADiVIitag~~~k~G~~r~d----ll~~N~----~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ +....-|+.|..||+...+.....| .+..|- -+...+...++..+| +-||++|
T Consensus 108 ~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vs 170 (314)
T KOG1208|consen 108 FKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVS 170 (314)
T ss_pred HHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEc
Confidence 1 2466789999999976544321111 122232 244556666676666 5555554
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.4 Score=50.90 Aligned_cols=115 Identities=19% Similarity=0.373 Sum_probs=72.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCC-CeEEEEeCCh----hH---HHHHHHHHhhcCCCCCCCcEEEcCCc-cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIY-SNFCLIDSNE----DR---CKGEMLDLQHGAPFLRSPKIESGSDI-AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~-~el~L~Di~~----e~---l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~d 245 (488)
.+..||+|.|||..|.+++..|...|+. .+|+++|..- ++ +......+.+. .. ..++ +++++
T Consensus 191 ~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~------~~---~~~l~e~~~~ 261 (763)
T PRK12862 191 IEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK------TD---ARTLAEVIEG 261 (763)
T ss_pred hhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh------cc---cCCHHHHHcC
Confidence 3446999999999999999999988874 5899999621 11 22222233321 11 1355 68999
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch-hHHHHHHHhcCCCCCcEEeec
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD-VLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd-i~t~~~~k~sg~p~~rViG~g 319 (488)
+|++|=+.+ +|. +-+++.+.|. ++.+|+-.+||.- +..+-++++++ ..||++|
T Consensus 262 ~~v~iG~s~----~g~-----------~~~~~v~~M~---~~piifalsNP~~E~~p~~a~~~~~---~~i~atG 315 (763)
T PRK12862 262 ADVFLGLSA----AGV-----------LKPEMVKKMA---PRPLIFALANPTPEILPEEARAVRP---DAIIATG 315 (763)
T ss_pred CCEEEEcCC----CCC-----------CCHHHHHHhc---cCCEEEeCCCCcccCCHHHHHHhcC---CEEEEEC
Confidence 998876542 222 1133444443 6888888899974 45566666642 1456554
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=3.9 Score=45.77 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc--------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-------- 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.... ....+ ...| .+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dv~~~~~~~~~~~~ 441 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG---GTAHA-YTCDLTDSAAVDHTVKD 441 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEE-EEecCCCHHHHHHHHHH
Confidence 344678999998 9999999999999886 89999999887776666664321 11111 1122 21
Q ss_pred ---ccCCCcEEEEecccc
Q psy12825 242 ---MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ---al~dADiVIitag~~ 256 (488)
.+...|++|.++|..
T Consensus 442 ~~~~~g~id~li~~Ag~~ 459 (657)
T PRK07201 442 ILAEHGHVDYLVNNAGRS 459 (657)
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 123689999999864
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.3 Score=45.15 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCceEEEEecccchH-HHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEE
Q psy12825 175 SPDQKITVVGAGQVGM-ACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~-~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiV 249 (488)
++++||+|||+|.++. ..+..+...+- ..-+.++|+++++++..+.++.- . ...+|+++ ++ +.|+|
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~------~---~~~~~~~~ll~~~~iD~V 71 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGI------A---KAYTDLEELLADPDIDAV 71 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCC------C---cccCCHHHHhcCCCCCEE
Confidence 4678999999985553 35555655443 35688999999988766555431 1 33457743 44 47999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
+|+.
T Consensus 72 ~Iat 75 (342)
T COG0673 72 YIAT 75 (342)
T ss_pred EEcC
Confidence 9985
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.80 E-value=1.2 Score=46.68 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---CCCCCcEEEc--CCc----ccc
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---FLRSPKIESG--SDI----AMS 243 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---~~~~~~v~~t--td~----eal 243 (488)
..++++|.|+|+ |.+|++++..|+.+|. +|+++..+.+.++.. .++..... ......+... +|. +.+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i 126 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAF 126 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence 456789999998 9999999999999987 787766655444322 22211000 0001111111 232 357
Q ss_pred CCCcEEEEecccccCCCc--chHhhHhhhHHHHHHHHHHHhcc
Q psy12825 244 EGSRIVIITAGVRSLVGE--TRLQLVDRNVKIFKDLIPKIAKG 284 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~--~r~dll~~N~~ii~ei~~~I~~~ 284 (488)
+++|.||-+++.....+. ....+...|+.-...+.+.+.+.
T Consensus 127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 889999977654322221 11234455777777777776654
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.23 Score=51.27 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=71.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHH-HH-HHHHhhcCCCCCCCcEEEcCC----c-cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCK-GE-MLDLQHGAPFLRSPKIESGSD----I-AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~-g~-~~dL~~~~~~~~~~~v~~ttd----~-eal~dADiV 249 (488)
...|-|||||-.|+-.|+.++..|+ .|.||...+.+.. ++ ...+..... .+.-+-...++ + ++++-.+-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv--~V~L~EMRp~k~TpaH~td~fAELVC-SNSlr~~~~~navGlLk~EMR~lgSl 79 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGV--PVILYEMRPVKGTPAHKTDNFAELVC-SNSLRSDALTNAVGLLKAEMRLLGSL 79 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCC--cEEEEEcccccCCCcccccchhhhee-ccccccchhhhhhHHHHHHHHHhhhH
Confidence 4579999999999999999999998 7999987654321 11 001111100 00000000011 1 334444444
Q ss_pred EEe-cccccCC-C----cchHhhHh------hhHHHHHHHHHHHhccCCCcEEEEEeCCc--hhHHHHHHHhcC
Q psy12825 250 IIT-AGVRSLV-G----ETRLQLVD------RNVKIFKDLIPKIAKGSPDCILLIISNPV--DVLTYISWKLSG 309 (488)
Q Consensus 250 Iit-ag~~~k~-G----~~r~dll~------~N~~ii~ei~~~I~~~~p~a~vIv~TNPv--di~t~~~~k~sg 309 (488)
|+. +...+-| | .+|..+-. +|-+.+.-+-+.+...-|++++|++|-|. +-+++-+++.+|
T Consensus 80 ii~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~dg~~vIATGPLTs~~La~~i~~ltG 153 (439)
T COG1206 80 IIEAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPPDGITVIATGPLTSDALAEKIKELTG 153 (439)
T ss_pred HhhhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccCCCCCcEEEecCCCCCHHHHHHHHHhhC
Confidence 443 3333322 2 24544322 22222222334555666799999999995 577887877776
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.5 Score=46.73 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=45.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~dADiVIitag 254 (488)
...+|.|||.|.+|.++|..|...|. +|..+|.+++.+.. ...+.+. ...+.+. .+++|+||.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~--~V~g~D~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV--YVIGVDKSLEALQS-CPYIHER----------YLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC--EEEEEeCCccccch-hHHHhhh----------hcCCcHHHhcCCCEEEECCC
Confidence 44689999999999999888888886 79999987654331 0001110 0112222 478999999977
Q ss_pred cc
Q psy12825 255 VR 256 (488)
Q Consensus 255 ~~ 256 (488)
.+
T Consensus 69 i~ 70 (418)
T PRK00683 69 IK 70 (418)
T ss_pred CC
Confidence 65
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.36 Score=49.94 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=30.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
+||+|||||..|.+.|..|...|+ +++++|.+++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~--~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGH--EVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCc
Confidence 589999999999999999999987 8999997653
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=2.8 Score=43.66 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=27.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
+||+|.|+|.+|..+...|...++..+|.++-+|
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvain 35 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAIN 35 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEec
Confidence 6899999999999988888876554678888554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.53 E-value=4.7 Score=41.34 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=60.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIi 251 (488)
.+.+|+-||+|..+.+....++.....+.++-+|++++..+.....+..........++.. .|. ..+.+-|+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~-~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT-ADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE-CchhhcccccCCcCEEEE
Confidence 7789999999997765333333333445899999999877754444422121222233332 232 24678999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
.+-.. ++ .+-..++.+.+.+. .|++++++-+
T Consensus 202 ~ALi~----~d--------k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AALVG----MD--------KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ecccc----cc--------cccHHHHHHHHHHhcCCCcEEEEec
Confidence 85211 11 01234455555554 6788665555
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.8 Score=42.74 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=41.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c--CCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S--EGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l--~dADiVIita 253 (488)
.||+|||+|.+|...+..+.......=..++|++++... . ...... .... ..++++. + .+.|+|+++.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~-l--a~A~~~----Gi~~-~~~~~e~ll~~~dIDaV~iaT 72 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDG-L--ARAREL----GVKT-SAEGVDGLLANPDIDIVFDAT 72 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHH-H--HHHHHC----CCCE-EECCHHHHhcCCCCCEEEECC
Confidence 689999999999987777765433333557888876532 1 111111 1112 2345543 2 4789999985
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=5.2 Score=39.58 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
++.+++.|+|| |.+|..++..|+..|. +|++++++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~ 41 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAE 41 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccc
Confidence 34568999998 9999999999998886 8999998654
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=2.8 Score=40.64 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR 214 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~ 214 (488)
++.+++.|+|+ |.+|..++..|+..+. +|+++|.+.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~ 42 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh
Confidence 34678999998 9999999999999887 89999997653
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=3.6 Score=40.05 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++++.+++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~ 41 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGA--NLILLDISPE 41 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHH
Confidence 45578999998 9999999999999886 7999999764
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=89.30 E-value=2.9 Score=41.73 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=62.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----cc--CCCcE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MS--EGSRI 248 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al--~dADi 248 (488)
||.|+|| |.+|..++..|+..+. +|+++|............+.+. . ..... ..| .+ .+ .+.|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~D~~~~~~~~~~~~~~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---T-RVTFV-EGDLRDRELLDRLFEEHKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---c-ceEEE-ECCCCCHHHHHHHHHhCCCcE
Confidence 6899998 9999999999998886 7888875322111111111110 0 11111 122 21 23 36899
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..... .....+.+..|+.....+.+.+.+..... +++++
T Consensus 74 vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~s 120 (328)
T TIGR01179 74 VIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK-FIFSS 120 (328)
T ss_pred EEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE-EEEec
Confidence 99998754321 11233456678887777887777665433 34433
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=7.3 Score=41.80 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=75.4
Q ss_pred CCceEEEEecccchHHHHH-HHHHc--CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cc---cC-
Q psy12825 176 PDQKITVVGAGQVGMACTY-SILTQ--GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AM---SE- 244 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~-~La~~--~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----ea---l~- 244 (488)
++.+|+++|-+.+|-+... .|+.. .-...+.++|.|..+.. ....+...... ....+....+. ++ ++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria-AvEQLk~yae~-lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKT-IGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHhhh-cCCcEEecCCHHHHHHHHHHHHh
Confidence 3568999999777877433 33321 11237889999887643 34444432211 11223222232 12 23
Q ss_pred --CCcEEEEe-cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC--chhHHHHHHHhcCCCCCcEEeec
Q psy12825 245 --GSRIVIIT-AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP--VDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 245 --dADiVIit-ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP--vdi~t~~~~k~sg~p~~rViG~g 319 (488)
+.|+||+- +|.. .++...+.++.+.++...|+.++++++-. .+-+..++..+..++...+| +
T Consensus 318 ~~~~DvVLIDTaGRs-----------~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI-~- 384 (436)
T PRK11889 318 EARVDYILIDTAGKN-----------YRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV-F- 384 (436)
T ss_pred ccCCCEEEEeCcccc-----------CcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEE-E-
Confidence 57999984 4321 14456677787778777888766665421 12344566666666667776 4
Q ss_pred CChHH
Q psy12825 320 TNLDS 324 (488)
Q Consensus 320 t~lds 324 (488)
|-+|.
T Consensus 385 TKLDE 389 (436)
T PRK11889 385 TKFDE 389 (436)
T ss_pred EcccC
Confidence 56665
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=6.1 Score=39.10 Aligned_cols=75 Identities=13% Similarity=0.184 Sum_probs=47.5
Q ss_pred CCCceEEEEecc---cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------
Q psy12825 175 SPDQKITVVGAG---QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----------- 240 (488)
Q Consensus 175 ~~~~KIaIIGAG---~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----------- 240 (488)
++.+.+.|+||+ .+|..++..|+..|. .|++.|.+. +++....++.... . ... ....|.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~-~~~~~~~~~~~~~--~-~~~-~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND-KLKGRVEEFAAQL--G-SDI-VLPCDVAEDASIDAMFA 76 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch-hHHHHHHHHHhcc--C-Cce-EeecCCCCHHHHHHHHH
Confidence 345678899985 699999999999886 789998873 3443444554321 1 111 111221
Q ss_pred ---cccCCCcEEEEecccc
Q psy12825 241 ---AMSEGSRIVIITAGVR 256 (488)
Q Consensus 241 ---eal~dADiVIitag~~ 256 (488)
+.+...|++|..+|..
T Consensus 77 ~~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred HHHhhcCCCCEEEECCccC
Confidence 1234579999999864
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=89.27 E-value=5.3 Score=42.22 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=58.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---C-CCCCCcEEE-cCCc----ccc-
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---P-FLRSPKIES-GSDI----AMS- 243 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~-~~~~~~v~~-ttd~----eal- 243 (488)
..++.+|.|||+|. |.. +..++...-..+|.++|+|++.++. +....... . .....++.. ..|- ...
T Consensus 148 h~~PkrVLIIGgGd-G~t-lrelLk~~~v~~It~VEIDpeVIel-Ar~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 148 VIDPKRVLILGGGD-GLA-LREVLKYETVLHVDLVDLDGSMINM-ARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCCCEEEEECCCH-HHH-HHHHHhcCCCCeEEEEeCCHHHHHH-HHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 44567999999885 553 3444444445689999999987764 33221110 0 012334433 2342 122
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc-cCCCcEEEEEeC
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCILLIISN 295 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~~p~a~vIv~TN 295 (488)
..-|+||+-...|..+.. ..+ .. .++.+.+.+ ..|++++++-++
T Consensus 225 ~~YDVIIvDl~DP~~~~~--~~L--yT----~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 225 SLYDVIIIDFPDPATELL--STL--YT----SELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCccEEEEcCCCccccch--hhh--hH----HHHHHHHHHhcCCCcEEEEecC
Confidence 246998887432211111 111 11 444455444 378997665554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 488 | ||||
| 1i0z_A | 333 | Human Heart L-Lactate Dehydrogenase H Chain, Ternar | 1e-115 | ||
| 1t2f_A | 333 | Human B Lactate Dehydrogenase Complexed With Nad+ A | 1e-114 | ||
| 5ldh_A | 334 | Structure Of The Active Ternary Complex Of Pig Hear | 1e-113 | ||
| 4aj1_A | 331 | Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be | 1e-113 | ||
| 4aj4_A | 332 | Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be | 1e-113 | ||
| 9ldt_A | 332 | Design And Synthesis Of New Enzymes Based On The La | 1e-112 | ||
| 1i10_A | 331 | Human Muscle L-Lactate Dehydrogenase M Chain, Terna | 1e-111 | ||
| 4ajp_A | 337 | Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl- | 1e-111 | ||
| 3h3f_A | 331 | Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi | 1e-110 | ||
| 2ldx_A | 331 | Characterization Of The Antigenic Sites On The Refi | 1e-105 | ||
| 6ldh_A | 330 | Refined Crystal Structure Of Dogfish M4 Apo-Lactate | 1e-104 | ||
| 1ldm_A | 329 | Refined Crystal Structure Of Dogfish M4 Apo-Lactate | 1e-104 | ||
| 1v6a_A | 332 | Crystal Structure Of L-Lactate Dehydrogenase From C | 1e-101 | ||
| 2v65_A | 331 | Apo Ldh From The Psychrophile C. Gunnari Length = 3 | 1e-100 | ||
| 3ldh_A | 330 | A Comparison Of The Structures Of Apo Dogfish M4 La | 8e-76 | ||
| 3vku_A | 326 | Penta Mutant Of Lactobacillus Casei Lactate Dehydro | 8e-66 | ||
| 2zqy_A | 326 | T-State Structure Of Allosteric L-Lactate Dehydroge | 2e-65 | ||
| 1llc_A | 325 | Structure Determination Of The Allosteric L-Lactate | 3e-65 | ||
| 3pqd_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 2e-64 | ||
| 3pqe_A | 326 | Crystal Structure Of L-Lactate Dehydrogenase From B | 5e-63 | ||
| 1lld_A | 319 | Molecular Basis Of Allosteric Activation Of Bacteri | 6e-62 | ||
| 4a73_A | 310 | Single Point Mutant Of Thermus Thermophilus Lactate | 2e-61 | ||
| 1ldn_A | 316 | Structure Of A Ternary Complex Of An Allosteric Lac | 2e-61 | ||
| 1ldb_A | 317 | Structure Determination And Refinement Of Bacillus | 2e-61 | ||
| 2v6m_A | 310 | Crystal Structure Of Lactate Dehydrogenase From The | 3e-61 | ||
| 1y6j_A | 318 | L-Lactate Dehydrogenase From Clostridium Thermocell | 9e-60 | ||
| 2xxb_A | 310 | Penta-Mutant Of Thermus Thermophilus Lactate Dehydr | 9e-60 | ||
| 3h3j_A | 317 | Crystal Structure Of Lactate Dehydrogenase Mutant ( | 4e-59 | ||
| 1ez4_A | 318 | Crystal Structure Of Non-Allosteric L-Lactate Dehyd | 3e-58 | ||
| 3d0o_A | 317 | Crystal Structure Of Lactate Dehydrogenase From Sta | 3e-58 | ||
| 1a5z_A | 319 | Lactate Dehydrogenase From Thermotoga Maritima (tml | 5e-58 | ||
| 2e37_A | 310 | Structure Of Tt0471 Protein From Thermus Thermophil | 3e-57 | ||
| 2i6t_A | 303 | Orthorhombic Structure Of The Ldh Domain Of Human U | 2e-53 | ||
| 2v6b_A | 304 | Crystal Structure Of Lactate Dehydrogenase From Dei | 1e-46 | ||
| 2d4a_A | 308 | Structure Of The Malate Dehydrogenase From Aeropyru | 1e-41 | ||
| 2x0i_A | 294 | 2.9 A Resolution Structure Of Malate Dehydrogenase | 6e-41 | ||
| 3tl2_A | 315 | Crystal Structure Of Bacillus Anthracis Str. Ames M | 4e-40 | ||
| 1gv1_A | 310 | Structural Basis For Thermophilic Protein Stability | 3e-39 | ||
| 1guz_A | 310 | Structural Basis For Thermophilic Protein Stability | 4e-39 | ||
| 1gv0_A | 310 | Structural Basis For Thermophilic Protein Stability | 8e-38 | ||
| 3nep_X | 314 | 1.55a Resolution Structure Of Malate Dehydrogenase | 4e-35 | ||
| 2hlp_A | 303 | Crystal Structure Of The E267r Mutant Of A Halophil | 2e-34 | ||
| 1o6z_A | 303 | 1.95 A Resolution Structure Of (r207s,r292s) Mutant | 2e-34 | ||
| 2x0r_A | 304 | R207s,R292s Mutant Of Malate Dehydrogenase From The | 2e-34 | ||
| 1hlp_A | 303 | Structural Features Stabilizing Halophilic Malate D | 2e-34 | ||
| 2j5k_A | 304 | 2.0 A Resolution Structure Of The Wild Type Malate | 2e-34 | ||
| 3gvh_A | 324 | Crystal Structure Of LactateMALATE DEHYDROGENASE FR | 4e-33 | ||
| 1hyg_A | 313 | Crystal Structure Of Mj0490 Gene Product, The Famil | 5e-32 | ||
| 1cet_A | 316 | Chloroquine Binds In The Cofactor Binding Site Of P | 8e-32 | ||
| 2hjr_A | 328 | Crystal Structure Of Cryptosporidium Parvum Malate | 2e-31 | ||
| 1ceq_A | 316 | Chloroquine Binds In The Cofactor Binding Site Of P | 7e-31 | ||
| 1hyh_A | 309 | Crystal Structure Of L-2-hydroxyisocaproate Dehydro | 1e-30 | ||
| 1t24_A | 322 | Plasmodium Falciparum Lactate Dehydrogenase Complex | 1e-30 | ||
| 1xiv_A | 323 | Plasmodium Falciparum Lactate Dehydrogenase Complex | 2e-30 | ||
| 1u4o_A | 321 | Plasmodium Falciparum Lactate Dehydrogenase Complex | 2e-30 | ||
| 1oc4_A | 322 | Lactate Dehydrogenase From Plasmodium Berghei Lengt | 4e-30 | ||
| 1t2e_A | 322 | Plasmodium Falciparum Lactate Dehydrogenase S245a, | 6e-30 | ||
| 1sov_A | 328 | Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap | 6e-30 | ||
| 3czm_A | 326 | T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex | 7e-30 | ||
| 2a92_A | 321 | Crystal Structure Of Lactate Dehydrogenase From Pla | 2e-29 | ||
| 3p7m_A | 321 | Structure Of Putative Lactate Dehydrogenase From Fr | 2e-29 | ||
| 1guy_A | 309 | Structural Basis For Thermophilic Protein Stability | 6e-29 | ||
| 2fm3_A | 321 | Crystal Structure Of The Lactate Dehydrogenase From | 1e-28 | ||
| 1ur5_A | 309 | Stabilization Of A Tetrameric Malate Dehydrogenase | 1e-28 | ||
| 2ewd_A | 317 | Crystal Structure Of The Lactate Dehydrogenase From | 1e-28 | ||
| 1uxh_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-28 | ||
| 1uxi_A | 309 | Large Improvement In The Thermal Stability Of A Tet | 2e-28 | ||
| 1pze_A | 331 | T.gondii Ldh1 Apo Form Length = 331 | 2e-24 | ||
| 1pzg_A | 331 | T.Gondii Ldh1 Complexed With Apad And Sulfate At 1. | 2e-24 | ||
| 3om9_A | 329 | T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex | 6e-24 | ||
| 1emd_A | 312 | Crystal Structure Of A Ternary Complex Of Escherich | 2e-13 | ||
| 2pwz_A | 312 | Crystal Structure Of The Apo Form Of E.Coli Malate | 2e-12 | ||
| 1ib6_A | 312 | Crystal Structure Of R153c E. Coli Malate Dehydroge | 2e-11 | ||
| 4e0b_A | 313 | 2.17 Angstrom Resolution Crystal Structure Of Malat | 6e-09 | ||
| 1mld_A | 314 | Refined Structure Of Mitochondrial Malate Dehydroge | 8e-09 | ||
| 2dfd_A | 342 | Crystal Structure Of Human Malate Dehydrogenase Typ | 1e-08 | ||
| 1sev_A | 362 | Mature And Translocatable Forms Of Glyoxysomal Mala | 5e-08 | ||
| 1smk_A | 326 | Mature And Translocatable Forms Of Glyoxysomal Mala | 9e-08 | ||
| 4h7p_A | 345 | Crystal Structure Of A Putative Cytosolic Malate De | 1e-05 | ||
| 1civ_A | 385 | Chloroplast Nadp-Dependent Malate Dehydrogenase Fro | 1e-04 |
| >pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333 | Back alignment and structure |
|
| >pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333 | Back alignment and structure |
|
| >pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334 | Back alignment and structure |
|
| >pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331 | Back alignment and structure |
|
| >pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332 | Back alignment and structure |
|
| >pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332 | Back alignment and structure |
|
| >pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331 | Back alignment and structure |
|
| >pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337 | Back alignment and structure |
|
| >pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331 | Back alignment and structure |
|
| >pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331 | Back alignment and structure |
|
| >pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330 | Back alignment and structure |
|
| >pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329 | Back alignment and structure |
|
| >pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332 | Back alignment and structure |
|
| >pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331 | Back alignment and structure |
|
| >pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate Dehydrogenase And Its Ternary Complexes Length = 330 | Back alignment and structure |
|
| >pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 | Back alignment and structure |
|
| >pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326 | Back alignment and structure |
|
| >pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325 | Back alignment and structure |
|
| >pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326 | Back alignment and structure |
|
| >pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326 | Back alignment and structure |
|
| >pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319 | Back alignment and structure |
|
| >pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310 | Back alignment and structure |
|
| >pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316 | Back alignment and structure |
|
| >pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317 | Back alignment and structure |
|
| >pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310 | Back alignment and structure |
|
| >pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 | Back alignment and structure |
|
| >pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310 | Back alignment and structure |
|
| >pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317 | Back alignment and structure |
|
| >pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318 | Back alignment and structure |
|
| >pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317 | Back alignment and structure |
|
| >pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319 | Back alignment and structure |
|
| >pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310 | Back alignment and structure |
|
| >pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human Ubiquitin- Conjugating Enzyme E2-Like Isoform A Length = 303 | Back alignment and structure |
|
| >pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304 | Back alignment and structure |
|
| >pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308 | Back alignment and structure |
|
| >pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294 | Back alignment and structure |
|
| >pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315 | Back alignment and structure |
|
| >pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 | Back alignment and structure |
|
| >pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 | Back alignment and structure |
|
| >pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303 | Back alignment and structure |
|
| >pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303 | Back alignment and structure |
|
| >pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304 | Back alignment and structure |
|
| >pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303 | Back alignment and structure |
|
| >pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304 | Back alignment and structure |
|
| >pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 | Back alignment and structure |
|
| >pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 | Back alignment and structure |
|
| >pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316 | Back alignment and structure |
|
| >pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 | Back alignment and structure |
|
| >pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316 | Back alignment and structure |
|
| >pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase From Lactobacillus Confusus At 2.2 Angstroms Resolution-an Example Of Strong Asymmetry Between Subunits Length = 309 | Back alignment and structure |
|
| >pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322 | Back alignment and structure |
|
| >pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323 | Back alignment and structure |
|
| >pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321 | Back alignment and structure |
|
| >pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322 | Back alignment and structure |
|
| >pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322 | Back alignment and structure |
|
| >pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328 | Back alignment and structure |
|
| >pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326 | Back alignment and structure |
|
| >pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321 | Back alignment and structure |
|
| >pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 | Back alignment and structure |
|
| >pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 | Back alignment and structure |
|
| >pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321 | Back alignment and structure |
|
| >pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 | Back alignment and structure |
|
| >pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317 | Back alignment and structure |
|
| >pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 | Back alignment and structure |
|
| >pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331 | Back alignment and structure |
|
| >pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331 | Back alignment and structure |
|
| >pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329 | Back alignment and structure |
|
| >pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312 | Back alignment and structure |
|
| >pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312 | Back alignment and structure |
|
| >pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312 | Back alignment and structure |
|
| >pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 | Back alignment and structure |
|
| >pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314 | Back alignment and structure |
|
| >pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342 | Back alignment and structure |
|
| >pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362 | Back alignment and structure |
|
| >pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326 | Back alignment and structure |
|
| >pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 | Back alignment and structure |
|
| >pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 488 | |||
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 1e-169 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 1e-160 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 1e-158 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 1e-158 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 1e-157 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 1e-156 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 1e-155 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 1e-155 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 1e-153 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 1e-152 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 1e-149 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 1e-149 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 1e-142 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 1e-141 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 1e-139 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 1e-137 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 1e-127 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 1e-122 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 1e-117 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 1e-115 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 1e-115 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 1e-114 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 1e-114 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 1e-114 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 1e-113 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 1e-112 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 1e-111 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 1e-110 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 2e-65 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 7e-47 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 3e-46 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 6e-46 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 3e-41 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 2e-40 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 1e-39 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 2e-39 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-16 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 2e-07 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 2e-07 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 7e-07 | |
| 1vjt_A | 483 | Alpha-glucosidase; TM0752, structural genomics, JC | 3e-05 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 7e-05 |
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 | Back alignment and structure |
|---|
Score = 480 bits (1237), Expect = e-169
Identities = 185/328 (56%), Positives = 248/328 (75%)
Query: 160 STVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEM 219
+ D+L+ + + P KITVVG G VGMAC SIL + + L+D ED+ KGEM
Sbjct: 2 ALKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEM 61
Query: 220 LDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIP 279
+DLQHG+ FL++PKI S D +++ S++VIITAG R GE+RL LV RNV IFK +IP
Sbjct: 62 MDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIP 121
Query: 280 KIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 339
+ K SP C LLI+SNPVD+LTY++WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P
Sbjct: 122 NVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHP 181
Query: 340 ESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399
S HG+++GEHGDSSVPVWSGVNVAGV+LK LNP +GT+ D E + +H VV+SAYEVI
Sbjct: 182 LSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241
Query: 400 KLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTH 459
KLKGYTSWA+GLSVA ++ +++ N ++H +ST+I+G +GI+E+VFLS+PC++ NG++
Sbjct: 242 KLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISD 301
Query: 460 IINQNLTPDEAEKLRKSAATISQIQKGL 487
++ LTPDE +L+KSA T+ IQK L
Sbjct: 302 VVKVTLTPDEEARLKKSADTLWGIQKEL 329
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 | Back alignment and structure |
|---|
Score = 454 bits (1171), Expect = e-160
Identities = 114/313 (36%), Positives = 193/313 (61%), Gaps = 2/313 (0%)
Query: 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE 235
K+ V+GAG VG ++ +GI L D ++R + E+LD+QHG+ F + I+
Sbjct: 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID 65
Query: 236 SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
D + + +V+ITAG R G++RL+LV V I K ++P + K +P+ I ++I+N
Sbjct: 66 GSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN 125
Query: 296 PVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSV 355
PVD+ T+++ KL+G P+N++ GSGTNLDS R R L+AQ+ G++ ++VH +I GEHGDS V
Sbjct: 126 PVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEV 185
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQ-DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414
P+W + GV + + P G + D + +H +V N+AY++I KG T++A+G+S
Sbjct: 186 PLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGV 245
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
I +L++TN+I VS++++ HGI ++ +S+P ++ GV + IN ++ E L+
Sbjct: 246 DIIEAVLHDTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTINTPVSDKELAALK 304
Query: 475 KSAATISQIQKGL 487
+SA T+ +
Sbjct: 305 RSAETLKETAAQF 317
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 | Back alignment and structure |
|---|
Score = 451 bits (1162), Expect = e-158
Identities = 114/309 (36%), Positives = 178/309 (57%), Gaps = 2/309 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+ +VG+G VG A Y++ G+ L+D + + D+ H PF + +G
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG- 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
EG+R V++ AGV GETRLQL+DRN ++F ++P++ + +P+ +LL+ +NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
V+T +++ LSG P RV+GSGT LD+ RFR LLA+ L ++P+SVH +++GEHGDS V VW
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
S V GV L E G E+ R+ V +AY +I+ KG T + +G +A +
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
+L + ++ VS G+ EV LSLP ++ GV + +L+P+E LR+SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVAGV-LEVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAE 299
Query: 479 TISQIQKGL 487
+ + L
Sbjct: 300 ILKEAAFAL 308
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 450 bits (1161), Expect = e-158
Identities = 118/310 (38%), Positives = 187/310 (60%), Gaps = 2/310 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ ++GAG VG + +++ + + LID +++ GE +D+ HG PF+ + +G
Sbjct: 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 67
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D + + ++++TAG GETRL L +NV I K++ I K ++L++SNPV
Sbjct: 68 -DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV 126
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D++TY+ K SG P +VIGSGT LDS+RFR LL++KLG+ ++VHG+IIGEHGDS +P+
Sbjct: 127 DIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPL 186
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS ++AG + E E+ ++ DV + +IK KG T + + +S+ +I
Sbjct: 187 WSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIV 246
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
TLL N N I V T+I G +GI E+V +SLP ++ GV ++ NLTP+E E LR SA
Sbjct: 247 ETLLKNQNTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSA 305
Query: 478 ATISQIQKGL 487
+ ++ +
Sbjct: 306 EQVKKVLNEV 315
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 | Back alignment and structure |
|---|
Score = 448 bits (1154), Expect = e-157
Identities = 110/308 (35%), Positives = 180/308 (58%), Gaps = 2/308 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
++ V+GAG VG + ++++ QGI LID+NE + G+ +D HG F P
Sbjct: 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D + +V+I AG GETRL LVD+N+ IF+ ++ + + L+ +NPV
Sbjct: 67 GDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV 126
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WK SG P RVIGSGT LD+ RFR LL + ++P++VH +IIGEHGD+ +PV
Sbjct: 127 DILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPV 186
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS + + +++L + G E ++ R+ +V ++AY++I+ KG T + + + +A ++
Sbjct: 187 WSQAYIGVMPIRKLVESKGEEAQ-KDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVT 245
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+L+N N I VS + G +G +V++ +P V+ NG+ +I L DE + SA
Sbjct: 246 RAILHNENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSA 304
Query: 478 ATISQIQK 485
AT+ +
Sbjct: 305 ATLKSVLA 312
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 | Back alignment and structure |
|---|
Score = 445 bits (1148), Expect = e-156
Identities = 122/308 (39%), Positives = 183/308 (59%), Gaps = 2/308 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ ++GAG VG + ++++ QGI +ID N+++ G+++DL HG F P S
Sbjct: 6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + IV I AG GETRL+LV++N+KIFK ++ ++ D I L+ +NPV
Sbjct: 66 GTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPV 125
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WK SG PK RVIGSGT LDS RFR +L++ G +P++V IIGEHGD+ +PV
Sbjct: 126 DILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPV 185
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS NV GV + EL E ++ DV N+AY +I+ KG T + + +S+A I+
Sbjct: 186 WSHANVGGVPVSELVEK-NDAYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARIT 244
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+L+N N I VST + G +G ++V++ +P V+ G+ I NL E E+ SA
Sbjct: 245 KAILHNENSILTVSTYLDGQYGA-DDVYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSA 303
Query: 478 ATISQIQK 485
+ I K
Sbjct: 304 GVLKNILK 311
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 | Back alignment and structure |
|---|
Score = 443 bits (1143), Expect = e-155
Identities = 107/310 (34%), Positives = 178/310 (57%), Gaps = 3/310 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ ++G G VG + +S++ Q I +ID + ++ +G+++DL+H P+ +
Sbjct: 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + + +V+I AG GETRL LV +N+KIFK ++ ++ D I L+ +NPV
Sbjct: 67 GEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPV 126
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+L Y +WK SG PK RVIGSGT LDS RFR+LL++ ++P SV IIGEHGD+ +PV
Sbjct: 127 DILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPV 186
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS N+AG LK L + ++ ++AY++I+ KG T + + + +A I+
Sbjct: 187 WSHANIAGQPLKTLLEQ--RPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLARIT 244
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+ N + + VS L++G + E+V++ +P V+ NG+ +++ L +E K SA
Sbjct: 245 EAIFRNEDAVLTVSALLEGEYEE-EDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSA 303
Query: 478 ATISQIQKGL 487
T+ I
Sbjct: 304 KTLKDIMAEA 313
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 | Back alignment and structure |
|---|
Score = 441 bits (1138), Expect = e-155
Identities = 119/309 (38%), Positives = 188/309 (60%), Gaps = 3/309 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
KI +VG G+VG + +++L +G LID ++ R +G+ LDL HG PF R I +G
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG- 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
D A +GS +VI+ AGV GETRLQL+ RN ++ K++ ++K +PD I+++++NPVD
Sbjct: 61 DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
VLTY K SG +V GSGT LD+ R R L+AQ G SP SVH ++IGEHGDS VPVW
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
SG + G+ L+ + + + D++ +AYE+I+ KG T +A+ L+VA I
Sbjct: 181 SGAMIGGIPLQNMCQ-VCQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
++ + ++ +S ++ + G+ +++ +S+P + +GV I+ NL +E E RKSA+
Sbjct: 240 SIFFDEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILELNLNEEELEAFRKSAS 298
Query: 479 TISQIQKGL 487
+ +
Sbjct: 299 ILKNAINEI 307
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 | Back alignment and structure |
|---|
Score = 437 bits (1127), Expect = e-153
Identities = 121/308 (39%), Positives = 194/308 (62%), Gaps = 3/308 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
QK+ +VG G VG + Y+++ QGI ++D +D+ KG+ +DL + PF KI S
Sbjct: 10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 69
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + ++ + +V+ITAG GETRL LV++N+KI K ++ I + I L+ +NPV
Sbjct: 70 -EYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV 128
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WKLSGFPKNRV+GSGT+LD+ RFR +A+ + + SVH +I+GEHGD+ PV
Sbjct: 129 DILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPV 188
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WS N+ GVT+ E E + V++ DV ++AYE+IKLKG T + + ++A IS
Sbjct: 189 WSHANIGGVTIAEWVKA-HPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARIS 247
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+LN+ N + +S + G +G+ ++++ P V+ NG+ +I+ LT E E ++KSA
Sbjct: 248 KAILNDENAVLPLSVYMDGQYGL-NDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSA 306
Query: 478 ATISQIQK 485
+ + ++
Sbjct: 307 SQLKKVLT 314
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 | Back alignment and structure |
|---|
Score = 435 bits (1122), Expect = e-152
Identities = 110/308 (35%), Positives = 179/308 (58%), Gaps = 4/308 (1%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
QK+ +VG G VG + +++ QGI F ++D +DR KG+ LDL+ F KI SG
Sbjct: 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + + + +V+ITAG GE+RL LV++N+ I ++ + D I L+ +NPV
Sbjct: 66 -EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D+LTY +WK SGFPK RVIGSGT+LDS R RV L ++ + P SV +I+GEHGDS
Sbjct: 125 DILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAA 184
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
+S + ++++ G ++ +L V N AY++I LKG T + +G ++ IS
Sbjct: 185 YSTATIGTRPVRDVAKEQGVSD--DDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRIS 242
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+L + N + V + G +G+ ++++ P ++ G+ II L+ DE +K++ SA
Sbjct: 243 KAILRDENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSA 301
Query: 478 ATISQIQK 485
AT+ ++
Sbjct: 302 ATLKKVLN 309
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 | Back alignment and structure |
|---|
Score = 428 bits (1102), Expect = e-149
Identities = 108/309 (34%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+ VVG G VG ++++ +G S L+D +EDR + E D+ H AP ++ G
Sbjct: 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG- 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
+ +++VI+TAG GE+RL L+++N IF++L+P+I + +PD +LL+ SNPVD
Sbjct: 61 GHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
+LT ++ +L+ P VIGSGT LDS RFR L+AQ G+ HG+++GEHGDS V W
Sbjct: 121 LLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAW 178
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH 418
S VAG+ + + + + ++ N+A +I+ K T + +G ++A I+
Sbjct: 179 SSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITE 238
Query: 419 TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478
+L + + VS +G V LSLP V+ GV ++ LT DE +KL +SA
Sbjct: 239 AVLRDRRAVLTVSAPT-PEYG----VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAG 293
Query: 479 TISQIQKGL 487
+ ++ L
Sbjct: 294 VLRGFKQQL 302
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 | Back alignment and structure |
|---|
Score = 426 bits (1099), Expect = e-149
Identities = 86/315 (27%), Positives = 149/315 (47%), Gaps = 14/315 (4%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
+KI ++G G VG A + ++ QG+ ++ ID+NE + K + +D Q L +
Sbjct: 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
Query: 238 SDIAMSEGSRIVIITAGVRSLV----GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII 293
+D A + +VI T G L R + + + + + + +L++I
Sbjct: 62 NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121
Query: 294 SNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDS 353
SNPVDV+T + ++GFP ++VIG+GT LD+ R + + + L P SV G+ +GEHG+S
Sbjct: 122 SNPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNS 181
Query: 354 SVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413
WS V V G + L + + + + + V+ KGYTS+ + S
Sbjct: 182 QFVAWSTVRVMGQPIVTL-----ADAGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSA 236
Query: 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKL 473
I+ ++ + + VS ++LS P ++ +GV +LT DE EKL
Sbjct: 237 IRIAKAVMADAHAELVVSNRRDDM-----GMYLSYPAIIGRDGVLAETTLDLTTDEQEKL 291
Query: 474 RKSAATISQIQKGLL 488
+S I Q ++
Sbjct: 292 LQSRDYIQQRFDEIV 306
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 | Back alignment and structure |
|---|
Score = 410 bits (1056), Expect = e-142
Identities = 155/348 (44%), Positives = 212/348 (60%), Gaps = 42/348 (12%)
Query: 160 STVDRLLSQVAPSIESPDQ-KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE 218
+ D+L+ +A S E KITVVG VGMA S+L + + L+D ED+ KGE
Sbjct: 3 ALKDKLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGE 62
Query: 219 MLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLI 278
M+DL+HG+ FL + KI SG D ++S GS++V+ITAG R GE+RL LV RNV IFK +I
Sbjct: 63 MMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFII 122
Query: 279 PKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 338
P I K SPDC+ + WKLSG P +R+IGSG NLDS RFR L+ ++LG+
Sbjct: 123 PNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182
Query: 339 PESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398
V G++IG+HGDS VWSG+ A + H DVV+SAYEV
Sbjct: 183 SCLVIGWVIGQHGDSVPSVWSGMWDAKL---------------------HKDVVDSAYEV 221
Query: 399 IKLKGYTSWALGL-----------------SVASISHTLLNNTNKIHAVSTLIQGHHGIE 441
IKLKGYTSWA+GL SVA ++ T++ + ++H VST+++ +GI+
Sbjct: 222 IKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIK 281
Query: 442 EEVFLSLPCVMADNGVTH--IINQNLTPDEAEKLRKSAATISQIQKGL 487
+ VFLSLPCV+ +NG++H I+ L PDE ++L+KSA T+ IQK L
Sbjct: 282 DNVFLSLPCVL-NNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL 328
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 | Back alignment and structure |
|---|
Score = 405 bits (1044), Expect = e-141
Identities = 96/312 (30%), Positives = 156/312 (50%), Gaps = 14/312 (4%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLID--SNEDRCKGEMLDLQHGAPFLRSPKIE 235
K++VVGA G VG A Y+I + I +D ED G+ D HG + + ++
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR 61
Query: 236 SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
G + GS +V+ITAG+ G+TR+ L N I +D+ + + + D I L SN
Sbjct: 62 QG-GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120
Query: 296 PVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSV 355
PVD+L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ V
Sbjct: 121 PVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQV 180
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415
PV+S V+V G + + +L D+ SA +VI+ KG T W VA
Sbjct: 181 PVFSKVSVDGTDPEF---------SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAH 231
Query: 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475
+ +L++T ++ S ++G G E+ +P + NGV I+ +L E + +
Sbjct: 232 MVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMAD 290
Query: 476 SAATISQIQKGL 487
+A +S +
Sbjct: 291 AAEKLSDQYDKI 302
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 | Back alignment and structure |
|---|
Score = 401 bits (1034), Expect = e-139
Identities = 113/311 (36%), Positives = 172/311 (55%), Gaps = 25/311 (8%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
KITVVG G++G+ACT +I +GI L+D +E KG +DL+ P +E
Sbjct: 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLEI----FNLPNVEIS 69
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
D++ S S++VI T ++ L +V NV +F+ L+P + S +LL+ S PV
Sbjct: 70 KDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPV 128
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
+++TY++WKLS FP NRVIG G NLDS R + ++ L ++IGE G+ V
Sbjct: 129 EIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLT 188
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
WSG + N A E++++KG SW++GLSVA +
Sbjct: 189 WSGQEEVVSH------------------TSQVQLSNRAMELLRVKGQRSWSVGLSVADMV 230
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDE-AEKLRKS 476
+++NN K+H+VS L +G++ I EVFLSLPC++ NGV+ +I L D EKL+ S
Sbjct: 231 DSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSS 290
Query: 477 AATISQIQKGL 487
A++I +Q+ L
Sbjct: 291 ASSIHSLQQQL 301
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 | Back alignment and structure |
|---|
Score = 394 bits (1016), Expect = e-137
Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 20/310 (6%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESG 237
K+ VGAG+VG ++ L L+D ED GE +DL H A + + PKI G
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D ++ +GS I+++TAG+ G TRL L +N I KD+ KI + +P+ +L+++NP+
Sbjct: 62 ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
DV+TYI WK SG P+N V G G LDS R + L + +IIGEHGDS
Sbjct: 122 DVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIGEHGDSMFVA 179
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417
S + G E + DV A EVIK KG T + +++ +
Sbjct: 180 KSLADFDGEVDWE---------------AVENDVRFVAAEVIKRKGATIFGPAVAIYRMV 224
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
++ +T +I S ++QG +GI E V + +P + NG + + L+ +E EKLR SA
Sbjct: 225 KAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSA 282
Query: 478 ATISQIQKGL 487
+ + + L
Sbjct: 283 KILRERLEEL 292
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 | Back alignment and structure |
|---|
Score = 370 bits (953), Expect = e-127
Identities = 97/312 (31%), Positives = 166/312 (53%), Gaps = 11/312 (3%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIESG 237
KITV+GAG VG + + + + L+D E +G+ LD+ P K+
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D A + S IVIITAG+ G TR L+ +N I K++ I K S + I++++SNP+
Sbjct: 62 NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
D++T+++W SG PK RVIG LD+ RFR +A +LG+S + ++ ++G HGD+ VPV
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVAS 415
VAG+ + +L P ++ L N E+++ +G +A SV
Sbjct: 182 VKYTTVAGIPISDLLPAETIDK-------LVERTRNGGAEIVEHLKQGSAFYAPASSVVE 234
Query: 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475
+ +++ + ++ + ++G +GI ++ F+ +P + NGV I NL + + L+K
Sbjct: 235 MVESIVLDRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQK 293
Query: 476 SAATISQIQKGL 487
SA + + K L
Sbjct: 294 SAKIVDENCKML 305
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 | Back alignment and structure |
|---|
Score = 357 bits (920), Expect = e-122
Identities = 87/311 (27%), Positives = 162/311 (52%), Gaps = 10/311 (3%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESG 237
K+TV+GAG VG + Q + ++D + +G+ LD++ +P ++
Sbjct: 2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D +E S + IITAG+ G +R L+ +N +I + + +GSPD +++++NP+
Sbjct: 62 NDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121
Query: 298 DVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPV 357
DV+TY++++ SGFP NRV+G LD+ RFR +A++L +S V ++G HGD+ VP+
Sbjct: 122 DVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPL 181
Query: 358 WSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW-ALGLSVASI 416
V G+ + +L D + + E++ L G ++W A G + A +
Sbjct: 182 PRYTTVGGIPVPQL-------IDDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEM 234
Query: 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476
+ +L + +I + G +G+ +++F+ +P + GV +I +L DE +L+ S
Sbjct: 235 TEAILKDNKRILPCAAYCDGEYGL-DDLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTS 293
Query: 477 AATISQIQKGL 487
A + L
Sbjct: 294 AGHVHSNLDDL 304
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 | Back alignment and structure |
|---|
Score = 345 bits (887), Expect = e-117
Identities = 99/310 (31%), Positives = 162/310 (52%), Gaps = 11/310 (3%)
Query: 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIESGS 238
IT++GAG+VGMA ++ +G + LI + +GE LDL H A L +I +
Sbjct: 2 ITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
GS IV++TAG+ G TR QL++ N DL KI + D I++I +NPVD
Sbjct: 61 SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVW 358
+TY+ +K +GFP+ RVIG LDS R ++QKLG+S +SV+ ++G HG PV
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 359 SGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW-ALGLSVASIS 417
+V GV L+ L E + ++ VN+ ++ +L+GY+S +
Sbjct: 181 RLSSVGGVPLEHL-------MSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477
+ ++ +I+ S +QG +G ++ +P V+ +G+ II LT DE K ++
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAV 292
Query: 478 ATISQIQKGL 487
+ ++ + L
Sbjct: 293 QAVKKLVETL 302
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 | Back alignment and structure |
|---|
Score = 341 bits (878), Expect = e-115
Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 7/313 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIES 236
+KI V+G+GQ+G Y + + ++ L D E +G+ LD+ H S K+
Sbjct: 5 RKIAVIGSGQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
D A GS +VIITA + + R +L+ N +I + + K P+ ++ I+NP
Sbjct: 64 TDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNP 123
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+DV+ K+SG P N+V G LDS RFR +AQ G++ V +IG HGD VP
Sbjct: 124 LDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVP 183
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
S V+V GV L Q+ + + + EV G +A +
Sbjct: 184 ATSSVSVGGVPLSSFIKQGLITQEQID--EIVCHTRIAWKEVADNLKTGTAYFAPAAAAV 241
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
++ L + + S H+G+ + +++ +P ++ NGV I+ +LTP E + L
Sbjct: 242 KMAEAYLKDKKAVVPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDILELDLTPLEQKLLG 300
Query: 475 KSAATISQIQKGL 487
+S ++ I K L
Sbjct: 301 ESINEVNTISKVL 313
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 | Back alignment and structure |
|---|
Score = 341 bits (877), Expect = e-115
Identities = 90/315 (28%), Positives = 158/315 (50%), Gaps = 12/315 (3%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE--DRCKGEMLDLQHGAPFLRSP-KI 234
K+T++GA G+VG A + + + LI ++ +G D+ RS I
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 235 ESGS--DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292
S ++ + + S +VIIT+GV G +R+ L N KI KIA+ I +
Sbjct: 62 YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 293 ISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGD 352
I+NPVDV+TY + S F +N+V G GT+LDS+RF+V +A+ G+ + V IIGEHGD
Sbjct: 121 ITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD 180
Query: 353 SSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLS 412
S VP+ S ++ G+ +++ + DV ++I+LKG + + +
Sbjct: 181 SMVPLLSATSIGGIPIQKF-----ERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAA 235
Query: 413 VASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEK 472
+ ++ ++NN ++ +S + G +V + +P + +G+ +++ L DE
Sbjct: 236 ILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIA 295
Query: 473 LRKSAATISQIQKGL 487
RKSA I + + +
Sbjct: 296 FRKSAEIIKKYCEEV 310
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-114
Identities = 78/328 (23%), Positives = 153/328 (46%), Gaps = 13/328 (3%)
Query: 169 VAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF 228
+AP++ +K+ ++G+G +G Y + + ++ L D + +G+ LDL H
Sbjct: 1 MAPALVQRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSV 59
Query: 229 LRSPKIESGS--DIAMSEGSRIVIITAGV-----RSLVGETRLQLVDRNVKIFKDLIPKI 281
+ + A G+ VI+TAG+ + +R L+ N KI +++ I
Sbjct: 60 VDTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 119
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 341
K P +++++NP+D + + + SG P N + G LDS RFR +A L +SP
Sbjct: 120 KKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRD 179
Query: 342 VHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401
V +IG HGD VP+ + V G +++ + + S E+++
Sbjct: 180 VQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLE--EIAEHTKVSGGEIVRF 237
Query: 402 --KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTH 459
+G +A S +++ + LN+ ++ S G +G+ +++F+ LP V+ G+
Sbjct: 238 LGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL-KDMFIGLPAVIGGAGIER 296
Query: 460 IINQNLTPDEAEKLRKSAATISQIQKGL 487
+I L +E ++ +KS + + K +
Sbjct: 297 VIELELNEEEKKQFQKSVDDVMALNKAV 324
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-114
Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 7/313 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
+KI+++GAGQ+G + + + + + D E +G+ LDL H + SP KI
Sbjct: 15 KKISIIGAGQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
++ + S +VIITAGV TR L+ N KI + + K P+ ++ I+NP
Sbjct: 74 ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNP 133
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D + Y + SG P N+V G LDS RFR L++ LG+ P V ++G HGD +P
Sbjct: 134 LDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIP 193
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ S V + G+ L + N + E+++L G +A S
Sbjct: 194 LTSSVTIGGILLSDFVEQGKITHSQIN--EIIKKTAFGGGEIVELLKTGSAFYAPAASAV 251
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
+++ L ++ + ST + G + + +F+ +P V+ NG+ ++ NL+ DE
Sbjct: 252 AMAQAYLKDSKSVLVCSTYLTGQYNV-NNLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFS 310
Query: 475 KSAATISQIQKGL 487
KS +I + + L
Sbjct: 311 KSVESIQNLVQDL 323
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 | Back alignment and structure |
|---|
Score = 337 bits (867), Expect = e-114
Identities = 89/313 (28%), Positives = 162/313 (51%), Gaps = 7/313 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
KI ++G+G +G + + + + L D E +G+ LD+ +P K
Sbjct: 8 NKIALIGSGMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
+D A EG+ +VI+TAGV G +R L+ N+K+ + + I K +P+ ++ I+NP
Sbjct: 67 ANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D + + K SG P ++V+G LDS RFR L+++ +S E V F++G HGDS VP
Sbjct: 127 LDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVP 186
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ VAG+ L +L T QD + ++ + E++ L G +A S
Sbjct: 187 LARYSTVAGIPLPDLVKMGWTSQDKLD--KIIQRTRDGGAEIVGLLKTGSAFYAPAASAI 244
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
++ + L + ++ V+ + G +G+ +++++ +P V+ NGV II +L DE +
Sbjct: 245 QMAESYLKDKKRVLPVAAQLSGQYGV-KDMYVGVPTVIGANGVERIIEIDLDKDEKAQFD 303
Query: 475 KSAATISQIQKGL 487
KS A+++ + +
Sbjct: 304 KSVASVAGLCEAC 316
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-113
Identities = 78/313 (24%), Positives = 155/313 (49%), Gaps = 12/313 (3%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
+KI+++GAG VG + + + + + L+D E +G+ LDL +P ++
Sbjct: 3 KKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG 61
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
++ A + S ++++T+G G +R L+ N I + I + A SP+ ++++++NP
Sbjct: 62 TNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 121
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D +TY++ ++SGFPK RVIG LD+ R+R +A + G+S E V ++G HGD VP
Sbjct: 122 LDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVP 181
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ ++G+ + E + ++ E++ L G +A + A
Sbjct: 182 LPRFSCISGIPVSEF-------IAPDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATA 234
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474
+ +L + ++ V+ + G +G+ +++ +P ++ GV I+ L +E L
Sbjct: 235 QMVEAVLKDKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKILELPLNEEEMALLN 293
Query: 475 KSAATISQIQKGL 487
SA + L
Sbjct: 294 ASAKAVRATLDTL 306
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 | Back alignment and structure |
|---|
Score = 334 bits (858), Expect = e-112
Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 10/316 (3%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS-PKIES 236
KI +VG+G +G I+ + + + L D ++ G+ LD H S K+
Sbjct: 5 AKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGET-----RLQLVDRNVKIFKDLIPKIAKGSPDCILL 291
+ G+ +VI+TAG G++ R L+ N KI ++ I K P+ ++
Sbjct: 64 SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 292 IISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHG 351
+++NPVDV+ + + SG PKN++IG G LD+ R + ++QKL + P V+ I+G HG
Sbjct: 124 VVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHG 183
Query: 352 DSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGL 411
+ V + + V G+ L+E + VN+A E++ L A
Sbjct: 184 NKMVLLKRYITVGGIPLQEFINNKLISDAELE--AIFDRTVNTALEIVNLHASPYVAPAA 241
Query: 412 SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAE 471
++ ++ + L + K+ STL++G +G ++F P V+ NGV +I L +E
Sbjct: 242 AIIEMAESYLKDLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 472 KLRKSAATISQIQKGL 487
K ++ A +++
Sbjct: 301 KFDEAIAETKRMKALA 316
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 | Back alignment and structure |
|---|
Score = 331 bits (850), Expect = e-111
Identities = 89/314 (28%), Positives = 161/314 (51%), Gaps = 8/314 (2%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-KIES 236
+KIT+VGAG +G + L + + + L D + G+ LDL P K+
Sbjct: 6 KKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
+D E S +VI+TAGV G +R L+ N+K+ + + I P+ ++ I+NP
Sbjct: 65 TNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNP 124
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVP 356
+D++ + K SG P N+++G LDS RFR LA +L +S + V +++G HGD+ VP
Sbjct: 125 LDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTMVP 184
Query: 357 VWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVA 414
+ NVAGV+L++L +Q+ + + + + E++ L G +A +
Sbjct: 185 LTKMSNVAGVSLEQLVKEGKLKQERLD--AIVSRTRSGGGEIVALLKTGSAYYAPAAAGI 242
Query: 415 SISHTLLNNTNKIHAVSTLIQ-GHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKL 473
++ + L + I + ++ G +G++E++F+ +P ++ NGV I ++ E E+L
Sbjct: 243 QMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGV-RPIEVEISDKEREQL 301
Query: 474 RKSAATISQIQKGL 487
+ S I + K
Sbjct: 302 QVSINAIKDLNKAA 315
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 | Back alignment and structure |
|---|
Score = 328 bits (843), Expect = e-110
Identities = 97/316 (30%), Positives = 163/316 (51%), Gaps = 14/316 (4%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLID--SNEDRCKGEMLDLQHGAPFLRS-PKI 234
+K++V+GAG G + + + + ++ L+D E+ KG+ LD+ +P I
Sbjct: 9 KKVSVIGAGFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI 67
Query: 235 ESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294
SD A + S +V+ITAG+ G +R LV N KI K + IAK SP+ I+++++
Sbjct: 68 IGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127
Query: 295 NPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSS 354
NPVD +TY +K +GFPK RVIG LD+ RFR +AQ+L LS + + GF++G HGD
Sbjct: 128 NPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGDDM 187
Query: 355 VPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALGLS 412
VP+ G+ L+ L E + E++ L G +A S
Sbjct: 188 VPLVRYSYAGGIPLETL-------IPKERLEAIVERTRKGGGEIVGLLGNGSAYYAPAAS 240
Query: 413 VASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEK 472
+ ++ +L + ++ ++G +G +++L +P ++ NG+ II L DE E
Sbjct: 241 LVEMTEAILKDQRRVLPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKIIELELLADEKEA 299
Query: 473 LRKSAATISQIQKGLL 488
L +S ++ + K L+
Sbjct: 300 LDRSVESVRNVMKVLV 315
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 2e-65
Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 11/314 (3%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+T+VGA G +G + + N CL D +G +++H + S
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSD 69
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI-ISNP 296
A+ ++ ++ + G G TR L+ N +I L I PDC +I I NP
Sbjct: 70 IKEAL-TDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128
Query: 297 VDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSV 355
D+ ++ SG ++V LDS R + LA+ G+ V G HG+
Sbjct: 129 ADITGLVTLIYSGLKPSQVTT-LAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMA 187
Query: 356 PVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW-ALGLSVA 414
S V G L +L T + L VV +IKL+G +S+ +
Sbjct: 188 VFASTAKVNGTPLTDLIGTDKLTNEQWA--ELKQRVVKGGANIIKLRGRSSFQSPSYVSI 245
Query: 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPD-EAEKL 473
+ + + G E + +++ + +GV H L + E L
Sbjct: 246 EMIRAAMGGEAFRWPAGCYVNV-PGF-EHIMMAMETTITKDGVKHSDINQLGNEAERAAL 303
Query: 474 RKSAATISQIQKGL 487
++S + +++++ +
Sbjct: 304 KESYSHLAKLRDEV 317
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 7e-47
Identities = 84/323 (26%), Positives = 136/323 (42%), Gaps = 31/323 (9%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES 236
K+ V+GA G +G A + TQ S L D G +DL H ++
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSG 60
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
EG+ +V+I+AGV G R L + N I K+L+ ++AK P + II+NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 297 VDVLTYISW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGD 352
V+ I+ K + KN++ G T LD +R +A+ G P V +IG H
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTT-LDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 353 SS-VPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK-GYTS--WA 408
+ +P+ S V GV+ TEQ+ + + + N+ EV++ K G S +
Sbjct: 180 VTILPLLS--QVPGVSF--------TEQEVADLTK---RIQNAGTEVVEAKAGGGSATLS 226
Query: 409 LGLSVASISHTLLNNTN--KIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNL 465
+G + A +L+ + ++G + F S P ++ NGV + L
Sbjct: 227 MGQAAARFGLSLVRALQGEQGVVECAYVEGD--GQYARFFSQPLLLGKNGVEERKSIGTL 284
Query: 466 TPDEAEKLRKSAATI-SQIQKGL 487
+ E L T+ I G
Sbjct: 285 SAFEQNALEGMLDTLKKDIALGE 307
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 3e-46
Identities = 74/327 (22%), Positives = 122/327 (37%), Gaps = 31/327 (9%)
Query: 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPK 233
+P K+ ++GA G +G + + S L D G D+ H
Sbjct: 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG 63
Query: 234 IESGSDIAMS-EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292
+ + G ++I+ AGV G TR L N I K L IAK P I+ +
Sbjct: 64 FLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNL 123
Query: 293 ISNPVDVLTYIS----WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348
ISNPV+ I+ K + R++G LD +R +A+ LGL P V ++G
Sbjct: 124 ISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTM-LDVVRANTFVAEVLGLDPRDVDVPVVG 182
Query: 349 EH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK-GYTS 406
H G + +P+ S V T+++ + N EV++ K G S
Sbjct: 183 GHAGVTILPLLSQVKPPSSF---------TQEEISYLTD---RIQNGGTEVVEAKAGAGS 230
Query: 407 --WALGLSVASISHTLLNNTNKIHAV--STLIQGHHGIEEEVFLSLPCVMADNGVTHIIN 462
++ + + L V + E F + + NG+ + +
Sbjct: 231 ATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVT--ELPFFASKVRLGRNGIEEVYS 288
Query: 463 -QNLTPDEAEKLRKSAATI-SQIQKGL 487
L E L K+ + I+KG+
Sbjct: 289 LGPLNEYERIGLEKAKKELAGSIEKGV 315
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 6e-46
Identities = 72/324 (22%), Positives = 120/324 (37%), Gaps = 35/324 (10%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIES 236
K+ V+GA G +G + + + S L D G DL H +
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGP 59
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
+G +V+I AGV G TR L + N I L A+ PD ++ IISNP
Sbjct: 60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119
Query: 297 VDVLTYISW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEH-G 351
V+ I+ K + N++ G T LD +R +A+ GL P V +IG H G
Sbjct: 120 VNSTIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANAFVAELKGLDPARVSVPVIGGHAG 178
Query: 352 DSSVPVWSGVNVAG-VTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG------Y 404
+ +P+ S +L+ G Q + EV+K K
Sbjct: 179 KTIIPLISQCTPKVDFPQDQLSTLTGRIQ-------------EAGTEVVKAKAGAGSATL 225
Query: 405 TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-Q 463
+ G +N + S + + S P ++ G+ +
Sbjct: 226 SMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCP---YFSTPLLLGKKGIEKNLGIG 282
Query: 464 NLTPDEAEKLRKSAATI-SQIQKG 486
++P E + + ++ + + I+KG
Sbjct: 283 KISPFEEKMIAEAIPELKASIKKG 306
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 3e-41
Identities = 57/317 (17%), Positives = 116/317 (36%), Gaps = 25/317 (7%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLID----SNEDRCKGEMLDLQHGA-P 227
++ V GA GQ+ + + I + L++ + +G M+++ A P
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFP 66
Query: 228 FLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSP 286
L + A + + + ++ G R L++ N +IF I S
Sbjct: 67 LLAGMTAHADPMTAF-KDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASR 125
Query: 287 DCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFI 346
+ +L++ NP + YI+ K + + + LD R +A K G S+
Sbjct: 126 NIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLF 185
Query: 347 I-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTEN-FVRLHADVVNSAYEVIKLKGY 404
+ G H + + + G ++K++ I + + F+ V +I +G
Sbjct: 186 VWGNHSPTMYADYRYAQIDGASVKDM---INDDAWNRDTFL---PTVGKRGAAIIDARGV 239
Query: 405 TSWALGLSVASISHT---LLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII 461
+S A + A+I H +L K + G +GI E V P + +
Sbjct: 240 SSAASA-ANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQ 298
Query: 462 NQNLTPDEAEKLRKSAA 478
++ E++ +
Sbjct: 299 GLSIDAFSQERINVTLN 315
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-40
Identities = 63/318 (19%), Positives = 116/318 (36%), Gaps = 23/318 (7%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDS--NEDRCKGEMLDLQHGA-PFL 229
++ V GA GQ+ + YSI ++ L+D G +++LQ A P L
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64
Query: 230 RSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DC 288
+ +IA + + I+ + G R L+ NVKIFK + K +
Sbjct: 65 KDVIATDKEEIAF-KDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 289 ILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII- 347
++++ NP + + K + T LD R + +A KLG++ + V II
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 348 GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQD--TENFVRLHADVVNSAYEVIKLKGYT 405
G H + P + V + + F+ V VIK + +
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFI---TTVQQRGAAVIKARKLS 240
Query: 406 SWALGLSVASISH----TLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHI 460
S + A H + ++ + G+ G+ +++ S P + D +
Sbjct: 241 SAMSA-AKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIV 299
Query: 461 INQNLTPDEAEKLRKSAA 478
+ EK+ +A
Sbjct: 300 EGLPINDFSREKMDLTAK 317
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-39
Identities = 66/317 (20%), Positives = 126/317 (39%), Gaps = 27/317 (8%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDS--NEDRCKGEMLDLQHGA-PFL 229
++ V GA GQ+G + + I + L++ +G +++L+ A P L
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65
Query: 230 RSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-D 287
+E+ D + + ++ G R L+ N KIF + +A+ + D
Sbjct: 66 AG--LEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 288 CILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347
+L++ NP + I++K + R + T LD R + LA+K G + + +
Sbjct: 124 VKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTV 183
Query: 348 -GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTS 406
G H + P V G EL + E + F+ V +I+ +G +S
Sbjct: 184 WGNHSSTMFPDLFHAEVDGRPALEL---VDMEWYEKVFIPT---VAQRGAAIIQARGASS 237
Query: 407 WALGLSVASISH----TLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHII- 461
A + A+I H L +++ QG +GI E + S P A +G ++
Sbjct: 238 AASA-ANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVT-AKDGAYRVVE 295
Query: 462 NQNLTPDEAEKLRKSAA 478
+ +++ +A
Sbjct: 296 GLEINEFARKRMEITAQ 312
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 2e-39
Identities = 67/316 (21%), Positives = 120/316 (37%), Gaps = 22/316 (6%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIY---SNFCL----IDSNEDRCKGEMLDLQHGA-PFL 229
I V GA G + + + + ++ L + + +G ++L+ P L
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 93
Query: 230 RSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDC 288
R I E ++ G R L+D N +IF D + S +
Sbjct: 94 REVSIGIDPYEVF-EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNV 152
Query: 289 ILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII- 347
+L++ NP + I K + + + T LD R + LA K G+ + V I
Sbjct: 153 KVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIW 212
Query: 348 GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSW 407
G H + VP + + G +KE+ I + E V +I+ G +S
Sbjct: 213 GNHSTTQVPDFLNAKIDGRPVKEV---IKRTKWLEE--EFTITVQKRGGALIQKWGRSSA 267
Query: 408 AL-GLSVASISHTLLNNTN--KIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHII-N 462
A +S+A +L+ T + G+ GI E++ S+PC +G + +
Sbjct: 268 ASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATD 327
Query: 463 QNLTPDEAEKLRKSAA 478
+ E+++KS A
Sbjct: 328 VSNDDFLWERIKKSEA 343
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 4e-16
Identities = 80/582 (13%), Positives = 166/582 (28%), Gaps = 189/582 (32%)
Query: 30 LSSKAENIIRGLTEGTET------AKALSSRNRGGRQDRRKPAVPRTL--SGQDKICPGL 81
L SK E +++ E + + R P++ + +D+ L
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-------PSMMTRMYIEQRDR----L 119
Query: 82 ESNPQPSAYKTDAPPTKLARLATSTMARDAVSTVDRLLSQVAPSIESPDQKITVVGAGQV 141
++ Q ++RL R A L ++ P + + + G
Sbjct: 120 YNDNQV------FAKYNVSRLQPYLKLRQA-------LLEL-----RPAKNVLIDG---- 157
Query: 142 GMA-CTYSILTQTMARDAVSTVDRLLSQVAPSI--------ESPDQKITVVGAGQVGMAC 192
+ + + + ++ ++ I SP+ + ++ +
Sbjct: 158 -VLGSGKTWVALDVCLS-----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 193 TYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-----RSPKIESGSDIAMSEGSR 247
++ + + I S + + + + L ++ K + ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCK 267
Query: 248 IVIIT--AGV-RSLVGETRLQLV----------DRNVKIF--------KDLIPKIAKGSP 286
I++ T V L T + D + +DL ++ +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 287 DCILLI---ISNPVDVLTYISWKLSGFPK-NRVIGSG-TNLDSMRFRVLLAQKLGLSPES 341
+ +I I + + WK K +I S L+ +R + +L + P S
Sbjct: 328 RRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPS 384
Query: 342 VHGFIIGEHGDSSVP------VWSGV--NVAGVTLKEL-----------NPTIG------ 376
H +P +W V + V + +L TI
Sbjct: 385 AH-----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 377 -TEQDTENFVRLHADVVNSAYEVIK-----------LKGYTSWALG--LSVASISH--TL 420
+ EN LH +V+ Y + K L Y +G L TL
Sbjct: 434 ELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 421 LNNT--------NKIHAVSTL--------------------IQGHHGIEEEV------FL 446
KI ST I + E + FL
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 447 SLP---CVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQK 485
+ + T ++ L ++ E + + A Q+Q+
Sbjct: 553 PKIEENLICSKY--TDLLRIALMAED-EAIFEEAHK--QVQR 589
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 2e-07
Identities = 38/214 (17%), Positives = 78/214 (36%), Gaps = 45/214 (21%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNF-----CLIDSNEDRCK--GEMLDLQHGAPFLRS 231
KI +G G G S+++ L D + + + + + +
Sbjct: 7 KIAYIGGGSQGW--ARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRW--- 61
Query: 232 PKIESGSDI--AMSEGSRIVIITAGVRSL----------------------VGETRLQLV 267
+ E+ S + A+ + IVII+ SL VG +
Sbjct: 62 -RYEAVSTLKKAL-SAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRG 119
Query: 268 DRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG--SGTNLDSM 325
R V IF ++ I +P+ ++ +NP+ V T + +K+ FP + IG
Sbjct: 120 LRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV--FPGIKAIGCCHEVFGTQK 177
Query: 326 RFRVLLAQKLGL---SPESVHGFIIGEHGDSSVP 356
++ ++LG+ E + ++G + + +
Sbjct: 178 LLAEMVTERLGIEVPRREDIRVNVLGINHFTWIT 211
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 2e-07
Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 58/235 (24%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFC------------LIDSNEDRCK--GEMLDL-- 222
I + G G S T GI L D++++R D+
Sbjct: 30 SIVIAGGG--------STFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI 81
Query: 223 -QHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSL--------------------VG 260
+ + + +D V+ V G
Sbjct: 82 REKAPDI----EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCG 137
Query: 261 ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGT 320
+ R++ +++ + K SPD +L SNP ++ + +L P ++++
Sbjct: 138 PGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL--RPNSKILNICD 195
Query: 321 NLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTI 375
+ R +AQ LGLS + + + W ++ +L P +
Sbjct: 196 MPVGIEDR--MAQILGLSS---RKEMKVRYYGLNHFGW-WTSIQDQEGNDLMPKL 244
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 7e-07
Identities = 41/213 (19%), Positives = 71/213 (33%), Gaps = 45/213 (21%)
Query: 176 PDQKITVVGAGQVGMACTYSILTQGIY-------SNFCLIDSNEDRCKGEMLDLQHGAPF 228
P KI ++GAG + L + S L+D +E+R + +
Sbjct: 2 PSVKIGIIGAGSAVFS---LRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE 58
Query: 229 L-RSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVD------------------ 268
+ K E ++ + + VI TA V +++ +
Sbjct: 59 VGADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVS 118
Query: 269 --------RNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGT 320
+K F D+ KI K SP L +NP+ T ++ + +G
Sbjct: 119 DYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT---TLVTRTVPIKAVGFCH 175
Query: 321 NLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGD 352
+ + +KLGL E V + G HG
Sbjct: 176 GHYGVME---IVEKLGLEEEKVDWQVAGVNHGI 205
|
| >1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 483 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 3e-05
Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 27/225 (12%)
Query: 132 KITVVGAGQVGMACTYSILTQTMARDAVSTVDRLLSQVAPSIESPDQKITVVG--AGQVG 189
KI+++GAG V A ++ + +S D + + + + ++
Sbjct: 14 KISIIGAGSVRFALQ--LVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELN 71
Query: 190 MACTYSILTQ----GIYSNFCL--IDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS 243
+ ++F + + R S + + + +
Sbjct: 72 SPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHD-----------SGSQRWDEVTKVGEK 120
Query: 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI 303
G I + + + T + ++K+ ++ K+ K +P L+ +NPV +T
Sbjct: 121 HGYYRGIDSQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEIT-- 178
Query: 304 SWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348
+ + ++G + + +KL L PE V + G
Sbjct: 179 -QAVRRWTGANIVGF---CHGVAGVYEVFEKLDLDPEEVDWQVAG 219
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 7e-05
Identities = 38/211 (18%), Positives = 67/211 (31%), Gaps = 58/211 (27%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFC------------LIDSNEDRCKGEMLDLQHGA 226
KI +G G S T + L+D E + K E++
Sbjct: 9 KIATIGGG--------SSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIV-----G 55
Query: 227 PFLRSPKIESGSDIAMS---------EGSRIVIITAGVRSL------------------- 258
+ ++G I + +G+ V V L
Sbjct: 56 ALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQE 115
Query: 259 -VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
G L R + + D+I + + PD L+ +NP ++T + + +V+G
Sbjct: 116 TNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY--TKQEKVVG 173
Query: 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348
MR +A+ LG+ + VH G
Sbjct: 174 LCNVPIGMRMG--VAKLLGVDADRVHIDFAG 202
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 488 | |||
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 100.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 100.0 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 100.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 100.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 100.0 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 100.0 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 100.0 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 100.0 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 100.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 100.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 100.0 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 100.0 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 100.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 100.0 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 100.0 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 100.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 100.0 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 100.0 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 100.0 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 100.0 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 100.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 100.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 100.0 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 100.0 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 100.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 100.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 100.0 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 100.0 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 100.0 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 100.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 100.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 100.0 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 100.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 100.0 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 100.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 100.0 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 100.0 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 100.0 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 100.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 100.0 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 100.0 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 100.0 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 100.0 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.29 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.16 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.94 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.9 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.87 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.87 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.84 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.84 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.83 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.77 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.66 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.44 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.38 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.35 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.31 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.31 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.29 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.27 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.19 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.19 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.18 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.16 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 98.14 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.12 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.1 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 98.08 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 98.06 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.05 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.04 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.01 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.01 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.01 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.0 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.98 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.97 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.93 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.91 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.9 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.89 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.89 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.88 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.87 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.85 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.85 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.85 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.83 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.82 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.81 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.79 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.78 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.78 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.78 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.77 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.73 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.73 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.73 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.72 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.72 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.71 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.71 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.7 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.68 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.68 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.67 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.67 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.65 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.61 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.61 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.6 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.6 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.59 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.55 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.55 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.53 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.52 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.52 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.52 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.51 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.49 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.47 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.47 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.41 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.35 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 97.33 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.32 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 97.31 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.28 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 97.28 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.27 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.24 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.18 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 97.17 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.17 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.15 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.1 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.1 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 97.04 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.0 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.98 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 96.97 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.95 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.91 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.91 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.9 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 96.88 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 96.8 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 96.79 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 95.68 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.64 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 96.55 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.54 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.51 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 96.49 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.48 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.48 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 96.46 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.46 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 96.41 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.39 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.37 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.36 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.35 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.33 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.32 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.32 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.29 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 96.29 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 96.25 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.23 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.21 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.18 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.18 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.18 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.16 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.14 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.13 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.12 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 96.11 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.1 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.1 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.08 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 96.06 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 96.04 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.01 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 96.01 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 95.99 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.98 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.98 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 95.97 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 95.94 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.93 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 95.93 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 95.93 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 95.92 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.92 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 95.89 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 95.87 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.87 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.86 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 95.86 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 95.84 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 95.83 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 95.83 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 95.83 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.83 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.81 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 95.81 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 95.81 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.77 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 95.73 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 95.73 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 95.72 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 95.71 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.71 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 95.7 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 95.7 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 95.69 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.69 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 95.69 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 95.66 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 95.65 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 95.64 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 95.64 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.64 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.64 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 95.64 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 95.6 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 95.6 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 95.59 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 95.58 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 95.58 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 95.58 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.57 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 95.56 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.56 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 95.54 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 95.53 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 95.53 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.53 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.53 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.52 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 95.52 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.49 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 95.48 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.48 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.45 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.44 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 95.43 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 95.43 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 95.43 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 95.43 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.42 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 95.42 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.42 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.4 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.4 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.4 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 95.4 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.39 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 95.39 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.39 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 95.38 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 95.38 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 95.37 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 95.36 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.36 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.35 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.35 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.35 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 95.35 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 95.34 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 95.33 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.28 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 95.28 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.28 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 95.27 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 95.26 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.26 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 95.25 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 95.24 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.22 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 95.21 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.2 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.2 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 95.2 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 95.19 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 95.15 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 95.15 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 95.13 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 95.12 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 95.12 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 95.12 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 95.11 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.1 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 95.08 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 95.08 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 95.08 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 95.07 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.06 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 95.06 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 95.05 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 95.04 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 95.03 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 95.02 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.01 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 94.99 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 94.98 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 94.98 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 94.97 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.97 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 94.97 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 94.97 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 94.96 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 94.93 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 94.91 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 94.91 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.91 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 94.91 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 94.91 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 94.9 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 94.89 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 94.89 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 94.89 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 94.86 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 94.85 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 94.85 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.85 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 94.84 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 94.82 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 94.82 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 94.8 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 94.79 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 94.79 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.78 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 94.78 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 94.77 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.77 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.77 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.76 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.76 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.76 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 94.75 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 94.74 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 94.74 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.74 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 94.73 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.73 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 94.73 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 94.73 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 94.72 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 94.72 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 94.72 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 94.71 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 94.71 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 94.71 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 94.71 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 94.7 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 94.7 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.7 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 94.69 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 94.69 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 94.68 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 94.68 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 94.67 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 94.66 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 94.65 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.65 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.64 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 94.63 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 94.62 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 94.62 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 94.61 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 94.61 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 94.6 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 94.59 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 94.59 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 94.59 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 94.57 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.57 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 94.57 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 94.57 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 94.57 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 94.56 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 94.55 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 94.55 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 94.53 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 94.53 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 94.51 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 94.49 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 94.49 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 94.47 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.44 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 94.43 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 94.43 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 94.42 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 94.42 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 94.42 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 94.42 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.41 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 94.4 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 94.39 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 94.38 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 94.35 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 94.34 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 94.32 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.31 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 94.3 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 94.3 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.29 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.28 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 94.27 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 94.27 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.27 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.26 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 94.24 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 94.24 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 94.23 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 94.23 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.22 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.16 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.16 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 94.16 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 94.15 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 94.14 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 94.13 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 94.13 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.13 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 94.12 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 94.09 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 94.08 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 94.08 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 94.06 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.06 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 94.04 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.98 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 93.97 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 93.97 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 93.96 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 93.94 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 93.93 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 93.92 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 93.92 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 93.89 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 93.86 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 93.86 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 93.83 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 93.82 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 93.79 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 93.79 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 93.79 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 93.78 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 93.77 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.77 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 93.76 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 93.76 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 93.76 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 93.74 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 93.74 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.74 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 93.71 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 93.71 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 93.71 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 93.71 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 93.65 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 93.64 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 93.64 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 93.64 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 93.64 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 93.6 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.59 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.58 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 93.58 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 93.58 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 93.57 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 93.56 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 93.55 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 93.54 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 93.53 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 93.51 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 93.48 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 93.47 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 93.46 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.46 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.45 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 93.44 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 93.42 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 93.37 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 93.37 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 93.36 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 93.35 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 93.34 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 93.34 |
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-69 Score=552.90 Aligned_cols=315 Identities=58% Similarity=1.009 Sum_probs=298.3
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
...+.+||+|||||.||+++++.|+.+++.++|+|+|++++++++.++||+|+..+....++..++||++++|||+||++
T Consensus 15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~ 94 (331)
T 4aj2_A 15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIIT 94 (331)
T ss_dssp --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEEC
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEc
Confidence 45678899999999999999999999999899999999999999999999998655556678778899999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLA 332 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA 332 (488)
+|.|++||++|.|++.+|+++++++++.|+++||++|++++|||+|++|++++++++||++||||+||.||+.|+++++|
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~~k~sg~p~~rviG~gt~LD~~R~~~~la 174 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMG 174 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHHhCCCHHHEEeeccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHH
Q psy12825 333 QKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLS 412 (488)
Q Consensus 333 ~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a 412 (488)
+++|++|++|+++||||||++++|+||+++++|+|+.++.+..+..+++++|+++.+++++++++|++.||+++|++|++
T Consensus 175 ~~lgv~~~~V~~~ViGeHG~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~t~~a~a~a 254 (331)
T 4aj2_A 175 ERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLS 254 (331)
T ss_dssp HHHTSCGGGCBCCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHhCCCHHHCEEeEEecCCCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcCCCCchhHHHH
Confidence 99999999999999999999999999999999999999876543345677899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 413 VASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 413 ~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++++|++|++.++|+|++++|+||+++++|||+||++|++|++++++++|+++|+++|++|++.|+++++++
T Consensus 255 ~a~~~~ail~d~~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~~~~~~ 329 (331)
T 4aj2_A 255 VADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKEL 329 (331)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998999999999999999999999999999999999999999988875
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-67 Score=531.94 Aligned_cols=310 Identities=39% Similarity=0.709 Sum_probs=270.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+++||+|||||.||+++++.|+.+++.++|+|+|++++++++.++||+|...+....++ .+++|++++|||+||+++|
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i-~~~~~~a~~~aDiVvi~ag 85 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI-YSAEYSDAKDADLVVITAG 85 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE-EECCGGGGTTCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEE-EECcHHHhcCCCEEEECCC
Confidence 356899999999999999999999999899999999999999999999998643323333 3567999999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
.|++||++|.|++.+|+++++++++.|.++||++|++++|||+|++|++++++++||++||||+||.||+.|+++++|++
T Consensus 86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la~~ 165 (326)
T 3vku_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKM 165 (326)
T ss_dssp CC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHHHHhcCCCHHHeeeecccCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~ 414 (488)
+|++|++|+++||||||++++|+||+++++|+|+.++.+.... +++++++++.+++++++++|++.||+++|++|++++
T Consensus 166 lgv~~~~V~~~ViGeHGdt~vp~~S~a~v~g~pl~~~~~~~~~-~~~~~~~~i~~~v~~~g~eIi~~kG~t~~a~a~a~~ 244 (326)
T 3vku_A 166 VNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPE-IKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALA 244 (326)
T ss_dssp HTSCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHHCTT-SCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hCCCHHHCeEEEEcCCCCeeEEeeeccccCCEEHHHHhccccC-CCHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999887643211 356778999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++|+++++.++|+|++++|+||++ |+|||+||++|++|++++++++|+++|+++|++|+++|++.++.+
T Consensus 245 ~~~~ail~~~~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~sa~~L~~~~~~~ 316 (326)
T 3vku_A 245 RISKAILNDENAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDA 316 (326)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEEGGGEE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhcCCCceEEEEeeccCccCCC-ceEEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 899999999999999999999999999999999999999776543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-66 Score=525.10 Aligned_cols=309 Identities=39% Similarity=0.696 Sum_probs=288.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag 254 (488)
+.+||+|||+|.||+++++.|+..++.++|+|+|++++++++.++||+|...+. ...++ .++++++++|||+||+++|
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i-~~~~~~a~~~aDvVvi~ag 82 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKT-SYGTYEDCKDADIVCICAG 82 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEE-EEECGGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEE-EeCcHHHhCCCCEEEEecc
Confidence 467999999999999999999999988899999999999999999999984332 22344 3567899999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
.|++||++|.|++..|+++++++++.|.++||++|++++|||+|++|++++++++||++||||+||.||+.|+++++|++
T Consensus 83 ~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la~~ 162 (326)
T 3pqe_A 83 ANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEY 162 (326)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHHHHhcCCCHHHEEeeccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~ 414 (488)
+|++|++|+++||||||++++|+||+++++|+|+.++.+..+. +++++++++.+++++++++|++.||+++|++|++++
T Consensus 163 lgv~~~~V~~~V~GeHG~t~vp~~S~~~v~g~p~~~~~~~~~~-~~~~~~~~i~~~v~~~g~eIi~~kG~t~~a~a~a~~ 241 (326)
T 3pqe_A 163 FGAAPQNVCAHIIGEHGDTELPVWSHANVGGVPVSELVEKNDA-YKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLA 241 (326)
T ss_dssp HTCCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHTCTT-SCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hCCCHHHceeeeeecCCCceeeeeeeeeECCEEHHHHhhcccC-CCHHHHHHHHHHHHhhhheeeeCCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999887643221 356778999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++|+++++.++|+|++++|+||++ |+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 242 ~~~~ail~~~~~v~~~s~~~~g~yg~~-~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~~~~~~ 313 (326)
T 3pqe_A 242 RITKAILHNENSILTVSTYLDGQYGAD-DVYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNILKPH 313 (326)
T ss_dssp HHHHHHHTTCCEEECCEEEEESGGGCE-EEEEECCEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCcEEEEEEeeccccCCC-ceEEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999997 899999999999999999999999999999999999999988765
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-64 Score=513.61 Aligned_cols=308 Identities=37% Similarity=0.649 Sum_probs=289.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+||+|||||++|+++++.|+.+++.+||+|+|++++++++.++|+.|...+....++.. +++++++||||||++++.++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~~~~a~~~aD~Vii~ag~~~ 79 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-GSYGDLEGARAVVLAAGVAQ 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-CCGGGGTTEEEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-CCHHHhCCCCEEEECCCCCC
Confidence 69999999999999999999999989999999999999999999999764434556665 57899999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
+||++|.|++.+|++++++++++|+++||++|+|++|||+|++|+++++++++|++||||+||.||+.|+++++|+++|+
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~lgv 159 (310)
T 2xxj_A 80 RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRV 159 (310)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEECTTHHHHHHHHHHHHHHHTS
T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEecCcchhHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
+|++|+++||||||++++|+||+++++|.|+.++.++....++++.++++.+++++++++|++.||+++|++|.++++++
T Consensus 160 ~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~ 239 (310)
T 2xxj_A 160 APQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLV 239 (310)
T ss_dssp CGGGEEEEEEBCSSTTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CHHHeEEEEecccCCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876543323567788999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|++|++.++++|++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 240 ~ai~~~~~~~~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 308 (310)
T 2xxj_A 240 RAILTDEKGVYTVSAFTPEVAGV-LEVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILKEAAFAL 308 (310)
T ss_dssp HHHHTTCCEEEEEEEEEEEETTE-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEEEEEEcCccCC-ccEEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 8999999999999999999999999999999999999999988764
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-65 Score=515.33 Aligned_cols=303 Identities=32% Similarity=0.563 Sum_probs=287.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC--hhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEe
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN--EDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~--~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIit 252 (488)
+.+||+|||+|.||+++++.++..++ ++|+|+|++ ++++++.++|+.|...+. ...++..++||++++|||+||++
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIia 85 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVIT 85 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEe
Confidence 45799999999999999999999998 899999999 889999999999874221 35678888899999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLA 332 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA 332 (488)
+|.|++||++|.|++.+|+++++++++.|.++||++|++++|||+|++|++++|++|||++||||+||.||+.|+++++|
T Consensus 86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~~k~sg~p~~rviG~gt~LD~~R~~~~la 165 (315)
T 3tl2_A 86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIA 165 (315)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHHHHhcCCChHHEEeeccCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH--hcCCcchhhH
Q psy12825 333 QKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK--LKGYTSWALG 410 (488)
Q Consensus 333 ~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~--~kg~t~~s~A 410 (488)
+++|++|++|+++||||||+++||+||+++++|+|+.+++ +++.++++.+++++++++|++ .||+++|++|
T Consensus 166 ~~lgv~~~~v~~~viG~Hg~t~vp~~S~~~v~g~p~~~~~-------~~~~~~~i~~~v~~~g~eii~~~~kgst~~a~a 238 (315)
T 3tl2_A 166 QELNLSVKDITGFVLGGHGDDMVPLVRYSYAGGIPLETLI-------PKERLEAIVERTRKGGGEIVGLLGNGSAYYAPA 238 (315)
T ss_dssp HHHTCCGGGEECCEEBCSGGGCEECGGGCEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHH
T ss_pred HHhCcCHHHceeeEecCCCCcceeecccCeECCEEHHHhC-------CHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence 9999999999999999999999999999999999998864 366788999999999999999 7899999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 411 LSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 411 ~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++++++|+++++.++|++++++|+||+ +|+|||+||+++++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 239 ~a~~~~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~ 314 (315)
T 3tl2_A 239 ASLVEMTEAILKDQRRVLPAIAYLEGEYGY-SDLYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVRNVMKVL 314 (315)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeccCccCC-CceEEEEEEEEeCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 5999999999999999999999999999999999999999999876
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-65 Score=515.46 Aligned_cols=302 Identities=28% Similarity=0.552 Sum_probs=277.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||+|||||.||+++++.|+.+++.++|+|+|++++++++.++||+|...+. ...++..+++|++++|||+||+++|.|
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 6999999999999999999999998899999999999999999999975321 245676677899999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
++||++|.|++.+|+++++++++.|.++||++|++++|||+|++|++++|++|||++||||++|.||+.|+++++|+++|
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~~g~p~~rviG~~t~LD~~R~~~~la~~lg 160 (314)
T 3nep_X 81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELD 160 (314)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHHHHHHTCCGGGEEECCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHHHHhcCCChHHEEeecCchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcC-CcchhhHHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG-YTSWALGLSVAS 415 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg-~t~~s~A~a~~~ 415 (488)
++|++|+++||||||++++|+||+++++|+|+.++. +++.++++.+++++++++|++.|| +++|++|+++++
T Consensus 161 v~~~~v~~~ViG~Hg~t~vp~~S~~~v~g~p~~~~~-------~~~~~~~i~~~v~~~g~eIi~~kg~sa~~a~a~a~~~ 233 (314)
T 3nep_X 161 VSVRDVQALLMGGHGDTMVPLPRYTTVGGIPVPQLI-------DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAE 233 (314)
T ss_dssp CCGGGEEEEEEESSGGGEEEEEEEEEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred cCHHHeEEEEECCCCCcEEeeeecCeECcEehhhcc-------CHHHHHHHHHHHHHhHHHHHhccCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999998864 356789999999999999999998 889999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++|+++++.++|++++++|+||+ +++|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 234 ~~~ail~~~~~v~~~s~~~~g~yg~-~~~~~s~P~~lg~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~ 304 (314)
T 3nep_X 234 MTEAILKDNKRILPCAAYCDGEYGL-DDLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDL 304 (314)
T ss_dssp HHHHHHHTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEEEEeccccCC-CceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 5999999999999999999999999999999999999999887653
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-64 Score=513.42 Aligned_cols=308 Identities=35% Similarity=0.670 Sum_probs=278.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+++||+|||||++|+++++.|+.+++.+||+|+|++++++++.++|+.|...+....++.. +++++++||||||++++.
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~~~~a~~~aDvVii~ag~ 82 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-GEYSDCKDADLVVITAGA 82 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-CCGGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-CCHHHhCCCCEEEECCCC
Confidence 3479999999999999999999999999999999999999999999999864434455554 578999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
++++|++|.|++.+|++++++++++|+++||++|+|++|||+|++|++++++++||++||||+||.||+.|+++++|+++
T Consensus 83 ~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~l 162 (318)
T 1ez4_A 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQF 162 (318)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEeccccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
|++|++|+++||||||++++|+||+++++|.|+.++.+.. .++++.++++.+++++++++|++.||+++|++|.++++
T Consensus 163 gv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~ 240 (318)
T 1ez4_A 163 NVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ--GVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMR 240 (318)
T ss_dssp TCCGGGEECCEESSSSSSCEECGGGCEETTEEHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CcChhHEEEEEecccCCceEEEehhhcCCCeeHHHHhhcc--CCCHHHHHHHHHHHHHhhhhheeCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999999998876431 24577789999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++|++|++.++++|++++|+||++ |+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 241 ~~~ai~~~~~~~~~vs~~~~G~yg~~-~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 311 (318)
T 1ez4_A 241 ISKAILRDENAVLPVGAYMDGQYGLN-DIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLNDG 311 (318)
T ss_dssp HHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999999999999887654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=513.97 Aligned_cols=310 Identities=29% Similarity=0.479 Sum_probs=288.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIit 252 (488)
.|+.+||+|||+|.||+++++.|+..++. +|+|+|++++++++.++||+|...+ ....++..++|+++++|||+||++
T Consensus 2 ~m~~~kI~iiGaG~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ 80 (321)
T 3p7m_A 2 AMARKKITLVGAGNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVT 80 (321)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEc
Confidence 46778999999999999999999999987 9999999999999999999997421 134677777899999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLA 332 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA 332 (488)
+|.|++||++|.|++.+|++++++++++|.++||++++|++|||+|++|++++++++||++||||++|.||+.|++++||
T Consensus 81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~~~LD~~R~~~~la 160 (321)
T 3p7m_A 81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLA 160 (321)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEECHHHHHHHHHHHHH
T ss_pred CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHhcCCCHHHEEeeccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhH
Q psy12825 333 QKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALG 410 (488)
Q Consensus 333 ~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A 410 (488)
+++|++|++|+++||||||++++|+||+++++|+|+.++... ..++++.++++.+++++++++|++. +|+++|++|
T Consensus 161 ~~l~v~~~~v~~~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v~~~g~eIi~~~g~gsa~~~~a 238 (321)
T 3p7m_A 161 DELNVSVQQVQAYVMGGHGDTMVPLTKMSNVAGVSLEQLVKE--GKLKQERLDAIVSRTRSGGGEIVALLKTGSAYYAPA 238 (321)
T ss_dssp HHHTCCGGGEECCEEECSGGGEEECTTTCEETTEEHHHHHHT--TSSCHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHH
T ss_pred HHhCcCHHHceEeeecCcCCceeeeeeeceECCEehhhhccc--cCCCHHHHHHHHHHHHhhhHHHHHhcCCCChHHHHH
Confidence 999999999999999999999999999999999999887532 1245778899999999999999985 578899999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeec-CcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 411 LSVASISHTLLNNTNKIHAVSTLIQ-GHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 411 ~a~~~ii~aIl~~~~~v~~vsv~~~-G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++++++|++|++.++|++++++ |+||+++|+|||+||++|++|++++ +++|+++|+++|++|++.|++.++.+
T Consensus 239 ~a~~~~~~ail~~~~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l~L~~~E~~~l~~s~~~l~~~~~~~ 315 (321)
T 3p7m_A 239 AAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EVEISDKEREQLQVSINAIKDLNKAA 315 (321)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999 99999999999999999999887653
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-64 Score=506.16 Aligned_cols=291 Identities=36% Similarity=0.576 Sum_probs=277.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||+|||||.+|+++++.|+.+++.++|+|+|++++++++.++|++|... +....++..++|+++++|||+||+++|.|
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaag~~ 80 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECCCCC
Confidence 69999999999999999999999888999999999999999999998753 33456788788899999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
++||++|.|++.+|++++++++++|.++||+++++++|||+|++|++++|+++||++||||+||.||++|++++|| ++|
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la-~l~ 159 (294)
T 1oju_A 81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLY-NAG 159 (294)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSCCCTTSEEECSHHHHHHHHHHHHH-HTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCHHHEeecccccHHHHHHHHHH-HhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASI 416 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~i 416 (488)
++|++ +++||||||++++|+||+++++|.| +++++.+++++++++|++.||+++|++|++++++
T Consensus 160 v~~~~-~~~V~G~Hg~t~vp~~s~~~v~g~~---------------~~~~~~~~v~~~g~eii~~kG~t~~~~a~a~~~~ 223 (294)
T 1oju_A 160 ARNIR-RAWIIGEHGDSMFVAKSLADFDGEV---------------DWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM 223 (294)
T ss_dssp CBSCC-CCCEEBCSSTTCEECGGGCCCBSCC---------------CHHHHHHHHHTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCccC-ceEEEecCCCceeeecccceECCcC---------------hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 99999 9999999999999999999998876 2568999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 417 i~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++|++++++++|++++++|+||++ ++|||+||+++++|++ +++++|+++|+++|++|+++|++.++.+
T Consensus 224 ~~ail~~~~~v~~~s~~~~g~yg~~-~~~~s~P~~~g~~Gv~-v~~l~L~~~E~~~l~~s~~~l~~~~~~~ 292 (294)
T 1oju_A 224 VKAVVEDTGEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VADIKLSDEEIEKLRNSAKILRERLEEL 292 (294)
T ss_dssp HHHHHTTCCCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCeEEEEEecccccCCCC-ceEEEEEEEEeCCEEE-EecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999997 9999999999999999 9899999999999999999999998865
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-64 Score=512.64 Aligned_cols=309 Identities=39% Similarity=0.716 Sum_probs=284.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+.+||+|||||++|+++++.|+.+++.++|+|+|++++++++.++||.|...+....++.. +++++++||||||++++
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~~~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-AEYSDAKDADLVVITAG 85 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-CCGGGGGGCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-CCHHHhCCCCEEEEcCC
Confidence 35589999999999999999999999989999999999999999999999764333455554 57899999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
.++++|++|.|++.+|++++++++++|+++||++|+|++|||+|++|+++++++++|++||||+||.||+.|+++++|++
T Consensus 86 ~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~ 165 (326)
T 2zqz_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEM 165 (326)
T ss_dssp CC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCC-CCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNP-TIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~-~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~ 413 (488)
+|++|++|+++||||||++++|+||+++++|.|+.++.+ .. .++++.++++.++++.++++|++.||+++|++|.++
T Consensus 166 lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~e~~~~~~--~~~~~~~~~i~~~v~~~g~eii~~kG~t~~~~a~aa 243 (326)
T 2zqz_A 166 VNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP--EIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATAL 243 (326)
T ss_dssp HTCCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHHCT--TSCHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHH
T ss_pred hCCChhheEEEEecccCCceEeehhhceECCEEHHHhhcccc--cCCHHHHHHHHHHHHHhHHHHHHcCCCcHHHHHHHH
Confidence 999999999999999999999999999999999988754 21 245777899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++|++|++.++++|++++|+||+| |+|||+||++|++|++++++++|+++|+++|++|+++|++.++.+
T Consensus 244 ~~~~~ai~~~~~~~~~vsv~~~G~yg~~-~~~~svP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 316 (326)
T 2zqz_A 244 ARISKAILNDENAVLPLSVYMDGQYGLN-DIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDA 316 (326)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEEeccCccCCC-ceEEEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999888764
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-64 Score=504.59 Aligned_cols=291 Identities=36% Similarity=0.560 Sum_probs=272.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||+|||||.||+++++.|+.+++.+||+|+|+++++++|.++||+|+..+ ....++..++||++++|||+||+++|.|
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p 80 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence 799999999999999999999999999999999999999999999997643 3456788888999999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
|+|||+|.|++..|++|++++++.|.++||+++++++|||+|++|++++|.+|+|++|+||+||.||++|++++|++.++
T Consensus 81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~LDs~R~~~~l~~~~~ 160 (294)
T 2x0j_A 81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGA 160 (294)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSSCCTTSEEECCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhhHHHcCCChhhEEEeeeEEeHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASI 416 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~i 416 (488)
+++. +++||||||++++|+||++++.|.+ +++++.+++++++++|++.||+++|++|++++++
T Consensus 161 ~~~~--~~~V~G~HGdt~vp~~S~~~v~g~~---------------~~~~i~~~~~~~g~eIi~~kGst~~a~a~a~~~~ 223 (294)
T 2x0j_A 161 RNIR--RAWIIGEHGDSMFVAKSLADFDGEV---------------DWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM 223 (294)
T ss_dssp EEEC--CCCEEBCSSTTCEECGGGCCEESCC---------------CHHHHHHHHHTHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCcc--eeEEEecCCCcEEEeeeccCCCCch---------------hHHHHHHHHhhhheEEEecCcccchhHHHHHHHH
Confidence 7653 6899999999999999999987743 2456778899999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 417 i~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++|++|++.++|++++.+|+||+ +++|||+||++|++|+ ++++++|+++|+++|++|++.||+.++.+
T Consensus 224 ~~ail~d~~~v~~~s~~l~g~yG~-~~v~~s~P~~lg~~Gv-ei~~l~L~~~E~~~l~~s~~~lk~~i~~l 292 (294)
T 2x0j_A 224 VKAVVEDTGEIIPTSMILQGEYGI-ENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRERLEEL 292 (294)
T ss_dssp HHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEE-EECCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCcEEEEEEEEecCCCC-ccEEEEEEEEEeCCEE-EEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 4899999999999998 58889999999999999999999998865
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-64 Score=511.84 Aligned_cols=310 Identities=28% Similarity=0.478 Sum_probs=282.8
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIit 252 (488)
.|+++||+|||||.+|+++++.|+..++. +|+|+|++++++++.++|++|...+ ....++..++|+++++|||+||++
T Consensus 4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIia 82 (324)
T 3gvi_A 4 SMARNKIALIGSGMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVT 82 (324)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEEC
T ss_pred CCcCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEc
Confidence 46778999999999999999999999985 9999999999999999999997421 134678878899999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLA 332 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA 332 (488)
+|.|++||++|.|++.+|++++++++++|.++||++|+|++|||+|++|++++++++||++||||++|.||+.|++++||
T Consensus 83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~~~LD~~R~~~~la 162 (324)
T 3gvi_A 83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLS 162 (324)
T ss_dssp CSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHH
T ss_pred cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeecCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987999999999999
Q ss_pred HHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh--cCCcchhhH
Q psy12825 333 QKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL--KGYTSWALG 410 (488)
Q Consensus 333 ~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~--kg~t~~s~A 410 (488)
+++|++|++|+++||||||++++|+||+++++|+|+.++.+. ..+++++++++.+++++++++|++. +|+++|++|
T Consensus 163 ~~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v~~~g~eIi~~~gkgsa~~~~a 240 (324)
T 3gvi_A 163 EEFNVSVEDVTVFVLGGHGDSMVPLARYSTVAGIPLPDLVKM--GWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPA 240 (324)
T ss_dssp HHHTCCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHHHT--TSSCHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHH
T ss_pred HHhCcCHHHCeEEEEcCCCCceeeehhhCeECCEEHHHhhhc--cCCCHHHHHHHHHHHHHhHHHHHHhcCCCcHHHHHH
Confidence 999999999999999999999999999999999999887532 1245778899999999999999985 578899999
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 411 LSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 411 ~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++++++|++|++.++|++++++|+||++ |+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 241 ~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~v~~s~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~ 316 (324)
T 3gvi_A 241 ASAIQMAESYLKDKKRVLPVAAQLSGQYGVK-DMYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVAGLCEAC 316 (324)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEEEecCccCCC-ceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 899999999999999999999999999999999999999888764
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=506.00 Aligned_cols=300 Identities=32% Similarity=0.529 Sum_probs=285.1
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
||+|||||+||+++++.++.+++ +||+|+|++++++++.++|+.|...+ ....++..++|+++++|||+||++++.++
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHHhCCCCEEEEeCCCCC
Confidence 79999999999999999999998 89999999999999999999986421 23567888789999999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
+||++|.|++.+|++++++++++|+++||++|+|++|||+|++|+++++++++|++||||+||.||+.|+++++|+++|+
T Consensus 80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~~~~p~~rviG~gt~LD~~R~~~~la~~lgv 159 (308)
T 2d4a_B 80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGV 159 (308)
T ss_dssp CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCChhhEEEecccchHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcC-CcchhhHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG-YTSWALGLSVASI 416 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg-~t~~s~A~a~~~i 416 (488)
+|++|+++||||||++++|+||+++++|.|+.+++ +++.++++.+++++++++|++.|| +++|++|.+++++
T Consensus 160 ~~~~v~~~v~G~Hg~t~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~v~~~g~eii~~kg~s~~~~~a~a~~~~ 232 (308)
T 2d4a_B 160 SFKSVNAIVLGMHGQKMFPVPRLSSVGGVPLEHLM-------SKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLT 232 (308)
T ss_dssp CGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHS-------CHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred ChhHeEEEEEeccCCceeeeehhccCCCEEHHHHc-------CHHHHHHHHHHHHHhhHhhhhCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999998864 367789999999999999999999 9999999999999
Q ss_pred HHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 417 SHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 417 i~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++|++|++.++++|++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 233 ~~ai~~~~~~v~~vs~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 302 (308)
T 2d4a_B 233 VEAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVKKLVETL 302 (308)
T ss_dssp HHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCcEEEEEEEEcCccCC-CceEEEEEEEEcCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 7999999999999999999999999999999999999999988764
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-63 Score=505.70 Aligned_cols=309 Identities=35% Similarity=0.677 Sum_probs=288.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIita 253 (488)
++++||+|||||++|+++++.|+.+++.++|+|+|++++++++.++|+.|...+. ...++.. +++++++|||+||+++
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~~~~a~~~aDvVvi~a 82 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-GEYSDCHDADLVVICA 82 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-CCGGGGTTCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-CCHHHhCCCCEEEECC
Confidence 4568999999999999999999999988899999999999999999999974332 2345554 6789999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQ 333 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~ 333 (488)
+.|+++|++|.|++.+|++++++++++|.++||++|+|++|||+|++|+++++++++|++||||+||.||+.|+++++|+
T Consensus 83 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~gt~lD~~r~~~~la~ 162 (317)
T 3d0o_A 83 GAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSE 162 (317)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEecCccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHH
Q psy12825 334 KLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413 (488)
Q Consensus 334 ~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~ 413 (488)
++|++|++|+++||||||++++|+||+++++|+|+.++.+.. .++++.++++.+++++++++|++.||+++|++|.++
T Consensus 163 ~l~v~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~ 240 (317)
T 3d0o_A 163 AFDVAPRSVDAQIIGEHGDTELPVWSHANIAGQPLKTLLEQR--PEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL 240 (317)
T ss_dssp HHTSCGGGCBCCEEBCSSTTCEECTTTCEETTEEHHHHHHTS--TTHHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHH
T ss_pred HhCcChhhEEEEEEecCCCCeeEeeeccccCCEEHHHHhhcc--CCCHHHHHHHHHHHHhhhhEEEeCCCCchHhHHHHH
Confidence 999999999999999999999999999999999998876432 245667889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++|++|++.++++|++++|+||+| |+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 241 ~~~~~ai~~~~~~~~~~~~~~~g~~g~~-~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 313 (317)
T 3d0o_A 241 ARITEAIFRNEDAVLTVSALLEGEYEEE-DVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAEA 313 (317)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCcEEEEEEeecCccCCC-ceEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999988764
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-63 Score=506.61 Aligned_cols=310 Identities=38% Similarity=0.654 Sum_probs=273.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+++||+|||+|++|+++++.|+.+++.++|+|+|++++++++.++|+.|...+....++.. +++++++|||+||++++.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~~~~a~~~aDvVii~~g~ 84 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA-GDYSDVKDCDVIVVTAGA 84 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---CGGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE-CCHHHhCCCCEEEEcCCC
Confidence 4579999999999999999999999989999999999999999999999864333334443 578999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKL 335 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~L 335 (488)
|+++|++|.|++.+|+++++++++.|.++||++|+|++|||+|++|+++++++++|++||||+||.||+.|+++++|+++
T Consensus 85 p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld~~r~~~~la~~l 164 (318)
T 1y6j_A 85 NRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKL 164 (318)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHHHHHHHHHHTTT
T ss_pred CCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHH
Q psy12825 336 GLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVAS 415 (488)
Q Consensus 336 gv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ 415 (488)
|++|++|+++||||||++++|+||+++++|.|+.++.++....++++.++++.++++++++++++.||+++|++|.++++
T Consensus 165 gv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~ 244 (318)
T 1y6j_A 165 GVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINT 244 (318)
T ss_dssp TCCTTTEECCEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCCHHHeEEEEecccCCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999988765321123455678899999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 416 ISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 416 ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++|++|++.++++|++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 245 ~~~ai~~~~~~~~~~~~~~~G~yg~-~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 315 (318)
T 1y6j_A 245 IVETLLKNQNTIRTVGTVINGMYGI-EDVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEV 315 (318)
T ss_dssp HHHHHHHTCCCEECCEEEECSBTTB-CSEEEECCEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcEEEEEEeecCccCC-cceEEEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7999999999999999999999999999999999999999988765
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-62 Score=496.60 Aligned_cols=311 Identities=35% Similarity=0.692 Sum_probs=289.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIita 253 (488)
.+++||+|||+|.||+++++.++.+++.++|+|+|++++++++.++|+.|...+.. ..++. ++++++++|||+||+++
T Consensus 4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~~~al~~aDvViia~ 82 (316)
T 1ldn_A 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW-HGDYDDCRDADLVVICA 82 (316)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE-ECCGGGTTTCSEEEECC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEE-cCcHHHhCCCCEEEEcC
Confidence 35679999999999999999999999888999999999999999999999753222 34555 45789999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQ 333 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~ 333 (488)
+.++++|++|.|++.+|++++++++++++++||++|++++|||+|++|+++++++++|++||||+||.||+.|+++++|+
T Consensus 83 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~~~~s~~p~~rviG~gt~lD~~r~~~~la~ 162 (316)
T 1ldn_A 83 GANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGE 162 (316)
T ss_dssp SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEECTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHHHhCCCHHHEEecccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHH
Q psy12825 334 KLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413 (488)
Q Consensus 334 ~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~ 413 (488)
++|++|++|+++||||||++++|+||+++++|.|+.++.+... .+.++.++++.+++++++++|++.||+++|++|.++
T Consensus 163 ~l~v~~~~v~~~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~ 241 (316)
T 1ldn_A 163 YFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKG-EEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGL 241 (316)
T ss_dssp HHTSCGGGEEEEEEBCSSTTCEEEEEEEEETTEESTTTSGGGT-TTHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HhCCCHHHeEEEEecccCCceeeeehhccCCCEEHHHHhhccc-cCCHHHHHHHHHHHHHhHHHHHhccCCcHHHHHHHH
Confidence 9999999999999999999999999999999999988765321 245667889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGLL 488 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~~ 488 (488)
++++++|++|++.++++|++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|+++|++.++.+|
T Consensus 242 ~~~~~ai~~~~~~~~~~~~~~~g~yg~-~~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~ 315 (316)
T 1ldn_A 242 ARVTRAILHNENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAF 315 (316)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCcEEEEEEEecCccCC-cceEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 89999999999999999999999999999999999999999988764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-62 Score=493.26 Aligned_cols=301 Identities=26% Similarity=0.495 Sum_probs=276.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+||+|||||.||+++++.|+..++. +|+|+|++++++++.++|+.|.... ....++..++|+++++|||+||+++|.|
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-eEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHCCCCEEEEcCCCC
Confidence 6999999999999999999999875 4999999999999999999986321 1356788888999999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++++++++|++||||+||.||+.|+++++|+++|
T Consensus 82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~~~~~~~~~~rviG~gt~LD~~r~~~~la~~lg 161 (309)
T 1ur5_A 82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAG 161 (309)
T ss_dssp -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHHHHHcCCCHHHEEECCcchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH--hcCCcchhhHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK--LKGYTSWALGLSVA 414 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~--~kg~t~~s~A~a~~ 414 (488)
++|++|+++||||||++++|+||+++++|.|+.+++ +++.++++.+++++++++|++ .||+++|++|.+++
T Consensus 162 v~~~~v~~~v~G~Hg~t~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~v~~~g~eii~~~~kgs~~~~~a~a~~ 234 (309)
T 1ur5_A 162 VSVEDVQAMLMGGHGDEMVPLPRFSCISGIPVSEFI-------APDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATA 234 (309)
T ss_dssp CCGGGEEECCEECSGGGEECCGGGEEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHHHH
T ss_pred CChhheeEEEecCcCCceeeeeecceeCCEeHHHHc-------CHhHHHHHHHHHHhhhHHhhhhccCCCcHHHHHHHHH
Confidence 999999999999999999999999999999998754 367789999999999999999 79999999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++|++|++.++++|++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 235 ~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 306 (309)
T 1ur5_A 235 QMVEAVLKDKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL 306 (309)
T ss_dssp HHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEEEEecCccCC-cceEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999988765
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-63 Score=505.37 Aligned_cols=303 Identities=51% Similarity=0.858 Sum_probs=280.2
Q ss_pred HHHHhhhCCCCCC-CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc
Q psy12825 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA 241 (488)
Q Consensus 163 ~~~~~e~~~~~~~-~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e 241 (488)
++++.+....... +.+||+|||+|.||+++++.++.+++.++|+|+|++++++++.++||+|...+....++..++||+
T Consensus 6 ~~~~~~~~~~~~~~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~ 85 (330)
T 3ldh_A 6 DKLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS 85 (330)
T ss_dssp HHHSCCCSCCCCCCCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC
T ss_pred HHHHhhcccccccCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH
Confidence 3444444332333 568999999999999999999999999999999999999999999999986555667888889999
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCC
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTN 321 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~ 321 (488)
+++|||+||+++|.|++||++|.|++.+|++++++++++|.++||++|++++|||+|++|++++++++||++||||+||.
T Consensus 86 ~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~~k~sg~p~~rViG~gt~ 165 (330)
T 3ldh_A 86 VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCN 165 (330)
T ss_dssp SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEECCTTH
T ss_pred HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHHHHHhCCCHHHeecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 322 LDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 322 lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
||+.|+++++|+++|++|++|+++||||||++++|+||+. +. +++.+++++++++|++.
T Consensus 166 LDs~R~~~~lA~~lgv~~~~V~~~V~G~Hg~t~vp~~S~~---------~~------------~~~~~~v~~~g~eii~~ 224 (330)
T 3ldh_A 166 LDSARFRYLMGERLGVHSCLVIGWVIGQHGDSVPSVWSGM---------WD------------AKLHKDVVDSAYEVIKL 224 (330)
T ss_dssp HHHHHHHHHHHHHHTSCTTTCCEEECSSSSTTCCEEEEEE---------EE------------TTEEHHHHHCCCTTSTT
T ss_pred hhHHHHHHHHHHHhCCCHHHeEEEEEcCCCCceeeechhh---------HH------------HHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999991 10 23566788999999999
Q ss_pred cCCcchhhHH-----------------HHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEE--Eec
Q psy12825 402 KGYTSWALGL-----------------SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTH--IIN 462 (488)
Q Consensus 402 kg~t~~s~A~-----------------a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~--i~~ 462 (488)
||+++|++|+ ++++++++|+++++.++|++++++|+||+++|+|||+||++| +|+++ +++
T Consensus 225 kg~t~~a~a~~~~~~~~~~~~~~~~~~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~ 303 (330)
T 3ldh_A 225 KGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVK 303 (330)
T ss_dssp CHHHHHHHHHTTHHHHTTSSSCSCTHHHHHHHHHHHHHTCCEEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCC
T ss_pred cCCcceeeeeeccCccchhhhhhhHHHHHHHHHHHHHcCCCceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceec
Confidence 9999999999 999999999999999999999999999999899999999999 99999 999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 463 QNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 463 l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|+++|+++|++|++.|++.++++
T Consensus 304 ~~L~~~E~~~l~~s~~~l~~~~~~~ 328 (330)
T 3ldh_A 304 MKLKPDEEQQLQKSATTLWDIQKDL 328 (330)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999875
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-61 Score=495.10 Aligned_cols=304 Identities=20% Similarity=0.239 Sum_probs=269.0
Q ss_pred CCCCCceEEEEe-cccchHHHHHHHHHcCCCCe---EEEEeC----ChhHHHHHHHHHhhcCCCCCCCcEEEc-CCcccc
Q psy12825 173 IESPDQKITVVG-AGQVGMACTYSILTQGIYSN---FCLIDS----NEDRCKGEMLDLQHGAPFLRSPKIESG-SDIAMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIG-AG~vG~~ia~~La~~~l~~e---l~L~Di----~~e~l~g~~~dL~~~~~~~~~~~v~~t-td~eal 243 (488)
+..++.||+||| +|.+|+++++.|+.++++++ |+|+|+ ++++++|.++||+|+.. +....+..+ .+|+++
T Consensus 28 ~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~-p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 28 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVF 106 (375)
T ss_dssp -CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHT
T ss_pred hCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhh-hhcCCcEEecCCHHHh
Confidence 344678999999 59999999999999998877 777655 45669999999999863 222344444 458999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCCh
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNL 322 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~l 322 (488)
+|||+||+++|.|++||++|.|++..|++|++++++.|.++ +|++++|++|||+|++|++++|+++++++|+||.||.|
T Consensus 107 ~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~rvig~gT~L 186 (375)
T 7mdh_A 107 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRL 186 (375)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHH
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCccEEEeeehH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999887778899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHH--HHHHHHHhhhHHHHH
Q psy12825 323 DSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENF--VRLHADVVNSAYEVI 399 (488)
Q Consensus 323 ds~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~--~el~~~v~~~~~eIi 399 (488)
|++|++++||+++|++|.+|+. +||||||+++||+||+++++|+|+.++.+ ++.| +++.+++++++++|+
T Consensus 187 DsaR~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V~G~pl~~~~~-------~~~~~~~~i~~~v~~~g~eII 259 (375)
T 7mdh_A 187 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIK-------RTKWLEEEFTITVQKRGGALI 259 (375)
T ss_dssp HHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCC-------CHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccCCCEEhhHhcc-------chhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999996 89999999999999999999999988753 3345 679999999999999
Q ss_pred HhcCCcchhhHHHHHHHHHHHH-----cCCCcEEEEEeeecC-cCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHH
Q psy12825 400 KLKGYTSWALGLSVASISHTLL-----NNTNKIHAVSTLIQG-HHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEK 472 (488)
Q Consensus 400 ~~kg~t~~s~A~a~~~ii~aIl-----~~~~~v~~vsv~~~G-~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~ 472 (488)
+.||.++|+ +++++++++|+ +|+++++|+|++++| +||+|+|+|||+||++|++|++++++ ++|+++|+++
T Consensus 260 ~~kG~ts~a--~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~ 337 (375)
T 7mdh_A 260 QKWGRSSAA--STAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWER 337 (375)
T ss_dssp HHTSSCCHH--HHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHH
T ss_pred HhcCCCchH--HHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHH
Confidence 999999884 45555555554 478999999999999 69999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy12825 473 LRKSAATISQIQKG 486 (488)
Q Consensus 473 L~~sa~~i~~~~~~ 486 (488)
|++|+++|++..+.
T Consensus 338 l~~Sa~~L~~e~~~ 351 (375)
T 7mdh_A 338 IKKSEAELLAEKKC 351 (375)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977643
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-60 Score=479.37 Aligned_cols=299 Identities=32% Similarity=0.530 Sum_probs=281.6
Q ss_pred ceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeC--ChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQGIYSNFCLIDS--NEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di--~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
+||+|+| +|.+|+++++.|+.+++..+|+|+|+ +++++++.++|+.|...+....++.. +++++++|||+||++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-GGYEDTAGSDVVVITAG 79 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-CCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-CCHHHhCCCCEEEEcCC
Confidence 5999999 69999999999999888889999999 99999998999999754334456655 47899999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
.++++|++|.|++.+|+++++++++.+++++|++|++++|||+|++|+++++++++|++||||+||.||+.|+++++|++
T Consensus 80 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~gt~Ld~~r~~~~la~~ 159 (303)
T 1o6z_A 80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE 159 (303)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeecccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVA 414 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~ 414 (488)
+|++|++|+++||||||++++|+||+++++|.| ++. +++.|+++.+++++++++|++.||+++|++|.+++
T Consensus 160 l~v~~~~v~~~v~G~HG~~~~p~~s~~~v~g~p--~~~-------~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~ 230 (303)
T 1o6z_A 160 FDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTD--PEF-------SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVA 230 (303)
T ss_dssp HTCCGGGEECCEEECSSTTEEECGGGCEETTBC--CCC-------CHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred hCcCHHHeEEEEEeCCCCccccCCcccccCCcC--ccC-------CHHHHHHHHHHHHHHhHHHHhcCCChHHHHHHHHH
Confidence 999999999999999999999999999999988 543 47778999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++|++|++.+++++++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 231 ~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 302 (303)
T 1o6z_A 231 HMVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQYDKI 302 (303)
T ss_dssp HHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEEecCCccCC-cceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999998765
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-61 Score=491.58 Aligned_cols=307 Identities=23% Similarity=0.346 Sum_probs=274.5
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
+=++.+||+|||| |.||+++++.++..++..+|+|+|++++++++.++||+|.. ++ ..++..++|+ ++++|||+||
T Consensus 4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~-~~-~~~i~~t~d~~~al~dADvVv 81 (343)
T 3fi9_A 4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG-FE-GLNLTFTSDIKEALTDAKYIV 81 (343)
T ss_dssp CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC-CT-TCCCEEESCHHHHHTTEEEEE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc-CC-CCceEEcCCHHHHhCCCCEEE
Confidence 3456789999998 99999999999999988899999999999999999999985 43 3467777786 7899999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcE-EEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHH
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCI-LLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRV 329 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~-vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~ 329 (488)
+++|.|++||++|.|++.+|+++++++++.|.++||++| ++++|||+|++|++++|++|||++||+|+ |.||++|+++
T Consensus 82 itaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~~k~sg~p~~rv~g~-t~LDs~R~~~ 160 (343)
T 3fi9_A 82 SSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTTL-AGLDSTRLQS 160 (343)
T ss_dssp ECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHHHHHHTCCGGGEEEE-CCHHHHHHHH
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHHHHHcCCCcceEEEe-cCcHHHHHHH
Confidence 999999999999999999999999999999999999997 89999999999999999999999999986 9999999999
Q ss_pred HHHHHhCCCCCCce-eEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcc-h
Q psy12825 330 LLAQKLGLSPESVH-GFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTS-W 407 (488)
Q Consensus 330 ~lA~~Lgv~p~~V~-~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~-~ 407 (488)
+||+++|++|++|+ ++||||||++++|+||+++++|+|+.++.... .+++++|+++.+++++++++|++.||.++ |
T Consensus 161 ~la~~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v~G~pl~~~~~~~--~~~~~~~~~i~~~v~~~g~eIi~~kg~ss~~ 238 (343)
T 3fi9_A 161 ELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTD--KLTNEQWAELKQRVVKGGANIIKLRGRSSFQ 238 (343)
T ss_dssp HHHHHHTSCGGGEECCCEEESSGGGEEECGGGCEETTEEGGGTTTBT--TBCHHHHHHHHHHHHTHHHHHHHHHSSCCCH
T ss_pred HHHHHhCcCHHHcccceEEEcCCCceeeeeecceECCEEhhHhcccc--CCCHHHHHHHHHHHHhhhHHHHHccCCCcHH
Confidence 99999999999997 89999999999999999999999999876431 24678899999999999999999999775 5
Q ss_pred hhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccC--CCHHHHHHHHHHHHHHHHHHH
Q psy12825 408 ALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQN--LTPDEAEKLRKSAATISQIQK 485 (488)
Q Consensus 408 s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~--L~~~E~~~L~~sa~~i~~~~~ 485 (488)
++|+++++++++|++|++.++|+|++.+|+| .+|+|||+||++|++|++.+ .++ |+++|+++|++|++.|++.++
T Consensus 239 s~A~a~~~~~~ail~d~~~v~~~s~~~~g~~--~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l~~~~~ 315 (343)
T 3fi9_A 239 SPSYVSIEMIRAAMGGEAFRWPAGCYVNVPG--FEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHLAKLRD 315 (343)
T ss_dssp HHHHHHHHHHHHHTTSSCCCSCEEEEEEETT--EEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCceEEEEEEEeCCC--cCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999864 47899999999999999876 544 899999999999999998887
Q ss_pred hh
Q psy12825 486 GL 487 (488)
Q Consensus 486 ~~ 487 (488)
.+
T Consensus 316 ~~ 317 (343)
T 3fi9_A 316 EV 317 (343)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-60 Score=482.74 Aligned_cols=307 Identities=27% Similarity=0.464 Sum_probs=286.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
+++||+|||||+||+++++.|+..++.+ |+|+|++++++++...|+.+... .....++..++|+++++|||+||++++
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 81 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeCC
Confidence 4579999999999999999999999854 99999999999999999998632 123567888889999999999999999
Q ss_pred cccCCCcc-----hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHH
Q psy12825 255 VRSLVGET-----RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRV 329 (488)
Q Consensus 255 ~~~k~G~~-----r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~ 329 (488)
.|+++|++ |.|++.+|++++++++++|+++||++|+|++|||++++|+++++.++||++||+|+||.||++|+++
T Consensus 82 ~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~~~~~g~~~~rviG~gt~ld~~R~~~ 161 (322)
T 1t2d_A 82 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY 161 (322)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHH
T ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHHHHhcCCChHHEEeccCcccHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhh
Q psy12825 330 LLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWAL 409 (488)
Q Consensus 330 ~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~ 409 (488)
++|+++|++|++|+++||||||++++|+||+++++|.|+.++.+.. +++++.++++.+++++++++|++.||+++|++
T Consensus 162 ~la~~lgv~~~~v~~~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~eii~~kgs~~~~~ 239 (322)
T 1t2d_A 162 YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNK--LISDAELEAIFDRTVNTALEIVNLHASPYVAP 239 (322)
T ss_dssp HHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHTHHHHHHHHTSSCCHHH
T ss_pred HHHHHhCCCHHHeEEEEEcCCCCcEEeeHHHceECcEeHHHhcccc--CCCHHHHHHHHHHHHHHHHHHHhccCchHHHH
Confidence 9999999999999999999999999999999999999998876532 24577788999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Q psy12825 410 GLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKG 486 (488)
Q Consensus 410 A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~ 486 (488)
|.++++++++|++|++.++++|++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|++.|++.++-
T Consensus 240 a~a~~~~~~ai~~~~~~v~~~s~~~~g~~g~-~~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~L~~~~~~ 315 (322)
T 1t2d_A 240 AAAIIEMAESYLKDLKKVLICSTLLEGQYGH-SDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKAL 315 (322)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 799999999999999999999999999999999999999988763
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=479.08 Aligned_cols=308 Identities=27% Similarity=0.465 Sum_probs=285.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.++||+|||||++|+++++.|+..++. +|+|+|++++++++.++++.+... .....++..++|+++++|||+||++++
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~VI~avg 91 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIITAG 91 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHCCCCEEEEcCC
Confidence 346999999999999999999999885 499999999999998889888642 113467888889999999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
.|+++|++|.|++.+|++++++++++|+++||++|+|++|||++++|+++++.++|||+||+|+||.||++|+++++|++
T Consensus 92 ~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~~t~Ld~~R~~~~la~~ 171 (328)
T 2hjr_A 92 VPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRA 171 (328)
T ss_dssp CCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEeCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH--hcCCcchhhHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK--LKGYTSWALGLS 412 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~--~kg~t~~s~A~a 412 (488)
+|++|++|+++||||||++++|+||+++++|+|+.++++. ..+++++++++.++++++++++++ .+|+++|++|.+
T Consensus 172 lgv~~~~v~~~v~G~Hg~t~~p~~s~~~v~G~~~~~~~~~--~~~~~~~~~~~~~~v~~~g~eii~~~~~gs~~~~~a~a 249 (328)
T 2hjr_A 172 LGVKPSDVSAIVVGGHGDEMIPLTSSVTIGGILLSDFVEQ--GKITHSQINEIIKKTAFGGGEIVELLKTGSAFYAPAAS 249 (328)
T ss_dssp HTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHT--TSSCHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHH
T ss_pred hCCCHHHeeEEEecCCCCceeeeeeeceECCEEHHHHhhc--cCCCHHHHHHHHHHHHhhHHHHHhhhCCCchHHHHHHH
Confidence 9999999999999999999999999999999999887543 124577788999999999999999 689999999999
Q ss_pred HHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 413 VASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 413 ~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++++|++|++.++++|++++|+||+ +|+|||+||++|++|+++++.++|+++|+++|++|++.|++.++.+
T Consensus 250 ~~~i~~ai~~~~~~v~~~~v~~~G~~g~-~~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 323 (328)
T 2hjr_A 250 AVAMAQAYLKDSKSVLVCSTYLTGQYNV-NNLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQNLVQDL 323 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEEeecCccCC-CceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 7999999999999999999999999999999999999999888754
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-59 Score=473.69 Aligned_cols=290 Identities=39% Similarity=0.681 Sum_probs=259.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
..+++||+|||||.||+++++.++.+++.++|+|+|++++ +.+.++|+.+.. ..++..++||++++|||+||+++
T Consensus 11 ~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~----~~~i~~t~d~~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 11 NKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFN----LPNVEISKDLSASAHSKVVIFTV 85 (303)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHT----CTTEEEESCGGGGTTCSEEEECC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhc----CCCeEEeCCHHHHCCCCEEEEcC
Confidence 3456899999999999999999999999999999999988 788899999853 23777788999999999999999
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHH
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQ 333 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~ 333 (488)
|.+ +||++|.|++.+|++++++++++|+++||++|+|++|||+|++|++++++++||++||||+||.||+.|+++++|+
T Consensus 86 g~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~~R~~~~la~ 164 (303)
T 2i6t_A 86 NSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITN 164 (303)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHH
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCCCCCchHHHHHHHHHH
Confidence 996 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHH
Q psy12825 334 KLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413 (488)
Q Consensus 334 ~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~ 413 (488)
++|++|++|+++|||+||++++|+||+.. ++ +. +++.+++++++++|++.||+++|++|.++
T Consensus 165 ~lgv~~~~v~~~v~G~Hg~s~~p~~s~~~-------~~-------~~----~~~~~~~~~~g~eii~~kGst~~~~a~a~ 226 (303)
T 2i6t_A 165 VLKAQTSGKEVWVIGEQGEDKVLTWSGQE-------EV-------VS----HTSQVQLSNRAMELLRVKGQRSWSVGLSV 226 (303)
T ss_dssp TSCCTTGGGGEEEEBSCSSSCEEEEBCSS-------CC-------CC----HHHHHHHHHHHHTTSSSCCCCHHHHHHHH
T ss_pred HcCCChHHeEEEEecCCCCCccccccccc-------cc-------cH----HHHHHHHHHHHHHHHHccCchHHhHHHHH
Confidence 99999999999999999999999999951 11 11 34677788899999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++|++|++.+++++++++|+||+|+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.+
T Consensus 227 ~~i~~ai~~~~~~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~ 301 (303)
T 2i6t_A 227 ADMVDSIVNNKKKVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL 301 (303)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCcEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999887 899999999999999999998765
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-59 Score=473.70 Aligned_cols=303 Identities=30% Similarity=0.506 Sum_probs=276.4
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC--ChhHHHHHHHHHhhcCCCC-CCCcEEEcCC--ccccCCCcEEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS--NEDRCKGEMLDLQHGAPFL-RSPKIESGSD--IAMSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di--~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd--~eal~dADiVIi 251 (488)
+||+|+|| |.+|+++++.|+.+++..+++|+|+ +++++++.++|+.|...+. ...++..++| +++++|||+||+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 59999999 9999999999999888889999999 8888999999999875332 2446665555 789999999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHH
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLL 331 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~l 331 (488)
+++.++++|++|.+++.+|+++++++++.++++| ++|++++|||+|++|+++++++++|++||||+||.||+.|+++++
T Consensus 81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~~k~~~~p~~rviG~gt~LD~~r~~~~l 159 (313)
T 1hye_A 81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAI 159 (313)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHHHHHHCCCTTSEEECTTHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHHHHhhCcChhcEEEeCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHH
Q psy12825 332 AQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGL 411 (488)
Q Consensus 332 A~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~ 411 (488)
|+++|++|++|+++||||||++++|+||+++++|.|+.++.. ++++.++++.+++++++++|++.||+++|++|.
T Consensus 160 a~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~-----~~~~~~~~~~~~v~~~g~eii~~kgs~~~~~a~ 234 (313)
T 1hye_A 160 AKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFER-----FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAA 234 (313)
T ss_dssp HHHHTCCGGGEECCEEECSSTTEEECGGGCEETTEEGGGCGG-----GGGCCHHHHHHHHHHHTTSCCC------CCHHH
T ss_pred HHHhCcCHHHeEEEEeeccCCcccceeeccccCCEEHHHHhc-----CCHHHHHHHHHHHHhccceeecCCCCcHHHHHH
Confidence 999999999999999999999999999999999999988640 235557899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 412 SVASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 412 a~~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++++|++|++.+++++++++|+| |+ +|+|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 235 a~~~~~~ai~~~~~~~~~~~~~~~g~~~g~-~~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 310 (313)
T 1hye_A 235 AILNVVRCIVNNEKRLLTLSAYVDGEFDGI-RDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEV 310 (313)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEEESSSSSC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEEeecceecCc-cceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99 7999999999999999999999999999999999999999988765
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-59 Score=475.65 Aligned_cols=307 Identities=25% Similarity=0.454 Sum_probs=284.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCcc-ccCCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIA-MSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~e-al~dADiVIitag 254 (488)
++||+|||||++|+++++.|+..++. +|+|+|++++++++.+.++.+... .....++..++|++ +++|||+||+++|
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g 87 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 87 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence 47999999999999999999999874 499999999999998899888642 12356788889996 8999999999999
Q ss_pred cccCCCc-----chHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHH
Q psy12825 255 VRSLVGE-----TRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRV 329 (488)
Q Consensus 255 ~~~k~G~-----~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~ 329 (488)
.|+++|+ +|.|++.+|++++++++++|+++||++|+|++|||++++|+++++.++||++||+|+||.||+.|+++
T Consensus 88 ~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~gt~LD~~R~~~ 167 (331)
T 1pzg_A 88 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRR 167 (331)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHH
T ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHHHHhcCCChhcEEeccchHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH--hcCCcch
Q psy12825 330 LLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK--LKGYTSW 407 (488)
Q Consensus 330 ~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~--~kg~t~~ 407 (488)
+||+++|++|++|+++|||+||++++|+||+++++|+|+.++... ..++++.++++.+++++++++|++ .||+++|
T Consensus 168 ~la~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~eii~~~~kgst~~ 245 (331)
T 1pzg_A 168 YVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKD--GVVTEKQLEEIAEHTKVSGGEIVRFLGQGSAYY 245 (331)
T ss_dssp HHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHHHHhCCCHHHceEEEecCCCCCEeeeeecceECCEEHHHHhhc--ccCCHHHHHHHHHHHHhccHHHHHhhcCCCccc
Confidence 999999999999999999999999999999999999999886532 124567788899899999999999 7999999
Q ss_pred hhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 408 ALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 408 s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|.++++++++|++|++.++++|++++|+||+ +|+|||+||++|++|+++++.++|+++|+++|++|++.|++.++.+
T Consensus 246 ~~a~a~~~ii~ai~~~~~~~~~~~v~~~G~~g~-~~~~~~vP~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 324 (331)
T 1pzg_A 246 APAASAVAMATSFLNDEKRVIPCSVYCNGEYGL-KDMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALNKAV 324 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEEEecCccCC-CceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 7999999999999999999999999999999999999999888754
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-59 Score=469.27 Aligned_cols=302 Identities=35% Similarity=0.602 Sum_probs=254.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+||+|||||.+|+++++.|+..++.++|+|+|++++++++.++|+.|...+....++.. +++++++|||+||++++.|+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-GGHSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-ECGGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-CCHHHhCCCCEEEEcCCCCC
Confidence 59999999999999999999999888999999999999999999988754333455654 57899999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.|++.+|++++++++++|+++||++|+|++|||++++++++++.+ |++||||+||.||+.|+++++|+++|+
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~--~~~rviG~gt~Ld~~r~~~~la~~l~v 157 (304)
T 2v6b_A 80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGV 157 (304)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHS--CSSCEEECTTHHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhC--ChhcEEeCCcCchHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
+|++|+++||||||++++|+||+++++|+|+.++.+.....++++.++++.+++++++++|++.||+++|++|.++++++
T Consensus 158 ~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg~t~~~~a~a~~~~~ 237 (304)
T 2v6b_A 158 DGTHAHGYVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARIT 237 (304)
T ss_dssp CGGGEECCEEESSSTTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC-----------CCHHHHHHHHHHH
T ss_pred CHHHceEEEecCCCCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999998875432222457778999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|++|++.+++++++++| || +|||+||++|++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 238 ~ai~~~~~~~~~~~~~~~g-yg----~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 302 (304)
T 2v6b_A 238 EAVLRDRRAVLTVSAPTPE-YG----VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRGFKQQL 302 (304)
T ss_dssp HHHHTTCCEEEEEEEEETT-TT----EEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHhCCCcEEEEEEEECC-cC----cEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 97 89999999999999999999999999999999999999887654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-58 Score=467.27 Aligned_cols=302 Identities=32% Similarity=0.534 Sum_probs=282.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||+|||+|.+|++++..|+.+++..+|+|+|++++++++..+|+.+... +....++..++|++++++||+||++++.|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~~aDvViiav~~p 80 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHCCCCEEEEeCCCC
Confidence 59999999999999999999887667999999999999988888877521 11245677888998899999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 336 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lg 336 (488)
+++|++|.|++.+|+++++++++.|++++|+++++++|||++++++++++.+++|++||||+||.||+.|+++++|+++|
T Consensus 81 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~~~~~~~~~~rviG~gt~ld~~r~~~~la~~l~ 160 (310)
T 1guz_A 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELG 160 (310)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHHHCSCGGGEEEECHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHHHHhcCCChHHEEECCCchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH--hcCCcchhhHHHHH
Q psy12825 337 LSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK--LKGYTSWALGLSVA 414 (488)
Q Consensus 337 v~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~--~kg~t~~s~A~a~~ 414 (488)
++|++|+++||||||++++|+||+++++|+|+.+++ +++.++++.+++++++++|++ .||+++|++|.+++
T Consensus 161 v~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~~~~kgs~~~~~a~a~~ 233 (310)
T 1guz_A 161 VSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLL-------PAETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVV 233 (310)
T ss_dssp CCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHS-------CHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred CCHHHeEEEEEcccCCcEeeeeecccCCCEEHHHHC-------CHHHHHHHHHHHHHhHHHHHhhcCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999998864 367789999999999999999 79999999999999
Q ss_pred HHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++|++|++.++++|++++|+||+ +|+|||+||++|++|++++++++|+++|+++|++|+++|++.++.+
T Consensus 234 ~~~~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 305 (310)
T 1guz_A 234 EMVESIVLDRKRVLPCAVGLEGQYGI-DKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDENCKML 305 (310)
T ss_dssp HHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcEEEEEEeecCccCC-cceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999988764
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-58 Score=469.39 Aligned_cols=306 Identities=22% Similarity=0.292 Sum_probs=260.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-cccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal 243 (488)
..+++.||+|+|| |.+|+++++.|+++.+++ +|+|||+++ +.++|.++||+|+. ++....+..++| ++++
T Consensus 20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~-~~~~~~~~~~~~~~~a~ 98 (345)
T 4h7p_A 20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA-FPLLDKVVVTADPRVAF 98 (345)
T ss_dssp --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT-CTTEEEEEEESCHHHHT
T ss_pred CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC-ccCCCcEEEcCChHHHh
Confidence 6777889999997 999999999999987754 899999976 46789999999985 444556666666 5789
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHH-hcCCCCCcEEeecCC
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWK-LSGFPKNRVIGSGTN 321 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k-~sg~p~~rViG~gt~ 321 (488)
+|||+||+++|.||+|||+|.|++..|++|++++++.|.++| |+++++++|||+|++++++++ .+|++++|+||.+|.
T Consensus 99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~ 178 (345)
T 4h7p_A 99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTR 178 (345)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccc
Confidence 999999999999999999999999999999999999999996 789999999999999998877 458888888888899
Q ss_pred hHHHHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH
Q psy12825 322 LDSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK 400 (488)
Q Consensus 322 lds~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~ 400 (488)
||++|++++||+++|++|++|+. +||||||+++||+||+++++|.|+.++++. +...+++.+++++++++|++
T Consensus 179 LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v~g~~~~~~~~~------~~~~~~~~~~v~~~g~eIi~ 252 (345)
T 4h7p_A 179 LDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKD------DALDDDFVQVVRGRGAEIIQ 252 (345)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEETTEEGGGGCCC------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceECCccHHHhcch------hhHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999999985 689999999999999999999999887642 11124688899999999999
Q ss_pred hcCC-cchhhHHHHHHHHHHHHcCCCcEE--EEEeee-cCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHH
Q psy12825 401 LKGY-TSWALGLSVASISHTLLNNTNKIH--AVSTLI-QGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRK 475 (488)
Q Consensus 401 ~kg~-t~~s~A~a~~~ii~aIl~~~~~v~--~vsv~~-~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~ 475 (488)
.||. +.|++|+++++++++|+++.++.. ++.+++ +|+||+|+|+|||+||+++ +|.+++++ ++|+++|+++|++
T Consensus 253 ~kg~ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~ 331 (345)
T 4h7p_A 253 LRGLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLAS 331 (345)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC-----CGGGHH
T ss_pred cCCCcchhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHH
Confidence 9874 679999999999999999875544 445555 5899999999999999997 78888887 7999999999999
Q ss_pred HHHHHHHHHHh
Q psy12825 476 SAATISQIQKG 486 (488)
Q Consensus 476 sa~~i~~~~~~ 486 (488)
|+++|++....
T Consensus 332 s~~~L~~E~~~ 342 (345)
T 4h7p_A 332 TIAELQEERAQ 342 (345)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=461.37 Aligned_cols=287 Identities=29% Similarity=0.429 Sum_probs=262.2
Q ss_pred ceEEEEe-cccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE---cCCccccCCCcEEEEe
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES---GSDIAMSEGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~---ttd~eal~dADiVIit 252 (488)
|||+||| +|.||+++++.|+.+ ++.++|+|+|+++ +++|.++||+|.. ...++.. +.+|++++|||+||++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~---~~~~v~~~~~~~~~~~~~~aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIP---TAVKIKGFSGEDATPALEGADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSC---SSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCC---CCceEEEecCCCcHHHhCCCCEEEEe
Confidence 6999999 599999999999987 7888999999988 6889999999963 2345553 2468999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHH---HHHhcCC-CCCcEEeecCChHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI---SWKLSGF-PKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~---~~k~sg~-p~~rViG~gt~lds~R~~ 328 (488)
+|.|++||++|.|++.+|+++++++++.|.++||+++++++|||+|++|++ ++|.+|+ |++||+|++ .||+.|++
T Consensus 77 ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~-~LD~~R~~ 155 (312)
T 3hhp_A 77 AGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-TLDIIRSN 155 (312)
T ss_dssp CSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECC-HHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEe-chhHHHHH
Confidence 999999999999999999999999999999999999999999999999999 7888997 999999995 99999999
Q ss_pred HHHHHHhCCCCCCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc---CC
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK---GY 404 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k---g~ 404 (488)
++||+++|++|++|+++||||| |++++|+||++ .|.| +++++|+++.+++++++++|++.| |+
T Consensus 156 ~~la~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~--~g~~-----------~~~~~~~~i~~~v~~~g~eIi~~k~g~gs 222 (312)
T 3hhp_A 156 TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVS-----------FTEQEVADLTKRIQNAGTEVVEAKAGGGS 222 (312)
T ss_dssp HHHHHHHTCCGGGCCCCEEECSSGGGEEECGGGC--TTCC-----------CCHHHHHHHHHHHHTHHHHHHHHTTTSCC
T ss_pred HHHHHHhCcChhHcceeEEeccCCCceeeecccC--CCCC-----------CCHHHHHHHHHHHHhhhHHHHhhccCCCC
Confidence 9999999999999999999999 88999999998 5544 246789999999999999999988 89
Q ss_pred cchhhHHHHHHHHHHH---HcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHH
Q psy12825 405 TSWALGLSVASISHTL---LNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s~A~a~~~ii~aI---l~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i 480 (488)
++|++|+++++++++| ++|++.+++++ +++|+ | +.++|||+||++|++|+++++++ +|+++|+++|++|+++|
T Consensus 223 t~~s~a~a~~~~~~ai~~~l~~~~~v~~~s-~~~g~-g-~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l 299 (312)
T 3hhp_A 223 ATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-G-QYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299 (312)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCSSCEEEE-EEECC-C-SSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCceEEEE-EecCC-C-CcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999 78888999998 88876 4 35789999999999999999997 99999999999999999
Q ss_pred HHHHH
Q psy12825 481 SQIQK 485 (488)
Q Consensus 481 ~~~~~ 485 (488)
++.++
T Consensus 300 ~~~i~ 304 (312)
T 3hhp_A 300 KKDIA 304 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97664
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=466.51 Aligned_cols=303 Identities=18% Similarity=0.267 Sum_probs=268.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCe-----EEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSN-----FCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~e-----l~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dA 246 (488)
+++||+|+|| |.+|+++++.|+.++++++ |+|+|+++ ++++|.++||+|+.. +....+..+++ +++++||
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-~~~~~~~~~~~~~~~~~da 80 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKDL 80 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTTC
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-cccCCEEEcCCcHHHhCCC
Confidence 4689999995 9999999999999998888 99999974 689999999999742 22234555544 6899999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCc-EEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDC-ILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSM 325 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a-~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~ 325 (488)
|+||+++|.|++||++|.|++..|+++++++++.+.+++|++ |+|++|||+|++|++++++++++|+++||.||.||++
T Consensus 81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs~ 160 (333)
T 5mdh_A 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHN 160 (333)
T ss_dssp SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHHH
Confidence 999999999999999999999999999999999999999997 7999999999999999999865555668999999999
Q ss_pred HHHHHHHHHhCCCCCCceeE-EEeecCCCccccccccee--cCccc--cccCCCCCCCCChHHH--HHHHHHHhhhHHHH
Q psy12825 326 RFRVLLAQKLGLSPESVHGF-IIGEHGDSSVPVWSGVNV--AGVTL--KELNPTIGTEQDTENF--VRLHADVVNSAYEV 398 (488)
Q Consensus 326 R~~~~lA~~Lgv~p~~V~~~-V~G~HG~~~vp~~S~a~v--~g~pl--~e~~~~~~~~~~~~~~--~el~~~v~~~~~eI 398 (488)
|++++||+++|++|++|+++ ||||||++++|+||++++ +|.|+ .++.+ ++.| +++.+++++++++|
T Consensus 161 R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i~g~~~~~~~~~~-------~~~~~~~~~~~~v~~~g~eI 233 (333)
T 5mdh_A 161 RAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVK-------DDSWLKGEFITTVQQRGAAV 233 (333)
T ss_dssp HHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHC-------CHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEeccCCeeccHHHhhc-------cccccHHHHHHHHHHHHHHH
Confidence 99999999999999999987 599999999999999975 68765 35432 2344 57999999999999
Q ss_pred HHhcC-CcchhhHHHHHHHHHHHHcCC--CcEEEEEeeecC-cCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHH
Q psy12825 399 IKLKG-YTSWALGLSVASISHTLLNNT--NKIHAVSTLIQG-HHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKL 473 (488)
Q Consensus 399 i~~kg-~t~~s~A~a~~~ii~aIl~~~--~~v~~vsv~~~G-~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L 473 (488)
++.|| ++.|+.|.++.+++++|++++ ++++|++++++| +||+|+|+|||+||++ ++|++++++ ++|+++|+++|
T Consensus 234 i~~k~~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~l 312 (333)
T 5mdh_A 234 IKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREKM 312 (333)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHHH
Confidence 99765 578999999999999999985 589999999999 9999889999999999 999999998 99999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy12825 474 RKSAATISQIQKGL 487 (488)
Q Consensus 474 ~~sa~~i~~~~~~~ 487 (488)
++|+++|++.++.+
T Consensus 313 ~~sa~~L~~~~~~~ 326 (333)
T 5mdh_A 313 DLTAKELAEEKETA 326 (333)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=455.78 Aligned_cols=307 Identities=38% Similarity=0.690 Sum_probs=284.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
+||+|||+|.||++++..|+..++.++|+|+|++++++++...++.+...+....++.. +|++++++||+||++++.++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDYADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCGGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCHHHhCCCCEEEEccCCCC
Confidence 58999999999999999999988878999999999999988888877643222345655 47889999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 337 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv 337 (488)
++|++|.|++.+|+++++++++.|++++|++++|++|||++++++++++.++||++||+|++|.||+.|+++++|+++|+
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~la~~lgv 159 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGF 159 (319)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEeeCccHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHHHHHH
Q psy12825 338 SPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASIS 417 (488)
Q Consensus 338 ~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~~~ii 417 (488)
+|.+|+++|||+||++++|+||+++++|+|+.++.+++. .++++.++++.+.++++++++++.||+++|++|.++++++
T Consensus 160 ~~~~v~~~v~G~hg~~~~p~~s~~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~~~~ 238 (319)
T 1a5z_A 160 SPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIV 238 (319)
T ss_dssp CGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHTTSS-SCCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CHHHceEEEEeCCCCCcccchhhceECCEEHHHHhhccc-ccCHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876432 1456778899999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 418 HTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 418 ~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++|++|++.++++|++++|+||+ +|+|||+||++|++|+++++.++|+++|+++|++|++.|++.++.+
T Consensus 239 ~ai~~~~~~~~~~~~~~~g~~g~-~~~~~~vP~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~ 307 (319)
T 1a5z_A 239 ESIFFDEKRVLTLSVYLEDYLGV-KDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAINEI 307 (319)
T ss_dssp HHHHTTCCEEEEEEEEESSBTTB-CSEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEEEecCccCc-cceEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 8999999999999999999999999999999999999999888754
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-55 Score=446.41 Aligned_cols=304 Identities=19% Similarity=0.299 Sum_probs=274.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCC-----CeEEEEeCC----hhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIY-----SNFCLIDSN----EDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSE 244 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~-----~el~L~Di~----~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~ 244 (488)
+++||+|||| |.+|+++++.|+.+++. .+|+|+|++ ++++++.++||.|.. +.....+..++| +++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~-~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA-FPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT-CTTEEEEEEESSHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc-ccccCcEEEecCcHHHhC
Confidence 4689999998 99999999999988865 499999999 888999999999963 122346666677 47899
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCCh
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNL 322 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~l 322 (488)
|||+||++++.++++|++|.|++.+|+++++++++.+.++| |++|+|++|||+|++|+++++.+ +||++||+|+ |.|
T Consensus 83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~-t~L 161 (329)
T 1b8p_A 83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAM-LRL 161 (329)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC-CHH
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEe-ecH
Confidence 99999999999999999999999999999999999999997 99999999999999999999998 9999999887 999
Q ss_pred HHHHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 323 DSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 323 ds~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
|+.|+++++|+++|++|++|+. +||||||++++|+||+++++|.|+.++++. ++...+++.+++++++++|++.
T Consensus 162 d~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v~g~~~~~~~~~-----~~~~~~~i~~~v~~~g~eii~~ 236 (329)
T 1b8p_A 162 DHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMIND-----DAWNRDTFLPTVGKRGAAIIDA 236 (329)
T ss_dssp HHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCC-----HHHHHHTHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeECCeeHHHHhcc-----chhhHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999995 689999999999999999999999886542 0112367999999999999999
Q ss_pred cCCcchhh-HHHHHHHHHHHHcC-CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHH
Q psy12825 402 KGYTSWAL-GLSVASISHTLLNN-TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAA 478 (488)
Q Consensus 402 kg~t~~s~-A~a~~~ii~aIl~~-~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~ 478 (488)
||.++|++ |.++++++++|+++ ++++++++++++|+||+|+|+|||+||++ ++|++++++ ++|+++|+++|++|++
T Consensus 237 kg~~~~~~~a~a~~~~~~ai~~~~~~~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~~l~~~e~~~l~~s~~ 315 (329)
T 1b8p_A 237 RGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGLSIDAFSQERINVTLN 315 (329)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCcEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCCCCCHHHHHHHHHHHH
Confidence 99887764 56889999999998 89999999999999999999999999999 999999998 9999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++.++.+
T Consensus 316 ~l~~~~~~~ 324 (329)
T 1b8p_A 316 ELLEEQNGV 324 (329)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=439.09 Aligned_cols=289 Identities=23% Similarity=0.385 Sum_probs=262.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE---cCCcc-ccCCCcEEEEe
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES---GSDIA-MSEGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~---ttd~e-al~dADiVIit 252 (488)
|||+|||| |.+|+++++.|+..++..+|+|+|+++ .++.++||.|... ..++.. ++|++ +++|||+||++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~---~~~l~~~~~t~d~~~a~~~aDvVvi~ 75 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIET---RATVKGYLGPEQLPDCLKGCDVVVIP 75 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSS---SCEEEEEESGGGHHHHHTTCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCc---CceEEEecCCCCHHHHhCCCCEEEEC
Confidence 59999998 999999999999888888999999987 6788999999752 235665 35785 79999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHH----HHHHHhcCCCCCcEEeecCChHHHHHH
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLT----YISWKLSGFPKNRVIGSGTNLDSMRFR 328 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t----~~~~k~sg~p~~rViG~gt~lds~R~~ 328 (488)
+|.|+++|++|.|++.+|+++++++++.|.+++|++|+|++|||+|+++ +++++.++||++||||+ |.||+.|++
T Consensus 76 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~-t~Ld~~r~~ 154 (314)
T 1mld_A 76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRAN 154 (314)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEEC-CHHHHHHHH
T ss_pred CCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEe-ecccHHHHH
Confidence 9999999999999999999999999999999999999999999999998 56778889999999999 999999999
Q ss_pred HHHHHHhCCCCCCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc---CC
Q psy12825 329 VLLAQKLGLSPESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK---GY 404 (488)
Q Consensus 329 ~~lA~~Lgv~p~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k---g~ 404 (488)
+++|+++|++|++|+++||||| |++++|+||+++ |..+ +++++|+++.+++++++++|++.| |+
T Consensus 155 ~~la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~----~~~~--------~~~~~~~~~~~~v~~~g~eii~~k~~~g~ 222 (314)
T 1mld_A 155 AFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCT----PKVD--------FPQDQLSTLTGRIQEAGTEVVKAKAGAGS 222 (314)
T ss_dssp HHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCB----SCCC--------CCHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHhCcChHhEEEEEccCCCCCcEeeecccCC----Cccc--------CCHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 9999999999999999999999 899999999997 3221 457889999999999999999955 78
Q ss_pred cchhhHHHHHHHHHHHHcC---CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHHHHHHHH
Q psy12825 405 TSWALGLSVASISHTLLNN---TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLRKSAATI 480 (488)
Q Consensus 405 t~~s~A~a~~~ii~aIl~~---~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~~sa~~i 480 (488)
++|++|.++++++++|++| ++.++++ ++++|+| ++|+|||+||++|++|++++.++ +|+++|+++|++|++.|
T Consensus 223 t~~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g~y--~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l 299 (314)
T 1mld_A 223 ATLSMAYAGARFVFSLVDAMNGKEGVVEC-SFVKSQE--TDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPEL 299 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCTTCEEE-EEEECCS--SSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCcCCCcceEEE-EEeCCcc--CCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999998 3478888 7999999 78999999999999999999887 99999999999999999
Q ss_pred HHHHHhh
Q psy12825 481 SQIQKGL 487 (488)
Q Consensus 481 ~~~~~~~ 487 (488)
++.++.+
T Consensus 300 ~~~~~~~ 306 (314)
T 1mld_A 300 KASIKKG 306 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877653
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-53 Score=427.77 Aligned_cols=308 Identities=29% Similarity=0.462 Sum_probs=281.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
+++||+|||+|.||++++..|+..++. +|+|+|++++++++...|+.+... .....++..++|++++++||+||++++
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~~aDiVi~avg 81 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITAS 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeCC
Confidence 357999999999999999999998864 699999999999987778876521 112457777788999999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
.|+++|++|.|++.+|.+++++++++|++++|+++++++|||++++++++++.+++|++||+|++|.+|+.|++.+++++
T Consensus 82 ~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~la~~ 161 (317)
T 2ewd_A 82 IPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQH 161 (317)
T ss_dssp CSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEeccCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH--hcCCcchhhHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK--LKGYTSWALGLS 412 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~--~kg~t~~s~A~a 412 (488)
+|+++.+++++|||+||++++|+||+++++|+|+.+++.+ ..+++++++++.+.++.+++++++ .+|++.|++|.+
T Consensus 162 lg~~~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~--g~~~~~~id~~~~~~~~~~~ei~~~~g~g~~~~~~a~a 239 (317)
T 2ewd_A 162 FGVNASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQ--GLITQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAA 239 (317)
T ss_dssp HTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHH
T ss_pred hCcChhhceEEEEecCCCceeEEeeccccCCEEHHHHHhc--cCCCHHHHHHHHHHHHhhHHHHHHhhcCCchHHHHHHH
Confidence 9999999999999999999999999999999998876532 124577788888888899999998 578899999999
Q ss_pred HHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 413 VASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 413 ~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
+++++++|++|++.+++++++++|+||+ +|+|||+||++|++|+++++.++|+++|+++|++|++.|++.++.+
T Consensus 240 ~~~~~~ai~~~~~~~~~~~~~~~G~~g~-~~~~~~~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 313 (317)
T 2ewd_A 240 AVKMAEAYLKDKKAVVPCSAFCSNHYGV-KGIYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVNTISKVL 313 (317)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEESSSTTC-SSEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEEEecCccCC-cceEEEeEEEEcCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 7999999999999999999999999999999999999999988764
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=424.62 Aligned_cols=300 Identities=29% Similarity=0.481 Sum_probs=269.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
++||+|||+|.||++++..|+..++..+|+|+|++++++++...++.+...+. ...++. ++|++++++||+||++++.
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~d~~~~~~aDvViiav~~ 79 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV-INDWAALADADVVISTLGN 79 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE-ESCGGGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE-eCCHHHhCCCCEEEEecCC
Confidence 36999999999999999999998866699999999999999888887654211 123333 4688899999999999999
Q ss_pred ccC----CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHH
Q psy12825 256 RSL----VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLL 331 (488)
Q Consensus 256 ~~k----~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~l 331 (488)
+++ +|++|.|++.+|+++++++++.|.+++|++++|++|||++++++++++.+++|++||+|+||.+|+.|++..+
T Consensus 80 ~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig~gt~ld~~r~~~~~ 159 (309)
T 1hyh_A 80 IKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAV 159 (309)
T ss_dssp GGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHHHHhcCCCHHHEeecCccchHHHHHHHH
Confidence 998 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcCCcchhhHH
Q psy12825 332 AQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKGYTSWALGL 411 (488)
Q Consensus 332 A~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~ 411 (488)
++.+++++.+|++++||+||++++|+||++.++|.|+.++.+ ++++.|+++.++++++++++++.||+++|++|.
T Consensus 160 a~~l~~~~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-----~~~~~~~~~~~~v~~~g~~ii~~kg~~~~~~a~ 234 (309)
T 1hyh_A 160 GEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLAD-----AGDIDLAAIEEEARKGGFTVLNGKGYTSYGVAT 234 (309)
T ss_dssp HHHHTCCGGGCBCCEEBCTTTTCEECTTTCEETTEEGGGC----------CCHHHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHhCCChhheEEEEEeCCCCcEeeccccceECCEEHHHhcc-----CCHHHHHHHHHHHHHhHHHHHhccCCchHHHHH
Confidence 999999999999999999999999999999999999988753 346678899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 412 SVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 412 a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++++|+++++.+++++++++| +|+|+|+||+++++|+++++.++|+++|+++|++|++.|++.++.+
T Consensus 235 a~~~~~~ai~~~~~~~~~~~~~~~g-----~~~~~~vP~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 305 (309)
T 1hyh_A 235 SAIRIAKAVMADAHAELVVSNRRDD-----MGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRFDEI 305 (309)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTT-----TCSEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEEEEECC-----CCeEEEEEEEEeCCceEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 5899999999999999999999999999999999999999887754
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=428.41 Aligned_cols=292 Identities=24% Similarity=0.365 Sum_probs=263.8
Q ss_pred CCCceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE---cCCc-cccCCCcEE
Q psy12825 175 SPDQKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES---GSDI-AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~---ttd~-eal~dADiV 249 (488)
.+++||+||| +|.+|+++++.|+..++..+|+|+|++++ ++.++|+.+... ..++.. ++|+ ++++|||+|
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~---~~~v~~~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDT---GAVVRGFLGQQQLEAALTGMDLI 80 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCS---SCEEEEEESHHHHHHHHTTCSEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccc---cceEEEEeCCCCHHHHcCCCCEE
Confidence 4568999999 59999999999998887779999999887 778899988542 224544 4576 679999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh----HHHHHHHhcCCCCCcEEeecCChHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV----LTYISWKLSGFPKNRVIGSGTNLDSM 325 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi----~t~~~~k~sg~p~~rViG~gt~lds~ 325 (488)
|++++.++++|++|.|++..|+++++++++.+.+++|++|++++|||+|+ +++++++.++||++||||+ |.||+.
T Consensus 81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~-~~Ld~~ 159 (326)
T 1smk_A 81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVV 159 (326)
T ss_dssp EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEEC-CHHHHH
T ss_pred EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEE-eehHHH
Confidence 99999999999999999999999999999999999999999999999998 7777799999999999999 999999
Q ss_pred HHHHHHHHHhCCCCCCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhc--
Q psy12825 326 RFRVLLAQKLGLSPESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLK-- 402 (488)
Q Consensus 326 R~~~~lA~~Lgv~p~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~k-- 402 (488)
|++++||+++|++|++|+++||||| |++++|+||++++.+ .+++++|+++.+++++++++|++.|
T Consensus 160 r~~~~la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~------------~~~~~~~~~~~~~v~~~g~eii~~k~~ 227 (326)
T 1smk_A 160 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPS------------SFTQEEISYLTDRIQNGGTEVVEAKAG 227 (326)
T ss_dssp HHHHHHHHHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCC------------CCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCcChhheEEEEecccCCceEEEecccCeecC------------cCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999 999999999998742 1347789999999999999999976
Q ss_pred -CCcchhhHHHHHHHHHHH---HcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHH
Q psy12825 403 -GYTSWALGLSVASISHTL---LNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSA 477 (488)
Q Consensus 403 -g~t~~s~A~a~~~ii~aI---l~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa 477 (488)
|+++|++|.++++++++| ++|++.+++++ +++|+ +|+|+|||+||+++++|++++++ ++|+++|+++|++|+
T Consensus 228 ~gs~~~~~a~a~~~~~~ai~~~~~~~~~v~~~~-~~~g~--~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~ 304 (326)
T 1smk_A 228 AGSATLSMAYAAVKFADACLRGLRGDAGVIECA-FVSSQ--VTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAK 304 (326)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHTCSCEEEEE-EEECC--SSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeEEEEE-eeccc--cCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHH
Confidence 888999999999999999 99999999998 78897 56899999999999999999999 999999999999999
Q ss_pred HHHHHHHHhh
Q psy12825 478 ATISQIQKGL 487 (488)
Q Consensus 478 ~~i~~~~~~~ 487 (488)
+.|++.++.+
T Consensus 305 ~~l~~~~~~~ 314 (326)
T 1smk_A 305 KELAGSIEKG 314 (326)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=401.50 Aligned_cols=300 Identities=15% Similarity=0.187 Sum_probs=246.1
Q ss_pred CceEEEEecccchHHH--HHHHHH--cCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 177 DQKITVVGAGQVGMAC--TYSILT--QGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~i--a~~La~--~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
++||+|||||++ .+. +..|+. .++ .+||+|+|+++++++. +.++.+...... .+|..++|+ ++++||||||
T Consensus 2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~-~~v~~t~d~~~al~~AD~Vi 78 (417)
T 1up7_A 2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDR-FKVLISDTFEGAVVDAKYVI 78 (417)
T ss_dssp CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTS-SEEEECSSHHHHHTTCSEEE
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCC-eEEEEeCCHHHHhCCCCEEE
Confidence 579999999986 332 234566 667 7899999999999986 778877532222 678888897 8999999999
Q ss_pred EecccccCCCcchHh--------------------hHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCC
Q psy12825 251 ITAGVRSLVGETRLQ--------------------LVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGF 310 (488)
Q Consensus 251 itag~~~k~G~~r~d--------------------ll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~ 310 (488)
+++++++++|++|++ ++.+|++++++++++|+++| ++|+||+|||++++|+++++++
T Consensus 79 itagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~~k~~-- 155 (417)
T 1up7_A 79 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFVRNYL-- 155 (417)
T ss_dssp ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHHHHTT--
T ss_pred EcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHHHHhC--
Confidence 999999988888743 25899999999999999999 9999999999999999999986
Q ss_pred CCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-----------ecCCCcccccccc---eecC---cccc-ccC
Q psy12825 311 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-----------EHGDSSVPVWSGV---NVAG---VTLK-ELN 372 (488)
Q Consensus 311 p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-----------~HG~~~vp~~S~a---~v~g---~pl~-e~~ 372 (488)
|++||||+++.+ .|+++.+|+.+|++|++|+++|+| +||++++|.||.. ++.+ .|+. ++.
T Consensus 156 p~~rviG~c~~~--~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T 1up7_A 156 EYEKFIGLCNVP--INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFY 233 (417)
T ss_dssp CCSSEEECCSHH--HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHH
T ss_pred CCCCEEEeCCCH--HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCcEehhhHHHHHHHhhCCCcCCchHHHHH
Confidence 777999995554 499999999999999999999999 9999999999996 5555 5662 221
Q ss_pred CCCC--------C-CCChHHHHHH---------HHHHhhhHHHHH----------HhcCCcchhhHHHHHHHHHHHHcCC
Q psy12825 373 PTIG--------T-EQDTENFVRL---------HADVVNSAYEVI----------KLKGYTSWALGLSVASISHTLLNNT 424 (488)
Q Consensus 373 ~~~~--------~-~~~~~~~~el---------~~~v~~~~~eIi----------~~kg~t~~s~A~a~~~ii~aIl~~~ 424 (488)
+.++ . .+.++.++++ .+++++.+++++ ..||++.| +.+++++++||++|+
T Consensus 234 ~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t~~--~~~a~~ii~AI~~d~ 311 (417)
T 1up7_A 234 DSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMY--STAAAHLIRDLETDE 311 (417)
T ss_dssp HHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTH--HHHHHHHHHHHHSSS
T ss_pred HhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCcHH--HHHHHHHHHHHHcCC
Confidence 1000 0 0123333443 466777788988 45666644 778999999999999
Q ss_pred CcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Q psy12825 425 NKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKG 486 (488)
Q Consensus 425 ~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~ 486 (488)
+.++++|++|+|+| |+|+|+++|+||+||++|++++..++|+++|+++++.++...+..++.
T Consensus 312 ~~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~~L~~~e~~~l~~~~~~e~l~veA 374 (417)
T 1up7_A 312 GKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEA 374 (417)
T ss_dssp CEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 899999999999999999999999999999999999999888866654
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=374.12 Aligned_cols=312 Identities=37% Similarity=0.688 Sum_probs=281.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+++||+|||+|.||+.++..|+..+..++|+|+|++++++++.+.++.+...+....++..+++++++++||+||++++
T Consensus 5 ~~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 5 VKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAG 84 (319)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCC
Confidence 34579999999999999999999998777999999999888877778776543222456666668899999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHH
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQK 334 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~ 334 (488)
.++++|++|.|++.+|+++++++++.|.+++|++++++++||++.+++++++.+++|+++|+|.+|.+|+.|++..+++.
T Consensus 85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~~~~l~~~r~~~~~a~~ 164 (319)
T 1lld_A 85 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQ 164 (319)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEECTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHhcCCCHHHEeeccccHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred hCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCC-CChHHHHHHHHHHhhhHHHHHHhcCCcchhhHHHH
Q psy12825 335 LGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTE-QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSV 413 (488)
Q Consensus 335 Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~-~~~~~~~el~~~v~~~~~eIi~~kg~t~~s~A~a~ 413 (488)
+++++.+++.++||+||++++|+|+++.+++.|+.++....+.. .+++.++++.+.++..+++|++.+|.+.|+++.+.
T Consensus 165 ~~v~~~~v~~~~~G~~g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~G~~~~~~a~~~ 244 (319)
T 1lld_A 165 TGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSG 244 (319)
T ss_dssp HTCCGGGEECCEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSCCSCCHHHHHHH
T ss_pred hCCCHHHeEEEEEeCCCCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999998875432222 34445788888999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy12825 414 ASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487 (488)
Q Consensus 414 ~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~~~~~~~ 487 (488)
++++++|+++++.++++|++++|+|+. .+.++++||.++++|++++++++|+++|+++|++|++.|++.++.+
T Consensus 245 ~sm~~di~~~~~~ei~~s~~~~G~~~~-~~~~~gvp~~~~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~ 317 (319)
T 1lld_A 245 VDIIEAVLHDTNRILPVSSMLKDFHGI-SDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQF 317 (319)
T ss_dssp HHHHHHHHTTCCEEEEEEEECSSBTTB-CSSEEEEEEEEETTEEECCSCCCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEEEEecCcCCc-cceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987 6899999999999999999999999999999999999999998765
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=370.82 Aligned_cols=303 Identities=19% Similarity=0.274 Sum_probs=267.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCC-----CeEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIY-----SNFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~-----~el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dA 246 (488)
+++||+|+|| |.+|++++..|+.++.. .+|+++|+++ +++++..+|+.|.. +.....+..+.+ +++++|+
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~-~~~~~di~~~~~~~~a~~~~ 81 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA-FPLLAGLEATDDPKVAFKDA 81 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT-CTTEEEEEEESCHHHHTTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccc-ccccCCeEeccChHHHhCCC
Confidence 4579999998 99999999999988764 3899999975 56777888998753 111234555455 4789999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCchhHHHHHHHhc-CCCCCcEEeecCChHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVDVLTYISWKLS-GFPKNRVIGSGTNLDS 324 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~gt~lds 324 (488)
|+||.+++.+++++++|.+++..|+.+.+++++.+.+++ |+++++++|||++.++++..+.+ ++||.+++|. |.+|+
T Consensus 82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~-tkl~~ 160 (327)
T 1y7t_A 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAM-TRLDH 160 (327)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC-CHHHH
T ss_pred CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheecc-chHHH
Confidence 999999999998999999999999999999999999997 99999999999999999888877 7999999988 99999
Q ss_pred HHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHhcC
Q psy12825 325 MRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKLKG 403 (488)
Q Consensus 325 ~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~kg 403 (488)
.|+.+.+++.+|+++..++. +|||+||++++|+|+++.++|+|+.++.+. +..++++.+++++++++|++.||
T Consensus 161 er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~l~~~~~~------~~~~~~~~~~v~~~g~~ii~~kg 234 (327)
T 1y7t_A 161 NRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM------EWYEKVFIPTVAQRGAAIIQARG 234 (327)
T ss_dssp HHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH------HHHHHTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCeeHHHhccc------hhHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999995 799999999999999999999999876421 12247899999999999999999
Q ss_pred Ccchh-hHHHHHHHHHHHHcC--CCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHHHHHHHH
Q psy12825 404 YTSWA-LGLSVASISHTLLNN--TNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 404 ~t~~s-~A~a~~~ii~aIl~~--~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L~~sa~~ 479 (488)
.++|+ +|.++++++++|++| ++++++++++++|+||+|+|+|||+||++ ++|++++++ ++|+++|+++|++|++.
T Consensus 235 ~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~s~~~ 313 (327)
T 1y7t_A 235 ASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEITAQE 313 (327)
T ss_dssp SCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHHHHHH
Confidence 87775 578999999999999 68999999999999999999999999999 999999988 99999999999999999
Q ss_pred HHHHHHhh
Q psy12825 480 ISQIQKGL 487 (488)
Q Consensus 480 i~~~~~~~ 487 (488)
|++.++.+
T Consensus 314 l~~~~~~~ 321 (327)
T 1y7t_A 314 LLDEMEQV 321 (327)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=394.90 Aligned_cols=298 Identities=17% Similarity=0.211 Sum_probs=241.5
Q ss_pred CceEEEEecccc-hHHHHHHHHH--cCC-CCeEEEEeCCh--hHHHHHHHHHhhcC--CCCCCCcEEEcCCc-cccCCCc
Q psy12825 177 DQKITVVGAGQV-GMACTYSILT--QGI-YSNFCLIDSNE--DRCKGEMLDLQHGA--PFLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGAG~v-G~~ia~~La~--~~l-~~el~L~Di~~--e~l~g~~~dL~~~~--~~~~~~~v~~ttd~-eal~dAD 247 (488)
++||+|||||++ |..++..|+. .++ .++|+|+|+++ +++++. .++.+.. ......+|..++|+ ++++|||
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD 85 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLTLDRRRALDGAD 85 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEeCCHHHHhCCCC
Confidence 579999999998 6666777877 566 67999999999 998873 4555432 13345788888897 7999999
Q ss_pred EEEEecccccCCCcchHhh--------------------HhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHh
Q psy12825 248 IVIITAGVRSLVGETRLQL--------------------VDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKL 307 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dl--------------------l~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~ 307 (488)
|||++++.++++|++|+++ +.+|++++++++++|+++||++|+|++|||+|++|++++++
T Consensus 86 ~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~ 165 (450)
T 1s6y_A 86 FVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY 165 (450)
T ss_dssp EEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence 9999999999888888744 78999999999999999999999999999999999999998
Q ss_pred cCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-----------ecCCCcccccccceec----C-------
Q psy12825 308 SGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-----------EHGDSSVPVWSGVNVA----G------- 365 (488)
Q Consensus 308 sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-----------~HG~~~vp~~S~a~v~----g------- 365 (488)
+ |++||||+ |+.. .|+++.+|+.||++|++|+++|+| +||++++|.|+...++ |
T Consensus 166 ~--p~~rViG~-c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~d~~p~~~~~~~~~~~~g~~~~~~~ 241 (450)
T 1s6y_A 166 T--KQEKVVGL-CNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIV 241 (450)
T ss_dssp C--CCCCEEEC-CSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHSCC-----------
T ss_pred C--CCCCEEEe-CCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCcCchHhHHHHHhhhccccccccccc
Confidence 6 77799999 5554 499999999999999999999999 8999999999886543 2
Q ss_pred -cccc------------ccCCCCCCCCChHH-------------HHHHHHHHhhhHHHHH-----HhcC-----Ccchhh
Q psy12825 366 -VTLK------------ELNPTIGTEQDTEN-------------FVRLHADVVNSAYEVI-----KLKG-----YTSWAL 409 (488)
Q Consensus 366 -~pl~------------e~~~~~~~~~~~~~-------------~~el~~~v~~~~~eIi-----~~kg-----~t~~s~ 409 (488)
.|+. +|.+++ .+.++. +.++.+++++.+++++ ..|+ .+++++
T Consensus 242 ~~~~~~~~~~~~g~~p~~y~~yy--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~~~~~~ 319 (450)
T 1s6y_A 242 DLGWEPDFLKGLKVLPCPYHRYY--FQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAYY 319 (450)
T ss_dssp -CCCCHHHHHHHCSBCCGGGHHH--HSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CCSCCH
T ss_pred cCccHHHHHHhcCCccchhhhhh--cCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcccchHH
Confidence 2331 111110 011222 1244566777778888 4443 445577
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHH
Q psy12825 410 GLSVASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATIS 481 (488)
Q Consensus 410 A~a~~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~ 481 (488)
|.++++|++||++|++.++++|++++|+| |+|+|+++|+||+||++|++++..++|+++|+++++.++..=+
T Consensus 320 ~~~a~~ii~AI~~d~~~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~~L~~~e~~l~~~~~~~e~ 392 (450)
T 1s6y_A 320 SDAACSLISSIYNDKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVGDLPVAVRGLVQQIKSFER 392 (450)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecCCCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999997 8999999999999999999999999999999999999875443
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=382.17 Aligned_cols=298 Identities=14% Similarity=0.196 Sum_probs=234.4
Q ss_pred CCceEEEEecccc-hHHHHHHHHHc--CC-CCeEEEEeCChhHHHHHHHHHhhcC--CCCCCCcEEEcCCc-cccCCCcE
Q psy12825 176 PDQKITVVGAGQV-GMACTYSILTQ--GI-YSNFCLIDSNEDRCKGEMLDLQHGA--PFLRSPKIESGSDI-AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGAG~v-G~~ia~~La~~--~l-~~el~L~Di~~e~l~g~~~dL~~~~--~~~~~~~v~~ttd~-eal~dADi 248 (488)
+++||+|||||++ +..++..|+.+ ++ ..+|+|+|++++++++. .++.+.. ......+|..++|+ ++++||||
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~ 105 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI-AGACDVFIREKAPDIEFAATTDPEEAFTDVDF 105 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH-HHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH-HHHHHHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence 4579999999998 44467788887 77 67999999999999874 5665532 12345788888998 78999999
Q ss_pred EEEecccccCCCcchHhh--------------------HhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhc
Q psy12825 249 VIITAGVRSLVGETRLQL--------------------VDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLS 308 (488)
Q Consensus 249 VIitag~~~k~G~~r~dl--------------------l~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~s 308 (488)
||++++.++++|++|+++ +.+|++++++++++|+++||++|+|++|||+|++|+++++.+
T Consensus 106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~ 185 (472)
T 1u8x_X 106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR 185 (472)
T ss_dssp EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS
T ss_pred EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence 999999988888777444 789999999999999999999999999999999999999986
Q ss_pred CCCCCcEEeecCChHHHHHHHHHHHHhCCCC-CCceeEEEe-----------e-cCCCccccccccee-cC-c-------
Q psy12825 309 GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVHGFIIG-----------E-HGDSSVPVWSGVNV-AG-V------- 366 (488)
Q Consensus 309 g~p~~rViG~gt~lds~R~~~~lA~~Lgv~p-~~V~~~V~G-----------~-HG~~~vp~~S~a~v-~g-~------- 366 (488)
|++||||+ |+.. .|+++.+|+.||++| ++|+++|+| + ||++++|.||...+ +| .
T Consensus 186 --p~~rViG~-c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~d~~p~~~~~~~~~g~~~~~~~~~ 261 (472)
T 1u8x_X 186 --PNSKILNI-CDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEA 261 (472)
T ss_dssp --TTCCEEEC-CSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC----
T ss_pred --CCCCEEEe-CCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCCEehHhHHHHHHhcCCCccccccc
Confidence 77899999 5553 499999999999998 999999999 8 99999999998654 33 1
Q ss_pred ---ccc-cc-------------CCC-C-CCCC-ChHHHHH-H-----HHHHhh----hHHHHHH-h--cC---Ccch---
Q psy12825 367 ---TLK-EL-------------NPT-I-GTEQ-DTENFVR-L-----HADVVN----SAYEVIK-L--KG---YTSW--- 407 (488)
Q Consensus 367 ---pl~-e~-------------~~~-~-~~~~-~~~~~~e-l-----~~~v~~----~~~eIi~-~--kg---~t~~--- 407 (488)
++. ++ .|. + ..++ .++.+++ . .+.++. ..+++++ . ++ .+.|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (472)
T 1u8x_X 262 VEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKID 341 (472)
T ss_dssp ---CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCC
T ss_pred cccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccc
Confidence 111 11 110 0 0000 0111111 0 111112 2222233 3 55 4445
Q ss_pred hhHHHHHHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 408 ALGLSVASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 408 s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
+++.++++|++||++|++.++++|++|+|+| |+|+|+++|+||+||++|++++..++|+++|+++++.-..
T Consensus 342 ~~~~~a~~ii~AI~~d~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~~Lp~~~~~l~~~~~~ 413 (472)
T 1u8x_X 342 DHASYIVDLARAIAYNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQVS 413 (472)
T ss_dssp TTTHHHHHHHHHHHHTCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999997 8999999999999999999999999999999999987543
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=332.14 Aligned_cols=293 Identities=18% Similarity=0.197 Sum_probs=221.1
Q ss_pred CCCceEEEEecccch--HHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVG--MACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG--~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
|+.+||+|||||++| .+++..|+... +..+|+|+|+++++++.... +.+.... ...+|+.|+|+ +|++||||||
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~-~~~~l~~-~~~~I~~TtD~~eAl~dADfVI 80 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEV-IGNHSGN-GRWRYEAVSTLKKALSAADIVI 80 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHH-HHTTSTT-SCEEEEEESSHHHHHTTCSEEE
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHH-HHHHHhc-cCCeEEEECCHHHHhcCCCEEE
Confidence 456899999999996 46777777643 33499999999988765422 3222211 45678889998 6899999999
Q ss_pred Eecc------------cccCCCcchH--hh--------HhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhc
Q psy12825 251 ITAG------------VRSLVGETRL--QL--------VDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLS 308 (488)
Q Consensus 251 itag------------~~~k~G~~r~--dl--------l~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~s 308 (488)
++++ +|+|+|+.|. |. ..+|++++++++++|+++||++|+|++|||+|++|+++++.
T Consensus 81 ~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~- 159 (450)
T 3fef_A 81 ISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV- 159 (450)
T ss_dssp ECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH-
T ss_pred eccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH-
Confidence 9985 5788888665 54 45999999999999999999999999999999999999987
Q ss_pred CCCCCcEEeecCChHHHHHHHHHHHHh----C---CCCCCceeEEEe-ecCCCcccccccceecCccccccC----C---
Q psy12825 309 GFPKNRVIGSGTNLDSMRFRVLLAQKL----G---LSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELN----P--- 373 (488)
Q Consensus 309 g~p~~rViG~gt~lds~R~~~~lA~~L----g---v~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~----~--- 373 (488)
+|++||||+ |+.. .++++.+|+.| | +++++|+..++| || +.||++++++|+++.+.+ .
T Consensus 160 -~p~~rviG~-C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~ 232 (450)
T 3fef_A 160 -FPGIKAIGC-CHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH----FTWITKASYRHIDLLPIFREFSAHYG 232 (450)
T ss_dssp -CTTCEEEEC-CSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT----EEEEEEEEETTEEHHHHHHHHHHHHT
T ss_pred -CCCCCEEEe-CCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC----eEeEEEEEECCEEChHHHHHHHHhhc
Confidence 688999999 8875 78999999999 5 779999999999 99 999999999998765411 0
Q ss_pred --CCC--------CCC-----------------------------------ChHH---------H--HHHHHHHhhhHHH
Q psy12825 374 --TIG--------TEQ-----------------------------------DTEN---------F--VRLHADVVNSAYE 397 (488)
Q Consensus 374 --~~~--------~~~-----------------------------------~~~~---------~--~el~~~v~~~~~e 397 (488)
.+. ..+ +++. | ++..+.. +.-.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~ 311 (450)
T 3fef_A 233 ESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKR-QETER 311 (450)
T ss_dssp TTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHH-HHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHH-HHHHH
Confidence 000 000 0000 1 0000000 00011
Q ss_pred HHHhcCC-cchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcC-CCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHH
Q psy12825 398 VIKLKGY-TSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH-GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475 (488)
Q Consensus 398 Ii~~kg~-t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~y-gl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~ 475 (488)
....... ..-..+.+++++++||++|++.++++|++|+|.| |+|+|+++|+||+|+++|+.++..++||+.++++++.
T Consensus 312 ~~~~~~~~~~~~~~e~~~~ii~aI~~d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~g~Lp~~~~~l~~~ 391 (450)
T 3fef_A 312 LIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAAR 391 (450)
T ss_dssp HHHTTCCCCCSCCSCCHHHHHHHHTTSCCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCCCCCCHHHHHHHHH
T ss_pred HhcCCcCcCcCccHHHHHHHHHHHHcCCCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecccCCCCHHHHHHHHH
Confidence 1111000 0001123468999999999999999999999996 9999999999999999999999989999999999876
Q ss_pred HHH
Q psy12825 476 SAA 478 (488)
Q Consensus 476 sa~ 478 (488)
-..
T Consensus 392 ~~~ 394 (450)
T 3fef_A 392 HIS 394 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=324.69 Aligned_cols=293 Identities=21% Similarity=0.198 Sum_probs=216.3
Q ss_pred CCCceEEEEecccchHHH--HHHHHH-cCC-CCeEEEEeCChhHHHHHHHHHhhcC-CCCCCCcEEEcCCc-cccCCCcE
Q psy12825 175 SPDQKITVVGAGQVGMAC--TYSILT-QGI-YSNFCLIDSNEDRCKGEMLDLQHGA-PFLRSPKIESGSDI-AMSEGSRI 248 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~i--a~~La~-~~l-~~el~L~Di~~e~l~g~~~dL~~~~-~~~~~~~v~~ttd~-eal~dADi 248 (488)
|+++||+|||||+||++. +..|+. .++ ..+|+|+|++++++++......+.. ......+|..++|+ ++++||||
T Consensus 1 m~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~ 80 (480)
T 1obb_A 1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 80 (480)
T ss_dssp -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCE
Confidence 346799999999987655 557764 344 6799999999999987544333321 12245788888998 78999999
Q ss_pred EEEeccc------------ccCCCcch--Hh------------hHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHH
Q psy12825 249 VIITAGV------------RSLVGETR--LQ------------LVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTY 302 (488)
Q Consensus 249 VIitag~------------~~k~G~~r--~d------------ll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~ 302 (488)
||++++. |.|+|+.+ .+ ++.+|++++++++++|+++||+||+|++|||++++|+
T Consensus 81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~ 160 (480)
T 1obb_A 81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT 160 (480)
T ss_dssp EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence 9999976 45666655 44 4789999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCcccc------------
Q psy12825 303 ISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLK------------ 369 (488)
Q Consensus 303 ~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~------------ 369 (488)
++++ +|++||||+++.+++ +++++ +.+|++|++|+++|+| || +.||.+.+.+|.++.
T Consensus 161 ~~~k---~p~~rviG~c~~~~~--~~~~l-~~lgv~~~~v~~~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~ 230 (480)
T 1obb_A 161 LVTR---TVPIKAVGFCHGHYG--VMEIV-EKLGLEEEKVDWQVAGVNH----GIWLNRFRYNGGNAYPLLDKWIEEKSK 230 (480)
T ss_dssp HHHH---HSCSEEEEECSGGGH--HHHHH-HHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHHHHHHTGG
T ss_pred HHHH---CCCCcEEecCCCHHH--HHHHH-HHhCCCHHHceEEEEeecc----hhhhhheeeCCeEcHHHHHHHHHccCc
Confidence 9988 688999999666664 78999 9999999999999999 99 777766666554321
Q ss_pred -----------------------------------ccC------C---CCCCC--CCh-----HHH----HHHHHHHhhh
Q psy12825 370 -----------------------------------ELN------P---TIGTE--QDT-----ENF----VRLHADVVNS 394 (488)
Q Consensus 370 -----------------------------------e~~------~---~~~~~--~~~-----~~~----~el~~~v~~~ 394 (488)
+|. + ++.+. ... .++ .+..+.+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~ 310 (480)
T 1obb_A 231 DWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITKKV 310 (480)
T ss_dssp GCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHHHHH
Confidence 111 1 00000 000 011 1111111122
Q ss_pred HHHHHHhc---C--------Ccch----------------hhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEE
Q psy12825 395 AYEVIKLK---G--------YTSW----------------ALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFL 446 (488)
Q Consensus 395 ~~eIi~~k---g--------~t~~----------------s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~ 446 (488)
-+++++.. . .++| ..+..++.+++||++|.+.++.+||.|+|. .|+|+|+++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~~~~~vnv~N~G~I~~lp~d~vV 390 (480)
T 1obb_A 311 AKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNKARFVVNIPNKGIIHGIDDDVVV 390 (480)
T ss_dssp HHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCCEEEEEEEECTTSSTTSCTTSEE
T ss_pred HHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCCeEEEEEeeCCceeCCCCCCeEE
Confidence 22333222 1 0111 112457899999999999999999999997 899999999
Q ss_pred EEEEEEcCCceEEEeccC-CCHHHHHH-HHHHH
Q psy12825 447 SLPCVMADNGVTHIINQN-LTPDEAEK-LRKSA 477 (488)
Q Consensus 447 svPv~igk~Gv~~i~~l~-L~~~E~~~-L~~sa 477 (488)
|+||+|+++|++++...+ ||+..+++ ++.-.
T Consensus 391 Evp~~v~~~G~~p~~~g~~lP~~~~~l~~~~~~ 423 (480)
T 1obb_A 391 EVPALVDKNGIHPEKIEPPLPDRVVKYYLRPRI 423 (480)
T ss_dssp EEEEEEETTEEEECCCSSCCCHHHHHHTHHHHH
T ss_pred EEEEEEcCCCCEeeccCCCCCHHHHhHHHHHHH
Confidence 999999999999998888 99999998 66543
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=311.81 Aligned_cols=284 Identities=20% Similarity=0.198 Sum_probs=208.6
Q ss_pred ceEEEEecccchHHH--HHHHHHcC----CCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMAC--TYSILTQG----IYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~i--a~~La~~~----l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~-eal~dADiV 249 (488)
+||+|||||++|++. ...++... ..++|+|+|++++++++...++++... .....+|+.|+|+ +||+|||||
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 699999999998763 33344432 246999999999999998888887643 2245789999998 689999999
Q ss_pred EEeccc-------------------ccCCCcchHhhH---------------hhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 250 IITAGV-------------------RSLVGETRLQLV---------------DRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 250 Iitag~-------------------~~k~G~~r~dll---------------~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
|++++. |+|+|++|.++. .+|++++.+++++|+++||+||+||+||
T Consensus 81 i~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~tN 160 (477)
T 3u95_A 81 INTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQTAN 160 (477)
T ss_dssp EECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 999863 457887766653 2589999999999999999999999999
Q ss_pred CchhHHHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccC--
Q psy12825 296 PVDVLTYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELN-- 372 (488)
Q Consensus 296 Pvdi~t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~-- 372 (488)
|++++|++++++++. |++|+ |+... ....+++.||+++++|+..+.| || +.||...+.+|+++...+
T Consensus 161 P~~i~t~a~~~~~~~---k~vGl-C~~~~--~~~~~~~~Lg~~~~~v~~~~~GlNH----~~w~~~~~~~G~D~~P~l~~ 230 (477)
T 3u95_A 161 PVFEITQAVRRWTGA---NIIGF-CHGVA--GVYEVFERLGLDPEEVDWQVAGVNH----GIWLNRFRYRGKDAYPLLDE 230 (477)
T ss_dssp CHHHHHHHHHHHHCC---CEEEE-CCGGG--HHHHHHHHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHH
T ss_pred hHHHHHHHHHHhCCC---CeEEE-CCCHH--HHHHHHHHhCCCHHHcEEEEeecCC----CeeeeeeeecCCcccHHHHH
Confidence 999999999998875 79999 88653 3456778899999999999999 88 777777777665432100
Q ss_pred ---------------------------------C--------CCCCCCChHH----------------HHHHHHHHhhhH
Q psy12825 373 ---------------------------------P--------TIGTEQDTEN----------------FVRLHADVVNSA 395 (488)
Q Consensus 373 ---------------------------------~--------~~~~~~~~~~----------------~~el~~~v~~~~ 395 (488)
| ++.+.+..+. +..+.+.++...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 310 (477)
T 3u95_A 231 WIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFHEHLRRAR 310 (477)
T ss_dssp HHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHHHHHHHHH
T ss_pred HHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 0 0000011110 001111111111
Q ss_pred -------HHHHHh--------c-----CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcC
Q psy12825 396 -------YEVIKL--------K-----GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMAD 454 (488)
Q Consensus 396 -------~eIi~~--------k-----g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk 454 (488)
.++.+. + +...| +..++++++||++|++.++.+||.|+|. .|||+|+++++||+|++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~a~~ii~AI~~~~~~~~~vNv~N~G~I~nLP~DavVEVpc~Vd~ 388 (477)
T 3u95_A 311 ERLIKLAEEVQENPHLKITEKHPEIFPKGRLS--GEQHIPFINAIANNKRVRLFLNVENQGALKDFPDDLVMELPVWVDS 388 (477)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCC--CCSHHHHHHHHHHCCCEEEEEEEECTTSSTTSCTTSEEEEEEEEET
T ss_pred HHHHHHHHHHhhccchhcccccchhccccccc--HHHHHHHHHHHhCCCCeEEEEEeecCcccCCCCCCcEEEEEEEEcC
Confidence 111111 0 11112 2346899999999999999999999998 79999999999999999
Q ss_pred CceEEEeccCCCHHHHHHH
Q psy12825 455 NGVTHIINQNLTPDEAEKL 473 (488)
Q Consensus 455 ~Gv~~i~~l~L~~~E~~~L 473 (488)
+|+.++...+++.....++
T Consensus 389 ~Gi~P~~vg~~p~~~~~l~ 407 (477)
T 3u95_A 389 SGIHREKVEPDLTHRIKIF 407 (477)
T ss_dssp TEEEECCCCSCCCHHHHHH
T ss_pred CCcccccCCCCCHHHHHHH
Confidence 9999987778887766654
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=125.76 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=106.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-------CCC-------CCCcEEEcCCc-
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-------PFL-------RSPKIESGSDI- 240 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-------~~~-------~~~~v~~ttd~- 240 (488)
...||+|||||.||+++|..++..|+ +|+|+|++++.++.....+.+.. ... ...++..++|+
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~ 82 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLA 82 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchH
Confidence 34699999999999999999999998 89999999987765433333211 011 12457788898
Q ss_pred cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE----
Q psy12825 241 AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI---- 316 (488)
Q Consensus 241 eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi---- 316 (488)
+++++||+||+++ .+|+++++++.++|++++|+. .|+.||.+.+...-+...+.. |+|++
T Consensus 83 ~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~-aIlaSNTSsl~is~ia~~~~~-p~r~ig~Hf 146 (319)
T 3ado_A 83 EAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDR-VVLSSSSSCLLPSKLFTGLAH-VKQCIVAHP 146 (319)
T ss_dssp HHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSS-SEEEECCSSCCHHHHHTTCTT-GGGEEEEEE
T ss_pred hHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhc-ceeehhhhhccchhhhhhccC-CCcEEEecC
Confidence 5799999999996 589999999999999998755 577999998544434333332 35555
Q ss_pred --------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 --------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 --------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|..++...-..+++.+|..|
T Consensus 147 fNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p 183 (319)
T 3ado_A 147 VNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP 183 (319)
T ss_dssp CSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence 45567777666777777777554
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=128.35 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=110.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-----------CCCCCCcEEEcCCcccc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-----------PFLRSPKIESGSDIAMS 243 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-----------~~~~~~~v~~ttd~eal 243 (488)
.+.+||+|||||.||.+||+.++..|+ +|+|+|++++.++.....+.... ......++..+++++++
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 391 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL 391 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGG
T ss_pred ccccEEEEEcccHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHH
Confidence 345799999999999999999999998 99999999987754333222110 11234577888899999
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE-------
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI------- 316 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi------- 316 (488)
++||+||+++ .+|+++++++.+++++++++. .|+.||.+.+-...+.+.+.. |+|++
T Consensus 392 ~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~-aIlASNTSsl~i~~ia~~~~~-p~r~ig~HFfnP 455 (742)
T 3zwc_A 392 STVDLVVEAV--------------FEDMNLKKKVFAELSALCKPG-AFLCTNTSALNVDDIASSTDR-PQLVIGTHFFSP 455 (742)
T ss_dssp GSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTT-CEEEECCSSSCHHHHHTTSSC-GGGEEEEECCSS
T ss_pred hhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCC-ceEEecCCcCChHHHHhhcCC-ccccccccccCC
Confidence 9999999996 589999999999999998655 578999998543333333333 35555
Q ss_pred -----------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -----------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -----------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|.-++...-..+++.+|..|
T Consensus 456 ~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~p 489 (742)
T 3zwc_A 456 AHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG 489 (742)
T ss_dssp TTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 44677777777777888888765
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-09 Score=112.00 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=97.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH-HHhhcC---CCC------CCCcEEEcCCccccC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML-DLQHGA---PFL------RSPKIESGSDIAMSE 244 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~-dL~~~~---~~~------~~~~v~~ttd~eal~ 244 (488)
.+.+||+|||+|.||.++|..|+..|+ +|+++|+++++...... .+.... ... ...++..++|+++++
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~ 129 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLS 129 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCT
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHc
Confidence 345799999999999999999999998 99999999884332111 111110 000 124677888999999
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-------
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI------- 316 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi------- 316 (488)
+||+||+++ .++..+++++.++|.+++++. .|++||.+.+ ++.+. +...- +.+++
T Consensus 130 ~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~-aIlasnTSsl~i~~ia-~~~~~-p~r~iG~HffnP 192 (460)
T 3k6j_A 130 NCDLIVESV--------------IEDMKLKKELFANLENICKST-CIFGTNTSSLDLNEIS-SVLRD-PSNLVGIHFFNP 192 (460)
T ss_dssp TCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTT-CEEEECCSSSCHHHHH-TTSSS-GGGEEEEECCSS
T ss_pred cCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCC-CEEEecCCChhHHHHH-HhccC-CcceEEEEecch
Confidence 999999996 367788899999999987544 2446787653 33332 22211 22333
Q ss_pred -----------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -----------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -----------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|.-+....-..+.+.+|..|
T Consensus 193 v~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~ 226 (460)
T 3k6j_A 193 ANVIRLVEIIYGSHTSSQAIATAFQACESIKKLP 226 (460)
T ss_dssp TTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEE
T ss_pred hhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEE
Confidence 33355666655666677777544
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-09 Score=112.71 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=99.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----CCCC---------CCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----PFLR---------SPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~~~~---------~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||.++|..|+..|+ +|+++|++++.++.....+.+.. .... ..++..++|+++
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA 81 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH
Confidence 45799999999999999999999997 89999999998876555443221 1000 125777889999
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE------
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI------ 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi------ 316 (488)
+++||+||+++ .++..+++++.+++.+++++. .|++||.+.+-...+.+...- +.+++
T Consensus 82 ~~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~-~IlasntSti~i~~ia~~~~~-p~~~ig~hf~~ 145 (483)
T 3mog_A 82 LAAADLVIEAA--------------SERLEVKKALFAQLAEVCPPQ-TLLTTNTSSISITAIAAEIKN-PERVAGLHFFN 145 (483)
T ss_dssp GGGCSEEEECC--------------CCCHHHHHHHHHHHHHHSCTT-CEEEECCSSSCHHHHTTTSSS-GGGEEEEEECS
T ss_pred hcCCCEEEEcC--------------CCcHHHHHHHHHHHHHhhccC-cEEEecCCCCCHHHHHHHccC-ccceEEeeecC
Confidence 99999999996 356778888999999887544 245677766432222222211 12222
Q ss_pred ------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 ------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 ------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|.-+....-..+++.+|..|
T Consensus 146 Pa~v~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~ 180 (483)
T 3mog_A 146 PAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQP 180 (483)
T ss_dssp STTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred hhhhCCeEEEecCCCCCHHHHHHHHHHHHHhCCEE
Confidence 33345666666667778887643
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-08 Score=105.11 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=96.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc----------CC-CCCCCcEEEcCCccc
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG----------AP-FLRSPKIESGSDIAM 242 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~----------~~-~~~~~~v~~ttd~ea 242 (488)
.++.+||+|||+|.||.++|..|+..|+ +|+++|++++.++.....+.+. .. .........++|+++
T Consensus 34 ~~~~~kV~VIGaG~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 111 (463)
T 1zcj_A 34 AQPVSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE 111 (463)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGG
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHH
Confidence 3456799999999999999999999987 8999999998776543322210 00 001112334678888
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG----- 317 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG----- 317 (488)
+++||+||+++ .++..+++++.+.+..++++.. |+++|.+.+-...+.+.... +.+++|
T Consensus 112 ~~~aDlVIeaV--------------pe~~~~k~~v~~~l~~~~~~~~-ii~snTs~~~~~~la~~~~~-~~~~ig~hf~~ 175 (463)
T 1zcj_A 112 LSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA-FLCTNTSALNVDDIASSTDR-PQLVIGTHFFS 175 (463)
T ss_dssp GTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC-EEEECCSSSCHHHHHTTSSC-GGGEEEEEECS
T ss_pred HCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCe-EEEeCCCCcCHHHHHHHhcC-CcceEEeecCC
Confidence 99999999996 2466778888888888875442 33568876433333333222 233443
Q ss_pred -------------ecCChHHHHHHHHHHHHhCCC
Q psy12825 318 -------------SGTNLDSMRFRVLLAQKLGLS 338 (488)
Q Consensus 318 -------------~gt~lds~R~~~~lA~~Lgv~ 338 (488)
..|.-+....-..+.+.+|..
T Consensus 176 P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~ 209 (463)
T 1zcj_A 176 PAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKI 209 (463)
T ss_dssp STTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred CcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence 245666655556666777653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-09 Score=102.89 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=77.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
-.+||+|||+|.||.++|..|+ .|+ +|+++|++++.++.....+.+. ...++..++|++++++||+||+++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~----~~~~i~~~~~~~~~~~aDlVieav-- 81 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEE----LLSKIEFTTTLEKVKDCDIVMEAV-- 81 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGG----GGGGEEEESSCTTGGGCSEEEECC--
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHH----HhCCeEEeCCHHHHcCCCEEEEcC--
Confidence 4579999999999999999999 888 9999999998887654442111 123677778887899999999996
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.++..+.+.+..+++.. |++++ ++|.+.
T Consensus 82 ------------pe~~~vk~~l~~~l~~~-~~~Il--asntSt 109 (293)
T 1zej_A 82 ------------FEDLNTKVEVLREVERL-TNAPL--CSNTSV 109 (293)
T ss_dssp ------------CSCHHHHHHHHHHHHTT-CCSCE--EECCSS
T ss_pred ------------cCCHHHHHHHHHHHhcC-CCCEE--EEECCC
Confidence 46777888888889988 88744 567654
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=112.80 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=100.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc----CCC---------CCCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG----APF---------LRSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~----~~~---------~~~~~v~~ttd~ea 242 (488)
+.+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.+. ... ....++..++|+++
T Consensus 311 ~~~kV~VIGaG~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~ 388 (725)
T 2wtb_A 311 KIKKVAIIGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYES 388 (725)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGG
T ss_pred cCcEEEEEcCCHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHH
Confidence 45689999999999999999999987 8999999998776533322221 110 01346788889999
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcEE-----
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRVI----- 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rVi----- 316 (488)
+++||+||+++ .++..+++++..++.+++++. .|++||.+.+ ++.+. +.... +++++
T Consensus 389 ~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~-~IlasntStl~i~~la-~~~~~-p~~~iG~hf~ 451 (725)
T 2wtb_A 389 FRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQH-CILASNTSTIDLNKIG-ERTKS-QDRIVGAHFF 451 (725)
T ss_dssp GTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTT-CEEEECCSSSCHHHHT-TTCSC-TTTEEEEEEC
T ss_pred HCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCHHHHH-HHhcC-CCCEEEecCC
Confidence 99999999996 466778888999999987654 2457888764 33332 22222 12333
Q ss_pred -------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 -------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 -------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|..++...-..+.+.+|..|
T Consensus 452 ~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~ 487 (725)
T 2wtb_A 452 SPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTP 487 (725)
T ss_dssp SSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEE
Confidence 33356666666667777887543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-09 Score=103.96 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=76.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC--------CC------CCCcEEEcCCcc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP--------FL------RSPKIESGSDIA 241 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~--------~~------~~~~v~~ttd~e 241 (488)
+.+||+|||+|.||..+|..++..|. +|+++|+++++++.....+.+... .. ...++..++|++
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 80 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLA 80 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHH
Confidence 45799999999999999999999997 999999999988765554322100 00 012355677884
Q ss_pred -ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 242 -MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
++++||+||+++ ..+.++.+++.+++..++++.. |+++|.+.
T Consensus 81 ~~~~~aDlVi~av--------------~~~~~~~~~v~~~l~~~~~~~~-il~s~tS~ 123 (283)
T 4e12_A 81 QAVKDADLVIEAV--------------PESLDLKRDIYTKLGELAPAKT-IFATNSST 123 (283)
T ss_dssp HHTTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC-EEEECCSS
T ss_pred HHhccCCEEEEec--------------cCcHHHHHHHHHHHHhhCCCCc-EEEECCCC
Confidence 689999999996 3556678888888888865432 34556544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=101.24 Aligned_cols=106 Identities=20% Similarity=0.322 Sum_probs=75.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc------CCCCC------------CCcEEEc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG------APFLR------------SPKIESG 237 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~------~~~~~------------~~~v~~t 237 (488)
+++||+|||+|.||.++|..|+..|. +|+++|+++++++.....+.+. ..... ..++..+
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~ 91 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 91 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence 35689999999999999999999987 9999999998876543222110 00000 1246777
Q ss_pred CCcc-ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEEEeCCchh
Q psy12825 238 SDIA-MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLIISNPVDV 299 (488)
Q Consensus 238 td~e-al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv~TNPvdi 299 (488)
+|++ ++++||+||+++ ..+..+.+++.+.+..+++ +. |+++|...+
T Consensus 92 ~~~~~~~~~aD~Vi~av--------------p~~~~~~~~v~~~l~~~~~~~~--iv~s~ts~i 139 (302)
T 1f0y_A 92 TDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHT--IFASNTSSL 139 (302)
T ss_dssp SCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTC--EEEECCSSS
T ss_pred cCHHHhhcCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe--EEEECCCCC
Confidence 8885 899999999996 3455667788888888765 55 335666543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-08 Score=109.53 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=97.8
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc----CCCCC---------CCcEEEcCCc
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG----APFLR---------SPKIESGSDI 240 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~----~~~~~---------~~~v~~ttd~ 240 (488)
..+.+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+.+. ..... ..+++.++|+
T Consensus 311 ~~~i~kV~VIGaG~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~ 388 (715)
T 1wdk_A 311 AKDVKQAAVLGAGIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY 388 (715)
T ss_dssp CCCCSSEEEECCHHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS
T ss_pred cccCCEEEEECCChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH
Confidence 3456789999999999999999999998 8999999998776432222211 10000 1247778889
Q ss_pred cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcC----------
Q psy12825 241 AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSG---------- 309 (488)
Q Consensus 241 eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg---------- 309 (488)
+++++||+||+++ .++..+++++...+.+++++. .|++||.+.+ ++.+. +...
T Consensus 389 ~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~-~IlasntStl~i~~la-~~~~~~~~~ig~hf 452 (715)
T 1wdk_A 389 GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVRED-AILASNTSTISISLLA-KALKRPENFVGMHF 452 (715)
T ss_dssp TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTT-CEEEECCSSSCHHHHG-GGCSCGGGEEEEEC
T ss_pred HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCC-eEEEeCCCCCCHHHHH-HHhcCccceEEEEc
Confidence 8999999999996 366778888999999987544 2457887653 33332 2221
Q ss_pred C-CCCc------EEeecCChHHHHHHHHHHHHhCCC
Q psy12825 310 F-PKNR------VIGSGTNLDSMRFRVLLAQKLGLS 338 (488)
Q Consensus 310 ~-p~~r------ViG~gt~lds~R~~~~lA~~Lgv~ 338 (488)
+ |+.. +.|-.|.-+....-..+.+.+|..
T Consensus 453 ~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~ 488 (715)
T 1wdk_A 453 FNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKN 488 (715)
T ss_dssp CSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred cCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCE
Confidence 1 1111 234445666665566667777754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-07 Score=98.13 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=80.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC---------CCcEEEcCCc-cccCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR---------SPKIESGSDI-AMSEG 245 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~---------~~~v~~ttd~-eal~d 245 (488)
+++||+|||+|.||..+|..|+..+...+|+++|+++++++.+........ ... ..++..++|+ +++++
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~-e~gl~~~~~~~~~~~l~~t~~~~~~~~~ 86 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIY-EPGLDEIVFAARGRNLFFSSDIPKAIAE 86 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSC-CTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcC-CCCHHHHHHHhhcCCEEEECCHHHHhhc
Confidence 457999999999999999999998543489999999988775432110000 000 1247778887 67999
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEE-eCCchh
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLII-SNPVDV 299 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~-TNPvdi 299 (488)
||+||++++.|.+.+.++.+ -..++..+.+.++.|.++. |+.+||.. |+|++.
T Consensus 87 aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt 141 (481)
T 2o3j_A 87 ADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKA 141 (481)
T ss_dssp CSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred CCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCH
Confidence 99999998877654322222 1123345566667777764 45544433 677764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=88.86 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=81.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---CCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---PFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.++||+|||+|.+|.+++..|+..|. +|.++|++++.++.+...-.... ......++..++|+ +++++||+||+
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVil 105 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILI 105 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEE
T ss_pred cCCeEEEECccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEE
Confidence 45799999999999999999999886 89999999887765443321110 01123457778888 57999999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCch----hHHHHHHHhc
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVD----VLTYISWKLS 308 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvd----i~t~~~~k~s 308 (488)
++. ...++++++.+..+. |+.++|.++|-.+ .+.+++.+..
T Consensus 106 aVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l 151 (356)
T 3k96_A 106 VVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATEL 151 (356)
T ss_dssp CCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHH
T ss_pred CCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHc
Confidence 962 125677788888874 5777787777544 2345555543
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=92.83 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=75.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChh----HHHHHHHHHhhcC-CCC----------CCCcEEEcC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNED----RCKGEMLDLQHGA-PFL----------RSPKIESGS 238 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e----~l~g~~~dL~~~~-~~~----------~~~~v~~tt 238 (488)
++.+||+|||+|.||..+|..|+.. |.. +|+++|++++ +++.+........ ..+ ...++..++
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~tt 94 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTP 94 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEES
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeC
Confidence 3567999999999999999999999 753 8999999998 6554322110000 000 035688888
Q ss_pred CccccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe
Q psy12825 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS 294 (488)
Q Consensus 239 d~eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T 294 (488)
|.+++++||+||++++.+.....++ ..++..+...++.|.++. |..++|+-|
T Consensus 95 d~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~S 147 (478)
T 3g79_A 95 DFSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLES 147 (478)
T ss_dssp CGGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred cHHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 8889999999999987765432210 123344555566666653 555554443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=83.02 Aligned_cols=95 Identities=14% Similarity=0.203 Sum_probs=70.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEE-EeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCL-IDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L-~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
+++||+|||+|.||..++..|+..+. +|.+ +|+++++++....++.. .. ..++.++++++|+||++..
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g~--------~~-~~~~~~~~~~aDvVilavp 90 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFGA--------SV-KAVELKDALQADVVILAVP 90 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHTT--------TE-EECCHHHHTTSSEEEEESC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhCC--------Cc-ccChHHHHhcCCEEEEeCC
Confidence 46799999999999999999998886 7888 99999888765544421 22 2345577899999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
+ ..+.++++.+.. .++.++|.++||..
T Consensus 91 ----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 91 ----Y------------DSIADIVTQVSD-WGGQIVVDASNAID 117 (220)
T ss_dssp ----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred ----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence 1 134455555655 46778888899985
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=91.29 Aligned_cols=121 Identities=18% Similarity=0.193 Sum_probs=76.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH--------HhhcCCCCCCCcEEEcCCc-cccCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD--------LQHGAPFLRSPKIESGSDI-AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d--------L~~~~~~~~~~~v~~ttd~-eal~d 245 (488)
++.+||+|||+|.||..+|..|+. +. +|+++|+++++++.+... +.+... ....++..++|+ +++++
T Consensus 34 ~~~mkIaVIGlG~mG~~lA~~La~-G~--~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~-~~~~~l~~ttd~~ea~~~ 109 (432)
T 3pid_A 34 SEFMKITISGTGYVGLSNGVLIAQ-NH--EVVALDIVQAKVDMLNQKISPIVDKEIQEYLA-EKPLNFRATTDKHDAYRN 109 (432)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHT-TS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHH-HSCCCEEEESCHHHHHTT
T ss_pred cCCCEEEEECcCHHHHHHHHHHHc-CC--eEEEEecCHHHhhHHhccCCccccccHHHHHh-hccCCeEEEcCHHHHHhC
Confidence 456799999999999999998887 65 999999999887754331 111000 002367888897 68999
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCchhHHHHH
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVDVLTYIS 304 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvdi~t~~~ 304 (488)
||+||+++..+..+.... -++..+.+.++.|.+..|..++|+- |.|.+..-.+.
T Consensus 110 aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l~ 164 (432)
T 3pid_A 110 ADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIK 164 (432)
T ss_dssp CSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHHH
T ss_pred CCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHHH
Confidence 999999975443221111 1223344444444445567766554 46666544443
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-06 Score=90.53 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=77.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC----------CCcEEEcCCcc-ccCCC
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR----------SPKIESGSDIA-MSEGS 246 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~----------~~~v~~ttd~e-al~dA 246 (488)
|||+|||+|.||..+|..|+..|. +|+++|+++++++.......... .+. ..++..++|++ ++++|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~--~V~~~D~~~~~v~~l~~g~~~i~-e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a 79 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA--NVRCIDTDRNKIEQLNSGTIPIY-EPGLEKMIARNVKAGRLRFGTEIEQAVPEA 79 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTCSCCC-STTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHcCCCccc-CCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence 799999999999999999999987 99999999988876543211110 000 34577888985 69999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe-CCch
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS-NPVD 298 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T-NPvd 298 (488)
|+||++++.+..+.. ..++..+.++++.|.++. ++.+||..| -|.+
T Consensus 80 DvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg 127 (450)
T 3gg2_A 80 DIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVG 127 (450)
T ss_dssp SEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred CEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCc
Confidence 999999877654322 233456666677777664 555555544 3443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-06 Score=89.19 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=74.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC----------CCcEEEcCCcc-ccCCC
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR----------SPKIESGSDIA-MSEGS 246 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~----------~~~v~~ttd~e-al~dA 246 (488)
|||+|||+|.||..++..|+..|. +|+++|+++++++.......... .+. ..++..++|++ ++++|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~--~V~~~d~~~~~~~~l~~~~~~i~-e~~l~~~~~~~~~~g~l~~t~~~~~~~~~a 77 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIV-EPGLEALLQQGRQTGRLSGTTDFKKAVLDS 77 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSC-CTTHHHHHHHHHHTTCEEEESCHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHhCCCCCcC-CCCHHHHHHhhcccCceEEeCCHHHHhccC
Confidence 589999999999999999999887 89999999988765432110000 000 23577788884 79999
Q ss_pred cEEEEecccccCC-CcchHhhHhhhHHHHHHHHHHHhcc-CC---CcEEEEE-eCCchh
Q psy12825 247 RIVIITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKG-SP---DCILLII-SNPVDV 299 (488)
Q Consensus 247 DiVIitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~-~p---~a~vIv~-TNPvdi 299 (488)
|+||+++..+... |. -++..+.+.++.|.++ .| +.++++. |+|.+.
T Consensus 78 DvviiaVptp~~~~~~-------~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~ 129 (436)
T 1mv8_A 78 DVSFICVGTPSKKNGD-------LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT 129 (436)
T ss_dssp SEEEECCCCCBCTTSS-------BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred CEEEEEcCCCcccCCC-------cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence 9999998766432 22 1223344444555544 34 5666555 678765
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.19 E-value=8e-06 Score=82.03 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=79.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC--CCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP--FLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~--~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.++||+|||+|.+|..++..|+..|. +|.++ .+++.++....+-..... ......+..++|.+++.++|+||+++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~--~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav 94 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGH--EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGADLVLFCV 94 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTC--EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGGTTCSEEEECC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCC--eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCEEEEEc
Confidence 57899999999999999999999886 89999 888777654332111100 00112334566777789999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
... .++++.+.|..+ .|+.+++.++|..+... .+.+. +| +++++
T Consensus 95 k~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-~l~~~--~~-~~vl~ 139 (318)
T 3hwr_A 95 KST----------------DTQSAALAMKPALAKSALVLSLQNGVENAD-TLRSL--LE-QEVAA 139 (318)
T ss_dssp CGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHH-HHHHH--CC-SEEEE
T ss_pred ccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHH-HHHHH--cC-CcEEE
Confidence 211 235666777776 56788888999987653 33333 34 55653
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-06 Score=87.30 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=77.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-----C--CCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-----F--LRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-----~--~~~~~v~~ttd~-eal~dADiV 249 (488)
|||+|||+|.||..++..|+. +. +|+++|+++++++.......+... + ....++..++|+ +++++||+|
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~--~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvv 77 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELV 77 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CC--EEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEE
Confidence 589999999999999999987 64 899999999877654221110000 0 002356677787 678999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEE-EeCCchhHHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI-ISNPVDVLTYISWK 306 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv-~TNPvdi~t~~~~k 306 (488)
|+++..+...+..+.| +..+.++++.|.+..|+.+||. .|||.+....+...
T Consensus 78 iiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~ 130 (402)
T 1dlj_A 78 IIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQK 130 (402)
T ss_dssp EECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHH
T ss_pred EEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHH
Confidence 9998665322221222 1233444444444456676665 68999876655443
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.9e-06 Score=89.36 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC----------CCcEEEcCCc-cc
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR----------SPKIESGSDI-AM 242 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~----------~~~v~~ttd~-ea 242 (488)
..-.|||+|||+|.||..+|..|+..|. +|+++|+++++++.+........ .+. ..++..++|+ ++
T Consensus 5 ~~~~~~I~VIG~G~vG~~lA~~la~~G~--~V~~~d~~~~~v~~l~~~~~~i~-e~gl~~~l~~~~~~~~l~~ttd~~~a 81 (478)
T 2y0c_A 5 HHGSMNLTIIGSGSVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIH-EPGLKEVIARNRSAGRLRFSTDIEAA 81 (478)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSC-CTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred cCCCceEEEECcCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHCCCCCcC-CCCHHHHHHHhcccCCEEEECCHHHH
Confidence 3457899999999999999999999987 89999999987775433211110 001 2357888898 57
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T 294 (488)
+++||+||+++..|.+... .-++..+.++++.|.++. |+.+|++.|
T Consensus 82 ~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 82 VAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp HHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred hhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 9999999999877653221 123345666666776664 455554443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.9e-06 Score=82.11 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=64.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhH--HHHH--------HHHHhhcCCCCCCCcEEEcCCccc
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDR--CKGE--------MLDLQHGAPFLRSPKIESGSDIAM 242 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~--l~g~--------~~dL~~~~~~~~~~~v~~ttd~ea 242 (488)
.....+||+|||+|.||.+++..|+..+. +|+++|+++++ .+.. ..++.... ..+..++..++
T Consensus 15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~ 87 (245)
T 3dtt_A 15 LYFQGMKIAVLGTGTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH-----PHVHLAAFADV 87 (245)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS-----TTCEEEEHHHH
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc-----CceeccCHHHH
Confidence 45567899999999999999999999887 89999999875 1100 12222111 12222223367
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
+++||+||++.... ...+.+.++. ....++.++|.++||.+
T Consensus 88 ~~~aDvVilavp~~------------~~~~~~~~i~---~~~l~g~ivi~~s~~~~ 128 (245)
T 3dtt_A 88 AAGAELVVNATEGA------------SSIAALTAAG---AENLAGKILVDIANPLD 128 (245)
T ss_dssp HHHCSEEEECSCGG------------GHHHHHHHHC---HHHHTTSEEEECCCCEE
T ss_pred HhcCCEEEEccCcH------------HHHHHHHHhh---hhhcCCCEEEECCCCCC
Confidence 89999999996211 1122333331 11226788999999874
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=98.14 E-value=7.1e-06 Score=86.48 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=80.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCc-cccC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDI-AMSE 244 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~-eal~ 244 (488)
.++.+|+|||.|.||..+|..|+..|+ +|+-+|+|+++.+.+.....+... .....++.+++|+ ++++
T Consensus 19 ~~m~~IaViGlGYVGLp~A~~~A~~G~--~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~ 96 (444)
T 3vtf_A 19 SHMASLSVLGLGYVGVVHAVGFALLGH--RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVA 96 (444)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHH
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHh
Confidence 356799999999999999999999998 999999999887754321111100 0024578888887 5799
Q ss_pred CCcEEEEecccccCCC-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCch
Q psy12825 245 GSRIVIITAGVRSLVG-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVD 298 (488)
Q Consensus 245 dADiVIitag~~~k~G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvd 298 (488)
+||++|++++.|..+. ...+..+ ....+.+++.++...+..+||+= |-|+.
T Consensus 97 ~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppG 149 (444)
T 3vtf_A 97 ATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPG 149 (444)
T ss_dssp TSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTT
T ss_pred cCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCc
Confidence 9999999998886543 2222222 23456666666655555544443 45655
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.5e-06 Score=81.95 Aligned_cols=98 Identities=11% Similarity=0.193 Sum_probs=67.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
|+.+||+|||+|.||.+++..|+..++ ..+|.++|+++++++.....+ .+..++|. +++++||+||++
T Consensus 1 M~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~----------gi~~~~~~~~~~~~aDvVila 70 (280)
T 3tri_A 1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC----------GVHTTQDNRQGALNADVVVLA 70 (280)
T ss_dssp -CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT----------CCEEESCHHHHHSSCSEEEEC
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc----------CCEEeCChHHHHhcCCeEEEE
Confidence 346899999999999999999999885 458999999998776543221 12344554 678999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc--CCCcEEEEEeCCch
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG--SPDCILLIISNPVD 298 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~--~p~a~vIv~TNPvd 298 (488)
+ +| ..+.++.+.|..+ .++.++|.+++...
T Consensus 71 v----~p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~ 102 (280)
T 3tri_A 71 V----KP------------HQIKMVCEELKDILSETKILVISLAVGVT 102 (280)
T ss_dssp S----CG------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred e----CH------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence 7 21 1344555556554 35556665555554
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=79.62 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC--CCcEEEcCC--c-cccCCCcEEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR--SPKIESGSD--I-AMSEGSRIVII 251 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~--~~~v~~ttd--~-eal~dADiVIi 251 (488)
++||+|||+|.||..++..|+..|. +|.++|+++++++.....-........ ..++..+++ . ++++++|+||+
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGN--DVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEE
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEE
Confidence 5799999999999999999998886 899999998877654332101000000 001111222 2 23459999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchh
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDV 299 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi 299 (488)
+... ....++.+.+..+ .|+.+++.++|..+.
T Consensus 81 ~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 81 LTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp CSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred Eecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 9621 1246666777776 467778888887764
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-05 Score=75.75 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|+++||+|||+|.||..++..|...+...+|.++|+++++++... +. . ... ..++++ +.+++||+||+++
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-~~--g----~~~--~~~~~~~~~~~~aDvVilav 74 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-ER--G----IVD--EATADFKVFAALADVIILAV 74 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HT--T----SCS--EEESCTTTTGGGCSEEEECS
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-Hc--C----Ccc--cccCCHHHhhcCCCEEEEcC
Confidence 456899999999999999999988754458999999988765421 11 1 011 234566 4688999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc--CCCcEEEEEeCCc
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG--SPDCILLIISNPV 297 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~--~p~a~vIv~TNPv 297 (488)
.. ....++.+.+..+ .|+.+++.++|..
T Consensus 75 p~----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~~ 104 (290)
T 3b1f_A 75 PI----------------KKTIDFIKILADLDLKEDVIITDAGSTK 104 (290)
T ss_dssp CH----------------HHHHHHHHHHHTSCCCTTCEEECCCSCH
T ss_pred CH----------------HHHHHHHHHHHhcCCCCCCEEEECCCCc
Confidence 21 1235566666665 4667666666643
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.1e-06 Score=87.16 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=78.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC----------CCCcEEEcCCc-ccc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL----------RSPKIESGSDI-AMS 243 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~----------~~~~v~~ttd~-eal 243 (488)
.-..+|+|||+|.||..+|..|+..|. +|++||+++++++.+........ .+ ...++..++|+ +++
T Consensus 6 ~~~~~~~vIGlG~vG~~~A~~La~~G~--~V~~~D~~~~kv~~l~~g~~~~~-epgl~~~~~~~~~~g~l~~ttd~~ea~ 82 (446)
T 4a7p_A 6 HGSVRIAMIGTGYVGLVSGACFSDFGH--EVVCVDKDARKIELLHQNVMPIY-EPGLDALVASNVKAGRLSFTTDLAEGV 82 (446)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHTTTCCSSC-CTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHhcCCCCcc-CCCHHHHHHhhcccCCEEEECCHHHHH
Confidence 345799999999999999999999997 99999999988775433211100 00 02467888998 689
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEe-CCch
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIIS-NPVD 298 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~T-NPvd 298 (488)
++||+||++++.|...+.. .-++..+++.++.|.++. +..++|..| -|.+
T Consensus 83 ~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg 134 (446)
T 4a7p_A 83 KDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVG 134 (446)
T ss_dssp TTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTT
T ss_pred hcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCch
Confidence 9999999998777542111 123345666666776653 556555554 3443
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=9.7e-06 Score=81.99 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCC-----CCeEEEEeCChh-----HHHHHHHHHhhcCCC---CCCCcEEEcCCc-
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGI-----YSNFCLIDSNED-----RCKGEMLDLQHGAPF---LRSPKIESGSDI- 240 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l-----~~el~L~Di~~e-----~l~g~~~dL~~~~~~---~~~~~v~~ttd~- 240 (488)
|.++||+|||+|.||..++..|+..+. ..+|.++|++++ .++.....-...... .....+..++|+
T Consensus 6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
T 1x0v_A 6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV 85 (354)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence 445799999999999999999998771 138999999887 665433221111000 012346667777
Q ss_pred cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCc
Q psy12825 241 AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPV 297 (488)
Q Consensus 241 eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPv 297 (488)
+++++||+||+++.. ..+.++.+.|..+. |+.+++..+|-.
T Consensus 86 ~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi 127 (354)
T 1x0v_A 86 QAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGV 127 (354)
T ss_dssp HHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCB
T ss_pred HHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCcc
Confidence 568999999999621 13456667777764 677788888744
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-05 Score=76.32 Aligned_cols=93 Identities=15% Similarity=0.364 Sum_probs=66.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+++||+|||+|.||..++..|...+. + +.++|+++++++.....+ .+..++++ +.++++|+||++.
T Consensus 9 ~~m~i~iiG~G~mG~~~a~~l~~~g~--~~v~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 9 EDTPIVLIGAGNLATNLAKALYRKGF--RIVQVYSRTEESARELAQKV----------EAEYTTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHHTC--CEEEEECSSHHHHHHHHHHT----------TCEEESCGGGSCSCCSEEEECC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHc----------CCceeCCHHHHhcCCCEEEEec
Confidence 35799999999999999999988875 5 899999988776543322 12234566 5678999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCC
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNP 296 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNP 296 (488)
. .+ ...++++.+.... |+.+++..++-
T Consensus 77 ~--------------~~--~~~~v~~~l~~~~~~~~ivv~~s~~ 104 (266)
T 3d1l_A 77 K--------------DS--AFAELLQGIVEGKREEALMVHTAGS 104 (266)
T ss_dssp C--------------HH--HHHHHHHHHHTTCCTTCEEEECCTT
T ss_pred C--------------HH--HHHHHHHHHHhhcCCCcEEEECCCC
Confidence 2 11 2356666776664 67777777763
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.9e-06 Score=84.81 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=69.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH-HhhcCC-CCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD-LQHGAP-FLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d-L~~~~~-~~~~~~v~~ttd~eal~dADiVIita 253 (488)
+.+||+|||+|.||..++..|+..+. +|.++|++ +.++..... +.-... .....++..++|++++.++|+||+++
T Consensus 2 ~~mkI~IiGaG~~G~~~a~~L~~~g~--~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vilav 78 (335)
T 3ghy_A 2 SLTRICIVGAGAVGGYLGARLALAGE--AINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVVIVAV 78 (335)
T ss_dssp CCCCEEEESCCHHHHHHHHHHHHTTC--CEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHHCCCSEEEECC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC--EEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHcCCCCEEEEeC
Confidence 46899999999999999999999886 89999985 444322110 000000 00011234456777789999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCc
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPV 297 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPv 297 (488)
. ...+.++.+.|..+ .|+.+|+.+.|..
T Consensus 79 k----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 79 K----------------APALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp C----------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred C----------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 2 12345667777776 5788888889985
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-05 Score=74.01 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=57.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
...+||+|||+|.||..++..|+..+. +|.++|++++ ++++||+||++..
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~g~--~V~~~~~~~~----------------------------~~~~aD~vi~av~ 66 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIAGH--EVTYYGSKDQ----------------------------ATTLGEIVIMAVP 66 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTC--EEEEECTTCC----------------------------CSSCCSEEEECSC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHH----------------------------HhccCCEEEEcCC
Confidence 457899999999999999999998886 8999998765 4679999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
...++++.+.+..+.++.+++.++|+.+
T Consensus 67 ----------------~~~~~~v~~~l~~~~~~~~vi~~~~g~~ 94 (209)
T 2raf_A 67 ----------------YPALAALAKQYATQLKGKIVVDITNPLN 94 (209)
T ss_dssp ----------------HHHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred ----------------cHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 1123444444544333778888899654
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=83.92 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=76.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH-----------HhhcCCCCCCCcEEEcCCc-ccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD-----------LQHGAPFLRSPKIESGSDI-AMS 243 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d-----------L~~~~~~~~~~~v~~ttd~-eal 243 (488)
+++||+|||+|.||..++..|+..+...+|+++|+++++++..... +.... ....+..++|+ +++
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~---~~~~~~~t~~~~e~~ 80 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESC---RGKNLFFSTNIDDAI 80 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH---BTTTEEEESCHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHh---hcCCEEEECCHHHHH
Confidence 3579999999999999999999884333899999999877653211 10000 01246677887 578
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEE-eCCchh
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLII-SNPVDV 299 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~-TNPvdi 299 (488)
++||+||+++..|........+ -..++..+.+.++.|.++ .|+.++|+. |+|...
T Consensus 81 ~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~ 137 (467)
T 2q3e_A 81 KEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA 137 (467)
T ss_dssp HHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred hcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence 9999999998665432110000 012344566667777665 455555554 567654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.9e-05 Score=81.00 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=71.9
Q ss_pred CceEEEEecccchHHHHHHHHHcC-----CCCeEEEEeCChh-----HHHHHHHHHhhcCCC---CCCCcEEEcCCc-cc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQG-----IYSNFCLIDSNED-----RCKGEMLDLQHGAPF---LRSPKIESGSDI-AM 242 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~-----l~~el~L~Di~~e-----~l~g~~~dL~~~~~~---~~~~~v~~ttd~-ea 242 (488)
++||+|||+|.||..++..|+..| +..+|.++|++++ +++.+...-...... .....+..++|+ ++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 368999999999999999998877 1138999999887 555433221111000 012356777787 56
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc----c-CCCcEEEEEeCCc
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK----G-SPDCILLIISNPV 297 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~----~-~p~a~vIv~TNPv 297 (488)
+++||+||+++. ...+.++++.|.. + .|+.++|..+|..
T Consensus 101 ~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 101 INDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp HTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred HcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 899999999962 1356777778876 5 4677788777753
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-05 Score=80.09 Aligned_cols=105 Identities=12% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC-CCcEEEcCCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESGSDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~-~~~v~~ttd~eal~dADiVIi 251 (488)
+..-++||+|||+|.||..++..|+..|. +|.++|+++++++.+..+-... ..+. ...+..++++++++++|+||+
T Consensus 10 ~~~~~~kI~iIG~G~mG~ala~~L~~~G~--~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~aDvVil 86 (335)
T 1z82_A 10 HHHMEMRFFVLGAGSWGTVFAQMLHENGE--EVILWARRKEIVDLINVSHTSP-YVEESKITVRATNDLEEIKKEDILVI 86 (335)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHSCBT-TBTTCCCCSEEESCGGGCCTTEEEEE
T ss_pred ccccCCcEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCCcc-cCCCCeeeEEEeCCHHHhcCCCEEEE
Confidence 33456899999999999999999999886 8999999988776543331110 0000 003455667755889999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
+... ..+.+++..+.. ++.++|.++|..+
T Consensus 87 ~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~ 115 (335)
T 1z82_A 87 AIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIE 115 (335)
T ss_dssp CSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred ECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCC
Confidence 9621 123444444444 6778888888643
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.8e-05 Score=77.13 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=52.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.+||+|||+|.||..++..|+..|. +|+++|+++++++.. .+. .+..++++ +++++||+||++.
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~l----~~~-------g~~~~~~~~e~~~~aDvVi~~v 95 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEAGY--ALQVWNRTPARAASL----AAL-------GATIHEQARAAARDADIVVSML 95 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHTTC--EEEEECSCHHHHHHH----HTT-------TCEEESSHHHHHTTCSEEEECC
T ss_pred cCCCEEEEECccHHHHHHHHHHHhCCC--eEEEEcCCHHHHHHH----HHC-------CCEeeCCHHHHHhcCCEEEEEC
Confidence 356799999999999999999999887 899999999876543 221 13345666 5689999999996
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.1e-05 Score=77.51 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=51.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||+|.||..++..|+..|. +|+++|+++++++.... . .+..++++ +++++||+||++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~~~~----~-------g~~~~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGC--SVTIWNRSPEKAEELAA----L-------GAERAATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSGGGGHHHHH----T-------TCEECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHHH----C-------CCeecCCHHHHHhcCCEEEEEc
Confidence 799999999999999999999986 89999999987764321 1 23445666 5688999999996
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-05 Score=81.47 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=68.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC---CCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF---LRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~---~~~~~v~~ttd~-eal~dADiVIi 251 (488)
+++||+|||+|.||..++..|+..|. +|.++|+++++++............ .....+..++|+ +++++||+||+
T Consensus 14 ~M~kI~iIG~G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVil 91 (366)
T 1evy_A 14 YLNKAVVFGSGAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILF 91 (366)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEE
T ss_pred ccCeEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEE
Confidence 33499999999999999999988776 8999999988776543332111100 012246666777 46899999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHH----Hhcc-CC-CcEEEEEeCCch
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPK----IAKG-SP-DCILLIISNPVD 298 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~----I~~~-~p-~a~vIv~TNPvd 298 (488)
+... ..+.+++.. |..+ .| +.++|.++|..+
T Consensus 92 av~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~ 128 (366)
T 1evy_A 92 VIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE 128 (366)
T ss_dssp CCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred CCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence 9621 123344444 4433 34 667777887543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.7e-05 Score=76.65 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=51.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||+|||+|.||..++..|+..|. +|+++|+++++++..... .+..++++ +.+++||+||++.
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~~~~~-----------g~~~~~~~~~~~~~advvi~~v 65 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGF--DVTVWNRNPAKCAPLVAL-----------GARQASSPAEVCAACDITIAML 65 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTC--CEEEECSSGGGGHHHHHH-----------TCEECSCHHHHHHHCSEEEECC
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHHHC-----------CCeecCCHHHHHHcCCEEEEEc
Confidence 4689999999999999999999886 899999999877653321 12345566 5678999999996
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.5e-05 Score=82.08 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=70.1
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCC---CcE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEG---SRI 248 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~d---ADi 248 (488)
+.++++||+|||+|.||..++..|+..|. +|.++|+++++++....... ...+..+++++ .+++ +|+
T Consensus 11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~--~V~v~~r~~~~~~~l~~~~~-------~~gi~~~~s~~e~v~~l~~aDv 81 (480)
T 2zyd_A 11 HHMSKQQIGVVGMAVMGRNLALNIESRGY--TVSIFNRSREKTEEVIAENP-------GKKLVPYYTVKEFVESLETPRR 81 (480)
T ss_dssp ----CBSEEEECCSHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHST-------TSCEEECSSHHHHHHTBCSSCE
T ss_pred cccCCCeEEEEccHHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHhhCC-------CCCeEEeCCHHHHHhCCCCCCE
Confidence 66788999999999999999999999887 89999999987765433221 12355666763 3444 999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
||+++. ++. .++++.+.+..+ .|+.+||..+|-..
T Consensus 82 Vil~Vp----~~~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~ 117 (480)
T 2zyd_A 82 ILLMVK----AGA-----------GTDAAIDSLKPYLDKGDIIIDGGNTFF 117 (480)
T ss_dssp EEECSC----SSS-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred EEEECC----CHH-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 999972 211 234445566665 46778888888764
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=6.1e-05 Score=75.68 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCC--CeEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIY--SNFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRI 248 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~--~el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADi 248 (488)
.++++||+|||+|.||..++..|+..|.. .+|.++|++++ +++... .. .+..+++. +++++||+
T Consensus 19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~----~~-------G~~~~~~~~e~~~~aDv 87 (322)
T 2izz_A 19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR----KM-------GVKLTPHNKETVQHSDV 87 (322)
T ss_dssp ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH----HH-------TCEEESCHHHHHHHCSE
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH----Hc-------CCEEeCChHHHhccCCE
Confidence 34567999999999999999999988831 38999999875 554432 11 12234454 56889999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
||+++. + ..+.++...+..+ .|+.++|.++|...
T Consensus 88 Vilav~----~------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 88 LFLAVK----P------------HIIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp EEECSC----G------------GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred EEEEeC----H------------HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 999972 1 1345555666665 46777888888765
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=77.66 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=67.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCC--CeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIY--SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~--~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
|+++||+|||+|.||..++..|+..+.. .+|.++|+++++ . .+..++++ +.+++||+||+
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~---------~--------g~~~~~~~~~~~~~~D~vi~ 64 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN---------T--------TLNYMSSNEELARHCDIIVC 64 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS---------S--------SSEECSCHHHHHHHCSEEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc---------C--------ceEEeCCHHHHHhcCCEEEE
Confidence 3467999999999999999999888731 389999998765 1 12234565 56789999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
++. +. .+.++.+.+..+.++..++..+|..+.
T Consensus 65 ~v~----~~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 65 AVK----PD------------IAGSVLNNIKPYLSSKLLISICGGLNI 96 (262)
T ss_dssp CSC----TT------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred EeC----HH------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence 962 11 245556667666677778888888764
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.9e-05 Score=71.58 Aligned_cols=92 Identities=12% Similarity=0.277 Sum_probs=63.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~ 256 (488)
|||+|||+|.||..++..|+..+. .+|.++|+++++++.....+ .+..+.++ +.+ ++|+||++..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~~~~----------g~~~~~~~~~~~-~~D~vi~~v~-- 66 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRERLEKEL----------GVETSATLPELH-SDDVLILAVK-- 66 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHHHHHHT----------CCEEESSCCCCC-TTSEEEECSC--
T ss_pred CEEEEECchHHHHHHHHHHHHCCC-CeEEEECCCHHHHHHHHHhc----------CCEEeCCHHHHh-cCCEEEEEeC--
Confidence 589999999999999999988873 38999999988776543221 12234455 567 9999999962
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
...+.++.+.+.. . +.+++.++|....
T Consensus 67 --------------~~~~~~v~~~l~~-~-~~ivv~~~~g~~~ 93 (263)
T 1yqg_A 67 --------------PQDMEAACKNIRT-N-GALVLSVAAGLSV 93 (263)
T ss_dssp --------------HHHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred --------------chhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence 1233445555544 3 6666666676654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.5e-05 Score=76.96 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=53.3
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
...+++||+|||+|.||..++..|+..|. +|+++|+++++++... +. .+..++++ +++++||+||+
T Consensus 17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~-------g~~~~~~~~~~~~~aDvvi~ 83 (310)
T 3doj_A 17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGF--KVTVWNRTLSKCDELV----EH-------GASVCESPAEVIKKCKYTIA 83 (310)
T ss_dssp -CCCSCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSGGGGHHHH----HT-------TCEECSSHHHHHHHCSEEEE
T ss_pred ccccCCEEEEECccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHH----HC-------CCeEcCCHHHHHHhCCEEEE
Confidence 34457899999999999999999999987 8999999998776532 11 12345566 56889999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 84 ~v 85 (310)
T 3doj_A 84 ML 85 (310)
T ss_dssp CC
T ss_pred Ec
Confidence 96
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.6e-05 Score=73.77 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=50.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+.+||+|||+|.||..++..|+..|. +|+++|+++++++... ..- .. ..++++ +++++||+||++.
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~~~----~~g-----~~-~~~~~~~e~~~~aDvvi~~v 72 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGL--STWGADLNPQACANLL----AEG-----AC-GAAASAREFAGVVDALVILV 72 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH----HTT-----CS-EEESSSTTTTTTCSEEEECC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHH----HcC-----Cc-cccCCHHHHHhcCCEEEEEC
Confidence 35799999999999999999999987 8999999998776432 211 11 124455 5689999999996
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.1e-05 Score=74.75 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=63.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIitag~ 255 (488)
.+||+|||+|.||..++..|+..|. +|+++|+++++++... +. .+..+++++ .++ ||+||++...
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~~~----~~-------g~~~~~~~~~~~~-aDvvi~~vp~ 80 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPG--GVTVYDIRIEAMTPLA----EA-------GATLADSVADVAA-ADLIHITVLD 80 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTT--CEEEECSSTTTSHHHH----HT-------TCEECSSHHHHTT-SSEEEECCSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHH----HC-------CCEEcCCHHHHHh-CCEEEEECCC
Confidence 4699999999999999999998887 8999999998766432 11 234556774 466 9999999631
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
+ ..++++.+.+... .|+.++|..|+
T Consensus 81 ~---------------~~~~~v~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 81 D---------------AQVREVVGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp H---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred h---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 1 1234445666655 46666665554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00015 Score=70.76 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=63.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccC-CCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSE-GSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~-dADiVIitag 254 (488)
++||+|||+|.||..++..|...+...+|+++|+++++++.. .+. . ... ..++|+ +.++ +||+||+++.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-~~~--g----~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDL--G----IID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHT--T----SCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-HHC--C----Ccc--cccCCHHHHhcCCCCEEEEcCC
Confidence 368999999999999999999887644799999998876542 111 1 111 224566 5688 9999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
.. ...+++..+..+ .|+.++++++|.
T Consensus 72 ~~----------------~~~~v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 72 VR----------------TFREIAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp HH----------------HHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred HH----------------HHHHHHHHHHhhCCCCcEEEECCCC
Confidence 11 122344444443 466766666653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00017 Score=72.43 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=52.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-c-ccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-A-MSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-e-al~dADiVIita 253 (488)
..+||+|||+|.||..++..|...|...+|+++|++++.++.. .++. ... ..++++ + ++++||+||+++
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a-~~~G------~~~--~~~~~~~~~~~~~aDvVilav 102 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLG------IID--EGTTSIAKVEDFSPDFVMLSS 102 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTT------SCS--EEESCTTGGGGGCCSEEEECS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHCC------Ccc--hhcCCHHHHhhccCCEEEEeC
Confidence 3579999999999999999999988766899999999876542 2211 011 234565 4 689999999996
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.79 E-value=2e-05 Score=76.02 Aligned_cols=96 Identities=20% Similarity=0.345 Sum_probs=65.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCC--CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGI--YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l--~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||+|||+|.||..++..|+..++ ..+|.++|+++++++....++ .+..+.+. +++++||+||++.
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~----------g~~~~~~~~e~~~~aDvVilav 71 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY----------GLTTTTDNNEVAKNADILILSI 71 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH----------CCEECSCHHHHHHHCSEEEECS
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh----------CCEEeCChHHHHHhCCEEEEEe
Confidence 3689999999999999999998875 348999999998776544332 12234565 5688999999997
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCch
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVD 298 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvd 298 (488)
++ ..+.++.+.+..+. |+.++|..++...
T Consensus 72 ----~~------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 72 ----KP------------DLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp ----CT------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred ----CH------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 11 13455666677664 5655554445444
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=76.68 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=69.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-cc---CCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MS---EGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al---~dADiVI 250 (488)
|+.+||+|||+|.||..++..|+..|. +|.++|+++++++....... ...+..+.+++ .+ +++|+||
T Consensus 3 m~~~~IgvIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~-------~~gi~~~~s~~e~v~~l~~aDvVi 73 (474)
T 2iz1_A 3 MAQANFGVVGMAVMGKNLALNVESRGY--TVAIYNRTTSKTEEVFKEHQ-------DKNLVFTKTLEEFVGSLEKPRRIM 73 (474)
T ss_dssp CTTBSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTT-------TSCEEECSSHHHHHHTBCSSCEEE
T ss_pred CCCCcEEEEeeHHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHhCc-------CCCeEEeCCHHHHHhhccCCCEEE
Confidence 445799999999999999999999887 89999999987765443321 12355666764 33 4599999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
+++.. + ..+.++.+.+... .|+.++|..+|-..
T Consensus 74 lavp~----~-----------~~v~~vl~~l~~~l~~g~iiId~s~~~~ 107 (474)
T 2iz1_A 74 LMVQA----G-----------AATDATIKSLLPLLDIGDILIDGGNTHF 107 (474)
T ss_dssp ECCCT----T-----------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred EEccC----c-----------hHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence 99621 1 1234445566655 46677777787654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=71.66 Aligned_cols=93 Identities=5% Similarity=0.043 Sum_probs=62.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
++||+|||+|.||..++..|.. +. +|.++|+++++++..... .. .+ ++..+.++++|+||++...+
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~~~~~~---g~------~~--~~~~~~~~~~D~vi~~v~~~ 66 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RF--PTLVWNRTFEKALRHQEE---FG------SE--AVPLERVAEARVIFTCLPTT 66 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TS--CEEEECSSTHHHHHHHHH---HC------CE--ECCGGGGGGCSEEEECCSSH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHHHHC---CC------cc--cCHHHHHhCCCEEEEeCCCh
Confidence 3689999999999999999988 76 899999998877653322 11 11 12225678999999996311
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
..+.++.+.+... .|+.+++..+|...
T Consensus 67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~~ 94 (289)
T 2cvz_A 67 ---------------REVYEVAEALYPYLREGTYWVDATSGEP 94 (289)
T ss_dssp ---------------HHHHHHHHHHTTTCCTTEEEEECSCCCH
T ss_pred ---------------HHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence 1133444555554 46777777777653
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.1e-05 Score=75.82 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=72.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCC---cEEEcCCccccCCCcEEEEecc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP---KIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~---~v~~ttd~eal~dADiVIitag 254 (488)
+||+|||+|.+|..++..|+..|. +|.++|+++ .+.....=.......... .+..+++.+++.++|+||+++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~--~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vilavk 78 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGE--DVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLVGLK 78 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSC--CEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC--eEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEEecC
Confidence 699999999999999999998886 899999975 232211100000000000 2233456777889999999962
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
.. .+.++.+.|..+ .|+..||.+.|-.+....+ .+. +|.++|++
T Consensus 79 ~~----------------~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l-~~~--~~~~~v~~ 123 (312)
T 3hn2_A 79 TF----------------ANSRYEELIRPLVEEGTQILTLQNGLGNEEAL-ATL--FGAERIIG 123 (312)
T ss_dssp GG----------------GGGGHHHHHGGGCCTTCEEEECCSSSSHHHHH-HHH--TCGGGEEE
T ss_pred CC----------------CcHHHHHHHHhhcCCCCEEEEecCCCCcHHHH-HHH--CCCCcEEE
Confidence 11 123445566665 5778888888988754433 333 45556654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.77 E-value=7e-05 Score=74.70 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=52.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...+||+|||+|.||..++..|+..|. +|.++|+++++++..... . +..++++ +.+++||+||++.
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~~~~~---g--------~~~~~~~~e~~~~aDvVi~~v 73 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQGK--RVAIWNRSPGKAAALVAA---G--------AHLCESVKAALSASPATIFVL 73 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHH---T--------CEECSSHHHHHHHSSEEEECC
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHC---C--------CeecCCHHHHHhcCCEEEEEe
Confidence 346799999999999999999999987 899999999877653321 1 1234565 5688999999996
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4.3e-05 Score=71.38 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=65.7
Q ss_pred ceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEeccc
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~ 255 (488)
|||+||| +|.||..++..|+..+. +|.++|+++++++....++.... . ...+.. .++ ++++++|+||++...
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~-~~~~~~~~~~D~Vi~~~~~ 74 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIA--G-DASITG-MKNEDAAEACDIAVLTIPW 74 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHH--S-SCCEEE-EEHHHHHHHCSEEEECSCH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc--c-cCCCCh-hhHHHHHhcCCEEEEeCCh
Confidence 5899999 89999999999988876 89999999887765443332111 0 112332 344 568899999999621
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
...+++.+.+....++.+++..+|+.+
T Consensus 75 ----------------~~~~~~~~~l~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 75 ----------------EHAIDTARDLKNILREKIVVSPLVPVS 101 (212)
T ss_dssp ----------------HHHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred ----------------hhHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 112233334433335778888888765
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.73 E-value=4.9e-06 Score=84.57 Aligned_cols=59 Identities=36% Similarity=0.566 Sum_probs=47.2
Q ss_pred chHHhhhhccCCCCCCCCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 113 STVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
+++++|+.++.++...+..||+|||+|+||+++||+++.+++++|++++| +++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~D 63 (331)
T 4aj2_A 2 ALKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMD 63 (331)
T ss_dssp CHHHHHEEECCC---CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH
T ss_pred chhhhhhhcccccccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHh
Confidence 45689999998765567789999999999999999999999999999988 445554444
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00026 Score=68.97 Aligned_cols=91 Identities=19% Similarity=0.389 Sum_probs=63.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
|||+|||+|.||..++..|...+. +|+++|+++++++... +. .. .. ..++++++++++|+||+++.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~~~-~~--g~----~~--~~~~~~~~~~~~D~vi~av~--- 66 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAV-ER--QL----VD--EAGQDLSLLQTAKIIFLCTP--- 66 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH-HT--TS----CS--EEESCGGGGTTCSEEEECSC---
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH-hC--CC----Cc--cccCCHHHhCCCCEEEEECC---
Confidence 589999999999999999998886 8999999988776431 11 10 11 23456644499999999962
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
...+.++.+.+..+ .|+.+++.+++
T Consensus 67 -------------~~~~~~~~~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 67 -------------IQLILPTLEKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp -------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred -------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 11345666677665 46776666654
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00025 Score=74.51 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC----------CCCcEEEcCCcccc
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL----------RSPKIESGSDIAMS 243 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~----------~~~~v~~ttd~eal 243 (488)
..-..|.+|||+|.||..+|..|+..|. +|+.+|+++++++.+...-.... .+ ...++..++| +
T Consensus 8 ~~~~~~~~ViGlGyvGlp~A~~La~~G~--~V~~~D~~~~kv~~L~~g~~pi~-epgl~~ll~~~~~~g~l~~ttd---~ 81 (431)
T 3ojo_A 8 HHHGSKLTVVGLGYIGLPTSIMFAKHGV--DVLGVDINQQTIDKLQNGQISIE-EPGLQEVYEEVLSSGKLKVSTT---P 81 (431)
T ss_dssp ----CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSC-CTTHHHHHHHHHHTTCEEEESS---C
T ss_pred cccCCccEEEeeCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHCCCCCcC-CCCHHHHHHhhcccCceEEeCc---h
Confidence 3456799999999999999999999998 99999999988776433211110 00 0346777777 4
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe-CCch
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS-NPVD 298 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T-NPvd 298 (488)
++||+||++++.|....... .-++..+...++.|.++ .|..++|+-| -|.+
T Consensus 82 ~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg 134 (431)
T 3ojo_A 82 EASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPK 134 (431)
T ss_dssp CCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred hhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence 58999999988775431000 11234455556666665 3555444443 4444
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=9.1e-06 Score=82.53 Aligned_cols=50 Identities=36% Similarity=0.472 Sum_probs=44.6
Q ss_pred chHHhhhhccCCCCCC-CCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 113 STVDRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~-~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+++++|+.++.++.+. +.+||+|||+|+||+++||+++.+++++|++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~D 53 (330)
T 3ldh_A 3 ALKDKLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVD 53 (330)
T ss_dssp CHHHHHSCCCSCCCCCCCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEEC
T ss_pred hHHHHHHhhcccccccCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4568999999887554 6789999999999999999999999999999988
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.4e-05 Score=67.29 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=65.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~ 255 (488)
.+||+|||+|.+|..++..|...+. +|.++|+++++++..+.++. ..+....+. +.++++|+||.+.+.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~--------~~~~~~~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE--------YEYVLINDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT--------CEEEECSCHHHHHHTCSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC--------CceEeecCHHHHhcCCCEEEEeCCC
Confidence 5699999999999998888777665 59999999988876555543 133344555 568899999999754
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
+. +-... ....|..+++.+++|.++
T Consensus 91 ~~-~~~~~------------------~~l~~g~~vid~~~p~~~ 115 (144)
T 3oj0_A 91 KT-PIVEE------------------RSLMPGKLFIDLGNPPNI 115 (144)
T ss_dssp SS-CSBCG------------------GGCCTTCEEEECCSSCSB
T ss_pred CC-cEeeH------------------HHcCCCCEEEEccCCccC
Confidence 42 10100 112457888999999763
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.71 E-value=7.5e-05 Score=74.54 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=65.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeC--ChhHHHHHHHHHhhcCCCC-CCCcEEEcC--Cc-cccCCCcEEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDS--NEDRCKGEMLDLQHGAPFL-RSPKIESGS--DI-AMSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di--~~e~l~g~~~dL~~~~~~~-~~~~v~~tt--d~-eal~dADiVIi 251 (488)
|||+|||+|.||..++..|+..+. +|.++|+ ++++++.....-.+. .+. ....+..++ ++ ++++++|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHP-RLGVKLNGVEIFWPEQLEKCLENAEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBT-TTTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC--eEEEEEccCCHHHHHHHHHhCcCc-ccCccccceEEecHHhHHHHHhcCCEEEE
Confidence 589999999999999999998886 8999999 887665432211000 000 002345555 65 46899999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+.... .+.++.+.+....|+.++|.++|..
T Consensus 78 ~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 78 GVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp CSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred cCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 97311 1233444444434577777777766
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.70 E-value=8.3e-05 Score=74.28 Aligned_cols=118 Identities=10% Similarity=0.159 Sum_probs=73.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~eal~dADiVIitag~ 255 (488)
+|||+|||+|.||..++..|+ .+. +|.++++++++++.....=-... ......... +.+.++..++|+||+++-
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~--~V~~~~r~~~~~~~l~~~G~~~~-~~~~~~~~~~~~~~~~~~~~D~vilavK- 76 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYH--DVTVVTRRQEQAAAIQSEGIRLY-KGGEEFRADCSADTSINSDFDLLVVTVK- 76 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHCEEEE-ETTEEEEECCEEESSCCSCCSEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC--ceEEEECCHHHHHHHHhCCceEe-cCCCeecccccccccccCCCCEEEEEeC-
Confidence 379999999999999999998 775 99999999876654432100000 000000110 011245789999999962
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
+. .+.++.+.+..+.++. ||.+.|-.+..- .+.++ +|.++|++-
T Consensus 77 ---~~------------~~~~~l~~l~~~~~~~-ivs~~nGi~~~e-~l~~~--~~~~~vl~g 120 (307)
T 3ego_A 77 ---QH------------QLQSVFSSLERIGKTN-ILFLQNGMGHIH-DLKDW--HVGHSIYVG 120 (307)
T ss_dssp ---GG------------GHHHHHHHTTSSCCCE-EEECCSSSHHHH-HHHTC--CCSCEEEEE
T ss_pred ---HH------------HHHHHHHHhhcCCCCe-EEEecCCccHHH-HHHHh--CCCCcEEEE
Confidence 11 1345556666665666 888889887542 33333 566777644
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00012 Score=71.85 Aligned_cols=92 Identities=17% Similarity=0.303 Sum_probs=64.5
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
++||+|||+ |.||..++..|...+. +|+++|+++++++.... . . +..++..+.+++||+||+++.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~-~--g--------~~~~~~~~~~~~aDvVi~av~- 76 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGRDRLQG-M--G--------IPLTDGDGWIDEADVVVLALP- 76 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHHHHHHH-T--T--------CCCCCSSGGGGTCSEEEECSC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHh-c--C--------CCcCCHHHHhcCCCEEEEcCC-
Confidence 369999999 9999999999998886 89999999887664322 1 1 111223367899999999962
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCc
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPV 297 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPv 297 (488)
. ..+.++.+.+..+ .|+.+++..++..
T Consensus 77 -------------~--~~~~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 77 -------------D--NIIEKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp -------------H--HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred -------------c--hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence 1 1246666777665 4566666655543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.68 E-value=4.6e-05 Score=78.17 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCC---cEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGS---RIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dA---DiVIi 251 (488)
+.+||+|||+|.||..++..|+..|. +|.+||+++++++... .. .+..++++ +.++++ |+||+
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~--~V~v~dr~~~~~~~l~----~~-------g~~~~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGH--ECVVYDLNVNAVQALE----RE-------GIAGARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH----TT-------TCBCCSSHHHHHHHSCSSCEEEE
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHH----HC-------CCEEeCCHHHHHhcCCCCCEEEE
Confidence 56899999999999999999999986 8999999998766432 21 12234455 345667 99999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCc
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPV 297 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPv 297 (488)
+...+ .+.++...+... .|+.+||..+|-.
T Consensus 88 ~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 88 MVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp CSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred eCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 96211 234444556655 4677777776643
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=72.37 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=49.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+||+|||+|.||..++..|...+. +|.++|+++++++.... . .+..+.++ +.++++|+||++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~-------g~~~~~~~~~~~~~~D~vi~~v 69 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVSDRNPEAIADVIA----A-------GAETASTAKAIAEQCDVIITML 69 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH----T-------TCEECSSHHHHHHHCSEEEECC
T ss_pred ceEEEECchHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHH----C-------CCeecCCHHHHHhCCCEEEEEC
Confidence 699999999999999999998876 89999999887664321 1 12334566 4688999999996
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.8e-05 Score=74.33 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=70.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHH-HhhcCCCCCCC---cEEEcCCccccC-CCcEEEEe
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD-LQHGAPFLRSP---KIESGSDIAMSE-GSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~d-L~~~~~~~~~~---~v~~ttd~eal~-dADiVIit 252 (488)
+||+|||+|.+|..++..|+..|. +|.++|+++ .+..... +.-........ .+..++|.+++. ++|+||++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~--~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila 78 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH--CVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC 78 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC--EEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence 799999999999999999998886 999999975 2322221 10000001111 122346776555 99999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+-.. . +.++.+.+..+ .|+..|+.+.|-.+... .+.+. +|.++|++
T Consensus 79 vK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~-~l~~~--~~~~~vl~ 125 (320)
T 3i83_A 79 IKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEP-EVAAA--FPDNEVIS 125 (320)
T ss_dssp CCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSH-HHHHH--STTSCEEE
T ss_pred cCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHH-HHHHH--CCCCcEEE
Confidence 7221 1 12234455554 46778888889776332 23333 44455553
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=72.43 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=64.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~ 255 (488)
.+||+|||+|.||..++..|+..+. +|.++|+++++++.... . .+..+.++ ++++++|+||++...
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~-------g~~~~~~~~~~~~~~DvVi~av~~ 96 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGH--TVTVWNRTAEKCDLFIQ----E-------GARLGRTPAEVVSTCDITFACVSD 96 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC--CEEEECSSGGGGHHHHH----T-------TCEECSCHHHHHHHCSEEEECCSS
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHH----c-------CCEEcCCHHHHHhcCCEEEEeCCC
Confidence 5799999999999999999998886 89999999887764321 1 11234455 568899999999621
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHH----hccCCCcEEEEEeCCc
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKI----AKGSPDCILLIISNPV 297 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I----~~~~p~a~vIv~TNPv 297 (488)
+ ..++++...+ ....|+.++|.++|-.
T Consensus 97 ~---------------~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~ 127 (316)
T 2uyy_A 97 P---------------KAAKDLVLGPSGVLQGIRPGKCYVDMSTVD 127 (316)
T ss_dssp H---------------HHHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred H---------------HHHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence 1 1233444433 2345777777787754
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00016 Score=76.82 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=68.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc----cCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM----SEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea----l~dADiVIita 253 (488)
|||+|||+|.||..++..|+..|. +|.++|+++++++....+.... +....+..++|+++ ++++|+||+++
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~---~~~~~i~~~~~~~e~v~~l~~aDvVilaV 76 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASA---PFAGNLKAFETMEAFAASLKKPRKALILV 76 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTS---TTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCC---CCCCCeEEECCHHHHHhcccCCCEEEEec
Confidence 689999999999999999999887 8999999998777554332110 01123666677643 34699999997
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
.. +. .+.++.+.+..+ .|+.+||..+|-..
T Consensus 77 p~----~~-----------~v~~vl~~l~~~l~~g~iIId~sng~~ 107 (478)
T 1pgj_A 77 QA----GA-----------ATDSTIEQLKKVFEKGDILVDTGNAHF 107 (478)
T ss_dssp CC----SH-----------HHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred CC----hH-----------HHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence 21 11 223344445444 46777777887654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00016 Score=71.19 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=49.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+++||+|||+|.||..++..|...+. +|+++|+++++++.. .+. .+..++++ +.++++|+||++.
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~-------g~~~~~~~~~~~~~~D~vi~~v 68 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGV--TVYAFDLMEANVAAV----VAQ-------GAQACENNQKVAAASDIIFTSL 68 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTC--EEEEECSSHHHHHHH----HTT-------TCEECSSHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHH----HHC-------CCeecCCHHHHHhCCCEEEEEC
Confidence 35799999999999999999998886 899999998776543 221 12334566 4578999999996
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.60 E-value=9.1e-05 Score=78.93 Aligned_cols=100 Identities=15% Similarity=0.277 Sum_probs=68.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc----ccCCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA----MSEGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e----al~dADiVI 250 (488)
+.++||+|||+|.||..++..|+..|+ +|+++|+++++++.....- . ...++..+.+++ .++++|+||
T Consensus 2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~g---~---~g~~i~~~~s~~e~v~~l~~aDvVi 73 (484)
T 4gwg_A 2 NAQADIALIGLAVMGQNLILNMNDHGF--VVCAFNRTVSKVDDFLANE---A---KGTKVVGAQSLKEMVSKLKKPRRII 73 (484)
T ss_dssp -CCBSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTHHHHHHHHTT---T---TTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred CCCCEEEEEChhHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHhcc---c---CCCceeccCCHHHHHhhccCCCEEE
Confidence 356899999999999999999999987 8999999998776533211 0 122444455653 355799999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCc
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPV 297 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPv 297 (488)
+++.. + +.+.++...+... .|+.++|..+|-.
T Consensus 74 l~Vp~----~-----------~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 74 LLVKA----G-----------QAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp ECSCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred EecCC----h-----------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 99621 1 1234445566555 5777778777754
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=5e-05 Score=78.77 Aligned_cols=121 Identities=10% Similarity=0.074 Sum_probs=80.5
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCC------CCeEEEEeCChhHH-HHHHHHHhhcC----C---CCCCCcEEEcCC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGI------YSNFCLIDSNEDRC-KGEMLDLQHGA----P---FLRSPKIESGSD 239 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l------~~el~L~Di~~e~l-~g~~~dL~~~~----~---~~~~~~v~~ttd 239 (488)
..++.||+|||||+.|+++|..|+.++. ..+|.||.++++.. +.....++..- . +....++..++|
T Consensus 31 ~~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~d 110 (391)
T 4fgw_A 31 AEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPD 110 (391)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESC
T ss_pred cCCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCC
Confidence 3457799999999999999999997642 13699998765421 11233333211 1 123567888999
Q ss_pred c-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCC-------chhHHHHHHHhcCC
Q psy12825 240 I-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNP-------VDVLTYISWKLSGF 310 (488)
Q Consensus 240 ~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNP-------vdi~t~~~~k~sg~ 310 (488)
+ +++++||+||+++. ...++++++++..+- ++..+|.++.= ..++++++.+..+.
T Consensus 111 l~~al~~ad~ii~avP----------------s~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~ 174 (391)
T 4fgw_A 111 LIDSVKDVDIIVFNIP----------------HQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGI 174 (391)
T ss_dssp HHHHHTTCSEEEECSC----------------GGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCC
T ss_pred HHHHHhcCCEEEEECC----------------hhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCc
Confidence 8 67999999999862 235688888888774 56666666532 23677777766543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=72.49 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=63.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh-hcCC--CCCCCcE-EEcCCc-cccCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ-HGAP--FLRSPKI-ESGSDI-AMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~-~~~~--~~~~~~v-~~ttd~-eal~dADiV 249 (488)
|+++||+|||+|.||..++..|+..+. +|.++|+++++++....... .... .....++ ..++|+ ++++++|+|
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 79 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI 79 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEE
Confidence 345799999999999999999998886 89999999887765433211 0000 0000112 234566 458899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEEE
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLII 293 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~ 293 (488)
|+++... ...++++.+..+. ++.+++..
T Consensus 80 i~~v~~~----------------~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 80 LIVVPAI----------------HHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp EECSCGG----------------GHHHHHHHHGGGCCTTCEEEES
T ss_pred EEeCCch----------------HHHHHHHHHHHhCCCCCEEEEc
Confidence 9997321 1134556666653 55655544
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00027 Score=75.18 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=66.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc----cCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM----SEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea----l~dADiVIita 253 (488)
+||+|||+|.||..++..|+..|. +|.++|+++++++..... +. . ...+..++++++ ++++|+||+++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~--~~---~-g~gi~~~~~~~e~v~~l~~aDvVilaV 74 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGF--VVCAFNRTVSKVDDFLAN--EA---K-GTKVLGAHSLEEMVSKLKKPRRIILLV 74 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTHHHHHHHHT--TT---T-TSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred CeEEEEChHHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHhc--cc---c-CCCeEEeCCHHHHHhhccCCCEEEEeC
Confidence 689999999999999999999887 899999998877654321 00 0 023455667643 36999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
.. +. .+.++...+..+ .|+.+||..+|-..
T Consensus 75 p~----~~-----------~v~~vl~~l~~~l~~g~iII~~s~~~~ 105 (482)
T 2pgd_A 75 KA----GQ-----------AVDNFIEKLVPLLDIGDIIIDGGNSEY 105 (482)
T ss_dssp CT----TH-----------HHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred CC----hH-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 21 11 223334445444 45677777777654
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00044 Score=69.41 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=49.6
Q ss_pred CceEEEEecccchHHHHHHHHHcC-CCCeEEEEeCCh---hHHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCCcEEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQG-IYSNFCLIDSNE---DRCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGSRIVII 251 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~-l~~el~L~Di~~---e~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dADiVIi 251 (488)
++||+|||+|.||..++..|+..| . +|+++|+++ ++.+.....+... . + .+ +..+++++||+||+
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~----g---~-~~~s~~e~~~~aDvVi~ 93 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAEL----G---V-EPLDDVAGIACADVVLS 93 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHT----T---C-EEESSGGGGGGCSEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHC----C---C-CCCCHHHHHhcCCEEEE
Confidence 469999999999999999999988 6 899999987 2333333333321 1 1 23 33467899999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
++.
T Consensus 94 avp 96 (317)
T 4ezb_A 94 LVV 96 (317)
T ss_dssp CCC
T ss_pred ecC
Confidence 973
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.53 E-value=8.5e-05 Score=76.68 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=60.7
Q ss_pred CceEEEEecccchHHHHHHHHHc-CCCCeEEEEe---CChhHHHHHHHHHhh--cCCCCCC------CcE-EEcCCc-cc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQ-GIYSNFCLID---SNEDRCKGEMLDLQH--GAPFLRS------PKI-ESGSDI-AM 242 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~D---i~~e~l~g~~~dL~~--~~~~~~~------~~v-~~ttd~-ea 242 (488)
+|||+|||+|.||..++..|+.. |. +|.++| ++++.++.......- ....... .++ ..++|+ ++
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 79 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIA 79 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHH
Confidence 37999999999999999999874 76 899999 766655432111000 0000001 012 245677 46
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC-CCcEEEE
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS-PDCILLI 292 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv 292 (488)
+++||+||+++... ..+++++.|..+. |+.+|+.
T Consensus 80 ~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~ 114 (404)
T 3c7a_A 80 ISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG 114 (404)
T ss_dssp HTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred hCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence 89999999997321 1356667777764 4554433
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00087 Score=57.45 Aligned_cols=67 Identities=27% Similarity=0.447 Sum_probs=47.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiV 249 (488)
.+||+|+|+|.+|..++..|...+. +++++|.++++++....+.. ..+... ++. ..+.++|+|
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~~~--------~~~~~~d~~~~~~l~~~~~~~~d~v 73 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEID--------ALVINGDCTKIKTLEDAGIEDADMY 73 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCS--------SEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhcC--------cEEEEcCCCCHHHHHHcCcccCCEE
Confidence 4799999999999999999988875 89999999877654322211 111111 122 237899999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
|++.
T Consensus 74 i~~~ 77 (140)
T 1lss_A 74 IAVT 77 (140)
T ss_dssp EECC
T ss_pred EEee
Confidence 9996
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.3e-05 Score=73.26 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=66.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC--CCcEEEcCCccccCCCcEEEEeccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR--SPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~--~~~v~~ttd~eal~dADiVIitag~ 255 (488)
|||+|||+|.||..++..|+..|. +|.++|+++++++. +........ ...+. .++.++++++|+||++...
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~----l~~~~~~~~~~~~~~~-~~~~~~~~~~d~vi~~v~~ 73 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGH--EVQGWLRVPQPYCS----VNLVETDGSIFNESLT-ANDPDFLATSDLLLVTLKA 73 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSEEE----EEEECTTSCEEEEEEE-ESCHHHHHTCSEEEECSCG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC--CEEEEEcCccceee----EEEEcCCCceeeeeee-ecCccccCCCCEEEEEecH
Confidence 589999999999999999999887 89999998765432 221100000 01122 2445678899999999731
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchh
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDV 299 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi 299 (488)
. .+.++.+.+..+ .|+.+++..+|..+.
T Consensus 74 ~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 74 W----------------QVSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp G----------------GHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred H----------------hHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 1 124555566665 467778888887654
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=1.1e-05 Score=80.59 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=36.7
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~~ 172 (488)
.||+|||+|+||.++||+++++++++|++++| ++..++.+|.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL 45 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDL 45 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhh
Confidence 49999999999999999999999999999999 4566666553
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.51 E-value=8e-05 Score=73.05 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+++||+|||+|.||..++..|...+. +|.++| ++++++... +. .+..+.++ +.++++|+||++.
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~~~~----~~-------g~~~~~~~~~~~~~~D~vi~~v 66 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARAGH--QLHVTT-IGPVADELL----SL-------GAVNVETARQVTEFADIIFIMV 66 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHTTC--EEEECC-SSCCCHHHH----TT-------TCBCCSSHHHHHHTCSEEEECC
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCC--EEEEEc-CHHHHHHHH----Hc-------CCcccCCHHHHHhcCCEEEEEC
Confidence 35799999999999999999998876 899999 887665432 11 11223455 4588999999996
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00038 Score=69.63 Aligned_cols=66 Identities=11% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC--hhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN--EDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~--~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
+++||+|||+|.||..++..|+..|. .+|+++|++ +++.+. +.+. .+..++++ +++++||+||++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~----~~~~-------g~~~~~~~~e~~~~aDvVi~~ 90 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGA-IDMAAYDAASAESWRPR----AEEL-------GVSCKASVAEVAGECDVIFSL 90 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHH----HHHT-------TCEECSCHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHH----HHHC-------CCEEeCCHHHHHhcCCEEEEe
Confidence 46799999999999999999998884 489999997 444432 2221 12345566 568999999999
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
+
T Consensus 91 v 91 (312)
T 3qsg_A 91 V 91 (312)
T ss_dssp S
T ss_pred c
Confidence 6
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00035 Score=74.68 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccC---CCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSE---GSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~---dADiVIi 251 (488)
-..+|+|||+|.||..++..|+..|. +|.++|+++++++....... . ...+..+.+++ .++ ++|+||+
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~~-----~-~~gi~~~~s~~e~v~~l~~aDvVil 80 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGF--TVCAYNRTQSKVDHFLANEA-----K-GKSIIGATSIEDFISKLKRPRKVML 80 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSHHHHHHHHTTT-----T-TSSEECCSSHHHHHHTSCSSCEEEE
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHcccc-----c-CCCeEEeCCHHHHHhcCCCCCEEEE
Confidence 34699999999999999999999997 89999999987765332110 0 12355566763 344 4999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
++.. + ..++++.+.+..+ .|+.+||..+|-..
T Consensus 81 ~Vp~----~-----------~~v~~vl~~l~~~l~~g~iIId~s~~~~ 113 (497)
T 2p4q_A 81 LVKA----G-----------APVDALINQIVPLLEKGDIIIDGGNSHF 113 (497)
T ss_dssp CCCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred EcCC----h-----------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence 9721 1 1344555666666 45677787887643
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00013 Score=72.11 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=65.6
Q ss_pred CceEEEEecccchHHHHHHHHHc-----C-CCCeEEEEeCChhHHHHHHHHHh-hcCCCCC---CCcEEEcCCccccCCC
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQ-----G-IYSNFCLIDSNEDRCKGEMLDLQ-HGAPFLR---SPKIESGSDIAMSEGS 246 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~-----~-l~~el~L~Di~~e~l~g~~~dL~-~~~~~~~---~~~v~~ttd~eal~dA 246 (488)
+|||+|||+|.||..++..|+.. + . +|.++|+ +++++....+.. ....... ..++..+++.++++++
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLL--EVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTV 84 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSE--EEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCC--CEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCC
Confidence 46999999999999999999887 6 5 8999998 665554332110 0000000 0112334555678899
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchh
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDV 299 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi 299 (488)
|+||++.... . +.++.+.+..+ .|+.+||.++|-.+.
T Consensus 85 D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 85 DYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp EEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred CEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 9999997321 1 23444555554 456667777887654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0001 Score=69.68 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=61.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
+++||+|||+|.+|..++..|...+. +|.++|+++++++. +.+. . +..+ ++ ++++++|+||++..
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~--~V~~~~r~~~~~~~----~~~~-----g--~~~~-~~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGF--KVVVGSRNPKRTAR----LFPS-----A--AQVT-FQEEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTC--CEEEEESSHHHHHH----HSBT-----T--SEEE-EHHHHTTSCSEEEECSC
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHc-----C--Ccee-cHHHHHhCCCEEEECCC
Confidence 45799999999999999999998886 89999999876553 2211 1 1222 44 56899999999973
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
.. . ..+++ . +....++.+++.++|+...
T Consensus 93 ~~----~-~~~v~-------~-----l~~~~~~~~vv~~s~g~~~ 120 (215)
T 2vns_A 93 RE----H-YSSLC-------S-----LSDQLAGKILVDVSNPTEQ 120 (215)
T ss_dssp GG----G-SGGGG-------G-----GHHHHTTCEEEECCCCCHH
T ss_pred hH----H-HHHHH-------H-----HHHhcCCCEEEEeCCCccc
Confidence 11 1 11111 1 2222367888889998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0011 Score=62.35 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=73.5
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE---cCCc-cccCCCc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES---GSDI-AMSEGSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~---ttd~-eal~dAD 247 (488)
..++.+||.|+|| |.+|..++..|+..|. +|+++++++++++..... .. ..+.. +.+. +++.++|
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~--~~------~~~~~~Dl~~~~~~~~~~~D 86 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGPELRER--GA------SDIVVANLEEDFSHAFASID 86 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHT--TC------SEEEECCTTSCCGGGGTTCS
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHhC--CC------ceEEEcccHHHHHHHHcCCC
Confidence 4456789999999 9999999999999886 999999998876543211 00 01111 0233 5789999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+||.+++.... ......+..|+.-...+.+.+.+.... .+|++|-
T Consensus 87 ~vi~~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS 131 (236)
T 3e8x_A 87 AVVFAAGSGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS 131 (236)
T ss_dssp EEEECCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred EEEECCCCCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 99999875432 234555667877777778887776544 3555543
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00034 Score=68.68 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=49.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||+|.||..++..|+..+. +|.++|+++++++.. .+. .+..++++ +.++++|+||++.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~~~----~~~-------g~~~~~~~~~~~~~~Dvvi~~v 64 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGY--PLIIYDVFPDACKEF----QDA-------GEQVVSSPADVAEKADRIITML 64 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTC--CEEEECSSTHHHHHH----HTT-------TCEECSSHHHHHHHCSEEEECC
T ss_pred CeEEEEeccHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH----HHc-------CCeecCCHHHHHhcCCEEEEeC
Confidence 589999999999999999998886 899999998876542 221 12344566 4578999999996
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00048 Score=68.82 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=51.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||++||.|.||..+|..|+..|+ +|+.||+++++++... .. -.....++ +..++||+||.+.
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~~l~----~~-------Ga~~a~s~~e~~~~~dvv~~~l 67 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGY--LLNVFDLVQSAVDGLV----AA-------GASAARSARDAVQGADVVISML 67 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSSHHHHHHHH----HT-------TCEECSSHHHHHTTCSEEEECC
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCC--eEEEEcCCHHHHHHHH----Hc-------CCEEcCCHHHHHhcCCceeecC
Confidence 5699999999999999999999998 8999999998776432 21 11234566 5689999999985
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00011 Score=72.75 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=67.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIitag~~ 256 (488)
+||+|||+|.+|..++..|+..+. +|.++|++++.++ +..... .....+. ....+++ .++|+||+++-
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~--~V~~~~r~~~~~~-----~~~~~g-~~~~~~~-~~~~~~~~~~~D~vilavk-- 71 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLP--HTTLIGRHAKTIT-----YYTVPH-APAQDIV-VKGYEDVTNTFDVIIIAVK-- 71 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCT--TCEEEESSCEEEE-----EESSTT-SCCEEEE-EEEGGGCCSCEEEEEECSC--
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeccCcEE-----EEecCC-eecccee-cCchHhcCCCCCEEEEeCC--
Confidence 699999999999999999998886 8999999865432 111100 0011222 2223555 89999999962
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+. .+.++.+.+..+ .|+..||.+.|-.+.... +|.++|++
T Consensus 72 --~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-------~~~~~v~~ 112 (294)
T 3g17_A 72 --TH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-------IPFKNVCQ 112 (294)
T ss_dssp --GG------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-------CCCSCEEE
T ss_pred --cc------------CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-------CCCCcEEE
Confidence 11 123334444443 456778888898765322 56666654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0063 Score=55.23 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=78.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-cc--cCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-AM--SEG 245 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-ea--l~d 245 (488)
...++|.|+|+|.+|..++..|... +. +|+++|.++++++... +. . ..+... ++ + ++ +.+
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~-~~--g------~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHR-SE--G------RNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHH-HT--T------CCEEECCTTCHHHHHTBCSCCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHH-HC--C------CCEEEcCCCCHHHHHhccCCCC
Confidence 4467999999999999999999887 86 8999999998765421 11 1 122211 22 1 23 789
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCChHHH
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNLDSM 325 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~ 325 (488)
+|+||++.+. ......++..+++.+|+..++..+|-.+.. ..+.+ .|. +.++.- ...-..
T Consensus 106 ad~vi~~~~~---------------~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-~~l~~-~G~--~~vi~p-~~~~a~ 165 (183)
T 3c85_A 106 VKLVLLAMPH---------------HQGNQTALEQLQRRNYKGQIAAIAEYPDQL-EGLLE-SGV--DAAFNI-YSEAGS 165 (183)
T ss_dssp CCEEEECCSS---------------HHHHHHHHHHHHHTTCCSEEEEEESSHHHH-HHHHH-HTC--SEEEEH-HHHHHH
T ss_pred CCEEEEeCCC---------------hHHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHH-cCC--CEEEch-HHHHHH
Confidence 9999998531 112223344556667777777766644332 23333 344 355533 222222
Q ss_pred HHHHHHHHHhCCCC
Q psy12825 326 RFRVLLAQKLGLSP 339 (488)
Q Consensus 326 R~~~~lA~~Lgv~p 339 (488)
++...+.+.++.+.
T Consensus 166 ~l~~~~~~~~~~~~ 179 (183)
T 3c85_A 166 GFARHVCKQLEPQF 179 (183)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHHHHHhcCCcc
Confidence 34444455555444
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0002 Score=69.07 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+++||+|||+|.||..++..|...+. +|.++|+++++++.....+. +..++++ +.++++|+||++.
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~~~~~D~Vi~~v 68 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQTPH--ELIISGSSLERSKEIAEQLA----------LPYAMSHQDLIDQVDLVILGI 68 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTSSC--EEEEECSSHHHHHHHHHHHT----------CCBCSSHHHHHHTCSEEEECS
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCC--eEEEECCCHHHHHHHHHHcC----------CEeeCCHHHHHhcCCEEEEEe
Confidence 45799999999999999999887774 89999999987765433321 1123466 4578999999996
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00074 Score=67.22 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=43.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.||++||.|.||..+|..|+..|+ +|+.||+++++.+. +.+. ......++ +.++++|+||++.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------G~~~~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGY--ELVVWNRTASKAEP----LTKL-------GATVVENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC--EEEEC-------CT----TTTT-------TCEECSSGGGGCCTTCEEEECC
T ss_pred CcEEEEecHHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH----HHHc-------CCeEeCCHHHHHhcCCceeeec
Confidence 489999999999999999999998 99999999876542 2111 12334565 6789999999985
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0021 Score=57.09 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=48.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-c-ccCC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-A-MSEG 245 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-e-al~d 245 (488)
+....++|+|+|+|.+|..++..|...+. +|+++|.++++++. +... ....+... ++ + + .+.+
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~--~V~vid~~~~~~~~----~~~~----~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGH--SVVVVDKNEYAFHR----LNSE----FSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCGGGGGG----SCTT----CCSEEEESCTTSHHHHHTTTGGG
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHH----HHhc----CCCcEEEecCCCHHHHHHcCccc
Confidence 34456799999999999999999988886 89999999876542 1100 01122211 12 1 2 2788
Q ss_pred CcEEEEecc
Q psy12825 246 SRIVIITAG 254 (488)
Q Consensus 246 ADiVIitag 254 (488)
+|+||++.+
T Consensus 85 ad~Vi~~~~ 93 (155)
T 2g1u_A 85 ADMVFAFTN 93 (155)
T ss_dssp CSEEEECSS
T ss_pred CCEEEEEeC
Confidence 999999964
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00058 Score=59.45 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=48.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc---c--ccCCCcE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI---A--MSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~---e--al~dADi 248 (488)
++++|.|+|+|.+|..++..|...|. +++++|.++++++..... . ..+... ++. + .+.++|+
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~~---~------~~~~~gd~~~~~~l~~~~~~~~d~ 73 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLEDE---G------FDAVIADPTDESFYRSLDLEGVSA 73 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHT---T------CEEEECCTTCHHHHHHSCCTTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHC---C------CcEEECCCCCHHHHHhCCcccCCE
Confidence 35689999999999999999998887 899999999876643211 1 122211 222 1 3679999
Q ss_pred EEEecc
Q psy12825 249 VIITAG 254 (488)
Q Consensus 249 VIitag 254 (488)
||++.+
T Consensus 74 vi~~~~ 79 (141)
T 3llv_A 74 VLITGS 79 (141)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999863
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00089 Score=68.16 Aligned_cols=90 Identities=11% Similarity=0.242 Sum_probs=60.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-ccc----CCCcEEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMS----EGSRIVII 251 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal----~dADiVIi 251 (488)
.+||+|||+|.||.+++..|...|. +|+++|++++.++.. .++ . . ..+.++ +.+ ++||+||+
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a-~~~--G------~--~~~~~~~e~~~~a~~~aDlVil 74 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANH--SVFGYNRSRSGAKSA-VDE--G------F--DVSADLEATLQRAAAEDALIVL 74 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTC--CEEEECSCHHHHHHH-HHT--T------C--CEESCHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHc--C------C--eeeCCHHHHHHhcccCCCEEEE
Confidence 4689999999999999999998886 899999998866532 221 1 1 123454 334 35799999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
++. ...+.++.+.+..+.|+++++.++.
T Consensus 75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~S 102 (341)
T 3ktd_A 75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVVS 102 (341)
T ss_dssp CSC----------------HHHHHHHHHHHHHHCTTCCEEECCS
T ss_pred eCC----------------HHHHHHHHHHHHccCCCCEEEEcCC
Confidence 962 1233444455555567776666653
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0013 Score=65.30 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=55.3
Q ss_pred CceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
++||+||| +|.||..++..|...|. +|.++|++++. +..+++++||+||+++..
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~--~V~~~~~~~~~-----------------------~~~~~~~~aDvVilavp~ 75 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA-----------------------VAESILANADVVIVSVPI 75 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG-----------------------GHHHHHTTCSEEEECSCG
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCC--eEEEEECCccc-----------------------CHHHHhcCCCEEEEeCCH
Confidence 35899999 99999999999998887 89999987641 112467899999999721
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
. .+.++.+.+..+ .|+.+|+.++
T Consensus 76 ~----------------~~~~vl~~l~~~l~~~~iv~~~~ 99 (298)
T 2pv7_A 76 N----------------LTLETIERLKPYLTENMLLADLT 99 (298)
T ss_dssp G----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred H----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence 1 145555666665 4566555543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.002 Score=55.36 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=46.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----c-ccCCCcE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----A-MSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----e-al~dADi 248 (488)
++++|.|+|+|.+|..++..|...+. +++++|.++++++. +.+. ...+... ++. + .+.++|+
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~--~v~~~d~~~~~~~~----~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~ 73 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNA----YASY-----ATHAVIANATEENELLSLGIRNFEY 73 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHT----TTTT-----CSEEEECCTTCHHHHHTTTGGGCSE
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHh-----CCEEEEeCCCCHHHHHhcCCCCCCE
Confidence 45689999999999999999988886 79999998865542 2111 1122211 122 2 2678999
Q ss_pred EEEecc
Q psy12825 249 VIITAG 254 (488)
Q Consensus 249 VIitag 254 (488)
||++.+
T Consensus 74 vi~~~~ 79 (144)
T 2hmt_A 74 VIVAIG 79 (144)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999974
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00072 Score=59.25 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=68.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiV 249 (488)
..+|.|+|+|.+|..++..|...+. +++++|.++++++... +. ...+... ++. ..+.+||+|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~----~~-----g~~~i~gd~~~~~~l~~a~i~~ad~v 75 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELR----ER-----GVRAVLGNAANEEIMQLAHLECAKWL 75 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHH----HT-----TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHH----Hc-----CCCEEECCCCCHHHHHhcCcccCCEE
Confidence 3589999999999999999998887 8999999998776432 11 1122221 222 136799999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI 316 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi 316 (488)
|++.+.. ..|.. ++..+++.+|+..+|.-.|-.+- ...+.+ .|. ..|+
T Consensus 76 i~~~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~~~-~~~l~~-~G~--d~vi 123 (140)
T 3fwz_A 76 ILTIPNG-----------YEAGE----IVASARAKNPDIEIIARAHYDDE-VAYITE-RGA--NQVV 123 (140)
T ss_dssp EECCSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSHHH-HHHHHH-TTC--SEEE
T ss_pred EEECCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCHHH-HHHHHH-CCC--CEEE
Confidence 9985311 12322 34455666777766665553332 233443 444 3555
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00026 Score=71.76 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhC
Q psy12825 129 PDQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVA 170 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~ 170 (488)
...||+|||+|+||+++||+++.+++++|++++| +++.++.+
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~ 52 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAI 52 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHh
Confidence 3469999999999999999999999999999988 34544433
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.011 Score=58.16 Aligned_cols=116 Identities=14% Similarity=0.043 Sum_probs=75.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----cccCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMSEG 245 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal~d 245 (488)
.++.++|.|+|| |.+|++++..|+..|. +|+++|++.+..+.....+.+.. .....+....| . +.+++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~ 83 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY--PGRFETAVVEDMLKQGAYDEVIKG 83 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS--TTTEEEEECSCTTSTTTTTTTTTT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC--CCceEEEEecCCcChHHHHHHHcC
Confidence 345689999999 9999999999999886 89999998876654433332211 01111111222 2 34678
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+|+||.+++.... .....+.+..|+.-...+.+.+.+...-..+|++|
T Consensus 84 ~d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~S 131 (342)
T 1y1p_A 84 AAGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131 (342)
T ss_dssp CSEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred CCEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 9999999875432 23445567788888888888876433224455554
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.007 Score=53.42 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=73.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----c-ccCCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESG--SDI----A-MSEGS 246 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----e-al~dA 246 (488)
|+..||.|+|+|.+|..++..|...+. +++++|.+ +++++.....+.+ ...+... +|. + .+.+|
T Consensus 1 ~~~~~vlI~G~G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i~~a 72 (153)
T 1id1_A 1 HRKDHFIVCGHSILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD------NADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT------TCEEEESCTTSHHHHHHHTTTTC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcC------CCeEEEcCCCCHHHHHHcChhhC
Confidence 356789999999999999999988886 89999997 4555433222211 1122221 222 2 48999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCchhHHHHHHHhcCCCCCcEEeecCChHHH
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVDVLTYISWKLSGFPKNRVIGSGTNLDSM 325 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvdi~t~~~~k~sg~p~~rViG~gt~lds~ 325 (488)
|+||++.+. + ..|.. ++...++..|+..++.- .||... ..+. ..|. ..++.- ..
T Consensus 73 d~vi~~~~~---------d--~~n~~----~~~~a~~~~~~~~ii~~~~~~~~~--~~l~-~~G~--~~vi~p-----~~ 127 (153)
T 1id1_A 73 RAILALSDN---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSKNL--NKIK-MVHP--DIILSP-----QL 127 (153)
T ss_dssp SEEEECSSC---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGGGH--HHHH-TTCC--SEEECH-----HH
T ss_pred CEEEEecCC---------h--HHHHH----HHHHHHHHCCCCEEEEEECCHHHH--HHHH-HcCC--CEEEcH-----HH
Confidence 999998531 1 12322 23344445566555554 455542 2233 3344 456522 22
Q ss_pred HHHHHHHHHhC
Q psy12825 326 RFRVLLAQKLG 336 (488)
Q Consensus 326 R~~~~lA~~Lg 336 (488)
-....+++.+.
T Consensus 128 ~~~~~l~~~~~ 138 (153)
T 1id1_A 128 FGSEILARVLN 138 (153)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 33455666653
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0016 Score=65.90 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+.+||+|||+|.||.+++..|...+. +|+++|.+++.....+.+. ... .+ ++ +++++||+||+++
T Consensus 15 ~~~~I~IIG~G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~a~~~--------G~~--~~-~~~e~~~~aDvVilav 80 (338)
T 1np3_A 15 QGKKVAIIGYGSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEAH--------GLK--VA-DVKTAVAAADVVMILT 80 (338)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHT--------TCE--EE-CHHHHHHTCSEEEECS
T ss_pred cCCEEEEECchHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHHHC--------CCE--Ec-cHHHHHhcCCEEEEeC
Confidence 45789999999999999999998886 7999999876432222211 112 23 55 5688999999996
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=54.72 Aligned_cols=69 Identities=20% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-cccCCCcEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-AMSEGSRIV 249 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-eal~dADiV 249 (488)
.++||+|+|+|.+|..++..|...+. .+|+++|+++++++... +. ...+... ++ . +.++++|+|
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~~~----~~-----~~~~~~~d~~~~~~~~~~~~~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSN-YSVTVADHDLAALAVLN----RM-----GVATKQVDAKDEAGLAKALGGFDAV 73 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSS-EEEEEEESCHHHHHHHH----TT-----TCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHH----hC-----CCcEEEecCCCHHHHHHHHcCCCEE
Confidence 35799999999999999999998872 38999999988776432 11 1122111 12 1 357899999
Q ss_pred EEecc
Q psy12825 250 IITAG 254 (488)
Q Consensus 250 Iitag 254 (488)
|.+++
T Consensus 74 i~~~~ 78 (118)
T 3ic5_A 74 ISAAP 78 (118)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 99974
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0027 Score=61.15 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=45.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeC--ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDS--NEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di--~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||+|.||..++..|+..+. +|+++|+ +++.++. +...- +. +++ +.+++||+||++.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~----~~~~g-------~~--~~~~~~~~~aDvvi~~v 64 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGV--EVVTSLEGRSPSTIER----ARTVG-------VT--ETSEEDVYSCPVVISAV 64 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHH----HHHHT-------CE--ECCHHHHHTSSEEEECS
T ss_pred CeEEEEechHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHH----HHHCC-------Cc--CCHHHHHhcCCEEEEEC
Confidence 589999999999999999998886 8999988 5554443 22211 11 345 5578999999996
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.002 Score=67.15 Aligned_cols=95 Identities=13% Similarity=0.229 Sum_probs=64.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----c-ccCCCcE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----A-MSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----e-al~dADi 248 (488)
..++|.|+|+|.+|..++..|...+. +++++|.|+++++... +.. ..+... ++. + .+.+||+
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~----~~g-----~~vi~GDat~~~~L~~agi~~A~~ 71 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIETLR----KFG-----MKVFYGDATRMDLLESAGAAKAEV 71 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHH----HTT-----CCCEESCTTCHHHHHHTTTTTCSE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHH----hCC-----CeEEEcCCCCHHHHHhcCCCccCE
Confidence 34689999999999999999998887 8999999998776432 210 122221 232 2 3889999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
||++.+ +-..-..++..+++.+|+..||.-++-
T Consensus 72 viv~~~---------------~~~~n~~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 72 LINAID---------------DPQTNLQLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp EEECCS---------------SHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred EEECCC---------------ChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 999863 122334456666777888666665543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00098 Score=62.62 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=48.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVI 250 (488)
|||.|+|+|.+|..++..|...+. +++++|.++++++....... ..+... ++. ..+++||+||
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~l~~~~~--------~~~i~gd~~~~~~l~~a~i~~ad~vi 70 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKY--GVVIINKDRELCEEFAKKLK--------ATIIHGDGSHKEILRDAEVSKNDVVV 70 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHHSS--------SEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHcC--------CeEEEcCCCCHHHHHhcCcccCCEEE
Confidence 689999999999999999998887 89999999987764332211 122221 221 2488999999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 71 ~~~ 73 (218)
T 3l4b_C 71 ILT 73 (218)
T ss_dssp ECC
T ss_pred Eec
Confidence 985
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0017 Score=59.87 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=67.5
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----cccCCCcEEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----AMSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----eal~dADiVIi 251 (488)
|||.|+|| |.+|..++..|+..|. +|++++++++.+... .. ...+. ..|+ +++.++|+||.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~----~~------~~~~~-~~D~~d~~~~~~~~~d~vi~ 67 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKITQT----HK------DINIL-QKDIFDLTLSDLSDQNVVVD 67 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHHHH----CS------SSEEE-ECCGGGCCHHHHTTCSEEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhhhc----cC------CCeEE-eccccChhhhhhcCCCEEEE
Confidence 58999998 9999999999999986 999999988765432 11 11222 1232 46899999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+++.+... ...|+...+.+.+.+.+... ..+|++|
T Consensus 68 ~ag~~~~~-------~~~~~~~~~~l~~a~~~~~~-~~~v~~S 102 (221)
T 3ew7_A 68 AYGISPDE-------AEKHVTSLDHLISVLNGTVS-PRLLVVG 102 (221)
T ss_dssp CCCSSTTT-------TTSHHHHHHHHHHHHCSCCS-SEEEEEC
T ss_pred CCcCCccc-------cchHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 98764321 33477777888888877643 3455554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0014 Score=60.83 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=68.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----cccCCCcEEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----AMSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----eal~dADiVIi 251 (488)
|||.|+|| |.+|..++..|+..|. +|++++++++.+.. +.. ....+. ..|+ +++.++|+||.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~----~~~-----~~~~~~-~~D~~d~~~~~~~~~d~vi~ 68 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKAAD----RLG-----ATVATL-VKEPLVLTEADLDSVDAVVD 68 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HTC-----TTSEEE-ECCGGGCCHHHHTTCSEEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEeccccccc----ccC-----CCceEE-ecccccccHhhcccCCEEEE
Confidence 58999999 9999999999999986 99999998876542 211 112222 2232 46889999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+++....+. ....|+...+.+.+.+.+.. ..+|++|
T Consensus 69 ~ag~~~~~~-----~~~~n~~~~~~l~~a~~~~~--~~~v~~S 104 (224)
T 3h2s_A 69 ALSVPWGSG-----RGYLHLDFATHLVSLLRNSD--TLAVFIL 104 (224)
T ss_dssp CCCCCTTSS-----CTHHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred CCccCCCcc-----hhhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence 987652221 12457777788888887766 4455554
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00032 Score=68.74 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=40.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
++||+|||+|.||..++..|+.. . +| .++|+++++++.....+. . .++|++ .++++|+||++.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~--~v~~v~~~~~~~~~~~~~~~g--------~---~~~~~~~~~~~~DvVilav 66 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-Y--EIGYILSRSIDRARNLAEVYG--------G---KAATLEKHPELNGVVFVIV 66 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHTC--------C---CCCSSCCCCC---CEEECS
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-C--cEEEEEeCCHHHHHHHHHHcC--------C---ccCCHHHHHhcCCEEEEeC
Confidence 36899999999999999888766 4 77 599999887765432221 1 234564 578999999996
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0017 Score=64.99 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
..++|+|||+|.+|..++..|+.. + ..+|.++|+++++++....++.. ++....++ +++++||+||++.
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~~~l~~~~~~--------~~~~~~~~~e~v~~aDiVi~at 204 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFS-FKEVRIWNRTKENAEKFADTVQG--------EVRVCSSVQEAVAGADVIITVT 204 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCC-CSEEEEECSSHHHHHHHHHHSSS--------CCEECSSHHHHHTTCSEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHhhC--------CeEEeCCHHHHHhcCCEEEEEe
Confidence 356899999999999999988775 5 35899999999887765443321 23445566 5689999999986
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0031 Score=64.30 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=56.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..++|+|||+|.+|..++..+.......+|.++|+++++++..+.++... ....+....++ +++++||+||++..
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~----~g~~~~~~~~~~eav~~aDiVi~aTp 203 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY----SGLTIRRASSVAEAVKGVDIITTVTA 203 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC----TTCEEEECSSHHHHHTTCSEEEECCC
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc----cCceEEEeCCHHHHHhcCCEEEEecc
Confidence 34689999999999998887765333468999999999988877666431 12235555676 57899999999863
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.00029 Score=66.20 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=47.4
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
+....+||+|||+|.||..++..|...+. +|.++|++++ .+. +... .+..++..+.++++|+||++
T Consensus 15 ~~~~~~~I~iIG~G~mG~~la~~L~~~G~--~V~~~~r~~~-~~~----~~~~-------g~~~~~~~~~~~~aDvVila 80 (201)
T 2yjz_A 15 SSEKQGVVCIFGTGDFGKSLGLKMLQCGY--SVVFGSRNPQ-VSS----LLPR-------GAEVLCYSEAASRSDVIVLA 80 (201)
Confidence 33566799999999999999999987775 7899998765 322 1110 12223223568899999999
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 81 v 81 (201)
T 2yjz_A 81 V 81 (201)
Confidence 6
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0021 Score=63.07 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=52.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|+|||+|.+|..++..|...+. +|.++|++.++++.. .+.. .+....++ +.++++|+||++.
T Consensus 127 ~~~~~v~iiGaG~~g~aia~~L~~~g~--~V~v~~r~~~~~~~l----~~~~------g~~~~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 127 VKEKSILVLGAGGASRAVIYALVKEGA--KVFLWNRTKEKAIKL----AQKF------PLEVVNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp GGGSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSSHHHHHHH----TTTS------CEEECSCGGGTGGGCSEEEECS
T ss_pred cCCCEEEEECchHHHHHHHHHHHHcCC--EEEEEECCHHHHHHH----HHHc------CCeeehhHHhhhcCCCEEEEeC
Confidence 345799999999999999999998886 899999998766543 2211 13333355 5688999999997
Q ss_pred ccc
Q psy12825 254 GVR 256 (488)
Q Consensus 254 g~~ 256 (488)
..+
T Consensus 195 p~~ 197 (275)
T 2hk9_A 195 SVG 197 (275)
T ss_dssp STT
T ss_pred CCC
Confidence 533
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0053 Score=61.03 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=77.5
Q ss_pred ecchhHHHHH-HHH-HhhhhHHHHHHHHHHHH-hhhCCC--CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 137 GAGQVGMACT-YSI-LTQTMARDAVSTVDRLL-SQVAPS--IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 137 g~g~vg~~~a-~~~-~~k~la~eivlid~~~~-~e~~~~--~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
-.|.-+-+.| |++ ++-.+++.+...++... ++.... .....++|+|||.|.||..+|..+...|. +|..||++
T Consensus 77 ~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~ 154 (290)
T 3gvx_A 77 NAGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGM--RVIAYTRS 154 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred cCCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCc--EEEEEecc
Confidence 3344444444 333 22457777777765532 222111 34567899999999999999999887777 99999997
Q ss_pred hhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEE
Q psy12825 212 EDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCIL 290 (488)
Q Consensus 212 ~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~v 290 (488)
.+..+. +....++ +.+++||+|+++..... .++. ++ | .+.+....|.+++
T Consensus 155 ~~~~~~----------------~~~~~~l~ell~~aDiV~l~~P~t~---~t~~-li--~-------~~~l~~mk~gail 205 (290)
T 3gvx_A 155 SVDQNV----------------DVISESPADLFRQSDFVLIAIPLTD---KTRG-MV--N-------SRLLANARKNLTI 205 (290)
T ss_dssp CCCTTC----------------SEECSSHHHHHHHCSEEEECCCCCT---TTTT-CB--S-------HHHHTTCCTTCEE
T ss_pred cccccc----------------ccccCChHHHhhccCeEEEEeeccc---cchh-hh--h-------HHHHhhhhcCceE
Confidence 643211 1233455 46889999999963211 1111 11 1 1224445688999
Q ss_pred EEEe
Q psy12825 291 LIIS 294 (488)
Q Consensus 291 Iv~T 294 (488)
|+++
T Consensus 206 IN~a 209 (290)
T 3gvx_A 206 VNVA 209 (290)
T ss_dssp EECS
T ss_pred EEee
Confidence 8887
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00033 Score=71.44 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCcEEEEec-chhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 130 DQKITVVGA-GQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 130 ~~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
..||+|||+ |+||+++||+++.+++++|++++| +++.++.++
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~D 53 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEE 53 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHh
Confidence 469999998 999999999999999999999988 344444333
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0098 Score=59.93 Aligned_cols=89 Identities=12% Similarity=0.212 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHH-hhhCC-C------CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 152 QTMARDAVSTVDRLL-SQVAP-S------IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~~-~------~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
-.+++.+...+.... ++... . .....++|+|||+|.||..++..+...|. +|+.+|++.++.+.. .
T Consensus 122 L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~----~ 195 (330)
T 2gcg_A 122 LTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGV--QRFLYTGRQPRPEEA----A 195 (330)
T ss_dssp HHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTC--CEEEEESSSCCHHHH----H
T ss_pred HHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcchhHH----H
Confidence 357777777665432 22211 0 34567899999999999999999887776 899999977544321 1
Q ss_pred hcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 224 HGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 224 ~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
.. .+... ++ +.+++||+|+++..
T Consensus 196 ~~-------g~~~~-~l~e~l~~aDvVi~~vp 219 (330)
T 2gcg_A 196 EF-------QAEFV-STPELAAQSDFIVVACS 219 (330)
T ss_dssp TT-------TCEEC-CHHHHHHHCSEEEECCC
T ss_pred hc-------CceeC-CHHHHHhhCCEEEEeCC
Confidence 11 12233 55 45889999999973
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0094 Score=60.55 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHHH-HhhhCC------CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 152 QTMARDAVSTVDRL-LSQVAP------SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~------~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
-.+++.+...+... .++... ......++|+|||.|.||..+|..+...|. +|..+|++++..
T Consensus 139 L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~--------- 207 (340)
T 4dgs_A 139 LAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGM--SVRYWNRSTLSG--------- 207 (340)
T ss_dssp HHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSCCTT---------
T ss_pred HHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCcccc---------
Confidence 35777777776443 222111 134567899999999999999998876666 899999976531
Q ss_pred cCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 225 GAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 225 ~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
. ......++ +.+++||+|+++.... . .+..++. .+.+....|++++|+++.
T Consensus 208 -~------~~~~~~sl~ell~~aDvVil~vP~t----~-------~t~~li~--~~~l~~mk~gailIN~aR 259 (340)
T 4dgs_A 208 -V------DWIAHQSPVDLARDSDVLAVCVAAS----A-------ATQNIVD--ASLLQALGPEGIVVNVAR 259 (340)
T ss_dssp -S------CCEECSSHHHHHHTCSEEEECC---------------------C--HHHHHHTTTTCEEEECSC
T ss_pred -c------CceecCCHHHHHhcCCEEEEeCCCC----H-------HHHHHhh--HHHHhcCCCCCEEEECCC
Confidence 0 11223455 5689999999986211 0 1111220 122334457888888874
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0077 Score=55.94 Aligned_cols=99 Identities=21% Similarity=0.365 Sum_probs=67.3
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc-------cccCCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI-------AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~-------eal~dAD 247 (488)
++||.|+|| |.+|..++..|+..+. +|++++++++.+... . ..+. ...|+ ++++++|
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~----------~--~~~~~~~~Dl~d~~~~~~~~~~~d 69 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIKIE----------N--EHLKVKKADVSSLDEVCEVCKGAD 69 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCCCC----------C--TTEEEECCCTTCHHHHHHHHTTCS
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccchhc----------c--CceEEEEecCCCHHHHHHHhcCCC
Confidence 579999998 9999999999999886 999999987654211 0 1222 12232 3588999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+||.+++... ...+++..|+...+.+.+.+.+..... +|++|
T Consensus 70 ~vi~~a~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 111 (227)
T 3dhn_A 70 AVISAFNPGW----NNPDIYDETIKVYLTIIDGVKKAGVNR-FLMVG 111 (227)
T ss_dssp EEEECCCC----------CCSHHHHHHHHHHHHHHHTTCSE-EEEEC
T ss_pred EEEEeCcCCC----CChhHHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence 9999986432 122356678888888888888765443 55544
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.013 Score=54.32 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=60.4
Q ss_pred eEEEEec-ccchHHHHHHHH-HcCCCCeEEEEeCChh-HHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEE
Q psy12825 179 KITVVGA-GQVGMACTYSIL-TQGIYSNFCLIDSNED-RCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIV 249 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La-~~~l~~el~L~Di~~e-~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiV 249 (488)
+|.|+|| |.+|..++..|+ ..|. +|++++++++ +++... .. .....+... +|. ++++++|+|
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~~~~~~~----~~---~~~~~~~~~D~~d~~~~~~~~~~~d~v 77 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEI----ID---HERVTVIEGSFQNPGXLEQAVTNAEVV 77 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHHHSCHHH----HT---STTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccccchhhc----cC---CCceEEEECCCCCHHHHHHHHcCCCEE
Confidence 4999998 999999999999 7787 8999999887 554322 11 011122211 122 357899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++.. |+. .+.+.+.+.+..... +|++|
T Consensus 78 v~~ag~~-------------n~~-~~~~~~~~~~~~~~~-iv~iS 107 (221)
T 3r6d_A 78 FVGAMES-------------GSD-MASIVKALSRXNIRR-VIGVS 107 (221)
T ss_dssp EESCCCC-------------HHH-HHHHHHHHHHTTCCE-EEEEE
T ss_pred EEcCCCC-------------Chh-HHHHHHHHHhcCCCe-EEEEe
Confidence 9998632 334 667777777654443 55554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=96.46 E-value=0.012 Score=59.76 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHH-HcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSIL-TQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La-~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
.....++|+|||.|.||..++..+. ..|. +|+.+|++.+..+. ..++ .+....++ +.+++||+|+
T Consensus 159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~-~~~~----------g~~~~~~l~ell~~aDvVi 225 (348)
T 2w2k_A 159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGM--KLVYYDVAPADAET-EKAL----------GAERVDSLEELARRSDCVS 225 (348)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSCCCHHH-HHHH----------TCEECSSHHHHHHHCSEEE
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHhcCC--EEEEECCCCcchhh-Hhhc----------CcEEeCCHHHHhccCCEEE
Confidence 3556789999999999999999987 6665 89999998754432 1111 11223455 4588999999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 226 l~v 228 (348)
T 2w2k_A 226 VSV 228 (348)
T ss_dssp ECC
T ss_pred EeC
Confidence 996
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.012 Score=58.42 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG 245 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d 245 (488)
+..+.++|.|+|| |.+|++++..|+..|. +|+.+|++++. . ...+... +|. +.+++
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~---------~------~~~~~~~Dl~d~~~~~~~~~~ 77 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG---------T------GGEEVVGSLEDGQALSDAIMG 77 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS---------S------CCSEEESCTTCHHHHHHHHTT
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC---------C------CccEEecCcCCHHHHHHHHhC
Confidence 4456789999999 9999999999999986 89999987653 1 1122211 122 35789
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+|+||.+++..........+.+..|+.-...+.+.+.+..... +|++|
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~V~~S 125 (347)
T 4id9_A 78 VSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRR-FVFAS 125 (347)
T ss_dssp CSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred CCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence 9999999875433323335667788888888888887765444 44444
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0072 Score=60.77 Aligned_cols=72 Identities=10% Similarity=-0.014 Sum_probs=55.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
..++|+|||+|.+|..++..|.......+|.++|+++++++..+.++.... ..+. ..++ +++ ++|+||++..
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~-----~~~~-~~~~~e~v-~aDvVi~aTp 196 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG-----ISAS-VQPAEEAS-RCDVLVTTTP 196 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT-----CCEE-ECCHHHHT-SSSEEEECCC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC-----ceEE-ECCHHHHh-CCCEEEEeeC
Confidence 346899999999999998888764335689999999999988777775421 2344 5566 568 9999999863
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=57.92 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=71.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHH--cCCCCeEEEEeCChhHHHHHHHHHhhcC---CC-CCCCcEEEcCCc------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILT--QGIYSNFCLIDSNEDRCKGEMLDLQHGA---PF-LRSPKIESGSDI------ 240 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~--~~l~~el~L~Di~~e~l~g~~~dL~~~~---~~-~~~~~v~~ttd~------ 240 (488)
.+++++|.|+|| |.+|+.++..|+. .|. +|+++|++............... .. .....+. ..|.
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~ 83 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVI-AADINNPLDL 83 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSEEE-ECCTTCHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCceEE-ECCCCCHHHH
Confidence 356789999998 9999999999999 666 89999986542111100110000 00 0111222 2332
Q ss_pred -cc-cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -AM-SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -ea-l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+. ..++|+||.+++..........+.+..|+.-...+.+.+.+.... +|++|
T Consensus 84 ~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~S 137 (362)
T 3sxp_A 84 RRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYAS 137 (362)
T ss_dssp HHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEE
T ss_pred HHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeC
Confidence 12 679999999998544333445666788888888888888776543 55554
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0045 Score=65.90 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=67.8
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+|||.|+|| |.+|+.++..|+..|. +|+.++++....+. .. ... . ....+++.++|+||.+++.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~-------v~-~d~-~----~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGK-------RF-WDP-L----NPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTC-------EE-CCT-T----SCCTTTTTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccc-------ee-ecc-c----chhHHhcCCCCEEEECCCC
Confidence 789999998 9999999999999987 89999997654211 00 000 0 1123578999999999875
Q ss_pred ccCC---CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 256 RSLV---GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 256 ~~k~---G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.... .....+++..|+.-.+.+++.+.+...-..+|++|
T Consensus 212 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S 253 (516)
T 3oh8_A 212 PIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS 253 (516)
T ss_dssp -----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 4221 12344566778888888888744433223455554
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0044 Score=63.92 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=77.8
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC----hhH----HHHHHHHHhhcCCCCCCCcEEEcCCc-cccC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN----EDR----CKGEMLDLQHGAPFLRSPKIESGSDI-AMSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~----~e~----l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~ 244 (488)
..+..||+|+|||.+|..++..|...|. .+|+++|++ .++ +......+.+... . .....++ ++++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~--~---~~~~~~L~eav~ 262 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITN--P---ERLSGDLETALE 262 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC--T---TCCCSCHHHHHT
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhhh--c---cCchhhHHHHHc
Confidence 5567899999999999999999988774 689999997 655 4334444444321 1 0112345 6899
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc-hhHHHHHHHhcCCCCCcEEeec
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV-DVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv-di~t~~~~k~sg~p~~rViG~g 319 (488)
+||++|=+.+ | +. +-+++.+.|+ ++.+|+=.+||. .+..+-++++ | ..||++|
T Consensus 263 ~ADVlIG~Sa-p---~l-----------~t~emVk~Ma---~~pIIfalSNPt~E~~p~~a~~~-g---~~i~atG 316 (388)
T 1vl6_A 263 GADFFIGVSR-G---NI-----------LKPEWIKKMS---RKPVIFALANPVPEIDPELAREA-G---AFIVATG 316 (388)
T ss_dssp TCSEEEECSC-S---SC-----------SCHHHHTTSC---SSCEEEECCSSSCSSCHHHHHHT-T---CSEEEES
T ss_pred cCCEEEEeCC-C---Cc-----------cCHHHHHhcC---CCCEEEEcCCCCCCCCHHHHHHh-c---CeEEEeC
Confidence 9999887753 2 22 1133333333 566788889996 4666666664 2 3688887
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.015 Score=56.81 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=55.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc--CCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS--EGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal--~dADiVIit 252 (488)
.+.++|.|+|+|.+|..++..|+..|. +|+++|++.++++..+.++... ..+.. .+++++ .++|+||.+
T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G~--~V~v~~R~~~~~~~la~~~~~~------~~~~~-~~~~~~~~~~~DivVn~ 187 (271)
T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT------GSIQA-LSMDELEGHEFDLIINA 187 (271)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG------SSEEE-CCSGGGTTCCCSEEEEC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHhhcc------CCeeE-ecHHHhccCCCCEEEEC
Confidence 456799999999999999999999883 8999999998887766665431 02222 344444 489999999
Q ss_pred ccccc
Q psy12825 253 AGVRS 257 (488)
Q Consensus 253 ag~~~ 257 (488)
++.+.
T Consensus 188 t~~~~ 192 (271)
T 1nyt_A 188 TSSGI 192 (271)
T ss_dssp CSCGG
T ss_pred CCCCC
Confidence 87543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=56.46 Aligned_cols=101 Identities=10% Similarity=0.145 Sum_probs=65.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC-Cc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG-SR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d-AD 247 (488)
|+++||.|+|+|.+|+.++..|+..|. +|+.++++++.+. ....+... +|. +.+++ +|
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-------------~~~~~~~~Dl~d~~~~~~~~~~~~d 65 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGH--EVTGLRRSAQPMP-------------AGVQTLIADVTRPDTLASIVHLRPE 65 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTC--CEEEEECTTSCCC-------------TTCCEEECCTTCGGGCTTGGGGCCS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCccccc-------------cCCceEEccCCChHHHHHhhcCCCC
Confidence 456899999999999999999999886 8999998765421 11122211 122 24556 99
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+||.+++... ....+.+..|+...+.+.+.+.+..... +|++|
T Consensus 66 ~vih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~~-~v~~S 108 (286)
T 3gpi_A 66 ILVYCVAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQH-VFFVS 108 (286)
T ss_dssp EEEECHHHHH---HC-----CCSHHHHHHHHHHTTTSCCCE-EEEEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCCE-EEEEc
Confidence 9999986432 1223445678888888888887654443 44444
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.005 Score=59.63 Aligned_cols=74 Identities=19% Similarity=0.312 Sum_probs=54.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIES 236 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~~ 236 (488)
+..||+|||+|.+|+.++..|+..|. .+|.|+|.+. .+++..+..+.+.. +..++..
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~~~v~~ 105 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN---PHIAITP 105 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC---TTSEEEE
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC---CCcEEEE
Confidence 34699999999999999999999886 5899999987 67777777776642 1234432
Q ss_pred -cCCc------cccCCCcEEEEec
Q psy12825 237 -GSDI------AMSEGSRIVIITA 253 (488)
Q Consensus 237 -ttd~------eal~dADiVIita 253 (488)
..++ +.++++|+||.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~DvVi~~~ 129 (249)
T 1jw9_B 106 VNALLDDAELAALIAEHDLVLDCT 129 (249)
T ss_dssp ECSCCCHHHHHHHHHTSSEEEECC
T ss_pred EeccCCHhHHHHHHhCCCEEEEeC
Confidence 1111 2467999999985
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0067 Score=56.29 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=65.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC-c----cccCCCcEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD-I----AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td-~----eal~dADiV 249 (488)
|||.|+|| |.+|..++..|+..|. +|++++++++.++.. ....+... +| . ++++++|+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-----------~~~~~~~~D~~d~~~~~~~~~~~~d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVPQY-----------NNVKAVHFDVDWTPEEMAKQLHGMDAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSCCC-----------TTEEEEECCTTSCHHHHHTTTTTCSEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchhhc-----------CCceEEEecccCCHHHHHHHHcCCCEE
Confidence 58999998 9999999999998886 999999987644311 01111111 23 2 468899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
|.+++.... +.+..|+.-...+.+.+.+.... .+|++|-
T Consensus 68 i~~ag~~~~------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS 106 (219)
T 3dqp_A 68 INVSGSGGK------SLLKVDLYGAVKLMQAAEKAEVK-RFILLST 106 (219)
T ss_dssp EECCCCTTS------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred EECCcCCCC------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence 999875532 23455666666677777665433 4555553
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.029 Score=54.16 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=73.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---cc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---AM------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---ea------- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++.+.++....++.... ...++. ...|. ++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~ 104 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG---YPGTLIPYRCDLSNEEDILSMFSA 104 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CSSEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcC---CCceEEEEEecCCCHHHHHHHHHH
Confidence 45678999998 9999999999999986 89999999888776666665421 112222 22332 21
Q ss_pred ----cCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCC-CcEEEEEe
Q psy12825 243 ----SEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSP-DCILLIIS 294 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p-~a~vIv~T 294 (488)
+.+.|+||.+++..... ..+ ....+..|+.- .+.+.+.+.+... .+.||+++
T Consensus 105 ~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~is 171 (279)
T 1xg5_A 105 IRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININ 171 (279)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred HHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEc
Confidence 23799999999864321 112 22334555543 6667777766543 35677665
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0091 Score=57.81 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=51.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+. +|+|||+|.+|..++..|...+. +|.++|++.++++..+.++.. . ..++++++++|+||++..
T Consensus 115 l~~-~v~iiG~G~~g~~~a~~l~~~g~--~v~v~~r~~~~~~~l~~~~~~--------~---~~~~~~~~~~Divi~~tp 180 (263)
T 2d5c_A 115 LKG-PALVLGAGGAGRAVAFALREAGL--EVWVWNRTPQRALALAEEFGL--------R---AVPLEKAREARLLVNATR 180 (263)
T ss_dssp CCS-CEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHTC--------E---ECCGGGGGGCSEEEECSS
T ss_pred CCC-eEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcc--------c---hhhHhhccCCCEEEEccC
Confidence 456 99999999999999999988886 899999998877655443321 1 235532389999999975
Q ss_pred cc
Q psy12825 255 VR 256 (488)
Q Consensus 255 ~~ 256 (488)
.+
T Consensus 181 ~~ 182 (263)
T 2d5c_A 181 VG 182 (263)
T ss_dssp TT
T ss_pred CC
Confidence 33
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.011 Score=57.73 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=54.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-C-CCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-E-GSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~-dADiVIit 252 (488)
.+.++|.|+|+|.+|.+++..|+..| .+|+++|++.++++..+.++... . .+.. .+++++ + ++|+||.+
T Consensus 117 ~~~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~~~~a~~l~~~~~~~---~---~~~~-~~~~~~~~~~~DivIn~ 187 (272)
T 1p77_A 117 RPNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---G---NIQA-VSMDSIPLQTYDLVINA 187 (272)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---S---CEEE-EEGGGCCCSCCSEEEEC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHcccc---C---CeEE-eeHHHhccCCCCEEEEC
Confidence 45679999999999999999999888 49999999998888776666431 0 2222 234555 3 89999999
Q ss_pred cccc
Q psy12825 253 AGVR 256 (488)
Q Consensus 253 ag~~ 256 (488)
.+.+
T Consensus 188 t~~~ 191 (272)
T 1p77_A 188 TSAG 191 (272)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0088 Score=59.14 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=58.2
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC--Cc-cccCCCcEEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS--DI-AMSEGSRIVI 250 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt--d~-eal~dADiVI 250 (488)
..+.+++.|+|+|.+|.+++..|+..|. .+|.++|++.++++..+.++.... ...++.... +. +.+.++|+||
T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~---~~~~i~~~~~~~l~~~l~~~DiVI 199 (283)
T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAV---GREAVVGVDARGIEDVIAAADGVV 199 (283)
T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHH---TSCCEEEECSTTHHHHHHHSSEEE
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhc---CCceEEEcCHHHHHHHHhcCCEEE
Confidence 3456799999999999999999998775 479999999999888777776431 122343332 44 4578999999
Q ss_pred Eeccc
Q psy12825 251 ITAGV 255 (488)
Q Consensus 251 itag~ 255 (488)
.+...
T Consensus 200 naTp~ 204 (283)
T 3jyo_A 200 NATPM 204 (283)
T ss_dssp ECSST
T ss_pred ECCCC
Confidence 98643
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0094 Score=58.63 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=51.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
.++|.|+|+|.+|.++++.|+..| .+|.+++++.++++..+ ++. .... +++++.++|+||.+...
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~~ka~~la-~~~--------~~~~---~~~~l~~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSSRGLDFFQ-RLG--------CDCF---MEPPKSAFDLIINATSA 182 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTHHHHH-HHT--------CEEE---SSCCSSCCSEEEECCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH-HCC--------CeEe---cHHHhccCCEEEEcccC
Confidence 579999999999999999999888 59999999999887766 443 1111 34556699999998643
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.016 Score=52.52 Aligned_cols=101 Identities=17% Similarity=0.269 Sum_probs=64.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiV 249 (488)
.+||.|+|| |.+|..++..|+..+. +|++++++++.+.. .. .....+... +|+ +.++++|+|
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~-------~~--~~~~~~~~~D~~~~~~~~~~~~~~d~v 71 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPS-------EG--PRPAHVVVGDVLQAADVDKTVAGQDAV 71 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSCS-------SS--CCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhccc-------cc--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence 479999999 9999999999999885 99999998764321 00 111222221 122 358899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++..... +....|......+.+.+.+.... .+|++|
T Consensus 72 i~~a~~~~~~-----~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S 110 (206)
T 1hdo_A 72 IVLLGTRNDL-----SPTTVMSEGARNIVAAMKAHGVD-KVVACT 110 (206)
T ss_dssp EECCCCTTCC-----SCCCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred EECccCCCCC-----CccchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 9998754321 11124566667777777665433 345444
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.007 Score=59.57 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=56.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+.+++.|+|+|.+|.+++..|+..| +|+++|++.++++..+.++...........+..+.-.+.+.++|+||.+++
T Consensus 126 l~~k~vlV~GaGgiG~aia~~L~~~G---~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag 202 (287)
T 1nvt_A 126 VKDKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 202 (287)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCC
Confidence 45678999999999999999998877 899999999888777766643210000001222211367889999999987
Q ss_pred ccc
Q psy12825 255 VRS 257 (488)
Q Consensus 255 ~~~ 257 (488)
.+.
T Consensus 203 ~~~ 205 (287)
T 1nvt_A 203 IGM 205 (287)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0078 Score=58.89 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=68.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
++||.|+|| |.+|+.++..|+..|. +|+.++++++... +.... .....+. ..++ ++++++|+||.+++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-----~~~~~--~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA-----INDYE--YRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC----------CCE--EEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc-----CCceE--EEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 368999998 9999999999999986 8999999744322 11110 0001111 1122 46889999999987
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..... ...+.+..|+.-.+.+.+.+.+....- +|.+|
T Consensus 72 ~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~S 108 (311)
T 3m2p_A 72 TRGSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYAS 108 (311)
T ss_dssp CCCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred cCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 54332 344556778888888888888776544 44444
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.045 Score=52.36 Aligned_cols=115 Identities=8% Similarity=0.092 Sum_probs=73.2
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------- 241 (488)
.++.+++.|+|+ |.+|.+++..|+..|. +|+++|++++.++....++.... .++. ...|. +
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~ 75 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP-----GQILTVQMDVRNTDDIQKMIE 75 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST-----TCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHH
Confidence 456678889998 9999999999999987 89999999988887766665321 1222 22232 1
Q ss_pred ----ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+.-|+. ..+.+.+.+.+....+.||+++-
T Consensus 76 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS 143 (257)
T 3imf_A 76 QIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA 143 (257)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence 123789999999864321 1121 223445544 34555555544455566777753
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.054 Score=53.23 Aligned_cols=115 Identities=13% Similarity=0.196 Sum_probs=74.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----c----
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----M---- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----a---- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++.... ....+ ...| .+ .
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~-~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG---FDAHG-VVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEE-EECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CceEE-EEccCCCHHHHHHHHHHH
Confidence 45678999999 9999999999999987 89999999998887777776531 11111 1223 21 1
Q ss_pred ---cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ---SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ---l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|.++|...... .+ -...+.-|+. +.+.+.+.+.+..+.+.||+++-
T Consensus 103 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS 168 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS 168 (301)
T ss_dssp HHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred HHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence 237899999998653211 11 1233444433 45555555666554677777764
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.021 Score=57.27 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=71.9
Q ss_pred CCceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc--CCCcEEEEe
Q psy12825 176 PDQKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS--EGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal--~dADiVIit 252 (488)
.++||.|||.|.+|.+ +|..|...|. +|..+|.++... ....|.+. ...+....+++.+ .++|+||.+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~--~V~~~D~~~~~~--~~~~L~~~-----gi~v~~g~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGF--EVSGCDAKMYPP--MSTQLEAL-----GIDVYEGFDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTC--EEEEEESSCCTT--HHHHHHHT-----TCEEEESCCGGGGGSCCCSEEEEC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCC--EEEEEcCCCCcH--HHHHHHhC-----CCEEECCCCHHHcCCCCCCEEEEC
Confidence 3579999999999996 8888888887 899999864311 12234332 2345544556666 489999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhc-cCCCcEEEEEeCCch------hHHHHHHHhcCCCC
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCILLIISNPVD------VLTYISWKLSGFPK 312 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~~p~a~vIv~TNPvd------i~t~~~~k~sg~p~ 312 (488)
.+++... ........++++++.++ +.+.+ ...+..+|-+|-... ++.+++. ..|+++
T Consensus 74 pgi~~~~-p~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~-~~g~~~ 137 (326)
T 3eag_A 74 NVAKRGM-DVVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLE-YAGLAP 137 (326)
T ss_dssp TTCCTTC-HHHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHH-HTTCCC
T ss_pred CCcCCCC-HHHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHH-HcCCCc
Confidence 8776421 11111223444444332 11111 123345677776654 3444443 345554
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0051 Score=62.33 Aligned_cols=83 Identities=8% Similarity=0.178 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHH-HhhhCC-----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 153 TMARDAVSTVDRL-LSQVAP-----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~-----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
.+++.+...++.. .++... ......++|+|||+|.||..+|..+...|. +|..+|++.+...
T Consensus 134 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~---------- 201 (333)
T 3ba1_A 134 AVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDC--PISYFSRSKKPNT---------- 201 (333)
T ss_dssp HHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTC--CEEEECSSCCTTC----------
T ss_pred HHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCchhcc----------
Confidence 4777777766443 222211 134567899999999999999999887676 8999999765321
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+....++ +.+++||+|+++.
T Consensus 202 ------g~~~~~~l~ell~~aDvVil~v 223 (333)
T 3ba1_A 202 ------NYTYYGSVVELASNSDILVVAC 223 (333)
T ss_dssp ------CSEEESCHHHHHHTCSEEEECS
T ss_pred ------CceecCCHHHHHhcCCEEEEec
Confidence 01223466 4589999999996
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.058 Score=51.88 Aligned_cols=115 Identities=10% Similarity=0.138 Sum_probs=74.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.|++++.++....++..... .++. ...| .+
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~Dv~~~~~v~~~~~~ 91 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQFG----TDVHTVAIDLAEPDAPAELARR 91 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTSTTHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHHHHH
Confidence 45577888898 9999999999999987 899999999888877777754210 1121 1223 21
Q ss_pred ---ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+....+.||+++-
T Consensus 92 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 158 (266)
T 4egf_A 92 AAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVAS 158 (266)
T ss_dssp HHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 1237899999998754221 111 223444543 45566666666555667777764
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0068 Score=60.22 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=55.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|.|+|+|.+|..++..|+..|. .+|+++|++.++++..+.++.... ..+....+. +.+.++|+||.+.
T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~-~~V~v~nR~~~ka~~la~~~~~~~-----~~~~~~~~~~~~~~~aDivIn~t 212 (297)
T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAA-ERIDMANRTVEKAERLVREGDERR-----SAYFSLAEAETRLAEYDIIINTT 212 (297)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHSCSSS-----CCEECHHHHHHTGGGCSEEEECS
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhhhcc-----CceeeHHHHHhhhccCCEEEECC
Confidence 456799999999999999999988774 489999999988876665543210 022211233 5688999999997
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
+.+.
T Consensus 213 ~~~~ 216 (297)
T 2egg_A 213 SVGM 216 (297)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.016 Score=57.59 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=72.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCC--CCCcEEEc--CCc----cccCC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL--RSPKIESG--SDI----AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~--~~~~v~~t--td~----eal~d 245 (488)
+++++|.|+|| |.+|+.++..|+..|. +|+.+|++.........++....... ....+... +|. +++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence 34689999998 9999999999999886 89999985543222333333211000 01122211 122 35889
Q ss_pred CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+|+||.+++..... .....+.+..|+.-...+.+.+.+..... +|++|
T Consensus 101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~S 150 (351)
T 3ruf_A 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS-FTYAA 150 (351)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence 99999998743211 11234456778888888888888775444 44443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.025 Score=53.62 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHH-cCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----cc----
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILT-QGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----MS---- 243 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~-~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----al---- 243 (488)
+.++|.|+|| |.+|..++..|+. .|. +|++++++.+.++....++.... ....+... +|.+ .+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLR 77 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHH
Confidence 4568899998 9999999999999 786 89999999887777666665431 11222211 1221 12
Q ss_pred ---CCCcEEEEecccccCCCc------chHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeC
Q psy12825 244 ---EGSRIVIITAGVRSLVGE------TRLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISN 295 (488)
Q Consensus 244 ---~dADiVIitag~~~k~G~------~r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TN 295 (488)
.+.|+||.+++....... .-...+..|+.-...+.+.+.++. +.+.||+++-
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS 139 (276)
T 1wma_A 78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 139 (276)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence 278999999986532211 122345566665566666665542 2345666654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.054 Score=51.01 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc----CCcc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG----SDIA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t----td~e------- 241 (488)
.++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.... .....+... +|.+
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAG--QPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--SCCCEEEECCTTTCCHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcC--CCCceEEEeccccCCHHHHHHHHH
Confidence 446678999998 9999999999999987 89999999998887777776532 112222221 1211
Q ss_pred ----ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.....+ .+. ...+.-|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS 154 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRS-EDASIAFTSS 154 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSEEEEEECC
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCeEEEEcc
Confidence 1337899999998642211 111 223444443 445555555543 3456666653
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.068 Score=50.83 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.. ++. ...| .+
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~Dv~~~~~v~~~~~ 72 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIGK--------KARAIAADISDPGSVKALFA 72 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCT--------TEEECCCCTTCHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC--------ceEEEEcCCCCHHHHHHHHH
Confidence 356678999998 9999999999999987 899999999888766655521 111 1112 11
Q ss_pred ----ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 ----MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+..+.+.||+++-.
T Consensus 73 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 141 (247)
T 3rwb_A 73 EIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASN 141 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCT
T ss_pred HHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECch
Confidence 1237899999998653211 121 223444543 445555667666556777777643
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.022 Score=56.14 Aligned_cols=113 Identities=13% Similarity=0.227 Sum_probs=72.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----cccC--C
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMSE--G 245 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal~--d 245 (488)
.+++|.|+|| |.+|.+++..|+..|. +|+++|++.+.......++.... .....+. ..| . +.++ +
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~-~~Dl~d~~~~~~~~~~~~ 78 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT--GKTPAFH-ETDVSDERALARIFDAHP 78 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH--SCCCEEE-CCCTTCHHHHHHHHHHSC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc--CCCceEE-EeecCCHHHHHHHHhccC
Confidence 4579999998 9999999999999987 89999986654443334443221 0111221 223 2 2344 8
Q ss_pred CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+|+||.+++..... .....+.+..|+.-...+.+.+.+..... +|++|
T Consensus 79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-iv~~S 128 (341)
T 3enk_A 79 ITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR-IVFSS 128 (341)
T ss_dssp CCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred CcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCE-EEEEe
Confidence 99999998753211 11233556778888888888888765444 45544
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.046 Score=51.75 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=73.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++. ...|. +
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG-----GTAISVAVDVSDPESAKAMADR 79 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 45678899998 9999999999999987 89999999998887777775431 1221 12232 1
Q ss_pred ---ccCCCcEEEEecccc---cC-C--Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 242 ---MSEGSRIVIITAGVR---SL-V--GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 242 ---al~dADiVIitag~~---~k-~--G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
.+...|++|..+|.. .. + ..+ -...+..|+.- .+.+.+.+.+.. .+.||+++-..
T Consensus 80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~ 150 (253)
T 3qiv_A 80 TLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTA 150 (253)
T ss_dssp HHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC--
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCcc
Confidence 123789999999862 11 1 112 22345556543 556666665543 45677776443
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.059 Score=51.48 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=72.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|+ |.+|.+++..|+..|. +|++.|++.+.++....++... ... ...| .+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~-~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGPA------AYA-VQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTT------EEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCC------ceE-EEeeCCCHHHHHHHHHHH
Confidence 45578999998 9999999999999987 8999999998887666665321 111 1122 21
Q ss_pred --ccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.+.|++|..+|...... .+ -...+..|+. +.+.+.+.+.+..+.+.||+++-
T Consensus 77 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS 142 (259)
T 4e6p_A 77 VEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMAS 142 (259)
T ss_dssp HHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 1238999999998643211 11 1233445543 45555566655554667777764
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.017 Score=56.87 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
++|||.|+|| |.+|++++..|+..|. +|+++|++.+..+. +.+. ...+... +|. ++++++|+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----l~~~-----~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQR----LAYL-----EPECRVAEMLDHAGLERALRGLDG 80 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGGG----GGGG-----CCEEEECCTTCHHHHHHHTTTCSE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhhh----hccC-----CeEEEEecCCCHHHHHHHHcCCCE
Confidence 3469999998 9999999999999886 89999997654321 2211 1122211 122 35889999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..........+.+..|+.-...+.+.+.+..... +|++|
T Consensus 81 vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~v~~S 125 (342)
T 2x4g_A 81 VIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPR-ILYVG 125 (342)
T ss_dssp EEEC------------CHHHHHHHHHHHHHHHHHHHTCSC-EEEEC
T ss_pred EEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence 9999875432122344566778888888888877764333 55554
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.012 Score=59.14 Aligned_cols=116 Identities=12% Similarity=0.137 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC--CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS--IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF 228 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~--~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~ 228 (488)
-.+++.+...+... .++.... .....++|+|||.|.+|..+|..+..-|. +|..||++++..++ +
T Consensus 111 L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~----~------ 178 (315)
T 3pp8_A 111 LHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGF--PLRCWSRSRKSWPG----V------ 178 (315)
T ss_dssp HHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTTTC--CEEEEESSCCCCTT----C------
T ss_pred HHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEcCCchhhhh----h------
Confidence 35778887777543 2222111 34567899999999999999998876665 89999987643211 0
Q ss_pred CCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 229 LRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 229 ~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.......++ +.+++||+|+++.... .+...++ | .+.+....|.+++|+++.
T Consensus 179 ---~~~~~~~~l~ell~~aDiV~l~~Plt----~~t~~li--~-------~~~l~~mk~gailIN~aR 230 (315)
T 3pp8_A 179 ---ESYVGREELRAFLNQTRVLINLLPNT----AQTVGII--N-------SELLDQLPDGAYVLNLAR 230 (315)
T ss_dssp ---EEEESHHHHHHHHHTCSEEEECCCCC----GGGTTCB--S-------HHHHTTSCTTEEEEECSC
T ss_pred ---hhhcccCCHHHHHhhCCEEEEecCCc----hhhhhhc--c-------HHHHhhCCCCCEEEECCC
Confidence 011111344 4688999999986211 0111111 1 123444567899999874
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.064 Score=50.45 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=71.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----c--
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----M-- 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----a-- 242 (488)
.++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++... .++. ...|. + .
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~ 74 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP------DQIQFFQHDSSDEDGWTKLFD 74 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT------TTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc------CceEEEECCCCCHHHHHHHHH
Confidence 356678999998 9999999999999986 8999999988776555554321 1221 12232 1 1
Q ss_pred -----cCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 -----SEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 -----l~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+...|+||.+++..... ..+ ....+..|+. ..+.+.+.+.+......+|+++..
T Consensus 75 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 143 (251)
T 1zk4_A 75 ATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI 143 (251)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence 23589999999864321 112 2334555654 445555555554332567776643
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.019 Score=56.44 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=54.3
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc--CCCcEEEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS--EGSRIVII 251 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal--~dADiVIi 251 (488)
..+.+++.|+|+|.+|.+++..|+..|. .+|++++++.++++..+.++.. ..+... +++++ .++|+||.
T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~-------~~~~~~-~~~~l~~~~~DivIn 187 (272)
T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGP-SELVIANRDMAKALALRNELDH-------SRLRIS-RYEALEGQSFDIVVN 187 (272)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHCC-------TTEEEE-CSGGGTTCCCSEEEE
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhcc-------CCeeEe-eHHHhcccCCCEEEE
Confidence 3467899999999999999999998774 4899999999988877766643 122221 23333 78999999
Q ss_pred eccc
Q psy12825 252 TAGV 255 (488)
Q Consensus 252 tag~ 255 (488)
+...
T Consensus 188 aTp~ 191 (272)
T 3pwz_A 188 ATSA 191 (272)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8643
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0013 Score=66.54 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=31.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 129 PDQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
++.||+|||+|+||++++|.++.+++.+|++++|
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~D 41 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVD 41 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEe
Confidence 4469999999999999999999999999999988
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.079 Score=51.43 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=73.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----c----
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----M---- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----a---- 242 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.... ..... ...| .+ .
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dl~d~~~v~~~~~~~ 103 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG---GKALP-IRCDVTQPDQVRGMLDQM 103 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT---CCCEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEE-EEcCCCCHHHHHHHHHHH
Confidence 45678999998 9999999999999987 89999999988887777776531 11122 1223 21 1
Q ss_pred ---cCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 ---SEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 ---l~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+....+.||+++
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~is 168 (276)
T 3r1i_A 104 TGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTA 168 (276)
T ss_dssp HHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 237899999998653221 122 223344543 4555666666554446677765
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.014 Score=56.10 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
++++|.|+|| |.+|..++..|+..+. +|++.|++++... .....+... +|. +.+++.|+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~D~ 67 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMVAGCDG 67 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHHcCCCE
Confidence 4568999998 9999999999998886 8999999764332 001111111 122 35789999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++.... ....+++..|+.-...+.+.+.+..... +|++|
T Consensus 68 vi~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~~-iv~~S 110 (267)
T 3rft_A 68 IVHLGGISVE--KPFEQILQGNIIGLYNLYEAARAHGQPR-IVFAS 110 (267)
T ss_dssp EEECCSCCSC--CCHHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred EEECCCCcCc--CCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 9999986421 2334566778887778888877765444 55554
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.066 Score=51.27 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---cc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---AM------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---ea------- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... ...++. ...|. ++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~D~~~~~~v~~~~~~ 79 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF---EPQKTLFIQCDVADQQQLRDTFRK 79 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhc---CCCceEEEecCCCCHHHHHHHHHH
Confidence 34568999998 9999999999999986 89999999887765555554321 011222 22232 11
Q ss_pred ----cCCCcEEEEecccccCCCcchHhhHhhhHH----HHHHHHHHHhccC--CCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLVGETRLQLVDRNVK----IFKDLIPKIAKGS--PDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~G~~r~dll~~N~~----ii~ei~~~I~~~~--p~a~vIv~TN 295 (488)
+...|++|..+|.... ....+.+..|+. ..+.+.+.+.+.. +.+.||+++-
T Consensus 80 ~~~~~g~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS 140 (267)
T 2gdz_A 80 VVDHFGRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 140 (267)
T ss_dssp HHHHHSCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence 2357999999986432 223344555544 5566677776543 2466777764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.09 Score=50.20 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=73.8
Q ss_pred CCCCceEEEEec-c-cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---cc-----
Q psy12825 174 ESPDQKITVVGA-G-QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---AM----- 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G-~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---ea----- 242 (488)
.++.++|.|+|+ | .+|..++..|+..|. +|+++|++.+.++....++.... ..++. ...|. ++
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG----LGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC----SSCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC----CCceEEEEeCCCCHHHHHHHH
Confidence 345678999999 7 599999999999987 89999999988887777775431 11222 22232 11
Q ss_pred ------cCCCcEEEEecccccCCC---cch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ------SEGSRIVIITAGVRSLVG---ETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ------l~dADiVIitag~~~k~G---~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|++|..+|...... .+. ...+..|+ .+.+.+.+.+.+....+.||+++-
T Consensus 93 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 161 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS 161 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred HHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 236799999998643221 122 22344443 344555556665545666777653
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.11 Score=49.96 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=72.1
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------ 241 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------ 241 (488)
..++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++. ...|. +
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~~~~~v~~~~ 99 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG-----AKVHTFVVDCSNREDIYSSA 99 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC-----CeEEEEEeeCCCHHHHHHHH
Confidence 3456678999998 9999999999999986 89999999887776666665421 1221 12232 1
Q ss_pred -----ccCCCcEEEEecccccCCC---cc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 -----MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~G---~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+.+.|+||.++|...... .+ ..+.+..|+.- .+.+.+.+.+. ..+.+|+++-.
T Consensus 100 ~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~ 168 (272)
T 1yb1_A 100 KKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASA 168 (272)
T ss_dssp HHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCC
T ss_pred HHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEech
Confidence 1237899999998653211 11 12334455443 44444444443 34567776643
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.069 Score=51.17 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=71.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---cc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---AM------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---ea------- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... . ..++. ...|. ++
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~D~~~~~~v~~~~~~ 85 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETA--P-DAEVLTTVADVSDEAQVEAYVTA 85 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHC--T-TCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc--C-CceEEEEEccCCCHHHHHHHHHH
Confidence 45678999998 9999999999999986 89999999988876666665431 0 11222 22232 21
Q ss_pred ----cCCCcEEEEecccccC--C--Ccc---hHhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSL--V--GET---RLQLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k--~--G~~---r~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|++|..+|.... + ..+ ....+..|+ ...+.+.+.+.+.. .+.||+++-
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 152 (267)
T 1iy8_A 86 TTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS 152 (267)
T ss_dssp HHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence 2368999999986532 1 111 122344454 24455666665543 355666653
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.052 Score=50.60 Aligned_cols=109 Identities=10% Similarity=0.005 Sum_probs=68.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
+++++|.|+|| |.+|..++..|+..+...+|++++++++.++. +.. ...+... +|. +.++++|
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~----~~~------~~~~~~~D~~d~~~~~~~~~~~d 71 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK----IGG------EADVFIGDITDADSINPAFQGID 71 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH----TTC------CTTEEECCTTSHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh----cCC------CeeEEEecCCCHHHHHHHHcCCC
Confidence 35679999998 99999999999998422389999998765532 211 1122221 232 3578999
Q ss_pred EEEEecccccC------------CCcc---hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 248 IVIITAGVRSL------------VGET---RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k------------~G~~---r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+||.+++.... +... ..+.+..|+.....+++.+.+.... .+|++|
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S 132 (253)
T 1xq6_A 72 ALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG 132 (253)
T ss_dssp EEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred EEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence 99999875321 1110 0123456777777777777766443 355554
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.024 Score=55.99 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=54.9
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIit 252 (488)
..+.++|.|+|+|.+|..++..|+..|. .+|.+++++.++++..+.++.... .+... +++++ .++|+||.+
T Consensus 123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~-~~v~v~~R~~~~a~~la~~~~~~~------~~~~~-~~~~l~~~aDiIIna 194 (281)
T 3o8q_A 123 LLKGATILLIGAGGAARGVLKPLLDQQP-ASITVTNRTFAKAEQLAELVAAYG------EVKAQ-AFEQLKQSYDVIINS 194 (281)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTCC-SEEEEEESSHHHHHHHHHHHGGGS------CEEEE-EGGGCCSCEEEEEEC
T ss_pred CccCCEEEEECchHHHHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhccC------CeeEe-eHHHhcCCCCEEEEc
Confidence 3466899999999999999999988764 489999999998888777776421 12221 23333 789999998
Q ss_pred ccc
Q psy12825 253 AGV 255 (488)
Q Consensus 253 ag~ 255 (488)
...
T Consensus 195 Tp~ 197 (281)
T 3o8q_A 195 TSA 197 (281)
T ss_dssp SCC
T ss_pred CcC
Confidence 643
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.022 Score=57.53 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHH-hhhCC------C----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH
Q psy12825 152 QTMARDAVSTVDRLL-SQVAP------S----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML 220 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~~------~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~ 220 (488)
-.+++.+...+.... ++... . .....++|+|||.|.||..++..+...|. +|..+|++.+. + ...
T Consensus 110 L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~--~V~~~d~~~~~-~-~~~ 185 (333)
T 2d0i_A 110 INLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV--KLYYWSRHRKV-N-VEK 185 (333)
T ss_dssp HHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTC--EEEEECSSCCH-H-HHH
T ss_pred HHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCC--EEEEECCCcch-h-hhh
Confidence 357788877765432 21211 0 24567899999999999999998877776 89999998764 2 111
Q ss_pred HHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 221 DLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 221 dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
+. .+... ++ +.+++||+|++++.
T Consensus 186 ~~----------g~~~~-~l~e~l~~aDiVil~vp 209 (333)
T 2d0i_A 186 EL----------KARYM-DIDELLEKSDIVILALP 209 (333)
T ss_dssp HH----------TEEEC-CHHHHHHHCSEEEECCC
T ss_pred hc----------Cceec-CHHHHHhhCCEEEEcCC
Confidence 11 12222 55 45889999999963
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.042 Score=51.77 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----cc---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MS--- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al--- 243 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... ....+ ...| ++ .+
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~~~~~~~~~ 82 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG---GQAFA-CRCDITSEQELSALADFA 82 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC---CceEE-EEcCCCCHHHHHHHHHHH
Confidence 45678999998 9999999999999886 89999999887776666665421 11111 1223 21 12
Q ss_pred ----CCCcEEEEecccccCC--Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 ----EGSRIVIITAGVRSLV--GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ----~dADiVIitag~~~k~--G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.|+||.+++..... ..+ ....+..|+.- .+.+.+.+.+.. ...+|+++-
T Consensus 83 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS 146 (255)
T 1fmc_A 83 ISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS 146 (255)
T ss_dssp HHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence 3899999998864321 122 22334455543 344444444433 355666653
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.059 Score=52.13 Aligned_cols=116 Identities=21% Similarity=0.290 Sum_probs=72.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc---c----c---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI---A----M--- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~---e----a--- 242 (488)
.+.++|.|+|+ |.+|.+++..|+..|. +|+++|++++.++....++..... ...++.. ..|. + .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGA--NGGAIRYEPTDITNEDETARAVDA 84 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCC--SSCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC--CCceEEEEeCCCCCHHHHHHHHHH
Confidence 45678999998 9999999999999987 899999999988887777765321 1113322 2232 1 1
Q ss_pred ----cCCCcEEEEecccccCCC----cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLVG----ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~G----~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|++|..+|.....+ .+ -...+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 85 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS 151 (281)
T 3svt_A 85 VTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRG-GGGSFVGISS 151 (281)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEeC
Confidence 236799999998632211 11 1234455654 344444454433 3566777753
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.064 Score=51.35 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++.+.++....++.... .++. ...|. +
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG-----VEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-----SCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHHH
Confidence 45678999998 9999999999999986 89999999888876666665321 1221 12232 1
Q ss_pred ---ccCCCcEEEEecccc-cC-C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVR-SL-V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~-~k-~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.. .. + ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 144 (262)
T 1zem_A 78 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTAS 144 (262)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence 123789999999864 21 1 1111 223444543 3444455554432 356776653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.066 Score=50.63 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=54.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----cc---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MS--- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al--- 243 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.... ....+. ..| .+ .+
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~-~~D~~~~~~~~~~~~~~ 84 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG---HDVSSV-VMDVTNTESVQNAVRSV 84 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEE-ECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEE-EecCCCHHHHHHHHHHH
Confidence 34578999998 9999999999999986 89999999887776666665421 111111 223 22 12
Q ss_pred ----CCCcEEEEeccccc
Q psy12825 244 ----EGSRIVIITAGVRS 257 (488)
Q Consensus 244 ----~dADiVIitag~~~ 257 (488)
.+.|+||.+++...
T Consensus 85 ~~~~~~id~vi~~Ag~~~ 102 (260)
T 3awd_A 85 HEQEGRVDILVACAGICI 102 (260)
T ss_dssp HHHHSCCCEEEECCCCCC
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 37899999998653
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0078 Score=60.48 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=76.0
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccC
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSE 244 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~ 244 (488)
..++.++|.|+|| |.+|..++..|+.. |. .+|++++++++.+.....++.. ...++... +|+ ++++
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~v~~~~~Dl~d~~~l~~~~~ 90 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND-----PRMRFFIGDVRDLERLNYALE 90 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC-----TTEEEEECCTTCHHHHHHHTT
T ss_pred HhhCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC-----CCEEEEECCCCCHHHHHHHHh
Confidence 3456789999998 99999999999988 63 3899999998776654444431 11122111 232 3588
Q ss_pred CCcEEEEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||.+++....+. ....+.+..|+.-...+++...+..... +|++|
T Consensus 91 ~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~-~V~~S 141 (344)
T 2gn4_A 91 GVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQ-VIALS 141 (344)
T ss_dssp TCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEC
T ss_pred cCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCE-EEEec
Confidence 9999999987543211 1234566778887788888877765333 55554
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0013 Score=66.26 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=30.9
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|+||.+++|.++.+++.+|++++|
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~D 37 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD 37 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEe
Confidence 69999999999999999999999999999988
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0073 Score=60.62 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=53.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
.++|+|||+|.+|...+..|.......+|.++|++ +.+..+.++.+.. ...+... ++ +++++||+||.+..
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~----g~~~~~~-~~~eav~~aDIVi~aT~ 192 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC----GVPARMA-APADIAAQADIVVTATR 192 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH----TSCEEEC-CHHHHHHHCSEEEECCC
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc----CCeEEEe-CHHHHHhhCCEEEEccC
Confidence 46899999999999988888764336799999998 5666666665431 1244555 76 57899999999864
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.13 Score=49.47 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC------------hhHHHHHHHHHhhcCCCCCCCcEE-EcCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN------------EDRCKGEMLDLQHGAPFLRSPKIE-SGSD 239 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~------------~e~l~g~~~dL~~~~~~~~~~~v~-~ttd 239 (488)
.++.+++.|+|+ |.+|.+++..|+..|. +|+++|++ .+.++....++.... .++. ...|
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D 82 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-----SRIVARQAD 82 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-----CCEEEEECC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC-----CeEEEEeCC
Confidence 345678999998 9999999999999987 89999987 666665555554431 1222 1223
Q ss_pred ---cc----c-------cCCCcEEEEecccccCCC-c-chHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 240 ---IA----M-------SEGSRIVIITAGVRSLVG-E-TRLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 240 ---~e----a-------l~dADiVIitag~~~k~G-~-~r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+ . +...|++|..+|...... . .-...+..|+. +.+.+.+.+.+....+.||+++-
T Consensus 83 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 158 (278)
T 3sx2_A 83 VRDRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS 158 (278)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 21 1 237899999998653221 1 12233444543 45555666666555677777763
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0032 Score=59.13 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC------c-cccCCCc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD------I-AMSEGSR 247 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd------~-eal~dAD 247 (488)
+.++|.|+|| |.+|..++..|+..|...+|+++|++++.++... .. ...+. ..| . +.++++|
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--~~-------~~~~~-~~D~~d~~~~~~~~~~~d 86 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--YK-------NVNQE-VVDFEKLDDYASAFQGHD 86 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--GG-------GCEEE-ECCGGGGGGGGGGGSSCS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--cC-------CceEE-ecCcCCHHHHHHHhcCCC
Confidence 3578999998 9999999999999886558999999775432110 00 01111 122 2 3578999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+||.+++.... .....+++..|+.-...+.+.+.+.... .+|++|
T Consensus 87 ~vi~~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~S 131 (242)
T 2bka_A 87 VGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLS 131 (242)
T ss_dssp EEEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred EEEECCCcccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEc
Confidence 99999875321 1122345566777667777777665433 455554
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.11 Score=50.08 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-------------ChhHHHHHHHHHhhcCCCCCCCcEE-EcC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-------------NEDRCKGEMLDLQHGAPFLRSPKIE-SGS 238 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-------------~~e~l~g~~~dL~~~~~~~~~~~v~-~tt 238 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|+++|+ +++.++....++.... .++. ...
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 84 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG-----RKALTRVL 84 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT-----CCEEEEEC
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC-----CeEEEEEc
Confidence 456678899998 9999999999999987 8999998 6677776666665421 1221 222
Q ss_pred Cc---c-----------ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 239 DI---A-----------MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 239 d~---e-----------al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|. + .+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+....+.||+++
T Consensus 85 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~is 164 (280)
T 3pgx_A 85 DVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVS 164 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 32 1 1347899999998653211 121 223444543 4566666666655466677776
Q ss_pred C
Q psy12825 295 N 295 (488)
Q Consensus 295 N 295 (488)
-
T Consensus 165 S 165 (280)
T 3pgx_A 165 S 165 (280)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.008 Score=59.34 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=47.3
Q ss_pred CCCCCceEEEEecccchHH-HHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEE
Q psy12825 173 IESPDQKITVVGAGQVGMA-CTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIV 249 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiV 249 (488)
+.|+++||+|||+|.+|.. ++..+...+- .+|+ ++|+++++++..+....- . ..+|++ .++++|+|
T Consensus 2 ~~M~~~~igiIG~G~~g~~~~~~~l~~~~~-~~l~av~d~~~~~~~~~a~~~~~--------~--~~~~~~~ll~~~D~V 70 (308)
T 3uuw_A 2 NAMKNIKMGMIGLGSIAQKAYLPILTKSER-FEFVGAFTPNKVKREKICSDYRI--------M--PFDSIESLAKKCDCI 70 (308)
T ss_dssp ---CCCEEEEECCSHHHHHHTHHHHTSCSS-SEEEEEECSCHHHHHHHHHHHTC--------C--BCSCHHHHHTTCSEE
T ss_pred CccccCcEEEEecCHHHHHHHHHHHHhCCC-eEEEEEECCCHHHHHHHHHHcCC--------C--CcCCHHHHHhcCCEE
Confidence 3467789999999999985 6666654332 2555 899999888765544321 1 145774 46699999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
+++.
T Consensus 71 ~i~t 74 (308)
T 3uuw_A 71 FLHS 74 (308)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9985
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0024 Score=65.09 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=46.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc----cccCCCcEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI----AMSEGSRIVI 250 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~----eal~dADiVI 250 (488)
+.|||.|+|||.||+.++..|... . +|.+.|++.++++.. .+.. ..+.. .+|. +.++++|+||
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~-~--~v~~~~~~~~~~~~~----~~~~-----~~~~~d~~d~~~l~~~~~~~DvVi 82 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE-F--DVYIGDVNNENLEKV----KEFA-----TPLKVDASNFDKLVEVMKEFELVI 82 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT-S--EEEEEESCHHHHHHH----TTTS-----EEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CccEEEEECCCHHHHHHHHHHhcC-C--CeEEEEcCHHHHHHH----hccC-----CcEEEecCCHHHHHHHHhCCCEEE
Confidence 567999999999999998887543 3 899999998877643 1111 11211 1233 3579999999
Q ss_pred Eecc
Q psy12825 251 ITAG 254 (488)
Q Consensus 251 itag 254 (488)
.+.+
T Consensus 83 ~~~p 86 (365)
T 3abi_A 83 GALP 86 (365)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9863
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.12 Score=48.94 Aligned_cols=112 Identities=15% Similarity=0.251 Sum_probs=71.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea------- 242 (488)
++.+++.|+|| |.+|..++..|+..|. +|++.|++.+.++....++.... .++. ...| .++
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~~~~~~~~~~~~ 77 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG-----AKVHVLELDVADRQGVDAAVAS 77 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 45678999998 9999999999999987 89999999988877666665421 1221 1223 211
Q ss_pred ----cCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+.. +.||+++-
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS 142 (247)
T 2jah_A 78 TVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS 142 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence 24789999999865321 1222 223444543 3444555554433 56777763
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.097 Score=49.40 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=66.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA---------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e---------- 241 (488)
++++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++.... .. ...| .+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~------~~-~~~D~~~~~~v~~~~~~~~ 72 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGNAV------IG-IVADLAHHEDVDVAFAAAV 72 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGE------EE-EECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCc------eE-EECCCCCHHHHHHHHHHHH
Confidence 4567899998 9999999999999987 89999999988877666653211 11 1122 11
Q ss_pred -ccCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEe
Q psy12825 242 -MSEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 -al~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~T 294 (488)
.+...|++|..+|..... ..+ -...+.-|+.- .+.+.+.+.+.. +.||+++
T Consensus 73 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~iv~is 134 (235)
T 3l6e_A 73 EWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG--GVLANVL 134 (235)
T ss_dssp HHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEEEEC
T ss_pred HhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEEe
Confidence 123679999999874321 112 22345556543 344555554432 3566664
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.064 Score=51.05 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=69.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++.. ++. ...|. +
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~D~~~~~~v~~~~~~ 73 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGE--------RSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCT--------TEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC--------ceEEEEccCCCHHHHHHHHHH
Confidence 45678899998 9999999999999986 899999998877665555411 111 12232 1
Q ss_pred ---ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|.++|..... ..+. ...+..|+. ..+.+.+.+.+.. +.||+++-
T Consensus 74 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS 138 (253)
T 1hxh_A 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS 138 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence 123569999999864321 1122 233455543 4556666666543 66777764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.12 Score=49.95 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC----------------hhHHHHHHHHHhhcCCCCCCCcEE-
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN----------------EDRCKGEMLDLQHGAPFLRSPKIE- 235 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~----------------~e~l~g~~~dL~~~~~~~~~~~v~- 235 (488)
..+.+++.|+|+ |.+|..++..|+..|. +|+++|++ .+.++....++.... .++.
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 80 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-----RRIVT 80 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-----CCEEE
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-----CceEE
Confidence 345678999998 8999999999999987 89999987 566665555554321 1222
Q ss_pred EcCC---cc-----------ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEE
Q psy12825 236 SGSD---IA-----------MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCIL 290 (488)
Q Consensus 236 ~ttd---~e-----------al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~v 290 (488)
...| ++ .+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+....+.|
T Consensus 81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~i 160 (286)
T 3uve_A 81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSI 160 (286)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEE
Confidence 2223 21 1237899999998653321 122 223444543 455566666655555677
Q ss_pred EEEeC
Q psy12825 291 LIISN 295 (488)
Q Consensus 291 Iv~TN 295 (488)
|+++-
T Consensus 161 v~isS 165 (286)
T 3uve_A 161 ILTSS 165 (286)
T ss_dssp EEECC
T ss_pred EEECc
Confidence 77764
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.014 Score=59.03 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=49.2
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|||+|.||..++..+...|. +|+.+|++.+. + ...+. . +.. .++ +.+++||+|+++
T Consensus 147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~-~-~~~~~--g--------~~~-~~l~~~l~~aDvVil~ 211 (334)
T 2dbq_A 147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM--RILYYSRTRKE-E-VEREL--N--------AEF-KPLEDLLRESDFVVLA 211 (334)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCH-H-HHHHH--C--------CEE-CCHHHHHHHCSEEEEC
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCCC--EEEEECCCcch-h-hHhhc--C--------ccc-CCHHHHHhhCCEEEEC
Confidence 4567899999999999999999987776 89999998765 2 11111 0 122 355 458899999999
Q ss_pred cc
Q psy12825 253 AG 254 (488)
Q Consensus 253 ag 254 (488)
..
T Consensus 212 vp 213 (334)
T 2dbq_A 212 VP 213 (334)
T ss_dssp CC
T ss_pred CC
Confidence 73
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.033 Score=53.52 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=49.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCccccCCCcEEEEecc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIAMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~eal~dADiVIitag 254 (488)
++||.|+|||.+|+.++..|+..|. +|+.++++++...... .. ..++... +|++ ++++|+||.+++
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~----~~-----~~~~~~~D~~d~~-~~~~d~vi~~a~ 72 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGW--RIIGTSRNPDQMEAIR----AS-----GAEPLLWPGEEPS-LDGVTHLLISTA 72 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHH----HT-----TEEEEESSSSCCC-CTTCCEEEECCC
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHh----hC-----CCeEEEecccccc-cCCCCEEEECCC
Confidence 4799999999999999999998886 8999999887654321 11 0111111 1234 889999999986
Q ss_pred cc
Q psy12825 255 VR 256 (488)
Q Consensus 255 ~~ 256 (488)
..
T Consensus 73 ~~ 74 (286)
T 3ius_A 73 PD 74 (286)
T ss_dssp CB
T ss_pred cc
Confidence 43
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.029 Score=55.62 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=69.3
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc--cccCCCcE
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI--AMSEGSRI 248 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~--eal~dADi 248 (488)
..+++++|.|+|| |.+|+.++..|+..|. +|+++|++...... .+.+.. ...++. ...|. .++.++|+
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~---~~~~~~---~~~~~~~~~~D~~~~~~~~~d~ 94 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKR---NVEHWI---GHENFELINHDVVEPLYIEVDQ 94 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG---GTGGGT---TCTTEEEEECCTTSCCCCCCSE
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchh---hhhhhc---cCCceEEEeCccCChhhcCCCE
Confidence 4456789999999 9999999999999886 89999985431111 111111 011222 22343 46789999
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..... .....+.+..|+.-...+.+.+.+... .+|++|
T Consensus 95 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S 140 (343)
T 2b69_A 95 IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS 140 (343)
T ss_dssp EEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred EEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence 99998753211 122345567788877888888777653 455554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0024 Score=65.81 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=34.7
Q ss_pred CCcEEEEe-cchhHHHHHHHHHhhhhHHH---HHHH--H-----HHHHhhhCCC
Q psy12825 130 DQKITVVG-AGQVGMACTYSILTQTMARD---AVST--V-----DRLLSQVAPS 172 (488)
Q Consensus 130 ~~ki~vvg-~g~vg~~~a~~~~~k~la~e---ivli--d-----~~~~~e~~~~ 172 (488)
..||+||| +|+||+++||+|+.+++++| ++++ | +++.++.||.
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL 85 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMEL 85 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhH
Confidence 36999999 79999999999999999998 6552 2 3466766654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.094 Score=50.29 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=72.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.+++.|+|+ |.+|.+++..|+..|. +|++.|++++.++....++.... ..++. ...|. +
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG----SGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS----SSCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC----CCcEEEEEcCCCCHHHHHHHHHH
Confidence 45678888898 9999999999999987 89999999998888777776531 11222 22232 1
Q ss_pred ---ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+... +.||+++-
T Consensus 82 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS 147 (262)
T 3pk0_A 82 AVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGS-GRVVLTSS 147 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSS-CEEEEECC
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEec
Confidence 123789999999864321 1222 223444543 44555555554433 45666653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.057 Score=51.68 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---cc------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---AM------ 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---ea------ 242 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++.... .++. ...|. ++
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~ 98 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG-----GEAESHACDLSHSDAIAAFAT 98 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHH
Confidence 455678999998 9999999999999987 89999999998887777776431 1222 12232 11
Q ss_pred -----cCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 -----SEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 -----l~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+...|+||.++|.....+ .+. .+.+..|+. +.+.+.+.+.+. ..+.||+++-.
T Consensus 99 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~ 167 (262)
T 3rkr_A 99 GVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSL 167 (262)
T ss_dssp HHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSS
T ss_pred HHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEech
Confidence 235899999998632211 111 223444443 344455545443 34567777643
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.17 Score=48.15 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=70.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++. ...|. +
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 79 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG-----FKVEASVCDLSSRSERQELMNT 79 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 45678999998 9999999999999986 89999999888776666665321 1221 12232 1
Q ss_pred ---cc-CCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MS-EGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al-~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+ ...|++|..+|...... .+ ....+..|+. +.+...+.+.+. ..+.||+++-
T Consensus 80 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS 146 (260)
T 2ae2_A 80 VANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS 146 (260)
T ss_dssp HHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred HHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 12 57999999998653211 11 2233445544 334444444443 3456777654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=57.00 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
|+++||+|+|+|.||+.++..+...+. +|+ .+|++.+. +. .+..++|++++.++|+||-.
T Consensus 1 M~MmkI~ViGaGrMG~~i~~~l~~~~~--eLva~~d~~~~~---------~~-------gv~v~~dl~~l~~~DVvIDf 61 (243)
T 3qy9_A 1 MASMKILLIGYGAMNQRVARLAEEKGH--EIVGVIENTPKA---------TT-------PYQQYQHIADVKGADVAIDF 61 (243)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC--EEEEEECSSCC-----------C-------CSCBCSCTTTCTTCSEEEEC
T ss_pred CCceEEEEECcCHHHHHHHHHHHhCCC--EEEEEEecCccc---------cC-------CCceeCCHHHHhCCCEEEEe
Confidence 357899999999999999988887765 555 57987651 11 12234677554499998854
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0016 Score=65.38 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=30.6
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|+||++++|.++.+++.+|++++|
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~D 32 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVD 32 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 49999999999999999999999999999988
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.2 Score=47.90 Aligned_cols=114 Identities=14% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.... . ..++. ...|. +
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~~Dv~~~~~v~~~~~~ 80 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRF--P-GARLFASVCDVLDALQVRAFAEA 80 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHS--T-TCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc--C-CceEEEEeCCCCCHHHHHHHHHH
Confidence 45678899998 9999999999999987 89999999998887777776532 1 11122 22232 1
Q ss_pred ---ccCCCcEEEEecccccC-C--Ccch---HhhHhhhHHH----HHHHHHHHhccCCCcEEEEEe
Q psy12825 242 ---MSEGSRIVIITAGVRSL-V--GETR---LQLVDRNVKI----FKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 ---al~dADiVIitag~~~k-~--G~~r---~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~T 294 (488)
.+...|++|..+|.... + ..+. ...+..|+.- .+.+.+.+.+. ..+.||+++
T Consensus 81 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~is 145 (265)
T 3lf2_A 81 CERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESR-ADAAIVCVN 145 (265)
T ss_dssp HHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTEEEEEEE
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEC
Confidence 13467999999986432 1 1222 2335556543 34444444443 345666665
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.16 Score=48.90 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=72.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC------------hhHHHHHHHHHhhcCCCCCCCcEE-EcCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN------------EDRCKGEMLDLQHGAPFLRSPKIE-SGSD 239 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~------------~e~l~g~~~dL~~~~~~~~~~~v~-~ttd 239 (488)
.++.++|.|+|+ |.+|.+++..|+..|. +|+++|++ .+.++....++.... .++. ...|
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D 79 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-----RKAYTAEVD 79 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-----SCEEEEECC
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC-----CceEEEEcc
Confidence 345678999998 8999999999999987 89999987 566665555554421 1221 1223
Q ss_pred c---c-----------ccCCCcEEEEecccccCC-Ccc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 240 I---A-----------MSEGSRIVIITAGVRSLV-GET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 240 ~---e-----------al~dADiVIitag~~~k~-G~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
. + .+...|++|..+|..... ..+ -...+..|+.-...+.+.+..+ ...+.||+++-
T Consensus 80 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 154 (287)
T 3pxx_A 80 VRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS 154 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence 2 1 123789999999865322 122 2344566666555566665554 34566777764
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.017 Score=56.15 Aligned_cols=69 Identities=25% Similarity=0.412 Sum_probs=49.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+. +|.|||+|.+|.+++..|+..|. .+|.++|++.++++. +.+. .......+. +.++++|+||.+.
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~-~~I~v~nR~~~ka~~----la~~------~~~~~~~~~~~~~~~aDiVInat 174 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGV-KDIWVVNRTIERAKA----LDFP------VKIFSLDQLDEVVKKAKSLFNTT 174 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTC-CCEEEEESCHHHHHT----CCSS------CEEEEGGGHHHHHHTCSEEEECS
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHH----HHHH------cccCCHHHHHhhhcCCCEEEECC
Confidence 355 99999999999999999998875 589999999876553 2211 111222344 4578999999986
Q ss_pred cc
Q psy12825 254 GV 255 (488)
Q Consensus 254 g~ 255 (488)
..
T Consensus 175 p~ 176 (253)
T 3u62_A 175 SV 176 (253)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.094 Score=49.94 Aligned_cols=113 Identities=18% Similarity=0.288 Sum_probs=70.0
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----c--
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----M-- 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----a-- 242 (488)
.++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++. ...| .+ .
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~ 83 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG-----LSVTGTVCHVGKAEDRERLVA 83 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEccCCCHHHHHHHHH
Confidence 345678899998 9999999999999986 89999999887776666665421 1221 1223 21 1
Q ss_pred -----cCCCcEEEEecccccC--C--Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 -----SEGSRIVIITAGVRSL--V--GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 -----l~dADiVIitag~~~k--~--G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+.|++|..+|.... + ..+ ..+.+..|+. +.+.+.+.+.+. ..+.||+++
T Consensus 84 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~is 150 (260)
T 2zat_A 84 MAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVS 150 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEe
Confidence 2379999999986421 1 111 1233445544 334455555443 345566665
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.014 Score=56.29 Aligned_cols=33 Identities=9% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
..+||+|||+|.||.+++..|...|. +|+.+|.
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~--~V~~~~~ 37 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGH--YVTVLHA 37 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTC--EEEECSS
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCC--EEEEecC
Confidence 45799999999999999999999987 8999987
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.031 Score=58.57 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|+|.|.+|..++..+...|. +|+.+|+++.+..... + .. .. . .++ +.+++||+||.
T Consensus 207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~-~--~G------~~--~-~sL~eal~~ADVVil 272 (436)
T 3h9u_A 207 VMIAGKTACVCGYGDVGKGCAAALRGFGA--RVVVTEVDPINALQAA-M--EG------YQ--V-LLVEDVVEEAHIFVT 272 (436)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH-H--TT------CE--E-CCHHHHTTTCSEEEE
T ss_pred CcccCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCChhhhHHHH-H--hC------Ce--e-cCHHHHHhhCCEEEE
Confidence 45677899999999999999998877776 8999999886543211 1 11 11 1 255 57999999998
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+.+...--+ .+.+....|++++++++++.
T Consensus 273 t~gt~~iI~-----------------~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 273 TTGNDDIIT-----------------SEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp CSSCSCSBC-----------------TTTGGGCCTTEEEEECSSSG
T ss_pred CCCCcCccC-----------------HHHHhhcCCCcEEEEeCCCC
Confidence 653221100 11244456889999999764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.045 Score=53.85 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=69.8
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC--C
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG--S 246 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d--A 246 (488)
|+||.|+|| |.+|+.++..|+..|. +|+++|++. ........++... ....+... +|. +.+++ +
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC----CceEEEEcCCCCHHHHHHHHhccCC
Confidence 468999998 9999999999999886 899998742 1122222333321 11222221 122 24666 9
Q ss_pred cEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 247 RIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 247 DiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|+||.+++..... .....+.+..|+.-...+.+.+.+......+|++|
T Consensus 75 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S 124 (347)
T 1orr_A 75 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 124 (347)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 9999998753210 01234456778888888888888776544566665
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.047 Score=54.17 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=40.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
|+++||+|||+|.+|..++..+....- -+|+ ++|+++++++. .. . .+....++.+..++|+||++.
T Consensus 7 M~~irv~IIG~G~iG~~~~~~l~~~~~-~elvav~d~~~~~~~~------~g----~--~~~~~~~l~~~~~~DvViiat 73 (304)
T 3bio_A 7 DKKIRAAIVGYGNIGRYALQALREAPD-FEIAGIVRRNPAEVPF------EL----Q--PFRVVSDIEQLESVDVALVCS 73 (304)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTT-EEEEEEECC-------------CC----T--TSCEESSGGGSSSCCEEEECS
T ss_pred CCCCEEEEECChHHHHHHHHHHhcCCC-CEEEEEEcCCHHHHHH------cC----C--CcCCHHHHHhCCCCCEEEECC
Confidence 457899999999999998888876432 2666 88999876542 11 0 111224555558999999985
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.084 Score=50.34 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=72.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e--------- 241 (488)
.+.+++.|+|| |.+|..++..|+..|. +|+++|++++.++....++...........+ ...|. +
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv~~~~~v~~~~~~~ 81 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIV-LPLDITDCTKADTEIKDI 81 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceE-EeccCCCHHHHHHHHHHH
Confidence 34567889998 9999999999999987 8999999999888777777654211011112 22232 1
Q ss_pred --ccCCCcEEEEecccccCC--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 --MSEGSRIVIITAGVRSLV--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 --al~dADiVIitag~~~k~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-.
T Consensus 82 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~ 146 (250)
T 3nyw_A 82 HQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASR 146 (250)
T ss_dssp HHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC-
T ss_pred HHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccH
Confidence 124689999999864321 1221 223444443 4455555555433 4567777643
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.078 Score=50.25 Aligned_cols=114 Identities=12% Similarity=0.190 Sum_probs=69.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----cc-
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----MS- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----al- 243 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|+ +++.++....++.... .++. ...|. + .+
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~ 77 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG-----GEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT-----CEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHH
Confidence 34578999998 9999999999999986 8999999 8777766656664321 1221 12232 1 12
Q ss_pred ------CCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 ------EGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ------~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.|+||.+++..... ..+ ..+.+..|+. +.+.+.+.+.+..+.+.+|+++-
T Consensus 78 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS 145 (261)
T 1gee_A 78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS 145 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 2789999999864321 111 1233444443 34445555554442456776654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.13 Score=48.92 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=69.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----c-------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----M------- 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----a------- 242 (488)
++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++.... ....+ ...| .+ .
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~v~~~~~~~~~~ 76 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG---GHAVA-VKVDVSDRDQVFAAVEQARKT 76 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEE-EECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEecCCCHHHHHHHHHHHHHH
Confidence 56889998 9999999999999986 89999999888776666665421 11111 1223 21 1
Q ss_pred cCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+..+.+.||+++-
T Consensus 77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS 139 (256)
T 1geg_A 77 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS 139 (256)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 23799999999864321 1111 223444543 44555666655443466777653
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.12 Score=49.30 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=72.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
.+.+++.|+|+ |.+|.+++..|+..|. +|++.|++.+.++....++.+.. .++. ...| .+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 82 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG-----GKAIGLECNVTDEQHREAVIKA 82 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 45678888898 9999999999999987 89999999988887777776531 1221 1223 21
Q ss_pred ---ccCCCcEEEEecccccCC--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLV--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+.-|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 83 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS 147 (256)
T 3gaf_A 83 ALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISS 147 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 123789999999865321 1222 223444543 445555555443 3466777764
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.12 Score=50.05 Aligned_cols=114 Identities=13% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++. ...|. +
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 92 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG-----VEADGRTCDVRSVPEIEALVAA 92 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHH
Confidence 34567999998 9999999999999986 89999999888776666665421 1121 12232 1
Q ss_pred ---ccCCCcEEEEecccccCCC---cc---hHhhHhhhHHHHHHHHHHHhcc-----CCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKIFKDLIPKIAKG-----SPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G---~~---r~dll~~N~~ii~ei~~~I~~~-----~p~a~vIv~TN 295 (488)
.+.+.|++|..+|...... .+ -...+..|+.-...+.+.+.+. ...+.||+++-
T Consensus 93 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS 160 (277)
T 2rhc_B 93 VVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS 160 (277)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence 1337899999998653211 11 1234455555444444443322 12356777654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.024 Score=56.89 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=56.3
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC---hhHHHHHHHHHhhcCCCCCCCcEEE--cCC----ccccC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN---EDRCKGEMLDLQHGAPFLRSPKIES--GSD----IAMSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~---~e~l~g~~~dL~~~~~~~~~~~v~~--ttd----~eal~ 244 (488)
..+.+++.|+|||.+|.+++..|+..|. .+|.+++++ .++++..+.++.... ...+.. ..+ .+.+.
T Consensus 145 ~l~gk~~lVlGAGGaaraia~~L~~~G~-~~v~v~nRt~~~~~~a~~la~~~~~~~----~~~v~~~~~~~l~~~~~~l~ 219 (312)
T 3t4e_A 145 DMRGKTMVLLGAGGAATAIGAQAAIEGI-KEIKLFNRKDDFFEKAVAFAKRVNENT----DCVVTVTDLADQHAFTEALA 219 (312)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTHHHHHHHHHHHHHHHS----SCEEEEEETTCHHHHHHHHH
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHcCC-CEEEEEECCCchHHHHHHHHHHhhhcc----CcceEEechHhhhhhHhhcc
Confidence 3466799999999999999999998775 489999999 788887777776532 122222 223 23478
Q ss_pred CCcEEEEeccc
Q psy12825 245 GSRIVIITAGV 255 (488)
Q Consensus 245 dADiVIitag~ 255 (488)
++|+||.+...
T Consensus 220 ~~DiIINaTp~ 230 (312)
T 3t4e_A 220 SADILTNGTKV 230 (312)
T ss_dssp HCSEEEECSST
T ss_pred CceEEEECCcC
Confidence 99999998643
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0091 Score=59.88 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--C-Cc----ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--S-DI----AMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--t-d~----eal 243 (488)
..++++||.|+|| |.+|+.++..|+.. +. +|+.+|++.+.+.. +... ...++... + |. +++
T Consensus 20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~----~~~~----~~v~~~~~Dl~~d~~~~~~~~ 89 (372)
T 3slg_A 20 GSMKAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRLGD----LVKH----ERMHFFEGDITINKEWVEYHV 89 (372)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTTGG----GGGS----TTEEEEECCTTTCHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhhhh----hccC----CCeEEEeCccCCCHHHHHHHh
Confidence 4567789999998 99999999999987 66 89999997654332 1110 11122211 1 32 257
Q ss_pred CCCcEEEEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 EGSRIVIITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ~dADiVIitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+++|+||.+++...... ....+.+..|+.-...+.+.+.+.. ..+|++|-
T Consensus 90 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS 141 (372)
T 3slg_A 90 KKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST 141 (372)
T ss_dssp HHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred ccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence 78999999886532111 1233445666666667777777766 34555553
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.1 Score=50.07 Aligned_cols=115 Identities=16% Similarity=0.282 Sum_probs=73.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc----------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI----------AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~----------ea 242 (488)
.+.+++.|+|| |.+|.+++..|+..|. +|++.|++++.++....++..... ...+. ...|. +.
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~D~~~~~~~~~~~~~ 82 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYP---DAILQPVVADLGTEQGCQDVIEK 82 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCT---TCEEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCC---CceEEEEecCCCCHHHHHHHHHh
Confidence 34567888898 9999999999999987 899999999888877777765421 11221 12232 23
Q ss_pred cCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS 144 (267)
T 3t4x_A 83 YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIAS 144 (267)
T ss_dssp CCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECC
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence 458999999998653221 122 223455544 345555555543 3456777653
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.16 Score=49.75 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=72.3
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC------------hhHHHHHHHHHhhcCCCCCCCcEE-EcCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN------------EDRCKGEMLDLQHGAPFLRSPKIE-SGSD 239 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~------------~e~l~g~~~dL~~~~~~~~~~~v~-~ttd 239 (488)
.++.+++.|+|| |.+|..++..|+..|. .|+++|++ .+.++....++.... .++. ...|
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D 97 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-----RRIIASQVD 97 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-----CCEEEEECC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC-----CceEEEECC
Confidence 345678889998 8999999999999987 89999987 666666666665431 1221 2223
Q ss_pred c---c-----------ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 240 I---A-----------MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 240 ~---e-----------al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
. + .+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+....+.||+++
T Consensus 98 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~is 177 (299)
T 3t7c_A 98 VRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTS 177 (299)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 2 1 2347899999998643211 222 233445543 4455556655555567777776
Q ss_pred C
Q psy12825 295 N 295 (488)
Q Consensus 295 N 295 (488)
-
T Consensus 178 S 178 (299)
T 3t7c_A 178 S 178 (299)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.013 Score=61.85 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=49.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE--cCCc-----cccCCCcE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES--GSDI-----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~--ttd~-----eal~dADi 248 (488)
..|||.|+|+|.+|+++|..|...+. +++++|.|+++++.....+ + ..+.. .+++ +.+++||+
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~--~v~vId~d~~~~~~~~~~~-~-------~~~i~Gd~~~~~~L~~Agi~~ad~ 71 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENN--DITIVDKDGDRLRELQDKY-D-------LRVVNGHASHPDVLHEAGAQDADM 71 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTE--EEEEEESCHHHHHHHHHHS-S-------CEEEESCTTCHHHHHHHTTTTCSE
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHhc-C-------cEEEEEcCCCHHHHHhcCCCcCCE
Confidence 46899999999999999999987776 8999999998887543333 1 12222 1232 24899999
Q ss_pred EEEec
Q psy12825 249 VIITA 253 (488)
Q Consensus 249 VIita 253 (488)
+|.+.
T Consensus 72 ~ia~t 76 (461)
T 4g65_A 72 LVAVT 76 (461)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 88754
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.17 Score=48.69 Aligned_cols=115 Identities=19% Similarity=0.236 Sum_probs=73.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-------------ChhHHHHHHHHHhhcCCCCCCCcEE-EcC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-------------NEDRCKGEMLDLQHGAPFLRSPKIE-SGS 238 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-------------~~e~l~g~~~dL~~~~~~~~~~~v~-~tt 238 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|+++|+ +.+.++....++.... .++. ...
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 80 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN-----RRIVAAVV 80 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC-----CeEEEEEC
Confidence 345678899998 9999999999999987 8999998 5666666555555421 1222 122
Q ss_pred C---cc-----------ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 239 D---IA-----------MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 239 d---~e-----------al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
| ++ .+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+..+.+.||+++
T Consensus 81 D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~is 160 (277)
T 3tsc_A 81 DTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILIS 160 (277)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3 21 1346899999998653321 122 223444533 4566666676665567777776
Q ss_pred C
Q psy12825 295 N 295 (488)
Q Consensus 295 N 295 (488)
-
T Consensus 161 S 161 (277)
T 3tsc_A 161 S 161 (277)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0022 Score=64.88 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=31.0
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
..||+|||+|.||+++|++++.+++++|++++|
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D 37 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVID 37 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEe
Confidence 369999999999999999999999999999988
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.15 Score=49.50 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=92.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
.+.+.+.|.|+ +.+|..++..|+..|. .|+++|++++.++..+.++...- .++. ...| .
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g-----~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG-----KEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 45567777788 8899999999999987 89999999999998888887532 1111 1222 1
Q ss_pred --cccCCCcEEEEeccccc--CC--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc------hhHH
Q psy12825 241 --AMSEGSRIVIITAGVRS--LV--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV------DVLT 301 (488)
Q Consensus 241 --eal~dADiVIitag~~~--k~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv------di~t 301 (488)
+.+-.-|++|..+|... .+ ..+. ...+.-|+. ..+...+.|.+.. .+.||+++--. +...
T Consensus 78 ~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~~~~~~~~ 156 (254)
T 4fn4_A 78 TFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIRGGFAGAP 156 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCSSSSCHH
T ss_pred HHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcCCCCCChH
Confidence 23567999999998643 22 1222 223444433 5577777776654 46677775322 2334
Q ss_pred HHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 302 YISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 302 ~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
|.+.|.. + ..+-+.+|..++ |..|++-.+
T Consensus 157 Y~asKaa---------l------~~ltr~lA~ela--~~gIrVN~V 185 (254)
T 4fn4_A 157 YTVAKHG---------L------IGLTRSIAAHYG--DQGIRAVAV 185 (254)
T ss_dssp HHHHHHH---------H------HHHHHHHHHHHG--GGTEEEEEE
T ss_pred HHHHHHH---------H------HHHHHHHHHHhh--hhCeEEEEE
Confidence 4444431 2 235666777773 555665444
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.027 Score=54.53 Aligned_cols=74 Identities=12% Similarity=0.266 Sum_probs=52.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIES 236 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~~ 236 (488)
+..||.|+|+|.+|+.++..|+..|+ .+|.|+|.+. .+++..+..+.+.. +..++..
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~Gv-g~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~~~v~~ 102 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAGV-GTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN---PDIQLTA 102 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTTC-SEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC---TTSEEEE
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcCC-CeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC---CCCEEEE
Confidence 45699999999999999999999987 4899998753 45666666666542 2334443
Q ss_pred cC-Cc------cccCCCcEEEEec
Q psy12825 237 GS-DI------AMSEGSRIVIITA 253 (488)
Q Consensus 237 tt-d~------eal~dADiVIita 253 (488)
.. .+ +.++++|+||.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~DvVi~~~ 126 (251)
T 1zud_1 103 LQQRLTGEALKDAVARADVVLDCT 126 (251)
T ss_dssp ECSCCCHHHHHHHHHHCSEEEECC
T ss_pred EeccCCHHHHHHHHhcCCEEEECC
Confidence 22 11 2367899999884
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.078 Score=50.73 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=71.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
.+.+++.|+|+ |.+|.+++..|+..|. +|++.|++++.++....++.... .. ...| .+
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~------~~-~~~Dv~~~~~v~~~~~~~ 76 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFGPRV------HA-LRSDIADLNEIAVLGAAA 76 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGE------EE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCcc------eE-EEccCCCHHHHHHHHHHH
Confidence 45678999998 9999999999999987 89999999988876665553211 11 1122 21
Q ss_pred --ccCCCcEEEEecccccCCC---cc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G---~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+ -...+.-|+.-...+.+.+..+ .+.+.||+++-
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 77 GQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp HHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 2347899999998754211 12 2234556655444455554443 22466777764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.12 Score=51.17 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----c---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----M--- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----a--- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|++.+.++....++.... ...++. ...|. + .
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~ 80 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEG---SGPEVMGVQLDVASREGFKMAADE 80 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CGGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCCeEEEEECCCCCHHHHHHHHHH
Confidence 45678999999 9999999999999987 89999999998887777765431 111222 12232 1 1
Q ss_pred ----cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhcc-----CCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKG-----SPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~-----~p~a~vIv~TN 295 (488)
+...|+||.++|...... .+ -.+++.-|+. +.+.+.+.+.+. ...+.||+++-
T Consensus 81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS 152 (319)
T 3ioy_A 81 VEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS 152 (319)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred HHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence 246799999998643211 11 2233444433 445555555443 23566777663
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.064 Score=54.61 Aligned_cols=127 Identities=15% Similarity=0.195 Sum_probs=75.4
Q ss_pred HHHHH-HHH-HhhhhHHHHHHHHHHH-HhhhCC--------------CCCCCCceEEEEecccchHHHHHHHHHcCCCCe
Q psy12825 142 GMACT-YSI-LTQTMARDAVSTVDRL-LSQVAP--------------SIESPDQKITVVGAGQVGMACTYSILTQGIYSN 204 (488)
Q Consensus 142 g~~~a-~~~-~~k~la~eivlid~~~-~~e~~~--------------~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~e 204 (488)
+-+.| |++ ++-.+++.+...+... .++... ......++|+|||.|.||..+|..+..-|. +
T Consensus 108 ~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~--~ 185 (352)
T 3gg9_A 108 PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGM--N 185 (352)
T ss_dssp SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTC--E
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCC--E
Confidence 44444 333 2246777777777543 222211 024467899999999999999998877676 8
Q ss_pred EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhc
Q psy12825 205 FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK 283 (488)
Q Consensus 205 l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~ 283 (488)
|..||++.... ..... .+....++ +.+++||+|+++..... .++ .++ | .+.+..
T Consensus 186 V~~~d~~~~~~-----~~~~~-------g~~~~~~l~ell~~aDiV~l~~Plt~---~t~-~li--~-------~~~l~~ 240 (352)
T 3gg9_A 186 VLVWGRENSKE-----RARAD-------GFAVAESKDALFEQSDVLSVHLRLND---ETR-SII--T-------VADLTR 240 (352)
T ss_dssp EEEECSHHHHH-----HHHHT-------TCEECSSHHHHHHHCSEEEECCCCST---TTT-TCB--C-------HHHHTT
T ss_pred EEEECCCCCHH-----HHHhc-------CceEeCCHHHHHhhCCEEEEeccCcH---HHH-Hhh--C-------HHHHhh
Confidence 99999875321 11111 11233455 46889999999863111 011 111 1 123445
Q ss_pred cCCCcEEEEEeC
Q psy12825 284 GSPDCILLIISN 295 (488)
Q Consensus 284 ~~p~a~vIv~TN 295 (488)
..|.+++|+++.
T Consensus 241 mk~gailIN~aR 252 (352)
T 3gg9_A 241 MKPTALFVNTSR 252 (352)
T ss_dssp SCTTCEEEECSC
T ss_pred CCCCcEEEECCC
Confidence 568899999973
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.11 Score=49.77 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=38.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|+ +++.++....++..
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~ 58 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNA 58 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHH
Confidence 45567888898 9999999999999986 8999999 88877766666654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.051 Score=53.29 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
..++|.|+|+|.++..+++.|...|. .+|.+++++.++++..+.++.. .+ ..+++ +.++|+||.+...
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~-~~i~v~nRt~~ka~~la~~~~~--------~~--~~~~~-~~~~DivInaTp~ 185 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALYGY--------AY--INSLE-NQQADILVNVTSI 185 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHHTC--------EE--ESCCT-TCCCSEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC--------cc--chhhh-cccCCEEEECCCC
Confidence 34689999999999999999988875 4899999999888776655521 11 11223 5789999998654
Q ss_pred c
Q psy12825 256 R 256 (488)
Q Consensus 256 ~ 256 (488)
+
T Consensus 186 g 186 (271)
T 1npy_A 186 G 186 (271)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.09 Score=49.52 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=71.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.+.. ....+ ...| .+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~~~~~~~~~ 76 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG---FKARG-LVLNISDIESIQNFFAEI 76 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT---CCEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEE-EEecCCCHHHHHHHHHHH
Confidence 34568889998 9999999999999987 89999999988887766665431 11111 1122 21
Q ss_pred --ccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|++|.++|...... .+ -...+..|+. +.+.+.+.+.+. +.+.+|+++-.
T Consensus 77 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~ 142 (247)
T 3lyl_A 77 KAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSV 142 (247)
T ss_dssp HHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcch
Confidence 1235799999998753211 11 2233444543 344444444443 34567777643
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0023 Score=63.99 Aligned_cols=33 Identities=42% Similarity=0.619 Sum_probs=31.2
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
..||+|||+|+||+++||+++.+++.+|++++|
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~D 46 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLD 46 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 369999999999999999999999999999988
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.011 Score=56.69 Aligned_cols=71 Identities=10% Similarity=0.244 Sum_probs=48.1
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--cccCCCcEEEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--AMSEGSRIVII 251 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--eal~dADiVIi 251 (488)
..+.++|.|||+|.+|..-+..|+..|- +|++++.+.. . ...++.... ...+. ..++ +++.++|+||.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA--~VtVvap~~~--~-~l~~l~~~~----~i~~i-~~~~~~~dL~~adLVIa 97 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGA--AITVVAPTVS--A-EINEWEAKG----QLRVK-RKKVGEEDLLNVFFIVV 97 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCC--CEEEECSSCC--H-HHHHHHHTT----SCEEE-CSCCCGGGSSSCSEEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCCC--H-HHHHHHHcC----CcEEE-ECCCCHhHhCCCCEEEE
Confidence 3567899999999999999988888876 8999987542 1 122333211 11222 2333 67999999998
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+.+
T Consensus 98 AT~ 100 (223)
T 3dfz_A 98 ATN 100 (223)
T ss_dssp CCC
T ss_pred CCC
Confidence 853
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.06 Score=47.32 Aligned_cols=85 Identities=12% Similarity=0.216 Sum_probs=51.9
Q ss_pred CCCCCceEEEEec----ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCc
Q psy12825 173 IESPDQKITVVGA----GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGA----G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dAD 247 (488)
...++.+|+|||+ |.+|..++..|...|+ + ++++|+.. + .+. .+....+++++ .++|
T Consensus 10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~--V~~vnp~~-~----~i~---------G~~~~~s~~el~~~vD 71 (138)
T 1y81_A 10 NSKEFRKIALVGASKNPAKYGNIILKDLLSKGF--E--VLPVNPNY-D----EIE---------GLKCYRSVRELPKDVD 71 (138)
T ss_dssp ----CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTC-S----EET---------TEECBSSGGGSCTTCC
T ss_pred cccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC--E--EEEeCCCC-C----eEC---------CeeecCCHHHhCCCCC
Confidence 3457889999999 9999999999988887 5 55555542 0 010 12233455544 4799
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEE
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILL 291 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vI 291 (488)
++|++.. .+...++.+++.+....++++
T Consensus 72 lvii~vp----------------~~~v~~v~~~~~~~g~~~i~~ 99 (138)
T 1y81_A 72 VIVFVVP----------------PKVGLQVAKEAVEAGFKKLWF 99 (138)
T ss_dssp EEEECSC----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeC----------------HHHHHHHHHHHHHcCCCEEEE
Confidence 9999952 234555555555555555333
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.035 Score=55.75 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC---hhHHHHHHHHHhhcCCCCCCCcEEE--cCCc----cccC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN---EDRCKGEMLDLQHGAPFLRSPKIES--GSDI----AMSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~---~e~l~g~~~dL~~~~~~~~~~~v~~--ttd~----eal~ 244 (488)
..+.+++.|+|+|.+|.+++..|+..|. .+|.+++++ .++++..+.++.... ...+.. ..+. +.+.
T Consensus 151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga-~~V~i~nR~~~~~~~a~~la~~~~~~~----~~~~~~~~~~~~~~l~~~l~ 225 (315)
T 3tnl_A 151 DIIGKKMTICGAGGAATAICIQAALDGV-KEISIFNRKDDFYANAEKTVEKINSKT----DCKAQLFDIEDHEQLRKEIA 225 (315)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHS----SCEEEEEETTCHHHHHHHHH
T ss_pred CccCCEEEEECCChHHHHHHHHHHHCCC-CEEEEEECCCchHHHHHHHHHHhhhhc----CCceEEeccchHHHHHhhhc
Confidence 3567899999999999999999998774 489999999 888887777776542 122222 2232 3467
Q ss_pred CCcEEEEeccc
Q psy12825 245 GSRIVIITAGV 255 (488)
Q Consensus 245 dADiVIitag~ 255 (488)
++|+||.+...
T Consensus 226 ~aDiIINaTp~ 236 (315)
T 3tnl_A 226 ESVIFTNATGV 236 (315)
T ss_dssp TCSEEEECSST
T ss_pred CCCEEEECccC
Confidence 99999998643
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.12 Score=49.88 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=54.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCcc-----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDIA----------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~e----------- 241 (488)
.+.++|.|+|| |.+|..++..|+..|. .|++.+++.++++....++.... ..++. ...|..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN----HENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT----CCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEccCCCcHHHHHHHHH
Confidence 34567888898 9999999999999987 89999999998887777776532 11222 122321
Q ss_pred ----ccCCCcEEEEecccc
Q psy12825 242 ----MSEGSRIVIITAGVR 256 (488)
Q Consensus 242 ----al~dADiVIitag~~ 256 (488)
.+...|++|..+|..
T Consensus 84 ~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 84 FIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHSSCCEEEECCCCC
T ss_pred HHHHhCCCCCEEEECCccc
Confidence 124789999999864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.12 Score=50.22 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=92.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I---------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~---------- 240 (488)
+.+.+.|.|+ +.+|..++..|+..|. .|++.|++++.++..+.++.+.. .++. ...| .
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG-----YDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT-----CCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEeeCCCHHHHHHHHHHH
Confidence 4556666687 8899999999999997 89999999999888777776532 1111 1112 1
Q ss_pred -cccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCch------hHHHH
Q psy12825 241 -AMSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPVD------VLTYI 303 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~ 303 (488)
+.+-.-|++|..+|...... .+. ...+.-|+. ..+...+.|.+....+.||+++--.. ...|.
T Consensus 81 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~ 160 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYT 160 (255)
T ss_dssp HHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHH
T ss_pred HHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHH
Confidence 24667899999998754321 122 223444543 45777777766555677888863322 33444
Q ss_pred HHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 304 SWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 304 ~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
+.|. |+ ..+-+.+|..++ |..|++-.+
T Consensus 161 asKa---------al------~~ltr~lA~ela--~~gIrVN~V 187 (255)
T 4g81_D 161 AAKG---------GI------KMLTCSMAAEWA--QFNIQTNAI 187 (255)
T ss_dssp HHHH---------HH------HHHHHHHHHHHG--GGTEEEEEE
T ss_pred HHHH---------HH------HHHHHHHHHHhc--ccCeEEEEE
Confidence 4442 11 235666777774 455665433
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.052 Score=52.24 Aligned_cols=78 Identities=13% Similarity=0.233 Sum_probs=52.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----ccC-
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----MSE- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----al~- 244 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|+++++++....++..... ...++. ...|. + .++
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~ 79 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGV--SEQNVNSVVADVTTDAGQDEILST 79 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccc--CCCceeEEecccCCHHHHHHHHHH
Confidence 45567888898 9999999999999986 899999998888766666622110 011222 12232 1 233
Q ss_pred ------CCcEEEEecccc
Q psy12825 245 ------GSRIVIITAGVR 256 (488)
Q Consensus 245 ------dADiVIitag~~ 256 (488)
+.|++|..+|..
T Consensus 80 ~~~~~g~id~lv~~Ag~~ 97 (278)
T 1spx_A 80 TLGKFGKLDILVNNAGAA 97 (278)
T ss_dssp HHHHHSCCCEEEECCC--
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 799999999864
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.03 Score=54.99 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=67.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCC---c----cccCC-
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSD---I----AMSEG- 245 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd---~----eal~d- 245 (488)
+.++|.|+|| |.+|.+++..|+..|. +|+++|++++.... ..+.+.. ...++.. ..| . +.+++
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~--~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~ 74 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFAS--WRLKELG---IENDVKIIHMDLLEFSNIIRTIEKV 74 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTT--HHHHHTT---CTTTEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCccccc--ccHhhcc---ccCceeEEECCCCCHHHHHHHHHhc
Confidence 4579999999 9999999999999886 89999997654321 1122211 0112221 223 2 23444
Q ss_pred -CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 -SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 -ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.|+||.+++..... .....+.+..|+.-...+.+.+.+......+|++|
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S 126 (345)
T 2z1m_A 75 QPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS 126 (345)
T ss_dssp CCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence 59999998754211 12234456667776677777766654324455554
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.031 Score=57.40 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=69.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh---HHHHHHHHHhhcCC------CCCCCcEEEcCCc--
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED---RCKGEMLDLQHGAP------FLRSPKIESGSDI-- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e---~l~g~~~dL~~~~~------~~~~~~v~~ttd~-- 240 (488)
...++++|.|+|| |.+|..++..|+..+. +|++++++++ .++.....+..... ......+. ..|+
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v-~~Dl~d 141 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVI-VGDFEC 141 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEE-EECC--
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEE-eCCCCC
Confidence 4456779999999 9999999999966665 8999998766 33333333322100 00111111 2232
Q ss_pred ----cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 ----AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 ----eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+++.++|+||.+++..... ....+.+..|+.-...+++...+ . ...+|++|
T Consensus 142 ~~~l~~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~S 196 (427)
T 4f6c_A 142 MDDVVLPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS 196 (427)
T ss_dssp -CCCCCSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred cccCCCcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEC
Confidence 2567999999998754321 23445567788888888888777 2 33455554
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.049 Score=56.94 Aligned_cols=94 Identities=15% Similarity=0.251 Sum_probs=62.1
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|+|+|.+|..++..+...|. +|+.+|+++.+..... ... .. ..++ +.+++||+||.
T Consensus 216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~---~~G------~~---v~~Leeal~~ADIVi~ 281 (435)
T 3gvp_A 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGS--IVYVTEIDPICALQAC---MDG------FR---LVKLNEVIRQVDIVIT 281 (435)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH---HTT------CE---ECCHHHHTTTCSEEEE
T ss_pred ceecCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHH---HcC------CE---eccHHHHHhcCCEEEE
Confidence 45577899999999999999998876666 8999999986543211 111 11 1244 57999999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+.+.+ + ++. .+.+....|.+++++++.+.
T Consensus 282 atgt~---~------------lI~--~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 282 CTGNK---N------------VVT--REHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp CSSCS---C------------SBC--HHHHHHSCTTEEEEECSSTT
T ss_pred CCCCc---c------------cCC--HHHHHhcCCCcEEEEecCCC
Confidence 74321 1 111 11223345789999998763
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.1 Score=48.76 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=53.8
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----cc----
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MS---- 243 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al---- 243 (488)
+++|.|+|+ |.+|..++..|+..|. +|++.|++.++++....++..... .++. ...| .+ .+
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~ 75 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQG----VEVFYHHLDVSKAESVEEFSKKVL 75 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTCHHHHHHHCC-HH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC----CeEEEEEeccCCHHHHHHHHHHHH
Confidence 457889998 8999999999999987 899999999988877777753211 1221 1122 21 22
Q ss_pred ---CCCcEEEEeccccc
Q psy12825 244 ---EGSRIVIITAGVRS 257 (488)
Q Consensus 244 ---~dADiVIitag~~~ 257 (488)
...|++|..+|...
T Consensus 76 ~~~g~id~li~~Ag~~~ 92 (235)
T 3l77_A 76 ERFGDVDVVVANAGLGY 92 (235)
T ss_dssp HHHSSCSEEEECCCCCC
T ss_pred HhcCCCCEEEECCcccc
Confidence 37899999998653
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.02 Score=57.60 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiVI 250 (488)
.+++||+|||+|.+|...+..+.......+| .++|+++++++..+.... +...+|+++ ++ ++|+|+
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~----------~~~~~~~~~ll~~~~~D~V~ 80 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTG----------ARGHASLTDMLAQTDADIVI 80 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHC----------CEEESCHHHHHHHCCCSEEE
T ss_pred CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcC----------CceeCCHHHHhcCCCCCEEE
Confidence 3568999999999999988888776211254 489999988775544331 234567754 43 899999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 81 i~t 83 (354)
T 3q2i_A 81 LTT 83 (354)
T ss_dssp ECS
T ss_pred ECC
Confidence 985
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.086 Score=50.00 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----ccC--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MSE-- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al~-- 244 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++.. ...+ ...| .+ .++
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~-~~~D~~~~~~v~~~~~~~ 80 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGN------NCVF-APADVTSEKDVQTALALA 80 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCT------TEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhCC------ceEE-EEcCCCCHHHHHHHHHHH
Confidence 45678999999 9999999999999987 899999988777655555421 1111 1122 21 222
Q ss_pred -----CCcEEEEecccc
Q psy12825 245 -----GSRIVIITAGVR 256 (488)
Q Consensus 245 -----dADiVIitag~~ 256 (488)
..|+||.+++..
T Consensus 81 ~~~~g~id~li~~Ag~~ 97 (265)
T 2o23_A 81 KGKFGRVDVAVNCAGIA 97 (265)
T ss_dssp HHHHSCCCEEEECCCCC
T ss_pred HHHCCCCCEEEECCccC
Confidence 799999999864
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.042 Score=54.27 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=64.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
...+.++|+|||+|.+|..++..+...|. +|..+|++.++++.. .++ ..++....++ +.+++||+||.
T Consensus 153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~--~V~~~d~~~~~~~~~-~~~--------g~~~~~~~~l~~~l~~aDvVi~ 221 (300)
T 2rir_A 153 YTIHGSQVAVLGLGRTGMTIARTFAALGA--NVKVGARSSAHLARI-TEM--------GLVPFHTDELKEHVKDIDICIN 221 (300)
T ss_dssp SCSTTSEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHH-HHT--------TCEEEEGGGHHHHSTTCSEEEE
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHH-HHC--------CCeEEchhhHHHHhhCCCEEEE
Confidence 45678899999999999999998887776 899999988765432 111 1122222344 46899999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe-CCch
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS-NPVD 298 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T-NPvd 298 (488)
+... ++ + |. ..+....|.+++|+++ +|.+
T Consensus 222 ~~p~----~~-----i--~~-------~~~~~mk~g~~lin~a~g~~~ 251 (300)
T 2rir_A 222 TIPS----MI-----L--NQ-------TVLSSMTPKTLILDLASRPGG 251 (300)
T ss_dssp CCSS----CC-----B--CH-------HHHTTSCTTCEEEECSSTTCS
T ss_pred CCCh----hh-----h--CH-------HHHHhCCCCCEEEEEeCCCCC
Confidence 9642 11 1 11 1234445788888886 4644
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.16 Score=47.46 Aligned_cols=111 Identities=9% Similarity=0.024 Sum_probs=67.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-------MS 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-------al 243 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++. ..++. ..| .+ .+
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~-~~D~~~~~~~~~~~~~~ 74 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECP-------GIEPV-CVDLGDWDATEKALGGI 74 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST-------TCEEE-ECCTTCHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcc-------CCCcE-EecCCCHHHHHHHHHHc
Confidence 56678999999 9999999999999986 89999999876654433321 11222 222 21 23
Q ss_pred CCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 EGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
...|+||.+++..... ..+ ....+..|+.- .+.+.+.+.+....+.+|+++-
T Consensus 75 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS 136 (244)
T 1cyd_A 75 GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 136 (244)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 3579999998864321 111 22334455543 3444444444332456666654
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.17 Score=49.05 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c----c---
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A----M--- 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e----a--- 242 (488)
.++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .....+ ...|. + .
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~-~~~Dl~~~~~~~~~~~~ 97 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT--GNKVHA-IQCDVRDPDMVQNTVSE 97 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH--SSCEEE-EECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc--CCceEE-EEeCCCCHHHHHHHHHH
Confidence 345678999998 9999999999999986 89999999888776666665421 011111 12232 1 1
Q ss_pred ----cCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|+||.++|..... ..+ ....+..|+.- .+.+.+.+.+....+.+|+++-
T Consensus 98 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS 164 (302)
T 1w6u_A 98 LIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT 164 (302)
T ss_dssp HHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 22459999999864321 111 22334455443 3444444443334466676654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.12 Score=50.02 Aligned_cols=112 Identities=17% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA--------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e--------- 241 (488)
+.+++.|+|| |.+|..++..|+..|. +|++.|++++.++....++.... .++. ...| .+
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~ 75 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG-----GTALAQVLDVTDRHSVAAFAQAA 75 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHHH
Confidence 3467888898 8999999999999987 89999999998888777776531 1221 1123 21
Q ss_pred --ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 76 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS 140 (264)
T 3tfo_A 76 VDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGS 140 (264)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence 1347899999998653211 121 223444443 3455555555443 456777653
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.14 Score=48.80 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=67.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----ccC--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MSE-- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al~-- 244 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++.. .... ...| .+ .++
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~-~~~D~~d~~~v~~~~~~~ 80 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN------GGFA-VEVDVTKRASVDAAMQKA 80 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT------CCEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc------CCeE-EEEeCCCHHHHHHHHHHH
Confidence 45678999998 9999999999999987 899999998776654433321 1111 1122 21 222
Q ss_pred -----CCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 -----GSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 -----dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.|+||..+|...... .+ ....+..|+. +.+...+.+.+....+.+|+++
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~is 145 (263)
T 3ak4_A 81 IDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTA 145 (263)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 7999999998643211 11 1223444543 3344445554433245566665
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.019 Score=57.51 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=47.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccC--CCcEEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSE--GSRIVII 251 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~--dADiVIi 251 (488)
+++||+|||+|.+|...+..|...+-. +|+ ++|+++++++..+..+. +...+|++ .++ ++|+|++
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g----------~~~~~~~~~~l~~~~~D~V~i 71 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDL-ELVVIADPFIEGAQRLAEANG----------AEAVASPDEVFARDDIDGIVI 71 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHTTT----------CEEESSHHHHTTCSCCCEEEE
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcC----------CceeCCHHHHhcCCCCCEEEE
Confidence 457999999999999988888765322 554 89999987765433221 23446774 455 8999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 72 ~t 73 (344)
T 3euw_A 72 GS 73 (344)
T ss_dssp CS
T ss_pred eC
Confidence 86
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.13 Score=49.04 Aligned_cols=114 Identities=15% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----c---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----M--- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----a--- 242 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.... . .++. ...|. + .
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~--~~~~~~~~D~~~~~~~~~~~~~ 78 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF--G--VRVLEVAVDVATPEGVDAVVES 78 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH--C--CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc--C--CceEEEEcCCCCHHHHHHHHHH
Confidence 35578999998 9999999999999986 89999999887776666664320 0 1111 12232 1 1
Q ss_pred ----cCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ----SEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|.++|..... ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 79 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 144 (263)
T 3ai3_A 79 VRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS 144 (263)
T ss_dssp HHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence 23799999999865321 1122 223444443 3455555554433 355666653
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.098 Score=50.88 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=56.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----cc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----MS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----al 243 (488)
..++.++|.|+|| |.+|..++..|+..|. +|+++|++.+.++....++..........++. ...|. + .+
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 91 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 91 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHH
Confidence 3456678999999 9999999999999986 89999999888877777775421100112222 22232 1 12
Q ss_pred -------CCCcEEEEecccc
Q psy12825 244 -------EGSRIVIITAGVR 256 (488)
Q Consensus 244 -------~dADiVIitag~~ 256 (488)
...|+||.++|..
T Consensus 92 ~~~~~~~g~id~li~~Ag~~ 111 (303)
T 1yxm_A 92 KSTLDTFGKINFLVNNGGGQ 111 (303)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 2589999999854
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.077 Score=50.28 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=38.5
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
.++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 51 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLL 51 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHH
Confidence 355678999998 9999999999999986 8999999987776544444
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.2 Score=48.76 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=38.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~ 223 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.| ++++.++....++.
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~~~~~~~~~~l~ 55 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLN 55 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHh
Confidence 34567888898 9999999999999987 899999 99888877666665
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.16 Score=48.54 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=67.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----cc--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----MS-- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----al-- 243 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++.+.++....++... .++. ...|. + .+
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~ 85 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP------DVISFVHCDVTKDEDVRNLVDT 85 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT------TTEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC------CceEEEECCCCCHHHHHHHHHH
Confidence 45678999999 9999999999999986 8999999887666554444211 1221 12232 1 12
Q ss_pred -----CCCcEEEEecccccCC-----Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 -----EGSRIVIITAGVRSLV-----GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 -----~dADiVIitag~~~k~-----G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.|+||..++..... ..+ ..+.+..|+.- .+.+.+.+.+. ..+.+|+++-
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS 153 (278)
T 2bgk_A 86 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTAS 153 (278)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEEECC
T ss_pred HHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCeEEEEee
Confidence 3789999998864311 111 22344555443 34444444332 3456666653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.17 Score=49.07 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=53.6
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------- 241 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.... .++. ...|. +
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~ 93 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG-----HDVDGSSCDVTSTDEVHAAVA 93 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHH
Confidence 345567889998 9999999999999987 89999999988887777776431 1221 12232 1
Q ss_pred ----ccCCCcEEEEeccccc
Q psy12825 242 ----MSEGSRIVIITAGVRS 257 (488)
Q Consensus 242 ----al~dADiVIitag~~~ 257 (488)
.+...|++|..+|...
T Consensus 94 ~~~~~~g~id~lv~nAg~~~ 113 (279)
T 3sju_A 94 AAVERFGPIGILVNSAGRNG 113 (279)
T ss_dssp HHHHHHCSCCEEEECCCCCC
T ss_pred HHHHHcCCCcEEEECCCCCC
Confidence 1236799999998653
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=53.63 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=66.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccccCC--CcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAMSEG--SRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~eal~d--ADiV 249 (488)
.+||.|+|| |.+|..++..|+..+...+|++++++++. .+ .++. ...| ++.+.. +|+|
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~--------~~-------~~~~~~~~D~~~~~~~~~~~~d~v 69 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA--------EH-------PRLDNPVGPLAELLPQLDGSIDTA 69 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC--------CC-------TTEECCBSCHHHHGGGCCSCCSEE
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc--------cC-------CCceEEeccccCHHHHHHhhhcEE
Confidence 468999998 99999999999998865589999987653 00 0111 1123 222222 8999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++..........+++..|+.....+++.+.+.... .+|++|
T Consensus 70 i~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 113 (215)
T 2a35_A 70 FCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVS 113 (215)
T ss_dssp EECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred EECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEEC
Confidence 99987543222234555667877778888887776433 355554
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.14 Score=48.80 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=68.1
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH--HHHHHHHHhhcCCCCCCCcEE-EcCCc---cc--------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR--CKGEMLDLQHGAPFLRSPKIE-SGSDI---AM-------- 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~--l~g~~~dL~~~~~~~~~~~v~-~ttd~---ea-------- 242 (488)
+++.|+|+ |.+|..++..|+..|. +|++.|++.+. ++....++.... .++. ...|. ++
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~ 75 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD-----QKAVFVGLDVTDKANFDSAIDEA 75 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence 57888998 9999999999999986 89999998876 665555554321 1221 12232 11
Q ss_pred ---cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ---SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ---l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+...|++|..+|...... .+ -...+..|+. +.+.+.+.+.+....+.||+++-
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS 141 (258)
T 3a28_C 76 AEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS 141 (258)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence 237899999998643211 12 1233444543 44555555554443255777653
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.14 Score=49.86 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=72.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.+++.|+|| |.+|.+++..|+..|. +|++.|++++.++....++..... ..-.....| .+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~ 105 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG---NIVRAVVCDVGDPDQVAALFAAV 105 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS---SCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---CeEEEEEcCCCCHHHHHHHHHHH
Confidence 45667888898 9999999999999987 899999999888877777754311 110111223 21
Q ss_pred --ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccC-CCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGS-PDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~-p~a~vIv~TN 295 (488)
.+...|++|.++|.....+ .+. ...+.-|+. +.+.+.+.+.+.. +.+.||+++-
T Consensus 106 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS 173 (281)
T 4dry_A 106 RAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS 173 (281)
T ss_dssp HHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 1236799999998643211 121 223444443 4566666666654 3567777764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.16 Score=48.71 Aligned_cols=114 Identities=15% Similarity=0.172 Sum_probs=71.0
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc--------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-------- 241 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|++.|++.+.++....++.... ..... ...| .+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dv~~~~~v~~~~~~ 81 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG---RRALS-VGTDITDDAQVAHLVDE 81 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEE-EECCTTCHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEE-EEcCCCCHHHHHHHHHH
Confidence 345678999998 8999999999999987 89999999998887777776531 11111 1223 21
Q ss_pred ---ccCCCcEEEEecccccC--C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSL--V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k--~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..++.... + ..+. .+.+.-|+. +.+.+.+.+.+.. +.||+++-
T Consensus 82 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS 147 (264)
T 3ucx_A 82 TMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS 147 (264)
T ss_dssp HHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred HHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence 13478999999876322 1 1121 223444443 3444445554432 56777653
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.02 Score=59.26 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=53.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCC-CeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC--Cc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG--SR 247 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~-~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d--AD 247 (488)
++||+|+|||.+|..++..|+..+-. .+|+++|++.++++..+.++.... ......... +|. +.+++ +|
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~--~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG--YGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT--CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc--CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 36999999999999999999887633 589999999999988777776421 001111111 122 23555 89
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
+||.+++
T Consensus 79 vVin~ag 85 (405)
T 4ina_A 79 IVLNIAL 85 (405)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999975
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.049 Score=52.86 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=61.1
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCCcEEEEeccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dADiVIitag~ 255 (488)
|||.|+|| |.+|++++..|..+|. +|+.+.++++. ..+... .+.++++++|.||-.++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~-----------------~~~~~~~~~~~~l~~~d~vihla~~ 61 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGP-----------------GRITWDELAASGLPSCDAAVNLAGE 61 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCT-----------------TEEEHHHHHHHCCCSCSEEEECCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCc-----------------CeeecchhhHhhccCCCEEEEeccC
Confidence 79999999 9999999999999997 89888875431 122111 123578899999998864
Q ss_pred ccC-----CCc-chHhhHhhhHHHHHHHHHHHhccC
Q psy12825 256 RSL-----VGE-TRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 256 ~~k-----~G~-~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
+-. ... ...++...|+...+.+.+.+....
T Consensus 62 ~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~ 97 (298)
T 4b4o_A 62 NILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAP 97 (298)
T ss_dssp CSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhC
Confidence 321 111 133455667777777777777664
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.1 Score=49.30 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc-------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM------- 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea------- 242 (488)
+.++|.|+|| |.+|..++..|+..|. +|++.++ +++.++....++.... .++. ...| .++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG-----SDAIAVRADVANAEDVTNMVKQ 75 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 4567889998 9999999999999986 8999999 8877776666665421 1221 1223 211
Q ss_pred ----cCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 ----SEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.|++|..+|..... ..+ ....+..|+.- .+.+.+.+.+.. .+.||+++-.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~ 142 (246)
T 2uvd_A 76 TVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASV 142 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence 23799999999865321 111 12334455443 455555565443 3567776643
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.17 Score=48.12 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=68.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----cc--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----MS-- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----al-- 243 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++. ...|. + .+
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 84 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG-----FQVTGSVCDASLRPEREKLMQT 84 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeeEEEECCCCCHHHHHHHHHH
Confidence 45678999998 9999999999999986 89999999887776666665421 1221 12232 1 11
Q ss_pred ------CCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 244 ------EGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 244 ------~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+.|+||.+++..... ..+ ....+..|+.- .+.+.+.+.+.. ...+|+++-.
T Consensus 85 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~ 152 (266)
T 1xq1_A 85 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSI 152 (266)
T ss_dssp HHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC--
T ss_pred HHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence 5789999999864321 112 22334555543 333444444443 3456666543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.11 Score=48.96 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-------cc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-------AM 242 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-------ea 242 (488)
...+.++|.|+|| |.+|.+++..|+..|. +|++.|++++.++....++... ..+... +|. +.
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~D~~~~~~~~~~~~~ 81 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKDN------YTIEVCNLANKEECSNLISK 81 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCSS------EEEEECCTTSHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhccC------ccEEEcCCCCHHHHHHHHHh
Confidence 4556788999998 9999999999999986 8999999998887666555421 111111 121 23
Q ss_pred cCCCcEEEEecccccCC------CcchHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 SEGSRIVIITAGVRSLV------GETRLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 l~dADiVIitag~~~k~------G~~r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.|++|..+|..... ...-...+..|+. +.+.+.+.+.+. ..+.+|+++-.
T Consensus 82 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~ 144 (249)
T 3f9i_A 82 TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSI 144 (249)
T ss_dssp CSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccH
Confidence 44789999999864321 1122334444543 344445544443 34567777644
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.25 Score=47.89 Aligned_cols=115 Identities=10% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---ccc------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IAM------ 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~ea------ 242 (488)
.+.+++.|+|| |.+|.+++..|+..|. +|+++|. +++.++....++.... .++. ...| .++
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~ 99 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG-----ARVIFLRADLADLSSHQATVD 99 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT-----CCEEEEECCTTSGGGHHHHHH
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHH
Confidence 44567888998 9999999999999987 8999996 7777776666665431 1221 1223 211
Q ss_pred -----cCCCcEEEEeccccc---CC--Ccc---hHhhHhhhHH----HHHHHHHHHhccC--CCcEEEEEeCC
Q psy12825 243 -----SEGSRIVIITAGVRS---LV--GET---RLQLVDRNVK----IFKDLIPKIAKGS--PDCILLIISNP 296 (488)
Q Consensus 243 -----l~dADiVIitag~~~---k~--G~~---r~dll~~N~~----ii~ei~~~I~~~~--p~a~vIv~TNP 296 (488)
+...|++|..+|... .+ ..+ -...+.-|+. +.+.+.+.+.+.. +.+.||+++-.
T Consensus 100 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~ 172 (280)
T 4da9_A 100 AVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSV 172 (280)
T ss_dssp HHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_pred HHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcch
Confidence 237899999998731 11 112 1233445544 4456666665543 24567777643
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.17 Score=50.03 Aligned_cols=115 Identities=14% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC------------hhHHHHHHHHHhhcCCCCCCCcEE-EcCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN------------EDRCKGEMLDLQHGAPFLRSPKIE-SGSD 239 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~------------~e~l~g~~~dL~~~~~~~~~~~v~-~ttd 239 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|+++|++ .+.++.....+.... .++. ...|
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D 115 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG-----RRIIARQAD 115 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT-----CCEEEEECC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhcC-----CeEEEEECC
Confidence 345567888898 9999999999999987 89999986 555655555554321 1222 2223
Q ss_pred c---c-----------ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 240 I---A-----------MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 240 ~---e-----------al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
. + .+...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+....+.||+++-
T Consensus 116 v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS 195 (317)
T 3oec_A 116 VRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSS 195 (317)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECc
Confidence 2 1 123789999999865321 1222 233445543 45566666665555677777764
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.13 Score=48.28 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=64.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---cc----c--
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---AM----S-- 243 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---ea----l-- 243 (488)
+.++|.|+|+ |.+|..++..|+..|. +|+++ +.+++.++....++.... .++. ...|. ++ +
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 76 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG-----INVVVAKGDVKNPEDVENMVKT 76 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT-----CCEEEEESCTTSHHHHHHHHHH
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 4578999998 9999999999999986 88888 566666665555554321 1221 12232 21 2
Q ss_pred -----CCCcEEEEecccccCC------CcchHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 244 -----EGSRIVIITAGVRSLV------GETRLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 244 -----~dADiVIitag~~~k~------G~~r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+.|+||.+++..... .....+.+..|+.- .+.+.+.+.+. ..+.+|+++-.
T Consensus 77 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~ 143 (247)
T 2hq1_A 77 AMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ-KSGKIINITSI 143 (247)
T ss_dssp HHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECC-
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence 3789999999864321 11123345556554 34444444433 23556776644
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.27 Score=46.64 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc----CCc--------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG----SDI-------- 240 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t----td~-------- 240 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|+++|++++.++....++..... ....+... +|.
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 84 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG--RQPQWFILDLLTCTSENCQQLAQ 84 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS--CCCEEEECCTTTCCHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC--CCceEEEEecccCCHHHHHHHHH
Confidence 356678999998 9999999999999987 899999999888877777654311 01111111 121
Q ss_pred ---cccCCCcEEEEecccccC--C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 ---AMSEGSRIVIITAGVRSL--V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 ---eal~dADiVIitag~~~k--~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+...|++|..+|.... + ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS 152 (252)
T 3f1l_A 85 RIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSS 152 (252)
T ss_dssp HHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECC
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECC
Confidence 123478999999986321 1 1222 223445543 4455555555543 455666654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.15 Score=51.97 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHH-hhhC------CCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 152 QTMARDAVSTVDRLL-SQVA------PSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~------~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
-.+++.+...+.... ++.. .......++|+|||.|.||..+|..+..-|. +|..+|++....+. ..++.
T Consensus 132 L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-~~~~g- 207 (351)
T 3jtm_A 132 LILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC--NLLYHDRLQMAPEL-EKETG- 207 (351)
T ss_dssp HHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC--EEEEECSSCCCHHH-HHHHC-
T ss_pred HHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCC--EEEEeCCCccCHHH-HHhCC-
Confidence 357777777664432 1110 0134577899999999999999998876666 89999987533321 11211
Q ss_pred cCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 225 GAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 225 ~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+....++ +.+++||+|+++..... .++ .++ | .+ .+....|.+++|+++.
T Consensus 208 ---------~~~~~~l~ell~~aDvV~l~~Plt~---~t~-~li--~----~~---~l~~mk~gailIN~aR 257 (351)
T 3jtm_A 208 ---------AKFVEDLNEMLPKCDVIVINMPLTE---KTR-GMF--N----KE---LIGKLKKGVLIVNNAR 257 (351)
T ss_dssp ---------CEECSCHHHHGGGCSEEEECSCCCT---TTT-TCB--S----HH---HHHHSCTTEEEEECSC
T ss_pred ---------CeEcCCHHHHHhcCCEEEECCCCCH---HHH-Hhh--c----HH---HHhcCCCCCEEEECcC
Confidence 1223455 46899999999963211 111 111 1 11 2333457899999874
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0033 Score=63.09 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=30.4
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|+||.++++.++.+++++|++++|
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~D 38 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIID 38 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 59999999999999999999999999999987
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.11 Score=52.80 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHHH-hhhC-----------CCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHH
Q psy12825 152 QTMARDAVSTVDRLL-SQVA-----------PSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEM 219 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~-----------~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~ 219 (488)
-.+++.+...++... ++.. .......++|+|||.|.||..++..+...|. +|..+|++.+.. ..
T Consensus 131 L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~--~~ 206 (347)
T 1mx3_A 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF--NVLFYDPYLSDG--VE 206 (347)
T ss_dssp HHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECTTSCTT--HH
T ss_pred HHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCC--EEEEECCCcchh--hH
Confidence 457777776664421 1110 0124577899999999999999998876665 899999865431 11
Q ss_pred HHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 220 LDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 220 ~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.. +....++ +.+++||+|+++..... .++ .++ | . +.+....|.+++|+++.
T Consensus 207 ~~~g----------~~~~~~l~ell~~aDvV~l~~P~t~---~t~-~li--~----~---~~l~~mk~gailIN~ar 260 (347)
T 1mx3_A 207 RALG----------LQRVSTLQDLLFHSDCVTLHCGLNE---HNH-HLI--N----D---FTVKQMRQGAFLVNTAR 260 (347)
T ss_dssp HHHT----------CEECSSHHHHHHHCSEEEECCCCCT---TCT-TSB--S----H---HHHTTSCTTEEEEECSC
T ss_pred hhcC----------CeecCCHHHHHhcCCEEEEcCCCCH---HHH-HHh--H----H---HHHhcCCCCCEEEECCC
Confidence 1110 1122345 45889999999863211 011 111 1 1 22344467888888863
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0027 Score=63.81 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=30.2
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|+||.++||+++.+++++|++++|
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D 32 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVD 32 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 38999999999999999999999999999987
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.051 Score=54.11 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccC-----CC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSE-----GS 246 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~-----dA 246 (488)
++.++|.|+|| |.+|..++..|+..| . +|+++|.+..... ...+... .....+.-.... +.++ ++
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~--~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~ 116 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTK--FVNLVDL---NIADYMDKEDFLIQIMAGEEFGDV 116 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGG--GGGTTTS---CCSEEEEHHHHHHHHHTTCCCSSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcch--hhcccCc---eEeeecCcHHHHHHHHhhcccCCC
Confidence 34578999999 999999999999987 5 8999998654311 0111110 000111100111 2344 59
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|+||.+++..........+.+..|+.-...+.+.+.+... .+|++|
T Consensus 117 d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S 162 (357)
T 2x6t_A 117 EAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 162 (357)
T ss_dssp CEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred CEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 9999998764432334556677888888888888877654 455554
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.24 Score=47.56 Aligned_cols=116 Identities=11% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------ 241 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------ 241 (488)
...+.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... . .++. ...|. +
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~--~~~~~~~~Dl~~~~~v~~~~ 90 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY--G--VETMAFRCDVSNYEEVKKLL 90 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH--C--CCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc--C--CeEEEEEcCCCCHHHHHHHH
Confidence 4455678999998 9999999999999986 89999999888776666662211 0 1111 12232 1
Q ss_pred -----ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 91 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS 158 (267)
T 1vl8_A 91 EAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGS 158 (267)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence 1237899999998653211 111 223444543 3344455554433 345666653
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.097 Score=51.97 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=32.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+..||.|||+|.+|+.++..|+..|+ .+|.|+|.|.
T Consensus 34 L~~~~VlVvGaGGlGs~va~~La~aGV-G~i~lvD~D~ 70 (292)
T 3h8v_A 34 IRTFAVAIVGVGGVGSVTAEMLTRCGI-GKLLLFDYDK 70 (292)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred HhCCeEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCc
Confidence 455699999999999999999999986 5899999765
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.23 Score=48.15 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|+++|++++.++....++... ...... +|.+
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~ 98 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGCG------AAACRVDVSDEQQIIAMVDACV 98 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCSS------CEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCCc------ceEEEecCCCHHHHHHHHHHHH
Confidence 44567888898 9999999999999987 8999999998887666555211 111111 1221
Q ss_pred -ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 99 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS 162 (277)
T 3gvc_A 99 AAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS 162 (277)
T ss_dssp HHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 234789999999864321 1222 234455554 345555555443 3566777754
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.085 Score=52.49 Aligned_cols=112 Identities=11% Similarity=0.155 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC---CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS---IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP 227 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~---~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~ 227 (488)
-.+++.+...+... .++.... .....++|+|||.|.||..+|..+...|. +|..+|++.+ +. ..
T Consensus 95 L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~--~V~~~dr~~~--~~------~~-- 162 (303)
T 1qp8_A 95 LAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGA--QVRGFSRTPK--EG------PW-- 162 (303)
T ss_dssp HHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTC--EEEEECSSCC--CS------SS--
T ss_pred HHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEECCCcc--cc------Cc--
Confidence 45777777776543 2222111 24577899999999999999998877676 8999998764 11 10
Q ss_pred CCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 228 FLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 228 ~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
....++ +.+++||+|+++..... .-..++ | .+.+....|.+++|+++.
T Consensus 163 -------~~~~~l~ell~~aDvV~l~~P~~~----~t~~~i--~-------~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 163 -------RFTNSLEEALREARAAVCALPLNK----HTRGLV--K-------YQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp -------CCBSCSHHHHTTCSEEEECCCCST----TTTTCB--C-------HHHHTTSCTTCEEEECSC
T ss_pred -------ccCCCHHHHHhhCCEEEEeCcCch----HHHHHh--C-------HHHHhhCCCCCEEEECCC
Confidence 012345 56899999999963211 111111 1 123344567898888874
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.19 Score=48.64 Aligned_cols=113 Identities=16% Similarity=0.256 Sum_probs=70.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~---e-------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++... . ++.. ..|. +
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~--~~~~~~~Dv~d~~~v~~~~~~ 98 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAY----G--DCQAIPADLSSEAGARRLAQA 98 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTS----S--CEEECCCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----C--ceEEEEeeCCCHHHHHHHHHH
Confidence 34568999998 9999999999999986 8999999988777666666421 1 2221 1221 1
Q ss_pred ---ccCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCC---CcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSP---DCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p---~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+ -...+..|+. +.+.+.+.+.+... .+.||+++-
T Consensus 99 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS 168 (276)
T 2b4q_A 99 LGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS 168 (276)
T ss_dssp HHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 134789999999864321 111 2234445543 34555666654432 156777654
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.018 Score=57.10 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCCceEEEEecccchHH-HHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIi 251 (488)
|+++||+|||+|.+|.. ++..+....- .+|+ ++|+++++++..+.... . . ..+|++++ .++|+|++
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~-~~lvav~d~~~~~~~~~~~~~g-~-------~--~~~~~~~l~~~~D~V~i 71 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASD-WTLQGAWSPTRAKALPICESWR-I-------P--YADSLSSLAASCDAVFV 71 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSS-EEEEEEECSSCTTHHHHHHHHT-C-------C--BCSSHHHHHTTCSEEEE
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCC-eEEEEEECCCHHHHHHHHHHcC-C-------C--ccCcHHHhhcCCCEEEE
Confidence 45689999999999986 7777754321 2555 99999988765443321 0 1 34566655 68999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 72 ~t 73 (319)
T 1tlt_A 72 HS 73 (319)
T ss_dssp CS
T ss_pred eC
Confidence 85
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.13 Score=49.61 Aligned_cols=113 Identities=13% Similarity=0.175 Sum_probs=71.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd---~e-------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.... .++.. ..| .+
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 96 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG-----HDAEAVAFDVTSESEIIEAFAR 96 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT-----CCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 45667888898 9999999999999987 89999999998887777776531 12221 122 21
Q ss_pred ---ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+. ...+..|+. +.+...+.+.+.. .+.||+++-
T Consensus 97 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS 162 (271)
T 4ibo_A 97 LDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGS 162 (271)
T ss_dssp HHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence 1237899999998653211 122 223444543 4455555555443 355676653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.058 Score=50.64 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=59.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal 243 (488)
..+.+++|.|+|| |.+|..++..|+..| . +|++++++++.+.. .. .....+. ..| . +++
T Consensus 19 ~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~~~-------~~--~~~~~~~-~~Dl~d~~~~~~~~ 86 (236)
T 3qvo_A 19 FQGHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKIHK-------PY--PTNSQII-MGDVLNHAALKQAM 86 (236)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGSCS-------SC--CTTEEEE-ECCTTCHHHHHHHH
T ss_pred ecCcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhhcc-------cc--cCCcEEE-EecCCCHHHHHHHh
Confidence 3445678999998 999999999999888 5 89999998765431 10 1111222 223 2 358
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+++|+||.+++.. ..+ ...+.+.+.+++.... .+|++|-
T Consensus 87 ~~~D~vv~~a~~~------~~~------~~~~~~~~~~~~~~~~-~iV~iSS 125 (236)
T 3qvo_A 87 QGQDIVYANLTGE------DLD------IQANSVIAAMKACDVK-RLIFVLS 125 (236)
T ss_dssp TTCSEEEEECCST------THH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred cCCCEEEEcCCCC------chh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence 8999999987531 111 1234556666655433 4555553
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.13 Score=48.14 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=68.8
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----c
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----M 242 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----a 242 (488)
.++|.|+|+ |.+|..++..|+..|... +|+++|++.+.++....++... ..++. ...|. + .
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~ 76 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE-----GALTDTITADISDMADVRRL 76 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT-----TCEEEEEECCTTSHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc-----CCeeeEEEecCCCHHHHHHH
Confidence 357899998 999999999999887522 7999999988777666666432 11222 12232 1 1
Q ss_pred -------cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 -------SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 -------l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.|+||.++|...... .+ ....+..|+. +.+.+.+.+.+. ..+.+|+++-.
T Consensus 77 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~ 146 (244)
T 2bd0_A 77 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSV 146 (244)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred HHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence 237999999998653211 11 2233444543 334444444433 34567777643
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.18 Score=48.70 Aligned_cols=78 Identities=10% Similarity=0.244 Sum_probs=53.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----c---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----M--- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----a--- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... ....++. ...|. + .
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSG--VSEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC--CCCcceEEEEecCCCHHHHHHHHHH
Confidence 44567888898 9999999999999987 89999999988876666665321 0000222 22232 1 1
Q ss_pred ----cCCCcEEEEecccc
Q psy12825 243 ----SEGSRIVIITAGVR 256 (488)
Q Consensus 243 ----l~dADiVIitag~~ 256 (488)
+...|++|..+|..
T Consensus 80 ~~~~~g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAA 97 (280)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHhcCCCCEEEECCCCC
Confidence 23689999999864
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.25 Score=49.16 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEe-CChhHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLID-SNEDRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~D-i~~e~l~g~~~dL~ 223 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.| ++++.++....++.
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~~~~~~~~~~l~ 92 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLN 92 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence 34567888898 9999999999999987 899999 99888877666664
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.35 Score=46.48 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=70.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.+++.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++. ...|. +
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 91 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG-----LNVEGSVCDLLSRTERDKLMQT 91 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHHH
Confidence 45578999998 9999999999999986 89999999888776666665421 1221 12232 1
Q ss_pred ---cc-CCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 ---MS-EGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 ---al-~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+ ...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-.
T Consensus 92 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~ 159 (273)
T 1ae1_A 92 VAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSI 159 (273)
T ss_dssp HHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCG
T ss_pred HHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCH
Confidence 12 5789999999864321 1122 223344543 3444444554433 3567777643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.044 Score=55.71 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=53.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-eal~dADiVIi 251 (488)
.++.+|.|+|+|.+|..++..+...|. +|+++|+++++++.......+. ..+... .+. +.++++|+||.
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~DvVI~ 236 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSR------VELLYSNSAEIETAVAEADLLIG 236 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG------SEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCce------eEeeeCCHHHHHHHHcCCCEEEE
Confidence 456899999999999999998888786 8999999998887543322221 111111 122 45779999999
Q ss_pred eccccc
Q psy12825 252 TAGVRS 257 (488)
Q Consensus 252 tag~~~ 257 (488)
+.+.+.
T Consensus 237 ~~~~~~ 242 (361)
T 1pjc_A 237 AVLVPG 242 (361)
T ss_dssp CCCCTT
T ss_pred CCCcCC
Confidence 987543
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.022 Score=57.39 Aligned_cols=116 Identities=11% Similarity=0.136 Sum_probs=70.2
Q ss_pred hhhHHHHHHH-HHHH-HhhhCC---CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVST-VDRL-LSQVAP---SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivli-d~~~-~~e~~~---~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+... +... .++... ......++|+|||.|.||..+|..+..-|. +|..||++.+..+.
T Consensus 107 L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~--------- 175 (324)
T 3evt_A 107 LSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGM--HVIGVNTTGHPADH--------- 175 (324)
T ss_dssp HHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSCCCCTT---------
T ss_pred HHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHHHHHHHhCCC--EEEEECCCcchhHh---------
Confidence 3566776665 5432 111111 134567899999999999999998877676 89999987643211
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
........++ +.+++||+|+++.... .+...++ | .+.+....|.+++|+++-
T Consensus 176 ----~~~~~~~~~l~ell~~aDvV~l~lPlt----~~t~~li--~-------~~~l~~mk~gailIN~aR 228 (324)
T 3evt_A 176 ----FHETVAFTATADALATANFIVNALPLT----PTTHHLF--S-------TELFQQTKQQPMLINIGR 228 (324)
T ss_dssp ----CSEEEEGGGCHHHHHHCSEEEECCCCC----GGGTTCB--S-------HHHHHTCCSCCEEEECSC
T ss_pred ----HhhccccCCHHHHHhhCCEEEEcCCCc----hHHHHhc--C-------HHHHhcCCCCCEEEEcCC
Confidence 0122233455 4688999999986211 0111111 1 122444567899999873
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.18 Score=48.11 Aligned_cols=112 Identities=10% Similarity=0.124 Sum_probs=71.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----cc--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MS-- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al-- 243 (488)
++.+++.|+|| |.+|..++..|+..|. +|++.|++++.++....++.... .++. ...| .+ .+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 77 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG-----GRIVARSLDARNEDEVTAFLNA 77 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CeEEEEECcCCCHHHHHHHHHH
Confidence 35578899998 8999999999999987 89999999998887777776531 1222 1223 21 12
Q ss_pred ----CCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 244 ----EGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 244 ----~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+.. .+.||+++
T Consensus 78 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is 141 (252)
T 3h7a_A 78 ADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTG 141 (252)
T ss_dssp HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred HHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence 25799999998654211 121 223444433 4455555555543 45566665
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.2 Score=48.26 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=70.3
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc---------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA--------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e--------- 241 (488)
.++.+++.|+|+ |.+|.+++..|+..|. +|++.|++++.++....++... ...... +|.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~Dv~~~~~v~~~~~~~ 79 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGRG------AVHHVVDLTNEVSVRALIDFT 79 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCTT------CEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCC------eEEEECCCCCHHHHHHHHHHH
Confidence 345678899998 9999999999999987 8999999988887666555211 111111 1211
Q ss_pred --ccCCCcEEEEecccccC-CC----cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSL-VG----ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k-~G----~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..++.... .. .+ ....+..|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 80 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS 146 (271)
T 3tzq_B 80 IDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISS 146 (271)
T ss_dssp HHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence 22378999999986522 11 12 1234555654 344444444543 3466777753
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.21 Score=47.51 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=70.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----ccC-
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MSE- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al~- 244 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.... . ..++. ...| .+ .++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~~D~~~~~~v~~~~~~ 79 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLV--S-GAQVDIVAGDIREPGDIDRLFEK 79 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHS--T-TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--C-CCeEEEEEccCCCHHHHHHHHHH
Confidence 34568999998 9999999999999986 89999999888776666665321 0 10121 1223 21 122
Q ss_pred -----CCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 245 -----GSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 245 -----dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.|++|..+|..... ..+ ....+..|+.- .+.+.+.+.+.. .+.||+++-
T Consensus 80 ~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 144 (260)
T 2z1n_A 80 ARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS 144 (260)
T ss_dssp HHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence 499999999864321 111 22334555443 355555555443 355666653
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.032 Score=55.75 Aligned_cols=70 Identities=9% Similarity=0.094 Sum_probs=47.1
Q ss_pred CCCCceEEEEecccchHHHHHHHH-HcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSIL-TQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRI 248 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La-~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADi 248 (488)
.++++||+|||+|.+|...+..+. ...- .+ +.++|+++++++..+..+ . .. ...+|+++ ++ ++|+
T Consensus 5 ~~~~~~v~iiG~G~ig~~~~~~l~~~~~~-~~~vav~d~~~~~~~~~a~~~------g-~~--~~~~~~~~~l~~~~~D~ 74 (346)
T 3cea_A 5 TRKPLRAAIIGLGRLGERHARHLVNKIQG-VKLVAACALDSNQLEWAKNEL------G-VE--TTYTNYKDMIDTENIDA 74 (346)
T ss_dssp CCCCEEEEEECCSTTHHHHHHHHHHTCSS-EEEEEEECSCHHHHHHHHHTT------C-CS--EEESCHHHHHTTSCCSE
T ss_pred CCCcceEEEEcCCHHHHHHHHHHHhcCCC-cEEEEEecCCHHHHHHHHHHh------C-CC--cccCCHHHHhcCCCCCE
Confidence 356789999999999998888876 3322 25 468899998776433221 1 11 23457743 54 7999
Q ss_pred EEEec
Q psy12825 249 VIITA 253 (488)
Q Consensus 249 VIita 253 (488)
|+++.
T Consensus 75 V~i~t 79 (346)
T 3cea_A 75 IFIVA 79 (346)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99985
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.066 Score=48.71 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=66.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC---Cc----cccC---CC
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS---DI----AMSE---GS 246 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt---d~----eal~---dA 246 (488)
++|.|+|+ |.+|..++..|+.+ +|+++|++++.++....++.. . .... |+ +.++ +.
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~--------~-~~~~D~~~~~~~~~~~~~~~~i 67 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGA--------R-ALPADLADELEAKALLEEAGPL 67 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTC--------E-ECCCCTTSHHHHHHHHHHHCSE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccC--------c-EEEeeCCCHHHHHHHHHhcCCC
Confidence 47899999 99999999988877 899999998877655444421 1 1111 22 2233 89
Q ss_pred cEEEEecccccCC------CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 247 RIVIITAGVRSLV------GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 247 DiVIitag~~~k~------G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
|+||.+++..... .......+..|+.-...+.+.+.+. +.+.+|+++-.
T Consensus 68 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~ 122 (207)
T 2yut_A 68 DLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAY 122 (207)
T ss_dssp EEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCC
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence 9999999864321 1123345666776666666666332 33556666643
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.1 Score=55.39 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=52.1
Q ss_pred CceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
.+||.|||.|..|.+ +|..|...|. +|...|.++... ...|... ...+....+.+.+.++|+||.+.++
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~--~V~~~D~~~~~~---~~~l~~~-----gi~~~~g~~~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGY--QISGSDLAPNSV---TQHLTAL-----GAQIYFHHRPENVLDASVVVVSTAI 91 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTC--EEEEECSSCCHH---HHHHHHT-----TCEEESSCCGGGGTTCSEEEECTTS
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCC--eEEEEECCCCHH---HHHHHHC-----CCEEECCCCHHHcCCCCEEEECCCC
Confidence 569999999999996 8988888887 899999865422 2234432 1244444456778999999999877
Q ss_pred cc
Q psy12825 256 RS 257 (488)
Q Consensus 256 ~~ 257 (488)
+.
T Consensus 92 ~~ 93 (494)
T 4hv4_A 92 SA 93 (494)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.2 Score=48.33 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
++.+++.|+|| |.+|..++..|+..|. +|+++|++++.++....++..... ....... +|.+
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 100 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGL---EGRGAVLNVNDATAVDALVESTL 100 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTC---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC---cEEEEEEeCCCHHHHHHHHHHHH
Confidence 44567888898 9999999999999987 899999999888877777765321 1111111 1221
Q ss_pred -ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+.-|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS 164 (270)
T 3ftp_A 101 KEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS 164 (270)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence 233789999999865321 1122 223445543 344445455443 3466777653
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.049 Score=54.10 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh----HHHHHHHHHhhcCCCCCCCcEEEcCC---c----cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED----RCKGEMLDLQHGAPFLRSPKIESGSD---I----AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e----~l~g~~~dL~~~~~~~~~~~v~~ttd---~----ea 242 (488)
+++++|.|+|| |.+|+.++..|+..|. +|+++|++.. .++.....+.... .....+. ..| . +.
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~Dl~d~~~~~~~ 99 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQ--WSNFKFI-QGDIRNLDDCNNA 99 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHH--HTTEEEE-ECCTTSHHHHHHH
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhccccc--CCceEEE-ECCCCCHHHHHHH
Confidence 34579999999 9999999999999886 8999998542 2332221111100 0011121 223 2 35
Q ss_pred cCCCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++++|+||.+++..... .....+.+..|+.-...+.+.+.+.... .+|++|
T Consensus 100 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S 152 (352)
T 1sb8_A 100 CAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAA 152 (352)
T ss_dssp HTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred hcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 78999999998753211 0123345667777777788877765433 355554
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.2 Score=48.43 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=71.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---cc----c---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---AM----S--- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---ea----l--- 243 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.... .... ....|. ++ +
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~-~~~~Dv~~~~~~~~~~~~~ 104 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG---GTAQ-ELAGDLSEAGAGTDLIERA 104 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT---CCEE-EEECCTTSTTHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CeEE-EEEecCCCHHHHHHHHHHH
Confidence 34567888898 9999999999999987 89999999888877777775421 1111 122232 11 1
Q ss_pred ---CCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 ---EGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ---~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS 168 (275)
T 4imr_A 105 EAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK-WGRVVSIGS 168 (275)
T ss_dssp HHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence 36899999998643211 122 223444543 4455555555443 456777653
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.15 Score=48.60 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=68.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM-------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea-------- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++... ..+ ...| .++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~-~~~D~~~~~~~~~~~~~~ 73 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDA------ARY-QHLDVTIEEDWQRVVAYA 73 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGG------EEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc------eeE-EEecCCCHHHHHHHHHHH
Confidence 45678999998 9999999999999987 8999999988776544443111 011 1122 211
Q ss_pred ---cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 ---SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 ---l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|++|..+|...... .+ ....+..|+. ..+.+.+.+.+.. .+.||+++-
T Consensus 74 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 138 (254)
T 1hdc_A 74 REEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS 138 (254)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence 237999999998653211 11 1233444543 3356666665543 355676653
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.04 Score=54.50 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=49.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.+.+++.|+|+|.+|.++++.|...|. .+|.+++++.++++..+.++ ......+.+++ ++|+||.+..
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~-~~v~v~nRt~~ka~~La~~~----------~~~~~~~l~~l-~~DivInaTp 187 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFA-KDIYVVTRNPEKTSEIYGEF----------KVISYDELSNL-KGDVIINCTP 187 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTC-SEEEEEESCHHHHHHHCTTS----------EEEEHHHHTTC-CCSEEEECSS
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHhc----------CcccHHHHHhc-cCCEEEECCc
Confidence 456799999999999999999988774 58999999988766543221 11112233335 8999999864
Q ss_pred c
Q psy12825 255 V 255 (488)
Q Consensus 255 ~ 255 (488)
.
T Consensus 188 ~ 188 (282)
T 3fbt_A 188 K 188 (282)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0041 Score=62.48 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=30.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|.||.++|+.++.+++.+|++++|
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~D 39 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLID 39 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 59999999999999999999999999999998
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.11 Score=49.98 Aligned_cols=97 Identities=12% Similarity=0.146 Sum_probs=62.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiV 249 (488)
|||.|+|| |.+|..++..|... +. +|++++++++++.. +.. ....+... +|. ++++++|+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~~~----~~~-----~~v~~~~~D~~d~~~l~~~~~~~d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKVPD----DWR-----GKVSVRQLDYFNQESMVEAFKGMDTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGSCG----GGB-----TTBEEEECCTTCHHHHHHHTTTCSEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHHHH----hhh-----CCCEEEEcCCCCHHHHHHHHhCCCEE
Confidence 58999998 99999999998776 55 89999998765431 111 11222221 122 368999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++.... ...|+...+.+++.+.+..... +|++|
T Consensus 70 i~~a~~~~~--------~~~~~~~~~~l~~aa~~~gv~~-iv~~S 105 (289)
T 3e48_A 70 VFIPSIIHP--------SFKRIPEVENLVYAAKQSGVAH-IIFIG 105 (289)
T ss_dssp EECCCCCCS--------HHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred EEeCCCCcc--------chhhHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 999864321 1235666677777777765443 44443
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.28 Score=47.64 Aligned_cols=112 Identities=13% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A--------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e--------- 241 (488)
+.+.+.|+|| |.+|..++..|+..|. +|+++|++.+.++....++.... .++. ...|. +
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~ 99 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG-----GQAIALEADVSDELQMRNAVRDL 99 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT-----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHHHH
Confidence 4567888998 9999999999999987 89999999988887777775421 1221 22232 1
Q ss_pred --ccCCCcEEEEecccccC--C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSL--V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k--~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.... + ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 100 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS 165 (283)
T 3v8b_A 100 VLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSS 165 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcC
Confidence 12378999999986422 2 1222 233445543 4455555555543 456777654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.32 Score=47.34 Aligned_cols=115 Identities=10% Similarity=0.105 Sum_probs=69.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHH-HHhhcCCCCCCCcEE-EcCCc---c------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEML-DLQHGAPFLRSPKIE-SGSDI---A------ 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~-dL~~~~~~~~~~~v~-~ttd~---e------ 241 (488)
.++.++|.|+|+ |.+|.+++..|+..|. +|++.|++.+....... .+... ..++. ...|. +
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~ 116 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE-----GVKCVLLPGDLSDEQHCKDIV 116 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT-----TCCEEEEESCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-----CCcEEEEECCCCCHHHHHHHH
Confidence 456678999998 9999999999999987 89999998754332222 33321 11222 22232 1
Q ss_pred -----ccCCCcEEEEecccccCCC----cc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRSLVG----ET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~G----~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|..++.....+ .+ -...+.-|+.-...+.+.+..+ ...+.||+++-
T Consensus 117 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS 183 (291)
T 3ijr_A 117 QETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS 183 (291)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence 1236899999988643211 12 2334566665555555555544 23456777653
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.085 Score=53.55 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=77.5
Q ss_pred CcEEEEec-chhHHHHH-HHH-HhhhhHHHHHHHHHHHH--hhhCC-----CCCCCCceEEEEecccchHHHHHHHHHcC
Q psy12825 131 QKITVVGA-GQVGMACT-YSI-LTQTMARDAVSTVDRLL--SQVAP-----SIESPDQKITVVGAGQVGMACTYSILTQG 200 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a-~~~-~~k~la~eivlid~~~~--~e~~~-----~~~~~~~KIaIIGAG~vG~~ia~~La~~~ 200 (488)
..|.|.-+ |.-.-+.| |++ ++-.+++.+...+.... +++.- ......++|+|||.|.||..+|..+..-|
T Consensus 92 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G 171 (343)
T 2yq5_A 92 YNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMG 171 (343)
T ss_dssp --CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHHHHHHHHhhCC
Confidence 35655543 22223333 333 22357788877776543 21100 03446789999999999999999887666
Q ss_pred CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHH
Q psy12825 201 IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIP 279 (488)
Q Consensus 201 l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~ 279 (488)
. +|..||++.+. .... . +... ++ +.+++||+|+++..... .++ .++ |. +
T Consensus 172 ~--~V~~~d~~~~~------~~~~------~--~~~~-~l~ell~~aDvV~l~~Plt~---~t~-~li--~~-------~ 221 (343)
T 2yq5_A 172 A--KVIAYDVAYNP------EFEP------F--LTYT-DFDTVLKEADIVSLHTPLFP---STE-NMI--GE-------K 221 (343)
T ss_dssp C--EEEEECSSCCG------GGTT------T--CEEC-CHHHHHHHCSEEEECCCCCT---TTT-TCB--CH-------H
T ss_pred C--EEEEECCChhh------hhhc------c--cccc-CHHHHHhcCCEEEEcCCCCH---HHH-HHh--hH-------H
Confidence 6 89999997653 1111 1 1222 55 46889999999863211 111 111 11 2
Q ss_pred HHhccCCCcEEEEEe
Q psy12825 280 KIAKGSPDCILLIIS 294 (488)
Q Consensus 280 ~I~~~~p~a~vIv~T 294 (488)
.+....|.+++|+++
T Consensus 222 ~l~~mk~gailIN~a 236 (343)
T 2yq5_A 222 QLKEMKKSAYLINCA 236 (343)
T ss_dssp HHHHSCTTCEEEECS
T ss_pred HHhhCCCCcEEEECC
Confidence 234446789999887
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.033 Score=57.60 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=52.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|+|||+|.+|..++..+...|. .+|+++|++.++++..+.++.. .+....++ +.+.++|+||.+.
T Consensus 165 l~g~~VlIiGaG~iG~~~a~~l~~~G~-~~V~v~~r~~~ra~~la~~~g~--------~~~~~~~l~~~l~~aDvVi~at 235 (404)
T 1gpj_A 165 LHDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLGG--------EAVRFDELVDHLARSDVVVSAT 235 (404)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHTC--------EECCGGGHHHHHHTCSEEEECC
T ss_pred ccCCEEEEEChHHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC--------ceecHHhHHHHhcCCCEEEEcc
Confidence 467899999999999999998887774 4899999998877555554421 11111233 4578999999997
Q ss_pred ccc
Q psy12825 254 GVR 256 (488)
Q Consensus 254 g~~ 256 (488)
+.+
T Consensus 236 ~~~ 238 (404)
T 1gpj_A 236 AAP 238 (404)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.29 Score=46.53 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=65.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++. +....++.. .+ ...| .+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~-~~~~~~~~~--------~~-~~~D~~~~~~~~~~~~~~ 71 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEG-KEVAEAIGG--------AF-FQVDLEDERERVRFVEEA 71 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTH-HHHHHHHTC--------EE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhH-HHHHHHhhC--------CE-EEeeCCCHHHHHHHHHHH
Confidence 45578999998 9999999999999986 89999998776 444444321 11 1122 11
Q ss_pred --ccCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+ -...+..|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 72 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS 136 (256)
T 2d1y_A 72 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVAS 136 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 134789999999864321 112 1234455554 334444444443 2456777653
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.046 Score=53.66 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=68.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh--HHHHHHHHHhhcCCCCCCCcEE-EcCC---c----cccC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED--RCKGEMLDLQHGAPFLRSPKIE-SGSD---I----AMSE 244 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e--~l~g~~~dL~~~~~~~~~~~v~-~ttd---~----eal~ 244 (488)
+.|||.|+|| |.+|.+++..|+..+...+|+.+|++.. ..+ .+.+.. ...++. ...| . +.+.
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~----~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~ 74 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPA----NLKDLE---DDPRYTFVKGDVADYELVKELVR 74 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG----GGTTTT---TCTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchh----HHhhhc---cCCceEEEEcCCCCHHHHHHHhh
Confidence 4578999998 9999999999998863348999997531 111 111110 011222 1223 2 2457
Q ss_pred CCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++|+||.+++..... .....+++..|+.-...+.+.+.+......+|++|
T Consensus 75 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S 126 (336)
T 2hun_A 75 KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVS 126 (336)
T ss_dssp TCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 899999998754210 01234456778888888888877764334566665
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.12 Score=48.20 Aligned_cols=113 Identities=12% Similarity=0.198 Sum_probs=68.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---cc----------
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---AM---------- 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---ea---------- 242 (488)
++|.|+|| |.+|..++..|+..|. +|+++ +++++.++....++.... .........|. +.
T Consensus 2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T 2ph3_A 2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRG---SPLVAVLGANLLEAEAATALVHQAAE 76 (245)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTT---CSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CceEEEEeccCCCHHHHHHHHHHHHH
Confidence 57889998 9999999999999886 78887 888887776655554321 11112122232 11
Q ss_pred -cCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 -SEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 -l~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.|+||..++..... ..+ ....+..|+.- .+.+.+.+.+.. ...+|+++-.
T Consensus 77 ~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~ 140 (245)
T 2ph3_A 77 VLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSV 140 (245)
T ss_dssp HHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeCh
Confidence 34789999999865321 111 22334455443 555555555443 3556776643
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.16 Score=49.08 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=67.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c-----------c
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I-----------A 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~-----------e 241 (488)
+++.|+|| |.+|..++..|+..|. +|+++|++++.++....++... .++. ...| . +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~~ 93 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK------TRVLPLTLDVRDRAAMSAAVDNLPE 93 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT------SCEEEEECCTTCHHHHHHHHHTCCG
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC------CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 57888898 9999999999999986 8999999988887666665431 1111 1122 1 1
Q ss_pred ccCCCcEEEEecccccC--C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 MSEGSRIVIITAGVRSL--V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 al~dADiVIitag~~~k--~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.... + ..+. ...+..|+. ..+.+.+.+.+......||+++-
T Consensus 94 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS 158 (272)
T 2nwq_A 94 EFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS 158 (272)
T ss_dssp GGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 12345999999986432 1 1111 223444543 34555666655443315666653
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.027 Score=55.44 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=45.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEE
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIi 251 (488)
|+++||+|+|| |.||..++..+...+-. +|+ .+|.+.....+ .|+....... ..+..++|++ .+.++|+||.
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G--~d~gel~g~~--~gv~v~~dl~~ll~~~DVVID 79 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLG--QDAGAFLGKQ--TGVALTDDIERVCAEADYLID 79 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTT--SBTTTTTTCC--CSCBCBCCHHHHHHHCSEEEE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCccccc--ccHHHHhCCC--CCceecCCHHHHhcCCCEEEE
Confidence 67799999995 99999998888766422 444 46876432221 2222221111 1344456774 4778999998
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
..
T Consensus 80 fT 81 (272)
T 4f3y_A 80 FT 81 (272)
T ss_dssp CS
T ss_pred cC
Confidence 74
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.11 Score=48.74 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=68.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----cc--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MS-- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al-- 243 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... . .++. ...| .+ .+
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~~~~~~~~ 78 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY--G--VKAHGVEMNLLSEESINKAFEE 78 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH--C--CCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc--C--CceEEEEccCCCHHHHHHHHHH
Confidence 45678899998 9999999999999886 89999999887776655554311 0 1121 1222 21 12
Q ss_pred -----CCCcEEEEecccccCCC---cc---hHhhHhhhHHHH----HHHHHHHhccCCCcEEEEEe
Q psy12825 244 -----EGSRIVIITAGVRSLVG---ET---RLQLVDRNVKIF----KDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 244 -----~dADiVIitag~~~k~G---~~---r~dll~~N~~ii----~ei~~~I~~~~p~a~vIv~T 294 (488)
.+.|+||.+++...... .+ ..+.+..|+.-. +.+.+.+.+.. .+.+|+++
T Consensus 79 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~s 143 (248)
T 2pnf_A 79 IYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNIS 143 (248)
T ss_dssp HHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEEC
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence 37999999998653211 11 223445555433 44444444332 34566665
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.034 Score=56.27 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=48.2
Q ss_pred CCCCCceEEEEecccchHHHHHHHH-HcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCc
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSIL-TQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La-~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dAD 247 (488)
..|+++||+|||+|.+|...+..+. ...-. +| .++|+++++++..+..+.- .....+|+++ +. +.|
T Consensus 19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a~~~g~--------~~~~~~~~~~ll~~~~~D 89 (357)
T 3ec7_A 19 FQGMTLKAGIVGIGMIGSDHLRRLANTVSGV-EVVAVCDIVAGRAQAALDKYAI--------EAKDYNDYHDLINDKDVE 89 (357)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTCTTE-EEEEEECSSTTHHHHHHHHHTC--------CCEEESSHHHHHHCTTCC
T ss_pred cCCCeeeEEEECCcHHHHHHHHHHHhhCCCc-EEEEEEeCCHHHHHHHHHHhCC--------CCeeeCCHHHHhcCCCCC
Confidence 4456789999999999998888887 33222 54 4899999888765544420 1223467743 43 699
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
+|+++.
T Consensus 90 ~V~i~t 95 (357)
T 3ec7_A 90 VVIITA 95 (357)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999985
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.08 Score=53.41 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=69.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
++++|.|+|| |.+|.+++..|+..+. +|+++|++.+.... +.. ....+... +|. ++++++|+
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~-----~~v~~~~~Dl~d~~~~~~~~~~~d~ 96 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT----EDM-----FCDEFHLVDLRVMENCLKVTEGVDH 96 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC----GGG-----TCSEEEECCTTSHHHHHHHHTTCSE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh----hcc-----CCceEEECCCCCHHHHHHHhCCCCE
Confidence 5679999999 9999999999999886 89999987643211 000 01122221 122 35789999
Q ss_pred EEEecccccCC---CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLV---GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~---G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..... .....+.+..|+.-...+.+.+.+..... +|++|
T Consensus 97 Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-~V~~S 144 (379)
T 2c5a_A 97 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR-FFYAS 144 (379)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred EEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence 99998754211 12345566778888888888877664443 45444
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.069 Score=52.52 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=64.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
...+.++|+|||+|.+|..++..+...|. +|..+|++.++++.. .++ ........+. +.++++|+||+
T Consensus 151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~~~-~~~--------g~~~~~~~~l~~~l~~aDvVi~ 219 (293)
T 3d4o_A 151 FTIHGANVAVLGLGRVGMSVARKFAALGA--KVKVGARESDLLARI-AEM--------GMEPFHISKAAQELRDVDVCIN 219 (293)
T ss_dssp SCSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHH-HHT--------TSEEEEGGGHHHHTTTCSEEEE
T ss_pred CCCCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHH-HHC--------CCeecChhhHHHHhcCCCEEEE
Confidence 34577899999999999999998887776 899999988755422 111 1122212344 45899999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe-CCchh
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS-NPVDV 299 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T-NPvdi 299 (488)
+... ++ + |. ..+....|.+++|+++ +|.++
T Consensus 220 ~~p~----~~-----i--~~-------~~l~~mk~~~~lin~ar~~~~~ 250 (293)
T 3d4o_A 220 TIPA----LV-----V--TA-------NVLAEMPSHTFVIDLASKPGGT 250 (293)
T ss_dssp CCSS----CC-----B--CH-------HHHHHSCTTCEEEECSSTTCSB
T ss_pred CCCh----HH-----h--CH-------HHHHhcCCCCEEEEecCCCCCC
Confidence 9631 11 1 11 1223345788899988 66543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.46 Score=45.11 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=68.1
Q ss_pred CCCceEEEEec-cc--chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-------
Q psy12825 175 SPDQKITVVGA-GQ--VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~--vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e------- 241 (488)
++.+++.|+|| |. +|..++..|+..|. +|++.|+++...+. ..++..... .....+. ..| .+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~~~~-~~~~~~~-~~D~~~~~~v~~~~~ 79 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKS-VHELAGTLD-RNDSIIL-PCDVTNDAEIETCFA 79 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHH-HHHHHHTSS-SCCCEEE-ECCCSSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHH-HHHHHHhcC-CCCceEE-eCCCCCHHHHHHHHH
Confidence 45678999998 66 99999999999987 89999998654443 333433211 0012222 223 21
Q ss_pred ----ccCCCcEEEEecccccC-----C--Ccch---HhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSL-----V--GETR---LQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k-----~--G~~r---~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|..++.... + ..+. ...+..|+.-...+.+.+..+ .+.+.||+++-
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 80 SIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 12367999999886531 1 1111 233455555444555555544 34567777764
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.047 Score=55.40 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhhh-C---CCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 154 MARDAVSTVDRLLSQV-A---PSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 154 la~eivlid~~~~~e~-~---~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
||+..+.+.-|+++=. . +....+..||.|||+|.+|+.++..|+..|+ .+|.|+|.+.
T Consensus 7 ~~~~~~~lnl~lm~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGV-g~ItlvD~D~ 68 (340)
T 3rui_A 7 IADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT 68 (340)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCE
Confidence 5555555554433321 1 1123356799999999999999999999997 5899999743
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.21 Score=46.63 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=67.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-------ccC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA-------MSE 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e-------al~ 244 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.. .++... +|++ .+.
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPG-------IEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTT-------CEEEECCTTCHHHHHHHHTTCC
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-------CCEEEEeCCCHHHHHHHHHHcC
Confidence 34578999999 9999999999999886 899999998776644333311 122211 1221 233
Q ss_pred CCcEEEEecccccCCC---cc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 245 GSRIVIITAGVRSLVG---ET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 245 dADiVIitag~~~k~G---~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
..|+||.+++...... .+ ....+..|+.- .+.+.+.+.+....+.+|+++-.
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 137 (244)
T 3d3w_A 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ 137 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred CCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence 5899999988643211 11 22344555543 34444444443324567777643
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.26 Score=48.20 Aligned_cols=114 Identities=15% Similarity=0.238 Sum_probs=69.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c----c---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----M--- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----a--- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... ....++. ...|. + .
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAG--VPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEecCCCCHHHHHHHHHH
Confidence 34567888898 9999999999999987 89999999988876666665421 0000222 12232 1 1
Q ss_pred ----cCCCcEEEEecccccCCC-----cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 ----SEGSRIVIITAGVRSLVG-----ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~G-----~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+...|++|..+|...... .+ ....+..|+. +.+.+.+.+.+.. +.||+++
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~is 165 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVS 165 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEC
T ss_pred HHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEc
Confidence 237899999998643211 11 1223444443 3444555554432 5677765
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.025 Score=56.94 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=47.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-cc--CCCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MS--EGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al--~dADiVI 250 (488)
++++||+|||+|.+|...+..+...+- .+| .++|+++++++..+.... . . ..+|++ .+ .++|+|+
T Consensus 3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~-~~lvav~d~~~~~~~~~~~~~g-~-------~--~~~~~~~~l~~~~~D~V~ 71 (354)
T 3db2_A 3 YNPVGVAAIGLGRWAYVMADAYTKSEK-LKLVTCYSRTEDKREKFGKRYN-C-------A--GDATMEALLAREDVEMVI 71 (354)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSS-EEEEEEECSSHHHHHHHHHHHT-C-------C--CCSSHHHHHHCSSCCEEE
T ss_pred CCcceEEEEccCHHHHHHHHHHHhCCC-cEEEEEECCCHHHHHHHHHHcC-C-------C--CcCCHHHHhcCCCCCEEE
Confidence 356799999999999988887765432 254 488999988776544331 1 1 145774 35 6799999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 72 i~t 74 (354)
T 3db2_A 72 ITV 74 (354)
T ss_dssp ECS
T ss_pred EeC
Confidence 985
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.12 Score=50.09 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=66.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-----c-cccCCCcEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-----I-AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-----~-eal~dADiVI 250 (488)
|||.|+|| |.+|++++..|+..|. +|+.+|++.+...... + ....+. ..| . +++++ |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~----~-----~~~~~~-~~Dl~d~~~~~~~~~-d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRREFV----N-----PSAELH-VRDLKDYSWGAGIKG-DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCGGGS----C-----TTSEEE-CCCTTSTTTTTTCCC-SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCchhhc----C-----CCceEE-ECccccHHHHhhcCC-CEEE
Confidence 58999999 9999999999999887 8999998654322110 0 111111 122 1 34556 9999
Q ss_pred EecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+++.+... .......+..|+.-...+.+.+.+..... +|++|
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-iv~~S 112 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT-VVFAS 112 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEeC
Confidence 998754221 12344556778888888888887765443 44444
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.15 Score=48.49 Aligned_cols=112 Identities=16% Similarity=0.266 Sum_probs=69.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++... ... ...| .+
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~-~~~D~~~~~~~~~~~~~~ 77 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGDA------ALA-VAADISKEADVDAAVEAA 77 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTT------EEE-EECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCCc------eEE-EEecCCCHHHHHHHHHHH
Confidence 35578999998 8999999999999986 8999999998887666555321 111 1122 11
Q ss_pred --ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccC---CCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGS---PDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~---p~a~vIv~TN 295 (488)
.+...|++|.++|....++ .+. ...+..|+. +.+.+.+.+.+.. ..+.||+++-
T Consensus 78 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS 147 (261)
T 3n74_A 78 LSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAS 147 (261)
T ss_dssp HHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCc
Confidence 1236899999998654221 121 223344433 4555556655542 2456777664
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.18 Score=50.50 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHH-HhhhCC-------CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHH
Q psy12825 152 QTMARDAVSTVDRL-LSQVAP-------SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDL 222 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~-------~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL 222 (488)
-.+++.+...++.. .++... ......++|+|||.|.||..++..+...|. +|+.+|+ +.+... ..++
T Consensus 113 L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~--~~~~ 188 (320)
T 1gdh_A 113 LGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDM--DIDYFDTHRASSSD--EASY 188 (320)
T ss_dssp HHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSCCCHHH--HHHH
T ss_pred HHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcChhh--hhhc
Confidence 45777777766443 222211 034567899999999999999998876565 8999999 776421 1111
Q ss_pred hhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 223 QHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 223 ~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
. +....++ +.+++||+|+++.
T Consensus 189 g----------~~~~~~l~ell~~aDvVil~~ 210 (320)
T 1gdh_A 189 Q----------ATFHDSLDSLLSVSQFFSLNA 210 (320)
T ss_dssp T----------CEECSSHHHHHHHCSEEEECC
T ss_pred C----------cEEcCCHHHHHhhCCEEEEec
Confidence 1 1123355 4688999999986
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.081 Score=53.82 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=51.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEEE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIES 236 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~~ 236 (488)
+..||.|||+|.+|+.++..|+..|+ .+|.|+|.+. .+++..+..+.... +..++..
T Consensus 117 ~~~~VlvvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~v~~ 192 (353)
T 3h5n_A 117 KNAKVVILGCGGIGNHVSVILATSGI-GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN---SEISVSE 192 (353)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC---TTSEEEE
T ss_pred hCCeEEEECCCHHHHHHHHHHHhCCC-CeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC---CCCeEEE
Confidence 35699999999999999999999986 5899999753 24555555555542 2334433
Q ss_pred cC-------CccccCCCcEEEEec
Q psy12825 237 GS-------DIAMSEGSRIVIITA 253 (488)
Q Consensus 237 tt-------d~eal~dADiVIita 253 (488)
.. +.++++++|+||.+.
T Consensus 193 ~~~~i~~~~~~~~~~~~DlVvd~~ 216 (353)
T 3h5n_A 193 IALNINDYTDLHKVPEADIWVVSA 216 (353)
T ss_dssp EECCCCSGGGGGGSCCCSEEEECC
T ss_pred eecccCchhhhhHhccCCEEEEec
Confidence 21 122388999999875
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.2 Score=47.01 Aligned_cols=112 Identities=15% Similarity=0.204 Sum_probs=67.0
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----cc----
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MS---- 243 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al---- 243 (488)
.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... ..++. ...| ++ .+
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY----ADKVLRVRADVADEGDVNAAIAATM 75 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT----GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 357899998 9999999999999986 89999999887776555552110 11221 1223 21 12
Q ss_pred ---CCCcEEEEecccccCCC------cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 ---EGSRIVIITAGVRSLVG------ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ---~dADiVIitag~~~k~G------~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.|+||.++|...... .+ ....+..|+. +.+.+.+.+.+.. ...+|+++-
T Consensus 76 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS 142 (250)
T 2cfc_A 76 EQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS 142 (250)
T ss_dssp HHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence 37899999998643211 11 1223444443 3345555555443 355666653
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.037 Score=56.75 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-cccCCCcEEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-AMSEGSRIVI 250 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-eal~dADiVI 250 (488)
..+..+|+|+|+|.+|..++..+...|. +|+.+|+++++++.....+.. ...+... .+. +.++++|+||
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~g~------~~~~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEFCG------RIHTRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTT------SSEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhcCC------eeEeccCCHHHHHHHHcCCCEEE
Confidence 3567899999999999999998887776 899999999877643222211 1111111 123 4577999999
Q ss_pred Eeccccc
Q psy12825 251 ITAGVRS 257 (488)
Q Consensus 251 itag~~~ 257 (488)
.+++.+.
T Consensus 237 ~~~~~p~ 243 (377)
T 2vhw_A 237 GAVLVPG 243 (377)
T ss_dssp ECCCCTT
T ss_pred ECCCcCC
Confidence 9987654
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.17 Score=51.38 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC-------CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS-------IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~-------~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
-.+++.+...+... .++.... .....++|+|||.|.||..+|..+..-|. +|..||++....+..
T Consensus 140 L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~----- 212 (345)
T 4g2n_A 140 LNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGL--AIHYHNRTRLSHALE----- 212 (345)
T ss_dssp HHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH-----
T ss_pred HHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCC--EEEEECCCCcchhhh-----
Confidence 46778887777543 2222110 34567899999999999999998875565 899999975333211
Q ss_pred hcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 224 HGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 224 ~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.. +....++ +.+++||+|+++.... .+...++ | . +.+....|.+++|+++.
T Consensus 213 ~g--------~~~~~~l~ell~~sDvV~l~~Plt----~~T~~li--~----~---~~l~~mk~gailIN~aR 264 (345)
T 4g2n_A 213 EG--------AIYHDTLDSLLGASDIFLIAAPGR----PELKGFL--D----H---DRIAKIPEGAVVINISR 264 (345)
T ss_dssp TT--------CEECSSHHHHHHTCSEEEECSCCC----GGGTTCB--C----H---HHHHHSCTTEEEEECSC
T ss_pred cC--------CeEeCCHHHHHhhCCEEEEecCCC----HHHHHHh--C----H---HHHhhCCCCcEEEECCC
Confidence 01 1223455 4688999999986321 0111111 1 1 22344467899999974
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.024 Score=56.87 Aligned_cols=90 Identities=17% Similarity=0.242 Sum_probs=61.2
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC--hhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN--EDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~--~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
|||.|+|| |.+|..++..|+..+. .+|+.+|++ ++.+. +.++++|+||.+++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~-~~v~~~d~~~d~~~l~------------------------~~~~~~d~Vih~a~ 55 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTD-HHIFEVHRQTKEEELE------------------------SALLKADFIVHLAG 55 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-CEEEECCTTCCHHHHH------------------------HHHHHCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CEEEEECCCCCHHHHH------------------------HHhccCCEEEECCc
Confidence 68999998 9999999999998874 278888884 11111 12346888998886
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.... ....+.+..|+...+.+++.+++......+|.+|
T Consensus 56 ~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S 93 (369)
T 3st7_A 56 VNRP--EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS 93 (369)
T ss_dssp SBCT--TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 5432 1223345567777788888888776554455554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.16 Score=51.92 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHHHH-hhhC------CCCCCCCceEEEEecccchHHHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHh
Q psy12825 152 QTMARDAVSTVDRLL-SQVA------PSIESPDQKITVVGAGQVGMACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~------~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~ 223 (488)
-.+++.+...+.... ++.. .......++|+|||.|.||..++..+..-|. + |+.+|++....+. ..++
T Consensus 132 L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~--~~V~~~d~~~~~~~~-~~~~- 207 (364)
T 2j6i_A 132 LVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP--KELLYYDYQALPKDA-EEKV- 207 (364)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC--SEEEEECSSCCCHHH-HHHT-
T ss_pred HHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCC--cEEEEECCCccchhH-HHhc-
Confidence 467777777664432 1110 1135577899999999999999998865554 6 9999987644331 1111
Q ss_pred hcCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 224 HGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 224 ~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+....++ +.+++||+|+++..... .++ .++ | ...+....|++++|+++.
T Consensus 208 ---------g~~~~~~l~ell~~aDvV~l~~P~t~---~t~-~li--~-------~~~l~~mk~ga~lIn~ar 258 (364)
T 2j6i_A 208 ---------GARRVENIEELVAQADIVTVNAPLHA---GTK-GLI--N-------KELLSKFKKGAWLVNTAR 258 (364)
T ss_dssp ---------TEEECSSHHHHHHTCSEEEECCCCST---TTT-TCB--C-------HHHHTTSCTTEEEEECSC
T ss_pred ---------CcEecCCHHHHHhcCCEEEECCCCCh---HHH-HHh--C-------HHHHhhCCCCCEEEECCC
Confidence 12223355 45789999999863211 011 111 1 122344567898888874
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.18 Score=50.72 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=68.9
Q ss_pred CceEEEEec-ccchHHHHHHHH-HcCCCCeEEEEeCChhH---------HHHHHHHHhhcCCC--CCC---CcEEEcCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSIL-TQGIYSNFCLIDSNEDR---------CKGEMLDLQHGAPF--LRS---PKIESGSDI 240 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La-~~~l~~el~L~Di~~e~---------l~g~~~dL~~~~~~--~~~---~~v~~ttd~ 240 (488)
.|+|.|+|| |.+|.+++..|+ ..+. +|+++|++... .+.....+.+.... ... ..+. ..|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl 78 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE-VGDV 78 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE-ESCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEE-ECCC
Confidence 368999998 999999999999 8886 89999986433 23222222222110 001 2222 2332
Q ss_pred -------cccC--C-CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -------AMSE--G-SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -------eal~--d-ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.++ + +|+||.+++..... .....+++..|+.-...+.+.+.+..... +|++|
T Consensus 79 ~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-iv~~S 143 (397)
T 1gy8_A 79 RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDK-IIFSS 143 (397)
T ss_dssp TCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred CCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCE-EEEEC
Confidence 2344 5 99999998754211 01234566778888888888877764443 44444
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.12 Score=51.32 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHH-hhhCC----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRLL-SQVAP----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...++... ++... ......++|+|||.|.||..++..+...|. +|+.+|++.+. + ...+. .
T Consensus 112 L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~-~-~~~~~--g- 184 (307)
T 1wwk_A 112 FSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGM--NILLYDPYPNE-E-RAKEV--N- 184 (307)
T ss_dssp HHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCH-H-HHHHT--T-
T ss_pred HHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHHHHHCCC--EEEEECCCCCh-h-hHhhc--C-
Confidence 467777777765432 22211 034567899999999999999998877675 89999998764 2 11111 0
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+.. .++ +.+++||+|+++.
T Consensus 185 -------~~~-~~l~ell~~aDvV~l~~ 204 (307)
T 1wwk_A 185 -------GKF-VDLETLLKESDVVTIHV 204 (307)
T ss_dssp -------CEE-CCHHHHHHHCSEEEECC
T ss_pred -------ccc-cCHHHHHhhCCEEEEec
Confidence 112 255 4588999999986
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.036 Score=55.52 Aligned_cols=69 Identities=9% Similarity=0.076 Sum_probs=46.9
Q ss_pred CCCceEEEEecccchHH-HHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c--CCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S--EGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l--~dADiV 249 (488)
.+++||+|||+|.+|.. .+..+...+-. +| .++|+++++++..+..+. ..+ ..+|+++ | .+.|+|
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g-------~~~--~y~d~~ell~~~~iDaV 90 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFS-------VPH--AFGSYEEMLASDVIDAV 90 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHT-------CSE--EESSHHHHHHCSSCSEE
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcC-------CCe--eeCCHHHHhcCCCCCEE
Confidence 35689999999999974 45666554322 44 488999998876655442 112 3468754 3 568999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
+++.
T Consensus 91 ~I~t 94 (350)
T 4had_A 91 YIPL 94 (350)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9985
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=49.26 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=70.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
.+.+++.|+|| |.+|..++..|+..|. +|++.|++.+.++....++... ..+... +|.+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~ 97 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGDD------ALCVPTDVTDPDSVRALFTATV 97 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTSC------CEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC------eEEEEecCCCHHHHHHHHHHHH
Confidence 34556777798 9999999999999987 8999999998887766665321 111111 1221
Q ss_pred -ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccC-CCcEEEEEeC
Q psy12825 242 -MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGS-PDCILLIISN 295 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~-p~a~vIv~TN 295 (488)
.+...|++|..+|.....+ .+. .+.+.-|+. +.+.+.+.+.+.. +.+.||+++-
T Consensus 98 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS 164 (272)
T 4dyv_A 98 EKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGS 164 (272)
T ss_dssp HHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECc
Confidence 1237999999998743211 121 233445543 4566666666554 2567777764
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.2 Score=47.89 Aligned_cols=111 Identities=15% Similarity=0.242 Sum_probs=69.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----ccC--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MSE-- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al~-- 244 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++.... .+ ...| .+ .++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~------~~-~~~D~~~~~~v~~~~~~~ 75 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAA------RY-VHLDVTQPAQWKAAVDTA 75 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGE------EE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcCc------eE-EEecCCCHHHHHHHHHHH
Confidence 45678999998 9999999999999987 89999999887766555553211 11 1122 21 232
Q ss_pred -----CCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 245 -----GSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 245 -----dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.|++|..+|..... ..+ -...+..|+. +.+.+.+.+.+.. .+.+|+++-
T Consensus 76 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 140 (260)
T 1nff_A 76 VTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS 140 (260)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence 799999999865321 112 1233445544 3355566665543 355666653
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.18 Score=46.92 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=65.7
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------c
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA-----------M 242 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e-----------a 242 (488)
.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++.. ..+... +|.+ .
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~~~~~~ 75 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEG-------ALPLPGDVREEGDWARAVAAMEEA 75 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTT-------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhh-------ceEEEecCCCHHHHHHHHHHHHHH
Confidence 356899998 9999999999999887 899999998777654444321 111111 1221 1
Q ss_pred cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|+||.++|...... .+ ..+.+..|+. ..+.+.+.+.+. ..+.+|+++-
T Consensus 76 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS 137 (234)
T 2ehd_A 76 FGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGS 137 (234)
T ss_dssp HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECC
Confidence 237899999998643211 11 2233444543 334555555543 3455666654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.11 Score=51.00 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=65.1
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH--HHHHHhhcCCCCCCCcEEEc--CC---c-cccCCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG--EMLDLQHGAPFLRSPKIESG--SD---I-AMSEGSR 247 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g--~~~dL~~~~~~~~~~~v~~t--td---~-eal~dAD 247 (488)
+++|.|+|| |.+|++++..|+..|. +|+.++++.+.... ...++... ....+... +| . ++++++|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~D 82 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL----GDLKIFRADLTDELSFEAPIAGCD 82 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG----SCEEEEECCTTTSSSSHHHHTTCS
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC----CcEEEEecCCCChHHHHHHHcCCC
Confidence 478999998 9999999999999886 88877776543211 11122211 01111111 12 2 3578999
Q ss_pred EEEEecccccCCCcc-hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 248 IVIITAGVRSLVGET-RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k~G~~-r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+||-+++........ ..+++..|+.-...+.+.+.+...-..+|++|
T Consensus 83 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~S 130 (338)
T 2rh8_A 83 FVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS 130 (338)
T ss_dssp EEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEe
Confidence 999998643111111 12366778888788888777653123455554
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.14 Score=49.46 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=70.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++++++++.++....++.... .++. ...| .+
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~Dl~d~~~v~~~~~ 113 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG-----YESSGYAGDVSKKEEISEVIN 113 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC-----CceeEEECCCCCHHHHHHHHH
Confidence 345678999998 9999999999998876 89999998887776666665421 1221 1223 21
Q ss_pred ----ccCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 ----MSEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+.+.|+||.++|..... ..+ ..+.+..|+.- .+.+.+.+.+.. .+.+|+++-.
T Consensus 114 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~ 181 (285)
T 2c07_A 114 KILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSI 181 (285)
T ss_dssp HHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred HHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence 124789999999865321 112 22334445433 444444444433 3556666643
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.13 Score=48.90 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=63.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
.+.+++.|+|+ |.+|.+++..|+..|. +|+++|++++.++....++... ..+... +|.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~Dv~~~~~v~~~~~~~~ 76 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELGAA------VRFRNADVTNEADATAALAFAK 76 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCc------eEEEEccCCCHHHHHHHHHHHH
Confidence 34567889998 9999999999999987 8999999887766554444211 111111 1221
Q ss_pred -ccCCCcEEEEecccccCCC-------cc---hHhhHhhhHH----HHHHHHHHHhcc-----CCCcEEEEEeCC
Q psy12825 242 -MSEGSRIVIITAGVRSLVG-------ET---RLQLVDRNVK----IFKDLIPKIAKG-----SPDCILLIISNP 296 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G-------~~---r~dll~~N~~----ii~ei~~~I~~~-----~p~a~vIv~TNP 296 (488)
.+...|++|..+|...... .+ -...+..|+. +.+.+.+.+.+. ...+.||+++-.
T Consensus 77 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~ 151 (257)
T 3tpc_A 77 QEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASI 151 (257)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred HHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEech
Confidence 1237999999998653211 11 1223444543 445555555553 235667777643
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.074 Score=52.37 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=67.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC---c-cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---I-AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---~-eal~dADi 248 (488)
++++|.|+|| |.+|++++..|+..|. +|+.++++.+..... ..+.+.........+... +| . ++++++|+
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKV-KHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTG 80 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHH-HHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHH-HHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCE
Confidence 4578999997 9999999999999886 888888776533221 112111000000111111 12 2 35789999
Q ss_pred EEEecccccCCCcc-hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVGET-RLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G~~-r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++........ ..+++..|+.-...+.+.+.+...-..+|++|
T Consensus 81 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S 127 (337)
T 2c29_D 81 VFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS 127 (337)
T ss_dssp EEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred EEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence 99988643211122 23466778887788888777654223455554
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.017 Score=59.77 Aligned_cols=119 Identities=20% Similarity=0.364 Sum_probs=73.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh----hH---HHHHHHHHhhcCCCCCCCcEEEcCCc-cccC
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE----DR---CKGEMLDLQHGAPFLRSPKIESGSDI-AMSE 244 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~----e~---l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~ 244 (488)
...+..||+|+|||.+|.+++..+...|. .+|+++|.+- ++ +......+.+... ... ...++ ++++
T Consensus 184 ~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~---~~~--~~~~L~eav~ 257 (398)
T 2a9f_A 184 KSLDEVSIVVNGGGSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN---REF--KSGTLEDALE 257 (398)
T ss_dssp CCTTSCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHS---CTT--CCCSCSHHHH
T ss_pred CCCCccEEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccC---ccc--chhhHHHHhc
Confidence 45667899999999999999999888775 6899999862 11 2222222221100 000 12344 6799
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc-hhHHHHHHHhcCCCCCcEEeec
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV-DVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv-di~t~~~~k~sg~p~~rViG~g 319 (488)
+||++|=+.+ ||. +-+++.+.|. ++.+|+=.+||. .+..+-++++ | ..||++|
T Consensus 258 ~ADV~IG~Sa----pgl-----------~T~EmVk~Ma---~~pIIfalsNPt~E~~pe~a~~~-g---~~i~atG 311 (398)
T 2a9f_A 258 GADIFIGVSA----PGV-----------LKAEWISKMA---ARPVIFAMANPIPEIYPDEALEA-G---AYIVGTG 311 (398)
T ss_dssp TTCSEEECCS----TTC-----------CCHHHHHTSC---SSCEEEECCSSSCSSCHHHHHTT-T---CSEEEES
T ss_pred cCCEEEecCC----CCC-----------CCHHHHHhhC---CCCEEEECCCCCccCCHHHHHHh-C---CeEEEeC
Confidence 9998776532 332 1133344443 789999999996 4555666554 2 3588887
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.08 Score=54.17 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-ccc-CCCcEEEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMS-EGSRIVII 251 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal-~dADiVIi 251 (488)
..+.++|+|+|+|.||..++..|...|. +|+++|++.++++..+.++. .+ .. +. +.+ .+||+++.
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga--kVvv~D~~~~~l~~~a~~~g--------a~--~v-~~~~ll~~~~DIvip 236 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGA--KLVVTDVNKAAVSAAVAEEG--------AD--AV-APNAIYGVTCDIFAP 236 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC--------CE--EC-CGGGTTTCCCSEEEE
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHcC--------CE--EE-ChHHHhccCCcEeec
Confidence 4677899999999999999999988887 79999999987765544431 11 11 22 223 38999998
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
++
T Consensus 237 ~a 238 (364)
T 1leh_A 237 CA 238 (364)
T ss_dssp CS
T ss_pred cc
Confidence 75
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=94.65 E-value=0.19 Score=47.72 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=69.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA---------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e---------- 241 (488)
.+.+++.|+|+ |.+|.+++..|+..|. +|++.|++++.++....++.... ..... +|.+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~------~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG------KGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE------EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc------eEEEEeCCCHHHHHHHHHHHH
Confidence 34567888898 9999999999999987 89999999988877666664321 11111 1221
Q ss_pred -ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 -MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 -al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+.. .+.||+++
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~is 141 (248)
T 3op4_A 79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVG 141 (248)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence 2337899999998653211 111 223444543 4455555554443 35566665
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.3 Score=46.82 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=68.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e-------- 241 (488)
++.+++.|+|| |.+|..++..|+..|. +|+++|++++.++....++. .++. ...| .+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~ 73 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE--------AEAIAVVADVSDPKAVEAVFAE 73 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC--------SSEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc--------CceEEEEcCCCCHHHHHHHHHH
Confidence 45678999998 9999999999999987 89999999887765443332 1111 1223 21
Q ss_pred ---ccCCCcEEEEecccccCC---Ccch---HhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCc
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPV 297 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G~~r---~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPv 297 (488)
.+...|++|..+|..... ..+. ...+..|+.-...+.+.+..+- ..+.||+++-..
T Consensus 74 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 139 (263)
T 2a4k_A 74 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA 139 (263)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 123569999999865321 1121 2345566554444444433321 145677776543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.23 Score=46.70 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=68.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---ccc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IAM-------- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~ea-------- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... ..+ ...| .++
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~-~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGAAV-----AAR-IVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGE-----EEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc-----eeE-EEEecCCHHHHHHHHHHH
Confidence 45578999998 9999999999999986 89999999887766555552110 011 1122 211
Q ss_pred --cCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 --SEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 --l~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+.|+||.++|..... ..+ ..+.+..|+.- .+.+.+.+.+.. .+.+|+++-
T Consensus 81 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS 144 (254)
T 2wsb_A 81 EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS 144 (254)
T ss_dssp HHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence 25789999999864321 111 12334455443 444555554443 355666654
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.16 Score=51.28 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHH-HhhhCC----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAP----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...+... .++... ......++|+|||.|.||..+|..+..-|. +|+.||++.+.. ...+. .
T Consensus 135 L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~--~~~~~--g- 207 (335)
T 2g76_A 135 MCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGM--KTIGYDPIISPE--VSASF--G- 207 (335)
T ss_dssp HHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSSCHH--HHHHT--T-
T ss_pred HHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHHHHHHCCC--EEEEECCCcchh--hhhhc--C-
Confidence 35777777766443 222211 134567899999999999999998875554 899999976532 11111 0
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.. . .++ +.+++||+|+++..... .++ .++ | .+.+....|.+++|+++-
T Consensus 208 -----~~--~-~~l~ell~~aDvV~l~~P~t~---~t~-~li--~-------~~~l~~mk~gailIN~ar 256 (335)
T 2g76_A 208 -----VQ--Q-LPLEEIWPLCDFITVHTPLLP---STT-GLL--N-------DNTFAQCKKGVRVVNCAR 256 (335)
T ss_dssp -----CE--E-CCHHHHGGGCSEEEECCCCCT---TTT-TSB--C-------HHHHTTSCTTEEEEECSC
T ss_pred -----ce--e-CCHHHHHhcCCEEEEecCCCH---HHH-Hhh--C-------HHHHhhCCCCcEEEECCC
Confidence 11 1 255 56889999999863211 011 111 1 123444567888888863
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.05 Score=53.69 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=68.4
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c----ccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I----AMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~----eal 243 (488)
...+.++|.|+|| |.+|..++..|+..|. +|+++|++...... +.+. . .++. ...| . +.+
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~--l---~~v~~~~~Dl~d~~~~~~~~ 84 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKRE----VLPP--V---AGLSVIEGSVTDAGLLERAF 84 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCGG----GSCS--C---TTEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccchh----hhhc--c---CCceEEEeeCCCHHHHHHHH
Confidence 4456789999999 9999999999998886 89999985432210 0010 0 1221 1223 2 246
Q ss_pred C--CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 244 E--GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 244 ~--dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ ++|+||.+++..........+ +..|+.-...+.+.+.+.... .+|++|
T Consensus 85 ~~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S 135 (330)
T 2pzm_A 85 DSFKPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ 135 (330)
T ss_dssp HHHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred hhcCCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence 6 899999998754322122223 567777777777777765433 455554
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.064 Score=52.01 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=65.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
+++||.|+|| |.+|++++..|+..|. +|+.+|++..........+.+.. ....+ ..-..++.++|+||.+++
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~--~~~~~Dl~~~d~vi~~a~ 78 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFL---EKPVL--ELEERDLSDVRLVYHLAS 78 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEE---CSCGG--GCCHHHHTTEEEEEECCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhc---cCCCe--eEEeCccccCCEEEECCc
Confidence 4689999999 9999999999999886 89999986541100000011100 00010 001135669999999987
Q ss_pred cccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 255 VRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 255 ~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..... .....+.+. |+.-.+.+.+.+.+..... +|++|
T Consensus 79 ~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~-~v~~S 118 (321)
T 3vps_A 79 HKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPK-VVVGS 118 (321)
T ss_dssp CCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred cCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCe-EEEec
Confidence 54210 111223345 8888888888888776444 44444
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.17 Score=49.57 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|++.|++++.++....++.... ..++. ...|. +
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG----AGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS----SSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC----CCcEEEEEEeCCCHHHHHHHHHH
Confidence 45567888898 9999999999999987 89999999988887777775431 11222 22232 1
Q ss_pred ---ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 ---MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+...|++|..+|..... ..+. ...+..|+. +.+...+.+.+... +.||+++
T Consensus 113 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~is 177 (293)
T 3rih_A 113 VVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTS 177 (293)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEEC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 234679999999864321 1222 223445544 34444555555443 4566665
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.13 Score=49.06 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=69.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH-HHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR-CKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~-l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
+.++|.|+|| |.+|..++..|+..|. +|++.|++++. ++....++.... ..++. ...|. +
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~ 76 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH----GVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH----TSCEEEECCCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc----CCcEEEEECCCCCHHHHHHHHHH
Confidence 4567888898 9999999999999987 89999998876 666555554320 01111 12232 1
Q ss_pred ---ccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+ -...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 77 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 142 (260)
T 1x1t_A 77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS 142 (260)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence 1237899999998653211 11 1233445544 4555555555443 356777754
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.05 Score=54.87 Aligned_cols=73 Identities=8% Similarity=0.042 Sum_probs=47.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiVIi 251 (488)
++++||+|||+|.+|..++..|...+-..-+.++|.++++++..+.... .. ......+|+++ ++ ++|+|++
T Consensus 4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~----~~--~~~~~~~~~~~ll~~~~~D~V~i 77 (362)
T 1ydw_A 4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANN----YP--ESTKIHGSYESLLEDPEIDALYV 77 (362)
T ss_dssp --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTT----CC--TTCEEESSHHHHHHCTTCCEEEE
T ss_pred CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhC----CC--CCCeeeCCHHHHhcCCCCCEEEE
Confidence 3568999999999999888877765322234689999887765443321 11 12233467754 43 6999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 78 ~t 79 (362)
T 1ydw_A 78 PL 79 (362)
T ss_dssp CC
T ss_pred cC
Confidence 85
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.033 Score=56.24 Aligned_cols=70 Identities=10% Similarity=0.115 Sum_probs=46.4
Q ss_pred CCCCCceEEEEecccchH-HHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCc
Q psy12825 173 IESPDQKITVVGAGQVGM-ACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~-~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dAD 247 (488)
..|+++||+|||+|.+|. .++..|...+-. +| .++|+++++++..+.... .. ..+|+++ ++ +.|
T Consensus 23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g--------~~--~~~~~~~ll~~~~~D 91 (350)
T 3rc1_A 23 ANANPIRVGVIGCADIAWRRALPALEAEPLT-EVTAIASRRWDRAKRFTERFG--------GE--PVEGYPALLERDDVD 91 (350)
T ss_dssp ---CCEEEEEESCCHHHHHTHHHHHHHCTTE-EEEEEEESSHHHHHHHHHHHC--------SE--EEESHHHHHTCTTCS
T ss_pred CCCCceEEEEEcCcHHHHHHHHHHHHhCCCe-EEEEEEcCCHHHHHHHHHHcC--------CC--CcCCHHHHhcCCCCC
Confidence 445678999999999998 677777765322 55 488999987775444331 11 2257743 44 699
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
+|+++.
T Consensus 92 ~V~i~t 97 (350)
T 3rc1_A 92 AVYVPL 97 (350)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999985
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.17 Score=49.13 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCC---cc--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSD---IA-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd---~e-------- 241 (488)
.+.+++.|+|| |.+|..++..|+..|. +|+++|++++.++....++.... .++.. ..| .+
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 78 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGG-----GEAAALAGDVGDEALHEALVEL 78 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTT-----CCEEECCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 45567888898 9999999999999987 89999999988887777665321 12221 222 21
Q ss_pred ---ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.....+ .+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 79 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS 145 (280)
T 3tox_A 79 AVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSS 145 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 1237899999998642211 121 223444443 3444555555433 456666653
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.028 Score=56.08 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=47.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiVI 250 (488)
++++||+|||+|.+|..++..|...+-. +|+ ++|+++++++..+.... .. ...+|+++ +. ++|+|+
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~-------~~--~~~~~~~~ll~~~~~D~V~ 72 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQA-EVRGIASRRLENAQKMAKELA-------IP--VAYGSYEELCKDETIDIIY 72 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHHHHHHTT-------CC--CCBSSHHHHHHCTTCSEEE
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHHHHHHcC-------CC--ceeCCHHHHhcCCCCCEEE
Confidence 4568999999999999988888765322 554 88999887765443321 01 12457743 44 899999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 73 i~t 75 (330)
T 3e9m_A 73 IPT 75 (330)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=94.57 E-value=0.14 Score=47.83 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=66.1
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEE-EeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----c-----
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCL-IDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----M----- 242 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L-~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----a----- 242 (488)
++|.|+|| |.+|..++..|+..|. +|++ ++++++.++....++.... .++. ...| .+ .
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~ 74 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG-----GQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT-----CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC-----CcEEEEeCCCCCHHHHHHHHHHHH
Confidence 57889998 9999999999999986 7887 5888877766655554321 1221 1223 21 1
Q ss_pred --cCCCcEEEEecccccCCC---cc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 243 --SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 243 --l~dADiVIitag~~~k~G---~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.|+||.+++...... .+ ....+..|+.- .+.+.+.+.+. ..+.+|+++-.
T Consensus 75 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~ 139 (244)
T 1edo_A 75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASV 139 (244)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred HHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCh
Confidence 237899999998654211 11 22334455443 34444444333 24567776643
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.11 Score=50.78 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=55.1
Q ss_pred CCCceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc----cccCCCcE
Q psy12825 175 SPDQKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI----AMSEGSRI 248 (488)
Q Consensus 175 ~~~~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~----eal~dADi 248 (488)
.+.+++.|+| +|.+|.+++..|+..|. +|+++|++.++++....++..... ..-+.. .+|. +.++++|+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~---~~~~~~D~~~~~~~~~~~~~~Dv 191 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETADDASRAEAVKGAHF 191 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECCSHHHHHHHTTTCSE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCC---cEEEEecCCCHHHHHHHHHhCCE
Confidence 4567899999 69999999999999986 699999998888777666653210 001111 1232 35788999
Q ss_pred EEEecccc
Q psy12825 249 VIITAGVR 256 (488)
Q Consensus 249 VIitag~~ 256 (488)
||.+++..
T Consensus 192 lVn~ag~g 199 (287)
T 1lu9_A 192 VFTAGAIG 199 (287)
T ss_dssp EEECCCTT
T ss_pred EEECCCcc
Confidence 99998643
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.074 Score=51.36 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=66.9
Q ss_pred eEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccC-----CCcEEE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSE-----GSRIVI 250 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~-----dADiVI 250 (488)
||.|+|| |.+|++++..|+..| . +|++++.+..... ...+... .....+.-.... +.++ ++|+||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~--~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~d~vi 73 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTK--FVNLVDL---NIADYMDKEDFLIQIMAGEEFGDVEAIF 73 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGG--GHHHHTS---CCSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCch--hhhcCcc---eeccccccHHHHHHHHhccccCCCcEEE
Confidence 6899999 999999999999887 4 8999998654321 1112211 001111101112 2344 499999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+++..........+.+..|+.-...+.+.+.+... .+|++|
T Consensus 74 ~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S 115 (310)
T 1eq2_A 74 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (310)
T ss_dssp ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred ECcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 998754332234556677888888888888877654 455554
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.17 Score=53.03 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=74.8
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCC-----------CCCcEEE-cC
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFL-----------RSPKIES-GS 238 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~-----------~~~~v~~-tt 238 (488)
...++++|.|+|| |.+|+.++..|+..+. ..+|++++++++.... ...+.+..... ...++.. ..
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 4456789999998 9999999999998732 2499999997654432 22332221100 0012221 22
Q ss_pred Cc-------------cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 239 DI-------------AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 239 d~-------------eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|. +.++++|+||.+++.... ....+.+..|+.-...+++...+.....+|.+-|
T Consensus 148 Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred ECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 32 235689999999875432 2233556778888888888888775555444444
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.1 Score=50.23 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----cc-----
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----MS----- 243 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----al----- 243 (488)
++++|.|+|| |.+|.+++..|+..|. +|++.|++.+.++....++.. ...+... +|.+ .+
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAYPD------RAEAISLDVTDGERIDVVAADVLA 75 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHCTT------TEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccC------CceEEEeeCCCHHHHHHHHHHHHH
Confidence 3567888898 9999999999999987 899999998877654433321 1111111 1221 12
Q ss_pred --CCCcEEEEecccccCC---Ccch---HhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 --EGSRIVIITAGVRSLV---GETR---LQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 --~dADiVIitag~~~k~---G~~r---~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+.|+||.++|..... ..+. ...+..|+.- .+.+.+.+.+.. .+.||+++-
T Consensus 76 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS 138 (281)
T 3m1a_A 76 RYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISS 138 (281)
T ss_dssp HHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence 3789999999864321 1222 2344555544 666666666544 345666653
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.093 Score=55.13 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=61.1
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|+|.|.+|..+|..+..-|. +|+.+|+++.+..... .+. .++ .++ +.++.||||+.
T Consensus 243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A~---~~G------~~v---v~LeElL~~ADIVv~ 308 (464)
T 3n58_A 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGA--RVKVTEVDPICALQAA---MDG------FEV---VTLDDAASTADIVVT 308 (464)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHH---HTT------CEE---CCHHHHGGGCSEEEE
T ss_pred CcccCCEEEEECcCHHHHHHHHHHHHCCC--EEEEEeCCcchhhHHH---hcC------cee---ccHHHHHhhCCEEEE
Confidence 45678899999999999999988876665 8999999886543211 111 111 244 56899999998
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.. + ++. .+.+....|.+++||++..
T Consensus 309 atgt~---~------------lI~--~e~l~~MK~GAILINvGRg 336 (464)
T 3n58_A 309 TTGNK---D------------VIT--IDHMRKMKDMCIVGNIGHF 336 (464)
T ss_dssp CCSSS---S------------SBC--HHHHHHSCTTEEEEECSSS
T ss_pred CCCCc---c------------ccC--HHHHhcCCCCeEEEEcCCC
Confidence 75321 1 110 1223334578989988754
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.16 Score=48.22 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=68.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----ccC-
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MSE- 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al~- 244 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|++++ +....++.... .++. ...| .+ .++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~--~~~~~~l~~~~-----~~~~~~~~D~~~~~~v~~~~~~ 72 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDP--APALAEIARHG-----VKAVHHPADLSDVAQIEALFAL 72 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCC--HHHHHHHHTTS-----CCEEEECCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCch--HHHHHHHHhcC-----CceEEEeCCCCCHHHHHHHHHH
Confidence 34578899998 9999999999999987 8999999765 33344443311 1222 2223 21 233
Q ss_pred ------CCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 245 ------GSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 245 ------dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.|++|..+|..... ..+ ....+..|+. ..+.+.+.+.+.. .+.||+++-
T Consensus 73 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS 138 (255)
T 2q2v_A 73 AEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS 138 (255)
T ss_dssp HHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence 799999999864321 111 2234555655 5566666666543 355777664
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.19 Score=48.41 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. .|++.|++++.++....++... ..+ ...| .+
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~-~~~Dv~d~~~v~~~~~~~ 95 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLGKD------VFV-FSANLSDRKSIKQLAEVA 95 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCSS------EEE-EECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc------eEE-EEeecCCHHHHHHHHHHH
Confidence 35567888898 9999999999999987 8999999998877655544211 111 1222 21
Q ss_pred --ccCCCcEEEEecccccCC---Ccc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 --MSEGSRIVIITAGVRSLV---GET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 --al~dADiVIitag~~~k~---G~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|++|..+|..... ..+ -...+..|+.- .+.+.+.+.+.. .+.||+++--
T Consensus 96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~ 161 (266)
T 3grp_A 96 EREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSI 161 (266)
T ss_dssp HHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence 124789999999865321 122 12334455443 555666665543 3556766543
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.33 Score=47.03 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------ 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------ 241 (488)
.++.+++.|+|| |.+|..++..|+..|. +|++.|+ +.+.++....++.... ..++. ...|. +
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~ 95 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS----SGTVLHHPADMTKPSEIADMM 95 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC----SSCEEEECCCTTCHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc----CCcEEEEeCCCCCHHHHHHHH
Confidence 445678899998 9999999999999987 8999999 6676766666665421 11222 22232 1
Q ss_pred -----ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 96 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS 163 (281)
T 3v2h_A 96 AMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS 163 (281)
T ss_dssp HHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence 1347899999998753221 122 223444543 4455555555543 355666653
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.032 Score=55.24 Aligned_cols=66 Identities=21% Similarity=0.136 Sum_probs=45.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEEEEe
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiVIit 252 (488)
+++||+|||+|.+|..++..|...+-..-+.++|+++++++. .. .. +...+|+++ ++ ++|+|+++
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~-------~~---~~--~~~~~~~~~~l~~~~~D~V~i~ 76 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLAL-------VP---PG--CVIESDWRSVVSAPEVEAVIIA 76 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTT-------CC---TT--CEEESSTHHHHTCTTCCEEEEE
T ss_pred CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHH-------HH---hh--CcccCCHHHHhhCCCCCEEEEe
Confidence 467999999999999888888775322234589999875542 11 11 234567754 54 89999999
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 77 t 77 (315)
T 3c1a_A 77 T 77 (315)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.021 Score=53.91 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----c-ccCCCcE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----A-MSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----e-al~dADi 248 (488)
..++|.|+|+|.+|..++..|...+. ++++|.++++++... .. ..+... +|. + .+.+||.
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~---v~vid~~~~~~~~~~---~~-------~~~i~gd~~~~~~l~~a~i~~ad~ 74 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV---FVLAEDENVRKKVLR---SG-------ANFVHGDPTRVSDLEKANVRGARA 74 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE---EEEESCGGGHHHHHH---TT-------CEEEESCTTCHHHHHHTTCTTCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe---EEEEECCHHHHHHHh---cC-------CeEEEcCCCCHHHHHhcCcchhcE
Confidence 34689999999999999988866653 899999988765432 11 122221 222 2 3889999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCc-EEEEEeCCch
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDC-ILLIISNPVD 298 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a-~vIv~TNPvd 298 (488)
||++.+. + ..|.. ++..+++..|+. ++..+.||.+
T Consensus 75 vi~~~~~---------d--~~n~~----~~~~a~~~~~~~~iia~~~~~~~ 110 (234)
T 2aef_A 75 VIVDLES---------D--SETIH----CILGIRKIDESVRIIAEAERYEN 110 (234)
T ss_dssp EEECCSC---------H--HHHHH----HHHHHHHHCSSSEEEEECSSGGG
T ss_pred EEEcCCC---------c--HHHHH----HHHHHHHHCCCCeEEEEECCHhH
Confidence 9998521 1 12322 344455567774 4445556765
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.0089 Score=62.90 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=48.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-E-cCCc----cccCCCcE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-S-GSDI----AMSEGSRI 248 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~-ttd~----eal~dADi 248 (488)
|++++|.|+|+|.+|..++..|+..+. +|+++|++.++++..+..+. ..... . .+|. +.++++|+
T Consensus 1 M~~k~VlViGaG~iG~~ia~~L~~~G~--~V~v~~R~~~~a~~la~~~~-------~~~~~~~Dv~d~~~l~~~l~~~Dv 71 (450)
T 1ff9_A 1 MATKSVLMLGSGFVTRPTLDVLTDSGI--KVTVACRTLESAKKLSAGVQ-------HSTPISLDVNDDAALDAEVAKHDL 71 (450)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHTTTC--EEEEEESSHHHHHHTTTTCT-------TEEEEECCTTCHHHHHHHHTTSSE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcC--EEEEEECCHHHHHHHHHhcC-------CceEEEeecCCHHHHHHHHcCCcE
Confidence 346789999999999999999997775 79999999876653221111 01111 1 1222 34789999
Q ss_pred EEEeccc
Q psy12825 249 VIITAGV 255 (488)
Q Consensus 249 VIitag~ 255 (488)
||.+++.
T Consensus 72 VIn~a~~ 78 (450)
T 1ff9_A 72 VISLIPY 78 (450)
T ss_dssp EEECCC-
T ss_pred EEECCcc
Confidence 9999853
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.25 Score=45.96 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=35.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
++|.|+|| |.+|..++..|+..|. +|++.|++++.++....++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~ 45 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCL 45 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH
Confidence 46889998 9999999999999986 7999999998877655444
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.39 Score=46.43 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=68.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.+++.|+|| |.+|.+++..|+..|. +|++.|++++.++....++... ... ...| .+
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~-~~~Dv~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIGSK------AFG-VRVDVSSAKDAESMVEKT 95 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCTT------EEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc------eEE-EEecCCCHHHHHHHHHHH
Confidence 45567888998 9999999999999987 8999999998777655554211 111 1122 11
Q ss_pred --ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|..... ..+. ...+.-|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 96 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS 160 (277)
T 4dqx_A 96 TAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINTTS 160 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECC
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECc
Confidence 123789999999864321 1122 223445544 344555555443 3456777753
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.1 Score=49.59 Aligned_cols=111 Identities=9% Similarity=0.024 Sum_probs=65.4
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------cccCCCcE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------AMSEGSRI 248 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------eal~dADi 248 (488)
++|.|+|+ |.+|..++..|+..|. +|++.|++++.++.... +.... ......-..+. +.+...|+
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~-l~~~~---~~~~~~d~~~v~~~~~~~~~~~g~iD~ 75 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEA-FAETY---PQLKPMSEQEPAELIEAVTSAYGQVDV 75 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHH-HHHHC---TTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-HHhcC---CcEEEECHHHHHHHHHHHHHHhCCCCE
Confidence 46888898 9999999999999987 89999998877765433 54321 01111101111 12347899
Q ss_pred EEEecccc-cC-C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 249 VIITAGVR-SL-V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 249 VIitag~~-~k-~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+|..+|.. .. + ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 76 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 132 (254)
T 1zmt_A 76 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITS 132 (254)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred EEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence 99999865 21 1 1111 223444543 4455555555443 355777654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.4 Score=46.77 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-----
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A----- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e----- 241 (488)
.++.+++.|+|+ |.+|.+++..|+..|. +|++.|++. +.++.....+.... .++. ...|. +
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~ 118 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG-----RKAVLLPGDLSDESFARSL 118 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT-----CCEEECCCCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC-----CcEEEEEecCCCHHHHHHH
Confidence 345678999998 9999999999999987 899999863 34444444443321 1222 12232 1
Q ss_pred ------ccCCCcEEEEecccccCCC----cc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 ------MSEGSRIVIITAGVRSLVG----ET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 ------al~dADiVIitag~~~k~G----~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|..+|.....+ .+ -...+.-|+.-...+.+.+... ...+.||+++-
T Consensus 119 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 119 VHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 1347899999998643211 12 2334566665555556655544 23466777753
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=94.42 E-value=0.37 Score=46.62 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=38.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQ 223 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~ 223 (488)
++.+++.|+|| |.+|..++..|+..|. +|+++|+++ +.++....++.
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~ 69 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELN 69 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHH
Confidence 45577888898 9999999999999986 899999988 77776666664
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.037 Score=54.91 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=45.5
Q ss_pred CceEEEEecccchH-HHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGM-ACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~-~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIita 253 (488)
++||+|||+|.+|. .++..|...+- .+|+++|+++++++..+..+. . .. ..+++.+.+ .++|+|+++.
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~-~~l~v~d~~~~~~~~~a~~~g-~------~~-~~~~~~~~l~~~~D~V~i~t 71 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYR-V------SA-TCTDYRDVLQYGVDAVMIHA 71 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTT-C------CC-CCSSTTGGGGGCCSEEEECS
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHcC-C------Cc-cccCHHHHhhcCCCEEEEEC
Confidence 46999999999998 47777755321 267799999988765443321 0 11 122334566 7899999996
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.02 Score=57.61 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcC----CC--Ce-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQG----IY--SN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S- 243 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~----l~--~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l- 243 (488)
+.|++.+|+|||+|.+|...+..+...+ +. .+ +.++|+++++++..+.++.- . ...+|+++ |
T Consensus 2 ~~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~-------~--~~~~d~~~ll~ 72 (390)
T 4h3v_A 2 NAMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW-------S--TTETDWRTLLE 72 (390)
T ss_dssp --CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC-------S--EEESCHHHHTT
T ss_pred CCCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC-------C--cccCCHHHHhc
Confidence 4567789999999999987766665431 11 13 45889999988766555421 1 23468754 4
Q ss_pred -CCCcEEEEec
Q psy12825 244 -EGSRIVIITA 253 (488)
Q Consensus 244 -~dADiVIita 253 (488)
.+.|+|+++.
T Consensus 73 ~~~iDaV~I~t 83 (390)
T 4h3v_A 73 RDDVQLVDVCT 83 (390)
T ss_dssp CTTCSEEEECS
T ss_pred CCCCCEEEEeC
Confidence 4689999985
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.03 Score=53.20 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=41.3
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-CCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S-EGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l-~dADiVIita 253 (488)
+||+|||+|.||..++..|...++ +| .++|.++ +.+. ...|+++ + .++|+||++.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~--~lv~v~d~~~-~~~~------------------~~~~~~~l~~~~~DvVv~~~ 58 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGF--EIAAILDVRG-EHEK------------------MVRGIDEFLQREMDVAVEAA 58 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEEECSSC-CCTT------------------EESSHHHHTTSCCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC--EEEEEEecCc-chhh------------------hcCCHHHHhcCCCCEEEECC
Confidence 589999999999999998886565 76 6899874 2210 2356643 4 6999999996
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.041 Score=56.12 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-cccCCCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-AMSEGSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-eal~dADiVIi 251 (488)
.+.++|+|+|+|.+|..++..+...|. +|+++|+++++++.....+.. ......+ .+. +.++++|+||.
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~~g~------~~~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDVFGG------RVITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTT------SEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhcCc------eEEEecCCHHHHHHHHhCCCEEEE
Confidence 567899999999999999998888786 899999998877643222210 1011111 122 45789999999
Q ss_pred ecccc
Q psy12825 252 TAGVR 256 (488)
Q Consensus 252 tag~~ 256 (488)
+++.+
T Consensus 236 ~~g~~ 240 (369)
T 2eez_A 236 AVLVP 240 (369)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 98654
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.039 Score=54.89 Aligned_cols=112 Identities=14% Similarity=0.008 Sum_probs=68.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----cccCC--
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----AMSEG-- 245 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----eal~d-- 245 (488)
+.++|.|+|| |.+|++++..|+..|. +|+++|++.+........+.. .....+. ..| . +.+++
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~-~~Dl~d~~~~~~~~~~~~ 80 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV----ADGMQSE-IGDIRDQNKLLESIREFQ 80 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT----TTTSEEE-ECCTTCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc----CCceEEE-EccccCHHHHHHHHHhcC
Confidence 4579999998 9999999999999886 899999876543322222211 1112222 223 2 23454
Q ss_pred CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.|+||.+++.+... .....+.+..|+.-...+.+.+.+...-..+|++|
T Consensus 81 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S 131 (357)
T 1rkx_A 81 PEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT 131 (357)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred CCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEec
Confidence 89999998753211 11233456677777777777776654233455554
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.14 Score=51.56 Aligned_cols=117 Identities=13% Similarity=0.178 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHHH-hhhC----C--CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 152 QTMARDAVSTVDRLL-SQVA----P--SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~----~--~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
-.+++.+...+.... ++.. . ......++|+|||.|.||..+|..+..-|. +|+.||++....+. ..++.
T Consensus 113 L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~-~~~~g- 188 (330)
T 4e5n_A 113 VGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGA--TLQYHEAKALDTQT-EQRLG- 188 (330)
T ss_dssp HHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCC--EEEEECSSCCCHHH-HHHHT-
T ss_pred HHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCCCCcHhH-HHhcC-
Confidence 457777777765432 2221 0 034567899999999999999888755555 89999997633221 11211
Q ss_pred cCCCCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 225 GAPFLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 225 ~~~~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.. .++ +.++.||+|+++..... .++ .++ | .+.+....|.+++|+++.
T Consensus 189 ---------~~~-~~l~ell~~aDvV~l~~P~t~---~t~-~li--~-------~~~l~~mk~gailIN~ar 237 (330)
T 4e5n_A 189 ---------LRQ-VACSELFASSDFILLALPLNA---DTL-HLV--N-------AELLALVRPGALLVNPCR 237 (330)
T ss_dssp ---------EEE-CCHHHHHHHCSEEEECCCCST---TTT-TCB--C-------HHHHTTSCTTEEEEECSC
T ss_pred ---------cee-CCHHHHHhhCCEEEEcCCCCH---HHH-HHh--C-------HHHHhhCCCCcEEEECCC
Confidence 122 245 46889999999863211 011 111 1 123445568899999973
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.22 Score=47.62 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=69.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e-------- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++. +.+.+.++....++.... ..... ...|. +
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Dv~~~~~v~~~~~~ 79 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG---RSALA-IKADLTNAAEVEAAISA 79 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT---SCCEE-EECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CceEE-EEcCCCCHHHHHHHHHH
Confidence 45678999998 8999999999999987 78887 667776666666665431 11222 22232 1
Q ss_pred ---ccCCCcEEEEeccccc--CC--Ccch---HhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 242 ---MSEGSRIVIITAGVRS--LV--GETR---LQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 242 ---al~dADiVIitag~~~--k~--G~~r---~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
.+...|++|..+|... .+ ..+. ...+.-|+.-...+.+.+... .+.+.||+++
T Consensus 80 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 80 AADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 1237899999987542 11 1222 234555655444555554443 2245667665
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.006 Score=60.73 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=29.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|++|.++|+.+..+++++|++++|
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D 32 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVD 32 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 38999999999999999999999999999877
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.036 Score=58.93 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=43.6
Q ss_pred ceEEEEecccchHHHHHHHHHc------CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQ------GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~------~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVI 250 (488)
+||+|||.|.||.+++..|... |+ +|++.+.+..+....+.+. . +...... ..+. +++++||+||
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~--G--~~v~d~t--a~s~aEAa~~ADVVI 126 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAA--G--FTEESGT--LGDIWETVSGSDLVL 126 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHT--T--CCTTTTC--EEEHHHHHHHCSEEE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHC--C--CEEecCC--CCCHHHHHhcCCEEE
Confidence 7999999999999999999887 66 7766655433222222222 1 1100010 1233 6789999999
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 127 LaV 129 (525)
T 3fr7_A 127 LLI 129 (525)
T ss_dssp ECS
T ss_pred ECC
Confidence 996
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.3 Score=47.11 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=70.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
.++.+++.|+|+ |.+|..++..|+..|. +|+++|++.+.++....++..... .++. ...| .+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~ 97 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGATG----RRCLPLSMDVRAPPAVMAAVD 97 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHHS----SCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHH
Confidence 345678999998 8999999999999887 899999999888777777654211 1111 1223 21
Q ss_pred ----ccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 242 ----MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.+...|++|..+|...... .+ -...+..|+. +.+.+.+.+.+. ..+.||+++-.
T Consensus 98 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~ 165 (277)
T 4fc7_A 98 QALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITAT 165 (277)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECCS
T ss_pred HHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECch
Confidence 1337899999998543211 12 1223444543 334444444332 24667777643
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.007 Score=60.51 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=28.6
Q ss_pred cEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 132 KITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 132 ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
||+|||+|+||.++||.++.+++ +|++++|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~D 30 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGY-DDLLLIA 30 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC-SCEEEEC
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-CEEEEEc
Confidence 89999999999999999999999 8899988
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.073 Score=53.61 Aligned_cols=116 Identities=11% Similarity=0.168 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHHH-HhhhCCC--CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAPS--IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF 228 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~~--~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~ 228 (488)
-.+++.+...+... .++.... .....++|+|||.|.||..+|..+..-|. +|..||++......
T Consensus 112 L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~----------- 178 (324)
T 3hg7_A 112 LSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM--KVLGVSRSGRERAG----------- 178 (324)
T ss_dssp HHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCCTT-----------
T ss_pred HHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhCCC--EEEEEcCChHHhhh-----------
Confidence 35778887777543 2222111 34567899999999999999999877676 89999987632110
Q ss_pred CCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 229 LRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 229 ~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
........++ +.+++||+|+++..... .++ .++ | .+.+....|.+++|+++-
T Consensus 179 --~~~~~~~~~l~ell~~aDvV~l~lPlt~---~T~-~li--~-------~~~l~~mk~gailIN~aR 231 (324)
T 3hg7_A 179 --FDQVYQLPALNKMLAQADVIVSVLPATR---ETH-HLF--T-------ASRFEHCKPGAILFNVGR 231 (324)
T ss_dssp --CSEEECGGGHHHHHHTCSEEEECCCCCS---SST-TSB--C-------TTTTTCSCTTCEEEECSC
T ss_pred --hhcccccCCHHHHHhhCCEEEEeCCCCH---HHH-HHh--H-------HHHHhcCCCCcEEEECCC
Confidence 0122223455 46889999999863211 111 111 1 112344567899999873
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.029 Score=56.09 Aligned_cols=65 Identities=11% Similarity=0.194 Sum_probs=45.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIita 253 (488)
|+++||+|||+|.||..++..+...+-..-+.++|+++++ . +. ..+..++|++++ .++|+||++.
T Consensus 1 M~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~-----~~--------~gv~~~~d~~~ll~~~DvViiat 66 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-D-----TK--------TPVFDVADVDKHADDVDVLFLCM 66 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-S-----SS--------SCEEEGGGGGGTTTTCSEEEECS
T ss_pred CCCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-h-----hc--------CCCceeCCHHHHhcCCCEEEEcC
Confidence 4578999999999999988877665322234688988654 1 11 124456677654 7999999985
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.28 Score=46.39 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=65.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----------- 241 (488)
+.+++.|+|| |.+|..++..|+..|. +|++.|++++.++....++. ...... +|.+
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~--------~~~~~~D~~~~~~~~~~~~~~~~ 73 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVG--------AHPVVMDVADPASVERGFAEALA 73 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTT--------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC--------CEEEEecCCCHHHHHHHHHHHHH
Confidence 4578999998 9999999999999987 89999999877664433221 111111 1221
Q ss_pred ccCCCcEEEEecccccCCC---cc---hHhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 al~dADiVIitag~~~k~G---~~---r~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|.++|...... .+ -...+..|+.- .+.+.+.+.+. ..+.||+++-
T Consensus 74 ~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS 136 (245)
T 1uls_A 74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS 136 (245)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcc
Confidence 1235899999998653211 11 22344555543 34444444433 3456777653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.64 Score=44.72 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=68.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----c--
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----M-- 242 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----a-- 242 (488)
..+.+++.|+|| |.+|..++..|+..|. +|++.|.+ .++++....++.... .... ....| .+ .
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~---~~~~-~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG---GRAV-AIRADNRDAEAIEQAIR 101 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEE-EEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC---CcEE-EEECCCCCHHHHHHHHH
Confidence 356678999998 8999999999999987 78888664 466666666665431 1111 12223 21 1
Q ss_pred -----cCCCcEEEEecccccCCC---cc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 243 -----SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 243 -----l~dADiVIitag~~~k~G---~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
+...|++|..+|...... .+ -...+..|+.-...+.+.+... .+.+.||+++-
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 237899999998753221 12 2233455544333333333332 23456777653
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.04 Score=54.81 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=46.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccC--CCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSE--GSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~--dADiVIit 252 (488)
++||+|||+|.+|...+..+...+-. +|+ ++|+++++++..+.... +. .+|++ .++ ++|+|+++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~----------~~-~~~~~~~l~~~~~D~V~i~ 70 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADA-RLVAVADAFPAAAEAIAGAYG----------CE-VRTIDAIEAAADIDAVVIC 70 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTT----------CE-ECCHHHHHHCTTCCEEEEC
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCc-EEEEEECCCHHHHHHHHHHhC----------CC-cCCHHHHhcCCCCCEEEEe
Confidence 47999999999999988888765322 554 89999987765443321 11 45664 344 89999998
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 71 t 71 (331)
T 4hkt_A 71 T 71 (331)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.16 Score=48.22 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----ccC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MSE 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al~ 244 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.|. +.+.++....++.... .++. ...| .+ .++
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~D~~~~~~~~~~~~ 91 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG-----AQGVAIQADISKPSEVVALFD 91 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHH
Confidence 45678999998 9999999999999986 8999998 7777766666665421 1221 1223 21 222
Q ss_pred -------CCcEEEEecccccCC---Ccc---hHhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeC
Q psy12825 245 -------GSRIVIITAGVRSLV---GET---RLQLVDRNVKIFKDLIPKIAKGS-PDCILLIISN 295 (488)
Q Consensus 245 -------dADiVIitag~~~k~---G~~---r~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TN 295 (488)
+.|+||.+++..... ..+ ..+.+..|+.-...+.+.+.+.. ..+.+|+++-
T Consensus 92 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS 156 (274)
T 1ja9_A 92 KAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 156 (274)
T ss_dssp HHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence 789999998864321 111 12344555554444444433321 1255666653
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.058 Score=52.39 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=48.6
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-----hhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccC
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-----EDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSE 244 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-----~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~ 244 (488)
++||.|+|| |.+|..++..|+..+. +|++++++ +++.+. ...+... ...+... +|+ ++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~-~~~~~~~-----~~~~~~~D~~d~~~l~~~~~ 75 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQM-LLYFKQL-----GAKLIEASLDDHQRLVDALK 75 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHH-HHHHHTT-----TCEEECCCSSCHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHH-HHHHHhC-----CeEEEeCCCCCHHHHHHHHh
Confidence 578999998 9999999999999885 89999987 333322 1222211 1222211 122 4688
Q ss_pred CCcEEEEecccc
Q psy12825 245 GSRIVIITAGVR 256 (488)
Q Consensus 245 dADiVIitag~~ 256 (488)
++|+||.+++..
T Consensus 76 ~~d~vi~~a~~~ 87 (313)
T 1qyd_A 76 QVDVVISALAGG 87 (313)
T ss_dssp TCSEEEECCCCS
T ss_pred CCCEEEECCccc
Confidence 999999998653
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.051 Score=56.41 Aligned_cols=42 Identities=24% Similarity=0.286 Sum_probs=35.9
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
..++.||+|||+|.+|...+..+...|. +|..+|+++++++.
T Consensus 187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~ 228 (405)
T 4dio_A 187 TVPAAKIFVMGAGVAGLQAIATARRLGA--VVSATDVRPAAKEQ 228 (405)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSTTHHHH
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHH
Confidence 3467899999999999999888877776 89999999988764
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.53 Score=45.23 Aligned_cols=114 Identities=14% Similarity=0.230 Sum_probs=68.9
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC------------hhHHHHHHHHHhhcCCCCCCCcEE-EcCC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN------------EDRCKGEMLDLQHGAPFLRSPKIE-SGSD 239 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~------------~e~l~g~~~dL~~~~~~~~~~~v~-~ttd 239 (488)
.++.+++.|+|+ |.+|.+++..|+..|. +|+++|++ .+.++.....+.... .++. ...|
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D 79 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG-----RRCISAKVD 79 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT-----CCEEEEECC
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC-----CeEEEEeCC
Confidence 345678999998 9999999999999987 89999986 455555444454321 1221 1223
Q ss_pred ---cc-----------ccCCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 240 ---IA-----------MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 240 ---~e-----------al~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+ .+...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 80 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS 158 (281)
T 3s55_A 80 VKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSS 158 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence 21 123789999999865321 1222 233445543 4455555555443 456777763
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.038 Score=55.40 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=46.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiVIit 252 (488)
++||+|||+|.+|...+..|...+-. +| .++|+++++++..+.... .. ...+|+++ ++ ++|+|+++
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~-------~~--~~~~~~~~ll~~~~~D~V~i~ 71 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDA-ILYAISDVREDRLREMKEKLG-------VE--KAYKDPHELIEDPNVDAVLVC 71 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTE-EEEEEECSCHHHHHHHHHHHT-------CS--EEESSHHHHHHCTTCCEEEEC
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHhC-------CC--ceeCCHHHHhcCCCCCEEEEc
Confidence 46999999999999888777664322 55 488999988775544332 11 23457643 44 89999998
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 72 t 72 (344)
T 3ezy_A 72 S 72 (344)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.037 Score=58.75 Aligned_cols=93 Identities=14% Similarity=0.232 Sum_probs=62.1
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|||.|.||..+|..+...|. +|+.+|++....... .... .+ . .++ +.+++||+||.
T Consensus 253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~--~Viv~d~~~~~~~~a---~~~g------~~--~-~~l~ell~~aDiVi~ 318 (479)
T 1v8b_A 253 FLISGKIVVICGYGDVGKGCASSMKGLGA--RVYITEIDPICAIQA---VMEG------FN--V-VTLDEIVDKGDFFIT 318 (479)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH---HTTT------CE--E-CCHHHHTTTCSEEEE
T ss_pred cccCCCEEEEEeeCHHHHHHHHHHHhCcC--EEEEEeCChhhHHHH---HHcC------CE--e-cCHHHHHhcCCEEEE
Confidence 35678899999999999999998877676 899999998654211 1111 11 1 255 56899999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+.. + ++. .+.+....|.+++++++-.
T Consensus 319 ~~~t~---~------------lI~--~~~l~~MK~gailiNvgrg 346 (479)
T 1v8b_A 319 CTGNV---D------------VIK--LEHLLKMKNNAVVGNIGHF 346 (479)
T ss_dssp CCSSS---S------------SBC--HHHHTTCCTTCEEEECSST
T ss_pred CCChh---h------------hcC--HHHHhhcCCCcEEEEeCCC
Confidence 85211 1 111 1233445678988888743
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.22 Score=47.03 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=66.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++.+.......++.... . .++. ...|. +
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~--~~~~~~~~Dl~~~~~~~~~~~~ 85 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF--G--VKTKAYQCDVSNTDIVTKTIQQ 85 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH--T--CCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc--C--CeeEEEEeeCCCHHHHHHHHHH
Confidence 45678999998 9999999999999986 89999996655544444443221 0 1121 12232 1
Q ss_pred ---ccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|+||.+++...... .+ ....+..|+. +.+.+.+.+.+....+.+|+++-
T Consensus 86 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 152 (265)
T 1h5q_A 86 IDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS 152 (265)
T ss_dssp HHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 1345899999988643211 11 1223444543 33444444444333455666653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.091 Score=54.11 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=52.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc-CCCC-----CCCcEE---------EcC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG-APFL-----RSPKIE---------SGS 238 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~-~~~~-----~~~~v~---------~tt 238 (488)
..++.||+|||+|.+|...+..+...|. +|..+|+++++++.. .++... .... ...... ...
T Consensus 181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~-~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~ 257 (381)
T 3p2y_A 181 TVKPASALVLGVGVAGLQALATAKRLGA--KTTGYDVRPEVAEQV-RSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ 257 (381)
T ss_dssp EECCCEEEEESCSHHHHHHHHHHHHHTC--EEEEECSSGGGHHHH-HHTTCEECCCC-------------CHHHHHHHHH
T ss_pred CcCCCEEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence 3467899999999999999888877776 899999999887643 333211 0000 000000 001
Q ss_pred Cc-cccCCCcEEEEeccccc
Q psy12825 239 DI-AMSEGSRIVIITAGVRS 257 (488)
Q Consensus 239 d~-eal~dADiVIitag~~~ 257 (488)
++ +.+++||+||.++..|.
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg 277 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPG 277 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTT
T ss_pred HHHHHHhcCCEEEECCCCCC
Confidence 23 46899999999876553
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.19 Score=50.85 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=53.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..+|+|||+|.+|+.++..|+..|+ .+|.|+|.+. .+++..+..+.... +..++.
T Consensus 34 L~~~~VlivG~GGlG~~ia~~La~~Gv-g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln---p~v~v~ 109 (346)
T 1y8q_A 34 LRASRVLLVGLKGLGAEIAKNLILAGV-KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN---PMVDVK 109 (346)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC---TTSEEE
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC---CCeEEE
Confidence 345699999999999999999999996 5899998532 25555566666542 234454
Q ss_pred EcC-Cc-----cccCCCcEEEEec
Q psy12825 236 SGS-DI-----AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt-d~-----eal~dADiVIita 253 (488)
... +. +-++++|+||.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~dvVv~~~ 133 (346)
T 1y8q_A 110 VDTEDIEKKPESFFTQFDAVCLTC 133 (346)
T ss_dssp EECSCGGGCCHHHHTTCSEEEEES
T ss_pred EEecccCcchHHHhcCCCEEEEcC
Confidence 332 22 3478999999985
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.11 Score=54.22 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCC-CcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEG-SRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~d-ADiVIit 252 (488)
.+.+||.|||.|..|.+.|..|...|. +|..+|.++.........|... ..++....+.+ .+.+ +|+||.+
T Consensus 7 ~~~k~v~viG~G~sG~s~A~~l~~~G~--~V~~~D~~~~~~~~~~~~L~~~-----gi~~~~g~~~~~~~~~~~d~vv~s 79 (451)
T 3lk7_A 7 FENKKVLVLGLARSGEAAARLLAKLGA--IVTVNDGKPFDENPTAQSLLEE-----GIKVVCGSHPLELLDEDFCYMIKN 79 (451)
T ss_dssp TTTCEEEEECCTTTHHHHHHHHHHTTC--EEEEEESSCGGGCHHHHHHHHT-----TCEEEESCCCGGGGGSCEEEEEEC
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEeCCcccCChHHHHHHhC-----CCEEEECCChHHhhcCCCCEEEEC
Confidence 456899999999999999988988887 9999999653211122344432 22455444454 3466 9999999
Q ss_pred ccccc
Q psy12825 253 AGVRS 257 (488)
Q Consensus 253 ag~~~ 257 (488)
.+++.
T Consensus 80 pgi~~ 84 (451)
T 3lk7_A 80 PGIPY 84 (451)
T ss_dssp TTSCT
T ss_pred CcCCC
Confidence 88764
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.51 Score=44.97 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=68.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
+.++|.|+|| |.+|.+++..|+..|. +|++. +.+++.++....++.... .++. ...|. +
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 75 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG-----VKVLVVKANVGQPAKIKEMFQQ 75 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 3467888898 9999999999999987 78885 888888877777775421 1222 22232 1
Q ss_pred ---ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+..-|++|..+|...... .+. ...+.-|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS 141 (258)
T 3oid_A 76 IDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISS 141 (258)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEE
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence 1235699999998643211 121 223444543 3455555555443 456666653
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.3 Score=47.11 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=66.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH-HHHHHHHHhhcCCCCCCCcEEEcCCc---c---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR-CKGEMLDLQHGAPFLRSPKIESGSDI---A--------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~-l~g~~~dL~~~~~~~~~~~v~~ttd~---e--------- 241 (488)
+.++|.|+|| |.+|..++..|+..|. +|++.|++.+. ++....++.... ....+ ...|. +
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~~~~~~~~~ 101 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG---SDAAC-VKANVGVVEDIVRMFEEA 101 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC---CCeEE-EEcCCCCHHHHHHHHHHH
Confidence 4567888898 9999999999999987 89999997643 343444454321 11111 12231 1
Q ss_pred --ccCCCcEEEEecccccCCC---cc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G---~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+ -...+..|+.-...+.+.+.++ ...+.||+++-
T Consensus 102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 1347899999998653211 11 2234555655444444444433 23456777653
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.008 Score=60.21 Aligned_cols=32 Identities=28% Similarity=0.555 Sum_probs=30.4
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|.||.++|+.+..+++++|++++|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~D 38 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLID 38 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence 59999999999999999999999999999988
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=94.13 E-value=0.088 Score=54.45 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|||.|.||..++..+...|. +|+.+|++....+ ...++. +....++ +.++.||+|+++
T Consensus 188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~--~V~~~d~~~~~~~-~~~~~G----------~~~~~~l~ell~~aDvV~l~ 254 (393)
T 2nac_A 188 DLEAMHVGTVAAGRIGLAVLRRLAPFDV--HLHYTDRHRLPES-VEKELN----------LTWHATREDMYPVCDVVTLN 254 (393)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGGTC--EEEEECSSCCCHH-HHHHHT----------CEECSSHHHHGGGCSEEEEC
T ss_pred cCCCCEEEEEeECHHHHHHHHHHHhCCC--EEEEEcCCccchh-hHhhcC----------ceecCCHHHHHhcCCEEEEe
Confidence 4577899999999999999998866565 8999998754332 111111 1122345 458899999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.... + .++ .++ | ...+....|.+++|+++.
T Consensus 255 ~Plt--~-~t~-~li--~-------~~~l~~mk~gailIN~aR 284 (393)
T 2nac_A 255 CPLH--P-ETE-HMI--N-------DETLKLFKRGAYIVNTAR 284 (393)
T ss_dssp SCCC--T-TTT-TCB--S-------HHHHTTSCTTEEEEECSC
T ss_pred cCCc--h-HHH-HHh--h-------HHHHhhCCCCCEEEECCC
Confidence 6321 1 111 111 1 122344467888888873
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.21 Score=46.84 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=52.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----ccC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----MSE 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----al~ 244 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++ ++.++....++.... .++. ...| .+ .++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~ 77 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG-----GDAAFFAADLATSEACQQLVD 77 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT-----CEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC-----CceEEEECCCCCHHHHHHHHH
Confidence 34578999998 9999999999999887 89999998 777766666664321 1221 1223 21 232
Q ss_pred -------CCcEEEEeccc
Q psy12825 245 -------GSRIVIITAGV 255 (488)
Q Consensus 245 -------dADiVIitag~ 255 (488)
+.|+||.+++.
T Consensus 78 ~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 78 EFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHSSCSEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 79999999986
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.034 Score=50.26 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=29.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
..|+|||||..|.+.|..|+..|+ +++|+|..+
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~--~V~v~Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGH--QVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCC
Confidence 469999999999999999999998 899999754
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.046 Score=57.77 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=48.8
Q ss_pred CCCceEEEEecccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcE-EE-cCCc----cccCCCc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKI-ES-GSDI----AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v-~~-ttd~----eal~dAD 247 (488)
.++++|.|+|||.+|..++..|+.. +. +|+++|++.++++..+.. .. ... .. ..|+ +.++++|
T Consensus 21 l~~k~VlIiGAGgiG~aia~~L~~~~g~--~V~v~~R~~~ka~~la~~-~~-------~~~~~~D~~d~~~l~~~l~~~D 90 (467)
T 2axq_A 21 HMGKNVLLLGSGFVAQPVIDTLAANDDI--NVTVACRTLANAQALAKP-SG-------SKAISLDVTDDSALDKVLADND 90 (467)
T ss_dssp --CEEEEEECCSTTHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHGG-GT-------CEEEECCTTCHHHHHHHHHTSS
T ss_pred CCCCEEEEECChHHHHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHh-cC-------CcEEEEecCCHHHHHHHHcCCC
Confidence 3567899999999999999999887 44 899999998877654322 11 111 11 1222 3567999
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
+||.+++
T Consensus 91 vVIn~tp 97 (467)
T 2axq_A 91 VVISLIP 97 (467)
T ss_dssp EEEECSC
T ss_pred EEEECCc
Confidence 9999975
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.14 Score=49.17 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc----cc---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA----MS--- 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e----al--- 243 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++.+.++.....+.... ....+ ...| .+ .+
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~-~~~Dl~~~~~~~~~~~~~ 105 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG---VHSKA-YKCNISDPKSVEETISQQ 105 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC---SCEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcceE-EEeecCCHHHHHHHHHHH
Confidence 44568999998 9999999999999886 89999998776655444443321 01111 1223 21 12
Q ss_pred ----CCCcEEEEecccccC--C---Ccch---HhhHhhhHHH----HHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 ----EGSRIVIITAGVRSL--V---GETR---LQLVDRNVKI----FKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ----~dADiVIitag~~~k--~---G~~r---~dll~~N~~i----i~ei~~~I~~~~p~a~vIv~TN 295 (488)
...|+||..++.... + ..+. ...+..|+.- .+.+.+.+.+.. .+.+|+++-
T Consensus 106 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS 172 (279)
T 3ctm_A 106 EKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSS 172 (279)
T ss_dssp HHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred HHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECc
Confidence 348999999986432 1 1111 2234445443 556666666543 345666653
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.066 Score=52.11 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=52.3
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccC--CCcEEEEe
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSE--GSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~--dADiVIit 252 (488)
.++|.|+|| |.+|.+++..|+..|. +|+++|++.+. .+ .. ...+.-..+. ++++ ++|+||.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~-~~----~~-------~~Dl~d~~~~~~~~~~~~~d~vih~ 67 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRAR-PK----FE-------QVNLLDSNAVHHIIHDFQPHVIVHC 67 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC------------------------------CHHHHHHHCCSEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCC-CC----eE-------EecCCCHHHHHHHHHhhCCCEEEEC
Confidence 368999999 9999999999998885 89999976542 00 00 0111111122 2455 48999999
Q ss_pred cccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++..... .....+.+..|+.-...+.+.+.+... .+|++|
T Consensus 68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S 109 (315)
T 2ydy_A 68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS 109 (315)
T ss_dssp C-------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 8754321 122344556677777777777776543 455555
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.13 Score=47.92 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
+.++|.|+|+ |.+|..++..|+..|...+|+++|++.+.++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~ 44 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE 44 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHH
Confidence 4578999998 99999999999988821289999998876653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.3 Score=47.01 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=66.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA--------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e--------- 241 (488)
++.++|.|+|+ |.+|..++..|+..|. +|+++|++++.++....++... .. ...| .+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-------~~-~~~Dv~d~~~v~~~~~~~ 76 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGA-------VF-ILCDVTQEDDVKTLVSET 76 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTE-------EE-EECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC-------eE-EEcCCCCHHHHHHHHHHH
Confidence 45678999998 9999999999999986 8999999988776554443211 11 1122 21
Q ss_pred --ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|.....+ .+. ...+..|+. +.+...+.+.+. .+.+|+++-
T Consensus 77 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS 141 (270)
T 1yde_A 77 IRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS 141 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred HHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcC
Confidence 1237899999998643211 111 233444543 334444444333 355676653
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.092 Score=52.84 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c----cccC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I----AMSE 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~----eal~ 244 (488)
+++++|.|+|| |.+|..++..|+..+ . +|+++|++.+.... .+. ...++. ...| . +.++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~---~l~------~~~~v~~~~~Dl~d~~~l~~~~~ 98 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEKI---NVP------DHPAVRFSETSITDDALLASLQD 98 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCGG---GSC------CCTTEEEECSCTTCHHHHHHCCS
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCchh---hcc------CCCceEEEECCCCCHHHHHHHhh
Confidence 45679999998 999999999999988 5 89999986542210 010 011222 1223 2 3578
Q ss_pred CCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
++|+||.+++..... .....+.+..|+.....+.+.+.+. ... .+|++|
T Consensus 99 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~S 150 (377)
T 2q1s_A 99 EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSA 150 (377)
T ss_dssp CCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEE
T ss_pred CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeC
Confidence 999999998743211 0123455677888888888888775 333 355554
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.17 Score=50.16 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=56.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh----hHHHHHHHHHhhcCCCCCCCcEEEc--CCc----ccc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE----DRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMS 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~----e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal 243 (488)
|.++||.|+|| |.+|..++..|+..+. +|++++++. ++++ ....+... ...+... +|. +++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~-~~~~l~~~-----~v~~~~~Dl~d~~~l~~~~ 79 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAK-IFKALEDK-----GAIIVYGLINEQEAMEKIL 79 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHH-HHHHHHHT-----TCEEEECCTTCHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHH-HHHHHHhC-----CcEEEEeecCCHHHHHHHH
Confidence 45679999999 9999999999998885 899999865 3333 12233221 1223221 122 357
Q ss_pred C--CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC
Q psy12825 244 E--GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 244 ~--dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
+ ++|+||.+++.. |+..-+.+++.+.+..
T Consensus 80 ~~~~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g 110 (346)
T 3i6i_A 80 KEHEIDIVVSTVGGE-------------SILDQIALVKAMKAVG 110 (346)
T ss_dssp HHTTCCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred hhCCCCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence 7 999999998642 3333455555655554
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.15 Score=54.65 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHH-hhhCC----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC
Q psy12825 152 QTMARDAVSTVDRLL-SQVAP----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA 226 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~ 226 (488)
-.+++.+...+.... ++... ......++|+|||.|.||..+|..+...|. +|+.||++..... +.++.
T Consensus 112 l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~g--- 184 (529)
T 1ygy_A 112 LAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGA--YVVAYDPYVSPAR--AAQLG--- 184 (529)
T ss_dssp HHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECTTSCHHH--HHHHT---
T ss_pred HHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEECCCCChhH--HHhcC---
Confidence 467777777765432 22210 034567899999999999999998877676 8999999764221 22221
Q ss_pred CCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 227 PFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 227 ~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+... ++ +.+++||+|+++.
T Consensus 185 -------~~~~-~l~e~~~~aDvV~l~~ 204 (529)
T 1ygy_A 185 -------IELL-SLDDLLARADFISVHL 204 (529)
T ss_dssp -------CEEC-CHHHHHHHCSEEEECC
T ss_pred -------cEEc-CHHHHHhcCCEEEECC
Confidence 1122 55 5688999999996
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.46 Score=44.84 Aligned_cols=112 Identities=18% Similarity=0.268 Sum_probs=64.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc----c------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI----A------ 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~----e------ 241 (488)
++.++|.|+|+ |.+|..++..|+..|. + |+++|++++. ....++.+.. . ..++. ...|. +
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~--~~~~~l~~~~--~-~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENP--TALAELKAIN--P-KVNITFHTYDVTVPVAESKKLL 75 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCH--HHHHHHHHHC--T-TSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchH--HHHHHHHHhC--C-CceEEEEEEecCCChHHHHHHH
Confidence 45678999998 9999999999999886 5 8999997632 1223333321 0 11221 12232 1
Q ss_pred -----ccCCCcEEEEecccccCCCcchHhhHhhhHH----HHHHHHHHHhccC--CCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRSLVGETRLQLVDRNVK----IFKDLIPKIAKGS--PDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~G~~r~dll~~N~~----ii~ei~~~I~~~~--p~a~vIv~TN 295 (488)
.+.+.|+||.++|.... ......+..|+. +.+.+.+.+.+.. +.+.+|+++-
T Consensus 76 ~~~~~~~g~id~lv~~Ag~~~~--~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS 138 (254)
T 1sby_A 76 KKIFDQLKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHhcCCCCEEEECCccCCH--HHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence 12378999999986421 223334455544 3444445454432 2466777764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.067 Score=52.81 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c----cccC
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I----AMSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~----eal~ 244 (488)
..++++|.|+|| |.+|..++..|+..|. +|+++|++...... .+.+ . .++. ...| . +.++
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~---~l~~---~---~~~~~~~~Dl~d~~~~~~~~~ 86 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRRE---HLKD---H---PNLTFVEGSIADHALVNQLIG 86 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG---GSCC---C---TTEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccchh---hHhh---c---CCceEEEEeCCCHHHHHHHHh
Confidence 345789999998 9999999999999885 89999986432110 0110 0 1221 1223 2 2456
Q ss_pred C--CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 245 G--SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 245 d--ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ +|+||.+++..........+ +..|+.-...+.+.+.+.... .+|++|
T Consensus 87 ~~~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S 136 (333)
T 2q1w_A 87 DLQPDAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ 136 (333)
T ss_dssp HHCCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred ccCCcEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence 6 99999998754322112222 666777777777777765433 455554
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.081 Score=57.58 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=53.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh-------------------hHHHHHHHHHhhcCCCCCCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE-------------------DRCKGEMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~-------------------e~l~g~~~dL~~~~~~~~~~~v~ 235 (488)
.+..||.|||+|.+|+.++..|+..|+ .+|.|+|.+. .+++..+..+.... +..++.
T Consensus 324 L~~arVLIVGaGGLGs~vA~~La~aGV-G~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN---P~V~v~ 399 (615)
T 4gsl_A 324 IKNTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF---PLMDAT 399 (615)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC---TTCEEE
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC---CCcEEE
Confidence 456799999999999999999999997 5899999754 35565666666542 233444
Q ss_pred EcC------------------C---c-cccCCCcEEEEec
Q psy12825 236 SGS------------------D---I-AMSEGSRIVIITA 253 (488)
Q Consensus 236 ~tt------------------d---~-eal~dADiVIita 253 (488)
... + . +.++++|+||.+.
T Consensus 400 ~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~t 439 (615)
T 4gsl_A 400 GVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLV 439 (615)
T ss_dssp EECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECC
T ss_pred EeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecC
Confidence 321 1 1 2367899999885
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.28 Score=46.47 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=50.1
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc----c
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA----M 242 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e----a 242 (488)
...++++|.|+|| |.+|..++..|+..+. ..+|+++|++.+.++. ..++.... .++. ...| .+ .
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l~~~~-----~~~~~~~~Dl~~~~~v~~~ 90 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKNH-----SNIHILEIDLRNFDAYDKL 90 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHHHC-----TTEEEEECCTTCGGGHHHH
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH-HHHhhccC-----CceEEEEecCCChHHHHHH
Confidence 3445678999998 9999999999998871 1289999998765543 23443221 1121 1122 21 1
Q ss_pred cC---------CCcEEEEeccccc
Q psy12825 243 SE---------GSRIVIITAGVRS 257 (488)
Q Consensus 243 l~---------dADiVIitag~~~ 257 (488)
++ ..|+||.++|...
T Consensus 91 ~~~~~~~~g~~~id~li~~Ag~~~ 114 (267)
T 1sny_A 91 VADIEGVTKDQGLNVLFNNAGIAP 114 (267)
T ss_dssp HHHHHHHHGGGCCSEEEECCCCCC
T ss_pred HHHHHHhcCCCCccEEEECCCcCC
Confidence 22 6999999998654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.39 Score=46.35 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=67.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
++.+++.|+|| |.+|..++..|+..|. +|++.|.+ +.++....++.... .++. ...|. +
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~-~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~ 100 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRT-DGVKEVADEIADGG-----GSAEAVVADLADLEGAANVAEE 100 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESS-THHHHHHHHHHTTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCH-HHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHHHH
Confidence 45678999998 9999999999999987 89999955 44555555554321 1221 12232 1
Q ss_pred --ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 --MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 --al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 101 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS 165 (273)
T 3uf0_A 101 LAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIAS 165 (273)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence 1237899999998653211 121 223444543 4455555555443 455777653
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.063 Score=53.99 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=44.3
Q ss_pred CCCCCceEEEEecccchHHHHHHHHH-----cCC-CCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILT-----QGI-YSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S- 243 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~-----~~l-~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l- 243 (488)
+.|++.||+|||+|.+|..-+..+.. ... ..+ +.++|+++++++..+.++.- . ...+|+++ |
T Consensus 21 ~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-------~--~~y~d~~ell~ 91 (393)
T 4fb5_A 21 QSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-------E--KATADWRALIA 91 (393)
T ss_dssp ---CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-------S--EEESCHHHHHH
T ss_pred cCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-------C--eecCCHHHHhc
Confidence 56788899999999999865544321 111 113 56889999988876555421 1 23568754 3
Q ss_pred -CCCcEEEEec
Q psy12825 244 -EGSRIVIITA 253 (488)
Q Consensus 244 -~dADiVIita 253 (488)
.+.|+|+++.
T Consensus 92 ~~~iDaV~Iat 102 (393)
T 4fb5_A 92 DPEVDVVSVTT 102 (393)
T ss_dssp CTTCCEEEECS
T ss_pred CCCCcEEEECC
Confidence 4789999985
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=93.89 E-value=0.32 Score=46.95 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=40.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|++++.++....++..
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~ 74 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLE 74 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHH
Confidence 45678999999 9999999999999986 899999999888766655543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.092 Score=54.70 Aligned_cols=75 Identities=9% Similarity=0.074 Sum_probs=49.1
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeE-EEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC----Cccc-cC--C
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNF-CLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS----DIAM-SE--G 245 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el-~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt----d~ea-l~--d 245 (488)
.++++||+|||+|.+|...+..+...+-. +| .++|+++++++..+..+.... + ......+ |+++ ++ +
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~-~lvav~d~~~~~~~~~a~~~~~~g-~---~~~~~~~~~~~~~~~ll~~~~ 91 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDV-EIVAFADPDPYMVGRAQEILKKNG-K---KPAKVFGNGNDDYKNMLKDKN 91 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSCHHHHHHHHHHHHHTT-C---CCCEEECSSTTTHHHHTTCTT
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHHHHHHHHhcC-C---CCCceeccCCCCHHHHhcCCC
Confidence 35678999999999999877777654322 44 689999998876655553210 1 1122234 7754 54 6
Q ss_pred CcEEEEec
Q psy12825 246 SRIVIITA 253 (488)
Q Consensus 246 ADiVIita 253 (488)
.|+|+++.
T Consensus 92 vD~V~i~t 99 (444)
T 2ixa_A 92 IDAVFVSS 99 (444)
T ss_dssp CCEEEECC
T ss_pred CCEEEEcC
Confidence 89999985
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.19 Score=47.36 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=65.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA-------MS 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e-------al 243 (488)
++.++|.|+|| |.+|..++..|+..|. +|+++|+++++++... ++.+ ... ...| .+ .+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~-~~~~-------~~~-~~~D~~~~~~~~~~~~~~ 72 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKLQELE-KYPG-------IQT-RVLDVTKKKQIDQFANEV 72 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHGGGG-GSTT-------EEE-EECCTTCHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH-hccC-------ceE-EEeeCCCHHHHHHHHHHh
Confidence 45578899998 9999999999999986 8999999887654322 2110 111 1122 21 25
Q ss_pred CCCcEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 244 EGSRIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 244 ~dADiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
...|++|..+|..... ..+. ...+..|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 73 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS 133 (246)
T 2ag5_A 73 ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSS 133 (246)
T ss_dssp SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred CCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 6789999999864321 1111 223444443 3444455454433 456777654
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.079 Score=52.26 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=67.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc-------cccCC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI-------AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~-------eal~d 245 (488)
++++||.|+|| |.+|..++..|+..|...+|+.+|...... ....+.... ...++.. ..|+ +++++
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~--~~~~l~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~ 96 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG--NLNNVKSIQ---DHPNYYFVKGEIQNGELLEHVIKE 96 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC--CGGGGTTTT---TCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc--chhhhhhhc---cCCCeEEEEcCCCCHHHHHHHHhh
Confidence 45689999999 999999999999988444788888743111 111122211 1122221 2332 24555
Q ss_pred --CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 --SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 --ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+|+||.+++..... .....+.+..|+.-...+.+.+.+..... +|++|
T Consensus 97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~S 148 (346)
T 4egb_A 97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-LVQVS 148 (346)
T ss_dssp HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSE-EEEEE
T ss_pred cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEeC
Confidence 99999998754321 12334556778888888888888775443 44444
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.18 Score=48.95 Aligned_cols=111 Identities=13% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---IA------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e------- 241 (488)
.++.++|.|+|| |.+|..++..|+..|. +|++.|+++++++....++. .++. ...| ++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dl~d~~~v~~~~~ 82 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEAAARTMA--------GQVEVRELDLQDLSSVRRFAD 82 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHTTSS--------SEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc--------CCeeEEEcCCCCHHHHHHHHH
Confidence 345678999998 9999999999999986 89999999887765443331 1222 1123 21
Q ss_pred ccCCCcEEEEecccccCCC-c---chHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 MSEGSRIVIITAGVRSLVG-E---TRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 al~dADiVIitag~~~k~G-~---~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... . .-...+..|+.-...+.+.+...-.. .||+++-
T Consensus 83 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS 139 (291)
T 3rd5_A 83 GVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS 139 (291)
T ss_dssp TCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred hcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence 2346799999998753221 1 12334566666555556655554322 3555543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.064 Score=55.84 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=49.1
Q ss_pred CCCCCceEEEEecccchH-HHHHHHHHcCCCCe-EEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCc
Q psy12825 173 IESPDQKITVVGAGQVGM-ACTYSILTQGIYSN-FCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~-~ia~~La~~~l~~e-l~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dAD 247 (488)
..++++||+|||+|.+|. .++..+...+-. + +.++|.++++++....... . ....+...+|+++ ++ ++|
T Consensus 79 ~~~~~irigiIG~G~~g~~~~~~~l~~~~~~-~lvav~d~~~~~~~~~a~~~g----~-~~~~~~~~~~~~~ll~~~~vD 152 (433)
T 1h6d_A 79 PEDRRFGYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG----V-DPRKIYDYSNFDKIAKDPKID 152 (433)
T ss_dssp CCCCCEEEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT----C-CGGGEECSSSGGGGGGCTTCC
T ss_pred CCCCceEEEEECCcHHHHHHHHHHHhhCCCc-EEEEEEcCCHHHHHHHHHHhC----C-CcccccccCCHHHHhcCCCCC
Confidence 456678999999999997 677766543322 4 4689999987765433321 0 0112444567755 44 799
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
+|+++.
T Consensus 153 ~V~iat 158 (433)
T 1h6d_A 153 AVYIIL 158 (433)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 999985
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.16 Score=50.07 Aligned_cols=113 Identities=20% Similarity=0.191 Sum_probs=66.9
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH------HHHHHHHHhhcCCCCCCCcEEEc--CCc----ccc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR------CKGEMLDLQHGAPFLRSPKIESG--SDI----AMS 243 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~------l~g~~~dL~~~~~~~~~~~v~~t--td~----eal 243 (488)
+++|.|+|| |.+|++++..|+..|. +|+++|++... ......++.... .....+... +|. +.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~ 77 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLF 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHH
Confidence 368999998 9999999999999886 89999874321 111122232210 011122221 122 234
Q ss_pred C--CCcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 244 E--GSRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 244 ~--dADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+ ++|+||.+++..... .....+.+..|+.-...+.+.+.+.... .+|++|
T Consensus 78 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S 131 (348)
T 1ek6_A 78 KKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS 131 (348)
T ss_dssp HHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred HhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence 5 799999998753211 0123455677888778888887765443 355554
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.26 Score=50.99 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHH-HhhhCC----CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC
Q psy12825 153 TMARDAVSTVDRL-LSQVAP----SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP 227 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~----~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~ 227 (488)
.+++.+...+... .++... ......++|+|||.|.||..+|..+..-|. +|+.||++.... .
T Consensus 116 ~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~----------~- 182 (404)
T 1sc6_A 116 LLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGM--YVYFYDIENKLP----------L- 182 (404)
T ss_dssp HHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCC----------C-
T ss_pred HHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHHHHHHHHCCC--EEEEEcCCchhc----------c-
Confidence 4667776666442 222211 134578899999999999999998876666 899999865310 0
Q ss_pred CCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe--CCch
Q psy12825 228 FLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS--NPVD 298 (488)
Q Consensus 228 ~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T--NPvd 298 (488)
..+....++ +.++.||+|++..... + .++ .++ | . +.+....|.+++|+++ .++|
T Consensus 183 ----~~~~~~~~l~ell~~aDvV~l~~P~t--~-~t~-~li--~----~---~~l~~mk~ga~lIN~aRg~~vd 239 (404)
T 1sc6_A 183 ----GNATQVQHLSDLLNMSDVVSLHVPEN--P-STK-NMM--G----A---KEISLMKPGSLLINASRGTVVD 239 (404)
T ss_dssp ----TTCEECSCHHHHHHHCSEEEECCCSS--T-TTT-TCB--C----H---HHHHHSCTTEEEEECSCSSSBC
T ss_pred ----CCceecCCHHHHHhcCCEEEEccCCC--h-HHH-HHh--h----H---HHHhhcCCCeEEEECCCChHHh
Confidence 112233456 4588999999986321 1 111 111 1 1 2233445788889887 3455
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.5 Score=45.05 Aligned_cols=117 Identities=12% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEE-EeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc--------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCL-IDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA-------- 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L-~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e-------- 241 (488)
.+..++|.|+|| |.+|..++..|+..|. +|++ .+.+.+.++....++.... ....+... +|.+
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~ 97 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG---GNGRLLSFDVANREQCREVLEH 97 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC---CceEEEEecCCCHHHHHHHHHH
Confidence 344567889998 9999999999999987 6755 5567777776666665431 11122211 1221
Q ss_pred ---ccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+ ....+..|+. +.+.....+.+....+.||+++-
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 164 (267)
T 4iiu_A 98 EIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS 164 (267)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 1237899999998654221 11 2233445543 33444444443445677777764
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.044 Score=54.92 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=30.5
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+||+|||||.+|.++|..|+..|+ +++++|.++
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G~--~v~v~Er~~ 34 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHGI--KVTIYERNS 34 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence 3799999999999999999999998 899998743
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.7 Score=45.03 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=68.2
Q ss_pred CCCceEEEEec-c--cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc-------
Q psy12825 175 SPDQKITVVGA-G--QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G--~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e------- 241 (488)
++.+++.|+|+ | .+|..++..|+..|. +|++.|++++..+.......... ... ....| .+
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~-~~~~Dv~d~~~v~~~~~ 100 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLG----VKL-TVPCDVSDAESVDNMFK 100 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHT----CCE-EEECCTTCHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC----CeE-EEEcCCCCHHHHHHHHH
Confidence 34568899998 4 899999999999987 89999998765543322222221 111 12223 21
Q ss_pred ----ccCCCcEEEEecccccC-----C--Ccc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 ----MSEGSRIVIITAGVRSL-----V--GET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 ----al~dADiVIitag~~~k-----~--G~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|.++|.... + ..+ -...+..|+.-...+.+.+..+ ...+.||+++-
T Consensus 101 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 101 VLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 12367999999986531 1 112 2234556665555555555544 23567777764
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.025 Score=56.47 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEEEE
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIVII 251 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiVIi 251 (488)
++++||+|||+|.+|..++..+...+...-+.++|+++++++..+.. + ...+ ..+|+++ +. ++|+|++
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~------~-~~~~--~~~~~~~ll~~~~~D~V~i 73 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANK------Y-HLPK--AYDKLEDMLADESIDVIYV 73 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---C------C-CCSC--EESCHHHHHTCTTCCEEEE
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHH------c-CCCc--ccCCHHHHhcCCCCCEEEE
Confidence 46689999999999998888877654322345889988766532211 1 1111 3467753 55 7999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 74 ~t 75 (329)
T 3evn_A 74 AT 75 (329)
T ss_dssp CS
T ss_pred CC
Confidence 85
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.6 Score=45.20 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=69.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChh-------HHHHHHHHHhhcCCCCCCCcEE-EcCC---cc-
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNED-------RCKGEMLDLQHGAPFLRSPKIE-SGSD---IA- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e-------~l~g~~~dL~~~~~~~~~~~v~-~ttd---~e- 241 (488)
++.+++.|+|| |.+|..++..|+..|. +|+++|++.+ .++....++.... .++. ...| .+
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~ 79 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG-----GQALPIVGDIRDGDA 79 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT-----SEEEEEECCTTSHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC-----CcEEEEECCCCCHHH
Confidence 35678889998 9999999999999887 8999999876 3555555555431 1221 1122 11
Q ss_pred ----------ccCCCcEEEEecccccCC---Ccch---HhhHhhhHHHHHHHHHHHhcc---CCCcEEEEEeC
Q psy12825 242 ----------MSEGSRIVIITAGVRSLV---GETR---LQLVDRNVKIFKDLIPKIAKG---SPDCILLIISN 295 (488)
Q Consensus 242 ----------al~dADiVIitag~~~k~---G~~r---~dll~~N~~ii~ei~~~I~~~---~p~a~vIv~TN 295 (488)
.+...|++|.++|..... ..+. ...+.-|+.-...+.+.+... ...+.||+++-
T Consensus 80 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS 152 (285)
T 3sc4_A 80 VAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSP 152 (285)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 123789999999865321 1222 234556665444455544433 23456777764
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.11 Score=46.04 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=39.2
Q ss_pred CceEEEEec----ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEE
Q psy12825 177 DQKITVVGA----GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVII 251 (488)
Q Consensus 177 ~~KIaIIGA----G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIi 251 (488)
+.+|+|||+ |.+|..++..|...|+ +| +++|+... + ..+. -+....+++++ .++|+|++
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~--~v--~~vnp~~~-g--~~i~---------G~~~~~sl~el~~~~Dlvii 76 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGY--HV--IPVSPKVA-G--KTLL---------GQQGYATLADVPEKVDMVDV 76 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTC--CE--EEECSSST-T--SEET---------TEECCSSTTTCSSCCSEEEC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCC--EE--EEeCCccc-c--cccC---------CeeccCCHHHcCCCCCEEEE
Confidence 578999999 8899999999988887 54 45444321 0 0010 12223344443 47899999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 77 ~v 78 (145)
T 2duw_A 77 FR 78 (145)
T ss_dssp CS
T ss_pred Ee
Confidence 85
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.52 Score=45.89 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=71.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCC---c---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSD---I--------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd---~--------- 240 (488)
+.+++.|+|| |.+|..++..|+..|. ...|++.|++.+.++....++..... ..++.. ..| .
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP---NAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT---TCEEEEEECCTTCGGGHHHHHHT
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC---CCeEEEEECCCCCHHHHHHHHHH
Confidence 3568899998 9999999999998764 23899999999988887777765311 112221 122 2
Q ss_pred --cccCCCcEEEEecccccCC----Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 --AMSEGSRIVIITAGVRSLV----GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 --eal~dADiVIitag~~~k~----G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+...|++|..+|..... ..+. ...+.-|+. +.+.+.+.+.+.. .+.||+++-
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS 175 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGS 175 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence 1234689999999864321 1122 233444543 4455555555543 355666653
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.35 Score=46.28 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=68.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-eCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c--------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLI-DSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A-------- 241 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e-------- 241 (488)
+.++|.|+|| |.+|..++..|+..|. +|++. +.+.+.++....++.... .++. ...|. +
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~v~~~~~~ 97 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG-----GEAVAIPGDVGNAADIAAMFSA 97 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT-----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHHHHH
Confidence 3456777898 9999999999999987 77665 778777776666665431 1222 12232 1
Q ss_pred ---ccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhcc--CCCcEEEEEeC
Q psy12825 242 ---MSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKG--SPDCILLIISN 295 (488)
Q Consensus 242 ---al~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~--~p~a~vIv~TN 295 (488)
.+...|+||..+|....++ .+. ...+..|+. +.+.+.+.+.+. ...+.||+++-
T Consensus 98 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS 167 (272)
T 4e3z_A 98 VDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS 167 (272)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence 1236799999998654321 121 233444433 445555556553 23566777764
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.031 Score=54.20 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=49.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-------hHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-------DRCKGEMLDLQHGAPFLRSPKIESG--SDI----AM 242 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-------e~l~g~~~dL~~~~~~~~~~~v~~t--td~----ea 242 (488)
++||.|+|| |.+|.+++..|+..|. +|+.++++. ++++. ..++.+. ...+... +|. ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~-~~~l~~~-----~v~~v~~D~~d~~~l~~~ 73 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEEL-IDNYQSL-----GVILLEGDINDHETLVKA 73 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHH-HHHHHHT-----TCEEEECCTTCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHH-HHHHHhC-----CCEEEEeCCCCHHHHHHH
Confidence 568999999 9999999999998885 789999876 44432 2233221 1222221 122 46
Q ss_pred cCCCcEEEEeccc
Q psy12825 243 SEGSRIVIITAGV 255 (488)
Q Consensus 243 l~dADiVIitag~ 255 (488)
++++|+||.+++.
T Consensus 74 ~~~~d~vi~~a~~ 86 (307)
T 2gas_A 74 IKQVDIVICAAGR 86 (307)
T ss_dssp HTTCSEEEECSSS
T ss_pred HhCCCEEEECCcc
Confidence 8899999999864
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.15 Score=48.72 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=62.1
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccC--CCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSE--GSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~--dADiVIita 253 (488)
|||.|+|| |.+|++++..|+..|. +|+.+++.. .|+.+ ..+. +.++ ++|+||.++
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-------~D~~d------------~~~~~~~~~~~~~d~vi~~a 64 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-------LDITN------------ISQVQQVVQEIRPHIIIHCA 64 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-------SCTTC------------HHHHHHHHHHHCCSEEEECC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-------cCCCC------------HHHHHHHHHhcCCCEEEECC
Confidence 48999998 9999999999988876 899998721 01100 0011 2333 689999998
Q ss_pred ccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 254 GVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 254 g~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+..... .....+.+..|+.-...+.+.+.+... .+|++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 105 (287)
T 3sc6_A 65 AYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS 105 (287)
T ss_dssp CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred cccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 754321 123455667788877888888877654 355554
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.2 Score=43.98 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred CCceEEEEec----ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccC-CCcEEE
Q psy12825 176 PDQKITVVGA----GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSE-GSRIVI 250 (488)
Q Consensus 176 ~~~KIaIIGA----G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~-dADiVI 250 (488)
++.+|+|||+ |.+|+.++..|...|+ + +|++|+.+... ++ ..+....+.+++. ..|+++
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~--~--v~~vnp~~~~~---~i---------~G~~~~~sl~el~~~vDlav 75 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGY--R--VLPVNPRFQGE---EL---------FGEEAVASLLDLKEPVDILD 75 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTC--E--EEEECGGGTTS---EE---------TTEECBSSGGGCCSCCSEEE
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCC--E--EEEeCCCcccC---cC---------CCEEecCCHHHCCCCCCEEE
Confidence 3568999999 7999999999888887 4 77777753110 11 1122334455543 699999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCC
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTN 321 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~ 321 (488)
++.. .+...++.+++.+....++++..+-...-+.+.+.+ .|+ +++|=.|.
T Consensus 76 i~vp----------------~~~~~~v~~~~~~~gi~~i~~~~g~~~~~~~~~a~~-~Gi---r~vgpnc~ 126 (140)
T 1iuk_A 76 VFRP----------------PSALMDHLPEVLALRPGLVWLQSGIRHPEFEKALKE-AGI---PVVADRCL 126 (140)
T ss_dssp ECSC----------------HHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHHHHH-TTC---CEEESCCH
T ss_pred EEeC----------------HHHHHHHHHHHHHcCCCEEEEcCCcCHHHHHHHHHH-cCC---EEEcCCcc
Confidence 9852 234444454544454455433322333344444443 355 57764343
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.03 Score=55.14 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=48.7
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.+.++|.|+|+|.+|.+++..|+..|. .+|.+++++.++++..+ . ........+. +.+.++|+||.+.
T Consensus 115 l~~k~vlvlGaGg~g~aia~~L~~~G~-~~v~v~~R~~~~a~~la----~------~~~~~~~~~~~~~~~~aDiVInaT 183 (277)
T 3don_A 115 IEDAYILILGAGGASKGIANELYKIVR-PTLTVANRTMSRFNNWS----L------NINKINLSHAESHLDEFDIIINTT 183 (277)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHTTCC-SCCEEECSCGGGGTTCC----S------CCEEECHHHHHHTGGGCSEEEECC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHH----H------hcccccHhhHHHHhcCCCEEEECc
Confidence 345789999999999999999988774 47999999987654321 1 1122112233 3578999999986
Q ss_pred c
Q psy12825 254 G 254 (488)
Q Consensus 254 g 254 (488)
.
T Consensus 184 p 184 (277)
T 3don_A 184 P 184 (277)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.064 Score=53.70 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=46.5
Q ss_pred CceEEEEecccchHHHHHHHH-HcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSIL-TQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIVII 251 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La-~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiVIi 251 (488)
++||+|||+|.+|...+..+. ...-. +|+ ++|+++++++..+..+. . .....+|+++ ++ ++|+|++
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~-~l~av~d~~~~~~~~~~~~~g------~--~~~~~~~~~~ll~~~~~D~V~i 72 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGA-EIVAVTDVNQEAAQKVVEQYQ------L--NATVYPNDDSLLADENVDAVLV 72 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSE-EEEEEECSSHHHHHHHHHHTT------C--CCEEESSHHHHHHCTTCCEEEE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCc-EEEEEEcCCHHHHHHHHHHhC------C--CCeeeCCHHHHhcCCCCCEEEE
Confidence 369999999999999888887 33222 544 88999987775443331 0 1234567754 43 5999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 73 ~t 74 (344)
T 3mz0_A 73 TS 74 (344)
T ss_dssp CS
T ss_pred CC
Confidence 85
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.075 Score=50.29 Aligned_cols=108 Identities=10% Similarity=0.077 Sum_probs=65.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEE-e--CChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------cccCC
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLI-D--SNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------AMSEG 245 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~-D--i~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------eal~d 245 (488)
+++.|+|+ |.+|..++..|+..|. +|++. | ++++.++....++ .. .++.-..+. +.+..
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~~------~~~~~~~~v~~~~~~~~~~~g~ 72 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-PG------TIALAEQKPERLVDATLQHGEA 72 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-TT------EEECCCCCGGGHHHHHGGGSSC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-CC------CcccCHHHHHHHHHHHHHHcCC
Confidence 56888898 9999999999999987 89999 6 8888776655544 10 111101111 23457
Q ss_pred CcEEEEecccccC----C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 246 SRIVIITAGVRSL----V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 246 ADiVIitag~~~k----~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
.|++|..+|.... + ..+. ...+..|+. +.+.+.+.+.+. ..+.||+++-
T Consensus 73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS 134 (244)
T 1zmo_A 73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITS 134 (244)
T ss_dssp EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence 8999999986532 1 1121 223445543 345555555443 3466777764
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.16 Score=49.91 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=66.5
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADiV 249 (488)
+++|.|+|| |.+|++++..|+..+...+|+++|++..... ...+.... .....+... +|. ++++++|+|
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~v 79 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN--KANLEAIL--GDRVELVVGDIADAELVDKLAAKADAI 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC--GGGTGGGC--SSSEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCC--hhHHhhhc--cCCeEEEECCCCCHHHHHHHhhcCCEE
Confidence 578999998 9999999999998833338999998542100 00111110 011112111 122 357899999
Q ss_pred EEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++..... .....+.+..|+.-...+.+.+.+... .+|++|
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S 124 (348)
T 1oc2_A 80 VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS 124 (348)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred EECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence 9998754210 012234566777777777777777643 455554
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.54 Score=45.17 Aligned_cols=112 Identities=13% Similarity=0.134 Sum_probs=68.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc---c-------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI---A------- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~---e------- 241 (488)
++.++|.|+|+ |.+|.+++..|+..|. +|++.|. +.+.++....++.... .++. ...|. +
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~d~~~v~~~~~ 98 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG-----GEAFAVKADVSQESEVEALFA 98 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHH
Confidence 34567888898 9999999999999987 8889888 6666666666665431 1221 22232 1
Q ss_pred ----ccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 ----MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 ----al~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+...|++|..+|...... .+. ...+.-|+. +.+.+.+.+.+.. .+.||+++
T Consensus 99 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is 164 (269)
T 4dmm_A 99 AVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIA 164 (269)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence 1237899999998653221 121 223444543 3455555555443 35566665
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.11 Score=52.22 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH----------------HHHHHhhcCCCCCCCcEE
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG----------------EMLDLQHGAPFLRSPKIE 235 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g----------------~~~dL~~~~~~~~~~~v~ 235 (488)
....+++|.|+|| |.+|++++..|+..|. +|+++|.+...... ...++.... .....+.
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~ 82 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIELY 82 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEEE
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc--CCceEEE
Confidence 3456789999998 9999999999999886 89999986432110 111111110 0112222
Q ss_pred EcCCc-------cccCC--CcEEEEecccccCC--Ccch---HhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 236 SGSDI-------AMSEG--SRIVIITAGVRSLV--GETR---LQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 236 ~ttd~-------eal~d--ADiVIitag~~~k~--G~~r---~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..|. +.+++ +|+||.+++..... ..+. ...+..|+.-...+.+.+.+......+|++|
T Consensus 83 -~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~S 154 (404)
T 1i24_A 83 -VGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG 154 (404)
T ss_dssp -ESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred -ECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 2232 23555 99999998753211 0111 2355678887888888887765433455555
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.11 Score=50.94 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=65.1
Q ss_pred ceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC----c-cccCCCcE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD----I-AMSEGSRI 248 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td----~-eal~dADi 248 (488)
|||.|+|| |.+|++++..|+.. +. +|+++|++.+.++. +.. .....+... +| . ++++++|+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAISR----FLN----HPHFHFVEGDISIHSEWIEYHVKKCDV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGGG----GTT----CTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHHH----hhc----CCCeEEEeccccCcHHHHHhhccCCCE
Confidence 58999999 99999999999987 65 89999997754321 111 011111111 12 1 24568999
Q ss_pred EEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 249 VIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 249 VIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
||.+++..... .....+.+..|+.-...+.+.+.+.. ..+|++|-
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS 117 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST 117 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence 99998753211 01233455667666667777776654 44565553
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.21 Score=53.35 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=73.4
Q ss_pred CCceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcccc-CCCcEEEEec
Q psy12825 176 PDQKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMS-EGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal-~dADiVIita 253 (488)
+.+||.+||.|..|.+ +|..|...|. +|...|.+.... ....|... ...+....+.+.+ .++|+||.+.
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~--~V~~sD~~~~~~--~~~~L~~~-----gi~~~~G~~~~~~~~~~d~vV~Sp 88 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGH--TVTGSDANIYPP--MSTQLEQA-----GVTIEEGYLIAHLQPAPDLVVVGN 88 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCCTT--HHHHHHHT-----TCEEEESCCGGGGCSCCSEEEECT
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCC--EEEEECCCCCcH--HHHHHHHC-----CCEEECCCCHHHcCCCCCEEEECC
Confidence 5789999999999987 6777777887 899999864211 12234332 2345554556666 5799999998
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhc-cCCCcEEEEEeCCch------hHHHHHHHhcCCCCCcEEe
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCILLIISNPVD------VLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~-~~p~a~vIv~TNPvd------i~t~~~~k~sg~p~~rViG 317 (488)
+++... ........++++++.+. +.+.+ ..++..+|-+|-... ++.+++ +..|+++.-++|
T Consensus 89 gi~~~~-p~l~~a~~~gi~v~~~~-e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL-~~~G~~~~~~iG 156 (524)
T 3hn7_A 89 AMKRGM-DVIEYMLDTGLRYTSGP-QFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWIL-HYAGIDAGFLIG 156 (524)
T ss_dssp TCCTTS-HHHHHHHHHTCCEEEHH-HHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHH-HHTTCCCEEECS
T ss_pred CcCCCC-HHHHHHHHCCCcEEEHH-HHHHHHHhccCcEEEEECCCCHHHHHHHHHHHH-HHcCCCceEEEC
Confidence 776421 11111123444444332 11222 123445677776654 334444 345676543443
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.27 Score=47.43 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=63.9
Q ss_pred CceEEEEec-ccchHHHHHHHHHcC-CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQG-IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~-l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
+++|.|+|| |.+|..++..|+..+ . +|++++++++.... ..+... ...+... +|+ ++++++|.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~--~~l~~~-----~~~~~~~D~~d~~~l~~~~~~~d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAA--KELRLQ-----GAEVVQGDQDDQVIMELALNGAYA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHH--HHHHHT-----TCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHH--HHHHHC-----CCEEEEecCCCHHHHHHHHhcCCE
Confidence 478999999 999999999999876 5 89999998765432 223221 1122221 222 36889999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||.+++..... ....|+...+.+.+.+.+..... +|+.|
T Consensus 76 vi~~a~~~~~~------~~~~~~~~~~~~~~aa~~~gv~~-iv~~S 114 (299)
T 2wm3_A 76 TFIVTNYWESC------SQEQEVKQGKLLADLARRLGLHY-VVYSG 114 (299)
T ss_dssp EEECCCHHHHT------CHHHHHHHHHHHHHHHHHHTCSE-EEECC
T ss_pred EEEeCCCCccc------cchHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 99987643211 12345556667777766654333 44433
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.72 Score=44.93 Aligned_cols=115 Identities=9% Similarity=0.032 Sum_probs=65.6
Q ss_pred CCCCceEEEEec-cc--chHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---cc------
Q psy12825 174 ESPDQKITVVGA-GQ--VGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---IA------ 241 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~--vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~e------ 241 (488)
.++.+++.|+|| |. +|..++..|+..|. +|++.|++++..+. ..++..... ... ....| .+
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~-~~~~~~~~~---~~~-~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKR-VEPLAEELG---AFV-AGHCDVADAASIDAVF 100 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHH-HHHHHHHHT---CEE-EEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHH-HHHHHHhcC---Cce-EEECCCCCHHHHHHHH
Confidence 345678899998 66 99999999999987 89999998654332 333332210 111 11222 21
Q ss_pred -----ccCCCcEEEEeccccc-----CC--Ccch---HhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRS-----LV--GETR---LQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~-----k~--G~~r---~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|..+|... .+ ..+. ...+..|+.-...+.+.+..+ ...+.||+++-
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 1347899999998653 11 1121 233455554333344443332 23567777764
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.084 Score=51.74 Aligned_cols=113 Identities=16% Similarity=0.041 Sum_probs=67.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHH-HHHHHHhhcCCCCCCCcEEEcCC---c----cccCC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCK-GEMLDLQHGAPFLRSPKIESGSD---I----AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~-g~~~dL~~~~~~~~~~~v~~ttd---~----eal~d 245 (488)
.+.+||.|+|| |.+|..++..|+..|. +|+.+|++.+... .....+... ....+. ..| . +.+++
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~Dl~d~~~~~~~~~~ 84 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIE----GDIQYE-DGDMADACSVQRAVIK 84 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCG----GGEEEE-ECCTTCHHHHHHHHHH
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhcccc----CceEEE-ECCCCCHHHHHHHHHH
Confidence 35689999999 9999999999999886 8999998654311 111122100 011111 223 2 23554
Q ss_pred --CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 --SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 --ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.|+||.+++..... .....+.+..|+.-...+.+.+.+......+|++|
T Consensus 85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S 137 (335)
T 1rpn_A 85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS 137 (335)
T ss_dssp HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 59999998753211 12344556778777777888877765323455555
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.12 Score=52.33 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=44.7
Q ss_pred CCCCceEEEEecccchH-HHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cC--CCcEE
Q psy12825 174 ESPDQKITVVGAGQVGM-ACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SE--GSRIV 249 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~-~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~--dADiV 249 (488)
.|++.||+|||+|.++. .++..+...+. .-+.++|+++++++..+..+. ..+ ..+|+++ +. +.|+|
T Consensus 23 Mm~~irvgiiG~G~~~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~~-------~~~--~~~~~~~ll~~~~vD~V 92 (361)
T 3u3x_A 23 MMDELRFAAVGLNHNHIYGQVNCLLRAGA-RLAGFHEKDDALAAEFSAVYA-------DAR--RIATAEEILEDENIGLI 92 (361)
T ss_dssp ---CCEEEEECCCSTTHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHHHSS-------SCC--EESCHHHHHTCTTCCEE
T ss_pred hccCcEEEEECcCHHHHHHHHHHhhcCCc-EEEEEEcCCHHHHHHHHHHcC-------CCc--ccCCHHHHhcCCCCCEE
Confidence 34678999999999885 45555554443 225688999988776544432 112 3467754 44 58999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
+++.
T Consensus 93 ~I~t 96 (361)
T 3u3x_A 93 VSAA 96 (361)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9985
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.48 Score=45.34 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=67.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c----c---
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A----M--- 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e----a--- 242 (488)
++.++|.|+|| |.+|..++..|+..|. +|++.++ +++..+....++.... ....+ ...|. + .
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~-~~~D~~~~~~v~~~~~~ 100 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG---YKAAV-IKFDAASESDFIEAIQT 100 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEE-EECCTTCHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC---CceEE-EECCCCCHHHHHHHHHH
Confidence 34568889998 9999999999999987 8999998 5555555555554321 11111 12232 1 1
Q ss_pred ----cCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 ----SEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 ----l~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+.|++|..+|...... .+ -...+..|+. +.+.+.+.+.+.. .+.||+++
T Consensus 101 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~is 165 (271)
T 4iin_A 101 IVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVA 165 (271)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEe
Confidence 237899999998754321 11 1233444443 3455555555443 35566665
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.15 Score=49.58 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC-
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG- 245 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d- 245 (488)
..+.++|.|+|| |.+|+.++..|+..|. +|+++|++.+. +. + . ..+... +|. +.+++
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~----l-~-------~~~~~~Dl~d~~~~~~~~~~~ 73 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-KL----P-N-------VEMISLDIMDSQRVKKVISDI 73 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-CC----T-T-------EEEEECCTTCHHHHHHHHHHH
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-cc----c-e-------eeEEECCCCCHHHHHHHHHhc
Confidence 345678999999 9999999999999886 89999987643 11 1 1 111111 122 23454
Q ss_pred -CcEEEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 -SRIVIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 -ADiVIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.|+||.+++.... ......+.+..|+.-...+.+.+.+......+|++|
T Consensus 74 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S 125 (321)
T 2pk3_A 74 KPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG 125 (321)
T ss_dssp CCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 8999999875421 111344566778887777777775553334566555
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.072 Score=56.72 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=48.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|||.|.+|..+|..+..-|. +|+.+|++...... .... ..++ .++ +.+++||+||.
T Consensus 273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~--~V~v~d~~~~~~~~---a~~~------G~~~---~~l~ell~~aDiVi~ 338 (494)
T 3d64_A 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGA--TVWVTEIDPICALQ---AAME------GYRV---VTMEYAADKADIFVT 338 (494)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSCHHHHHH---HHTT------TCEE---CCHHHHTTTCSEEEE
T ss_pred cccCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCChHhHHH---HHHc------CCEe---CCHHHHHhcCCEEEE
Confidence 45678899999999999999998875554 89999998864311 1111 1121 245 56899999999
Q ss_pred ec
Q psy12825 252 TA 253 (488)
Q Consensus 252 ta 253 (488)
+.
T Consensus 339 ~~ 340 (494)
T 3d64_A 339 AT 340 (494)
T ss_dssp CS
T ss_pred CC
Confidence 96
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.64 Score=44.65 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=69.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH-------HHHHHHHHhhcCCCCCCCcEE-EcCCc---c-
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR-------CKGEMLDLQHGAPFLRSPKIE-SGSDI---A- 241 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~-------l~g~~~dL~~~~~~~~~~~v~-~ttd~---e- 241 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++.+. ++....++.... .++. ...|. +
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~ 76 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG-----GQGLALKCDIREEDQ 76 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT-----SEEEEEECCTTCHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC-----CeEEEEeCCCCCHHH
Confidence 45678899998 9999999999999987 89999997653 444444444321 1211 12221 1
Q ss_pred ----------ccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 242 ----------MSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 242 ----------al~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
.+...|++|..+|...... .+ -...+..|+. +.+.+.+.+.+. ..+.||+++-..
T Consensus 77 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~ 151 (274)
T 3e03_A 77 VRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQA-PNPHILTLAPPP 151 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTS-SSCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhc-CCceEEEECChH
Confidence 1347899999998653221 11 1233455554 445555555443 345677776543
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.73 Score=46.34 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=71.6
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH-------HHHHHHHHhhcCCCCCCCcEE-EcCCc---
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR-------CKGEMLDLQHGAPFLRSPKIE-SGSDI--- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~-------l~g~~~dL~~~~~~~~~~~v~-~ttd~--- 240 (488)
..++.++|.|+|| |.+|..++..|+..|. +|+++|++++. ++....++.... .++. ...|.
T Consensus 41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g-----~~~~~~~~Dv~d~ 113 (346)
T 3kvo_A 41 GRLAGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG-----GKALPCIVDVRDE 113 (346)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT-----CEEEEEECCTTCH
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC-----CeEEEEEccCCCH
Confidence 3456678999998 9999999999999987 89999997763 444455554421 1221 12232
Q ss_pred c-----------ccCCCcEEEEecccccCC---Ccc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 241 A-----------MSEGSRIVIITAGVRSLV---GET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 241 e-----------al~dADiVIitag~~~k~---G~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
+ .+.+.|++|..+|..... ..+ -...+..|+. +.+.+.+.+.+. ..+.||+++-+.
T Consensus 114 ~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS~~ 190 (346)
T 3kvo_A 114 QQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKS-KVAHILNISPPL 190 (346)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTC-SSCEEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCCEEEEECCHH
Confidence 1 134899999999864321 112 1234555655 334444444443 346678877554
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.11 Score=50.15 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=47.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh------hHHHHHHHHHhhcCCCCCCCcEEEc--CCc----ccc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE------DRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMS 243 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~------e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal 243 (488)
++||.|+|| |.+|.+++..|+..|. +|+.++++. ++.+ ....+... ...+... +|. +++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~-~~~~l~~~-----~v~~v~~D~~d~~~l~~~~ 75 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQ-LLESFKAS-----GANIVHGSIDDHASLVEAV 75 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHH-HHHHHHTT-----TCEEECCCTTCHHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHH-HHHHHHhC-----CCEEEEeccCCHHHHHHHH
Confidence 578999999 9999999999999885 788998863 2222 11222211 1222211 122 368
Q ss_pred CCCcEEEEeccc
Q psy12825 244 EGSRIVIITAGV 255 (488)
Q Consensus 244 ~dADiVIitag~ 255 (488)
+++|+||.+++.
T Consensus 76 ~~~d~vi~~a~~ 87 (308)
T 1qyc_A 76 KNVDVVISTVGS 87 (308)
T ss_dssp HTCSEEEECCCG
T ss_pred cCCCEEEECCcc
Confidence 899999999864
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.15 Score=53.49 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=52.5
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH-hh---cCCC---------CCCCcEEEcCCc
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL-QH---GAPF---------LRSPKIESGSDI 240 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL-~~---~~~~---------~~~~~v~~ttd~ 240 (488)
..++.||+|||+|.+|..++..+....-..=+.++|+++++++....++ .. .... .....+..++|+
T Consensus 20 ~~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ 99 (446)
T 3upl_A 20 TGKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDN 99 (446)
T ss_dssp TTCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred cCCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCH
Confidence 3567899999999999988776654432234678899999887765544 20 0000 001235567888
Q ss_pred cc-cC--CCcEEEEecc
Q psy12825 241 AM-SE--GSRIVIITAG 254 (488)
Q Consensus 241 ea-l~--dADiVIitag 254 (488)
++ ++ +.|+|+++.+
T Consensus 100 eeLL~d~dIDaVviaTp 116 (446)
T 3upl_A 100 DLILSNPLIDVIIDATG 116 (446)
T ss_dssp HHHHTCTTCCEEEECSC
T ss_pred HHHhcCCCCCEEEEcCC
Confidence 53 44 6999999864
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.065 Score=51.09 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=65.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC---Cc----cccCCCcEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS---DI----AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt---d~----eal~dADiV 249 (488)
++|.|+|| |.+|..++..|+..+. +|+++|++++... .. ...+ ... |. +.++++|+|
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~------~~------~~~~-~~~Dl~d~~~~~~~~~~~d~v 67 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA------EA------HEEI-VACDLADAQAVHDLVKDCDGI 67 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC------CT------TEEE-CCCCTTCHHHHHHHHTTCSEE
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc------CC------CccE-EEccCCCHHHHHHHHcCCCEE
Confidence 58999999 9999999999988875 8999998764210 00 0011 112 22 357899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++.. ......+.+..|+.-...+.+.+.+.... .+|++|
T Consensus 68 i~~a~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S 109 (267)
T 3ay3_A 68 IHLGGVS--VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFAS 109 (267)
T ss_dssp EECCSCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred EECCcCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence 9998754 12233456677888777788877765433 455554
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.054 Score=54.17 Aligned_cols=70 Identities=9% Similarity=0.138 Sum_probs=44.8
Q ss_pred CCceEEEEecccchHHHHHHHHH-cCCCCeEEEEeCChhH-HHHHHHHHhhcCCCCCCCcEEEcCCcccc------CCCc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILT-QGIYSNFCLIDSNEDR-CKGEMLDLQHGAPFLRSPKIESGSDIAMS------EGSR 247 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~-~~l~~el~L~Di~~e~-l~g~~~dL~~~~~~~~~~~v~~ttd~eal------~dAD 247 (488)
++.||+|||+|.+|..++..+.. .....-+.++|+++++ ....+.++. .. ..+.+++++ .+.|
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g--------~~-~~~~~~e~ll~~~~~~~iD 73 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMG--------VT-TTYAGVEGLIKLPEFADID 73 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTT--------CC-EESSHHHHHHHSGGGGGEE
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcC--------CC-cccCCHHHHHhccCCCCCc
Confidence 46799999999999998888765 3322235678998776 343332221 11 123344433 6789
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
+||++.+
T Consensus 74 vV~~atp 80 (312)
T 1nvm_B 74 FVFDATS 80 (312)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999964
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.012 Score=59.18 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=34.0
Q ss_pred CcEEEEe-cchhHHHHHHHHHhh-hhHHHHHHHHH--HHHhhhCCC
Q psy12825 131 QKITVVG-AGQVGMACTYSILTQ-TMARDAVSTVD--RLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg-~g~vg~~~a~~~~~k-~la~eivlid~--~~~~e~~~~ 172 (488)
.||+||| +|+||.++||.|..+ ++++|++++|. +..++.++.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl 46 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDL 46 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHh
Confidence 4899999 899999999999888 89999999883 344554443
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.53 Score=46.03 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I---------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~---------- 240 (488)
.+.+.+.|.|| +.+|..++..|+..|. .|++.|++++.++..+.++.... +....| .
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~g~~~-------~~~~~Dv~~~~~v~~~~~~~ 97 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEIGGGA-------VGIQADSANLAELDRLYEKV 97 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTC-------EEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCe-------EEEEecCCCHHHHHHHHHHH
Confidence 34556667788 8899999999999997 89999999999988777764321 111112 1
Q ss_pred -cccCCCcEEEEecccccC-C--Ccc---hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCc------hhHHHHHHH
Q psy12825 241 -AMSEGSRIVIITAGVRSL-V--GET---RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPV------DVLTYISWK 306 (488)
Q Consensus 241 -eal~dADiVIitag~~~k-~--G~~---r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPv------di~t~~~~k 306 (488)
+.+-.-|++|..+|.... + ..+ -.+.+.-|+.-.-.+++..-.+ ...+.||+++--. +...|.+.|
T Consensus 98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~~~Y~asK 177 (273)
T 4fgs_A 98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAFSVYAASK 177 (273)
T ss_dssp HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTCHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCchHHHHHH
Confidence 235578999999986432 2 122 2234555554333333332222 2245566665222 123344433
Q ss_pred hcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe
Q psy12825 307 LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348 (488)
Q Consensus 307 ~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G 348 (488)
.. + ..+-+.+|..++ |..|++-.+-
T Consensus 178 aa---------v------~~ltr~lA~Ela--~~gIrVN~V~ 202 (273)
T 4fgs_A 178 AA---------L------RSFARNWILDLK--DRGIRINTLS 202 (273)
T ss_dssp HH---------H------HHHHHHHHHHTT--TSCEEEEEEE
T ss_pred HH---------H------HHHHHHHHHHhc--ccCeEEEEEe
Confidence 21 1 235667788774 5566654443
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.35 Score=50.30 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHH-HhhhCCC----CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC
Q psy12825 153 TMARDAVSTVDRL-LSQVAPS----IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP 227 (488)
Q Consensus 153 ~la~eivlid~~~-~~e~~~~----~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~ 227 (488)
.+++.+...+... .++.... .....++|+|||.|.||..+|..+..-|. +|..||+++...
T Consensus 127 ~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~yd~~~~~~------------ 192 (416)
T 3k5p_A 127 MLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGM--TVRYYDTSDKLQ------------ 192 (416)
T ss_dssp HHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECTTCCCC------------
T ss_pred HHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCcchhc------------
Confidence 4666666666442 2222111 34567899999999999999998876676 999999864211
Q ss_pred CCCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe--CCch
Q psy12825 228 FLRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS--NPVD 298 (488)
Q Consensus 228 ~~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T--NPvd 298 (488)
........++ +.++.||+|++...... +...++ | .+.+....|.+++|+++ .++|
T Consensus 193 ---~~~~~~~~sl~ell~~aDvV~lhvPlt~----~T~~li--~-------~~~l~~mk~gailIN~aRG~vvd 250 (416)
T 3k5p_A 193 ---YGNVKPAASLDELLKTSDVVSLHVPSSK----STSKLI--T-------EAKLRKMKKGAFLINNARGSDVD 250 (416)
T ss_dssp ---BTTBEECSSHHHHHHHCSEEEECCCC---------CCB--C-------HHHHHHSCTTEEEEECSCTTSBC
T ss_pred ---ccCcEecCCHHHHHhhCCEEEEeCCCCH----HHhhhc--C-------HHHHhhCCCCcEEEECCCChhhh
Confidence 0011233455 46889999999863211 011111 1 12344456789999997 3455
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.039 Score=53.82 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=62.9
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEecc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITAG 254 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIitag 254 (488)
|++|.|+|| |.+|..++..|+..| ..+.+.+.+....+. +.....+ ....+. ..+. +.++++|+||.+++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~~~~~----~~~~~~~-~~~Dl~-~~~~~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSGNEEF----VNEAARL-VKADLA-ADDIKDYLKGAEEVWHIAA 72 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSCCGGG----SCTTEEE-ECCCTT-TSCCHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCCChhh----cCCCcEE-EECcCC-hHHHHHHhcCCCEEEECCC
Confidence 468999998 999999999998887 234443333322211 0000000 000000 0122 45789999999987
Q ss_pred cccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 255 VRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 255 ~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.+.. ......+.+..|+.-...+.+.+.+.... .+|++|
T Consensus 73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S 113 (313)
T 3ehe_A 73 NPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTS 113 (313)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred CCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeC
Confidence 5422 12234566778888888888888776544 355554
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.54 Score=45.00 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=68.5
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc---c------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESGSDI---A------ 241 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~---e------ 241 (488)
..++.+++.|+|+ |.+|..++..|+..|. +|++.|. +.+.++....++.... ..... ...|. +
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~Dv~~~~~v~~~~ 87 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG---SDAIA-IKADIRQVPEIVKLF 87 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEE-EECCTTSHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CcEEE-EEcCCCCHHHHHHHH
Confidence 3456678888898 8999999999999987 8888776 4555666666665421 11111 22232 1
Q ss_pred -----ccCCCcEEEEecccccCCC---cch---HhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 242 -----MSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 242 -----al~dADiVIitag~~~k~G---~~r---~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
.+...|++|..+|...... .+. ...+..|+.-...+.+.+..+ .+.+.||+++-
T Consensus 88 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 88 DQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 1236799999998753211 122 233455554333344443333 22456776654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.041 Score=53.84 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=48.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh------hHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE------DRCKGEMLDLQHGAPFLRSPKIESG--SDI----AM 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~------e~l~g~~~dL~~~~~~~~~~~v~~t--td~----ea 242 (488)
++++|.|+|| |.+|.+++..|+..+. +|++++++. ++.+. ..++... ...+... +|. ++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~-l~~~~~~-----~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQL-REEFRSM-----GVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHH-HHHHHHT-----TCEEEECCTTCHHHHHHH
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHH-HHHhhcC-----CcEEEEecCCCHHHHHHH
Confidence 3578999998 9999999999999885 899999875 23321 2223221 1222221 122 46
Q ss_pred cCCCcEEEEeccc
Q psy12825 243 SEGSRIVIITAGV 255 (488)
Q Consensus 243 l~dADiVIitag~ 255 (488)
++++|+||.+++.
T Consensus 75 ~~~~d~vi~~a~~ 87 (321)
T 3c1o_A 75 LKQVDIVISALPF 87 (321)
T ss_dssp HTTCSEEEECCCG
T ss_pred HcCCCEEEECCCc
Confidence 8999999999864
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.31 Score=48.18 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=53.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC----------hhHHHHHHHHHhhcCCCCCCCcEE-EcCCc--
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN----------EDRCKGEMLDLQHGAPFLRSPKIE-SGSDI-- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~----------~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~-- 240 (488)
++.+++.|+|+ |.+|..++..|+..|. +|++.|++ .+.++....++.... .++. ...|.
T Consensus 25 l~gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d 97 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG-----GEAVADGSNVAD 97 (322)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT-----CEEEEECCCTTS
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC-----CcEEEEECCCCC
Confidence 44567888898 9999999999999987 89999987 666776666665431 1222 22232
Q ss_pred -c-----------ccCCCcEEEEeccccc
Q psy12825 241 -A-----------MSEGSRIVIITAGVRS 257 (488)
Q Consensus 241 -e-----------al~dADiVIitag~~~ 257 (488)
+ .+...|++|..+|...
T Consensus 98 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~ 126 (322)
T 3qlj_A 98 WDQAAGLIQTAVETFGGLDVLVNNAGIVR 126 (322)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEECCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 1 1237899999998653
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.13 Score=49.90 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=62.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhH---HHHHHHHHhhcCCCCCCCcEEE-cC---C---c-cccC
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDR---CKGEMLDLQHGAPFLRSPKIES-GS---D---I-AMSE 244 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~---l~g~~~dL~~~~~~~~~~~v~~-tt---d---~-eal~ 244 (488)
++|.|+|| |.+|++++..|+..|. +|+.+++ +++. ... ..++... ..++.. .. | . ++++
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~ 73 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSF-LTNLPGA-----SEKLHFFNADLSNPDSFAAAIE 73 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHH-HHTSTTH-----HHHEEECCCCTTCGGGGHHHHT
T ss_pred CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHH-HHhhhcc-----CCceEEEecCCCCHHHHHHHHc
Confidence 68999998 9999999999999886 8888877 5432 111 1111100 001111 11 2 2 3578
Q ss_pred CCcEEEEecccccCCCcc-hHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 245 GSRIVIITAGVRSLVGET-RLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 245 dADiVIitag~~~k~G~~-r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
++|+||.+++........ ..+++..|+.-...+.+...+. ... .+|++|
T Consensus 74 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~S 124 (322)
T 2p4h_X 74 GCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVK-RFIYTS 124 (322)
T ss_dssp TCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEE
T ss_pred CCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEec
Confidence 999999998532101111 2236677888888888887766 233 455554
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.0064 Score=61.61 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=35.2
Q ss_pred CcEEEEe-cchhHHHHHHHHHhhhhHHH-----HHHHHH-----HHHhhhCCC
Q psy12825 131 QKITVVG-AGQVGMACTYSILTQTMARD-----AVSTVD-----RLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg-~g~vg~~~a~~~~~k~la~e-----ivlid~-----~~~~e~~~~ 172 (488)
.||+|+| +|+||.++||.|+.+++++| ++++|. ++.++.++.
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL 56 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMEL 56 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhh
Confidence 5999999 79999999999999999999 998873 455555543
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.21 Score=49.87 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHH-HhhhCC--CCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC
Q psy12825 152 QTMARDAVSTVDRL-LSQVAP--SIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF 228 (488)
Q Consensus 152 k~la~eivlid~~~-~~e~~~--~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~ 228 (488)
-.+++.+...+... .++... ......++|+|||.|.||..++..+...|. +|+.+|++.+... ..+. .
T Consensus 114 L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~--~~~~--g--- 184 (313)
T 2ekl_A 114 IAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGM--KVLAYDILDIREK--AEKI--N--- 184 (313)
T ss_dssp HHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSCCHHH--HHHT--T---
T ss_pred HHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCCcchhH--HHhc--C---
Confidence 45777777776443 222211 145567899999999999999999887776 8999999876432 1111 0
Q ss_pred CCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 229 LRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 229 ~~~~~v~~ttd~-eal~dADiVIita 253 (488)
.. . .++ +.+++||+|+++.
T Consensus 185 ---~~--~-~~l~ell~~aDvVvl~~ 204 (313)
T 2ekl_A 185 ---AK--A-VSLEELLKNSDVISLHV 204 (313)
T ss_dssp ---CE--E-CCHHHHHHHCSEEEECC
T ss_pred ---ce--e-cCHHHHHhhCCEEEEec
Confidence 11 2 255 4588999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 488 | ||||
| d2ldxa1 | 159 | c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu | 4e-48 | |
| d1llda1 | 143 | c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac | 1e-44 | |
| d1i0za1 | 160 | c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho | 2e-44 | |
| d1ldna1 | 148 | c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus | 7e-43 | |
| d2ldxa2 | 172 | d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse | 2e-42 | |
| d1i0za2 | 172 | d.162.1.1 (A:161-332) Lactate dehydrogenase {Human | 2e-42 | |
| d1y6ja1 | 142 | c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi | 6e-42 | |
| d1a5za1 | 140 | c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto | 3e-41 | |
| d1guza1 | 142 | c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium | 1e-40 | |
| d1ojua1 | 142 | c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon | 2e-40 | |
| d1hyha1 | 146 | c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro | 2e-39 | |
| d1ez4a1 | 146 | c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac | 5e-39 | |
| d1ldma2 | 169 | d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi | 7e-39 | |
| d1y6ja2 | 169 | d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost | 3e-38 | |
| d1o6za1 | 142 | c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon | 9e-38 | |
| d1llda2 | 170 | d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid | 2e-37 | |
| d1t2da1 | 150 | c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p | 3e-37 | |
| d1ojua2 | 152 | d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa | 7e-37 | |
| d1pzga1 | 154 | c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas | 2e-36 | |
| d1uxja1 | 142 | c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex | 3e-36 | |
| d1a5za2 | 172 | d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm | 5e-35 | |
| d1llca2 | 172 | d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto | 1e-34 | |
| d1ez4a2 | 171 | d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto | 2e-34 | |
| d1guza2 | 163 | d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro | 2e-34 | |
| d1hyha2 | 163 | d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy | 3e-34 | |
| d1pzga2 | 174 | d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop | 8e-34 | |
| d1uxja2 | 164 | d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro | 5e-33 | |
| d1mlda2 | 169 | d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S | 2e-32 | |
| d1hyea2 | 168 | d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd | 3e-32 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 4e-32 | |
| d2cmda1 | 145 | c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi | 6e-32 | |
| d1t2da2 | 165 | d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar | 7e-32 | |
| d1mlda1 | 144 | c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s | 4e-31 | |
| d1ldna2 | 168 | d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil | 9e-31 | |
| d1o6za2 | 161 | d.162.1.1 (A:163-330) Malate dehydrogenase {Archae | 2e-30 | |
| d5mdha2 | 179 | d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S | 4e-30 | |
| d2cmda2 | 167 | d.162.1.1 (A:146-312) Malate dehydrogenase {Escher | 3e-29 | |
| d1b8pa2 | 171 | d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp | 1e-28 | |
| d7mdha2 | 188 | d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu | 1e-28 | |
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 1e-27 | |
| d1s6ya1 | 169 | c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci | 3e-27 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 6e-27 | |
| d5mdha1 | 154 | c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s | 1e-26 | |
| d1y7ta2 | 173 | d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu | 2e-26 | |
| d1up7a1 | 162 | c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther | 3e-26 | |
| d1u8xx1 | 167 | c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase | 1e-23 | |
| d1obba1 | 171 | c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto | 2e-23 | |
| d1vjta1 | 193 | c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM07 | 2e-05 |
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 161 bits (408), Expect = 4e-48
Identities = 80/159 (50%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 160 STV-DRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE 218
STV ++L+ + P + KITVVG G VGMAC SIL +G+ L+D++ D+ +GE
Sbjct: 1 STVKEQLIQNLVPEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGE 60
Query: 219 MLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLI 278
LDLQHG+ FL +PKI G D +S S++VIITAG R + G+TRL L+ RNV I K ++
Sbjct: 61 ALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIV 120
Query: 279 PKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
P + + SPDC +++++NPVD+LTY+ WK+SGFP RVIG
Sbjct: 121 PGVIQNSPDCKIIVVTNPVDILTYVVWKISGFPVGRVIG 159
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 151 bits (382), Expect = 1e-44
Identities = 53/141 (37%), Positives = 89/141 (63%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+ V+GAG VG ++ +GI L D ++R + E+LD+QHG+ F + I+
Sbjct: 3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD 62
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
D + + +V+ITAG R G++RL+LV V I K ++P + K +P+ I ++I+NPVD
Sbjct: 63 DPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 122
Query: 299 VLTYISWKLSGFPKNRVIGSG 319
+ T+++ KL+G P+N++ GSG
Sbjct: 123 IATHVAQKLTGLPENQIFGSG 143
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 151 bits (382), Expect = 2e-44
Identities = 86/156 (55%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 163 DRLLSQVAPSIES-PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLD 221
++L++ VA + P+ KITVVG GQVGMAC SIL + + L+D ED+ KGEM+D
Sbjct: 5 EKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD 64
Query: 222 LQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKI 281
LQHG+ FL++PKI + D +++ S+IV++TAGVR GE+RL LV RNV +FK +IP+I
Sbjct: 65 LQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQI 124
Query: 282 AKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
K SPDCI++++SNPVD+LTY++WKLSG PK+RVIG
Sbjct: 125 VKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIG 160
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 146 bits (370), Expect = 7e-43
Identities = 55/141 (39%), Positives = 81/141 (57%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
++ V+GAG VG + ++++ QGI LID+NE + G+ +D HG F P
Sbjct: 8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG 67
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
D + +V+I AG GETRL LVD+N+ IF+ ++ + + L+ +NPVD
Sbjct: 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 299 VLTYISWKLSGFPKNRVIGSG 319
+LTY +WK SG P RVIGSG
Sbjct: 128 ILTYATWKFSGLPHERVIGSG 148
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 146 bits (370), Expect = 2e-42
Identities = 93/170 (54%), Positives = 132/170 (77%)
Query: 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGT 377
SG NLDS RFR L+ +KLG++P S HG+++GEHGDSSVP+WSGVNVAGVTLK LNP IGT
Sbjct: 1 SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGT 60
Query: 378 EQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH 437
+++ +++ +H VV YEV+ +KGYTSWA+GLSV ++ ++L N ++H V+TL++G
Sbjct: 61 DKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGF 120
Query: 438 HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
HGI+EEVFLS+PCV+ ++G+T + N+T +E L+KSA T+ +QK L
Sbjct: 121 HGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWNMQKNL 170
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Score = 146 bits (369), Expect = 2e-42
Identities = 105/170 (61%), Positives = 135/170 (79%)
Query: 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGT 377
SG NLDS RFR L+A+KLG+ P S HG+I+GEHGDSSV VWSGVNVAGV+L+ELNP +GT
Sbjct: 1 SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGT 60
Query: 378 EQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH 437
+ D+EN+ +H VV SAYEVIKLKGYT+WA+GLSVA + ++L N ++IH VST+++G
Sbjct: 61 DNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGM 120
Query: 438 HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
+GIE EVFLSLPC++ G+T +INQ L DE +L+KSA T+ IQK L
Sbjct: 121 YGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 170
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 144 bits (364), Expect = 6e-42
Identities = 49/141 (34%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
K+ ++GAG VG + +++ + + LID +++ GE +D+ HG PF+ + +G
Sbjct: 3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD 62
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
+ + ++++TAG GETRL L +NV I K++ I K ++L++SNPVD
Sbjct: 63 YSDV-KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121
Query: 299 VLTYISWKLSGFPKNRVIGSG 319
++TY+ K SG P +VIGSG
Sbjct: 122 IITYMIQKWSGLPVGKVIGSG 142
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 142 bits (358), Expect = 3e-41
Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
KI +VG G+VG + +++L +G LID ++ R +G+ LDL HG PF R I +G
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD 61
Query: 239 DIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298
+ +GS +VI+ AGV GETRLQL+ RN ++ K++ ++K +PD I+++++NPVD
Sbjct: 62 YADL-KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 299 VLTYISWKLSGFPKNRVIGS 318
VLTY K SG +V GS
Sbjct: 121 VLTYFFLKESGMDPRKVFGS 140
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 140 bits (355), Expect = 1e-40
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR-SPKIESG 237
KITV+GAG VG + + + + L+D E +G+ LD+ P K+
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D A + S IVIITAG+ G TR L+ +N I K++ I K S + I++++SNP+
Sbjct: 62 NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 298 DVLTYISWKLSGFPKNRVIG 317
D++T+++W SG PK RVIG
Sbjct: 122 DIMTHVAWVRSGLPKERVIG 141
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 140 bits (353), Expect = 2e-40
Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESG 237
K+ VGAG+VG ++ L L+D ED GE +DL H A + + PKI G
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+D ++ +GS I+++TAG+ G TRL L +N I KD+ KI + +P+ +L+++NP+
Sbjct: 62 ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121
Query: 298 DVLTYISWKLSGFPKNRVIG 317
DV+TYI WK SG P+N V G
Sbjct: 122 DVMTYIMWKESGKPRNEVFG 141
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 137 bits (347), Expect = 2e-39
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
KI ++G G VG A + ++ QG+ ++ ID+NE + K + +D Q L + +
Sbjct: 3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN 62
Query: 239 DIAMSEGSRIVIITAGVRSL----VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294
D A + +VI T G L R + + + + + + +L++IS
Sbjct: 63 DWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122
Query: 295 NPVDVLTYISWKLSGFPKNRVIGS 318
NPVDV+T + ++GFP ++VIG+
Sbjct: 123 NPVDVITALFQHVTGFPAHKVIGT 146
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 136 bits (344), Expect = 5e-39
Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
QK+ +VG G VG + +++ QGI F ++D +DR KG+ LDL+ F +PK
Sbjct: 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFT-APKKIYS 64
Query: 238 SDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + + + +V+ITAG GE+RL LV++N+ I ++ + D I L+ +NPV
Sbjct: 65 GEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124
Query: 298 DVLTYISWKLSGFPKNRVIGSG 319
D+LTY +WK SGFPK RVIGSG
Sbjct: 125 DILTYATWKFSGFPKERVIGSG 146
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Score = 136 bits (344), Expect = 7e-39
Identities = 90/170 (52%), Positives = 129/170 (75%), Gaps = 3/170 (1%)
Query: 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGT 377
SG NLDS RFR L+ ++LG+ S HG++IGEHGDS VWSG+NVA + L L+ GT
Sbjct: 1 SGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLD---GT 57
Query: 378 EQDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGH 437
+D +++ +LH DVV+SAYEVIKLKGYTSWA+GLSVA ++ T++ N ++H VST+++
Sbjct: 58 NKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDF 117
Query: 438 HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
+GI++ VFLSLPCV+ D+G+++I+ L P+E ++L+KSA T+ IQK L
Sbjct: 118 YGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDIQKDL 167
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Score = 134 bits (339), Expect = 3e-38
Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 1/168 (0%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQ 379
T LDS+RFR LL++KLG+ ++VHG+IIGEHGDS +P+WS ++AG + E
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60
Query: 380 DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHG 439
E+ ++ DV + +IK KG T + + +S+ +I TLL N N I V T+I G +G
Sbjct: 61 TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120
Query: 440 IEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
IE+ +SLP ++ GV ++ NLTP+E E LR SA + ++ +
Sbjct: 121 IEDV-AISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEV 167
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 133 bits (335), Expect = 9e-38
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 179 KITVVG-AGQVGMACTYSILTQGIYSNFCLID--SNEDRCKGEMLDLQHGAPFLRSPKIE 235
K++VVG AG VG A Y+I + I +D ED G+ D HG + + ++
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR 61
Query: 236 SGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295
G + GS +V+ITAG+ G+TR+ L N I +D+ + + + D I L SN
Sbjct: 62 QG-GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120
Query: 296 PVDVLTYISWKLSGFPKNRVIG 317
PVD+L ++ + +VIG
Sbjct: 121 PVDLLNRHLYEAGDRSREQVIG 142
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Score = 133 bits (334), Expect = 2e-37
Identities = 60/169 (35%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQ 379
TNLDS R R L+AQ+ G++ ++VH +I GEHGDS VP+W + GV + + P G +
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60
Query: 380 DTE-NFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH 438
+H +V N+AY++I KG T++A+G+S I +L++TN+I VS++++ H
Sbjct: 61 LDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFH 120
Query: 439 GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
GI ++ +S+P ++ GV + IN ++ E L++SA T+ +
Sbjct: 121 GI-SDICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQF 168
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 131 bits (331), Expect = 3e-37
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPK 233
+P KI +VG+G +G I+ + + + L D ++ G+ LD H + K
Sbjct: 1 APKAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 234 IESGSDIAMSEGSRIVIITAGVRSLVGET-----RLQLVDRNVKIFKDLIPKIAKGSPDC 288
+ + G+ +VI+TAG G++ R L+ N KI ++ I K P+
Sbjct: 60 VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119
Query: 289 ILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319
+++++NPVDV+ + + SG PKN++IG G
Sbjct: 120 FIIVVTNPVDVMVQLLHQHSGVPKNKIIGLG 150
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 131 bits (330), Expect = 7e-37
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
G LDS R + L + +IIGEHGDS S + G E
Sbjct: 1 GNQLDSQRLKERLYNAGARNI--RRAWIIGEHGDSMFVAKSLADFDGEVDWEAV------ 52
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH 438
DV A EVIK KG T + +++ + ++ +T +I S ++QG +
Sbjct: 53 ---------ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEY 103
Query: 439 GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
GI E V + +P + NG + + L+ +E EKLR SA + + + L
Sbjct: 104 GI-ENVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRERLEEL 150
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 129 bits (326), Expect = 2e-36
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 171 PSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR 230
P++ +K+ ++G+G +G Y + + ++ L D + +G+ LDL H +
Sbjct: 1 PALVQRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVD 59
Query: 231 SPKIESGSDI--AMSEGSRIVIITAGVRSLVGET-----RLQLVDRNVKIFKDLIPKIAK 283
+ A G+ VI+TAG+ + G+ R L+ N KI +++ I K
Sbjct: 60 TNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKK 119
Query: 284 GSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
P +++++NP+D + + + SG P N + G
Sbjct: 120 YCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICG 153
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 128 bits (323), Expect = 3e-36
Identities = 42/140 (30%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS 238
KI+++GAG VG + + + + + L+D E +G+ LDL +P +G+
Sbjct: 3 KISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61
Query: 239 DIAM-SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297
+ + S ++++T+G G +R L+ N I + I + A SP+ ++++++NP+
Sbjct: 62 NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121
Query: 298 DVLTYISWKLSGFPKNRVIG 317
D +TY++ ++SGFPK RVIG
Sbjct: 122 DAMTYLAAEVSGFPKERVIG 141
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 126 bits (318), Expect = 5e-35
Identities = 58/169 (34%), Positives = 98/169 (57%), Gaps = 2/169 (1%)
Query: 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
GT LD+ R R L+AQ G SP SVH ++IGEHGDS VPVWSG + G+ L+ + + +
Sbjct: 1 GTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQ-VCQK 59
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH 438
D++ +AYE+I+ KG T +A+ L+VA I ++ + ++ +S ++ +
Sbjct: 60 CDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYL 119
Query: 439 GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
G+ +++ +S+P + +GV I+ NL +E E RKSA+ + +
Sbjct: 120 GV-KDLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAINEI 167
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 125 bits (314), Expect = 1e-34
Identities = 60/169 (35%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQ 379
T+LD+ RFR +A+ + + SVH +I+GEHGD+ PVWS N+ GVT+ E E
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP-EI 59
Query: 380 DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHG 439
+ V++ DV ++AYE+IKLKG T + + ++A IS +LN+ N + +S + G +G
Sbjct: 60 KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG 119
Query: 440 IEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGLL 488
I ++++ P V+ NG+ +I+ LT E E ++KSA+ + ++
Sbjct: 120 I-NDLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAF 167
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Score = 125 bits (314), Expect = 2e-34
Identities = 51/166 (30%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQ 379
T+LDS R RV L ++ + P SV +I+GEHGDS +S + ++++ G
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSD 60
Query: 380 DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHG 439
D + +L V N AY++I LKG T + +G ++ IS +L + N + V + G +G
Sbjct: 61 D--DLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYG 118
Query: 440 IEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQK 485
+ ++++ P ++ G+ II L+ DE +K++ SAAT+ ++
Sbjct: 119 L-NDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLN 163
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Score = 124 bits (313), Expect = 2e-34
Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 322 LDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDT 381
LD+ RFR +A +LG+S + ++ ++G HGD+ VPV VAG+ + +L P ++
Sbjct: 4 LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLV 63
Query: 382 ENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHG 439
E N E+++ +G +A SV + +++ + ++ + ++G +G
Sbjct: 64 E-------RTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYG 116
Query: 440 IEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
I ++ F+ +P + NGV I NL + + L+KSA + + K L
Sbjct: 117 I-DKTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDENCKML 163
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Score = 124 bits (312), Expect = 3e-34
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
GT LD+ R + + + L P SV G+ +GEHG+S WS V V G + L +
Sbjct: 1 GTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTL-----AD 55
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH 438
+ + + + V+ KGYTS+ + S I+ ++ + + VS
Sbjct: 56 AGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG 115
Query: 439 GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGLL 488
++LS P ++ +GV +LT DE EKL +S I Q ++
Sbjct: 116 -----MYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRFDEIV 160
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Score = 123 bits (309), Expect = 8e-34
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 1/169 (0%)
Query: 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
LDS RFR +A L +SP V +IG HGD VP+ + V G +++
Sbjct: 1 ACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVT 60
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH 438
+ + H V +G +A S +++ + LN+ ++ S G +
Sbjct: 61 EKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEY 120
Query: 439 GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
G+++ P V+ G+ +I L +E ++ +KS + + K +
Sbjct: 121 GLKDMFIGL-PAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALNKAV 168
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Score = 120 bits (303), Expect = 5e-33
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 322 LDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDT 381
LD+ R+R +A + G+S + V ++G HGD VP+ ++G+ + E Q
Sbjct: 4 LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIV 63
Query: 382 ENFVRLHADVVNSAYEVIKL--KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHG 439
E E++ L G +A + A + +L + ++ V+ + G +G
Sbjct: 64 E-------RTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYG 116
Query: 440 IEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
+ +++ +P ++ GV I+ L +E L SA + L
Sbjct: 117 L-NDIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL 163
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 119 bits (299), Expect = 2e-32
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 16/173 (9%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQ 379
T LD +R +A+ GL P V +IG H ++ T +
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQC-----------TPKVDF 50
Query: 380 DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISH---TLLNNTNKIHAVSTLIQG 436
+ L + + EV+K K A + + +L++ N V
Sbjct: 51 PQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFV 110
Query: 437 HHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAATISQ-IQKGL 487
+ + S P ++ G+ + ++P E + + ++ + I+KG
Sbjct: 111 KSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGE 163
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (298), Expect = 3e-32
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 5/169 (2%)
Query: 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
GT+LDS+RF+V +A+ G+ + V IIGEHGDS VP+ S ++ G+ +++
Sbjct: 2 GTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFERFKELP 61
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH 438
D DV ++I+LKG + + ++ ++ ++NN ++ +S + G
Sbjct: 62 IDEI-----IEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEF 116
Query: 439 GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
+V + +P + +G+ +++ L DE RKSA I + + +
Sbjct: 117 DGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEV 165
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 117 bits (295), Expect = 4e-32
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE-----MLDLQHGAPFLRSP 232
K+T++GA G+VG A + + + LI K E + D G +
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 233 KIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292
+ES ++ + + S +VIIT+GV G +R+ L N KI KIA+ + +
Sbjct: 62 YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV 120
Query: 293 ISNPVDVLTYISWKLSGFPKNRVIG 317
I+NPVDV+TY + S F +N+V G
Sbjct: 121 ITNPVDVMTYKALVDSKFERNQVFG 145
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 117 bits (294), Expect = 6e-32
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 179 KITVVG-AGQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES 236
K+ V+G AG +G A + TQ S L D G +DL H ++
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSG 60
Query: 237 GSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
EG+ +V+I+AGVR G R L + N I K+L+ ++AK P + II+NP
Sbjct: 61 EDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 297 VDVLTYISW----KLSGFPKNRVIG 317
V+ I+ K + KN++ G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 118 bits (295), Expect = 7e-32
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 3/163 (1%)
Query: 322 LDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDT 381
LD+ R + ++QKL + P V+ I+G HG+ V + + V G+ L+E
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISD-- 60
Query: 382 ENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIE 441
+ VN+A E++ L A ++ ++ + L + K+ STL++G +
Sbjct: 61 AELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQY-GH 119
Query: 442 EEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ 484
++F P V+ NGV +I L +E K ++ A +++
Sbjct: 120 SDIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMK 162
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 115 bits (288), Expect = 4e-31
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 8/145 (5%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG 237
K+ V+GA G +G + + + S L D G DL H
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGP 59
Query: 238 SDIAMS-EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296
+ +G +V+I AGV G TR L + N I L A+ PD ++ IISNP
Sbjct: 60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119
Query: 297 VDVLTYISW----KLSGFPKNRVIG 317
V+ I+ K + N++ G
Sbjct: 120 VNSTIPITAEVFKKHGVYNPNKIFG 144
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 114 bits (287), Expect = 9e-31
Identities = 56/169 (33%), Positives = 100/169 (59%), Gaps = 3/169 (1%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQ 379
T LD+ RFR LL + ++P++VH +IIGEHGD+ +PVWS + + +++L + G E
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60
Query: 380 DTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHG 439
+ R+ +V ++AY++I+ KG T + + + +A ++ +L+N N I VS + G +G
Sbjct: 61 QKDLE-RIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYG 119
Query: 440 IEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATI-SQIQKGL 487
+V++ +P V+ NG+ +I L DE + SAAT+ S + +
Sbjct: 120 E-RDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARAF 167
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 113 bits (284), Expect = 2e-30
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
G LDS RFR +L+++ ++V G I+GEHGD+ VPV+S V+V G +
Sbjct: 2 GGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEF-------- 53
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHH 438
+ +L D+ SA +VI+ KG T W VA + +L++T ++ S ++G
Sbjct: 54 -SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEF 112
Query: 439 GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQKGL 487
E+ +P + NGV I+ +L E + + +A +S +
Sbjct: 113 -GHEDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQYDKI 160
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 113 bits (284), Expect = 4e-30
Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 6/168 (3%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
T LD R + +A KLG++ + V II G H + P + V + +
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYE-AVK 59
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSW-ALGLSVASISHTLLNNTNKIHAVSTLIQGH 437
D+ V VIK + +S + ++ + T + VS I
Sbjct: 60 DDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISD 119
Query: 438 H---GIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQ 482
G+ +++ S P + D + + EK+ +A +++
Sbjct: 120 GNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 167
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 110 bits (276), Expect = 3e-29
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 17/173 (9%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQ 379
T LD +R +A+ G P V +IG H ++ + G
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLL------------SQVPGVSF 49
Query: 380 DTENFVRLHADVVNSAYEVIKLK---GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQG 436
+ L + N+ EV++ K G + ++G + A +L+ V
Sbjct: 50 TEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYV 109
Query: 437 HHGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKLRKSAATISQ-IQKGL 487
+ F S P ++ NGV + L+ E L T+ + I G
Sbjct: 110 EGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQ 162
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Score = 109 bits (272), Expect = 1e-28
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 7/171 (4%)
Query: 322 LDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQD 380
LD R +A K G S+ + G H + + + G ++K++ +D
Sbjct: 3 LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62
Query: 381 TENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGI 440
T A + + A ++ I +L K + G +GI
Sbjct: 63 TFLPTVGKRGA---AIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGI 119
Query: 441 EEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQIQ---KGLL 488
E V P + + ++ E++ + + + Q + LL
Sbjct: 120 PEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQNGVQHLL 170
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 109 bits (273), Expect = 1e-28
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
T LD R + LA K G+ + V I G H + VP + + G +KE+ T+
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKR--TK 58
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWAL-GLSVASISHTLLNNTNKIHAVSTLIQ-- 435
E F +I+ G +S A +S+A +L+ T + ST +
Sbjct: 59 WLEEEFTITV---QKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTT 115
Query: 436 -GHHGIEEEVFLSLPCVMADNGVTHII-NQNLTPDEAEKLRKSAATISQ 482
+GI E++ S+PC +G + + + E+++KS A +
Sbjct: 116 GNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 164
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 106 bits (266), Expect = 1e-27
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 10/149 (6%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFCL-------IDSNEDRCKGEMLDLQHGAPFLR 230
I V GA G + + + + ++ + + +G ++L+ L
Sbjct: 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85
Query: 231 SPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCI 289
+ E ++ G R L+D N +IF D + S +
Sbjct: 86 REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145
Query: 290 LLIISNPVDVLTYISWK-LSGFPKNRVIG 317
+L++ NP + I K P
Sbjct: 146 VLVVGNPCNTNALICLKNAPDIPAKNFHA 174
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 105 bits (263), Expect = 3e-27
Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 30/167 (17%)
Query: 179 KITVVGAGQVGMACTYSILTQGI----YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP-- 232
KI +G G L + L+D E + K E++ ++
Sbjct: 3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 62
Query: 233 --KIESGSDIAMSEGSRIVIITAGVRSL--------------------VGETRLQLVDRN 270
+ +G+ V V L G L R
Sbjct: 63 IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 122
Query: 271 VKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
+ + D+I + + PD L+ +NP ++T + + +V+G
Sbjct: 123 IPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY--TKQEKVVG 167
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 104 bits (259), Expect = 6e-27
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 10/148 (6%)
Query: 179 KITVVGA-GQVGMACTYSILT-------QGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR 230
++ V GA GQ+G + + I Q + I +G +++L+ A L
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65
Query: 231 SPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAK-GSPDCI 289
+ + + + ++ G R L+ N KIF + +A+ D
Sbjct: 66 AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125
Query: 290 LLIISNPVDVLTYISWKL-SGFPKNRVI 316
+L++ NP + I++K G
Sbjct: 126 VLVVGNPANTNALIAYKNAPGLNPRNFT 153
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 103 bits (257), Expect = 1e-26
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 10/149 (6%)
Query: 179 KITVVGA-GQVGMACTYSILTQGIYSNFC-----LIDSNEDRCKGEMLDLQH--GAPFLR 230
++ V GA GQ+ + YSI ++ L+D + + ++ A L
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64
Query: 231 SPKIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCI 289
I + + + + I+ + G R L+ NVKIFK + K +
Sbjct: 65 KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124
Query: 290 LLIISNPVDVLTYISWKLS-GFPKNRVIG 317
++++ NP + + K + PK
Sbjct: 125 VIVVGNPANTNCLTASKSAPSIPKENFSC 153
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 103 bits (257), Expect = 2e-26
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 8/166 (4%)
Query: 320 TNLDSMRFRVLLAQKLGLSPESVHGFII-GEHGDSSVPVWSGVNVAGVTLKELNPTIGTE 378
T LD R + LA+K G + + + G H + P V G EL
Sbjct: 2 TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVD----- 56
Query: 379 QDTENFVRLHADVVNSAYEVIKLKGYTSWALGLSVASISHTLLNNTNKIHAVS--TLIQG 436
+ V + A + ++ + + T + VS QG
Sbjct: 57 MEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG 116
Query: 437 HHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATISQ 482
+GI E + S P D + + +++ +A +
Sbjct: 117 EYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLD 162
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Score = 102 bits (254), Expect = 3e-26
Identities = 19/162 (11%), Positives = 42/162 (25%), Gaps = 26/162 (16%)
Query: 179 KITVVGAGQVGMACTYSILTQGIY----SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKI 234
+I V+G G L D +E++ + ++D R +
Sbjct: 2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEK-QKIVVDFVKRLVKDRFKVL 60
Query: 235 ESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDL----------------- 277
S + ++ VI L G + + +
Sbjct: 61 ISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIV 120
Query: 278 --IPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
+ + + ++ +NP +T + IG
Sbjct: 121 EEYVDTVRKTSNATIVNFTNPSGHITEFVRNY--LEYEKFIG 160
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Score = 95.1 bits (236), Expect = 1e-23
Identities = 20/164 (12%), Positives = 46/164 (28%), Gaps = 28/164 (17%)
Query: 179 KITVVGAGQVGMACTYSILTQGIY----SNFCLIDSNEDRCKG--EMLDLQHGAPFLRSP 232
I + G G +L + L D++++R D+
Sbjct: 5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIE 64
Query: 233 KIESGSDIAMSEGSRIVIITAGVRSLVGETRLQLVDRN--------------------VK 272
+ V+ V + + +
Sbjct: 65 FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIG 124
Query: 273 IFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI 316
+++ + K SPD +L SNP ++ + +L P ++++
Sbjct: 125 GVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL--RPNSKIL 166
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Score = 94.4 bits (234), Expect = 2e-23
Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 35/174 (20%)
Query: 176 PDQKITVVGAGQVGMACTY----SILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRS 231
P KI ++GAG + S L+D +E+R + + + +
Sbjct: 1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 60
Query: 232 P-KIESGSDI-------------------AMSEGSRIVIITAGVRSLVGETRLQLV---- 267
K E ++ E R + G + +V
Sbjct: 61 DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 120
Query: 268 ----DRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317
+K F D+ KI K SP L +NP+ T + + + +G
Sbjct: 121 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVPI---KAVG 171
|
| >d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 45/181 (24%)
Query: 179 KITVVGAGQVGMA------CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSP 232
KI+++GAG V A + ++ ++D +E R + + L SP
Sbjct: 4 KISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNSP 63
Query: 233 KIESGS-----DIAMSEGSRIVIITAGVRSLVGETRLQLVDR------------------ 269
+ I ++ R ++
Sbjct: 64 VKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELN 123
Query: 270 -------------NVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI 316
++K+ ++ K+ K +P L+ +NPV +T + + ++
Sbjct: 124 MVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEIT---QAVRRWTGANIV 180
Query: 317 G 317
G
Sbjct: 181 G 181
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 488 | |||
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d1i0za2 | 172 | Lactate dehydrogenase {Human (Homo sapiens), heart | 100.0 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 100.0 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 100.0 | |
| d1llda2 | 170 | Lactate dehydrogenase {Bifidobacterium longum, str | 100.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 100.0 | |
| d1y6ja2 | 169 | Lactate dehydrogenase {Clostridium thermocellum [T | 100.0 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 99.98 | |
| d2ldxa2 | 172 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.98 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.98 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 99.98 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.98 | |
| d1ldma2 | 169 | Lactate dehydrogenase {Dogfish (Squalus acanthias) | 99.98 | |
| d1pzga2 | 174 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.97 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d1a5za2 | 172 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 99.97 | |
| d1ojua2 | 152 | Lactate dehydrogenase {Archaeon Archaeoglobus fulg | 99.97 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1ez4a2 | 171 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 99.97 | |
| d7mdha2 | 188 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 99.97 | |
| d1guza2 | 163 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 99.97 | |
| d1uxja2 | 164 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.97 | |
| d1hyea2 | 168 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.97 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.97 | |
| d1t2da2 | 165 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.97 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 99.97 | |
| d1ldna2 | 168 | Lactate dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d1hyha2 | 163 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 99.97 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 99.97 | |
| d5mdha2 | 179 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.97 | |
| d1llca2 | 172 | Lactate dehydrogenase {Lactobacillus casei [TaxId: | 99.96 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 99.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 99.96 | |
| d1o6za2 | 161 | Malate dehydrogenase {Archaeon Haloarcula marismor | 99.96 | |
| d1y7ta2 | 173 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 99.96 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.96 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.95 | |
| d1b8pa2 | 171 | Malate dehydrogenase {Aquaspirillum arcticum [TaxI | 99.95 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 99.94 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.93 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 99.93 | |
| d1mlda2 | 169 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 99.93 | |
| d2cmda2 | 167 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 99.92 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.92 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.92 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.9 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 99.9 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.58 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.36 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.34 | |
| d1up7a2 | 253 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 99.24 | |
| d1u8xx2 | 276 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 99.17 | |
| d1s6ya2 | 270 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 99.14 | |
| d1obba2 | 308 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.98 | |
| d1vjta2 | 278 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.83 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.69 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.64 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.59 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.54 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.53 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.53 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 98.32 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 98.22 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.08 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.06 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.05 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.05 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.05 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.04 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.02 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.0 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.92 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.88 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.88 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.84 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.83 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.8 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.74 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.69 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.59 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 97.56 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.52 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.37 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.29 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.28 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.27 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.27 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.25 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.19 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.1 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.07 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.99 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.97 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.91 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.85 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.85 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.82 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.74 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.71 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.65 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.61 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.57 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.42 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 96.34 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.33 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.31 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.18 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.16 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.15 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 96.14 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 96.13 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.02 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.97 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.93 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.92 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.89 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 95.8 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.79 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 95.75 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 95.74 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.71 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.71 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.68 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 95.63 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.62 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.61 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.61 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.58 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.47 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.42 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.4 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.39 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 95.35 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.3 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.28 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.27 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.25 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 95.2 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.17 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.16 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.14 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.1 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 95.09 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 95.09 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.03 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.94 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.89 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 94.88 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.88 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.87 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.85 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 94.81 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.81 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 94.8 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.78 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 94.74 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.68 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 94.66 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.63 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.59 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.58 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.51 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.51 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 94.49 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.48 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.47 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.45 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 94.33 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.32 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.3 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.27 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 94.27 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.26 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.23 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.23 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.21 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.18 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.17 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.16 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 93.93 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.91 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.76 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 93.55 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.47 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 93.41 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 93.38 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.34 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.34 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.31 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.27 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.14 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 93.13 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 93.06 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 93.02 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.01 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 92.97 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 92.92 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 92.88 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 92.84 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.78 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 92.75 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.73 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.7 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.66 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.61 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.52 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 92.46 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 92.45 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.41 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 92.41 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.31 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.3 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.15 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 92.07 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 92.06 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 92.0 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.99 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.94 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.85 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 91.75 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.73 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 91.62 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 91.62 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.56 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.54 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.47 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 91.3 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 91.29 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.18 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 91.13 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 90.81 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 90.7 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 90.63 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.62 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 90.6 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 90.5 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.38 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 90.31 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 90.27 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 90.13 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 90.03 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.89 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 89.78 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 89.77 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 89.6 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 89.44 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 89.34 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 89.32 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 89.3 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 89.3 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.27 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 89.24 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.09 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.09 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 89.07 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.05 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 89.0 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 88.96 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.95 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 88.93 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 88.9 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 88.85 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 88.78 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 88.54 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 88.4 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 88.3 | |
| d1rq2a1 | 198 | Cell-division protein FtsZ {Mycobacterium tubercul | 88.23 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 88.05 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 88.04 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 88.03 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.97 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 87.96 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 87.88 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 87.82 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.81 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 87.63 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 87.59 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 87.51 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 87.44 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 87.42 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 87.16 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 87.0 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 86.89 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 86.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 86.56 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 86.45 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 86.41 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 86.39 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 86.14 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 86.11 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 86.03 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 85.89 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 85.73 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 85.54 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 85.54 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 85.28 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.19 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 85.18 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 84.97 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 84.91 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 84.85 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 84.82 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 84.39 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 84.38 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 84.36 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 84.27 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 84.19 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 83.9 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 83.83 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 83.81 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 83.44 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 83.23 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 83.17 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 83.07 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 83.03 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 82.95 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 82.56 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 82.51 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 82.5 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 82.41 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.37 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 82.34 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.33 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 81.87 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 81.83 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.69 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 81.58 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 81.44 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 81.41 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 81.33 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 81.29 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 81.19 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 81.12 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 81.07 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 80.85 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 80.63 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 80.15 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.02 |
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=3.4e-34 Score=257.18 Aligned_cols=143 Identities=37% Similarity=0.702 Sum_probs=137.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
+.||+|||+|.||+++|+.++.+++.+||+|+|++++++++.++||+|...+.....+..+++|++++|||+||+++|.+
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~ 80 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 80 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence 57999999999999999999999999999999999999999999999987666677787788999999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeec
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~g 319 (488)
+++|++|.|++..|+++++++++.|.+++|++++|++|||+|+||+++++++|||++||||+|
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~G 143 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGSG 143 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEECT
T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999986
|
| >d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=100.00 E-value=1.1e-33 Score=260.17 Aligned_cols=170 Identities=62% Similarity=1.020 Sum_probs=158.0
Q ss_pred ecCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHH
Q psy12825 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYE 397 (488)
Q Consensus 318 ~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~e 397 (488)
+||.||++|++++||+++|++|++|+++||||||++++|+||+++++|.|+.++.+......+++.++++.+.++.++.+
T Consensus 1 ~GT~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (172)
T d1i0za2 1 SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYE 80 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBCCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHceEEEEccCCCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEE
Confidence 48999999999999999999999999999999999999999999999999998776543334445567888889999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 398 VIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 398 Ii~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
++..++++.|++|.++++++++++.+.+.++|++++++|+||+++++|||+||+++++|+.++.+++|+++|+++|++|+
T Consensus 81 ~~~~~~~s~~a~a~~~~~~~~~~~~~~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l~L~~~E~~~l~~Sa 160 (172)
T d1i0za2 81 VIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSA 160 (172)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHHHHHhcCCCcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy12825 478 ATISQIQKGL 487 (488)
Q Consensus 478 ~~i~~~~~~~ 487 (488)
++|+++++++
T Consensus 161 ~~l~~~~~~l 170 (172)
T d1i0za2 161 DTLWDIQKDL 170 (172)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHh
Confidence 9999998875
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.1e-33 Score=255.26 Aligned_cols=145 Identities=38% Similarity=0.715 Sum_probs=136.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
....||+|||||.||+++++.|+++++.+||+|+|++++++++.++||+|...+........++||++++|||+||+++|
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 45679999999999999999999999999999999999999999999999876554444456789999999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeec
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~g 319 (488)
.++++|++|.|++.+|+++++++++.|.++||++|+|++|||+|++|+++++++|||++||||+|
T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~G 148 (148)
T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSG 148 (148)
T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEECT
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.2e-33 Score=249.76 Aligned_cols=141 Identities=40% Similarity=0.679 Sum_probs=134.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||+|||||.+|+++|+.++.+++.+||+|+|++++++++.++||+|...+ ....++..++||++++|||+||+++|.+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~ 80 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence 799999999999999999999999999999999999999999999998643 3456788888999999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
+++|++|.+++.+|+++++++++.|.++||+++++++|||+|++|+++++++|||++||||+
T Consensus 81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~ 142 (142)
T d1ojua1 81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGM 142 (142)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence 99999999999999999999999999999999999999999999999999999999999996
|
| >d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=100.00 E-value=1.4e-32 Score=252.82 Aligned_cols=167 Identities=37% Similarity=0.682 Sum_probs=155.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCC-CCCChHHHHHHHHHHhhhHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIG-TEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~-~~~~~~~~~el~~~v~~~~~eI 398 (488)
|.||++|++.+||+++|+++++|+++||||||++++|+||+++++|.|+.++..... ..++.+.++++.+.++.++++|
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~i 80 (170)
T d1llda2 1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKI 80 (170)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEECCEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhHH
Confidence 679999999999999999999999999999999999999999999999998765322 1355677788999999999999
Q ss_pred HHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 399 IKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 399 i~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
++.||+++|++|.++++++++++.+...+++++++++|+||.+ ++|||+||+++++|++++++++|+++|+++|++|++
T Consensus 81 ~~~kg~t~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~-~i~~s~P~~lg~~Gv~~i~~l~L~~~E~~~l~~sa~ 159 (170)
T d1llda2 81 INGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGIS-DICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAE 159 (170)
T ss_dssp HTSCCSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECSSBTTBC-SSEEEEEEEEETTEEECCSCCCCCHHHHHHHHHHHH
T ss_pred HhhhccchhhhHHHHHHHHHHHHcCCCceeeeeccccCccCCC-CeeEeeccEEcCCeeEEEecCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999975 899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++.++.|
T Consensus 160 ~lk~~~~~l 168 (170)
T d1llda2 160 TLKETAAQF 168 (170)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-32 Score=246.48 Aligned_cols=140 Identities=43% Similarity=0.746 Sum_probs=131.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
|||+|||||.+|+++++.++.+++.+||+|+|++++++++.++|+.|...+.....+ .++||++++|||+||+++|.++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~-~~~~~~~~~~adivvitag~~~ 79 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANI-YAGDYADLKGSDVVIVAAGVPQ 79 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEE-EECCGGGGTTCSEEEECCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccc-cCCcHHHhcCCCEEEEeccccc
Confidence 699999999999999999999999999999999999999999999998654444444 4678999999999999999999
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
++|++|.|++.+|+++++++++.|.++||++|++++|||+|+||+++++.+|||++||||+
T Consensus 80 ~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~~k~sg~p~~rViGt 140 (140)
T d1a5za1 80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS 140 (140)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHHHCcCccceeCc
Confidence 9999999999999999999999999999999999999999999999999999999999985
|
| >d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=6e-33 Score=255.17 Aligned_cols=167 Identities=41% Similarity=0.675 Sum_probs=149.8
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
|.||++|++++||+++|++|++|+++||||||++++|+||+++++|.|+.++.+.....++.+.++++.++++..+++++
T Consensus 1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (169)
T d1y6ja2 1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATII 80 (169)
T ss_dssp THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHceEEEEccCCCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Confidence 67999999999999999999999999999999999999999999999999887543223445566788889999999999
Q ss_pred HhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 400 KLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 400 ~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
..++++.|++|.++++++++++.+++.++|++++.+|+||++ ++|||+||+++++|++++++++|+++|+++|++|++.
T Consensus 81 ~~~~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~~g~yg~~-~i~~s~Pv~lg~~Gv~~i~~l~Ls~~E~~~l~~s~~~ 159 (169)
T d1y6ja2 81 KNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIE-DVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQ 159 (169)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHTCCCEECCEEEECSBTTBC-SEEEECCEEEETTEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHhccCCCCceeeeeeeccccCCc-ccceeeeeEEcCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy12825 480 ISQIQKGL 487 (488)
Q Consensus 480 i~~~~~~~ 487 (488)
|++.++.+
T Consensus 160 lk~~~~~v 167 (169)
T d1y6ja2 160 VKKVLNEV 167 (169)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99988764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=99.98 E-value=5.7e-33 Score=248.94 Aligned_cols=142 Identities=35% Similarity=0.620 Sum_probs=122.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
++||+|||||.+|+++++.++.+++.+||+|+|++++++++.++||+|...+..... ..++||++++|||+||+++|.+
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~-~~~~~~~~~~~adivvitag~~ 79 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMS-LYAGDYSDVKDCDVIVVTAGAN 79 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEE-EC--CGGGGTTCSEEEECCCC-
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCee-EeeCcHHHhCCCceEEEecccc
Confidence 369999999999999999999999999999999999999999999999865443333 3456899999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeec
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~g 319 (488)
+++|++|.+++.+|+++++++++.|.+++|++++|++|||+|+||+++++++|||++||||+|
T Consensus 80 ~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~G 142 (142)
T d1y6ja1 80 RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSG 142 (142)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECT
T ss_pred cCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHHHHHHCCCccceecCC
Confidence 999999999999999999999999999999999999999999999999999999999999986
|
| >d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=2.5e-32 Score=250.65 Aligned_cols=170 Identities=55% Similarity=1.015 Sum_probs=154.3
Q ss_pred ecCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHH
Q psy12825 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYE 397 (488)
Q Consensus 318 ~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~e 397 (488)
+||.||++|+++++|+++|++|++|+++||||||++++|+||+++++|.|+.++.+........+..+++....+..+.+
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYE 80 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTSSCCCEEECSSSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceee
Confidence 48999999999999999999999999999999999999999999999999988765432222233445677778888899
Q ss_pred HHHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 398 VIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 398 Ii~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
+...++++.|+.|.++..++.+++.+.+.+++++++.+|+||+++++|||+||+++++|++++++++|+++|+++|++|+
T Consensus 81 ~~~~k~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l~L~~~E~~~l~~s~ 160 (172)
T d2ldxa2 81 VLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSA 160 (172)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECCCCCHHHHHHHHHHH
T ss_pred hhhcccchhHHHHHHHhHHHHhhcCCCccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy12825 478 ATISQIQKGL 487 (488)
Q Consensus 478 ~~i~~~~~~~ 487 (488)
+.|+++++++
T Consensus 161 ~~lk~~~k~l 170 (172)
T d2ldxa2 161 DTLWNMQKNL 170 (172)
T ss_dssp HHHHHHTSCS
T ss_pred HHHHHHHHhc
Confidence 9999988764
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.98 E-value=1.3e-32 Score=247.61 Aligned_cols=142 Identities=27% Similarity=0.445 Sum_probs=125.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
.+||+|||||.+|+++++.|+.+++.+||+|+|++++++++.++||+|...+........++||++++|||+||+++|.+
T Consensus 1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~ 80 (146)
T d1hyha1 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI 80 (146)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence 37999999999999999999999999999999999999999999999986544333344578999999999999999987
Q ss_pred c----CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 257 S----LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 257 ~----k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
+ ++|++|.+++..|+++++++++.|.++||++|+|++|||+|+||+++++++|||++||||+
T Consensus 81 ~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~~k~sg~p~~rViGt 146 (146)
T d1hyha1 81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGT 146 (146)
T ss_dssp GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred ccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHHHHHhCCCccceeCc
Confidence 7 6889999999999999999999999999999999999999999999999999999999985
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=99.98 E-value=3.1e-32 Score=248.49 Aligned_cols=145 Identities=57% Similarity=1.000 Sum_probs=136.9
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
...+..||+|||+|.||+++++.|+.+++.+||+|+|++++++++.++||+|...+.....+..++||++++|||+||++
T Consensus 16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVit 95 (160)
T d1i0za1 16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVT 95 (160)
T ss_dssp CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEEC
T ss_pred ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEe
Confidence 44567899999999999999999999999999999999999999999999997655556667778899999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+|.++++|++|.+++..|+++++++++.|.+++|++++|++|||+|+||+++++.+|||++||||
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~~k~sglp~~rViG 160 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIG 160 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.98 E-value=1.7e-32 Score=246.89 Aligned_cols=143 Identities=41% Similarity=0.751 Sum_probs=124.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
+.+||+|||+|.+|+++++.|+++++.+||+|+|++++++++.++|++|...+. ......++||++++|||+||+++|.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~-~~~~~~~~d~~~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFT-APKKIYSGEYSDCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGS-CCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccccc-CCceEeeccHHHhccccEEEEeccc
Confidence 567999999999999999999999999999999999999999999999976433 3445567899999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeec
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~g 319 (488)
++++|++|.+++..|+++++++++.|.++||++++|++|||+|++++++++.+|||++||||+|
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~G 146 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSG 146 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECT
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
|
| >d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Dogfish (Squalus acanthias) [TaxId: 7797]
Probab=99.98 E-value=3.2e-32 Score=249.55 Aligned_cols=167 Identities=53% Similarity=0.935 Sum_probs=151.1
Q ss_pred ecCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHH
Q psy12825 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYE 397 (488)
Q Consensus 318 ~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~e 397 (488)
+||.||++|++++||++||++|++|+++||||||++++|+||++.++|.|+.++.... .+.+.+.++.+..+.++.+
T Consensus 1 sGT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 77 (169)
T d1ldma2 1 SGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTN---KDKQDWKKLHKDVVDSAYE 77 (169)
T ss_dssp CTTHHHHHHHHHHHHHHHTSCGGGCBCCBCBCSSTTCCBCGGGCEETTEESHHHHSST---TTTTTTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCccchhhhhhcccCCcchHHhhccc---chhhhcceeEEEecCceEE
Confidence 4899999999999999999999999999999999999999999999999998865321 1222334555667777888
Q ss_pred HHHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 398 VIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 398 Ii~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
+...++++.|++|.++++++++++.+++.+++++++.+|+||+++++|||+||++|++|++++++++|+++|+++|++|+
T Consensus 78 ~~~~~~s~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l~L~~~E~~~l~~s~ 157 (169)
T d1ldma2 78 VIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSA 157 (169)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred EeccccchhhHHHHHHhhhhheecCCCCceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy12825 478 ATISQIQKGL 487 (488)
Q Consensus 478 ~~i~~~~~~~ 487 (488)
+.|+++++++
T Consensus 158 ~~l~~~~k~l 167 (169)
T d1ldma2 158 TTLWDIQKDL 167 (169)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999998876
|
| >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.97 E-value=4.8e-32 Score=250.12 Aligned_cols=166 Identities=25% Similarity=0.450 Sum_probs=146.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 319 gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
||+||++|++++||+++|++|++|+++||||||++++|+||+++++|.|+.++.+.. ......+.++....+.++..+
T Consensus 1 ~c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~S~~~i~g~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~~~ 78 (174)
T d1pzga2 1 ACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDG--VVTEKQLEEIAEHTKVSGGEI 78 (174)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhCcCHHHcEEEEEccCCCccccceeeeeECCEechhhcccc--chhhhhhhhhhheeeccceeE
Confidence 799999999999999999999999999999999999999999999999998865431 123444555555556666555
Q ss_pred H--HhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHH
Q psy12825 399 I--KLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKS 476 (488)
Q Consensus 399 i--~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~s 476 (488)
+ ..+|++.|++|.++++++++++++++.+++++++.+|+||++ ++|||+||++|++|++++++++|+++|+++|++|
T Consensus 79 ~~~~~~gst~~~~a~a~~~~~~~i~~~~~~~~~~s~~~~~~yGi~-~v~~s~Pv~ig~~Gi~~v~~l~l~~~E~~~l~~s 157 (174)
T d1pzga2 79 VRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK-DMFIGLPAVIGGAGIERVIELELNEEEKKQFQKS 157 (174)
T ss_dssp HHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHH
T ss_pred eeeecccchhhhhHHHHHHHHHhhcccCCceEEeeeccccccCCC-CceeeeeeEEcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 4 467899999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy12825 477 AATISQIQKGL 487 (488)
Q Consensus 477 a~~i~~~~~~~ 487 (488)
++.|+++++.+
T Consensus 158 ~~~l~~~~~~v 168 (174)
T d1pzga2 158 VDDVMALNKAV 168 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=3.7e-32 Score=243.35 Aligned_cols=141 Identities=38% Similarity=0.597 Sum_probs=133.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||+|||||.+|+++++.|+.+++.+||+|+|++++++++...|++|... +....++..++|+++++|||+||+++|.|
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 69999999999999999999999999999999999999999999988653 23466777788999999999999999999
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
+++|++|.+++.+|+++++++++.|.++||++|++++|||+|++++++++.+|||++||||+
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~~~~sg~p~~rviG~ 142 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM 142 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999996
|
| >d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.4e-31 Score=246.20 Aligned_cols=167 Identities=35% Similarity=0.645 Sum_probs=154.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 319 gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
||.||++|++++||+++|++|.+|+++||||||++++|+||+++++|.|+.++.... ..++++.++++.+.++.+++++
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i 79 (172)
T d1a5za2 1 GTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVC-QKCDSKILENFAEKTKRAAYEI 79 (172)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHTTS-SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHCcCHHHeEEEEEecCCCCcccchhhcccCCcchhhhhhcc-ccccHHHhhhhHHHHhccceeE
Confidence 799999999999999999999999999999999999999999999999998875421 2355677788899999999999
Q ss_pred HHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 399 IKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 399 i~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
+..++++.|+.|.++++++.+++.+.+.+++++++.+|+|+.+ ++|||+||++|++|++++++++|+++|+++|++|++
T Consensus 80 ~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~v~~s~P~~lg~~Gv~~v~~l~Ls~~E~~~l~~sa~ 158 (172)
T d1a5za2 80 IERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVK-DLCISVPVTLGKHGVERILELNLNEEELEAFRKSAS 158 (172)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEESSBTTBC-SEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHHHHHHHHhhcccceeeecccccccccC-CeeEeeeEEEcCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999874 899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++.++.+
T Consensus 159 ~lk~~i~~l 167 (172)
T d1a5za2 159 ILKNAINEI 167 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
|
| >d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=7.6e-32 Score=243.75 Aligned_cols=149 Identities=32% Similarity=0.468 Sum_probs=136.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCc-eeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHH
Q psy12825 319 GTNLDSMRFRVLLAQKLGLSPESV-HGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYE 397 (488)
Q Consensus 319 gt~lds~R~~~~lA~~Lgv~p~~V-~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~e 397 (488)
||.||++||++.|++.. +.++ +++|+|+||++++|+||.+.++|.+ +++++.+.+++++++
T Consensus 1 Gt~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGds~vp~~S~~~i~g~~---------------~~~~i~~~v~~~g~e 62 (152)
T d1ojua2 1 GNQLDSQRLKERLYNAG---ARNIRRAWIIGEHGDSMFVAKSLADFDGEV---------------DWEAVENDVRFVAAE 62 (152)
T ss_dssp SHHHHHHHHHHHHHHTT---CBSCCCCCEEBCSSTTCEECGGGCCCBSCC---------------CHHHHHHHHHTTHHH
T ss_pred CCccHHHHHHHHHHccC---CCCcceeEEEecCCCccccccccccccCcc---------------chhHhHHHHHHHHHH
Confidence 78999999999998765 4455 8999999999999999999987753 245788899999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 398 VIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 398 Ii~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
|++.||+++|++|+++++|+++|++|++.++|+|++.+|+||+. |+|+|+||++|++|++ +++++|+++|+++|++|+
T Consensus 63 Ii~~kG~t~~gia~a~~~iv~aIl~d~~~v~pvs~~l~geyG~~-dv~lsvP~vig~~Gve-i~~l~L~~~E~~~l~~Sa 140 (152)
T d1ojua2 63 VIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VADIKLSDEEIEKLRNSA 140 (152)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-ECCCCCCHHHHHHHHHHH
T ss_pred hhhhccceeccHHHHHHHHHHHHHhcCCCceeeeEEeccccCCC-CEEEEeEEEECCCceE-EEcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 8999999999999985 888999999999999999
Q ss_pred HHHHHHHHhh
Q psy12825 478 ATISQIQKGL 487 (488)
Q Consensus 478 ~~i~~~~~~~ 487 (488)
+.|++.++.+
T Consensus 141 ~~ik~~i~~l 150 (152)
T d1ojua2 141 KILRERLEEL 150 (152)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHc
Confidence 9999998865
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.6e-32 Score=247.22 Aligned_cols=145 Identities=52% Similarity=0.932 Sum_probs=137.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
..+++.||+|||||.+|+++|+.|+.+++.+||+|+|++++++++.++||+|...+.....+..++||++++|||+||++
T Consensus 15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvit 94 (159)
T d2ldxa1 15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIIT 94 (159)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEEC
T ss_pred ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEe
Confidence 56777899999999999999999999999999999999999999999999998765556677777899999999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
+|.++++|++|.|++..|+++++++++.|.+++|+++++++|||+|+|++++++.+|||++||||
T Consensus 95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~~k~sg~p~~rV~G 159 (159)
T d2ldxa1 95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVVWKISGFPVGRVIG 159 (159)
T ss_dssp CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHHHHHHCSCTTTEEE
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHHHHHHCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
|
| >d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=99.97 E-value=8.9e-32 Score=247.37 Aligned_cols=165 Identities=30% Similarity=0.600 Sum_probs=153.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
|.||++|++.+||+++|++|++|+++||||||++++|+||+++++|.|+.++.+.. .+..+++.++.+.++.++++++
T Consensus 1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~ 78 (171)
T d1ez4a2 1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ--GVSDDDLAKLEDGVRNKAYDII 78 (171)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEECCEESSSSSSCEECGGGCEETTEEHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCCcccccccccccCCccceeecccc--cccchhhhhheeehhhhhHHHH
Confidence 67999999999999999999999999999999999999999999999998765432 2456778889999999999999
Q ss_pred HhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 400 KLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 400 ~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
..+|++.|++|.++.+++++++++.+.+++++++++|+||+ +++|||+||+++++|++++++++|+++|+++|++|++.
T Consensus 79 ~~k~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~-~~~~~S~Pv~lg~~Gv~~v~~l~Ls~~E~~~l~~s~~~ 157 (171)
T d1ez4a2 79 NLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL-NDIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAAT 157 (171)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred HhhhhHhHHHHHHHHHHHHHHhccCCceEEEEEeeccccCc-cceeeeEEEEEcCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy12825 480 ISQIQKGL 487 (488)
Q Consensus 480 i~~~~~~~ 487 (488)
|++.++..
T Consensus 158 l~~~i~~~ 165 (171)
T d1ez4a2 158 LKKVLNDG 165 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
|
| >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=99.97 E-value=1.7e-31 Score=249.97 Aligned_cols=161 Identities=24% Similarity=0.297 Sum_probs=143.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
|.||++|++.+||+++|++|++|++ +||||||++|||+||+++++|.|+.++.+. +...++++.+.++++++++
T Consensus 1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v~g~~l~~~~~~-----~~~~~~~~~~~v~~~~~~i 75 (188)
T d7mdha2 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKR-----TKWLEEEFTITVQKRGGAL 75 (188)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCC-----HHHHHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEeeccchhhcccc-----hhhhHHHHHHHHhhhHHHH
Confidence 6799999999999999999999986 688999999999999999999999887642 1233478999999999999
Q ss_pred HHhcCCcch-hhHHHHHHHHHHHHcCC--CcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHHHH
Q psy12825 399 IKLKGYTSW-ALGLSVASISHTLLNNT--NKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAEKL 473 (488)
Q Consensus 399 i~~kg~t~~-s~A~a~~~ii~aIl~~~--~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~~L 473 (488)
++.||.++| ++|.++++++++|+++. ..+++++++++|. ||+++|+|||+||++|++|+++++. ++|+++|+++|
T Consensus 76 i~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l 155 (188)
T d7mdha2 76 IQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERI 155 (188)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHH
T ss_pred HHhhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHH
Confidence 999987776 48999999999999876 4688899999996 9999999999999999999999975 99999999999
Q ss_pred HHHHHHHHHHHH
Q psy12825 474 RKSAATISQIQK 485 (488)
Q Consensus 474 ~~sa~~i~~~~~ 485 (488)
++|+++|++..+
T Consensus 156 ~~S~~eL~~e~~ 167 (188)
T d7mdha2 156 KKSEAELLAEKK 167 (188)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999975543
|
| >d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=99.97 E-value=1.3e-31 Score=245.16 Aligned_cols=159 Identities=28% Similarity=0.487 Sum_probs=149.3
Q ss_pred ChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH
Q psy12825 321 NLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK 400 (488)
Q Consensus 321 ~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~ 400 (488)
+||++|++++||+++|++|.+|+++||||||++++|+||+++++|.|+.++. +++.++++.+.+++++++|++
T Consensus 3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~s~vp~~s~~~i~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~ 75 (163)
T d1guza2 3 VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLL-------PAETIDKLVERTRNGGAEIVE 75 (163)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHS-------CHHHHHHHHHHHHTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccCHhhcccCCccccccC-------CHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999998864 356678899999999999987
Q ss_pred h--cCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 401 L--KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 401 ~--kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
. ||++.|+++.++.+++++++++++.+++++++.+|+||++ ++|||+||+++++|++++++++|+++|+++|++|++
T Consensus 76 ~~~kgsa~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~-~~~~s~P~~lg~~Gv~~i~~l~Ls~~E~~~l~~sa~ 154 (163)
T d1guza2 76 HLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGID-KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAK 154 (163)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHheeccCCCEEEEeeeeccccCCC-CcEEEEeeEEcCCeeEEEecCCCCHHHHHHHHHHHH
Confidence 4 6899999999999999999999999999999999999984 899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++.++.|
T Consensus 155 ~l~~~i~~l 163 (163)
T d1guza2 155 IVDENCKML 163 (163)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhC
Confidence 999998764
|
| >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.97 E-value=2.2e-31 Score=243.71 Aligned_cols=159 Identities=21% Similarity=0.463 Sum_probs=149.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHH
Q psy12825 321 NLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIK 400 (488)
Q Consensus 321 ~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~ 400 (488)
.||++|++++||++||++|.+|+++||||||++++|+||+++++|.|+.++. +++.++++.+.+++++++|++
T Consensus 3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~i~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~ 75 (164)
T d1uxja2 3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFI-------APDRLAQIVERTRKGGGEIVN 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEECCEECSGGGEECCGGGEEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCceeeeeeeeecCCCchhhcc-------chhhHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999998764 366778899999999999975
Q ss_pred --hcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 401 --LKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 401 --~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
.||++.|++|.++.+++++|+++++.++|++++.+|+||++ ++|||+||++|++|++++++++|+++|+++|++|++
T Consensus 76 ~~~kgs~~~a~a~a~~~i~~~i~~~~~~~~~~~~~~~g~ygi~-~~~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~ 154 (164)
T d1uxja2 76 LLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLN-DIYFGVPVILGAGGVEKILELPLNEEEMALLNASAK 154 (164)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred HHhcCcccchHHHHHHHHHHHHhCCCCceeeeeeeeccccCCC-CceEEECeEEeCCeeEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999995 899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
+|++.++.+
T Consensus 155 ~lk~~i~~l 163 (164)
T d1uxja2 155 AVRATLDTL 163 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988764
|
| >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=6.7e-32 Score=247.52 Aligned_cols=165 Identities=27% Similarity=0.487 Sum_probs=144.8
Q ss_pred ecCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHH
Q psy12825 318 SGTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYE 397 (488)
Q Consensus 318 ~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~e 397 (488)
+||.||++|++++||++||++|.+|+++||||||++++|+||+++++|.|+.++.+.. ...++++.+.++++++.
T Consensus 1 ~GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (168)
T d1hyea2 1 LGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFERFK-----ELPIDEIIEDVKTKGEQ 75 (168)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTEEGGGCGGGG-----GCCHHHHHHHHHHHTTS
T ss_pred CCchHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCccccchhheeECCEecccccccc-----hhhhhhHHHHHhhhHHH
Confidence 5899999999999999999999999999999999999999999999999998865321 22346677788888888
Q ss_pred HHHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 398 VIKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 398 Ii~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
++..+++++|+.|.+++.++++++++.+.+++++++..|+|+.++|+|||+||+++++|++++++++|+++|+++|++|+
T Consensus 76 ~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l~Ls~~E~~~l~~Sa 155 (168)
T d1hyea2 76 IIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSA 155 (168)
T ss_dssp CCC------CCHHHHHHHHHHHHHTTCCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred HHHhccCccccchhhhhHHHHhhhccCCCeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecCCCCHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999988777899999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy12825 478 ATISQIQKGL 487 (488)
Q Consensus 478 ~~i~~~~~~~ 487 (488)
+.|++.++.+
T Consensus 156 ~~lk~~~~~~ 165 (168)
T d1hyea2 156 EIIKKYCEEV 165 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.97 E-value=8.1e-31 Score=234.69 Aligned_cols=139 Identities=32% Similarity=0.534 Sum_probs=129.0
Q ss_pred ceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCC--hhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 178 QKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSN--EDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 178 ~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~--~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
.||+||| +|.+|+++|+.++.+++.+||+|+|++ ++.+++.++||+|...+....++ .+.+|++++|||+||+++|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i-~~~~~~~~~~aDiVvitaG 79 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV-RQGGYEDTAGSDVVVITAG 79 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE-EECCGGGGTTCSEEEECCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceE-eeCCHHHhhhcCEEEEecc
Confidence 4999999 599999999999999999999999974 56788999999997665555555 4578999999999999999
Q ss_pred cccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 255 VRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 255 ~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
.++++|++|.|++..|+++++++++.|.++||+++++++|||+|+|+++++|.+|||++||||
T Consensus 80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~~k~sg~~~~rViG 142 (142)
T d1o6za1 80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIG 142 (142)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEE
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHHHHHHCcCcccccC
Confidence 999999999999999999999999999999999999999999999999999999999999998
|
| >d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.97 E-value=1.3e-30 Score=238.62 Aligned_cols=161 Identities=25% Similarity=0.458 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHHHh
Q psy12825 322 LDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVIKL 401 (488)
Q Consensus 322 lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi~~ 401 (488)
||++|++++||+++|++|++|+++||||||++++|+||+++++|.|+.+..... ...++++.++.+.++.++++++..
T Consensus 3 LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~ 80 (165)
T d1t2da2 3 LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNK--LISDAELEAIFDRTVNTALEIVNL 80 (165)
T ss_dssp HHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccceeecccCCcchhhhcccc--hhhhhhhhhhhhhhhhhhHHHhhh
Confidence 899999999999999999999999999999999999999999999988764321 244677788899999999999999
Q ss_pred cCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHHHH
Q psy12825 402 KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAATIS 481 (488)
Q Consensus 402 kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~i~ 481 (488)
+++++|++|.+++.++++++.+.+.+++++++++|+||++ |+|||+||+++++|++++++++|+++|+++|++|+++|+
T Consensus 81 ~~~~~~a~a~a~~~~~~~i~~~~~~~~~~~v~~~g~yg~~-~v~~s~Pv~lg~~Gv~~i~~l~L~~~E~~~L~~s~~~lk 159 (165)
T d1t2da2 81 HASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHS-DIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETK 159 (165)
T ss_dssp TSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE-EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_pred ccceeechhHHHHHHHHHHhhccccceeeeeccccccccC-CeeEeeeEEEcCCceEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984 899999999999999999999999999999999999999
Q ss_pred HHHH
Q psy12825 482 QIQK 485 (488)
Q Consensus 482 ~~~~ 485 (488)
++..
T Consensus 160 ~~~~ 163 (165)
T d1t2da2 160 RMKA 163 (165)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.97 E-value=6.2e-31 Score=237.62 Aligned_cols=143 Identities=30% Similarity=0.523 Sum_probs=131.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag 254 (488)
++.||+|||+|.+|+++++.++++++ .||+|||++++++++.++|++|...+ .....+..+.+|++++|||+||+++|
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag 80 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG 80 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence 35799999999999999998888886 69999999999999999999997542 23566777788999999999999999
Q ss_pred cccCCCcc-----hHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeec
Q psy12825 255 VRSLVGET-----RLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 255 ~~~k~G~~-----r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~g 319 (488)
.++++|++ |.+++..|+++++++++.|.++||++|++++|||+|+|++++++.+|||++||||+|
T Consensus 81 ~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~~~~sg~p~~rViG~G 150 (150)
T d1t2da1 81 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLG 150 (150)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHHHCCCchheeccC
Confidence 99999876 999999999999999999999999999999999999999999999999999999986
|
| >d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=2.3e-30 Score=236.72 Aligned_cols=167 Identities=33% Similarity=0.662 Sum_probs=151.0
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
|.||++|++.+||++||++|.+|+++||||||++++|+||+++++|.++.++..... ......++++.+.++..+.++.
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~v~ 79 (168)
T d1ldna2 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKG-EEAQKDLERIFVNVRDAAYQII 79 (168)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEEEETTEESTTTSGGGT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCccccchhhcccCCcchhhhhhhhh-hhhccchhhhhhhhhhhHHHHH
Confidence 679999999999999999999999999999999999999999999999988764321 1223445678888888899999
Q ss_pred HhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 400 KLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 400 ~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
..++++.|+.+.++.+++++++.+.+.+++++++.+|+||. +++|||+||+++++|+.++++++|+++|+++|++|++.
T Consensus 80 ~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~-~~v~~s~Pv~lg~~Gv~~v~~l~Ls~~E~~~L~~s~~~ 158 (168)
T d1ldna2 80 EKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE-RDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAAT 158 (168)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESTTSC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHhhHHHhhhcccceeeeeeeeeccccCC-CCeeecceEEEcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 68999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q psy12825 480 ISQIQKGLL 488 (488)
Q Consensus 480 i~~~~~~~~ 488 (488)
|++.++.++
T Consensus 159 lk~~i~~a~ 167 (168)
T d1ldna2 159 LKSVLARAF 167 (168)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHc
Confidence 999988764
|
| >d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=99.97 E-value=2e-30 Score=236.61 Aligned_cols=159 Identities=29% Similarity=0.487 Sum_probs=143.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 319 gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
||.||++|++++||+++|++|++|+++||||||++++|+||+++++|.|+.++... .+..++++.+.++++++++
T Consensus 1 GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~-----~~~~~~~i~~~v~~~~~~i 75 (163)
T d1hyha2 1 GTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADA-----GDIDLAAIEEEARKGGFTV 75 (163)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTTTCEECTTTCEETTEEGGGC----------CCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCcCccceeccccCCchHHHHhcc-----ccchHHHHHHHHhhhHHHH
Confidence 79999999999999999999999999999999999999999999999999887643 1234678899999999999
Q ss_pred HHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 399 IKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 399 i~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
+..||+++|++|.++..+++++..+...+++++.+.. +.++|||+||+++++|++++++++|+++|+++|++|++
T Consensus 76 ~~~kg~~~~~~a~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~s~Pv~ig~~Gv~~v~~l~Ls~~E~~~l~~s~~ 150 (163)
T d1hyha2 76 LNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRD-----DMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRD 150 (163)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECT-----TTCSEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHhhHHHHHhcCCccceeeeceecC-----CcceEEEeEEEEcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887643 34689999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++.++.+
T Consensus 151 ~l~~~~~~~ 159 (163)
T d1hyha2 151 YIQQRFDEI 159 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=99.97 E-value=1.1e-30 Score=233.94 Aligned_cols=140 Identities=30% Similarity=0.539 Sum_probs=122.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
++||+|||+|.||+++|+.|+.+++. +++|+|++++++++.++|+.|...+ ....++..++||++++|||+||+++|.
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~ 79 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA 79 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeec
Confidence 46999999999999999999999875 8999999999999999999987532 235678888999999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
++++|++|.|++..|++++++++++|.++||+++++++|||+|+|++++++.+|||++||||
T Consensus 80 ~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~~~~sglp~~rViG 141 (142)
T d1uxja1 80 PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIG 141 (142)
T ss_dssp C---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred cCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999998
|
| >d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=1.8e-30 Score=240.88 Aligned_cols=166 Identities=17% Similarity=0.216 Sum_probs=143.1
Q ss_pred CChHHHHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
|.||++|++++||++||++|++|++ +|||+||++++|+||+++++|.|+.++.++.. .++....+++.+.+++++++|
T Consensus 1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~i 79 (179)
T d5mdha2 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAV-KDDSWLKGEFITTVQQRGAAV 79 (179)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHH-CCHHHHHTHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhceecCcchhhhhhhcc-ccchhhHHHHHHHHHhccHhh
Confidence 6799999999999999999999988 55599999999999999999999877653211 123344567888899999999
Q ss_pred HHhcCC-cchhhHHHHHHHHHHHHcCC--CcEEEEEeeecC-cCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHH
Q psy12825 399 IKLKGY-TSWALGLSVASISHTLLNNT--NKIHAVSTLIQG-HHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLR 474 (488)
Q Consensus 399 i~~kg~-t~~s~A~a~~~ii~aIl~~~--~~v~~vsv~~~G-~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~ 474 (488)
+..|+. +.|++|.++++++++|+++. ..+++++++.+| +||+|+++|||+||+++++|+.++.+++|+++|+++|+
T Consensus 80 ~~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l~L~~~E~~~l~ 159 (179)
T d5mdha2 80 IKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMD 159 (179)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCCCCCHHHHHHHH
T ss_pred hhccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCCCCCHHHHHHHH
Confidence 987654 55899999999999999864 467778888887 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy12825 475 KSAATISQIQKG 486 (488)
Q Consensus 475 ~sa~~i~~~~~~ 486 (488)
+|+++|++.++.
T Consensus 160 ~Sa~~L~~~~~~ 171 (179)
T d5mdha2 160 LTAKELAEEKET 171 (179)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999977654
|
| >d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Lactate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.96 E-value=5.4e-32 Score=249.20 Aligned_cols=167 Identities=36% Similarity=0.669 Sum_probs=149.9
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
|.||++|++++||+++|+++.+|+++||||||++++|+||+++++|.|+.++..... .++.+.++++.+.++.++++++
T Consensus 1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~i~ 79 (172)
T d1llca2 1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP-EIKEDKLVKMFEDVRDAAYEII 79 (172)
T ss_dssp THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSSSCEEEEEEEESTTCCSSSSSSCSC-SSSSSSSSTTTTTTGGGTTTTS
T ss_pred CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCcceeeeeccccCCccHHHHHhhhh-ccchhHHHHHHHhhcchHHHHH
Confidence 679999999999999999999999999999999999999999999999988754321 1222334556677788899999
Q ss_pred HhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHHH
Q psy12825 400 KLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAAT 479 (488)
Q Consensus 400 ~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~~ 479 (488)
+.+|+++|++|.++++++++++.+.+.+++++++++|+||++ ++|||+||++|++|++++++++|+++|+++|++|+++
T Consensus 80 ~~kg~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~-~~~~s~P~~lg~~Gv~~i~~l~L~~~E~~~l~~s~~~ 158 (172)
T d1llca2 80 KLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYGIN-DLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQ 158 (172)
T ss_dssp SSSSCTTHHHHHHHHHHHHHHHHTCCCCEECCCCCSSSSSCC-SSCCBCEEEEETTEEEEECCCCCTTHHHHHHHTTTTT
T ss_pred HhhhhhhhhhHHHHHHHHHHHhcCCCCccceeeeecCccCcc-cceEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 6999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q psy12825 480 ISQIQKGLL 488 (488)
Q Consensus 480 i~~~~~~~~ 488 (488)
|++.+++++
T Consensus 159 lk~~i~~~~ 167 (172)
T d1llca2 159 LKKVLTDAF 167 (172)
T ss_dssp TTTTTTTTC
T ss_pred HHHHHHHHH
Confidence 998876653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=1.2e-29 Score=227.88 Aligned_cols=139 Identities=32% Similarity=0.474 Sum_probs=124.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh--hHHHHHHHHHhhcCCCC-CCCcEE--EcCCccccCCCcEEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE--DRCKGEMLDLQHGAPFL-RSPKIE--SGSDIAMSEGSRIVII 251 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~--e~l~g~~~dL~~~~~~~-~~~~v~--~ttd~eal~dADiVIi 251 (488)
|||+|||| |.+|+++++.|+.+++.+||+|+|+++ +++++.++|+.|..... ...++. .+.||++++|||+||+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 69999997 999999999999999999999999976 46789999999975322 233443 4557899999999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEe
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIG 317 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG 317 (488)
++|.|+++|++|.|++..|+++++++++.|.++||+++ +++|||+|+|++++++.+|||++||||
T Consensus 81 tAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~i-ivVtNPvD~mt~~~~k~sg~p~~rViG 145 (145)
T d1hyea1 81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKI-FVITNPVDVMTYKALVDSKFERNQVFG 145 (145)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEE-EECSSSHHHHHHHHHHHHCCCTTSEEE
T ss_pred ecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeE-EEEcCchHHHHHHHHHHHCcCcccccC
Confidence 99999999999999999999999999999999999885 568999999999999999999999998
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=99.96 E-value=9.1e-30 Score=230.89 Aligned_cols=143 Identities=25% Similarity=0.446 Sum_probs=130.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC-CCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF-LRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~-~~~~~v~~ttd~-eal~dADiVIit 252 (488)
.+++||+|||||.+|+++|+.++..++ .||+|+|++++++++.++|+.|...+ .....+..++++ ++++|||+||++
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvit 83 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVT 83 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEe
Confidence 467899999999999999999999887 48999999999999999999997532 235566677776 689999999999
Q ss_pred cccccCCCc-----chHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEee
Q psy12825 253 AGVRSLVGE-----TRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGS 318 (488)
Q Consensus 253 ag~~~k~G~-----~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~ 318 (488)
+|.++++|+ +|.+++..|+++++++++.|.++||+++++++|||+|++|+++++.+|||++||||+
T Consensus 84 ag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~~~~sg~p~~rViG~ 154 (154)
T d1pzga1 84 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGM 154 (154)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred cccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHHhCcChhcEecC
Confidence 999999985 899999999999999999999999999999999999999999999999999999996
|
| >d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.96 E-value=4.3e-29 Score=226.27 Aligned_cols=159 Identities=31% Similarity=0.534 Sum_probs=147.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 319 GTNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 319 gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
||+||++|++.+||+++|++|++|+++|||+||++++|+||++.+++.+.. ...+++.++.+.++..+.++
T Consensus 2 Gt~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~i 72 (161)
T d1o6za2 2 GGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPE---------FSGDEKEQLLGDLQESAMDV 72 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTBCCC---------CCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCCceeeehhhhcccccccc---------cchHHHHHHHHHhhhhHHHH
Confidence 689999999999999999999999999999999999999999999887643 23566778888899999999
Q ss_pred HHhcCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHHH
Q psy12825 399 IKLKGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSAA 478 (488)
Q Consensus 399 i~~kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa~ 478 (488)
...++++.++.|.+++.++.+++.+.+.+++++++.+|+|+. .++|||+||++|++|++++++++|+++|+++|++|++
T Consensus 73 ~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~S~Pv~ig~~Gv~~v~~l~l~~~E~~~L~~s~~ 151 (161)
T d1o6za2 73 IERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGH-EDTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAE 151 (161)
T ss_dssp HTTTSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHhhHhhhHhhhhccccceeecccccccccc-cCceeeeeeEEcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998875 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy12825 479 TISQIQKGL 487 (488)
Q Consensus 479 ~i~~~~~~~ 487 (488)
.|++.++.+
T Consensus 152 ~L~~~~~~i 160 (161)
T d1o6za2 152 KLSDQYDKI 160 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998865
|
| >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=9.1e-29 Score=227.61 Aligned_cols=161 Identities=16% Similarity=0.134 Sum_probs=134.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeE-EEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHH-HhhhHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGF-IIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHAD-VVNSAYE 397 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~-V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~-v~~~~~e 397 (488)
|.||++|++++||++||++|++|+++ |||+||++++|+||+++++|.|+.++... +....+..+. ++..+..
T Consensus 2 T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 75 (173)
T d1y7ta2 2 TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM------EWYEKVFIPTVAQRGAAI 75 (173)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH------HHHHHTHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeEcCccHHHhccc------ccccchhhhhhhhhHHHH
Confidence 78999999999999999999999985 67999999999999999999999886531 1122333333 4444445
Q ss_pred HHHhcCCcchhhHHHHHHHHHHHHc--CCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHH
Q psy12825 398 VIKLKGYTSWALGLSVASISHTLLN--NTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRK 475 (488)
Q Consensus 398 Ii~~kg~t~~s~A~a~~~ii~aIl~--~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~ 475 (488)
+...++++.|++|.+++.++++++. ++++++|++++.+|+||+|+++|+|+||+++++|++.+.+++|+++|+++|++
T Consensus 76 ~~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l~L~~~E~~~l~~ 155 (173)
T d1y7ta2 76 IQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEI 155 (173)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCCCCCHHHHHHHHH
T ss_pred HHHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCCCCCHHHHHHHHH
Confidence 5566788889999999999999887 56789999999999999999999999999886666555569999999999999
Q ss_pred HHHHHHHHHHh
Q psy12825 476 SAATISQIQKG 486 (488)
Q Consensus 476 sa~~i~~~~~~ 486 (488)
|+++|++.++.
T Consensus 156 s~~~L~~~~e~ 166 (173)
T d1y7ta2 156 TAQELLDEMEQ 166 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877653
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4.5e-29 Score=224.12 Aligned_cols=139 Identities=31% Similarity=0.441 Sum_probs=122.4
Q ss_pred ceEEEEec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~ 255 (488)
|||+|||+ |.||+++++.|+.+ ++.+||+|+|+++ .+++.++||+|+..+.....+..+++|++++|||+||+++|.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 79999995 99999999998765 7889999999975 678999999998643322333335678999999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHH----hcCCCCCcEEe
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWK----LSGFPKNRVIG 317 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k----~sg~p~~rViG 317 (488)
++++|++|.|++..|.++++++++.|.+++|++++|++|||+|+|++++++ .++||++|+||
T Consensus 80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG 145 (145)
T d2cmda1 80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG 145 (145)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence 999999999999999999999999999999999999999999999988765 45799999998
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.95 E-value=8.7e-29 Score=221.99 Aligned_cols=138 Identities=28% Similarity=0.377 Sum_probs=121.4
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEeccc
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITAGV 255 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIitag~ 255 (488)
.||+|||| |.||+++|+.|+.+++.+||+|+|+++ .++.++|++|...+.....+..+++ +++++|||+||+++|.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~--~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~ 78 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccc--cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence 39999997 999999999999999999999999976 4678899999865443333333444 5789999999999999
Q ss_pred ccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHH----HHhcCCCCCcEEe
Q psy12825 256 RSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYIS----WKLSGFPKNRVIG 317 (488)
Q Consensus 256 ~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~----~k~sg~p~~rViG 317 (488)
++++|++|.+++..|+++++++++.|.++||+++++++|||+|++++++ ++.++||++||||
T Consensus 79 ~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG 144 (144)
T d1mlda1 79 PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 144 (144)
T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999999999999999999999999999999999877765 4667899999998
|
| >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Aquaspirillum arcticum [TaxId: 87645]
Probab=99.95 E-value=9e-28 Score=220.39 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHhCCCCCCcee-EEEeecCCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHHH
Q psy12825 321 NLDSMRFRVLLAQKLGLSPESVHG-FIIGEHGDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEVI 399 (488)
Q Consensus 321 ~lds~R~~~~lA~~Lgv~p~~V~~-~V~G~HG~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eIi 399 (488)
.||++|++++||+++|++|++|++ +||||||++++|+||+++++|.++.++.+.. ....+++.+.+..++..+.
T Consensus 2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 76 (171)
T d1b8pa2 2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDD-----AWNRDTFLPTVGKRGAAII 76 (171)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCH-----HHHHHTHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhhhhhh-----cchhhhHHHHHHHHHHHHH
Confidence 489999999999999999999987 7889999999999999999999998875421 1222445556666666776
Q ss_pred HhcCCcchhh--HHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 400 KLKGYTSWAL--GLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 400 ~~kg~t~~s~--A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
..++.++++. +.++..+.+++.++.+.+++++++++|+||+++++|||+||+++++|++.+..++|+++|+++|++|+
T Consensus 77 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l~L~~~e~~~l~~s~ 156 (171)
T d1b8pa2 77 DARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTL 156 (171)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHhCCCccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 6666555543 34455677778888899999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHh
Q psy12825 478 ATISQIQKG 486 (488)
Q Consensus 478 ~~i~~~~~~ 486 (488)
++|++.++.
T Consensus 157 ~~L~~e~~~ 165 (171)
T d1b8pa2 157 NELLEEQNG 165 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999766543
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=99.94 E-value=1e-26 Score=214.80 Aligned_cols=145 Identities=18% Similarity=0.242 Sum_probs=126.6
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCC-----eEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-cccc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYS-----NFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMS 243 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~-----el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal 243 (488)
+..++.||+|+|| |.+|+++++.|+++++++ +|+|+|++. +.+++..+|++|++. +....++.+++ ++++
T Consensus 20 ~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~~~~~ 98 (175)
T d7mdha1 20 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVF 98 (175)
T ss_dssp -CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHT
T ss_pred ccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCccccccchhhc
Confidence 4456789999998 999999999999987643 899999955 578899999999863 44445555554 7899
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEEEeCCchhHHHHHHHh-cCCCCCcEEee
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLIISNPVDVLTYISWKL-SGFPKNRVIGS 318 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv~TNPvdi~t~~~~k~-sg~p~~rViG~ 318 (488)
+|+|+||+++|.+++||++|.|++.+|++|++++++.|.+||| +++|+++|||+|++|++++++ +++|++||+|+
T Consensus 99 ~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~~~i~~m 175 (175)
T d7mdha1 99 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL 175 (175)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred cCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCHHHEeCC
Confidence 9999999999999999999999999999999999999999987 788999999999999999996 79999999985
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=7.1e-27 Score=211.49 Aligned_cols=143 Identities=22% Similarity=0.287 Sum_probs=121.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCC-----CeEEEEeCCh--hHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIY-----SNFCLIDSNE--DRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~-----~el~L~Di~~--e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~d 245 (488)
++++||+|||| |.+|+++++.|+.++++ .+|+|+|+++ +.+++..+|+.+.. +.....+..+.+ +++++|
T Consensus 1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (154)
T d5mdha1 1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLLKDVIATDKEEIAFKD 79 (154)
T ss_dssp CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTEEEEEEESCHHHHTTT
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccc-cccccccccCcccccccCC
Confidence 46899999997 99999999999987653 3799999965 45566666677764 333444555444 689999
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCc-EEEEEeCCchhHHHHHHHhc-CCCCCcEEee
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDC-ILLIISNPVDVLTYISWKLS-GFPKNRVIGS 318 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a-~vIv~TNPvdi~t~~~~k~s-g~p~~rViG~ 318 (488)
||+||+++|.|+++|++|.|++.+|+++++++++.|.++||++ ++|++|||+|+||++++|++ |||++||+|+
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v~~m 154 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCL 154 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHEeCC
Confidence 9999999999999999999999999999999999999999865 57889999999999999999 9999999885
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=2.3e-26 Score=208.10 Aligned_cols=141 Identities=19% Similarity=0.318 Sum_probs=120.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCe-----EEEEe--CChhHHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSN-----FCLID--SNEDRCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~e-----l~L~D--i~~e~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dA 246 (488)
+++||+|||| |.+|+++++.|++++++++ +.|+| .+.+.+++..+|+.+... .....+..+ +++++++||
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a 81 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDA 81 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhcccc
Confidence 5789999998 9999999999999987653 44444 466788888999988753 333444444 457899999
Q ss_pred cEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEEEeCCchhHHHHHHHh-cCCCCCcEEe
Q psy12825 247 RIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLIISNPVDVLTYISWKL-SGFPKNRVIG 317 (488)
Q Consensus 247 DiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv~TNPvdi~t~~~~k~-sg~p~~rViG 317 (488)
|+||+++|.+++||++|.|++.+|+++++++++.|.+||| +++++++|||+|++|++++|+ +|||++|||+
T Consensus 82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rvia 154 (154)
T d1y7ta1 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA 154 (154)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEE
T ss_pred cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhccC
Confidence 9999999999999999999999999999999999999985 799999999999999998885 7999999984
|
| >d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=2.8e-26 Score=210.20 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=126.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeec-CCCcccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEH-GDSSVPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~H-G~~~vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
|.||++|++++||++||++|.+|+++|+|+| |++++||||++.+++. ++.++++++.+.+++++++|
T Consensus 2 T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~------------~~~~~~~~l~~~v~~~~~ei 69 (169)
T d1mlda2 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVD------------FPQDQLSTLTGRIQEAGTEV 69 (169)
T ss_dssp CHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCC------------CCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCC------------CcHHHHHHHHHHHHHhHHHH
Confidence 7899999999999999999999999999999 5678888887765432 34677889999999999999
Q ss_pred HHhcCCc---chhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHH
Q psy12825 399 IKLKGYT---SWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLR 474 (488)
Q Consensus 399 i~~kg~t---~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~ 474 (488)
++.|+.+ .++++++++.++.+++.+.....++.+...+.|+..+++|+|+||++|++|+++++++ +|+++|+++|+
T Consensus 70 i~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~ 149 (169)
T d1mlda2 70 VKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIA 149 (169)
T ss_dssp HHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHH
T ss_pred HHhhcCcChHhHHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHH
Confidence 9988644 4566778888888877543322333334445566677899999999999999999997 79999999999
Q ss_pred HHHHHHHHHHHh
Q psy12825 475 KSAATISQIQKG 486 (488)
Q Consensus 475 ~sa~~i~~~~~~ 486 (488)
+|++.|++.++.
T Consensus 150 ~s~~~lk~~I~~ 161 (169)
T d1mlda2 150 EAIPELKASIKK 161 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999976653
|
| >d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: Lactate & malate dehydrogenases, C-terminal domain domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.2e-25 Score=203.52 Aligned_cols=154 Identities=22% Similarity=0.263 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHHHhCCCCCCceeEEEeecCCCc-ccccccceecCccccccCCCCCCCCChHHHHHHHHHHhhhHHHH
Q psy12825 320 TNLDSMRFRVLLAQKLGLSPESVHGFIIGEHGDSS-VPVWSGVNVAGVTLKELNPTIGTEQDTENFVRLHADVVNSAYEV 398 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p~~V~~~V~G~HG~~~-vp~~S~a~v~g~pl~e~~~~~~~~~~~~~~~el~~~v~~~~~eI 398 (488)
|.||++|+++++|+++|++|++|+++|+|+||+++ +||+|++... .++..+++++.+.++.++.++
T Consensus 2 T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~~-------------~~~~~~~~~l~~~v~~~g~~i 68 (167)
T d2cmda2 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-------------SFTEQEVADLTKRIQNAGTEV 68 (167)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTTC-------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccCC-------------CCcHHHHHHHHHHHHhhhhhh
Confidence 78999999999999999999999999999997655 5555654311 234677889999999999999
Q ss_pred HHhc---CCcchhhHHHHHHHHHHHHcCCCcEEEEEeeecCcCCCCCceEEEEEEEEcCCceEEEecc-CCCHHHHHHHH
Q psy12825 399 IKLK---GYTSWALGLSVASISHTLLNNTNKIHAVSTLIQGHHGIEEEVFLSLPCVMADNGVTHIINQ-NLTPDEAEKLR 474 (488)
Q Consensus 399 i~~k---g~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~G~ygl~~d~~~svPv~igk~Gv~~i~~l-~L~~~E~~~L~ 474 (488)
++.+ +++.|++|.++++++++|+.+.+...++++...++|+.++++|||+||+++++|+++++++ +|+++|+++|+
T Consensus 69 i~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~ 148 (167)
T d2cmda2 69 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALE 148 (167)
T ss_dssp HHHHTTSCSCCHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHH
T ss_pred hhhhccCcchHHHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHH
Confidence 9766 5678999999999999999887777777777777888888999999999999999999997 69999999999
Q ss_pred HHHHHHHHHHHh
Q psy12825 475 KSAATISQIQKG 486 (488)
Q Consensus 475 ~sa~~i~~~~~~ 486 (488)
+|+++|++.++.
T Consensus 149 ~s~~~lk~~I~~ 160 (167)
T d2cmda2 149 GMLDTLKKDIAL 160 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999976643
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.92 E-value=9.4e-26 Score=207.20 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=116.6
Q ss_pred CceEEEEecccchHHHHH-HHHHc-C-C-CCeEEEEeCChhHHHHHHHHHhhcCC---CCCCCcEEEcCCc-cccCCCcE
Q psy12825 177 DQKITVVGAGQVGMACTY-SILTQ-G-I-YSNFCLIDSNEDRCKGEMLDLQHGAP---FLRSPKIESGSDI-AMSEGSRI 248 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~-~La~~-~-l-~~el~L~Di~~e~l~g~~~dL~~~~~---~~~~~~v~~ttd~-eal~dADi 248 (488)
++||+|||||++|.+.+. .++.. . + .+||+|+|+++++.++.++|+.+... +....++..++|+ ++++|||+
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv 80 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 80 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence 479999999999876433 33332 2 2 36999999999888888888876421 2345778888886 78999999
Q ss_pred EEEecccccCCCcchHhhH--------------------hhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhc
Q psy12825 249 VIITAGVRSLVGETRLQLV--------------------DRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLS 308 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll--------------------~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~s 308 (488)
||++++.++++|++|++++ .+|++++++++++|+++||++|+|++|||+|+||++++|+
T Consensus 81 Vv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~- 159 (169)
T d1s6ya1 81 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY- 159 (169)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH-
T ss_pred EEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHH-
Confidence 9999999888877777664 6899999999999999999999999999999999999998
Q ss_pred CCCCCcEEeecC
Q psy12825 309 GFPKNRVIGSGT 320 (488)
Q Consensus 309 g~p~~rViG~gt 320 (488)
+|++||||+ |
T Consensus 160 -~p~~kviGl-C 169 (169)
T d1s6ya1 160 -TKQEKVVGL-C 169 (169)
T ss_dssp -CCCCCEEEC-C
T ss_pred -CCCCCEEee-C
Confidence 478899998 6
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=1.9e-25 Score=204.77 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=117.3
Q ss_pred CCceEEEEecccchHHHHH-HHHHc--CC-CCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 176 PDQKITVVGAGQVGMACTY-SILTQ--GI-YSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~-~La~~--~l-~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~-eal~dADiV 249 (488)
+..||+|||||++|+..+. .++.. .+ .+||+|+|+|++++++.+.++.+... .....++..++|+ ++++|||||
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 4579999999999987544 33332 22 36999999999999988888887543 2235678888886 789999999
Q ss_pred EEecccccCCCcchHhhHh--------------------hhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcC
Q psy12825 250 IITAGVRSLVGETRLQLVD--------------------RNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSG 309 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~--------------------~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg 309 (488)
|++++.++++|++|.+++. +|++++++++++|+++||++|+|++|||+|++|++++|+
T Consensus 82 vitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k~-- 159 (167)
T d1u8xx1 82 MAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL-- 159 (167)
T ss_dssp EECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHH--
T ss_pred EECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHHH--
Confidence 9999999999999888754 679999999999999999999999999999999999998
Q ss_pred CCCCcEE
Q psy12825 310 FPKNRVI 316 (488)
Q Consensus 310 ~p~~rVi 316 (488)
+|++|||
T Consensus 160 ~P~~rVI 166 (167)
T d1u8xx1 160 RPNSKIL 166 (167)
T ss_dssp STTCCEE
T ss_pred CCccccc
Confidence 5889987
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.5e-25 Score=201.95 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=109.6
Q ss_pred ceEEEEecccchHHHHHHHHHcC----CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEe
Q psy12825 178 QKITVVGAGQVGMACTYSILTQG----IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~----l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIit 252 (488)
|||+|||||++|++.++..+... ..+||+|+|+|+++++. +.|+.+... ....++..+++ +++++|||+||++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~-~~d~~~~~~-~~~~~~~~t~~~~~~l~~aDvVVit 78 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLV-KDRFKVLISDTFEGAVVDAKYVIFQ 78 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHH-TTSSEEEECSSHHHHHTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHH-HHHHHHhhh-ccCceEEEecCcccccCCCCEEEEe
Confidence 69999999999999877644332 25799999999999874 667766542 23456666665 5899999999999
Q ss_pred cccccCCCcchHhhHhh--------------------hHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCC
Q psy12825 253 AGVRSLVGETRLQLVDR--------------------NVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPK 312 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~--------------------N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~ 312 (488)
++.+++++++|++++.. +++++.++.+ +.++||++|+|++|||+|++|+++++++ |+
T Consensus 79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~~~~~--p~ 155 (162)
T d1up7a1 79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFVRNYL--EY 155 (162)
T ss_dssp CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHHHHTT--CC
T ss_pred cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHHHHhC--CC
Confidence 99998888888776544 5566666655 7788999999999999999999999985 67
Q ss_pred CcEEeecC
Q psy12825 313 NRVIGSGT 320 (488)
Q Consensus 313 ~rViG~gt 320 (488)
+||+|+ |
T Consensus 156 ~rviGl-C 162 (162)
T d1up7a1 156 EKFIGL-C 162 (162)
T ss_dssp SSEEEC-C
T ss_pred CCEEee-C
Confidence 899998 6
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.5e-24 Score=197.93 Aligned_cols=139 Identities=23% Similarity=0.277 Sum_probs=115.2
Q ss_pred CCceEEEEecccchHHHHH--HHHHc-CC-CCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 176 PDQKITVVGAGQVGMACTY--SILTQ-GI-YSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~--~La~~-~l-~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~-eal~dADiV 249 (488)
+++||+|||||++|++.+. .++.. .+ .+||+|+|+|++++++.+.|+.+... +....++..++|+ ++++|||||
T Consensus 1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 4689999999999987543 34433 33 46999999999999999999998643 3456788888897 789999999
Q ss_pred EEecccc------------------cCCCcchHhh--------HhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHH
Q psy12825 250 IITAGVR------------------SLVGETRLQL--------VDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYI 303 (488)
Q Consensus 250 Iitag~~------------------~k~G~~r~dl--------l~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~ 303 (488)
|++++.+ +.++++|.++ +.+|+++++++++.|+++||++|+|++|||+|++|++
T Consensus 81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t~~ 160 (171)
T d1obba1 81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTL 160 (171)
T ss_dssp EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHH
T ss_pred eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHHHH
Confidence 9997653 3345666554 5689999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEe
Q psy12825 304 SWKLSGFPKNRVIG 317 (488)
Q Consensus 304 ~~k~sg~p~~rViG 317 (488)
++|++++ |+||
T Consensus 161 ~~k~~~~---k~iG 171 (171)
T d1obba1 161 VTRTVPI---KAVG 171 (171)
T ss_dssp HHHHSCS---EEEE
T ss_pred HHHhcCC---CccC
Confidence 9999876 7886
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.36 E-value=7.1e-13 Score=122.03 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=105.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC----C---CC------CCCcEEEcCCccc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA----P---FL------RSPKIESGSDIAM 242 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~----~---~~------~~~~v~~ttd~ea 242 (488)
+.+||+|||||.||.++|..++..|+ +|+|+|++++.++.....+.... . .. ...++..++++++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD 80 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc
Confidence 35689999999999999999999998 89999999987765444433221 1 00 1345777888899
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEE------
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVI------ 316 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rVi------ 316 (488)
+.+||+||+++ .+|.++.+++.++|++++|.. .|++||.+.+...-+...... |+|++
T Consensus 81 ~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~-~IiaSnTS~l~i~~la~~~~~-p~r~~g~Hf~n 144 (186)
T d1wdka3 81 FGNVDLVVEAV--------------VENPKVKQAVLAEVENHVRED-AILASNTSTISISLLAKALKR-PENFVGMHFFN 144 (186)
T ss_dssp GGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTT-CEEEECCSSSCHHHHGGGCSC-GGGEEEEECCS
T ss_pred ccccceeeeee--------------cchHHHHHHHHHHHHhhcCCC-eeEEeccccccHHHHHHhccC-chheEeecccc
Confidence 99999999996 588999999999999998766 578999987544434333322 34444
Q ss_pred ------------eecCChHHHHHHHHHHHHhCCCC
Q psy12825 317 ------------GSGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 317 ------------G~gt~lds~R~~~~lA~~Lgv~p 339 (488)
|-.|.-++...-..+++.+|..|
T Consensus 145 P~~~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~p 179 (186)
T d1wdka3 145 PVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNP 179 (186)
T ss_dssp STTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CcccCCeEEECCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 44455555555566666666554
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.9e-12 Score=118.52 Aligned_cols=145 Identities=20% Similarity=0.314 Sum_probs=105.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC------CC------------CCCcEEEc
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP------FL------------RSPKIESG 237 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~------~~------------~~~~v~~t 237 (488)
.-+||+|||||.||.++|..++..|+ +|+|+|++++.++.....+.+... +. ...++..+
T Consensus 3 ~IkkvaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 80 (192)
T d1f0ya2 3 IVKHVTVIGGGLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 80 (192)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEEECcCHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc
Confidence 34699999999999999999999998 999999999877655444433210 00 12467778
Q ss_pred CCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh-HHHHHHHhcCCCCCcE
Q psy12825 238 SDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV-LTYISWKLSGFPKNRV 315 (488)
Q Consensus 238 td~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi-~t~~~~k~sg~p~~rV 315 (488)
+|+ ++++|||+||+++ .+|.++.+++..+|++++|.. .|++||.+.+ ++.++ ..+.. |+|+
T Consensus 81 ~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~i~~la-~~~~~-p~r~ 143 (192)
T d1f0ya2 81 TDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEH-TIFASNTSSLQITSIA-NATTR-QDRF 143 (192)
T ss_dssp SCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTT-CEEEECCSSSCHHHHH-TTSSC-GGGE
T ss_pred chhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccC-ceeeccCcccccchhh-hhccC-HhHE
Confidence 887 5799999999996 588999999999999998766 6779999874 44443 33332 4555
Q ss_pred Ee------------------ecCChHHHHHHHHHHHHhCCCC
Q psy12825 316 IG------------------SGTNLDSMRFRVLLAQKLGLSP 339 (488)
Q Consensus 316 iG------------------~gt~lds~R~~~~lA~~Lgv~p 339 (488)
+| -.|..++...-..+++.+|..|
T Consensus 144 ig~HffnP~~~~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~p 185 (192)
T d1f0ya2 144 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 185 (192)
T ss_dssp EEEEECSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred EeeccccccCcccEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 54 4455555555556667777554
|
| >d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=3.6e-11 Score=115.75 Aligned_cols=146 Identities=20% Similarity=0.256 Sum_probs=105.5
Q ss_pred HHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccC-CC-------C-CCCCChHHH-----------
Q psy12825 326 RFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELN-PT-------I-GTEQDTENF----------- 384 (488)
Q Consensus 326 R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~-~~-------~-~~~~~~~~~----------- 384 (488)
.+.+.||+.||+++++|...+.| || +.|+.+.+++|+++...+ .+ . ...++.+.+
T Consensus 5 ~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl 80 (253)
T d1up7a2 5 NFIREIAEMFSARLEDVFLKYYGLNH----LSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYL 80 (253)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECGGG
T ss_pred HHHHHHHHHhCCCHHHcEEEEEEECC----hhheEeeEECCEechHHHHHHHHHhccCCccccCcHHHHHhcCeeEcccc
Confidence 47889999999999999999999 99 999999999997754311 00 0 000111100
Q ss_pred ------HHHHHHHh---hhHHHHHHh--------------------cCCcchhhHHHHHHHHHHHHcCCCcEEEEEeeec
Q psy12825 385 ------VRLHADVV---NSAYEVIKL--------------------KGYTSWALGLSVASISHTLLNNTNKIHAVSTLIQ 435 (488)
Q Consensus 385 ------~el~~~v~---~~~~eIi~~--------------------kg~t~~s~A~a~~~ii~aIl~~~~~v~~vsv~~~ 435 (488)
++..+... +++.++... ++...| +..++.+|++|.++.+.++.+||.|+
T Consensus 81 ~Yy~~~~~~~~~~~~~~tra~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~e~a~~ii~ai~~~~~~~~~vNv~N~ 158 (253)
T d1up7a2 81 RYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMY--STAAAHLIRDLETDEGKIHIVNTRNN 158 (253)
T ss_dssp HHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTH--HHHHHHHHHHHHSSSCEEEEEEEECT
T ss_pred hhhcCcHHHHHHhccccChHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcch--HHHHHHHHHHHHcCCCcEEEEeCCCc
Confidence 11111111 122222211 122333 35689999999999999999999999
Q ss_pred Cc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 436 GH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 436 G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
|. -|||+|+++++||+|+++|+.++...+|++...++++.-.
T Consensus 159 G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~g~lP~~~~~Li~~~~ 201 (253)
T d1up7a2 159 GSIENLPDDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVK 201 (253)
T ss_dssp TSSTTSCTTCEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHH
T ss_pred CcCCCCChhhheEEEEEecCCcccccccCCCcHHHHHHHHHHH
Confidence 98 7999999999999999999999988999999988876643
|
| >d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=99.17 E-value=2.1e-11 Score=118.80 Aligned_cols=153 Identities=14% Similarity=0.210 Sum_probs=104.9
Q ss_pred CChHHHHHHHHHHHHhCCCC-CCceeEEEe-ecCCCcccccccce-ecCccccccCC----------CCCC-----CCCh
Q psy12825 320 TNLDSMRFRVLLAQKLGLSP-ESVHGFIIG-EHGDSSVPVWSGVN-VAGVTLKELNP----------TIGT-----EQDT 381 (488)
Q Consensus 320 t~lds~R~~~~lA~~Lgv~p-~~V~~~V~G-~HG~~~vp~~S~a~-v~g~pl~e~~~----------~~~~-----~~~~ 381 (488)
|+.+. .+++.+|+.||++| ++|...+.| || +.||.+.+ .+|+++...+. .... .+..
T Consensus 2 C~~p~-~~~~~ia~~Lgv~~~~ev~~~~~GLNH----~~w~~~v~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~ 76 (276)
T d1u8xx2 2 CDMPV-GIEDRMAQILGLSSRKEMKVRYYGLNH----FGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWND 76 (276)
T ss_dssp CSHHH-HHHHHHHHHHTCSCGGGEEEEEEEETT----EEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC-------CTTS
T ss_pred CCchH-HHHHHHHHHcCCCchhceEEEEEeecc----HHHHhheeccCCEECHHHHHHHHHhcCCCCcccccccccccHH
Confidence 66654 58899999999987 579999999 99 88888887 67876443110 0000 0000
Q ss_pred H--------------------HH----HHHHHH---HhhhHHHHHHhc-----------------C---CcchhhHHHHH
Q psy12825 382 E--------------------NF----VRLHAD---VVNSAYEVIKLK-----------------G---YTSWALGLSVA 414 (488)
Q Consensus 382 ~--------------------~~----~el~~~---v~~~~~eIi~~k-----------------g---~t~~s~A~a~~ 414 (488)
+ .| ++..+. -.+++.++++.. . ...-..+..++
T Consensus 77 ~~~~~~~~~~~~~~~~p~~Yl~Yy~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~av 156 (276)
T d1u8xx2 77 TFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIV 156 (276)
T ss_dssp HHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCCTTTHHHH
T ss_pred HHHHHhCCcccCCcccchhHHHhccchHHHHHHhccCCCcHHHHHHHHHHHHHHhHHhhcccccchhhcccCCchHHHHH
Confidence 0 00 000000 011223333221 0 01112345678
Q ss_pred HHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 415 SISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 415 ~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
++|++|.++.+.++.+||.|+|. .|||+|+++++||+|+++|+.++...+|++..+++++.-.
T Consensus 157 ~ii~ai~~~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~g~lP~~~~~Li~~~k 220 (276)
T d1u8xx2 157 DLARAIAYNTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQV 220 (276)
T ss_dssp HHHHHHHHTCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeecCCCcHHHHHHHHHHH
Confidence 99999999999999999999998 7999999999999999999999988999999988887543
|
| >d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.14 E-value=2.2e-10 Score=111.09 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=102.5
Q ss_pred HHHHHHHHHhCCCCCCceeEEEe-ecCCCcccccccceecCccccccCC----C---C--C-C-----CCCh--------
Q psy12825 326 RFRVLLAQKLGLSPESVHGFIIG-EHGDSSVPVWSGVNVAGVTLKELNP----T---I--G-T-----EQDT-------- 381 (488)
Q Consensus 326 R~~~~lA~~Lgv~p~~V~~~V~G-~HG~~~vp~~S~a~v~g~pl~e~~~----~---~--~-~-----~~~~-------- 381 (488)
.+.+.+|+.||+++++|+..+.| || +.|+.+.+++|+++...+. . . . . .+..
T Consensus 5 ~~~~~la~~Lg~~~~~i~~~~~GlNH----~~W~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T d1s6ya2 5 GMRMGVAKLLGVDADRVHIDFAGLNH----MVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLKV 80 (270)
T ss_dssp HHHHHHHHHHTSCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHHHHSCC------------CCCCHHHHHHHCS
T ss_pred HHHHHHHHHcCCCHHHcEEEEEeeCC----HhHeeeeEECCccccHHHHHHHhcccccccccccccccCcCHHHHHhccc
Confidence 46788999999999999999999 99 8888888888876543110 0 0 0 0 0100
Q ss_pred ------------HH-HHHHHHHHh---hhH-------HHHHH---------------hcCCcchhhHHHHHHHHHHHHcC
Q psy12825 382 ------------EN-FVRLHADVV---NSA-------YEVIK---------------LKGYTSWALGLSVASISHTLLNN 423 (488)
Q Consensus 382 ------------~~-~~el~~~v~---~~~-------~eIi~---------------~kg~t~~s~A~a~~~ii~aIl~~ 423 (488)
++ +.+..+.-. .+. .+.++ .+++.. .+..++.+|+||.++
T Consensus 81 ~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~e~a~~ii~ai~~~ 158 (270)
T d1s6ya2 81 LPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAY--YSDAACSLISSIYND 158 (270)
T ss_dssp BCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CCSCC--HHHHHHHHHHHHHHT
T ss_pred EeccccccccccHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHhHHhccCcchhhhccCcc--hHHHHHHHHHHHhcC
Confidence 11 111111000 011 11110 011222 235688999999999
Q ss_pred CCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCCCHHHHHHHHHHH
Q psy12825 424 TNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNLTPDEAEKLRKSA 477 (488)
Q Consensus 424 ~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L~~~E~~~L~~sa 477 (488)
.+.++.+||.|+|. -|||+|+++++||+|+++|+.++...+|++..+++++...
T Consensus 159 ~~~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~g~lP~~~~~Li~~~~ 213 (270)
T d1s6ya2 159 KRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVGDLPVAVRGLVQQIK 213 (270)
T ss_dssp CCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcCCCCCccceEEEEEEEECCceEeeecCCCcHHHHHHHHHHH
Confidence 99999999999998 7999999999999999999999988999999999887654
|
| >d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=1.2e-09 Score=107.63 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEec-cCCCHHHHH-HHHH
Q psy12825 413 VASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIIN-QNLTPDEAE-KLRK 475 (488)
Q Consensus 413 ~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~-l~L~~~E~~-~L~~ 475 (488)
++++|+||.++++.++.++|.|+|. .|+|+|++++|||+|+++|+.|+.. .+||+..+. +++.
T Consensus 184 a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~~ 249 (308)
T d1obba2 184 HIPFIDALLNDNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLRP 249 (308)
T ss_dssp HHHHHHHHHHCCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHHHHHHH
Confidence 7899999999999999999999998 8999999999999999999999975 789986644 5543
|
| >d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: LDH C-terminal domain-like superfamily: LDH C-terminal domain-like family: AglA-like glucosidase domain: Putative alpha-glucosidase TM0752 species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=1.2e-08 Score=99.06 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCc-CCCCCceEEEEEEEEcCCceEEEeccCC
Q psy12825 412 SVASISHTLLNNTNKIHAVSTLIQGH-HGIEEEVFLSLPCVMADNGVTHIINQNL 465 (488)
Q Consensus 412 a~~~ii~aIl~~~~~v~~vsv~~~G~-ygl~~d~~~svPv~igk~Gv~~i~~l~L 465 (488)
.++++|+||.+|++.++.+||.|+|. .|+|+|++++|||+|+++|+.++...++
T Consensus 154 ~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~vg~~ 208 (278)
T d1vjta2 154 QHIPFINAIANNKRVRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKVEPD 208 (278)
T ss_dssp SHHHHHHHHHHCCCEEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCCCSC
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeecCCC
Confidence 46899999999999999999999998 7999999999999999999999876644
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.69 E-value=1.5e-09 Score=97.35 Aligned_cols=59 Identities=39% Similarity=0.620 Sum_probs=50.1
Q ss_pred chHHhhhhccCCCC-CCCCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 113 STVDRLLSQVAPSI-ESPDQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 113 ~~~~~~~~~~~~~~-~~~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
++|.+++.++.+++ ..+++||+|||+|+||.++||+++.+++++|++++| ++..++.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alD 64 (160)
T d1i0za1 2 TLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD 64 (160)
T ss_dssp CHHHHHCCCSSCSCCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH
T ss_pred chhhhhccCcCcccccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHH
Confidence 46689999998765 447789999999999999999999999999999999 456566544
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.64 E-value=4.5e-08 Score=90.09 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=79.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---------CCCCCcEEEcCCc-cccCCCc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---------FLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---------~~~~~~v~~ttd~-eal~dAD 247 (488)
|||+|||+|.+|..+|..|+.+|. +|+.||+|+++.+.+......... .....++..++|+ +++++||
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d 78 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD 78 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred CEEEEECCCHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence 799999999999999999999997 999999999877654211111100 0124567778887 5799999
Q ss_pred EEEEecccccCC-CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE-eCCchhH
Q psy12825 248 IVIITAGVRSLV-GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII-SNPVDVL 300 (488)
Q Consensus 248 iVIitag~~~k~-G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~-TNPvdi~ 300 (488)
+++++++.|... +......+. .+...+...++...++.++|+- |-|....
T Consensus 79 ~i~i~VpTP~~~~~~~d~~~~~---~~~~~i~~~~~~~~~~~liii~STv~pGtt 130 (202)
T d1mv8a2 79 VSFICVGTPSKKNGDLDLGYIE---TVCREIGFAIREKSERHTVVVRSTVLPGTV 130 (202)
T ss_dssp EEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHTTCCSCCEEEECSCCCTTHH
T ss_pred EEEEecCccccccccccchhhh---hhhhhhhheeecccCCcceeeccccCCcch
Confidence 999999887543 222222222 3445555556666677766665 4455543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=3.9e-09 Score=94.43 Aligned_cols=59 Identities=34% Similarity=0.529 Sum_probs=50.5
Q ss_pred chHHhhhhccCCCCCCCCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 113 STVDRLLSQVAPSIESPDQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
|+|.+|+....+....+++||+|||+|+||.++||+++.+++++|++++| +++.++.+|
T Consensus 2 ~~~~~l~~~~~~~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alD 63 (159)
T d2ldxa1 2 TVKEQLIQNLVPEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALD 63 (159)
T ss_dssp CHHHHHEEECSSCCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHH
T ss_pred cHHHHHHhhhcccccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHH
Confidence 56789898888766778889999999999999999999999999999999 455555544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.54 E-value=1.8e-07 Score=83.29 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=66.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCC----CCcEEEcCCc-cccCCCcEEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLR----SPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~----~~~v~~ttd~-eal~dADiVIi 251 (488)
.+||+|||+|.||..+|..|+..|. +|.+||+++++++.....-........ ......++|. +++++||+||+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii 78 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI 78 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence 3799999999999999999999997 999999998877654322211110010 1112234565 67999999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEE
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLII 293 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~ 293 (488)
+...+ ...+++++|+.+ .++.+++..
T Consensus 79 ~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 79 VVPAI----------------HHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp CSCGG----------------GHHHHHHHHGGGCCTTCEEEES
T ss_pred EEchh----------------HHHHHHHHhhhccCCCCEEEEe
Confidence 96211 345677778877 456654433
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.53 E-value=4.7e-07 Score=79.93 Aligned_cols=91 Identities=20% Similarity=0.402 Sum_probs=65.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEeccccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVRS 257 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~~ 257 (488)
|||+|||+|.||+++|..|..++. +|+.||++++.++.. .+..- .. ...++.+++++||+||++..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a-~~~~~-------~~-~~~~~~~~~~~~DiIilavp--- 66 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKA-VERQL-------VD-EAGQDLSLLQTAKIIFLCTP--- 66 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTS-------CS-EEESCGGGGTTCSEEEECSC---
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHH-HHhhc-------cc-eeeeecccccccccccccCc---
Confidence 799999999999999999998887 999999998766532 22210 11 23456789999999999851
Q ss_pred CCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 258 LVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 258 k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
...+.++.+.+..+ .++.+++..++
T Consensus 67 -------------~~~~~~vl~~l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 67 -------------IQLILPTLEKLIPHLSPTAIVTDVAS 92 (165)
T ss_dssp -------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred -------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence 23455666667665 56666555544
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.53 E-value=6e-08 Score=88.70 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC---CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP---FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~---~~~~~~v~~ttd~-eal~dADiV 249 (488)
.+.+.||+|||||.+|+++|..|+.++. +|.|++++++.++.+...-.+... .....++..++|+ +++++||+|
T Consensus 4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~i 81 (189)
T d1n1ea2 4 LLYLNKAVVFGSGAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEII 81 (189)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCE
T ss_pred cceeceEEEECCCHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEE
Confidence 4567799999999999999999998886 899999998877654333222111 1234678888887 579999999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
|+++
T Consensus 82 iiav 85 (189)
T d1n1ea2 82 LFVI 85 (189)
T ss_dssp EECS
T ss_pred EEcC
Confidence 9986
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.32 E-value=3.2e-07 Score=82.79 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=66.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC---CC---CCCCcEEEcCCc-cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA---PF---LRSPKIESGSDI-AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~---~~---~~~~~v~~ttd~-eal~dADiVI 250 (488)
|||+|||+|.+|+++|..|+.++. +|.|+.++.+. .....++..- .+ .....+..++|. +++++||+||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~--~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii 76 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGN--EVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL 76 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC--EEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--EEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhh
Confidence 799999999999999999999887 89999874331 1233343221 11 123456667776 5799999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++.. ...++++++++..+-++..+++.+
T Consensus 77 ~avp----------------s~~~~~~~~~l~~~l~~~~ii~~t 104 (180)
T d1txga2 77 LGVS----------------TDGVLPVMSRILPYLKDQYIVLIS 104 (180)
T ss_dssp ECSC----------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred cccc----------------hhhhHHHHHhhccccccceecccc
Confidence 9862 124567777888876665555554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=98.22 E-value=6e-06 Score=72.74 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=63.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|+||+|||+|.||.++|..|...++..+|+.||++++.++. +.+... ...+....+.....++|+||++..
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~-a~~~~~------~~~~~~~~~~~~~~~~dlIila~p-- 71 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK-AVDLGI------IDEGTTSIAKVEDFSPDFVMLSSP-- 71 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH-HHHTTS------CSEEESCGGGGGGTCCSEEEECSC--
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHH-HHHhhc------chhhhhhhhhhhccccccccccCC--
Confidence 35799999999999999999998876789999999876653 222211 112221112245678999999962
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
...+.++.+++..+ .++.+++-++..
T Consensus 72 --------------~~~~~~vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 72 --------------VRTFREIAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp --------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred --------------chhhhhhhhhhhccccccccccccccc
Confidence 12344455556554 566766555543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.08 E-value=2e-07 Score=81.57 Aligned_cols=41 Identities=29% Similarity=0.504 Sum_probs=35.5
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
+||+|||+|+||+++||.++++++++|++++| +++.++.+|
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D 45 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD 45 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH
Confidence 79999999999999999999999999999999 445454443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.06 E-value=3.8e-06 Score=73.24 Aligned_cols=65 Identities=12% Similarity=0.284 Sum_probs=52.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
|||++||+|.||.+++..|+..+. .+|.++|+++++++....++ .+....+.++++++|+||++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~-~~i~v~~r~~~~~~~l~~~~----------~~~~~~~~~~v~~~Div~lav 65 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRERLEKEL----------GVETSATLPELHSDDVLILAV 65 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHHHHHHT----------CCEEESSCCCCCTTSEEEECS
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCC-CcEEEEeCChhHHHHhhhhc----------ccccccccccccccceEEEec
Confidence 699999999999999999887763 48999999998876544332 123456778899999999996
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.05 E-value=1.5e-07 Score=82.25 Aligned_cols=42 Identities=19% Similarity=0.436 Sum_probs=35.0
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
++||+|||+|+||+++||+++.+++++|++++| +++.++.+|
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D 45 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD 45 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee
Confidence 479999999999999999999999999999999 444444443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=4.1e-07 Score=79.55 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=67.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-CCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-FLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||+|||+|.||+.++..|+..|. +|.++|++++..+. +..... .........+.+.+++.++|+||++....
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~ 74 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH--EVQGWLRVPQPYCS----VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW 74 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSEEE----EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC--ceEEEEcCHHHhhh----hccccCCccccccccccchhhhhcccceEEEeeccc
Confidence 799999999999999999999988 99999997753332 111110 01111222344567889999999997321
Q ss_pred cCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch
Q psy12825 257 SLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD 298 (488)
Q Consensus 257 ~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd 298 (488)
-..+..+.+..+ .++.+|+.+.|=++
T Consensus 75 ----------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 75 ----------------QVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp ----------------GHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred ----------------chHHHHHhhccccCcccEEeeccCccc
Confidence 134456666655 57888888888654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.05 E-value=4.8e-06 Score=73.28 Aligned_cols=63 Identities=21% Similarity=0.370 Sum_probs=50.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||.|.||..+|..|+.+|+ +|..||+++++++... +. ......++ +.++++|+||++.
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~--~V~~~d~~~~~~~~~~----~~-------~~~~~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVSDRNPEAIADVI----AA-------GAETASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHH----HT-------TCEECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEehhHHHHHHHHHHHHCCC--eEEEEeCCcchhHHHH----Hh-------hhhhcccHHHHHhCCCeEEEEc
Confidence 699999999999999999999998 8999999988766432 21 11223455 5789999999996
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.04 E-value=3.3e-07 Score=80.50 Aligned_cols=42 Identities=21% Similarity=0.462 Sum_probs=35.9
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
..||+|||+|+||.++||+++++++++|++++| +++.++.+|
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D 50 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD 50 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc
Confidence 469999999999999999999999999999998 444555444
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.02 E-value=4.7e-07 Score=79.35 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=35.6
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
+.||+|||+|+||+++||.+..+++++|++++| +++.++.+|
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D 49 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD 49 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH
Confidence 459999999999999999999999999999999 344444433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.00 E-value=3.5e-07 Score=80.25 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=35.7
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
.||+|||+|+||+++||.++.+++++|++++| +++.++.+|
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~D 45 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID 45 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHh
Confidence 59999999999999999999999999999999 555555544
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.92 E-value=1.1e-05 Score=72.81 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=71.2
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC-------CCCCCcEEEcCCc-cccCCCcEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP-------FLRSPKIESGSDI-AMSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~-------~~~~~~v~~ttd~-eal~dADiV 249 (488)
|||+|||.|.+|..+|..++ ++. +|+.||+|+++++.+.....+... .....++..+++. .+..++|++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~--~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii 77 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELV 77 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEE
T ss_pred CEEEEECCChhHHHHHHHHH-CCC--cEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccc
Confidence 79999999999999887664 565 999999999877653211110000 0013345555554 678999999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe-CCchhHHHHHH
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS-NPVDVLTYISW 305 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T-NPvdi~t~~~~ 305 (488)
+++...+........ ....+....+.+....+..++++-| =|....-++..
T Consensus 78 ~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~ 129 (196)
T d1dlja2 78 IIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQ 129 (196)
T ss_dssp EECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHH
T ss_pred cccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEeeeecCceeeeeeee
Confidence 999766543211111 1234444555555556666555544 34554444433
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.88 E-value=7.7e-06 Score=71.47 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=50.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||+|.||++++..|...+. ++.++|++.++++.....+. +..+.+. +.+++||+||+++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~--~i~v~~r~~~~~~~l~~~~g----------~~~~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPH--ELIISGSSLERSKEIAEQLA----------LPYAMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSC--EEEEECSSHHHHHHHHHHHT----------CCBCSSHHHHHHTCSEEEECS
T ss_pred CEEEEEeccHHHHHHHHHHHhCCC--eEEEEcChHHhHHhhccccc----------eeeechhhhhhhccceeeeec
Confidence 699999999999999999987765 89999999888775544332 1123455 5688999999996
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.88 E-value=7.4e-07 Score=77.43 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=36.0
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
.||+|||+|+||+++||.++.+++++|++++| +++.++.+|
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~D 44 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALD 44 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcc
Confidence 39999999999999999999999999999988 556555555
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.84 E-value=9e-07 Score=77.16 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=34.9
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
.||+|||+|+||.++||.++++++++|++++| ++..++.+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alD 44 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD 44 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHH
Confidence 49999999999999999999999999999998 344454443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.83 E-value=1.2e-06 Score=76.36 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=33.6
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
++||+|||+|+||+++||.+.+++++ |++++| ++..++.+|
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~D 44 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALD 44 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHH
Confidence 46999999999999999999999998 588888 444444444
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.80 E-value=2.2e-05 Score=69.00 Aligned_cols=64 Identities=19% Similarity=0.349 Sum_probs=50.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||+|||.|.||..+|..|+.+++ +|..||++.++.+. +.... . ....++ +.++++|+|+++.
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~--~v~~~d~~~~~~~~----~~~~~------~-~~~~~~~e~~~~~diii~~v 65 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGY--LLNVFDLVQSAVDG----LVAAG------A-SAARSARDAVQGADVVISML 65 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSSHHHHHH----HHHTT------C-EECSSHHHHHTSCSEEEECC
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCC--eEEEEECchhhhhh----hhhhh------c-cccchhhhhccccCeeeecc
Confidence 4699999999999999999999998 99999999876553 22211 1 123344 7899999999986
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.74 E-value=1.6e-06 Score=75.58 Aligned_cols=42 Identities=38% Similarity=0.552 Sum_probs=35.3
Q ss_pred CcEEEEe-cchhHHHHHHHHHhhhhHHHHHHHH-----HHHHhhhCCC
Q psy12825 131 QKITVVG-AGQVGMACTYSILTQTMARDAVSTV-----DRLLSQVAPS 172 (488)
Q Consensus 131 ~ki~vvg-~g~vg~~~a~~~~~k~la~eivlid-----~~~~~e~~~~ 172 (488)
+||+||| +|+||.++||.++++++++|++++| +++.++.+|.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl 48 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADT 48 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecch
Confidence 5999999 6999999999999999999999988 3344555553
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.69 E-value=2e-06 Score=75.57 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=30.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 129 PDQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
|+.||+|||+|+||+++||.++.++++ |++++|
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~-el~L~D 34 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLG-DVVLFD 34 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCC-eEEEEe
Confidence 457999999999999999999999885 899998
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.59 E-value=4.6e-05 Score=64.42 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=63.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVI 250 (488)
|||.|+|+|.+|..++..|...+. +++++|.|+++++....++. ..+... +|. ..+.+||.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~~~--------~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAEID--------ALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCS--------SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhhhh--------hhhccCcccchhhhhhcChhhhhhhc
Confidence 799999999999999999988887 89999999998875433321 123221 232 3488999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.+... | ..|+- ++...+.++++.++..+.||..
T Consensus 71 ~~t~~---------d--~~N~~----~~~~~k~~~~~~iI~~~~~~~~ 103 (132)
T d1lssa_ 71 AVTGK---------E--EVNLM----SSLLAKSYGINKTIARISEIEY 103 (132)
T ss_dssp ECCSC---------H--HHHHH----HHHHHHHTTCCCEEEECSSTTH
T ss_pred ccCCc---------H--HHHHH----HHHHHHHcCCceEEEEecCHHH
Confidence 87421 1 23432 2333445677765655566654
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=97.56 E-value=0.00028 Score=62.24 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=49.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiVIit 252 (488)
.|||+|||.|.||..++..|+.+++ +|..||+++++++.......... .........+. ..+.+++.+++.
T Consensus 1 ~MkIGvIGlG~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 1 SMDVGVVGLGVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAP---FAGNLKAFETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTST---TGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred CCEEEEEeehHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccc---cccchhhhhhhhHHHHhcccceEEEEe
Confidence 3799999999999999999999998 89999999998876554443321 11223322221 345566666665
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 76 ~ 76 (178)
T d1pgja2 76 V 76 (178)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.52 E-value=0.00015 Score=64.17 Aligned_cols=94 Identities=12% Similarity=0.208 Sum_probs=62.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~-eal~dADiVIita 253 (488)
.+|+|||.|.||..+|..|+.+++ +|+.||+++++++....+-.. ......... . +.+.++|.+|++.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~ii~~~ 74 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGF--VVCAFNRTVSKVDDFLANEAK------GTKVLGAHSLEEMVSKLKKPRRIILLV 74 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTHHHHHHHHTTTT------TSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHHHHhccc------cccccchhhhhhhhhhhcccceEEEec
Confidence 579999999999999999999998 899999999877654332111 111112222 2 5688999999985
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhcc-CCCcEEEEEe
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKG-SPDCILLIIS 294 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~-~p~a~vIv~T 294 (488)
. +.+.+.++...+... .|..++|..|
T Consensus 75 ~---------------~~~~v~~v~~~l~~~~~~g~iiid~s 101 (176)
T d2pgda2 75 K---------------AGQAVDNFIEKLVPLLDIGDIIIDGG 101 (176)
T ss_dssp C---------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred C---------------chHHHHHHHHHHHhccccCcEEEecC
Confidence 2 123444455555554 4555555554
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.37 E-value=8.7e-06 Score=71.00 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=30.3
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+ |+||.++||.+..+++++|++++|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D 33 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIG 33 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCccccccccc
Confidence 38999996 999999999999999999999987
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.29 E-value=1.1e-05 Score=70.09 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=30.7
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~eivlid 162 (488)
+||+|||+ |+||.++||.+..+++++|++++|
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD 33 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD 33 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence 49999996 999999999999999999999999
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.28 E-value=0.0011 Score=58.49 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=56.4
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CCccccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SDIAMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td~eal~dADiVIi 251 (488)
...+.++|.|+|+|.++.++++.|...+ .+|++++++.++++..+..+.... .+... .+-..+.++|+||.
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~~------~~~~~~~~~~~~~~~diiIN 85 (171)
T d1p77a1 14 WLRPNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPYG------NIQAVSMDSIPLQTYDLVIN 85 (171)
T ss_dssp CCCTTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGGS------CEEEEEGGGCCCSCCSEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhcc------ccchhhhccccccccceeee
Confidence 3457789999999999999999988654 589999999999998877776432 22222 22235789999999
Q ss_pred ecc
Q psy12825 252 TAG 254 (488)
Q Consensus 252 tag 254 (488)
+..
T Consensus 86 ~tp 88 (171)
T d1p77a1 86 ATS 88 (171)
T ss_dssp CCC
T ss_pred ccc
Confidence 964
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.27 E-value=1.4e-05 Score=69.06 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=30.9
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.||+|||+|+||.++||.++.+++++|++++|
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~D 32 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLD 32 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence 39999999999999999999999999999999
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00058 Score=61.23 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=62.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
|.++||+|+|| |.+|++++..|+.+|. +|.+++++++++.. . .....++... +|. ++++++|
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~~~-------~--~~~~~~~~~gD~~d~~~l~~al~~~d 69 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPS-------E--GPRPAHVVVGDVLQAADVDKTVAGQD 69 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSCS-------S--SCCCSEEEESCTTSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhccc-------c--cccccccccccccchhhHHHHhcCCC
Confidence 56889999998 9999999999999987 99999998876431 1 1122344332 122 4799999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
+||.+++......... .+....+.+.+.+++..
T Consensus 70 ~vi~~~g~~~~~~~~~-----~~~~~~~~l~~aa~~~~ 102 (205)
T d1hdoa_ 70 AVIVLLGTRNDLSPTT-----VMSEGARNIVAAMKAHG 102 (205)
T ss_dssp EEEECCCCTTCCSCCC-----HHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccCCchhhhh-----hhHHHHHHHHHHHHhcC
Confidence 9999987532211111 22334455666666654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.25 E-value=2e-05 Score=69.25 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=33.9
Q ss_pred CCCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH---HHHHhhhCC
Q psy12825 129 PDQKITVVGAGQVGMACTYSILTQTMARDAVSTV---DRLLSQVAP 171 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid---~~~~~e~~~ 171 (488)
+++||+|||+|.||.++||.+..++++ |++++| +++.++.+|
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~D 50 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALD 50 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHH
Confidence 457999999999999999999999997 688988 344444433
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.19 E-value=0.00059 Score=58.69 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=46.1
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|||+|||.|.||+.++..|..+++ ++..+|.+.........+ .. .+. .+. +.+++||+||++.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~~~~---~~------~~~--~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERAR---TV------GVT--ETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHH---HH------TCE--ECCHHHHHTSSEEEECS
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCC--eEEEEcCchhHHHHHhhh---cc------ccc--ccHHHHHhhcCeEEEEe
Confidence 699999999999999999999987 899999866544322111 11 111 123 6789999999996
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.10 E-value=0.0013 Score=56.31 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=42.4
Q ss_pred CCceEEEEe-cccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 176 PDQKITVVG-AGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 176 ~~~KIaIIG-AG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
.++||+||| .|.||..++..|...|+ +|..+|++.+.... +.+.++|+++.+.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~~~~-----------------------~~~~~~~~v~~~~ 61 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWAVAE-----------------------SILANADVVIVSV 61 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGGGHH-----------------------HHHTTCSEEEECS
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEecccccccccc-----------------------hhhhhcccccccc
Confidence 467999999 79999999999999998 99999997643221 2356888888875
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.07 E-value=0.00032 Score=60.70 Aligned_cols=46 Identities=13% Similarity=0.345 Sum_probs=41.7
Q ss_pred ceEEEE-ecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc
Q psy12825 178 QKITVV-GAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG 225 (488)
Q Consensus 178 ~KIaII-GAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~ 225 (488)
|||+|| |+|.+|.++|..|+..|. +|+++++++++++....++...
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc
Confidence 799999 679999999999999998 9999999999999888888754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.99 E-value=0.00045 Score=60.50 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=69.9
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
..+.++|.|||+|.||..++..|...+. .++.++.++.++++.....+.. +.....++ +.+.++|+||.+
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~~--------~~~~~~~~~~~l~~~Divi~a 91 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLGG--------EAVRFDELVDHLARSDVVVSA 91 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHTC--------EECCGGGHHHHHHTCSEEEEC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhhc--------ccccchhHHHHhccCCEEEEe
Confidence 4567899999999999999999998875 4799999998888776665531 12112343 578999999999
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV 299 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi 299 (488)
.+.+..- .+. +.++...+ .++....-++|=++.|-|+
T Consensus 92 tss~~~i-i~~--------~~i~~~~~-~r~~~~~~~iiDlavPr~v 128 (159)
T d1gpja2 92 TAAPHPV-IHV--------DDVREALR-KRDRRSPILIIDIANPRDV 128 (159)
T ss_dssp CSSSSCC-BCH--------HHHHHHHH-HCSSCCCEEEEECCSSCSB
T ss_pred cCCCCcc-ccH--------hhhHHHHH-hcccCCCeEEEeecCCCCc
Confidence 7644211 111 12222111 1222334577888999764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.97 E-value=0.0019 Score=53.83 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=47.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVI 250 (488)
++++|+|+|.+|+.++..|...|. +++++|.|+++++.. .+. ...+... +++ ..+.+||.||
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~----~~~-----~~~~~~gd~~~~~~l~~a~i~~a~~vi 69 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAY----ASY-----ATHAVIANATEENELLSLGIRNFEYVI 69 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHT----TTT-----CSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHH----HHh-----CCcceeeecccchhhhccCCccccEEE
Confidence 479999999999999999999987 899999999877642 221 1122221 222 2488999988
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
++.
T Consensus 70 ~~~ 72 (134)
T d2hmva1 70 VAI 72 (134)
T ss_dssp ECC
T ss_pred EEc
Confidence 875
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.91 E-value=0.0014 Score=58.54 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=60.2
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCc
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSR 247 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dAD 247 (488)
...+.++|.|+|| |.+|..++..|+..|. +|+++|+++++++.....+..... ......-..|. +.+.++|
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~iD 94 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFK--VNVTAAETADDASRAEAVKGAH 94 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHT--CCCEEEECCSHHHHHHHTTTCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccc--hhhhhhhcccHHHHHHHhcCcC
Confidence 4667899999998 9999999999999997 899999999999877777765321 11111112332 4689999
Q ss_pred EEEEecccc
Q psy12825 248 IVIITAGVR 256 (488)
Q Consensus 248 iVIitag~~ 256 (488)
+||.+++.+
T Consensus 95 ilin~Ag~g 103 (191)
T d1luaa1 95 FVFTAGAIG 103 (191)
T ss_dssp EEEECCCTT
T ss_pred eeeecCccc
Confidence 999998753
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.85 E-value=0.0026 Score=55.60 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=51.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
..+.+||.|+|+|.++.++++.|...+. .+|.+++++.++.+.....+... .. +.....++|+||.+.
T Consensus 14 ~~~~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~~ka~~L~~~~~~~----------~~-~~~~~~~~DliINaT 81 (167)
T d1npya1 14 LNKNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALYGYA----------YI-NSLENQQADILVNVT 81 (167)
T ss_dssp CCTTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHHTCE----------EE-SCCTTCCCSEEEECS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccHHHHHHHHHhhhhh----------hh-hcccccchhhheecc
Confidence 3466899999999999999999988875 58999999999887655444221 11 112346799999986
Q ss_pred ccc
Q psy12825 254 GVR 256 (488)
Q Consensus 254 g~~ 256 (488)
...
T Consensus 82 piG 84 (167)
T d1npya1 82 SIG 84 (167)
T ss_dssp STT
T ss_pred ccC
Confidence 433
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.85 E-value=0.0012 Score=58.32 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC--c-cccCCCcEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD--I-AMSEGSRIV 249 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd--~-eal~dADiV 249 (488)
...++-||+|||+|.+|..-+.....-| ..+..+|.+.++++.....+... .......+ + +.+++||+|
T Consensus 28 ~gv~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~~------~~~~~~~~~~l~~~~~~aDiv 99 (168)
T d1pjca1 28 PGVKPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGSR------VELLYSNSAEIETAVAEADLL 99 (168)
T ss_dssp TTBCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGGG------SEEEECCHHHHHHHHHTCSEE
T ss_pred CCCCCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhccc------ceeehhhhhhHHHhhccCcEE
Confidence 3357899999999999987666555545 48999999999887654444322 22222222 2 579999999
Q ss_pred EEecccccC
Q psy12825 250 IITAGVRSL 258 (488)
Q Consensus 250 Iitag~~~k 258 (488)
|-++-.|.+
T Consensus 100 I~aalipG~ 108 (168)
T d1pjca1 100 IGAVLVPGR 108 (168)
T ss_dssp EECCCCTTS
T ss_pred EEeeecCCc
Confidence 999876643
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.82 E-value=0.00055 Score=59.08 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=48.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-C-C---c-cccCCCcEEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-S-D---I-AMSEGSRIVI 250 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-t-d---~-eal~dADiVI 250 (488)
.+||.|||||.||..+|..|+..|. +|+++|++.++++..+..+... .+... . + . +.+...|+++
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~--~V~v~dr~~~~a~~l~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~i 72 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI--KVTVACRTLESAKKLSAGVQHS-------TPISLDVNDDAALDAEVAKHDLVI 72 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC--EEEEEESCHHHHHHHHTTCTTE-------EEEECCTTCHHHHHHHHTTSSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECChHHHHHHHhccccc-------ccccccccchhhhHhhhhccceeE
Confidence 4799999999999999999999887 8999999998777544332211 11111 1 1 1 3477888888
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
.+.
T Consensus 73 ~~~ 75 (182)
T d1e5qa1 73 SLI 75 (182)
T ss_dssp ECS
T ss_pred eec
Confidence 764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.74 E-value=0.0049 Score=52.91 Aligned_cols=61 Identities=8% Similarity=0.196 Sum_probs=41.8
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
||++||.|.||..++..|+..+. .+ .++.+.++......+. . . .....+.+.++|++|++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~--~~-~~~~~~~~~~~~~~~~---~------~--~~~~~~~~~~~~~~i~~~ 62 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFP--TL-VWNRTFEKALRHQEEF---G------S--EAVPLERVAEARVIFTCL 62 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSC--EE-EECSSTHHHHHHHHHH---C------C--EECCGGGGGGCSEEEECC
T ss_pred eEEEEeHHHHHHHHHHHHHhCCC--EE-EEeCCHHHHHHHHHHc---C------C--cccccccccceeEEEecc
Confidence 89999999999999999987764 44 5666555444332222 1 1 122446788999999875
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=6.6e-05 Score=65.21 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=33.6
Q ss_pred CcEEEEe-cchhHHHHHHHHHhh-hhHHHHHHHH--HHHHhhhCC
Q psy12825 131 QKITVVG-AGQVGMACTYSILTQ-TMARDAVSTV--DRLLSQVAP 171 (488)
Q Consensus 131 ~ki~vvg-~g~vg~~~a~~~~~k-~la~eivlid--~~~~~e~~~ 171 (488)
.||+||| +|+||.++||.|..+ ++++|++++| +.+.++.+|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~D 45 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVD 45 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHH
Confidence 3999999 599999999999887 7999999998 444455444
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0022 Score=55.23 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=71.4
Q ss_pred CceEEEEec-ccchHHHHHHHHHcC--CCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQG--IYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~--l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
|+||+|+|| |.||+-+...|+... ...+++++..+... +.. +... .....+....+.++++++|++|++.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~--g~~--~~~~---~~~~~~~~~~~~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG--QAA--PSFG---GTTGTLQDAFDLEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT--SBC--CGGG---TCCCBCEETTCHHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc--ccc--cccc---CCceeeecccchhhhhcCcEEEEec
Confidence 469999999 999998887666653 24588888764321 100 1110 0112222234556799999999996
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch-------------hHHHHHHHh--cCCCCCcEEee
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD-------------VLTYISWKL--SGFPKNRVIGS 318 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd-------------i~t~~~~k~--sg~p~~rViG~ 318 (488)
+ .++-+++++.+.+...+. +++.|-.+ ++...+... -|+ +.++|.
T Consensus 74 ~----------------~~~s~~~~~~~~~~g~~~--~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~--~~~ig~ 133 (146)
T d1t4ba1 74 G----------------GDYTNEIYPKLRESGWQG--YWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI--RTFVGG 133 (146)
T ss_dssp C----------------HHHHHHHHHHHHHTTCCC--EEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC--CEEEEC
T ss_pred C----------------chHHHHhhHHHHhcCCCe--ecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC--ceEEec
Confidence 2 235566666666554443 34444433 333334322 233 578888
Q ss_pred cCChHHHHHHHHH
Q psy12825 319 GTNLDSMRFRVLL 331 (488)
Q Consensus 319 gt~lds~R~~~~l 331 (488)
..-+..|+-++|
T Consensus 134 -~~~~~~~~~~~~ 145 (146)
T d1t4ba1 134 -AAEPLRRMLRQL 145 (146)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -cCcHHHHHHHHh
Confidence 444444555554
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0043 Score=54.15 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=54.8
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
..+.++|.|+|||.++.++++.|...+. +|.+++++.++++..+..+.+.. .+...... ....++|+||.+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~~------~~~~~~~~~~~~~~~dliIN~ 86 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHTG------SIQALSMDELEGHEFDLIINA 86 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGGS------SEEECCSGGGTTCCCSEEEEC
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhcc------cccccccccccccccceeecc
Confidence 4567899999999999999999988876 79999999998887666655431 23332221 245689999998
Q ss_pred cc
Q psy12825 253 AG 254 (488)
Q Consensus 253 ag 254 (488)
..
T Consensus 87 Tp 88 (170)
T d1nyta1 87 TS 88 (170)
T ss_dssp CS
T ss_pred cc
Confidence 63
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.57 E-value=0.0022 Score=56.47 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=57.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
...+.++|.|+|+|.++.++++.|... .+|.+++++.++++..+.++...........+.. .++ ..+.++|++|.
T Consensus 14 ~~~~~k~vlIlGaGG~arai~~aL~~~---~~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dliIn 89 (177)
T d1nvta1 14 GRVKDKNIVIYGAGGAARAVAFELAKD---NNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIIIN 89 (177)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHTSS---SEEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEEE
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHccc---cceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh-hhhhhccchhhhhcc
Confidence 346778999999999999988887433 3899999999999988888876532111122332 344 46789999999
Q ss_pred ecccc
Q psy12825 252 TAGVR 256 (488)
Q Consensus 252 tag~~ 256 (488)
+...+
T Consensus 90 ~tp~g 94 (177)
T d1nvta1 90 ATPIG 94 (177)
T ss_dssp CSCTT
T ss_pred CCccc
Confidence 86543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.42 E-value=0.014 Score=53.99 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=91.4
Q ss_pred ceEE-EEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------------c
Q psy12825 178 QKIT-VVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------------A 241 (488)
Q Consensus 178 ~KIa-IIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------------e 241 (488)
+||+ |.|| +.+|..++..|+..|. .|++.|++++.++....++.+.- .. -+....|. +
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g---~~-~~~~~~Dv~~~~~v~~~~~~~~~ 74 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG---GH-AVAVKVDVSDRDQVFAAVEQARK 74 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CC-EEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---Cc-EEEEEeeCCCHHHHHHHHHHHHH
Confidence 5775 5587 8899999999999997 89999999999998888887642 11 11122231 2
Q ss_pred ccCCCcEEEEecccccC-C--Ccch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCc------hhHHHHHH
Q psy12825 242 MSEGSRIVIITAGVRSL-V--GETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPV------DVLTYISW 305 (488)
Q Consensus 242 al~dADiVIitag~~~k-~--G~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~~~~ 305 (488)
.+..-|++|..+|.... + ..+. ...+.-|+ -..+...+.+.+....+.|++++-.. +...|.+.
T Consensus 75 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as 154 (255)
T d1gega_ 75 TLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSS 154 (255)
T ss_dssp HTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHH
T ss_pred HhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhC
Confidence 36789999999986532 1 1222 22344443 34566677777777778777776332 23344444
Q ss_pred HhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 306 KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 306 k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
|.. + ..+-+.+|..++ +..|++-.+
T Consensus 155 Kaa---------l------~~ltk~lA~el~--~~gIrVN~I 179 (255)
T d1gega_ 155 KFA---------V------RGLTQTAARDLA--PLGITVNGY 179 (255)
T ss_dssp HHH---------H------HHHHHHHHHHHG--GGTEEEEEE
T ss_pred HHH---------H------HhhHHHHHHHhh--hhCcEEEEE
Confidence 421 1 235666777774 555665433
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00051 Score=62.94 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-----CCc-cccCCCc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-----SDI-AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-----td~-eal~dAD 247 (488)
|+.+||.|+|| |.+|++++..|+.++...+|.++++++...... ... ...+... .++ ++++++|
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~--~~~-------~i~~~~~D~~~~~~~~~~~~~~d 82 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE--AYK-------NVNQEVVDFEKLDDYASAFQGHD 82 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG--GGG-------GCEEEECCGGGGGGGGGGGSSCS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc--ccc-------eeeeeeecccccccccccccccc
Confidence 55679999999 999999999999998777899999865322110 000 1111111 122 5789999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCc
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDC 288 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a 288 (488)
+||.+++.... .....++...|......+++...+.....
T Consensus 83 ~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~v~~ 122 (232)
T d2bkaa1 83 VGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCKH 122 (232)
T ss_dssp EEEECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCCE
T ss_pred ccccccccccc-ccchhhhhhhcccccceeeecccccCccc
Confidence 99998864321 11233445567777777777776665444
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0047 Score=57.15 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=91.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-------ccccCCC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-------IAMSEGS 246 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-------~eal~dA 246 (488)
.+.+++.|+|| +.+|..++..|+..|. +|++.|++++.++....++.....+ ...+ +| .+.+..-
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~--~~Dv---~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPV--CVDL---GDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEE--ECCT---TCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEE--EEeC---CCHHHHHHHHHHhCCc
Confidence 46678999998 8999999999999997 8999999999888776666432100 0000 12 1467789
Q ss_pred cEEEEecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc------hhHHHHHHHhcCC
Q psy12825 247 RIVIITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV------DVLTYISWKLSGF 310 (488)
Q Consensus 247 DiVIitag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~~~~k~sg~ 310 (488)
|++|..++..... ..+. ...+..|+. +.+.+.+.+.+....+.||+++--. +...|...|..
T Consensus 78 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaa-- 155 (244)
T d1pr9a_ 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGA-- 155 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHH--
T ss_pred eEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhhHHH--
Confidence 9999998865321 1122 223444433 4566666655544556677775322 23344443321
Q ss_pred CCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 311 PKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 311 p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
...+-+.+|..++ +..|++-.+
T Consensus 156 -------------l~~lt~~lA~el~--~~gIrvN~I 177 (244)
T d1pr9a_ 156 -------------LDMLTKVMALELG--PHKIRVNAV 177 (244)
T ss_dssp -------------HHHHHHHHHHHHG--GGTEEEEEE
T ss_pred -------------HHHHHHHHHHHhC--CCcEEEEEE
Confidence 1245667777774 555665444
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.31 E-value=0.00073 Score=57.78 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=39.6
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
|.+||+|.||++++..|..+.. .+.+++++.++++......... ..+..++++.+|+||+++
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~--~~~v~~R~~~~~~~l~~~~~~~----------~~~~~~~~~~~DiVil~v 63 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYE--IGYILSRSIDRARNLAEVYGGK----------AATLEKHPELNGVVFVIV 63 (153)
T ss_dssp CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHTCCC----------CCSSCCCCC---CEEECS
T ss_pred EEEEeCcHHHHHHHHHHHhCCC--EEEEEeCChhhhcchhhccccc----------ccchhhhhccCcEEEEec
Confidence 6899999999999887744332 3357999998887654433211 123346789999999996
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.025 Score=47.90 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=65.6
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiV 249 (488)
+-+|.|+|.|.+|..++..|...+. +++++|.+++.......++... ...+... +|+ ..+.+||.|
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~-----~~~vi~Gd~~d~~~L~~a~i~~a~~v 75 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD-----NADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT-----TCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcC-----CcEEEEccCcchHHHHHhccccCCEE
Confidence 4579999999999999999988886 8999999987665555554321 1233332 232 358899999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe-CCch
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS-NPVD 298 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T-NPvd 298 (488)
|++.+. | ..|+. ++..+++++|+..++.-+ +|.+
T Consensus 76 i~~~~~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 110 (153)
T d1id1a_ 76 LALSDN---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSKN 110 (153)
T ss_dssp EECSSC---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred EEcccc---------H--HHHHH----HHHHHHHhCCCCceEEEEcCHHH
Confidence 998521 1 13333 344556677876665555 4443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.012 Score=52.05 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=52.2
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhH---H------------HHHHHHHhhcCCCCCCCcEEEc
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDR---C------------KGEMLDLQHGAPFLRSPKIESG 237 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~---l------------~g~~~dL~~~~~~~~~~~v~~t 237 (488)
...+++||+|||+|..|...|..|+.+|+ ++.|||.++.. + ......+.+... ....++...
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~--~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~-~~gV~i~l~ 115 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGH--QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIE-VTGVTLKLN 115 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHH-HHTCEEEES
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhcc--ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhh-cCCeEEEeC
Confidence 44567899999999999999999999998 99999985421 0 001111111100 012344443
Q ss_pred CC--ccccCCCcEEEEecccc
Q psy12825 238 SD--IAMSEGSRIVIITAGVR 256 (488)
Q Consensus 238 td--~eal~dADiVIitag~~ 256 (488)
++ .+...+.|.||++.|..
T Consensus 116 ~~Vt~~~~~~~d~vilAtG~~ 136 (179)
T d1ps9a3 116 HTVTADQLQAFDETILASGIP 136 (179)
T ss_dssp CCCCSSSSCCSSEEEECCCEE
T ss_pred CEEcccccccceeEEEeecCC
Confidence 33 24578999999998753
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0013 Score=51.94 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=50.9
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC-ccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD-IAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd-~eal~dADiVIita 253 (488)
.+.+||+|+|+|..|.++|..|...+. ++.++|.+++... ..++. ....+..... ...+.++|+||.+.
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~--~v~~~D~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~d~vi~SP 72 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLARGV--TPRVMDTRMTPPG--LDKLP------EAVERHTGSLNDEWLMAADLIVASP 72 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTC--CCEEEESSSSCTT--GGGSC------TTSCEEESBCCHHHHHHCSEEEECT
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCC--EEEEeeCCcCchh--HHHHh------hccceeecccchhhhccCCEEEECC
Confidence 467899999999999999999998886 8899998553111 11111 1233443333 24688999999998
Q ss_pred cccc
Q psy12825 254 GVRS 257 (488)
Q Consensus 254 g~~~ 257 (488)
|+|.
T Consensus 73 Gi~~ 76 (93)
T d2jfga1 73 GIAL 76 (93)
T ss_dssp TSCT
T ss_pred CCCC
Confidence 7663
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=96.14 E-value=0.041 Score=52.31 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=67.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC------c-cccCCCc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD------I-AMSEGSR 247 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd------~-eal~dAD 247 (488)
+.++|.|+|+ |.+|+.++..|+.+|. +|+...++.++............ ..........| + +++.++|
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~ 85 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY--PGRFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS--TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccc--cccccEEEeccccchhhhhhhcccch
Confidence 4589999999 9999999999999987 78777777765544322221111 11111112223 2 4789999
Q ss_pred EEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccC
Q psy12825 248 IVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGS 285 (488)
Q Consensus 248 iVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~ 285 (488)
.|+..+.... ...+...+...|+.-...+.+.+.++.
T Consensus 86 ~v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~ 122 (342)
T d1y1pa1 86 GVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP 122 (342)
T ss_dssp EEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhhhccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence 9998875432 233444555667777778888877763
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.13 E-value=0.006 Score=56.35 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=89.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-------cccCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-------AMSEG 245 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-------eal~d 245 (488)
+.+++.|+|+ +.+|..++..|+..|. +|++.|++++.++....++.... .... +|. +.+..
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~-------~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE-------PVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE-------EEECCTTCHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe-------EEEEeCCCHHHHHHHHHHcCC
Confidence 5678888898 8899999999999997 89999999988877666654321 1111 121 35778
Q ss_pred CcEEEEecccccCCC---cchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc------hhHHHHHHHhcC
Q psy12825 246 SRIVIITAGVRSLVG---ETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV------DVLTYISWKLSG 309 (488)
Q Consensus 246 ADiVIitag~~~k~G---~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~~~~k~sg 309 (488)
-|++|..+|...... .+.. ..+.-|+. +.+...+.+.+....+.+|+++-.. +...|.+.|..
T Consensus 75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaa- 153 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA- 153 (242)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHH-
T ss_pred CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccchHHH-
Confidence 999999998643211 1222 22333433 4556666655555556677765332 23344444421
Q ss_pred CCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 310 FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 310 ~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
+ ..+-+.+|..+ .|..|++-.+
T Consensus 154 --------l------~~lt~~lA~e~--~~~gIrvN~I 175 (242)
T d1cyda_ 154 --------M------TMLTKAMAMEL--GPHKIRVNSV 175 (242)
T ss_dssp --------H------HHHHHHHHHHH--GGGTEEEEEE
T ss_pred --------H------HHHHHHHHHHh--CccCeecccC
Confidence 1 24566677776 4555665444
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.045 Score=50.35 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=78.7
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc---------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI--------- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~--------- 240 (488)
+....+.|.|.|| +.+|..++..|+..|. .|++.|+++++++..+.++.... .......+ +|+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~ 77 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNREDIYSSAKK 77 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHH
Confidence 3456677888898 7899999999999997 89999999999998888887531 11111111 121
Q ss_pred --cccCCCcEEEEecccccCCCc--ch----HhhHhhh----HHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 241 --AMSEGSRIVIITAGVRSLVGE--TR----LQLVDRN----VKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 241 --eal~dADiVIitag~~~k~G~--~r----~dll~~N----~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
+.+..-|++|..+|....... .. .+++.-| .-..+.+.+.|.+.. .+.||+++-...
T Consensus 78 i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~ 146 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAG 146 (244)
T ss_dssp HHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-
T ss_pred HHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchh
Confidence 246679999999987543221 11 2233333 335567777776654 566777765443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.97 E-value=0.036 Score=51.10 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=75.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
.+.+.+.|.|| +.+|..++..|+..|. .|++.|++++.++....++... . ++. ...| .
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~----~--~~~~~~~Dv~~~~~v~~~~~~ 75 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP----D--QIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT----T--TEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC----C--cEEEEEccCCCHHHHHHHHHH
Confidence 45567777788 8899999999999997 8999999999888777666421 1 221 2222 1
Q ss_pred --cccCCCcEEEEecccccCC---CcchHh---hHhhhH----HHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 241 --AMSEGSRIVIITAGVRSLV---GETRLQ---LVDRNV----KIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 241 --eal~dADiVIitag~~~k~---G~~r~d---ll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+..-|++|..+|..... ..+..+ .+.-|+ -..+...+.|.+....+.||+++-.
T Consensus 76 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~ 143 (251)
T d1zk4a1 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI 143 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred HHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence 2356789999998864321 122222 334443 3567777778777666677777643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.023 Score=48.83 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcEE
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRIV 249 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADiV 249 (488)
..+..+|.|+|+|.+|...++.+...|. +++.+|.++++++ .+..+-. ..+.-+.+. ...++.|++
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga--~~i~~~~~~~~~~-~a~~lGa-------d~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAKRE-AAKALGA-------DEVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGGHH-HHHHHTC-------SEEEETTCHHHHHTTTTCEEEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccc--cchhhccchhHHH-HHhccCC-------cEEEECchhhHHHHhcCCCcee
Confidence 3456799999999999876666655565 6778999888775 3444421 122222221 356789999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
|.+++.+.. +-..++-..|.+.+++++-|.+
T Consensus 98 id~~g~~~~------------------~~~~~~~l~~~G~iv~~G~~~~ 128 (168)
T d1uufa2 98 LNTVAAPHN------------------LDDFTTLLKRDGTMTLVGAPAT 128 (168)
T ss_dssp EECCSSCCC------------------HHHHHTTEEEEEEEEECCCC--
T ss_pred eeeeecchh------------------HHHHHHHHhcCCEEEEeccCCC
Confidence 999764311 1122344567888888876654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.045 Score=50.55 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=77.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc------------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI------------ 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~------------ 240 (488)
.+.+.+.|+|| +.+|..+|..|+..|. .|++.|+++++++..+.++.... ...++.. ..|.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG---YPGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CSSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCceEEEEEccCCCHHHHHHHHHH
Confidence 34566788898 9999999999999997 89999999999998888887642 1223322 2221
Q ss_pred --cccCCCcEEEEecccccC-C--Ccch---HhhHhhh----HHHHHHHHHHHhccC-CCcEEEEEeC
Q psy12825 241 --AMSEGSRIVIITAGVRSL-V--GETR---LQLVDRN----VKIFKDLIPKIAKGS-PDCILLIISN 295 (488)
Q Consensus 241 --eal~dADiVIitag~~~k-~--G~~r---~dll~~N----~~ii~ei~~~I~~~~-p~a~vIv~TN 295 (488)
+.+..-|++|..++.... + ..+. ...+..| .-..+.+.+.+.+.. ..+.||+++-
T Consensus 83 ~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS 150 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS 150 (257)
T ss_dssp HHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred HHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 236678999999886432 1 1222 2223333 335677777776654 4677777753
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.035 Score=51.21 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcE-EEcCCc------------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKI-ESGSDI------------ 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v-~~ttd~------------ 240 (488)
.+.+.+.|.|| +.+|..++..|+..|. .|++.|++++.++....++.+... .++ ....|.
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~g----~~~~~~~~Dv~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYG----VETMAFRCDVSNYEEVKKLLEA 76 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhC----CcEEEEEccCCCHHHHHHHHHH
Confidence 45677888898 8899999999999997 899999999988877777765321 111 122221
Q ss_pred --cccCCCcEEEEecccccCCC---cchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEE
Q psy12825 241 --AMSEGSRIVIITAGVRSLVG---ETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLII 293 (488)
Q Consensus 241 --eal~dADiVIitag~~~k~G---~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~ 293 (488)
+.+..-|++|..+|...... .+.. ..+..|+ .+.+.+.+.|.+... +.+|++
T Consensus 77 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~i 140 (251)
T d1vl8a_ 77 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN-PSIINI 140 (251)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS-CEEEEE
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccc-cccccc
Confidence 23557999999998653321 1222 2334443 355667777766543 445555
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0082 Score=57.30 Aligned_cols=111 Identities=17% Similarity=0.270 Sum_probs=68.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccC--CCcE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSE--GSRI 248 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~--dADi 248 (488)
|||.|+|| |.+|+.++..|+..+. +|+.+|......+.....+.+.. .....+... +|+ +.++ ++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ 76 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDT 76 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCE
Confidence 78999999 9999999999999986 89999862111111111222211 011223221 233 2345 7899
Q ss_pred EEEecccccCC-C-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEE
Q psy12825 249 VIITAGVRSLV-G-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292 (488)
Q Consensus 249 VIitag~~~k~-G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv 292 (488)
||-+|+....+ . ....+.+..|+.-.+.+.+.++++....+|..
T Consensus 77 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~ 122 (338)
T d1udca_ 77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS 122 (338)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEec
Confidence 99987643211 0 12456678899988889999888865554433
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.79 E-value=0.013 Score=52.63 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHh-hhC-C-C--CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC
Q psy12825 153 TMARDAVSTVDRLLS-QVA-P-S--IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP 227 (488)
Q Consensus 153 ~la~eivlid~~~~~-e~~-~-~--~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~ 227 (488)
.+.+++-..|+...+ +.. . . .+...++|+|||.|.+|..++..+..=|. +|..||........ .+.
T Consensus 14 ~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~-----~~~-- 84 (197)
T d1j4aa1 14 RILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA--KVITYDIFRNPELE-----KKG-- 84 (197)
T ss_dssp HHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCHHHH-----HTT--
T ss_pred HHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcc--cccccCcccccccc-----cce--
Confidence 566777777765322 111 0 0 34567899999999999999888754454 89999986532111 111
Q ss_pred CCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 228 FLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 228 ~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
+ ...++ +.++.||+|++..
T Consensus 85 ~-------~~~~l~~~l~~sDii~~~~ 104 (197)
T d1j4aa1 85 Y-------YVDSLDDLYKQADVISLHV 104 (197)
T ss_dssp C-------BCSCHHHHHHHCSEEEECS
T ss_pred e-------eeccccccccccccccccC
Confidence 0 12344 4688999999986
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=95.75 E-value=0.012 Score=57.30 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=56.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
...++|||+|..+...+..+..--...+|.+||+++++.+..+.++... ....+....+. +++++||+|+.+.
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~----~g~~v~~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY----SGLTIRRASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC----TTCEEEECSSHHHHHTTCSEEEECC
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc----cCCCceecCCHHHHHhcCCceeecc
Confidence 3589999999998876666544333579999999999888888777642 23467777787 6899999998754
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.74 E-value=0.0081 Score=52.69 Aligned_cols=70 Identities=7% Similarity=0.071 Sum_probs=46.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc---cCCCcEEEEe
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM---SEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea---l~dADiVIit 252 (488)
.+||+|||+|.+|...+..+...+-. +|+ ++|+++++++....... ++ ......+|+++ -.+.|+|+++
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~----~~--~~~~~~~~~~~ll~~~~iD~v~I~ 73 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANN----YP--ESTKIHGSYESLLEDPEIDALYVP 73 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTT----CC--TTCEEESSHHHHHHCTTCCEEEEC
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccc----cc--cceeecCcHHHhhhccccceeeec
Confidence 36999999999999988877665422 544 78999987765433221 11 22234567754 2578999998
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 74 t 74 (184)
T d1ydwa1 74 L 74 (184)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.71 E-value=0.023 Score=50.66 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHHH-hhhCCC-------CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 152 QTMARDAVSTVDRLL-SQVAPS-------IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 152 k~la~eivlid~~~~-~e~~~~-------~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
-.+++.+...|.... ++.... ...+.++|+|||.|.+|+.++..+..-+. ++..||.......... .
T Consensus 14 L~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~---~ 88 (191)
T d1gdha1 14 LGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDM--DIDYFDTHRASSSDEA---S 88 (191)
T ss_dssp HHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHH---H
T ss_pred HHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcc--ccccccccccccchhh---c
Confidence 367788887775532 222110 34457899999999999998876654444 8999998554222211 1
Q ss_pred hcCCCCCCCcEEEcCCc-cccCCCcEEEEecccc-cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 224 HGAPFLRSPKIESGSDI-AMSEGSRIVIITAGVR-SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 224 ~~~~~~~~~~v~~ttd~-eal~dADiVIitag~~-~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
. ......++ +.++.||+|++..... ...++ + | .+.+....|++++||++--
T Consensus 89 ~--------~~~~~~~l~~ll~~sD~v~l~~plt~~T~~l-----i--~-------~~~l~~mk~~a~lIN~sRG 141 (191)
T d1gdha1 89 Y--------QATFHDSLDSLLSVSQFFSLNAPSTPETRYF-----F--N-------KATIKSLPQGAIVVNTARG 141 (191)
T ss_dssp H--------TCEECSSHHHHHHHCSEEEECCCCCTTTTTC-----B--S-------HHHHTTSCTTEEEEECSCG
T ss_pred c--------cccccCCHHHHHhhCCeEEecCCCCchHhhe-----e--c-------HHHhhCcCCccEEEecCCc
Confidence 1 11222355 4689999999985321 11111 1 1 1223445678999999743
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.71 E-value=0.0078 Score=53.64 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHH
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGE 218 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~ 218 (488)
...++-||.|||||.+|..-+.....-| ..|..+|+++++++.+
T Consensus 25 g~V~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l 68 (183)
T d1l7da1 25 GTVPPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQV 68 (183)
T ss_dssp EEECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHH
T ss_pred CCcCCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHH
Confidence 4456889999999999986555444334 4899999999888753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.68 E-value=0.037 Score=47.34 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC---Cc----cc-----
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS---DI----AM----- 242 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt---d~----ea----- 242 (488)
.+..+|.|+|+|.+|...++.+...|. +++.+|.++++++ .+.++... ..+.... +. +.
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~-~a~~~ga~------~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPRRLE-VAKNCGAD------VTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHH-HHHHTTCS------EEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcc--cccccchHHHHHH-HHHHcCCc------EEEeccccccccchhhhhhhccc
Confidence 345689999999999988777767775 8999999998886 34444311 1111111 11 11
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
=.++|+||.++|.+ ..+. ..++-..|.+.+++++.|.
T Consensus 96 g~g~D~vid~~g~~---------------~~~~---~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 96 GDLPNVTIDCSGNE---------------KCIT---IGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp SSCCSEEEECSCCH---------------HHHH---HHHHHSCTTCEEEECSCCS
T ss_pred ccCCceeeecCCCh---------------HHHH---HHHHHHhcCCceEEEecCC
Confidence 14689999997532 1112 2233346788888888664
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.63 E-value=0.018 Score=51.06 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHh-hhC----CCCCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCC
Q psy12825 153 TMARDAVSTVDRLLS-QVA----PSIESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAP 227 (488)
Q Consensus 153 ~la~eivlid~~~~~-e~~----~~~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~ 227 (488)
.+++.+...++.... ... .......++|+|+|.|.+|..++..+. .+.-+|..||......... +..
T Consensus 15 ~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~--~fg~~v~~~d~~~~~~~~~--~~~---- 86 (184)
T d1ygya1 15 AASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIA--AFGAYVVAYDPYVSPARAA--QLG---- 86 (184)
T ss_dssp HHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHH--TTTCEEEEECTTSCHHHHH--HHT----
T ss_pred HHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhh--hccceEEeecCCCChhHHh--hcC----
Confidence 566777766644311 110 114456789999999999999887664 3444999999865432221 110
Q ss_pred CCCCCcEEEcCCc-cccCCCcEEEEecccc-cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHH
Q psy12825 228 FLRSPKIESGSDI-AMSEGSRIVIITAGVR-SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISW 305 (488)
Q Consensus 228 ~~~~~~v~~ttd~-eal~dADiVIitag~~-~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~ 305 (488)
+.. .+. +.++.||+|++..... ...++ + |. +.+....|++++||++--.-+-...+.
T Consensus 87 ------~~~-~~l~ell~~sDiv~~~~Plt~~T~~l-----i--n~-------~~l~~mk~~a~lIN~sRG~iVde~aL~ 145 (184)
T d1ygya1 87 ------IEL-LSLDDLLARADFISVHLPKTPETAGL-----I--DK-------EALAKTKPGVIIVNAARGGLVDEAALA 145 (184)
T ss_dssp ------CEE-CCHHHHHHHCSEEEECCCCSTTTTTC-----B--CH-------HHHTTSCTTEEEEECSCTTSBCHHHHH
T ss_pred ------cee-ccHHHHHhhCCEEEEcCCCCchhhhh-----h--hH-------HHHhhhCCCceEEEecchhhhhhHHHH
Confidence 111 244 4689999999986321 11111 1 11 233445678999999844322233333
Q ss_pred HhcCCCCCcEEeec
Q psy12825 306 KLSGFPKNRVIGSG 319 (488)
Q Consensus 306 k~sg~p~~rViG~g 319 (488)
++ +..+++.|.+
T Consensus 146 ~a--L~~~~i~~a~ 157 (184)
T d1ygya1 146 DA--ITGGHVRAAG 157 (184)
T ss_dssp HH--HHTSSEEEEE
T ss_pred HH--HhcCcEeEEE
Confidence 32 2335666663
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0089 Score=52.64 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=52.7
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHH---HHHHHhhcCCCCCCCcEEEcCCc----cccCCC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKG---EMLDLQHGAPFLRSPKIESGSDI----AMSEGS 246 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g---~~~dL~~~~~~~~~~~v~~ttd~----eal~dA 246 (488)
..+.++|.|+|+|.++.++++.|...+. .+|++++++.++++. ....+.... .....+....+. +.+.++
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 91 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENT--DCVVTVTDLADQQAFAEALASA 91 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHS--SCEEEEEETTCHHHHHHHHHTC
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhhc--CcceEeeecccccchhhhhccc
Confidence 3467899999999999999999988874 589999998766654 333343321 111122222232 346899
Q ss_pred cEEEEecc
Q psy12825 247 RIVIITAG 254 (488)
Q Consensus 247 DiVIitag 254 (488)
|+||.+..
T Consensus 92 diiIN~Tp 99 (182)
T d1vi2a1 92 DILTNGTK 99 (182)
T ss_dssp SEEEECSS
T ss_pred ceeccccC
Confidence 99999964
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=95.61 E-value=0.009 Score=51.57 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=43.6
Q ss_pred ceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c-CCCcEEEEec
Q psy12825 178 QKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S-EGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l-~dADiVIita 253 (488)
+||+|||+|.+|.. ....+...+ ..+++++|.++++++....++... . ..+|+++ + .+.|+|+++.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-------~--~~~~~~~ll~~~iD~V~I~t 70 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRYRVS-------A--TCTDYRDVLQYGVDAVMIHA 70 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHTTCC-------C--CCSSTTGGGGGCCSEEEECS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhcccc-------c--ccccHHHhcccccceecccc
Confidence 69999999999965 344443332 238899999998887655444311 1 2346543 3 3789999985
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.61 E-value=0.041 Score=50.77 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+++.|.|| +.+|..++..|+..|. +|++.|++++.++....++.... +....| .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~-------~~~~~Dvt~~~~v~~~~~~~~ 74 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPAA-------CAIALDVTDQASIDRCVAELL 74 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTTE-------EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCce-------EEEEeeCCCHHHHHHHHHHHH
Confidence 4567778898 8999999999999997 89999999999988777774211 111112 1
Q ss_pred cccCCCcEEEEecccccCC---Ccch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 AMSEGSRIVIITAGVRSLV---GETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 eal~dADiVIitag~~~k~---G~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+..-|++|..+|..... ..+. ...+..|+ -+.+.+++.+.+....+.||+++-
T Consensus 75 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS 139 (256)
T d1k2wa_ 75 DRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMAS 139 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccc
Confidence 2355789999999865321 1122 23344554 345666776666655677877763
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.58 E-value=0.02 Score=50.62 Aligned_cols=111 Identities=11% Similarity=0.152 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHH-hhhCCC---CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC
Q psy12825 153 TMARDAVSTVDRLL-SQVAPS---IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF 228 (488)
Q Consensus 153 ~la~eivlid~~~~-~e~~~~---~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~ 228 (488)
.+++.+...+.... ++.... .....++|+|||.|.+|..++..+..-|. +|..+|++... .
T Consensus 14 ~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~--~v~~~d~~~~~----------~--- 78 (181)
T d1qp8a1 14 APYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGA--QVRGFSRTPKE----------G--- 78 (181)
T ss_dssp HHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTC--EEEEECSSCCC----------S---
T ss_pred HHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeecccc--ccccccccccc----------c---
Confidence 46667766664432 222111 34567899999999999999887765565 89999986421 0
Q ss_pred CCCCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 229 LRSPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 229 ~~~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
... ...++ +.+++||+|++.... .+ +...++ | .+.++...|++++||++-
T Consensus 79 --~~~--~~~~l~ell~~sDiv~~~~pl--~~--~t~~li--~-------~~~l~~mk~~ailIN~~R 129 (181)
T d1qp8a1 79 --PWR--FTNSLEEALREARAAVCALPL--NK--HTRGLV--K-------YQHLALMAEDAVFVNVGR 129 (181)
T ss_dssp --SSC--CBSCSHHHHTTCSEEEECCCC--ST--TTTTCB--C-------HHHHTTSCTTCEEEECSC
T ss_pred --cee--eeechhhhhhccchhhccccc--cc--cccccc--c-------cceeeeccccceEEeccc
Confidence 001 12355 569999999997521 11 111111 1 234455568899999873
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.47 E-value=0.042 Score=48.54 Aligned_cols=119 Identities=9% Similarity=0.069 Sum_probs=68.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|||.|.+|..++..+..-+. +|..+|....... ...+. .+....++ +.+++||+|++
T Consensus 40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~-~~~~~----------~~~~~~~l~~~l~~sD~v~~ 106 (188)
T d2naca1 40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDV--HLHYTDRHRLPES-VEKEL----------NLTWHATREDMYPVCDVVTL 106 (188)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTC--EEEEECSSCCCHH-HHHHH----------TCEECSSHHHHGGGCSEEEE
T ss_pred eeccccceeeccccccchhhhhhhhccCc--eEEEEeecccccc-ccccc----------cccccCCHHHHHHhccchhh
Confidence 34567899999999999998887755455 8999998532111 11111 12233455 56899999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeec
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~g 319 (488)
....... |-.++- .+.++...+++++||++--.-+-...+.++ +..+++.|.+
T Consensus 107 ~~plt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~ivd~~aL~~a--L~~g~i~ga~ 159 (188)
T d2naca1 107 NCPLHPE-----------TEHMIN--DETLKLFKRGAYIVNTARGKLCDRDAVARA--LESGRLAGYA 159 (188)
T ss_dssp CSCCCTT-----------TTTCBS--HHHHTTSCTTEEEEECSCGGGBCHHHHHHH--HHTTSEEEEE
T ss_pred ccccccc-----------chhhhH--HHHHHhCCCCCEEEecCchhhhhHHHHHHH--HhCCCceeEE
Confidence 8632111 111111 223344567899999975432223333332 2335666553
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.42 E-value=0.013 Score=51.27 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=45.0
Q ss_pred CCCceEEEEecccchHH-HHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c--CCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S--EGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l--~dADiV 249 (488)
|++.||+|||+|.+|.. .+..+....-..+|+ ++|.++++++....++.. .. ..+|+++ + .+.|+|
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-------~~--~~~~~~ell~~~~id~v 71 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-------PA--VFDSYEELLESGLVDAV 71 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-------CE--EESCHHHHHHSSCCSEE
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc-------cc--eeeeeecccccccccee
Confidence 56789999999999976 355554422222444 889999877654443321 12 3467743 3 478999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
+++.
T Consensus 72 ~I~t 75 (181)
T d1zh8a1 72 DLTL 75 (181)
T ss_dssp EECC
T ss_pred eccc
Confidence 9984
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.40 E-value=0.075 Score=49.01 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=90.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+.+.|.|| +.+|..++..|+..|. .|++.|++++.++....++.+.- .... ....| .
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g---~~~~-~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG---VEAR-SYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---SCEE-EEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEE-EEEccCCCHHHHHHHHHHHH
Confidence 4567788898 8899999999999997 89999999999988888886531 1111 11122 1
Q ss_pred cccCCCcEEEEecccccCCC----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc------hhHHHH
Q psy12825 241 AMSEGSRIVIITAGVRSLVG----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV------DVLTYI 303 (488)
Q Consensus 241 eal~dADiVIitag~~~k~G----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~~ 303 (488)
+.+..-|++|..+|.....+ .+. ...+..|+. ..+...+.+.+. ..+.||+++-.. +...|.
T Consensus 78 ~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~~~~~~~~~Y~ 156 (260)
T d1zema1 78 RDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGVKGPPNMAAYG 156 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHSCCTTBHHHH
T ss_pred HHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhhccCCcchHHHH
Confidence 23568999999988643211 222 223344433 456666666554 456677775322 223343
Q ss_pred HHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe
Q psy12825 304 SWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348 (488)
Q Consensus 304 ~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G 348 (488)
+.|.. ...+-+.+|..++ +..|++-.+-
T Consensus 157 asKaa---------------l~~ltk~lA~el~--~~gIrVN~I~ 184 (260)
T d1zema1 157 TSKGA---------------IIALTETAALDLA--PYNIRVNAIS 184 (260)
T ss_dssp HHHHH---------------HHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred HHHHH---------------HHHHHHHHHHHhh--hhCCEEEEec
Confidence 33321 1245667777774 5556654443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.39 E-value=0.041 Score=44.32 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCccccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDIAMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~eal~dADiVIita 253 (488)
.+.+||.|||+|.+|..-+..|+..|- +|++++.....- ...+.+. ...++.. .-+.+++.++++|+.+.
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga--~v~v~~~~~~~~---~~~~~~~----~~i~~~~~~~~~~dl~~~~lv~~at 80 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGA--RLTVNALTFIPQ---FTVWANE----GMLTLVEGPFDETLLDSCWLAIAAT 80 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTB--EEEEEESSCCHH---HHHHHTT----TSCEEEESSCCGGGGTTCSEEEECC
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCChH---HHHHHhc----CCceeeccCCCHHHhCCCcEEeecC
Confidence 457899999999999999999998886 889998754311 1122221 1112222 12236899999999884
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.021 Score=53.86 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=67.7
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
++||.|+|| |.+|+.++..|+.++. +|+.+|.. ....+ .+.+.... ....+.-.... ..+.++|+||-+|
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~----~~~~~~~~-~~~d~~~~~~~~~~~~~~d~VihlA 73 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKR----NVEHWIGH-ENFELINHDVVEPLYIEVDQIYHLA 73 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG----GTGGGTTC-TTEEEEECCTTSCCCCCCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCHH----HHHHhcCC-CceEEEehHHHHHHHcCCCEEEECc
Confidence 479999999 9999999999999887 89999862 21111 12221111 11222222222 3577999999887
Q ss_pred ccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE
Q psy12825 254 GVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII 293 (488)
Q Consensus 254 g~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~ 293 (488)
.....+ .....+.+..|+.....+.+.+.+... .+|.+
T Consensus 74 a~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~ 113 (312)
T d2b69a1 74 SPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLA 113 (312)
T ss_dssp SCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEE
T ss_pred ccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEE
Confidence 643211 123455677888888888888887653 34444
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.30 E-value=0.11 Score=47.91 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=90.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I---------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~---------- 240 (488)
+.+.+.|.|| +.+|..++..|+..|. +|++.|++++.++....++..... ..++. ...| .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~ 77 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAP---DAEVLTTVADVSDEAQVEAYVTAT 77 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCT---TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCC---CCeEEEEeccCCCHHHHHHHHHHH
Confidence 4466777798 8899999999999997 899999999999887777765421 22322 2223 1
Q ss_pred -cccCCCcEEEEecccccC--C--CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc------hhHHH
Q psy12825 241 -AMSEGSRIVIITAGVRSL--V--GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV------DVLTY 302 (488)
Q Consensus 241 -eal~dADiVIitag~~~k--~--G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~ 302 (488)
+.+..-|++|..+|.... + ..+.. ..+..|+. ..+.+.+.+.+.. .+.||+++-.. +...|
T Consensus 78 ~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~~~~~~~Y 156 (258)
T d1iy8a_ 78 TERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIRGIGNQSGY 156 (258)
T ss_dssp HHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSBCSSBHHH
T ss_pred HHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhccCCCCchHH
Confidence 235679999999985422 2 12222 23444433 4556666666554 45566665322 23444
Q ss_pred HHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe
Q psy12825 303 ISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348 (488)
Q Consensus 303 ~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G 348 (488)
...|.. + ..+-+.+|..++ +..|++-.+.
T Consensus 157 ~asKaa---------l------~~lt~~lA~el~--~~gIrVN~i~ 185 (258)
T d1iy8a_ 157 AAAKHG---------V------VGLTRNSAVEYG--RYGIRINAIA 185 (258)
T ss_dssp HHHHHH---------H------HHHHHHHHHHHG--GGTCEEEEEE
T ss_pred HHHHHH---------H------HHHHHHHHHHhC--ccCceEEEEe
Confidence 444431 2 235666777773 4556654443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.28 E-value=0.079 Score=48.91 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=73.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c---------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I--------- 240 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~--------- 240 (488)
..+.+++.|+|| +.+|..++..|+..|. +|++.|+++++++....++.... .. ...| .
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~------~~-~~~Dv~~~~~v~~~~~~ 72 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDAA------RY-QHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGGE------EE-EECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCce------EE-EEcccCCHHHHHHHHHH
Confidence 346778899998 8899999999999997 89999999998887766664321 11 1112 1
Q ss_pred --cccCCCcEEEEecccccCCC---cc---hHhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 --AMSEGSRIVIITAGVRSLVG---ET---RLQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 --eal~dADiVIitag~~~k~G---~~---r~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+..-|++|..+|...... .+ ....+..|+. ..+.+.+.+.+.. .+.||+++
T Consensus 73 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~is 137 (254)
T d1hdca_ 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNIS 137 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred HHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccc
Confidence 23567999999988643211 11 2233444433 4566666666554 56677776
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.27 E-value=0.0011 Score=57.97 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=29.1
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhH----HHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMA----RDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la----~eivlid 162 (488)
.||+|||+|+||++++|..+++..+ +|++++|
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~D 36 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYD 36 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEe
Confidence 3999999999999999999998887 5899888
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.25 E-value=0.0078 Score=53.81 Aligned_cols=34 Identities=15% Similarity=0.539 Sum_probs=30.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
+.+||+|||||.+|.+.|+.|+.++. +|.|+|.+
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~--~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGY--SVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCC--CEEEEeCC
Confidence 45699999999999999999999988 89999975
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=95.20 E-value=0.084 Score=48.81 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=72.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I---------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~---------- 240 (488)
.+.+.+.|+|| +.+|..++..|+..|. +|++.|+++++++....++.... .... ...| .
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~----~~~~-~~~Dv~~~~~v~~~~~~~ 76 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD----VISF-VHCDVTKDEDVRNLVDTT 76 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT----TEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC----ceEE-EEccCCCHHHHHHHHHHH
Confidence 45667888898 8899999999999997 89999999999988877775421 1111 1122 1
Q ss_pred -cccCCCcEEEEecccccC-C----CcchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 -AMSEGSRIVIITAGVRSL-V----GETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 -eal~dADiVIitag~~~k-~----G~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+..-|++|..+|.... + ..+.. ..+..|+ -..+...+.|.+.. .+.+|+++.
T Consensus 77 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss 143 (268)
T d2bgka1 77 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTAS 143 (268)
T ss_dssp HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECC
T ss_pred HHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccc
Confidence 235578999999986422 1 12222 2234443 35566777776654 445666653
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.17 E-value=0.026 Score=50.44 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=59.7
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIi 251 (488)
.....++|+|||.|.+|..++..+..-|. +|..||.....-.. ... .+....+++ -++.||+|++
T Consensus 45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~--~~~----------~~~~~~~l~~ll~~sD~i~~ 110 (193)
T d1mx3a1 45 ARIRGETLGIIGLGRVGQAVALRAKAFGF--NVLFYDPYLSDGVE--RAL----------GLQRVSTLQDLLFHSDCVTL 110 (193)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECTTSCTTHH--HHH----------TCEECSSHHHHHHHCSEEEE
T ss_pred eeeeCceEEEeccccccccceeeeecccc--ceeeccCcccccch--hhh----------ccccccchhhccccCCEEEE
Confidence 44567899999999999999887754454 99999985432111 111 122334664 5799999999
Q ss_pred ecccc-cCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 252 TAGVR-SLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 252 tag~~-~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..... ...++ -|. +.+....|++++||++-
T Consensus 111 ~~plt~~T~~l-------i~~-------~~l~~mk~~a~lIN~sR 141 (193)
T d1mx3a1 111 HCGLNEHNHHL-------IND-------FTVKQMRQGAFLVNTAR 141 (193)
T ss_dssp CCCCCTTCTTS-------BSH-------HHHTTSCTTEEEEECSC
T ss_pred eecccccchhh-------hhH-------HHHhccCCCCeEEecCC
Confidence 86321 11121 111 22344567899999874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.1 Score=44.68 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=60.0
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----c-----c
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----M-----S 243 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----a-----l 243 (488)
.+..+|.|+|+|.+|...++.+...+. ..|+..|+++++++ .+.++.- ..+... .+.. . =
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~-~a~~~Ga-------~~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLS-KAKEIGA-------DLVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHH-HHHHTTC-------SEEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHH-HHHHhCC-------cccccccccccccccccccccCC
Confidence 445689999999999987776666664 47999999998887 3444421 111111 1221 1 1
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
.++|+||.++|.+ ..+... +.-..|.+.+++++.|.+
T Consensus 96 ~g~Dvvid~~G~~---------------~~~~~a---~~~~~~gG~iv~~G~~~~ 132 (171)
T d1pl8a2 96 CKPEVTIECTGAE---------------ASIQAG---IYATRSGGTLVLVGLGSE 132 (171)
T ss_dssp SCCSEEEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCCS
T ss_pred CCceEEEeccCCc---------------hhHHHH---HHHhcCCCEEEEEecCCC
Confidence 3789999997532 122222 222346788888876643
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.0015 Score=57.74 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.1
Q ss_pred CCCcEEEEecchhHHHHHHH---HHhhhhH-HHHHHHH
Q psy12825 129 PDQKITVVGAGQVGMACTYS---ILTQTMA-RDAVSTV 162 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~---~~~k~la-~eivlid 162 (488)
|..||+|||+|+||+++++. +..+.+. +|++++|
T Consensus 1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~D 38 (171)
T d1obba1 1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMD 38 (171)
T ss_dssp CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEEC
T ss_pred CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEe
Confidence 45699999999999998752 3335554 5999988
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.10 E-value=0.093 Score=48.16 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=85.0
Q ss_pred eEE-EEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------cc
Q psy12825 179 KIT-VVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I-----------AM 242 (488)
Q Consensus 179 KIa-IIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~-----------ea 242 (488)
||+ |.|| +.+|..++..|+..|. +|++.|++++.++....++.+.- .... ....| + +.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g---~~~~-~~~~Dvs~~~~v~~~~~~~~~~ 76 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG---VEAD-GRTCDVRSVPEIEALVAAVVER 76 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEE-EEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEE-EEEeecCCHHHHHHHHHHHHHH
Confidence 665 5587 8899999999999997 89999999999998888887532 1111 11222 1 23
Q ss_pred cCCCcEEEEecccccCCC---cch---HhhHhhhHHHHHHHHHHHhcc-----CCCcEEEEEeCCc------hhHHHHHH
Q psy12825 243 SEGSRIVIITAGVRSLVG---ETR---LQLVDRNVKIFKDLIPKIAKG-----SPDCILLIISNPV------DVLTYISW 305 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~r---~dll~~N~~ii~ei~~~I~~~-----~p~a~vIv~TNPv------di~t~~~~ 305 (488)
+-.-|++|..+|...... .+. .+.+.-|+.-...+.+.+-++ ...+.||+++--. +...|.+.
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~as 156 (257)
T d2rhca1 77 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSAS 156 (257)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred hCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHH
Confidence 567999999998754211 122 233455544333333333221 2235566664221 23444444
Q ss_pred HhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 306 KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 306 k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
|.. + ..+-+.+|..++ +..|++-.+
T Consensus 157 Kaa---------l------~~ltk~lA~el~--~~gIrVN~I 181 (257)
T d2rhca1 157 KHG---------V------VGFTKALGLELA--RTGITVNAV 181 (257)
T ss_dssp HHH---------H------HHHHHHHHHHTT--TSEEEEEEE
T ss_pred HHH---------H------HHHHHHHHHHhh--hhCcEEEEE
Confidence 431 2 245667788774 556665433
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.09 E-value=0.069 Score=49.70 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=72.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I---------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~---------- 240 (488)
+.+.+.|.|| +.+|.+++..|+..|. .|++.|+++++++..+.++..... ...++. ...| .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGV--PAEKINAVVADVTEASGQDDIINTT 78 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--CCcceEEEEeeCCCHHHHHHHHHHH
Confidence 4567778888 8899999999999997 899999999999988888876421 112222 2223 1
Q ss_pred -cccCCCcEEEEecccccCCC-----cchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -AMSEGSRIVIITAGVRSLVG-----ETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~G-----~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+..-|++|..+|.....+ ++.. ..+.-|+. ..+...+.|.+. ..+.+++.+
T Consensus 79 ~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~ii~~s 144 (274)
T d1xhla_ 79 LAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSS 144 (274)
T ss_dssp HHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred HHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc-ccccccchh
Confidence 13457899999988643221 1222 22333433 456666666553 456566554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.1 Score=47.76 Aligned_cols=112 Identities=19% Similarity=0.142 Sum_probs=73.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc-------------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI------------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~------------- 240 (488)
+.+.+.|+|| +.+|..++..|+..|. +|++.|++.++++....++.... ...++. ...|.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF---EPQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS---CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhc---CCCcEEEEEeecCCHHHHHHHHHHH
Confidence 4566777798 8899999999999997 89999999999888777776532 112222 12231
Q ss_pred -cccCCCcEEEEecccccCCCcchHhhHhhhH----HHHHHHHHHHhccC--CCcEEEEEe
Q psy12825 241 -AMSEGSRIVIITAGVRSLVGETRLQLVDRNV----KIFKDLIPKIAKGS--PDCILLIIS 294 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~G~~r~dll~~N~----~ii~ei~~~I~~~~--p~a~vIv~T 294 (488)
+.+-.-|++|..++..... +..+.+..|+ ...+...+.|.+.. ..+.||+++
T Consensus 77 ~~~~G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~is 135 (254)
T d2gdza1 77 VDHFGRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS 135 (254)
T ss_dssp HHHHSCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred HHHcCCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeec
Confidence 2345789999999865432 2233333343 35566666666542 346677776
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.03 E-value=0.0081 Score=55.20 Aligned_cols=38 Identities=24% Similarity=0.548 Sum_probs=33.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
...+++||+|||||..|.+.|+.|+..|+ +|+|+|.++
T Consensus 26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~--~V~vlE~~~ 63 (370)
T d2iida1 26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH--QVTVLEASE 63 (370)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence 44567899999999999999999999997 899999754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.94 E-value=0.014 Score=54.04 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=72.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------cccCC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------AMSEG 245 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------eal~d 245 (488)
.+.+.+.|.|| +.+|..++..|+..|. +|++.|++++.++....++..... .....+.-..+. +.+..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSM-FVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEE-EECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeE-EEEeecCCHHHHHHHHHHHHHHhCC
Confidence 35566777788 8899999999999997 899999999998887777743210 000111000010 24567
Q ss_pred CcEEEEecccccCC---CcchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 246 SRIVIITAGVRSLV---GETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 246 ADiVIitag~~~k~---G~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
-|++|..+|..... ..+.. ..+.-|+ -..+...+.|++. .+.||+++-.
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~ 139 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASV 139 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCG
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccch
Confidence 89999999865321 12222 2234443 3456777777543 4777777643
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.89 E-value=0.015 Score=50.52 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=44.4
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEec
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIITA 253 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIita 253 (488)
|+++||+|||+|.+|..++..+....-..-+.++|.+++.. ....+....++ +.+.+.|+|+++.
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~--------------~~~~~~~~~~~~~~~~~~D~Vvi~t 66 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD--------------TKTPVFDVADVDKHADDVDVLFLCM 66 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS--------------SSSCEEEGGGGGGTTTTCSEEEECS
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc--------------cccccccchhhhhhccccceEEEeC
Confidence 56789999999999998887776543222345677775421 12344455565 4578999999985
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.021 Score=52.85 Aligned_cols=112 Identities=16% Similarity=0.190 Sum_probs=72.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------ea 242 (488)
.+.+.+.|.|| +.+|.+++..|+..|. +|++.|++++.++....++.+...+ ...+ +|. +.
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~--~~Dv---s~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFI--LCDV---TQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEE--ECCT---TSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEE--EccC---CCHHHHHHHHHHHHHh
Confidence 35677888898 8999999999999997 8999999999888776666542110 0000 111 23
Q ss_pred cCCCcEEEEecccccCCC----cchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 243 SEGSRIVIITAGVRSLVG----ETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 243 l~dADiVIitag~~~k~G----~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+..-|++|..+|....++ .+.. ..+.-|+ .+.+...+.|++. .+.||+++-
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS 138 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS 138 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCccccc
Confidence 567899999998543222 1222 2234443 3567777777654 356777763
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.089 Score=46.31 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=58.3
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
....++|+|||.|.+|..++..+..-+. +|..+|....... . ......++ +.++.||+|++.
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~--------------~-~~~~~~~l~ell~~sDii~i~ 103 (188)
T d1sc6a1 41 EARGKKLGIIGYGHIGTQLGILAESLGM--YVYFYDIENKLPL--------------G-NATQVQHLSDLLNMSDVVSLH 103 (188)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCCC--------------T-TCEECSCHHHHHHHCSEEEEC
T ss_pred cccceEEEEeecccchhhhhhhcccccc--eEeeccccccchh--------------h-hhhhhhhHHHHHhhccceeec
Confidence 3467899999999999998887655555 8999997542100 0 11222345 458999999998
Q ss_pred ccccc-CCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 253 AGVRS-LVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 253 ag~~~-k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
..... ..++ -| .+.++...+++++||++--
T Consensus 104 ~plt~~T~~l-------i~-------~~~l~~mk~~a~lIN~aRG 134 (188)
T d1sc6a1 104 VPENPSTKNM-------MG-------AKEISLMKPGSLLINASRG 134 (188)
T ss_dssp CCSSTTTTTC-------BC-------HHHHHHSCTTEEEEECSCS
T ss_pred ccCCcchhhh-------cc-------HHHHhhCCCCCEEEEcCcH
Confidence 63221 1111 11 1223445678999999744
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.1 Score=48.07 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=89.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+.+.|.|| +.+|..++..|+..|. .|++.|++++.++....++...- ... +....| .
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g---~~~-~~~~~Dvs~~~~~~~~~~~~~ 83 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG---GQA-FACRCDITSEQELSALADFAI 83 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT---CCE-EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC---CcE-EEEEccCCCHHHHHHHHHHHH
Confidence 4566777788 8899999999999997 89999999999988888887532 111 112222 1
Q ss_pred cccCCCcEEEEecccccC-C-CcchHh---hHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCc------hhHHHHHH
Q psy12825 241 AMSEGSRIVIITAGVRSL-V-GETRLQ---LVDRNV----KIFKDLIPKIAKGSPDCILLIISNPV------DVLTYISW 305 (488)
Q Consensus 241 eal~dADiVIitag~~~k-~-G~~r~d---ll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~~~~ 305 (488)
+.+..-|++|..+|.... + ..+..+ .+.-|+ -..+.+.+.+.+.. .+.||+++--. +...|.+.
T Consensus 84 ~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~~~~~~~~~Y~as 162 (255)
T d1fmca_ 84 SKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAENKNINMTSYASS 162 (255)
T ss_dssp HHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTCCCTTCHHHHHH
T ss_pred HHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchhccccccccchhH
Confidence 235689999999986532 1 223222 234443 34566677777664 34456654221 23344444
Q ss_pred HhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 306 KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 306 k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
|.. + ..+-+.+|..++ +..|++-.+
T Consensus 163 Kaa---------l------~~lt~~lA~el~--~~gIrVN~I 187 (255)
T d1fmca_ 163 KAA---------A------SHLVRNMAFDLG--EKNIRVNGI 187 (255)
T ss_dssp HHH---------H------HHHHHHHHHHHH--TTTEEEEEE
T ss_pred HHH---------H------HHHHHHHHHHhC--ccCeEEEEe
Confidence 431 1 245666777773 455665433
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.85 E-value=0.054 Score=44.07 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=29.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.++||+|||+|.+|.-+|..|...|. +|+|++..
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~--~Vtlv~~~ 54 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGI--DSYIFARG 54 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTC--EEEEECSS
T ss_pred CCCEEEEECCchHHHHHHHHHHhccc--cceeeehh
Confidence 36899999999999999998876665 99999973
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.14 Score=46.70 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc-----------cc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI-----------AM 242 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~-----------ea 242 (488)
+.+.+.|.|| +.+|..++..|+..|. .|++.|++++.++....++..... .+.. -+|. +.
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~~~-----~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGANGK-----GLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEE-----EEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCCCc-----EEEEEecCHHHhhhhhhhhhcc
Confidence 4456667788 8899999999999997 899999999999887777753210 0100 0111 24
Q ss_pred cCCCcEEEEecccccCCC---cch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEe
Q psy12825 243 SEGSRIVIITAGVRSLVG---ETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+..-|++|..++...... .+. ...+.-|+ ...+.+.+.|.+.. .+.||+++
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~is 136 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIG 136 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeec
Confidence 568999999987653321 122 22234443 35567777766643 46677776
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.81 E-value=0.001 Score=57.66 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=26.7
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH-----HHHHHH
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR-----DAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~-----eivlid 162 (488)
.||+|||+ |+||.++||.|..+.+.. +++++|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d 41 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLD 41 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEec
Confidence 59999995 999999999999888764 466665
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.021 Score=49.01 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=44.1
Q ss_pred CceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCcc-ccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIA-MSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~e-al~dADiVIita 253 (488)
++||+|||+|.+|.. ....+...+-..-+.++|.++++++....+.. +...++++ .+++.|+|+++.
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~D~V~I~t 69 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR----------IPYADSLSSLAASCDAVFVHS 69 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT----------CCBCSSHHHHHTTCSEEEECS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc----------ccccccchhhhhhcccccccc
Confidence 479999999999975 44555443323335689999988776554432 11234554 367999999984
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.78 E-value=0.11 Score=47.49 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=89.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I---------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~---------- 240 (488)
.+.+.+.|.|| +.+|..++..|+..|. +|++.|+++++++....++..... . ...| .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~------~-~~~Dv~~~~~v~~~~~~~ 74 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAAR------Y-VHLDVTQPAQWKAAVDTA 74 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEE------E-EECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcce------E-EEeecCCHHHHHHHHHHH
Confidence 45567778898 8899999999999997 899999999999888877754321 1 1112 1
Q ss_pred -cccCCCcEEEEecccccC-C--Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeCCc------hhHHHH
Q psy12825 241 -AMSEGSRIVIITAGVRSL-V--GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISNPV------DVLTYI 303 (488)
Q Consensus 241 -eal~dADiVIitag~~~k-~--G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~~ 303 (488)
+.+..-|++|..+|.... + ..+. .+.+.-|+. +.+...+.+.+. +.+.||+++-.. +...|.
T Consensus 75 ~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~~~~~~~~Y~ 153 (244)
T d1nffa_ 75 VTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLAGTVACHGYT 153 (244)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTSCCTTBHHHH
T ss_pred HHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccccccccccccccchh
Confidence 235678999999986432 1 1222 223444433 445566666654 346677776432 234454
Q ss_pred HHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeE
Q psy12825 304 SWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGF 345 (488)
Q Consensus 304 ~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~ 345 (488)
+.|.. + ..+-+.+|..++ +..|++-
T Consensus 154 asKaa---------l------~~ltk~lA~el~--~~gIrVN 178 (244)
T d1nffa_ 154 ATKFA---------V------RGLTKSTALELG--PSGIRVN 178 (244)
T ss_dssp HHHHH---------H------HHHHHHHHHHHG--GGTEEEE
T ss_pred hHHHH---------H------HHHHHHHHHHhc--ccCEEEE
Confidence 44431 2 235666777773 4556553
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=94.74 E-value=0.017 Score=52.40 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCCceEEEEecccchHH-HHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c--CCCcEE
Q psy12825 175 SPDQKITVVGAGQVGMA-CTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S--EGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l--~dADiV 249 (488)
.++.||+|||+|.+|.. +...+...+.. +|+ ++|+++++++.....+. .....+...+|+++ + ++.|+|
T Consensus 31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-----i~~~~~~~~~d~~ell~~~~iD~V 104 (221)
T d1h6da1 31 DRRFGYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-----VDPRKIYDYSNFDKIAKDPKIDAV 104 (221)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-----CCGGGEECSSSGGGGGGCTTCCEE
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-----cccccccccCchhhhcccccceee
Confidence 35679999999999964 44444333222 555 99999998876544432 11234555677754 4 368999
Q ss_pred EEec
Q psy12825 250 IITA 253 (488)
Q Consensus 250 Iita 253 (488)
+++.
T Consensus 105 ~I~t 108 (221)
T d1h6da1 105 YIIL 108 (221)
T ss_dssp EECS
T ss_pred eecc
Confidence 9985
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.68 E-value=0.013 Score=52.92 Aligned_cols=35 Identities=17% Similarity=0.407 Sum_probs=31.6
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
...||+|||||..|.+.|..|+..|+ +++++|.++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~--~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGV--DVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence 45799999999999999999999998 999999754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.098 Score=49.34 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c--------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I-------- 240 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~-------- 240 (488)
..+.+.+.|+|| +.+|..++..|+..|. .|++.|+++++++..+.++..........++. ...| .
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 356778888898 8899999999999997 89999999999998888887543211122332 2233 1
Q ss_pred ---cccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 ---AMSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 ---eal~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+..-|++|..++...... .+. ...+..|+. ..+.+.+.+.+... +.+|+++.
T Consensus 87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss 153 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIV 153 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECC
T ss_pred HHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccc
Confidence 12557899999987643211 121 223444433 45666666665543 44555543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.63 E-value=0.11 Score=47.83 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=73.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+++.|.|| +.+|..++..|+..|. +|++.|++++.++....++.+... ... .....| .
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~g--~~~-~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEFG--VKT-KAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHHT--CCE-EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhC--Cce-EEEEccCCCHHHHHHHHHHHH
Confidence 4567788898 8899999999999997 899999998888777777654311 111 111222 1
Q ss_pred cccCCCcEEEEecccccC-C--CcchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 AMSEGSRIVIITAGVRSL-V--GETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 eal~dADiVIitag~~~k-~--G~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+..-|++|..++.... + ..+.. +.+..|+ -..+.+.+.+.+....+.+++.+
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~ 146 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTS 146 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEee
Confidence 245689999999876432 1 11222 2344443 35577777776666666666654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.59 E-value=0.096 Score=48.54 Aligned_cols=114 Identities=12% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I---------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~---------- 240 (488)
+.+.+.|+|| +.+|..++..|+..|. +|++.|+++++++....++.+... ...++. ...| .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGV--SEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC--CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCCceEEEEccCCCHHHHHHHHHHH
Confidence 4466777788 8899999999999997 899999999999988888876421 112222 2222 1
Q ss_pred -cccCCCcEEEEecccccCC--C-----cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -AMSEGSRIVIITAGVRSLV--G-----ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~--G-----~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+..-|++|..+|..... . ++. ...+.-|+. ..+...+.|.+. +..+|++.|
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S 147 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS 147 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred HHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence 2345789999999865321 1 111 122334433 456666666553 445555544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.58 E-value=0.23 Score=45.50 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=71.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I---------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~---------- 240 (488)
.+.+.+.|.|| +.+|..++..|+..|. +|++.|+++++++....++.... ..... ...| .
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g---~~~~~-~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG---FKVEA-SVCDLSSRSERQELMNTV 79 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CEEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCceE-EEeeCCCHHHHHHHHHHH
Confidence 35677888898 8899999999999997 89999999999988888876531 11111 1122 1
Q ss_pred -cccC-CCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -AMSE-GSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -eal~-dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+. .-|++|..+|...... .+. ...+.-|+. +.+...+.+.+. ..+.||+++
T Consensus 80 ~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~is 144 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFIS 144 (259)
T ss_dssp HHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEEC
T ss_pred HHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-ccccccccc
Confidence 1244 4799999998653321 222 223444443 345555555544 346666665
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.51 E-value=0.15 Score=47.29 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=56.5
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc------------
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI------------ 240 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~------------ 240 (488)
..+.+.+.|.|| |.+|.+++..|+..|. +|++.|++.++++..+.++..... .. ......|.
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~g--~~-~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQTG--NK-VHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS--SC-EEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhcC--Cc-eEEEEecccChHHHHHHhhh
Confidence 445567778887 9999999999999997 899999999998888877765321 11 11111221
Q ss_pred --cccCCCcEEEEeccccc
Q psy12825 241 --AMSEGSRIVIITAGVRS 257 (488)
Q Consensus 241 --eal~dADiVIitag~~~ 257 (488)
+.+...|++|..+|...
T Consensus 97 ~~~~~g~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAGNF 115 (294)
T ss_dssp HHHHTCSCSEEEECCCCCC
T ss_pred hhhhccccchhhhhhhhcc
Confidence 23567899999987643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.51 E-value=0.13 Score=47.37 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=89.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHHHHHHHhhcCCCCCCCcEE-EcCC---c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKGEMLDLQHGAPFLRSPKIE-SGSD---I-------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~-------- 240 (488)
.+.+.+.|+|| +.+|..++..|+..|. +|++.|++. +.++....++...- .++. ...| .
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g-----~~~~~~~~Dvt~~~~v~~~~~ 77 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG-----GEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT-----CEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC-----CcEEEEEccCCCHHHHHHHHH
Confidence 34566777787 8899999999999997 899999864 56776667776531 1221 1222 1
Q ss_pred ---cccCCCcEEEEecccccCCC---cchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCch------hHH
Q psy12825 241 ---AMSEGSRIVIITAGVRSLVG---ETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPVD------VLT 301 (488)
Q Consensus 241 ---eal~dADiVIitag~~~k~G---~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t 301 (488)
+.+..-|++|..+|...... .+.. ..+..|+ -..+...+.|.+......|++++-... ...
T Consensus 78 ~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~ 157 (261)
T d1geea_ 78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVH 157 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHH
T ss_pred HHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccccc
Confidence 23457899999998653211 2222 2344443 356777787877665666776653322 233
Q ss_pred HHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 302 YISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 302 ~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
|...|.. + ..+-+.+|..++ +..|++-.+
T Consensus 158 Y~asKaa---------l------~~lt~~lA~e~~--~~gIrVN~I 186 (261)
T d1geea_ 158 YAASKGG---------M------KLMTETLALEYA--PKGIRVNNI 186 (261)
T ss_dssp HHHHHHH---------H------HHHHHHHHHHHG--GGTCEEEEE
T ss_pred cccCCcc---------c------hhhHHHHHHHhh--hhCcEEEEE
Confidence 4443321 1 345666777773 455665444
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.49 E-value=0.025 Score=51.98 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=67.8
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------ccc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AMS 243 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------eal 243 (488)
+.+++.|.|| +.+|..++..|+..|. +|++.|++++.++....++.... ....+ +|+ +.+
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~---~~~Dv---~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHP---VVMDV---ADPASVERGFAEALAHL 75 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEE---EECCT---TCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeE---EEEec---CCHHHHHHHHHHHHHhc
Confidence 4567888898 8899999999999997 89999999988876554443110 00000 111 235
Q ss_pred CCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 244 EGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 244 ~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
..-|++|..+|...... .+. ...+.-|+. ..+.+.+.+.+.. ...+++.+
T Consensus 76 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~s 135 (242)
T d1ulsa_ 76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTA 135 (242)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEEC
T ss_pred CCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeec
Confidence 57899999998754321 222 223444543 4566666666543 34444443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.48 E-value=0.14 Score=46.87 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=72.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+.+.|+|| +.+|..++..|+..|. .|+++|++++.++..+.++...- ... .....| .
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g---~~~-~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG---YES-SGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT---CCE-EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC---CcE-EEEEccCCCHHHHHHHHHHHH
Confidence 3445556688 8899999999998886 89999999999998888886531 111 112222 1
Q ss_pred cccCCCcEEEEecccccCC---Ccch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 AMSEGSRIVIITAGVRSLV---GETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 eal~dADiVIitag~~~k~---G~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+..-|++|..++..... ..+. ...+.-|+ -..+...+.+.+.. .+.||+++-
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS 146 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS 146 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECC
Confidence 2356899999998764332 1222 22233443 34566666766654 466777763
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.47 E-value=0.13 Score=46.47 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC----ccccCCCcEE
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD----IAMSEGSRIV 249 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd----~eal~dADiV 249 (488)
++.+++.|+|| +.+|..++..|+..|. +|++.|++++.++.. .+... .+.+ +.+ .+.+..-|++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~l~~~----~~~~~---~~Dv--~~~~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEELLKRS----GHRYV---VCDL--RKDLDLLFEKVKEVDIL 70 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHT----CSEEE---ECCT--TTCHHHHHHHSCCCSEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHhc----CCcEE---Ecch--HHHHHHHHHHhCCCcEE
Confidence 35678899998 8899999999999997 899999998766532 11100 0000 111 1468889999
Q ss_pred EEecccccCCC---cchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLVG---ETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~G---~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|..+|.+.... .+.. ..+..|+. +.+.+.+.+.+.. .+.+|+++
T Consensus 71 VnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~ 124 (234)
T d1o5ia_ 71 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT 124 (234)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred EecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccc
Confidence 99998654321 2222 22333433 4566666666544 45566655
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.45 E-value=0.013 Score=52.32 Aligned_cols=34 Identities=26% Similarity=0.675 Sum_probs=30.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+||+|||||..|.+.|+.|+..|+ +|+++|.++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~--~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGL--NVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence 3799999999999999999999888 899999743
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.33 E-value=0.04 Score=52.90 Aligned_cols=71 Identities=8% Similarity=-0.012 Sum_probs=53.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEec
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIita 253 (488)
...++|||+|..+...+..+..--...+|.+|++++++.+..+.++.+.. ..+. ....+++.+||+|+.+.
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~-----~~~~-~~~~~a~~~aDiV~taT 195 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG-----ISAS-VQPAEEASRCDVLVTTT 195 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT-----CCEE-ECCHHHHTSSSEEEECC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC-----Cccc-cchhhhhccccEEEEec
Confidence 35899999999998877766554346799999999999998888887642 2232 23347899999998764
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.06 Score=43.50 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=29.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
++||+|||+|.+|.-+|..|...|. ++.+++..+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~--~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGA--KTHLFEMFD 54 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred CCEEEEECCChhhHHHHHHhhcccc--EEEEEeecc
Confidence 5799999999999999999988776 999998743
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.30 E-value=0.092 Score=40.88 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=50.8
Q ss_pred ceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecccc
Q psy12825 178 QKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAGVR 256 (488)
Q Consensus 178 ~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag~~ 256 (488)
|||-+||-|.+|.+ +|..|..+|. .|.-.|..+... ...|++. ..++...-+.+.++++|+||.+..++
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~--~VsGSD~~~~~~---t~~L~~~-----Gi~i~~gh~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGN--DVYGSNIEETER---TAYLRKL-----GIPIFVPHSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSSCCHH---HHHHHHT-----TCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCC--eEEEEeCCCChh---HHHHHHC-----CCeEEeeecccccCCCCEEEEecCcC
Confidence 78999999988986 7888888888 899999976422 2335543 23454444567799999999997665
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.27 E-value=0.11 Score=40.77 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=51.8
Q ss_pred CCceEEEEecccchHH-HHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEecc
Q psy12825 176 PDQKITVVGAGQVGMA-CTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIITAG 254 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~-ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIitag 254 (488)
+.+||-+||.|.+|.+ +|..|..+|+ +|.-.|...... ...+.+. ...+....+.+.++++|+||.+.+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~--~VsGSD~~~~~~---~~~L~~~-----Gi~v~~g~~~~~i~~~d~vV~S~A 76 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGY--QISGSDIADGVV---TQRLAQA-----GAKIYIGHAEEHIEGASVVVVSSA 76 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTC--EEEEEESCCSHH---HHHHHHT-----TCEEEESCCGGGGTTCSEEEECTT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCC--EEEEEeCCCChh---hhHHHHC-----CCeEEECCccccCCCCCEEEECCC
Confidence 5679999999888966 6888888898 999999865322 2344432 234555445577999999999976
Q ss_pred cc
Q psy12825 255 VR 256 (488)
Q Consensus 255 ~~ 256 (488)
++
T Consensus 77 I~ 78 (96)
T d1p3da1 77 IK 78 (96)
T ss_dssp SC
T ss_pred cC
Confidence 65
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=94.27 E-value=0.06 Score=50.04 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=68.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCC--CcE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEG--SRI 248 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~d--ADi 248 (488)
||.|+|| |.+|++++..|+.++. +|+.+|. ...........+... ...++... +|. +++++ .|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~----~~~~~i~~Di~~~~~l~~~~~~~~~d~ 75 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDIRNKNDVTRLITKYMPDS 75 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc----CCcEEEEcccCCHHHHHHHHHhcCCce
Confidence 8999999 9999999999999987 8999984 221111122222221 12233322 222 23444 499
Q ss_pred EEEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 249 VIITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 249 VIitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
||-++....... ....+.+..|+.--..+.+...+....-.++..|
T Consensus 76 Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS 123 (338)
T d1orra_ 76 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 123 (338)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EEeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 999875432211 1235566778888888888888876666555555
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.022 Score=49.67 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=60.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
.....++++|+|.|.+|..+|..+...+. .|..+|+++.++-...+ +. .++ ..-.+++..+|+||.+
T Consensus 20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A~~---dG------~~v--~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAGKVAVVAGYGDVGKGCAQALRGFGA--RVIITEIDPINALQAAM---EG------YEV--TTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH---TT------CEE--CCHHHHTTTCSEEEEC
T ss_pred ceecCCEEEEeccccccHHHHHHHHhCCC--eeEeeecccchhHHhhc---Cc------eEe--eehhhhhhhccEEEec
Confidence 45578899999999999999998876665 99999999854322221 11 111 1223689999999888
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.|... ++. .+.+++..+.+++.|++
T Consensus 87 TGn~~---------------vI~--~eh~~~MKdgaIL~N~G 111 (163)
T d1li4a1 87 TGCID---------------IIL--GRHFEQMKDDAIVCNIG 111 (163)
T ss_dssp SSCSC---------------SBC--HHHHTTCCTTEEEEECS
T ss_pred CCCcc---------------chh--HHHHHhccCCeEEEEec
Confidence 65321 111 23445555677777775
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.23 E-value=0.057 Score=48.20 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=66.4
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVII 251 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIi 251 (488)
.....++|+|||.|.+|..++..+..=|. +|..||...... ....+.. .+. +-++.||+|++
T Consensus 41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~--------------~~~~~~~-~~l~~l~~~~D~v~~ 103 (199)
T d1dxya1 41 KELGQQTVGVMGTGHIGQVAIKLFKGFGA--KVIAYDPYPMKG--------------DHPDFDY-VSLEDLFKQSDVIDL 103 (199)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSS--------------CCTTCEE-CCHHHHHHHCSEEEE
T ss_pred ccccceeeeeeecccccccccccccccce--eeeccCCccchh--------------hhcchhH-HHHHHHHHhccccee
Confidence 34467899999999999999887754455 899999854210 0111222 245 45789999999
Q ss_pred ecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeec
Q psy12825 252 TAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 252 tag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~g 319 (488)
...... +...++ |. +.+....+++++||++--.=+-...+.++ +..+++.|.+
T Consensus 104 ~~plt~----~T~~li--~~-------~~l~~mk~~a~lIN~aRG~vvde~aL~~a--L~~g~i~ga~ 156 (199)
T d1dxya1 104 HVPGIE----QNTHII--NE-------AAFNLMKPGAIVINTARPNLIDTQAMLSN--LKSGKLAGVG 156 (199)
T ss_dssp CCCCCG----GGTTSB--CH-------HHHHHSCTTEEEEECSCTTSBCHHHHHHH--HHTTSEEEEE
T ss_pred eecccc----cccccc--cH-------HHhhccCCceEEEecccHhhhhhHHHHHH--HhcCCcceEe
Confidence 852111 111111 11 23334467899999985422223333332 2235666654
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.23 E-value=0.0073 Score=51.98 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=56.2
Q ss_pred ceEEEEec-ccchHHHHHHHHHcC-C-CCeEEEEeCChhHHHHHHHHHhhcCCCC-CCCcEEEcCCccccCCCcEEEEec
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQG-I-YSNFCLIDSNEDRCKGEMLDLQHGAPFL-RSPKIESGSDIAMSEGSRIVIITA 253 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~-l-~~el~L~Di~~e~l~g~~~dL~~~~~~~-~~~~v~~ttd~eal~dADiVIita 253 (488)
|||+|||| |.+|+-+...|.... + ..++.++.-+.. .+. ...+. ....+....+.+.++++|+||++.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~--~gk------~~~~~~~~~~~~~~~~~~~~~~~DvvF~al 72 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI--GVP------APNFGKDAGMLHDAFDIESLKQLDAVITCQ 72 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC--SSB------CCCSSSCCCBCEETTCHHHHTTCSEEEECS
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc--ccc------ccccCCcceeeecccchhhhccccEEEEec
Confidence 69999999 999999887766543 2 347777754321 111 11111 112222334556789999999995
Q ss_pred ccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch
Q psy12825 254 GVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD 298 (488)
Q Consensus 254 g~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd 298 (488)
. -.+-+++++.+.+...+.+| +.|-.|
T Consensus 73 p----------------~~~s~~~~~~l~~~g~~~~V--IDlSsd 99 (147)
T d1mb4a1 73 G----------------GSYTEKVYPALRQAGWKGYW--IDAAST 99 (147)
T ss_dssp C----------------HHHHHHHHHHHHHTTCCSEE--EESSST
T ss_pred C----------------chHHHHHhHHHHHcCCceEE--EeCCcc
Confidence 2 12456677777666555433 444443
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.21 E-value=0.014 Score=52.33 Aligned_cols=33 Identities=27% Similarity=0.538 Sum_probs=29.8
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
|||+|||||..|.+.|+.|+..|+ +|+|+|.++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~--~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGT--DAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence 689999999999999999999987 899999753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.18 E-value=0.089 Score=45.66 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=47.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCcE
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dADi 248 (488)
.+++|.|+|| |.+|++++..|+..+..-.++.+.++++... ++.. ..++... ++. ++++++|.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~----~~~~------~~~~~~~d~~~~~~~~~~~~~~d~ 71 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE----KIGG------EADVFIGDITDADSINPAFQGIDA 71 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH----HTTC------CTTEEECCTTSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH----hccC------CcEEEEeeecccccccccccccee
Confidence 4679999998 9999999999999886335555666665433 2221 1222221 222 46899999
Q ss_pred EEEeccc
Q psy12825 249 VIITAGV 255 (488)
Q Consensus 249 VIitag~ 255 (488)
||.+++.
T Consensus 72 vi~~a~~ 78 (252)
T d2q46a1 72 LVILTSA 78 (252)
T ss_dssp EEECCCC
T ss_pred eEEEEee
Confidence 9998764
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.17 E-value=0.016 Score=50.12 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=31.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.++||+|||||..|...|..|+..|+ .+|.++|..+
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~-~~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGY-SDITIFEKQE 38 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence 35799999999999999999999987 3599999865
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=94.16 E-value=0.16 Score=48.64 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=68.4
Q ss_pred CceEEEEec-ccchHHHHHHHHH-cCCCCeEEEEeC---------ChhHHHHHHHHHhhcCC----CC-CCCcEEEcCCc
Q psy12825 177 DQKITVVGA-GQVGMACTYSILT-QGIYSNFCLIDS---------NEDRCKGEMLDLQHGAP----FL-RSPKIESGSDI 240 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~-~~l~~el~L~Di---------~~e~l~g~~~dL~~~~~----~~-~~~~v~~ttd~ 240 (488)
.|||.|+|| |.+|++++..|+. ++. +|+.+|. ..+..+.....+..... .. ....+. ..|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Di 78 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALE-VGDV 78 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEE-ESCT
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEE-ECcc
Confidence 479999999 9999999999886 455 8999983 11222333333333211 01 112232 3342
Q ss_pred ----------cccCCCcEEEEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCCCcEEEE
Q psy12825 241 ----------AMSEGSRIVIITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLI 292 (488)
Q Consensus 241 ----------eal~dADiVIitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv 292 (488)
+..+++|+||-+++....+. .........|+.....+.....+..+..++..
T Consensus 79 ~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~ 142 (383)
T d1gy8a_ 79 RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFS 142 (383)
T ss_dssp TCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccc
Confidence 23467899999986432211 12334456788888888888888876654433
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.00 E-value=0.28 Score=44.97 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
.+.+++.|.|| +.+|..+|..|+..|. .|++.|++++.++....++.... .++. ...| .
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~ 78 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG-----FQVTGSVCDASLRPEREKLMQT 78 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-----CceEEEeccCCCHHHHHHHHHH
Confidence 35677888898 8899999999999997 89999999999988888876532 1221 1122 1
Q ss_pred --cccC-CCcEEEEecccccC-C--CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 --AMSE-GSRIVIITAGVRSL-V--GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 --eal~-dADiVIitag~~~k-~--G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+. .-|++|..+|.... + ..+.. ..+.-|+. ..+.+.+.|++.. .+.||+++
T Consensus 79 ~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~is 144 (259)
T d1xq1a_ 79 VSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMS 144 (259)
T ss_dssp HHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC
T ss_pred HHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccc
Confidence 1233 47999999986432 1 22222 23444443 4566666666544 45566665
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.93 E-value=0.14 Score=48.53 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
++.|||.|+|| |.+|+.++..|+.++. +|+.+|.....- .... ....++... .+. +.+++.|
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~------~~~~---~~~~~~~~~D~~~~~~~~~~~~~~d 81 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEH------MTED---MFCDEFHLVDLRVMENCLKVTEGVD 81 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSS------SCGG---GTCSEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccc------hhhh---cccCcEEEeechhHHHHHHHhhcCC
Confidence 36789999998 9999999999999987 899999743210 0000 011233322 122 3578999
Q ss_pred EEEEecccccCC---CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 248 IVIITAGVRSLV---GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 248 iVIitag~~~k~---G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.||.+++..... ..........|+.....+.....+..-.- +|..|
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~-~i~~S 130 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR-FFYAS 130 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhCccc-ccccc
Confidence 999987543211 12234445667777777777777765443 44443
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.91 E-value=0.02 Score=54.47 Aligned_cols=38 Identities=21% Similarity=0.487 Sum_probs=32.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
.++||+|||||..|.+.|..|+..+...+|++++.+.+
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 35689999999999999999988877679999998753
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.76 E-value=0.022 Score=50.94 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+||+|||||..|.+.|..|...+...+|.+||..+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL 36 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 59999999999999999998876655999999865
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.55 E-value=0.17 Score=46.55 Aligned_cols=113 Identities=13% Similarity=0.197 Sum_probs=68.3
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c-----------
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I----------- 240 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~----------- 240 (488)
.+.+.|.|| +.+|..++..|+..|. +|++.|+++++++....++..... ...++. ...| .
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGV--SEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CcCceEEEEccCCCHHHHHHHHHHHH
Confidence 344555587 8999999999999997 899999999999988888876421 112222 2222 1
Q ss_pred cccCCCcEEEEecccccC-----C--CcchH---hhHhhhHH----HHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 AMSEGSRIVIITAGVRSL-----V--GETRL---QLVDRNVK----IFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 eal~dADiVIitag~~~k-----~--G~~r~---dll~~N~~----ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+..-|++|..+|.... + ..+.. ..+.-|+. ..+...+.+++. ...+|++.|
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S 147 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS 147 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence 235579999999886421 1 11222 23334433 456666666554 345444444
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.47 E-value=0.27 Score=42.39 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=49.0
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CC--c----c--ccC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SD--I----A--MSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td--~----e--al~ 244 (488)
..+...|+|+|+|.+|...++.+...+. .+|+.+|+++++++ .+.++-... .|... .+ . + .-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~-~Ak~~GA~~------~in~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFE-KAMAVGATE------CISPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHH-HHHHHTCSE------EECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHH-HHHhcCCcE------EECccccchHHHHHHHHhccc
Confidence 3455689999999999887777666664 48999999999997 466664211 11111 11 1 1 235
Q ss_pred CCcEEEEecc
Q psy12825 245 GSRIVIITAG 254 (488)
Q Consensus 245 dADiVIitag 254 (488)
++|+||++.+
T Consensus 99 G~d~vi~~~g 108 (176)
T d1d1ta2 99 NVGYTFEVIG 108 (176)
T ss_dssp CCCEEEECSC
T ss_pred cceEEEEeCC
Confidence 8999999975
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=93.41 E-value=0.012 Score=50.59 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=25.4
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHHHH
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMARDA 158 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~ei 158 (488)
.||+|||+ |+||.++||.|..+.+.+|.
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~ 33 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKD 33 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccc
Confidence 59999997 99999999999999998763
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.38 E-value=0.14 Score=44.89 Aligned_cols=102 Identities=10% Similarity=0.127 Sum_probs=62.2
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc----c-ccCCCcEE
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI----A-MSEGSRIV 249 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~----e-al~dADiV 249 (488)
++||.|+|| |.+|.+++..|+..+...+|+..-+++. ....++.. ..|. + ...+.|.|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~---------------~~~~~~~~~~~d~~~~~~~~~~~~d~v 66 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL---------------AEHPRLDNPVGPLAELLPQLDGSIDTA 66 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC---------------CCCTTEECCBSCHHHHGGGCCSCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCch---------------hhcccccccccchhhhhhccccchhee
Confidence 589999999 9999999999999886545655544321 01112221 1121 2 24568999
Q ss_pred EEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|.+++..........++...|......+++..++..... ++.+|
T Consensus 67 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~-~i~~S 110 (212)
T d2a35a1 67 FCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARH-YLVVS 110 (212)
T ss_dssp EECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred eeeeeeeccccccccccccchhhhhhhcccccccccccc-ccccc
Confidence 998765432222334555666666677777777655444 44444
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.34 E-value=0.3 Score=42.06 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=61.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-c-CC-c-----c--cc
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-G-SD-I-----A--MS 243 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-t-td-~-----e--al 243 (488)
..+..+|+|+|+|.+|...++.+...+. ..|+..|+++++++ .+.++-.. .+.. . .| . + .-
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~-~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFP-KAKALGAT-------DCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHH-HHHHTTCS-------EEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHH-HHHHhCCC-------cccCCccchhhhhhhHhhhhc
Confidence 4456799999999999876666655553 57899999999886 45555321 1111 1 11 1 1 23
Q ss_pred CCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCC-cEEEEEeCCch
Q psy12825 244 EGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPD-CILLIISNPVD 298 (488)
Q Consensus 244 ~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~-a~vIv~TNPvd 298 (488)
.++|+||.++|.+ .. +-..++-..|. +.+++++.|.+
T Consensus 97 ~G~d~vie~~G~~---------------~~---~~~a~~~~~~g~G~~v~vG~~~~ 134 (174)
T d1e3ia2 97 GGVDYSLDCAGTA---------------QT---LKAAVDCTVLGWGSCTVVGAKVD 134 (174)
T ss_dssp SCBSEEEESSCCH---------------HH---HHHHHHTBCTTTCEEEECCCSSS
T ss_pred CCCcEEEEecccc---------------hH---HHHHHHHhhcCCeEEEecCCCCC
Confidence 5899999998633 11 22233334564 78888887754
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.34 E-value=0.029 Score=53.39 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=31.4
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+.+||+|||||..|.+.|+.|+.+|. +|.|+|.++
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~--~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGH--QVHIIDQRD 35 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCC--CEEEEECCC
Confidence 46899999999999999999998876 999999865
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.31 E-value=0.034 Score=46.67 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=31.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+||+|||+|.+|..+|..|...+...+|+|+|.++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 479999999999999999998876545899999765
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.27 E-value=0.0057 Score=53.65 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=28.2
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhH----HHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMA----RDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la----~eivlid 162 (488)
+.||+|||+|+||++++++.+++... +|++++|
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~D 37 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVD 37 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEEC
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEc
Confidence 35999999999999999888877665 5899888
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.14 E-value=0.03 Score=48.74 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-CCc-c---cc---CC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG-SDI-A---MS---EG 245 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t-td~-e---al---~d 245 (488)
..+..+|+|+|+|.+|...++.+...+. ..|+..|.++++++ .+.++-.. .-+... .+. + ++ .+
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~-~a~~lGa~------~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVE-AAKFYGAT------DILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHH-HHHHHTCS------EEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHH-HHHhhCcc------ccccccchhHHHHHHHHhhccC
Confidence 4456689999999999876665554443 47999999998876 34555310 011111 111 1 22 45
Q ss_pred CcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 246 SRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 246 ADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+|+||.++|.+. .+.+. ++-..|.+.+++++.|
T Consensus 97 ~D~vid~~g~~~---------------~~~~a---~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 97 VDRVIMAGGGSE---------------TLSQA---VKMVKPGGIISNINYH 129 (174)
T ss_dssp EEEEEECSSCTT---------------HHHHH---HHHEEEEEEEEECCCC
T ss_pred cceEEEccCCHH---------------HHHHH---HHHHhcCCEEEEEeec
Confidence 999999986331 22222 2233578888887643
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.13 E-value=0.13 Score=49.54 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=68.9
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCC--------------CCCCcEEEcCCc-
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPF--------------LRSPKIESGSDI- 240 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~--------------~~~~~v~~ttd~- 240 (488)
.|||.|+|| |.+|++++..|+.+|. +|+.+|.-..+.............. .....+.. .|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~Dl~ 77 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYV-GDIC 77 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEE-SCTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEE-ccCC
Confidence 479999999 9999999999999997 8999994221111111100000000 01122222 242
Q ss_pred --c----ccCC--CcEEEEecccccCC----C-cchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 --A----MSEG--SRIVIITAGVRSLV----G-ETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 --e----al~d--ADiVIitag~~~k~----G-~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+ .+++ .|+||-.|+....+ . ....+....|+.--..+.+.+.+++.+..++..|.
T Consensus 78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss 145 (393)
T d1i24a_ 78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT 145 (393)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccc
Confidence 2 3443 48999887543211 1 11334567888888889999999887776666653
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.06 E-value=0.032 Score=48.16 Aligned_cols=34 Identities=24% Similarity=0.610 Sum_probs=29.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+||+|||||..|.+.|+.|+..|+ .+|+++|.++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~-~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGI-TDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence 489999999999999999999885 3699999864
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=93.02 E-value=0.053 Score=51.18 Aligned_cols=112 Identities=15% Similarity=0.024 Sum_probs=67.3
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc----ccC--CC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDIA----MSE--GS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e----al~--dA 246 (488)
+.+||.|+|| |.+|+.++..|+.+|. +|+.+|++............ . ....+.... +|++ +++ +.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~-~---~~~i~~~~~Dl~d~~~l~~~~~~~~~ 80 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETAR-V---ADGMQSEIGDIRDQNKLLESIREFQP 80 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTT-T---TTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhh-c---ccCCeEEEeeccChHhhhhhhhhchh
Confidence 5689999998 9999999999999997 89999986643332221111 1 112223222 1332 233 45
Q ss_pred cEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEE
Q psy12825 247 RIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLII 293 (488)
Q Consensus 247 DiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~ 293 (488)
|+|+..++.+... ..........|+.-...+.....+......++..
T Consensus 81 ~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~ 129 (356)
T d1rkxa_ 81 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNI 129 (356)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEE
T ss_pred hhhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccc
Confidence 7787776533111 0122344566777778888888777655544433
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.33 Score=44.56 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=69.6
Q ss_pred CceEEEE-ec-ccchHHHHHHHHHc-CCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----------
Q psy12825 177 DQKITVV-GA-GQVGMACTYSILTQ-GIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----------- 240 (488)
Q Consensus 177 ~~KIaII-GA-G~vG~~ia~~La~~-~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----------- 240 (488)
.++|+|| || +.+|..+|..|+.. +. .|++.++++++++..+.+|.... ....+... +|+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~~~sv~~~~~~~~ 76 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLR 76 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCCHHHHHHHHHHHH
Confidence 5789766 76 88899999999875 54 89999999999998888887542 12222221 121
Q ss_pred cccCCCcEEEEecccccCC---CcchHh---hHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCC
Q psy12825 241 AMSEGSRIVIITAGVRSLV---GETRLQ---LVDRNVKIFKDLIPKIAKG-SPDCILLIISNP 296 (488)
Q Consensus 241 eal~dADiVIitag~~~k~---G~~r~d---ll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNP 296 (488)
+.+..-|++|..+|..... ..+..+ .+.-|.--...+++.+-.. .+.+.+|+++--
T Consensus 77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~ 139 (275)
T d1wmaa1 77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI 139 (275)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 2356799999999874321 122222 2344443333333333322 234667777643
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.97 E-value=0.039 Score=49.64 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=30.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
++||+|||||..|.++|..|...|+ ..|.++|..+
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi-~~V~V~Er~~ 35 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGI-GKVTLLESSS 35 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence 5799999999999999999988885 3788999854
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=92.92 E-value=0.0075 Score=56.15 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=55.1
Q ss_pred ceEEEEeccc--chHHHHH------HHHHcCCCCeEEEEeCChhHH-HHHHH--------HHh----h---cCCCCC---
Q psy12825 178 QKITVVGAGQ--VGMACTY------SILTQGIYSNFCLIDSNEDRC-KGEML--------DLQ----H---GAPFLR--- 230 (488)
Q Consensus 178 ~KIaIIGAG~--vG~~ia~------~La~~~l~~el~L~Di~~e~l-~g~~~--------dL~----~---~~~~~~--- 230 (488)
.++.++|||. ||..++. .|+..|. .+++.|+|.++. +++.. .+. . ......
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~--~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~ 118 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPG--LVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKAC 118 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSE--EEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCC--eEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccch
Confidence 3578899986 6655555 3445554 799999996543 22111 111 1 000000
Q ss_pred -------CCcEEEcCCc-cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCC-CcEEEE
Q psy12825 231 -------SPKIESGSDI-AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSP-DCILLI 292 (488)
Q Consensus 231 -------~~~v~~ttd~-eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p-~a~vIv 292 (488)
..-+..++|. +++++||+||++...+ +.+.++++.|..+.+ +.+++.
T Consensus 119 ~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~---------------~~v~~Vi~~I~~~l~~g~Iiid 174 (242)
T d2b0ja2 119 IHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG---------------NKQPDIIKKFADAIPEGAIVTH 174 (242)
T ss_dssp EESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC---------------TTHHHHHHHHGGGSCTTCEEEE
T ss_pred hhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH---------------HHHHHHHHHHHhhCCCCcEEEe
Confidence 1124455665 7899999999996211 245566677777754 554433
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.063 Score=50.59 Aligned_cols=101 Identities=13% Similarity=0.142 Sum_probs=64.8
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc----c-ccCCCcEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI----A-MSEGSRIV 249 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~----e-al~dADiV 249 (488)
|||.|+|| |.+|+.++..|+.++. .+|+.+|+....... +... ...++... ++. + .++++|+|
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~-~~V~~ld~~~~~~~~----~~~~----~~~~~i~~Di~~~~~~~~~~~~~~d~V 71 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISR----FLNH----PHFHFVEGDISIHSEWIEYHVKKCDVV 71 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGGGGG----GTTC----TTEEEEECCTTTCSHHHHHHHHHCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCcchhh----hccC----CCeEEEECccCChHHHHHHHHhCCCcc
Confidence 69999999 9999999999988873 279999985442221 1110 11122211 222 2 57789999
Q ss_pred EEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCCC
Q psy12825 250 IITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSPD 287 (488)
Q Consensus 250 Iitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p~ 287 (488)
|-+++...... ......+..|+.....+.+.+.+....
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~ 111 (342)
T d2blla1 72 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR 111 (342)
T ss_dssp EECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCE
T ss_pred ccccccccccccccCCcccccccccccccccccccccccc
Confidence 99886533221 122345678888888888888877543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=92.84 E-value=0.29 Score=44.77 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=86.9
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c---------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I--------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~--------- 240 (488)
+.+.+.|.|| +.+|..+|..|+..|. +|++.|++ .+.++....++.... ..++. ...| .
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH----GVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH----TSCEEEECCCTTSHHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHH
Confidence 4556667788 8899999999999997 89999996 466666666664321 11121 1222 1
Q ss_pred --cccCCCcEEEEecccccCCC---cch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCc------hhHHH
Q psy12825 241 --AMSEGSRIVIITAGVRSLVG---ETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPV------DVLTY 302 (488)
Q Consensus 241 --eal~dADiVIitag~~~k~G---~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~ 302 (488)
+.+-.-|++|..+|...... .+. .+.+.-|+ ...+...+.+.+.. .+.||+++-.. +...|
T Consensus 77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~~~~~~~Y 155 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLVASANKSAY 155 (260)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCTTCHHH
T ss_pred HHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeecccccceeccCCcchh
Confidence 23457999999998753221 122 22344443 35566777776654 46677765332 23344
Q ss_pred HHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 303 ISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 303 ~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
.+.|.. + ..+-+.+|..++ +..|++-.+
T Consensus 156 ~asKaa---------l------~~lt~~lA~el~--~~gIrVN~I 183 (260)
T d1x1ta1 156 VAAKHG---------V------VGFTKVTALETA--GQGITANAI 183 (260)
T ss_dssp HHHHHH---------H------HHHHHHHHHHHT--TTTEEEEEE
T ss_pred hhhhhh---------H------HHhHHHHHHHhc--hhCcEEEEE
Confidence 444431 1 245667788774 555665333
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.78 E-value=0.34 Score=43.84 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=85.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+++.|+|| +.+|..+|..|+..|. +|++.+++.++++....++... -+....| .
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~Dls~~~~i~~~~~~i~ 74 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEAE-------AIAVVADVSDPKAVEAVFAEAL 74 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCSS-------EEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCc-------eEEEEecCCCHHHHHHHHHHHH
Confidence 5678888898 8899999999999998 9999999998887655554321 1111122 1
Q ss_pred cccCCCcEEEEecccccC-C--Ccch---HhhHhhhHHHHHHHHHHHhccC-CCcEEEEEeCCch--hHHHHHHHhcCCC
Q psy12825 241 AMSEGSRIVIITAGVRSL-V--GETR---LQLVDRNVKIFKDLIPKIAKGS-PDCILLIISNPVD--VLTYISWKLSGFP 311 (488)
Q Consensus 241 eal~dADiVIitag~~~k-~--G~~r---~dll~~N~~ii~ei~~~I~~~~-p~a~vIv~TNPvd--i~t~~~~k~sg~p 311 (488)
+.+..-|++|..++.... + ..+. .+.+.-|+.-...+.+....+. ....+++.+.... ...+..+-.
T Consensus 75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~~~Y~~---- 150 (241)
T d2a4ka1 75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHYAA---- 150 (241)
T ss_dssp HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHHHHHHH----
T ss_pred HHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCccccch----
Confidence 235679999998876432 1 1222 2345556555555555544442 3344555554332 111111111
Q ss_pred CCcEEeecCChHHHHHHHHHHHHhCCCCCCceeE
Q psy12825 312 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGF 345 (488)
Q Consensus 312 ~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~ 345 (488)
.| ..+ ..+-+.+|+.++ +..|++-
T Consensus 151 -sK-----~al--~~lt~~lA~el~--~~gIrvN 174 (241)
T d2a4ka1 151 -GK-----LGV--VGLARTLALELA--RKGVRVN 174 (241)
T ss_dssp -CS-----SHH--HHHHHHHHHHHT--TTTCEEE
T ss_pred -hh-----HHH--HHHHHHHHHHHh--HhCCEEe
Confidence 11 112 357888899985 4445543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.75 E-value=0.36 Score=43.72 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=72.0
Q ss_pred ceEE-EEec-ccchHHHHHHHHHcCCC-----CeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC---c------
Q psy12825 178 QKIT-VVGA-GQVGMACTYSILTQGIY-----SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD---I------ 240 (488)
Q Consensus 178 ~KIa-IIGA-G~vG~~ia~~La~~~l~-----~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd---~------ 240 (488)
++|+ |.|| +.+|..++..|+..|.. ..++++|++++.++....++...- .++. ...| .
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-----~~~~~~~~Dvt~~~~v~~~ 75 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-----ALTDTITADISDMADVRRL 75 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-----CEEEEEECCTTSHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHH
Confidence 4654 6688 88999999999998741 248999999999988888886531 1111 1122 1
Q ss_pred -----cccCCCcEEEEecccccCCC---cch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 241 -----AMSEGSRIVIITAGVRSLVG---ETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 241 -----eal~dADiVIitag~~~k~G---~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.+..-|++|..+|...... .+. ...+.-|+ -..+.+.+.|.+.. .+.+|+++.-
T Consensus 76 ~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~ 145 (240)
T d2bd0a1 76 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSV 145 (240)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred HHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEech
Confidence 24567999999988653211 121 22344443 35677777776643 5667777643
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.73 E-value=0.038 Score=50.55 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=31.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
..||.|+|+|.+|+.++..|+..|+ .+|+|+|-|.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence 3599999999999999999999997 5899999653
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.028 Score=51.64 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=66.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC--C-------ccccC
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS--D-------IAMSE 244 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt--d-------~eal~ 244 (488)
.+.+.+.|.|| +.+|..++..|+..|. +|++.|+++++++.. .+.. ..+..... + .+.+.
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~l~~~----~~~~----~~~~~~~d~~~~~~~~~~~~~~~ 73 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKLQEL----EKYP----GIQTRVLDVTKKKQIDQFANEVE 73 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHGGG----GGST----TEEEEECCTTCHHHHHHHHHHCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHH----Hhcc----CCceeeeeccccccccccccccc
Confidence 34566777788 9999999999999997 999999998776542 2211 11111110 1 13567
Q ss_pred CCcEEEEecccccCC---CcchHh---hHhhh----HHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 245 GSRIVIITAGVRSLV---GETRLQ---LVDRN----VKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 245 dADiVIitag~~~k~---G~~r~d---ll~~N----~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
.-|++|..+|..... ..+..+ .+.-| ....+.+.+.+.+. +.+-||+++-.
T Consensus 74 ~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~ 134 (245)
T d2ag5a1 74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSV 134 (245)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCS
T ss_pred cceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeech
Confidence 899999998865331 112222 22233 23456666666554 45557777543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.66 E-value=0.011 Score=51.88 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=28.9
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhH----HHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMA----RDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la----~eivlid 162 (488)
..||+|||+|+||++.++..+++.+. +|++++|
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~D 39 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYD 39 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEEC
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEc
Confidence 35999999999999999988887776 4899988
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.61 E-value=0.24 Score=47.12 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=62.5
Q ss_pred eEE-EEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH-HHHHHhhcCCCCCCCcEEE-cCC---cc----ccCCC-
Q psy12825 179 KIT-VVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG-EMLDLQHGAPFLRSPKIES-GSD---IA----MSEGS- 246 (488)
Q Consensus 179 KIa-IIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g-~~~dL~~~~~~~~~~~v~~-ttd---~e----al~dA- 246 (488)
||+ |+|| |.+|++++..|+..|. +|+.+|+....... ....+.+.. .....++.. ..| ++ .+++.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 78 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDP-HTCNPKFHLHYGDLSDTSNLTRILREVQ 78 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC----------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhh-hhcCCCeEEEEeecCCHHHHHHHHhccC
Confidence 555 8898 9999999999999987 99999984321110 011111110 011233433 223 32 34444
Q ss_pred -cEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccC--CCcEEEEEe
Q psy12825 247 -RIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGS--PDCILLIIS 294 (488)
Q Consensus 247 -DiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~--p~a~vIv~T 294 (488)
|+|+-+++....+ -......+..|+.--..+.+.+++++ +...+|.+|
T Consensus 79 ~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S 131 (357)
T d1db3a_ 79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS 131 (357)
T ss_dssp CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred CCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 9999998764322 23344556778888888888887764 223455544
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.52 E-value=0.04 Score=50.06 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=29.2
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
-|+|||||.+|.++|+.|+..|. +|+++|.++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~--~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENK--NTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence 39999999999999999999997 899999753
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.46 E-value=0.029 Score=49.83 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCC-----CCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGI-----YSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l-----~~el~L~Di~~ 212 (488)
++.||+|||||..|.+.|+.|+..|. ..+|.+||..+
T Consensus 1 rp~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred CCcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 46799999999999999999998763 23799999865
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.054 Score=48.64 Aligned_cols=34 Identities=21% Similarity=0.543 Sum_probs=30.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
+..||+|||||..|.+.|+.|+..|+ +|.+++.+
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~--~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGM--DVTLLEAR 37 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC--CEEEEeCC
Confidence 56789999999999999999999987 89999864
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.41 E-value=0.7 Score=42.19 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC-hhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-------
Q psy12825 173 IESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN-EDRCKGEMLDLQHGAPFLRSPKIESGSD---I------- 240 (488)
Q Consensus 173 ~~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~-~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~------- 240 (488)
.+.+.+++.|.|| +.+|..++..|+..|. +|++.|.+ ++.++....++.... ... .....| .
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g---~~~-~~~~~D~~~~~~v~~~~ 87 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG---SDA-ACVKANVGVVEDIVRMF 87 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCE-EEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC---Cce-eeEeCCCCCHHHHHHHH
Confidence 3456678888898 9999999999999997 89999986 556666666665431 111 111122 1
Q ss_pred ----cccCCCcEEEEeccccc
Q psy12825 241 ----AMSEGSRIVIITAGVRS 257 (488)
Q Consensus 241 ----eal~dADiVIitag~~~ 257 (488)
+.+..-|++|..++...
T Consensus 88 ~~~~~~~g~idilV~nag~~~ 108 (272)
T d1g0oa_ 88 EEAVKIFGKLDIVCSNSGVVS 108 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHhCCCCccccccccch
Confidence 24567899999987653
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=92.41 E-value=0.25 Score=44.80 Aligned_cols=119 Identities=19% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC--------hhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN--------EDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSE 244 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~--------~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~ 244 (488)
..+..||++.|||+.|.+++..+...+. ++++++|.+ ...+.....++.+... .... ..+. +.++
T Consensus 23 ~l~d~riv~~GAGsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~---~~~~--~~~l~~~l~ 96 (222)
T d1vl6a1 23 KIEEVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITN---PERL--SGDLETALE 96 (222)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC---TTCC--CSCHHHHHT
T ss_pred ChhhcEEEEEChHHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhc---chhh--hcchHhhcc
Confidence 3455799999999999999998877664 689999973 2223333344443321 1111 1233 5789
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch-hHHHHHHHhcCCCCCcEEeecC
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD-VLTYISWKLSGFPKNRVIGSGT 320 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd-i~t~~~~k~sg~p~~rViG~gt 320 (488)
++++++-+.. +|.-+. +.|.+.++..+|+=.|||.. +-++..|.. | .-+|++|.
T Consensus 97 g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~~~a~~~-G---~ai~AtGs 151 (222)
T d1vl6a1 97 GADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDPELAREA-G---AFIVATGR 151 (222)
T ss_dssp TCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCHHHHHHT-T---CSEEEESC
T ss_pred Ccceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhhhhheec-c---ceEEecCC
Confidence 9998776642 222111 24566788898888999965 334444443 2 34777764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.31 E-value=0.03 Score=45.25 Aligned_cols=36 Identities=14% Similarity=0.389 Sum_probs=30.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
.+++|+|||+|.+|.-+|..|...|. +++|++..+.
T Consensus 21 ~p~~v~IiGgG~ig~E~A~~l~~~G~--~Vtlve~~~~ 56 (117)
T d1ebda2 21 VPKSLVVIGGGYIGIELGTAYANFGT--KVTILEGAGE 56 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred cCCeEEEECCCccceeeeeeeccccc--EEEEEEecce
Confidence 35799999999999999999988886 8999987443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.30 E-value=0.052 Score=47.34 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=30.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
|||+|||+|.+|...|..|...+...+|.+++.++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 79999999999999999998766556899998743
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.15 E-value=0.25 Score=42.33 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC--Cc-c---ccC--
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS--DI-A---MSE-- 244 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt--d~-e---al~-- 244 (488)
+..+..+|.|+|+|.+|...++.+...+. ..|+..|.++++++ .+.++-. ..+.... |. + ++.
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~-~a~~~Ga-------~~~i~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLE-LAKQLGA-------THVINSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHH-HHHHHTC-------SEEEETTTSCHHHHHHHHTTS
T ss_pred CCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHH-HHHHcCC-------eEEEeCCCcCHHHHHHHHcCC
Confidence 34566789999999999887776666564 36788899998876 3555531 1222121 22 2 232
Q ss_pred CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 245 GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 245 dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
+.|+||.++|.+ +.+.+. ++-..|.+.+++++.|
T Consensus 96 g~D~vid~~G~~---------------~~~~~~---~~~~~~~G~i~~~G~~ 129 (174)
T d1f8fa2 96 GVNFALESTGSP---------------EILKQG---VDALGILGKIAVVGAP 129 (174)
T ss_dssp CEEEEEECSCCH---------------HHHHHH---HHTEEEEEEEEECCCC
T ss_pred CCcEEEEcCCcH---------------HHHHHH---HhcccCceEEEEEeec
Confidence 489999997532 122222 2333567888887643
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.07 E-value=0.042 Score=50.43 Aligned_cols=34 Identities=18% Similarity=0.453 Sum_probs=30.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
.||+|||||.+|.++|..|...|+ ++.++|.+++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~--~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGI--DNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTC--CEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC--CEEEEeCCCC
Confidence 379999999999999999999998 8999998764
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=92.06 E-value=0.12 Score=42.05 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=31.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+.++|+|||+|.+|.-+|..|...|. +|++++..+
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~--~Vtlie~~~ 63 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGK--KVTVIDILD 63 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred cCCCEEEEECChHHHHHHHHHhhccce--EEEEEEecC
Confidence 345799999999999999999998887 899998744
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=92.00 E-value=0.16 Score=46.47 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=85.8
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-----------cc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-----------AM 242 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-----------ea 242 (488)
.+.+.+.|.|+ +.+|..++..|+..|. .|++.|++++..+ ....+.... + ...+ +|. +.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~-~~~~~~~~~-~--~~Dv---~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKE-VAEAIGGAF-F--QVDL---EDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHH-HHHHHTCEE-E--ECCT---TCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHH-HHHHcCCeE-E--EEeC---CCHHHHHHHHHHHHHh
Confidence 35677888898 8999999999999997 8999999987654 333332211 0 0011 111 34
Q ss_pred cCCCcEEEEecccccC-C--CcchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHH
Q psy12825 243 SEGSRIVIITAGVRSL-V--GETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWK 306 (488)
Q Consensus 243 l~dADiVIitag~~~k-~--G~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k 306 (488)
+..-|++|..+|.... + ..+.. ..+.-|+ -+.+...+.|.+.. .+.||+++-... ...|.+.|
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~~~~~~~~~Y~asK 152 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLFAEQENAAYNASK 152 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSBCTTBHHHHHHH
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccccccccccccchhHHHH
Confidence 6689999999986432 1 12222 2334443 35566677776643 566777763322 33444443
Q ss_pred hcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 307 LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 307 ~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
.. + ..+-+.+|+.++ +..|++-.+
T Consensus 153 aa---------l------~~ltk~lA~el~--~~gIrVN~I 176 (248)
T d2d1ya1 153 GG---------L------VNLTRSLALDLA--PLRIRVNAV 176 (248)
T ss_dssp HH---------H------HHHHHHHHHHHG--GGTEEEEEE
T ss_pred HH---------H------HHHHHHHHHHhh--hhCcEEEEE
Confidence 21 1 245666777774 455665433
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.99 E-value=0.067 Score=48.07 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=33.2
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.....+||+|||||..|.+.|..|+..|+ ++.|+|.+.
T Consensus 45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~--~v~l~E~~~ 82 (233)
T d1djqa3 45 QTKNKDSVLIVGAGPSGSEAARVLMESGY--TVHLTDTAE 82 (233)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred cccCCceEEEEcccHHHHHHHHHHHHhcc--ceeeEeecc
Confidence 34467899999999999999999999998 899999755
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.94 E-value=0.053 Score=50.16 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=29.4
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+|+|||||.+|.++|+.|+..|. .+|+|+|.+.
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~-~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGW-NNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence 379999999999999999998875 3699999753
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.85 E-value=0.053 Score=44.45 Aligned_cols=92 Identities=15% Similarity=0.284 Sum_probs=57.7
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCcEEE
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSRIVI 250 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dADiVI 250 (488)
++|.|+|.|.+|..++..| ++. ++.++|.++++.+.. ... ...+... ++. ..+.+|+.+|
T Consensus 1 kHivI~G~g~~g~~l~~~L--~~~--~i~vi~~d~~~~~~~----~~~-----~~~~i~Gd~~~~~~L~~a~i~~A~~vi 67 (129)
T d2fy8a1 1 RHVVICGWSESTLECLREL--RGS--EVFVLAEDENVRKKV----LRS-----GANFVHGDPTRVSDLEKANVRGARAVI 67 (129)
T ss_dssp CCEEEESCCHHHHHHHHTS--CGG--GEEEEESCTTHHHHH----HHT-----TCEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHH--cCC--CCEEEEcchHHHHHH----Hhc-----CccccccccCCHHHHHHhhhhcCcEEE
Confidence 4799999999999888876 332 688999999876532 211 1122221 222 3589999999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
++... | ..|+. ++..+++++|+..++..+|-.
T Consensus 68 ~~~~~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~ 99 (129)
T d2fy8a1 68 VNLES---------D--SETIH----CILGIRKIDESVRIIAEAERY 99 (129)
T ss_dssp ECCSS---------H--HHHHH----HHHHHHHHCSSSCEEEECSSG
T ss_pred Eeccc---------h--hhhHH----HHHHHHHHCCCceEEEEEcCH
Confidence 98421 1 13333 344567778987676666543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.18 Score=42.20 Aligned_cols=35 Identities=26% Similarity=0.669 Sum_probs=30.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
..+.++|.|||+|.+|..-+..|+..|- +|++++.
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA--~VtVvap 44 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTGC--KLTLVSP 44 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeC
Confidence 4567899999999999999999988886 8899954
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.62 E-value=0.26 Score=46.34 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=66.0
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh-hHHHH--HHHHHhhcCCCCCCCcEEEc--CCccc----cC--C
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE-DRCKG--EMLDLQHGAPFLRSPKIESG--SDIAM----SE--G 245 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~-e~l~g--~~~dL~~~~~~~~~~~v~~t--td~ea----l~--d 245 (488)
+.|.|+|| |.+|++++..|+.++. +|+.+|... ..... ....+.+ ...++... +|++. ++ +
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~Dl~d~~~l~~~~~~~~ 74 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTK-----HHIPFYEVDLCDRKGLEKVFKEYK 74 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHT-----SCCCEEECCTTCHHHHHHHHHHSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcc-----cCCeEEEeecCCHHHHHHHHhccC
Confidence 35788999 9999999999999987 899998521 11111 1112211 11233322 23222 22 7
Q ss_pred CcEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 246 SRIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 246 ADiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
.|+||-+++..... ..........|...-..+.+...+.....++..-|
T Consensus 75 ~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS 125 (347)
T d1z45a2 75 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS 125 (347)
T ss_dssp CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCEEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence 89999988644211 12334556678888888888888776665444444
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=91.62 E-value=0.049 Score=43.96 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=28.4
Q ss_pred CceEEEEecccchHHHHHHHHH-cCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILT-QGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~-~~l~~el~L~Di~~ 212 (488)
+++|+|||+|.+|.-+|..+.. .....+|.+++..+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 5799999999999999877654 33455899998743
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.56 E-value=0.15 Score=46.91 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=71.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c----------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I---------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~---------- 240 (488)
.+.+++.|+|| +.+|..++..|+..|. +|++.|+++++++....++..... .... ...| .
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~---~~~~-~~~D~s~~~~~~~~~~~~ 77 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL---NVEG-SVCDLLSRTERDKLMQTV 77 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC---CEEE-EECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---CceE-EEeecCCHHHHHHHHHHH
Confidence 36778999998 9999999999999997 899999999998887777765321 1111 1122 1
Q ss_pred -cccC-CCcEEEEecccccCC---CcchH---hhHhhh----HHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 241 -AMSE-GSRIVIITAGVRSLV---GETRL---QLVDRN----VKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 241 -eal~-dADiVIitag~~~k~---G~~r~---dll~~N----~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
+.+. .-|++|..+|..... ..+.. ..+..| ....+.+.+.+.+.. .+.+|+++
T Consensus 78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~is 142 (258)
T d1ae1a_ 78 AHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLS 142 (258)
T ss_dssp HHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEEC
T ss_pred HHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-cccccccc
Confidence 1232 378888888765321 11222 223333 234555666666554 45566665
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.54 E-value=0.074 Score=43.45 Aligned_cols=36 Identities=22% Similarity=0.594 Sum_probs=31.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
+.++|+|||+|.+|.-+|..|...+. ++.|++..+.
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~--~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGV--HVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred cCCeEEEECcchhHHHHHHHhhcccc--eEEEEeeccc
Confidence 35799999999999999999998887 9999998543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.47 E-value=0.053 Score=47.83 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.6
Q ss_pred ceEEEEecccchHHHHHHHHHcCC----CCeEEEEe
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGI----YSNFCLID 209 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l----~~el~L~D 209 (488)
|||+|||||.+|.+.|+.|+.++. ..++.+++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~ 36 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA 36 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence 699999999999999999998763 34566665
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.30 E-value=0.11 Score=47.81 Aligned_cols=114 Identities=11% Similarity=0.202 Sum_probs=71.2
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-------------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI------------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~------------- 240 (488)
.+.+++.|+|| +.+|.++|..|+..|. +|++.|+++++++....++..... .. ......|.
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~~--~~-~~~~~~d~~~~~~~~~~~~~~ 86 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELGA--AS-AHYIAGTMEDMTFAEQFVAQA 86 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC--SE-EEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhhc--cc-chhhhhhhhhHHHHHHHHHHH
Confidence 46678888899 8899999999999997 899999999999988777665421 11 11111111
Q ss_pred -cccCCCcEEEEecccccCC---CcchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 -AMSEGSRIVIITAGVRSLV---GETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~---G~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+...|+++..++..... ..+.. ..+.-|+ -..+.+.+.|++. .+.+|+++-
T Consensus 87 ~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS 150 (269)
T d1xu9a_ 87 GKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSS 150 (269)
T ss_dssp HHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred HHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEecc
Confidence 1355789999887754221 11221 2233332 3456666666543 456666653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.29 E-value=0.16 Score=47.41 Aligned_cols=187 Identities=14% Similarity=0.076 Sum_probs=98.3
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCC----CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcC--Cc----cccCCC
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGI----YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGS--DI----AMSEGS 246 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l----~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~tt--d~----eal~dA 246 (488)
|||.|+|+ |.+|+.++..|+..+. ..+++.+|...... ....+..... .....+.... +. ....+.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~--~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~ 77 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAG--NRANLAPVDA-DPRLRFVHGDIRDAGLLARELRGV 77 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTC--CGGGGGGGTT-CTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccc--cHhHhhhhhc-CCCeEEEEeccccchhhhcccccc
Confidence 69999999 9999999999998864 35788888622100 0111211111 1111222221 11 358899
Q ss_pred cEEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhH---HHHHHHhcCCCCCcEEeecCC
Q psy12825 247 RIVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVL---TYISWKLSGFPKNRVIGSGTN 321 (488)
Q Consensus 247 DiVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~---t~~~~k~sg~p~~rViG~gt~ 321 (488)
|+|+..+..+... .....+.+..|+.....+.+.+.++...- +|..|...-.- ..-+.+.+.+.|....|. +-
T Consensus 78 d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~-sK 155 (322)
T d1r6da_ 78 DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHVSTNQVYGSIDSGSWTESSPLEPNSPYAA-SK 155 (322)
T ss_dssp CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHH-HH
T ss_pred ceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEeecceeecCCCCCCCCCCCCCCCCCHHHH-HH
Confidence 9999987654321 12234556788888888999888876544 44444211000 000001111222223333 22
Q ss_pred hHHHHHHHHHHHHhCCCCCCce-eEEEeec--CCCcccccccceecCcccc
Q psy12825 322 LDSMRFRVLLAQKLGLSPESVH-GFIIGEH--GDSSVPVWSGVNVAGVTLK 369 (488)
Q Consensus 322 lds~R~~~~lA~~Lgv~p~~V~-~~V~G~H--G~~~vp~~S~a~v~g~pl~ 369 (488)
...-.+-..+++..+++...++ ..|.|.+ .+..+|.|-+....|.++.
T Consensus 156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~ 206 (322)
T d1r6da_ 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLP 206 (322)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcE
Confidence 2222233444566677766665 3678844 3445666654445555543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.18 E-value=0.095 Score=42.74 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=30.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+++++|||+|.+|.-+|..|...|. +|.+++..+
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~--~Vtii~~~~ 56 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGS--KVTVVEFQP 56 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCc--ceeEEEecc
Confidence 35799999999999999999988776 999998744
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=91.13 E-value=0.35 Score=42.88 Aligned_cols=99 Identities=20% Similarity=0.366 Sum_probs=60.9
Q ss_pred ceEEEEecccchHHHHHHHHHcCCC-CeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc-------------------
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG------------------- 237 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~-~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t------------------- 237 (488)
+||.|||.|..|..++..+...++. .+.+.+|.|.+.+... +. ..++...
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~-----~a-----~~ki~iG~~~t~G~G~g~~p~~g~~a 70 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEAS-----NA-----DVKIQIGENITRGLGAGGRPEIGEQA 70 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTC-----CC-----SEEEECCTTTTTTSCCTTCHHHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcC-----Cc-----ceEEecccccCCCcccccCchhhHhH
Confidence 5899999999999999988887753 3788889887655421 10 1111111
Q ss_pred --CCc----cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 238 --SDI----AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 238 --td~----eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
.+. +.+.++|+||+++|.....| . --.+++.+++++... -.+-++|=|-
T Consensus 71 a~e~~~~I~~~l~~~d~vfi~AGlGGgTG---t----gaapviA~~ake~g~----lvv~ivtlPF 125 (194)
T d1w5fa1 71 ALESEEKIREVLQDTHMVFITAGFGGGTG---T----GASPVIAKIAKEMGI----LTVAIVTTPF 125 (194)
T ss_dssp HHHTHHHHHHHTTTCSEEEEEEETTSSHH---H----HHHHHHHHHHHHTTC----EEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCcc---c----chHHHHHHHHHHcCC----ceEEEEeech
Confidence 011 35899999999987543221 1 224566666666432 2345556564
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.81 E-value=0.091 Score=44.37 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=43.7
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCC-CCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCccccCCCcEEEEe
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGI-YSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDIAMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l-~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~eal~dADiVIit 252 (488)
+++||+|+|| |.+|.-+...|...++ ..+|.++--+.. .|. .+. + ....+.. ..+.+.+.++|+++++
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~--~Gk--~i~----~-~~~~~~~~~~~~~~~~~~d~vf~a 71 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES--AGQ--RMG----F-AESSLRVGDVDSFDFSSVGLAFFA 71 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT--TTC--EEE----E-TTEEEECEEGGGCCGGGCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc--CCc--cee----e-ccccchhccchhhhhccceEEEec
Confidence 4689999999 9999999888876543 358888765332 111 011 0 1112221 2234678899999998
Q ss_pred cc
Q psy12825 253 AG 254 (488)
Q Consensus 253 ag 254 (488)
.+
T Consensus 72 ~p 73 (144)
T d2hjsa1 72 AA 73 (144)
T ss_dssp SC
T ss_pred CC
Confidence 63
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.70 E-value=0.054 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.4
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMA 155 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la 155 (488)
.||+|||+|..|++||+.+..+++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~ 29 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYS 29 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred CEEEEECChHHHHHHHHHHHHCCCC
Confidence 5999999999999999998877664
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=90.63 E-value=0.12 Score=44.26 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEE-EeCChh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCL-IDSNED 213 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L-~Di~~e 213 (488)
++.||+|||+|.+|......++..-...||+. .|++.+
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~ 41 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchh
Confidence 56799999999999865444444322236655 587764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.62 E-value=0.049 Score=43.88 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=30.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+.+++|||+|.+|.-+|..|...|. +++|++..+
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~g~--~Vtlve~~~ 54 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKLGA--QVSVVEARE 54 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHhhccc--ceEEEeeec
Confidence 35799999999999999999988886 899998743
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.60 E-value=0.17 Score=45.77 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=40.6
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhh
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQH 224 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~ 224 (488)
.+.+.+.|+|| +.+|..++..|+..|. +|++.|++++.++....++..
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~ 51 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGN 51 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCC
Confidence 45566778898 8899999999999998 899999999988887777753
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=90.50 E-value=0.2 Score=43.31 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
-....++++|+|-|.+|.++|..+...+- .|..+++|+-++ |+..+. ..++ .+-.++++.+|++|.+
T Consensus 19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga--~V~V~E~DPi~a------lqA~md---Gf~v--~~~~~a~~~aDi~vTa 85 (163)
T d1v8ba1 19 FLISGKIVVICGYGDVGKGCASSMKGLGA--RVYITEIDPICA------IQAVME---GFNV--VTLDEIVDKGDFFITC 85 (163)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSCHHHH------HHHHTT---TCEE--CCHHHHTTTCSEEEEC
T ss_pred ceecCCEEEEecccccchhHHHHHHhCCC--EEEEEecCchhh------HHHHhc---CCcc--CchhHccccCcEEEEc
Confidence 44578999999999999999999977776 899999998432 111111 1222 2223789999999998
Q ss_pred cc
Q psy12825 253 AG 254 (488)
Q Consensus 253 ag 254 (488)
.|
T Consensus 86 TG 87 (163)
T d1v8ba1 86 TG 87 (163)
T ss_dssp CS
T ss_pred CC
Confidence 65
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.38 E-value=0.13 Score=42.62 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=30.8
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
++++|+|||+|.+|.-+|..|...+. ++.+++..+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~--~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANM--HVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCc--ceeeeeecc
Confidence 45799999999999999999998887 899999743
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=90.31 E-value=0.2 Score=45.38 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=42.4
Q ss_pred CCCceEEEEecccchH----HHHHHHHHcCCCCeEE-EEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-c--CCC
Q psy12825 175 SPDQKITVVGAGQVGM----ACTYSILTQGIYSNFC-LIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-S--EGS 246 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~----~ia~~La~~~l~~el~-L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l--~dA 246 (488)
.+++||+|||+|.+|. .....+.......+|+ ++|++.++++.....+. ........|+++ + .+-
T Consensus 14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~i 86 (237)
T d2nvwa1 14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-------LKHATGFDSLESFAQYKDI 86 (237)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-------CTTCEEESCHHHHHHCTTC
T ss_pred CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc-------cccceeecchhhccccccc
Confidence 4678999999988542 2233343322222555 89999987765544331 111222356643 2 578
Q ss_pred cEEEEec
Q psy12825 247 RIVIITA 253 (488)
Q Consensus 247 DiVIita 253 (488)
|+|+++.
T Consensus 87 D~V~i~t 93 (237)
T d2nvwa1 87 DMIVVSV 93 (237)
T ss_dssp SEEEECS
T ss_pred ceeeccC
Confidence 8999984
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=90.27 E-value=0.092 Score=46.05 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=43.4
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
+.++.||+|+|| |.+|.-+...|.....+ +|..+--+.. ......+.............. ..+.+.+.++|+|+.+
T Consensus 2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~-aG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dvvf~a 78 (183)
T d2cvoa1 2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRK-AGEQFGSVFPHLITQDLPNLV-AVKDADFSNVDAVFCC 78 (183)
T ss_dssp CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTT-TTSCHHHHCGGGTTSCCCCCB-CGGGCCGGGCSEEEEC
T ss_pred CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEecccc-CCCccccccccccccccccch-hhhhhhhcccceeeec
Confidence 456789999999 99999998888776533 6666643221 111122222111101111111 1122457899999998
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 79 l 79 (183)
T d2cvoa1 79 L 79 (183)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=90.13 E-value=0.12 Score=46.56 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=47.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHH--HHHHHHhhcCCCCCCCcEEEc--CCc----cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCK--GEMLDLQHGAPFLRSPKIESG--SDI----AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~--g~~~dL~~~~~~~~~~~v~~t--td~----eal~dA 246 (488)
+++||.|+|| |.+|++++..|+..|. +|+.++++..... .....+.+.. .....+... .+. +.++++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhhhhc
Confidence 4679999999 9999999999999886 8999988543211 1112222211 011233221 121 458899
Q ss_pred cEEEEecc
Q psy12825 247 RIVIITAG 254 (488)
Q Consensus 247 DiVIitag 254 (488)
|.|+..++
T Consensus 78 ~~vi~~~~ 85 (307)
T d1qyca_ 78 DVVISTVG 85 (307)
T ss_dssp SEEEECCC
T ss_pred eeeeeccc
Confidence 99888764
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=90.03 E-value=0.23 Score=45.94 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=53.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+.+.|.|| +.+|..++..|+..|. +|++.|+++++++....++.... . ....| .
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~------~-~~~~Dv~~~~~~~~~~~~~~ 74 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGDNV------L-GIVGDVRSLEDQKQAASRCV 74 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGE------E-EEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCe------e-EEecccccHHHHHHHHHHHH
Confidence 4567888898 8999999999999997 89999999998887766664321 0 11111 1
Q ss_pred cccCCCcEEEEecccc
Q psy12825 241 AMSEGSRIVIITAGVR 256 (488)
Q Consensus 241 eal~dADiVIitag~~ 256 (488)
+.+...|++|..+|..
T Consensus 75 ~~~g~idilvnnAG~~ 90 (276)
T d1bdba_ 75 ARFGKIDTLIPNAGIW 90 (276)
T ss_dssp HHHSCCCEEECCCCCC
T ss_pred HHhCCccccccccccc
Confidence 3466889999998853
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.89 E-value=0.085 Score=46.57 Aligned_cols=31 Identities=13% Similarity=0.387 Sum_probs=24.7
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+.||+|||+|.+|.++||.|.-++. ++.++|
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~--~V~vie 36 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGY--SVHILA 36 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTC--EEEEEE
T ss_pred CCcEEEECccHHHHHHHHHHHHCCC--CEEEEe
Confidence 3599999999999999999876665 344554
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=89.78 E-value=1.1 Score=40.39 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=83.1
Q ss_pred EEEEec-ccchHHHHHHHHHcCCCCeEEEEeC-ChhHHHHHHHHHhhcCCCCCCCcE-EEcCCc--------------cc
Q psy12825 180 ITVVGA-GQVGMACTYSILTQGIYSNFCLIDS-NEDRCKGEMLDLQHGAPFLRSPKI-ESGSDI--------------AM 242 (488)
Q Consensus 180 IaIIGA-G~vG~~ia~~La~~~l~~el~L~Di-~~e~l~g~~~dL~~~~~~~~~~~v-~~ttd~--------------ea 242 (488)
|.|.|| +.+|..++..|+..|. +|++.|. +++.++....++...- .++ ....|. +.
T Consensus 4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (244)
T d1edoa_ 4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG-----GQAITFGGDVSKEADVEAMMKTAIDA 76 (244)
T ss_dssp EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT-----CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC-----CcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344477 8899999999999997 8888765 6667777666665431 121 122221 23
Q ss_pred cCCCcEEEEecccccCCC---cch---HhhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCch------hHHHHHHH
Q psy12825 243 SEGSRIVIITAGVRSLVG---ETR---LQLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPVD------VLTYISWK 306 (488)
Q Consensus 243 l~dADiVIitag~~~k~G---~~r---~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPvd------i~t~~~~k 306 (488)
+..-|++|..++...... .+. ...+.-|+ -..+...+.|.+. ..+.||+++--.. ...|...|
T Consensus 77 ~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~~~~~~~~~Y~asK 155 (244)
T d1edoa_ 77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGLIGNIGQANYAAAK 155 (244)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHHHCCTTCHHHHHHH
T ss_pred cCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhhcCCCCCCHHHHHHH
Confidence 567899999988653221 121 22334443 3557777777664 4566777764332 22333333
Q ss_pred hcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 307 LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 307 ~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
. -...+-+.+|..++ +..|++-.+
T Consensus 156 a---------------al~~ltk~lA~el~--~~gIrvN~I 179 (244)
T d1edoa_ 156 A---------------GVIGFSKTAAREGA--SRNINVNVV 179 (244)
T ss_dssp H---------------HHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred H---------------HHHHChHHHHHHHh--hhCcEEEEE
Confidence 2 12345666777773 455665444
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.77 E-value=0.82 Score=38.03 Aligned_cols=109 Identities=11% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCceEEEEec----ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccC-CCcEEE
Q psy12825 176 PDQKITVVGA----GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSE-GSRIVI 250 (488)
Q Consensus 176 ~~~KIaIIGA----G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~-dADiVI 250 (488)
+++.|+|||| +..|..++..|...|+ +|+.+....+...| +....+.+++. .-|+|+
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~~i~G----------------~~~~~sl~dlp~~iD~v~ 79 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYEEVLG----------------RKCYPSVLDIPDKIEVVD 79 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCSEETT----------------EECBSSGGGCSSCCSEEE
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcccccCC----------------CcccccccccCccceEEE
Confidence 3568999998 5678888888888887 78888765432211 11223555555 689988
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCCh
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTNL 322 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~l 322 (488)
+.. +.+.+.++.+++.+....++.+..+.-.+...+.+.+ .|+ +++|=-|.+
T Consensus 80 i~v----------------p~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~~~~a~~-~gi---~vig~~C~~ 131 (139)
T d2d59a1 80 LFV----------------KPKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADE-AGL---IIVANRCMM 131 (139)
T ss_dssp ECS----------------CHHHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHH-TTC---EEEESCCHH
T ss_pred EEe----------------CHHHHHHHHHHHHHhCCCEEEEeccccCHHHHHHHHH-CCC---EEEcCCcCh
Confidence 884 2345566666666666655433333333344444443 355 577654543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=89.60 E-value=1.4 Score=39.95 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=66.9
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEE-EcCC----c--------
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSD----I-------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd----~-------- 240 (488)
.+.+.|.|+|+ +.+|..+|..|+..|. .+++++.+.+..+.. .++..... ..++. ...| .
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~-~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~ 76 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTAL-AELKAINP---KVNITFHTYDVTVPVAESKKLLK 76 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHH-HHHHHHCT---TSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHH-HHHHhhCC---CCCEEEEEeecCCCHHHHHHHHH
Confidence 45677888898 7899999999999986 666665544444433 33332211 11111 1111 1
Q ss_pred ---cccCCCcEEEEecccccCCCcchHhhHhhhH----HHHHHHHHHHhcc--CCCcEEEEEe
Q psy12825 241 ---AMSEGSRIVIITAGVRSLVGETRLQLVDRNV----KIFKDLIPKIAKG--SPDCILLIIS 294 (488)
Q Consensus 241 ---eal~dADiVIitag~~~k~G~~r~dll~~N~----~ii~ei~~~I~~~--~p~a~vIv~T 294 (488)
+.+...|++|..+|...... -...+..|+ -..+.+.+.|.+. .+.+.||+++
T Consensus 77 ~~~~~~g~iDilvnnAG~~~~~~--~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is 137 (254)
T d1sbya1 77 KIFDQLKTVDILINGAGILDDHQ--IERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC 137 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCTTC--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred HHHHHcCCCCEEEeCCCCCCHHH--HHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence 23567999999998653322 223344443 3567777777654 3567777775
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.44 E-value=0.55 Score=43.81 Aligned_cols=168 Identities=11% Similarity=0.104 Sum_probs=90.7
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC----ChhHHHHHHHHHhhcCCCCCCCcEEEcC--Cc----ccc
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS----NEDRCKGEMLDLQHGAPFLRSPKIESGS--DI----AMS 243 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di----~~e~l~g~~~dL~~~~~~~~~~~v~~tt--d~----eal 243 (488)
+++++|.|+|| |.+|+.++..|...|. +|..+|. +...+... ..+...... ...++.... |. ...
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~d~~d~~~~~~~~ 89 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEV-RSLVSEKQW-SNFKFIQGDIRNLDDCNNAC 89 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHH-HHHSCHHHH-TTEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHH-HHhhhhccc-CCeeEEeecccccccccccc
Confidence 35678999999 9999999999999987 8999986 22222211 111110000 112222221 22 256
Q ss_pred CCCcEEEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc-----h-hHHHHHHHhcCCCCCcE
Q psy12825 244 EGSRIVIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV-----D-VLTYISWKLSGFPKNRV 315 (488)
Q Consensus 244 ~dADiVIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv-----d-i~t~~~~k~sg~p~~rV 315 (488)
.+.|.|+..+..... ........+..|+.....+.+...+.....+|..-|..+ + ..+ +.+-..|...
T Consensus 90 ~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~----E~~~~~p~~~ 165 (341)
T d1sb8a_ 90 AGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV----EDTIGKPLSP 165 (341)
T ss_dssp TTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC----TTCCCCCCSH
T ss_pred ccccccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCcc----CCCCCCCCCc
Confidence 778888877643221 112345566788888888888888776555444434221 0 000 1111222333
Q ss_pred EeecCChHHHHHHHHHHHHhCCCCCCcee-EEEeecC
Q psy12825 316 IGSGTNLDSMRFRVLLAQKLGLSPESVHG-FIIGEHG 351 (488)
Q Consensus 316 iG~gt~lds~R~~~~lA~~Lgv~p~~V~~-~V~G~HG 351 (488)
.|. +-+..-++-..+++..+++..-++. .|.|.++
T Consensus 166 Y~~-sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~ 201 (341)
T d1sb8a_ 166 YAV-TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ 201 (341)
T ss_dssp HHH-HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred chH-HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCc
Confidence 333 2233334445556666777665663 4788653
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.32 E-value=0.37 Score=43.23 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=33.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCC-CeEEEEeCChhHHH
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIY-SNFCLIDSNEDRCK 216 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~-~el~L~Di~~e~l~ 216 (488)
..||.|||.|..|..++..+...++. .+.+.+|.|.+.|.
T Consensus 15 ~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~ 55 (209)
T d2vapa1 15 KAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLI 55 (209)
T ss_dssp CCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHH
T ss_pred CCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHh
Confidence 47999999999999999988887753 47888899877654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.30 E-value=0.079 Score=43.36 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=29.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
+++|+|||+|.+|.-+|..|...|. +|.+++..+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~--~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGS--KTSLMIRHD 55 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCc--EEEEEeecc
Confidence 4799999999999999999988886 899998843
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.30 E-value=0.95 Score=42.29 Aligned_cols=112 Identities=11% Similarity=0.137 Sum_probs=68.7
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh---------hHHHHHHHHHhhcCCCCCCCcEEEcCCc------
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE---------DRCKGEMLDLQHGAPFLRSPKIESGSDI------ 240 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~---------e~l~g~~~dL~~~~~~~~~~~v~~ttd~------ 240 (488)
.+.+.|.|| +.+|..+|..|+..|. .|++.|++. +.++....++..... .... -.+|.
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-d~~~~~~~~~~ 80 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG---KAVA-NYDSVEAGEKL 80 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC---EEEE-ECCCGGGHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc---cccc-ccchHHHHHHH
Confidence 455666688 8899999999999997 899998743 345555555554321 0011 11121
Q ss_pred -----cccCCCcEEEEecccccCCC---cch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 241 -----AMSEGSRIVIITAGVRSLVG---ETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 241 -----eal~dADiVIitag~~~k~G---~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
+.+..-|++|..+|...... .+. ...+.-|+. ..+.+.+.|.+.. .+.||+++-
T Consensus 81 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS 149 (302)
T d1gz6a_ 81 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS 149 (302)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCC
Confidence 24667999999998754311 122 223444443 5677777777654 466777763
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.27 E-value=0.094 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=20.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhhh
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
.||+|||+|-+|+++||.|.-++.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~ 24 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYH 24 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCC
Confidence 389999999999999999876554
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.24 E-value=0.13 Score=43.95 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=29.3
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
-|+|||||..|.+.|..|+..|. +|.++|.++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~--~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGK--KVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence 48999999999999999999997 899999865
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.09 E-value=0.59 Score=39.65 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=35.9
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+..+..+|.|+|+|.+|...+..+...+. ..|+..|.++++++. +.++
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~~-a~~~ 72 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAK-AKEV 72 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHH-HHHT
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCC-ceEEeecCcHHHHHH-HHHh
Confidence 44566789999999999877777666553 489999999998873 4443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.09 E-value=0.22 Score=45.39 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=82.1
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC---c-----------
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD---I----------- 240 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd---~----------- 240 (488)
+.+.+.|.|+ +.+|..++..|+..|. .|++.|++++.. ....++... ... +....| .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~--~~~~~~~~g---~~~-~~~~~Dvs~~~~v~~~~~~~~ 75 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPE--AEAAIRNLG---RRV-LTVKCDVSQPGDVEAFGKQVI 75 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHH--HHHHHHHTT---CCE-EEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHH--HHHHHHHcC---CcE-EEEEeeCCCHHHHHHHHHHHH
Confidence 4556777788 8899999999999997 899999976422 122233221 111 111222 1
Q ss_pred cccCCCcEEEEecccccCCC---cchH---hhHhhhH----HHHHHHHHHHhccCCCcEEEEEeCCc------hhHHHHH
Q psy12825 241 AMSEGSRIVIITAGVRSLVG---ETRL---QLVDRNV----KIFKDLIPKIAKGSPDCILLIISNPV------DVLTYIS 304 (488)
Q Consensus 241 eal~dADiVIitag~~~k~G---~~r~---dll~~N~----~ii~ei~~~I~~~~p~a~vIv~TNPv------di~t~~~ 304 (488)
+.+-.-|++|..+|...... .+.. ..+.-|+ -..+.+.+.|.+.. .+.||+++--. +...|.+
T Consensus 76 ~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~~~~~~~Y~a 154 (247)
T d2ew8a1 76 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWLKIEAYTHYIS 154 (247)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGSCCSSCHHHHH
T ss_pred HHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhcccCcccccchh
Confidence 23567999999998653211 1222 2334443 35566777776654 46677775322 2334444
Q ss_pred HHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEE
Q psy12825 305 WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFII 347 (488)
Q Consensus 305 ~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~ 347 (488)
.|.. + ..+-+.+|..+ .+..|++-.+
T Consensus 155 sKaa---------l------~~ltk~lA~el--a~~gIrVN~I 180 (247)
T d2ew8a1 155 TKAA---------N------IGFTRALASDL--GKDGITVNAI 180 (247)
T ss_dssp HHHH---------H------HHHHHHHHHHH--GGGTEEEEEE
T ss_pred hhcc---------H------HHHHHHHHHHh--cccCeEEEEE
Confidence 4431 1 23566677777 3455665443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=89.07 E-value=0.091 Score=42.63 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=29.0
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
.+.||+|||+|.+|.-+|..|+..|. ++.++..
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~--~Vtiv~~ 53 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGA--EVTVLEA 53 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEEES
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCC--ceEEEEe
Confidence 45899999999999999999988776 8888875
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.05 E-value=0.5 Score=44.13 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=60.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCC----------hhHHHHHHHHHhhcCCCCCCCcEEEc--CCcc---
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSN----------EDRCKGEMLDLQHGAPFLRSPKIESG--SDIA--- 241 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~----------~e~l~g~~~dL~~~~~~~~~~~v~~t--td~e--- 241 (488)
+||.|+|| |.+|++++..|+..|. +|+.+|.. .+..+. ...+.. ...++... +|++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~Dl~d~~~l~ 74 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRR-VQELTG-----RSVEFEEMDILDQGALQ 74 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHH-HHHHHT-----CCCEEEECCTTCHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHH-HHHhcC-----CCcEEEEeecccccccc
Confidence 58999999 9999999999999887 88888741 122221 112211 12233322 2332
Q ss_pred -ccCCCc--EEEEecccccCC--CcchHhhHhhhHHHHHHHHHHHhccCCCc
Q psy12825 242 -MSEGSR--IVIITAGVRSLV--GETRLQLVDRNVKIFKDLIPKIAKGSPDC 288 (488)
Q Consensus 242 -al~dAD--iVIitag~~~k~--G~~r~dll~~N~~ii~ei~~~I~~~~p~a 288 (488)
.+.+.| +|+-+++.+... -....+.+..|+.-...+.....++....
T Consensus 75 ~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~ 126 (346)
T d1ek6a_ 75 RLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKN 126 (346)
T ss_dssp HHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccc
Confidence 344444 455455432110 01234556778888788888888776554
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.00 E-value=0.18 Score=40.80 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=29.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.++|+|||+|.+|.-+|..|...+. +++|++..+
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~--~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGY--HVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhcccc--eEEEEeccc
Confidence 3689999999999999999998886 899998744
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=88.96 E-value=0.13 Score=46.72 Aligned_cols=31 Identities=42% Similarity=0.741 Sum_probs=28.4
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
-|+|||||.+|.+.|+.|+.+|. +|+|+|..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~--~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGV--KTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC--cEEEEeCC
Confidence 38999999999999999999987 89999974
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.95 E-value=0.14 Score=50.91 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=30.2
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
..||.|||+|.+|+.++..|+..|+ .+|.|+|-|
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gv-g~i~lvD~D 70 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMD 70 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTC-CCEEEECCC
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEECC
Confidence 3599999999999999999999996 489999964
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=88.93 E-value=0.12 Score=41.57 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
.+.++|+|||+|.+|.-+|..|...+. ++.+++..+
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~--~vt~i~~~~ 55 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGR--RTVMLVRTE 55 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcch--hheEeeccc
Confidence 356899999999999999999887775 889998744
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=88.90 E-value=0.12 Score=46.82 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=20.9
Q ss_pred CcEEEEecchhHHHHHHHHHhhhh
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
.||+|||+|..|++|||-|..++.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~G~ 54 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGAGH 54 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHTC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC
Confidence 499999999999999998776654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.85 E-value=0.18 Score=41.07 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.9
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.+.+|+|||+|.+|.-+|..|...|. +|.|++.+
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~--~Vtii~~~ 52 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGL--DVTVMVRS 52 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCC--eEEEEEec
Confidence 45799999999999999998888775 88888764
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.78 E-value=0.11 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.9
Q ss_pred CcEEEEecchhHHHHHHHHHhhhh
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
.||+|||+|..|++||+.|..++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~ 26 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAAD 26 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHHHcCC
Confidence 499999999999999999998874
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.54 E-value=0.11 Score=45.54 Aligned_cols=78 Identities=14% Similarity=0.047 Sum_probs=43.3
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcC-CCC------CCCcEEEcCCc-cccCCCcE
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGA-PFL------RSPKIESGSDI-AMSEGSRI 248 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~-~~~------~~~~v~~ttd~-eal~dADi 248 (488)
|.||+|.|.|.+|..++..+..++-..-+.+-|..+.............. ... ....+....+. ..+.++|+
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDi 80 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDI 80 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSE
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCE
Confidence 56999999999999998888876533334445765543221111111000 000 01111122233 34678999
Q ss_pred EEEecc
Q psy12825 249 VIITAG 254 (488)
Q Consensus 249 VIitag 254 (488)
||.+.|
T Consensus 81 ViecTG 86 (178)
T d1b7go1 81 VVDTTP 86 (178)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999975
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.40 E-value=0.1 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.3
Q ss_pred cEEEEecchhHHHHHHHHHhhhh
Q psy12825 132 KITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 132 ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
||+|||+|..|++||+.|--+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~ 24 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGI 24 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTC
T ss_pred CEEEECCcHHHHHHHHHHHhCCC
Confidence 89999999999999999866654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=88.30 E-value=0.12 Score=46.02 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.6
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhh
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
..||+|||+|.+|.++|..+.-+++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~ 28 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGV 28 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCC
Confidence 3699999999999999998776665
|
| >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.23 E-value=0.78 Score=40.63 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=62.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCC-CeEEEEeCChhHHHHHHHHHhhcCCCCCCCc-EEEcCC-----------c----c
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIY-SNFCLIDSNEDRCKGEMLDLQHGAPFLRSPK-IESGSD-----------I----A 241 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~-~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~-v~~ttd-----------~----e 241 (488)
+|.|||-|..|..++..+...++. .+++.+|.|.+.+.....+-.-... ....+ .-...| . +
T Consensus 3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG-~~~t~G~Gagg~p~~g~~aa~e~~~~I~~ 81 (198)
T d1rq2a1 3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVG-RDSTRGLGAGADPEVGRKAAEDAKDEIEE 81 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCCCSEEEECC-TTTC-----CCCHHHHHHHHHHTHHHHHH
T ss_pred eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhcCCcchhhccc-cccccCCCcCcChhhhHhhHHHHHHHHHH
Confidence 788999999999999999888753 3788888887655431100000000 00010 000111 1 4
Q ss_pred ccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 242 MSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 242 al~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
.++++|+||+++|.....| . -=+|++.+++++.... .+-++|-|-
T Consensus 82 ~l~~~d~vfi~AGlGGgTG---t----GaaPviA~iake~g~l----~v~ivt~PF 126 (198)
T d1rq2a1 82 LLRGADMVFVTAGEGGGTG---T----GGAPVVASIARKLGAL----TVGVVTRPF 126 (198)
T ss_dssp HHTTCSEEEEEEETTSSHH---H----HHHHHHHHHHHHHTCE----EEEEEEECC
T ss_pred HhcCCCEEEEEEecCCCCC---c----chHHHHHHHHHHcCCc----EEEEEecCh
Confidence 6899999999997543322 2 2256777888876432 245566664
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.05 E-value=0.15 Score=47.75 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=29.9
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
|.+|+|||||..|.++|+.|+..|. +|.++|.++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~--~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNK--KVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCC--cEEEEECCC
Confidence 4579999999999999999988876 899999864
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.04 E-value=0.44 Score=40.07 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=35.4
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
..+..+|.|+|+|.+|...++.+...|. +++.+|.++++++ .+.++
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~-~a~~~ 70 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGL--HVAAIDIDDAKLE-LARKL 70 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHH-HHHHT
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCC--ccceecchhhHHH-hhhcc
Confidence 3456699999999999887776666664 8999999998876 34444
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=88.03 E-value=0.3 Score=42.25 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=41.4
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeC--ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDS--NEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di--~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
|+||+|+|| |.+|.-+...|.....+ +|.-+-. ..........+............+....+. ....++|+|+.+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~a 79 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLA 79 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEEC
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecc
Confidence 689999999 99999999988877533 4433321 111110111111111111112233333344 357899999998
Q ss_pred c
Q psy12825 253 A 253 (488)
Q Consensus 253 a 253 (488)
.
T Consensus 80 l 80 (179)
T d2g17a1 80 T 80 (179)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.97 E-value=1.4 Score=40.95 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=46.4
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc-----cccCCCc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI-----AMSEGSR 247 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~-----eal~dAD 247 (488)
++++|+|+|| |.+|++++..|+..|. +|+.+-++.+.... ..+... ....+... .|. .++.++|
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~--~~~~~~----~~v~~~~gD~~d~~~~~~~a~~~~~ 73 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIA--EELQAI----PNVTLFQGPLLNNVPLMDTLFEGAH 73 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHH--HHHHTS----TTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhh--hhhccc----CCCEEEEeeCCCcHHHHHHHhcCCc
Confidence 4679999999 9999999999999887 78888776554432 222221 11233322 121 3688999
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
.++...
T Consensus 74 ~~~~~~ 79 (350)
T d1xgka_ 74 LAFINT 79 (350)
T ss_dssp EEEECC
T ss_pred eEEeec
Confidence 888764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=87.96 E-value=0.21 Score=45.33 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=46.6
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH-HHHHHhhcCCCCCCCcEEEc--CCc----cccCCCc
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG-EMLDLQHGAPFLRSPKIESG--SDI----AMSEGSR 247 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g-~~~dL~~~~~~~~~~~v~~t--td~----eal~dAD 247 (488)
+++||.|+|| |.+|..++..|+..|. +|+.++++...... ....+.... ....++... +|. +.+++++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~--~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc--cCCcEEEEeecccchhhhhhccCcc
Confidence 4678999998 9999999999999886 88888875421111 111111111 012233221 122 4689999
Q ss_pred EEEEecc
Q psy12825 248 IVIITAG 254 (488)
Q Consensus 248 iVIitag 254 (488)
.++..++
T Consensus 78 ~~~~~~~ 84 (312)
T d1qyda_ 78 VVISALA 84 (312)
T ss_dssp EEEECCC
T ss_pred hhhhhhh
Confidence 9998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.88 E-value=0.36 Score=40.95 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=48.9
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCC--c--cccCCCcE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSD--I--AMSEGSRI 248 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd--~--eal~dADi 248 (488)
+..+..+|.|+|+|.+|...++.+...|. +++.+|.++++++ .+.++-- ..-+....+ . ......|+
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~--~vi~~~~~~~k~~-~a~~lGa------~~~i~~~~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKRE-DAMKMGA------DHYIATLEEGDWGEKYFDTFDL 94 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHH-HHHHHTC------SEEEEGGGTSCHHHHSCSCEEE
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccc--cccccccchhHHH-HhhccCC------cEEeeccchHHHHHhhhcccce
Confidence 34456799999999999887766656675 8899999998886 3455431 111211222 1 23557899
Q ss_pred EEEecccc
Q psy12825 249 VIITAGVR 256 (488)
Q Consensus 249 VIitag~~ 256 (488)
||.+++..
T Consensus 95 vi~~~~~~ 102 (168)
T d1piwa2 95 IVVCASSL 102 (168)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 99886543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=87.82 E-value=0.17 Score=44.99 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=29.6
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
-|+|||||..|...|..|+..|+ +|+|+|.++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~--~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGA--NVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCCC
Confidence 48999999999999999999998 8999998653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.81 E-value=0.16 Score=38.51 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=27.4
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
+++|+|+|+|..|+-++.....-|+ +++.+|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~--~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGI--AVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTE--EEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCC--EEEEEcCCCC
Confidence 4689999999999876665545565 9999998654
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=87.63 E-value=0.78 Score=41.96 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=55.8
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhH--HH-HHHHHHhhcCCCCCCCcEEEcCCccccCCCcEEEEe
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDR--CK-GEMLDLQHGAPFLRSPKIESGSDIAMSEGSRIVIIT 252 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~--l~-g~~~dL~~~~~~~~~~~v~~ttd~eal~dADiVIit 252 (488)
++||.|+|| |.+|++++..|+.++. .++++|...+. .. ....++- ...+.|+|+..
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~~~~~~~~~~~~~~------------------~~~~~d~v~~~ 61 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDELNLLDSRAVHDFF------------------ASERIDQVYLA 61 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTTCCTTCHHHHHHHH------------------HHHCCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchhccccCHHHHHHHH------------------hhcCCCEEEEc
Confidence 569999999 9999999999998886 56666653220 00 0000110 11246778777
Q ss_pred cccccC---CCcchHhhHhhhHHHHHHHHHHHhccCCCc
Q psy12825 253 AGVRSL---VGETRLQLVDRNVKIFKDLIPKIAKGSPDC 288 (488)
Q Consensus 253 ag~~~k---~G~~r~dll~~N~~ii~ei~~~I~~~~p~a 288 (488)
+..... ......+.+..|+..-..+...+.+..-.-
T Consensus 62 a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~ 100 (315)
T d1e6ua_ 62 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK 100 (315)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred chhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 632211 012344556778888888888887775443
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.16 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=21.5
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhh
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
+.||+|||+|-.|.+||+-|.-++.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~ 29 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGM 29 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC
Confidence 3599999999999999998876654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=87.51 E-value=0.12 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.713 Sum_probs=20.4
Q ss_pred CcEEEEecchhHHHHHHHHHhhhh
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
.||+|||+|..|++|||-+--+++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~ 25 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGL 25 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC
Confidence 589999999999999998765544
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.44 E-value=2 Score=34.93 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.9
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCC
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGI 201 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l 201 (488)
|||+|+|+ |.||+.++..+...+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~ 25 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGH 25 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC
Confidence 69999998 9999998876666554
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.42 E-value=0.37 Score=43.80 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=36.9
Q ss_pred eEEEE-ec-ccchHHHHHHHHH---cCCCCeEEEEeCChhHHHHHHHHHhhc
Q psy12825 179 KITVV-GA-GQVGMACTYSILT---QGIYSNFCLIDSNEDRCKGEMLDLQHG 225 (488)
Q Consensus 179 KIaII-GA-G~vG~~ia~~La~---~~l~~el~L~Di~~e~l~g~~~dL~~~ 225 (488)
||+|| || +.+|..+|..|+. +|. .|++.|+++++++....++...
T Consensus 7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~ 56 (259)
T d1oaaa_ 7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQ 56 (259)
T ss_dssp EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhh
Confidence 66666 87 7889999999985 344 8999999999999888888754
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.16 E-value=1.5 Score=39.47 Aligned_cols=109 Identities=9% Similarity=0.006 Sum_probs=66.3
Q ss_pred eEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc--------cccCCCcEE
Q psy12825 179 KITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI--------AMSEGSRIV 249 (488)
Q Consensus 179 KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~--------eal~dADiV 249 (488)
...|.|| +.+|..+|..|+..|. .|++.|++.+.++.......... ...+....+. +.+-.-|++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~----~~dv~~~~~~~~~~~~~~~~~G~iDiL 75 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYP----QLKPMSEQEPAELIEAVTSAYGQVDVL 75 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCT----TSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEE----EeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4567898 7899999999999997 89999998877764433222211 1222211221 345679999
Q ss_pred EEeccccc--CC--CcchHh---hHhhh----HHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 250 IITAGVRS--LV--GETRLQ---LVDRN----VKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 250 Iitag~~~--k~--G~~r~d---ll~~N----~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
|..+|... ++ ..+..+ .+..| .-..+.+.+.|.+.. .+.||+++
T Consensus 76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~is 130 (252)
T d1zmta1 76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFIT 130 (252)
T ss_dssp EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccc
Confidence 99887542 22 122222 22333 335677777777654 45566765
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.00 E-value=1.7 Score=39.89 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=60.3
Q ss_pred ceEEEE-ec-ccchHHHHHHHHHcCCCCeEEEE---eCChhHHHHHHHHHhhcCCCCCCCcEE-EcCCc----------c
Q psy12825 178 QKITVV-GA-GQVGMACTYSILTQGIYSNFCLI---DSNEDRCKGEMLDLQHGAPFLRSPKIE-SGSDI----------A 241 (488)
Q Consensus 178 ~KIaII-GA-G~vG~~ia~~La~~~l~~el~L~---Di~~e~l~g~~~dL~~~~~~~~~~~v~-~ttd~----------e 241 (488)
+||++| || +.+|.++|..|+..|. .++++ ..+.+..+........... ...++. ...|. +
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~ 77 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALAC--PPGSLETLQLDVRDSKSVAAARE 77 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTC--CTTSEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhc--cCCceEEEeccccchHhhhhhhh
Confidence 688876 87 8899999999999875 33444 3344433333222322211 122222 22231 1
Q ss_pred c--cCCCcEEEEecccccCCC---cc---hHhhHhhhH----HHHHHHHHHHhccCCCcEEEEEe
Q psy12825 242 M--SEGSRIVIITAGVRSLVG---ET---RLQLVDRNV----KIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 242 a--l~dADiVIitag~~~k~G---~~---r~dll~~N~----~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
. -..-|++|..++...... .+ -...+.-|+ ...+.+.+.|.+.. .+.||+++
T Consensus 78 ~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~is 141 (285)
T d1jtva_ 78 RVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTG 141 (285)
T ss_dssp TCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred hccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEe
Confidence 1 146899999987643221 11 122334443 35677777777654 45566665
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.89 E-value=1.6 Score=36.82 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=42.4
Q ss_pred CCCceEEEEeccc-chHHHHHHHHHcCCCCeEEEEeC-----ChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCc
Q psy12825 175 SPDQKITVVGAGQ-VGMACTYSILTQGIYSNFCLIDS-----NEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG~-vG~~ia~~La~~~l~~el~L~Di-----~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dAD 247 (488)
.+..||++||-|+ |..+++..+..-|. ++.++-. +++.++.. .+.... ....+..+.|. +++++||
T Consensus 2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~d~~ea~~~ad 74 (163)
T d1pvva2 2 IKGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWA-EQNAAE----SGGSFELLHDPVKAVKDAD 74 (163)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHH-HHHHHH----HTCEEEEESCHHHHTTTCS
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHH-HHhhhc----ccceEEEecCHHHHhhhcc
Confidence 4678999999844 32333333333344 8888854 33333322 222221 13466677786 6899999
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
+|..+.
T Consensus 75 viy~~~ 80 (163)
T d1pvva2 75 VIYTDV 80 (163)
T ss_dssp EEEECC
T ss_pred EEeecc
Confidence 888764
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=86.67 E-value=1 Score=39.88 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=48.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cc-cCCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AM-SEGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-ea-l~dADiVI 250 (488)
...+.++|+|-|.|.||+.++..|...|. .|+.+|++.+++... ..+. .+. .+. +. -.+||+++
T Consensus 23 ~~L~gk~v~IqG~G~VG~~~A~~L~~~Ga--kvvv~d~d~~~~~~~-~~~g--------~~~---~~~~~~~~~~~DI~i 88 (201)
T d1c1da1 23 GSLDGLTVLVQGLGAVGGSLASLAAEAGA--QLLVADTDTERVAHA-VALG--------HTA---VALEDVLSTPCDVFA 88 (201)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT--------CEE---CCGGGGGGCCCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEecchHHHHHHH-Hhhc--------ccc---cCccccccccceeee
Confidence 45788999999999999999999998886 899999998776532 2111 111 122 22 34899888
Q ss_pred Eec
Q psy12825 251 ITA 253 (488)
Q Consensus 251 ita 253 (488)
-++
T Consensus 89 PcA 91 (201)
T d1c1da1 89 PCA 91 (201)
T ss_dssp ECS
T ss_pred ccc
Confidence 876
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=0.37 Score=38.71 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=29.1
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
...||.|+|+|..|.-++.....-|+ +++.+|.+++
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~--~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGV--EVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTC--EEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCC--EEEEEcCCCC
Confidence 34689999999999887776655566 9999999876
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=86.45 E-value=0.19 Score=43.20 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=42.2
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCcEEEEe
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSRIVIIT 252 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dADiVIit 252 (488)
+.+||+|+|| |.||+.++..+...+-..=+..+|...... ...|+..... .....+..+.|+ +.++++|+||-.
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~--~g~d~~~~~~-~~~~~~~~~~~~~~~~~~~DViIDF 78 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL--LGSDAGELAG-AGKTGVTVQSSLDAVKDDFDVFIDF 78 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT--CSCCTTCSSS-SSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh--ccchhhhhhc-cccCCceeeccHHHHhcccceEEEe
Confidence 4579999998 999999988887764211123456532211 1122222211 112233445566 468899988765
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=86.41 E-value=1.2 Score=39.75 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=55.6
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccC--CCcEEE
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSE--GSRIVI 250 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~--dADiVI 250 (488)
|||.|+|| |.+|++++..|...+ +++.+|.+..... .|+ +|+ +.++ +.|+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~~~---~Dl---------------~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKEFC---GDF---------------SNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSSSC---CCT---------------TCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcccc---CcC---------------CCHHHHHHHHHHcCCCEEE
Confidence 78999999 999999998887665 4566665432100 000 122 1233 359999
Q ss_pred EecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 251 ITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 251 itag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
-+++.... ...........|......+.....+.+ .++++++
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~s 103 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYS 103 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEE
T ss_pred EecccccccccccCccccccccccccccchhhhhccc--ccccccc
Confidence 98864321 112334445667777777777776654 3455554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.39 E-value=0.19 Score=44.96 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=21.5
Q ss_pred CCCcEEEEecchhHHHHHHHHHhhhh
Q psy12825 129 PDQKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 129 ~~~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
...||.|||+|..|++||+.+-.+++
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~ 73 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGY 73 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred CCceEEEEcccHHHHHHHHHHHHhcc
Confidence 44699999999999999998765553
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.14 E-value=0.25 Score=45.04 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=27.9
Q ss_pred EEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 180 ITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 180 IaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
|+|||||..|.+.|..|+..|+ +|+++|.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~--~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGL--NVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence 8999999999999999999997 899998643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=86.11 E-value=0.54 Score=40.19 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=35.8
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
..+..+|.|+|||.+|...++.+...|. ..|+.+|.++++++ .+.++
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~-~a~~l 72 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLK-LAEEI 72 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHH-HHHHT
T ss_pred CCCCCEEEEECCCccchhheeccccccc-cccccccccccccc-ccccc
Confidence 3456799999999999877666666564 47999999999886 34554
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=86.03 E-value=0.18 Score=47.44 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=25.4
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVST 161 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivli 161 (488)
.||+|||+|..|.+||+.|+-+++-.+++++
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vf 35 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLF 35 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEE
Confidence 4899999999999999998877665555554
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.89 E-value=0.2 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.5
Q ss_pred CcEEEEecchhHHHHHHHHHhhhh
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
.||+|||+|..|++||+.|...+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~ 25 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHS 25 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS
T ss_pred CeEEEECccHHHHHHHHHHHhcCC
Confidence 399999999999999998875543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=85.73 E-value=0.12 Score=42.17 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
-+.+++|||+|.+|.-+|..+...|. +|.+++..+
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~--~Vtvi~~~~ 58 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGS--EVTVVEFAS 58 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCC--eEEEEEEcc
Confidence 35799999999999999999988886 899997743
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=85.54 E-value=0.11 Score=42.74 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhH
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDR 214 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~ 214 (488)
++.+|+|+|||.+|..++..+....-..-+.++|-|+++
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k 40 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK 40 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence 456899999999999877654333222357788988753
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.54 E-value=1.9 Score=39.22 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=64.7
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCCc---ccc------CCC
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSDI---AMS------EGS 246 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd~---eal------~dA 246 (488)
++|.|+|| |.+|++++..|+.+|. +|+-+|.....-. ...+.+.. ...++.. ..|. +.+ ...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~--~~~l~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 73 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDT--RWRLRELG---IEGDIQYEDGDMADACSVQRAVIKAQP 73 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCC--CHHHHHTT---CGGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCccc--HHHHHHhc---ccCCcEEEEccccChHHhhhhhccccc
Confidence 58999999 9999999999999987 8998887432110 01111111 1122221 2232 111 135
Q ss_pred cEEEEecccccC--CCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEe
Q psy12825 247 RIVIITAGVRSL--VGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIIS 294 (488)
Q Consensus 247 DiVIitag~~~k--~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~T 294 (488)
++++.++..... .-......+..|+.-...+.+.+.++.+...++..|
T Consensus 74 ~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~S 123 (321)
T d1rpna_ 74 QEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS 123 (321)
T ss_dssp SEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred cccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCccccccc
Confidence 566665533211 112344556778887888888888887776666654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=85.28 E-value=0.28 Score=44.15 Aligned_cols=34 Identities=21% Similarity=0.515 Sum_probs=30.5
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
..|.|||||..|...|..++..+. +|+|+|.++.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~--~V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGK--SVTVFDNGKK 38 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCC--cEEEEecCCC
Confidence 469999999999999999999987 8999998764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.19 E-value=0.73 Score=37.42 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=29.3
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.+.+++|||+|.+|.-+|..+...|. ++++++..
T Consensus 25 ~p~~vvIiGgG~IG~E~A~~~~~~G~--~Vtive~~ 58 (125)
T d1ojta2 25 VPGKLLIIGGGIIGLEMGTVYSTLGS--RLDVVEMM 58 (125)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTC--EEEEECSS
T ss_pred cCCeEEEECCCHHHHHHHHHhhcCCC--EEEEEEee
Confidence 45799999999999999998888776 89999763
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.18 E-value=2.3 Score=37.93 Aligned_cols=114 Identities=11% Similarity=0.174 Sum_probs=64.4
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhc-CCCCCCCcEEEc-CC-ccccCCCcEEE
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHG-APFLRSPKIESG-SD-IAMSEGSRIVI 250 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~-~~~~~~~~v~~t-td-~eal~dADiVI 250 (488)
.+.+++.|.|| +.+|..++..|+..|. +|++.|++++.++.. ... ........+... .. .+.+..-|++|
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~----~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV 78 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGL----FGVEVDVTDSDAVDRAFTAVEEHQGPVEVLV 78 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTS----EEEECCTTCHHHHHHHHHHHHHHHSSCSEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCc----eEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence 35677888898 8899999999999997 899999987644321 000 000000000000 00 13456789999
Q ss_pred EecccccCC---Ccch---HhhHhhhHH----HHHHHHHHHhccCCCcEEEEEeC
Q psy12825 251 ITAGVRSLV---GETR---LQLVDRNVK----IFKDLIPKIAKGSPDCILLIISN 295 (488)
Q Consensus 251 itag~~~k~---G~~r---~dll~~N~~----ii~ei~~~I~~~~p~a~vIv~TN 295 (488)
..+|..... ..+. ...+.-|+. ..+.+.+.+.+.. .+.||+++-
T Consensus 79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS 132 (237)
T d1uzma1 79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGS 132 (237)
T ss_dssp EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcc
Confidence 999865321 1222 223444433 4456666666554 455677653
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=84.97 E-value=0.21 Score=43.59 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred CcEEEEec-chhHHHHHHHHHhhhhHH
Q psy12825 131 QKITVVGA-GQVGMACTYSILTQTMAR 156 (488)
Q Consensus 131 ~ki~vvg~-g~vg~~~a~~~~~k~la~ 156 (488)
.||+|+|+ |+||.+++|.|..+.+..
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g 51 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFG 51 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTC
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccC
Confidence 59999996 999999999999877754
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=84.91 E-value=0.34 Score=45.53 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=63.5
Q ss_pred CCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEE-cCC---c----cccCCC
Q psy12825 176 PDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIES-GSD---I----AMSEGS 246 (488)
Q Consensus 176 ~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~-ttd---~----eal~dA 246 (488)
++|||.|+|| |.+|++++..|+.++..-.++.+|.-... +....+... ...++.. ..| + +.+.+.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~--~~~~~~~~~----~~~~i~~~~~Di~d~~~~~~~~~~~ 74 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA--GNKANLEAI----LGDRVELVVGDIADAELVDKLAAKA 74 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT--CCGGGTGGG----CSSSEEEEECCTTCHHHHHHHHTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcc--ccHHHHHHh----hcCCeEEEEccCCCHHHHHHHHhhh
Confidence 4789999998 99999999999998864456666741100 000111111 1123322 123 2 357889
Q ss_pred cEEEEecccccCCC--cchHhhHhhhHHHHHHHHHHHhccCC
Q psy12825 247 RIVIITAGVRSLVG--ETRLQLVDRNVKIFKDLIPKIAKGSP 286 (488)
Q Consensus 247 DiVIitag~~~k~G--~~r~dll~~N~~ii~ei~~~I~~~~p 286 (488)
|.|+..+....... ....+.+..|+.....+.........
T Consensus 75 ~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~ 116 (346)
T d1oc2a_ 75 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI 116 (346)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred hhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc
Confidence 99888875443221 12345567788888888877777764
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.85 E-value=0.036 Score=52.70 Aligned_cols=129 Identities=19% Similarity=0.290 Sum_probs=68.1
Q ss_pred CCceEEEEecccchHHHHHHHHHc----CC-----CCeEEEEeCChhHHHHHHHHHhh-cCCCCCCCcEEEcCCc-cccC
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQ----GI-----YSNFCLIDSNEDRCKGEMLDLQH-GAPFLRSPKIESGSDI-AMSE 244 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~----~l-----~~el~L~Di~~e~l~g~~~dL~~-~~~~~~~~~v~~ttd~-eal~ 244 (488)
+..||+|.|||+.|.+++..|... |+ .+.|+++|.+-=..++...++.. ...+.....-....++ ++++
T Consensus 24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~ 103 (294)
T d1pj3a1 24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN 103 (294)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHH
Confidence 345999999999999998876543 33 14799999732100100000110 0001100000001233 2333
Q ss_pred --CCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchh---HHHHHHHhcCCCCCcEEeec
Q psy12825 245 --GSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDV---LTYISWKLSGFPKNRVIGSG 319 (488)
Q Consensus 245 --dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi---~t~~~~k~sg~p~~rViG~g 319 (488)
+.|++|-+.+.+. . +-+++.+.|.+.+++.+|+-.+||..- ..+-+++.+. -+-+|..|
T Consensus 104 ~~kptvliG~S~~~g---~-----------ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~--grai~asG 167 (294)
T d1pj3a1 104 ILKPSTIIGVAGAGR---L-----------FTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTE--GRCLFASG 167 (294)
T ss_dssp HHCCSEEEECCCSSC---C-----------SCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTT--TCCEEEES
T ss_pred hcCCceEEEecCCCC---c-----------CCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhhcc--CceEeecC
Confidence 6777777654332 1 114556677788999999999999752 2334445442 13455554
Q ss_pred C
Q psy12825 320 T 320 (488)
Q Consensus 320 t 320 (488)
+
T Consensus 168 s 168 (294)
T d1pj3a1 168 S 168 (294)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=84.82 E-value=1.4 Score=39.74 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=50.5
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cc-cCCCcEEE
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-AM-SEGSRIVI 250 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-ea-l~dADiVI 250 (488)
...+.++|+|-|.|.||+.++..|...|- .|+..|++.+.++....+... .. .+. +- -.+||+++
T Consensus 35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Ga--kvv~~d~~~~~~~~~~~~~g~--------~~---~~~~~~~~~~cDIl~ 101 (230)
T d1leha1 35 DSLEGLAVSVQGLGNVAKALCKKLNTEGA--KLVVTDVNKAAVSAAVAEEGA--------DA---VAPNAIYGVTCDIFA 101 (230)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCC--------EE---CCGGGTTTCCCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEeecccHHHHHHHHHhcCC--------cc---cCCcccccccccEec
Confidence 45688999999999999999999988886 899999998877654333211 11 122 22 34899999
Q ss_pred Eecc
Q psy12825 251 ITAG 254 (488)
Q Consensus 251 itag 254 (488)
-++.
T Consensus 102 PcA~ 105 (230)
T d1leha1 102 PCAL 105 (230)
T ss_dssp ECSC
T ss_pred cccc
Confidence 9873
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=84.39 E-value=0.33 Score=45.51 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=31.0
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
...|+|||||..|...|..|...|+ +++++|.+++
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~--~v~i~Ek~~~ 41 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGR--SVHVIETAGD 41 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHhCCC--CEEEEEcCCC
Confidence 4579999999999999999998888 8999998764
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=84.38 E-value=1.6 Score=37.48 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=45.3
Q ss_pred CCCceEEEEecc--cchHHHHHHHHHcCCCCeEEEEeCCh----hHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCc
Q psy12825 175 SPDQKITVVGAG--QVGMACTYSILTQGIYSNFCLIDSNE----DRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 175 ~~~~KIaIIGAG--~vG~~ia~~La~~~l~~el~L~Di~~----e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dAD 247 (488)
.+..||+++|=| .|..+++..+..-|. +|+++-... +.+...+.+.... ....+..+.|. ++++++|
T Consensus 3 ~~~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~----~g~~~~~~~d~~~a~~~aD 76 (183)
T d1duvg2 3 FNEMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ----NGGNITLTEDVAKGVEGAD 76 (183)
T ss_dssp GGGCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH----TTCEEEEESCHHHHHTTCS
T ss_pred cCCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh----cCCceEEEechhhccccCC
Confidence 456799999954 455555555554465 899987622 1222223333222 23567777887 5899999
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
+|....
T Consensus 77 vvyt~~ 82 (183)
T d1duvg2 77 FIYTDV 82 (183)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 988774
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=84.36 E-value=0.24 Score=44.58 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.4
Q ss_pred ceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 178 QKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 178 ~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
|||.|+|| |.+|+.++..|..+|. +|+.+|+++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechh
Confidence 79999999 9999999999988887 899998753
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=84.27 E-value=0.28 Score=45.35 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=27.1
Q ss_pred eEEEEecccchHHHHHHHHH-----cCCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILT-----QGIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~-----~~l~~el~L~Di~~ 212 (488)
-|+|||||.+|.++|..|++ .|+ +++|+|.++
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~--~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDL--KVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence 49999999999999999975 366 899999743
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=84.19 E-value=0.78 Score=39.17 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=37.0
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHH
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDL 222 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL 222 (488)
+..+..+|.|+|+|.+|...++.+...+. ..|+..|+++++++ .+.++
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~-~a~~l 71 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFP-KAIEL 71 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHH-HHHHT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHH-HHHHc
Confidence 44566799999999999887776666663 47999999999887 34444
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.90 E-value=0.26 Score=44.81 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=25.4
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+.||.|||+|.+|.++|+.+--+++ ++.+++
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~--~v~vlE 32 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGI--DNVILE 32 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTC--CEEEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEe
Confidence 3589999999999999999988887 344453
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=83.83 E-value=0.73 Score=41.72 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=51.3
Q ss_pred CCCceEEEEec-c--cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CC----------
Q psy12825 175 SPDQKITVVGA-G--QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SD---------- 239 (488)
Q Consensus 175 ~~~~KIaIIGA-G--~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td---------- 239 (488)
.+.+++.|+|| | .+|.++|..|+..|. +|++.|++++..+ .+.++..... ...+... ++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~-~~~~l~~~~~---~~~~~~~d~~~~~~~~~~~~~ 76 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEK-RVRPIAQELN---SPYVYELDVSKEEHFKSLYNS 76 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHH-HHHHHHHHTT---CCCEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHHHHhhCC---ceeEeeecccchhhHHHHHHH
Confidence 46788999997 5 599999999999998 8999999865333 4555554321 1122211 11
Q ss_pred -ccccCCCcEEEEecccc
Q psy12825 240 -IAMSEGSRIVIITAGVR 256 (488)
Q Consensus 240 -~eal~dADiVIitag~~ 256 (488)
.+.+...|++|..++..
T Consensus 77 ~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 77 VKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp HHHHTSCEEEEEECCCCC
T ss_pred HHHHcCCCCeEEeecccc
Confidence 13467899999988754
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.81 E-value=2.6 Score=33.56 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=48.4
Q ss_pred ceEEEEec----ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccC-CCcEEEEe
Q psy12825 178 QKITVVGA----GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSE-GSRIVIIT 252 (488)
Q Consensus 178 ~KIaIIGA----G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~-dADiVIit 252 (488)
+.|+|||| +..|..+...|...|+ +|+.+..+.+... -+....+.+++. .-|++++.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~~i~----------------G~~~y~sl~~lp~~~D~vvi~ 63 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYDEIE----------------GLKCYRSVRELPKDVDVIVFV 63 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCSEET----------------TEECBSSGGGSCTTCCEEEEC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEcccccccc----------------CccccccchhccccceEEEEE
Confidence 57999997 5678888888888888 7888865432211 122234555655 45999988
Q ss_pred cccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCc
Q psy12825 253 AGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDC 288 (488)
Q Consensus 253 ag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a 288 (488)
. ..+.+.++.+++.+..+.+
T Consensus 64 v----------------p~~~~~~~l~~~~~~g~k~ 83 (116)
T d1y81a1 64 V----------------PPKVGLQVAKEAVEAGFKK 83 (116)
T ss_dssp S----------------CHHHHHHHHHHHHHTTCCE
T ss_pred e----------------CHHHHHHHHHHHHhcCCce
Confidence 4 2234445555555555554
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.44 E-value=0.4 Score=41.79 Aligned_cols=32 Identities=16% Similarity=0.422 Sum_probs=28.6
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
=|+|||+|+.|.+.|..++..+. +++|+|..+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~--kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGF--NTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC--cEEEEEecC
Confidence 48999999999999999999887 899999753
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=83.23 E-value=3.8 Score=33.45 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=62.1
Q ss_pred CCceEEEEec----ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccccC-CCcEEE
Q psy12825 176 PDQKITVVGA----GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAMSE-GSRIVI 250 (488)
Q Consensus 176 ~~~KIaIIGA----G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~eal~-dADiVI 250 (488)
+++.|+|||| +..|..+...|...++ .+.++-.++..- ++ ..+....+..++. ..|+|+
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~-----~i---------~g~~~~~~l~~i~~~iD~v~ 75 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGE-----EL---------FGEEAVASLLDLKEPVDILD 75 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTS-----EE---------TTEECBSSGGGCCSCCSEEE
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccc-----ee---------eceecccchhhccCCCceEE
Confidence 4568999998 6778888888888887 788888764200 01 1223334556664 579999
Q ss_pred EecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCchhHHHHHHHhcCCCCCcEEeecCC
Q psy12825 251 ITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVDVLTYISWKLSGFPKNRVIGSGTN 321 (488)
Q Consensus 251 itag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvdi~t~~~~k~sg~p~~rViG~gt~ 321 (488)
+.. +.+.+.++.+++.+....++++.-+--.+-+.+++. ..|+ ++|+=.|.
T Consensus 76 v~~----------------p~~~v~~~v~~~~~~g~k~i~~q~G~~~~e~~~~a~-~~Gi---~vV~~~C~ 126 (136)
T d1iuka_ 76 VFR----------------PPSALMDHLPEVLALRPGLVWLQSGIRHPEFEKALK-EAGI---PVVADRCL 126 (136)
T ss_dssp ECS----------------CHHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHHHH-HTTC---CEEESCCH
T ss_pred Eec----------------cHHHHHHHHHHHHhhCCCeEEEecCccCHHHHHHHH-HcCC---EEEcCCcc
Confidence 984 223344444444445555533322222333444443 3466 46654354
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=83.17 E-value=0.15 Score=44.64 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=39.9
Q ss_pred CceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCccc-cCCCcEEEEec
Q psy12825 177 DQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDIAM-SEGSRIVIITA 253 (488)
Q Consensus 177 ~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~ea-l~dADiVIita 253 (488)
|+||+|+|| |.+|.-+...|.....+ +|..+=-+. .......++.... .....+ ...+.++ .+++|+|+.+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~-~aG~~i~~~~p~~--~~~~~~-~~~~~~~~~~~~dvvf~a~ 74 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRT-YAGKKLEEIFPST--LENSIL-SEFDPEKVSKNCDVLFTAL 74 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECST-TTTSBHHHHCGGG--CCCCBC-BCCCHHHHHHHCSEEEECC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccc-cCCCcccccCchh--hccccc-cccCHhHhccccceEEEcc
Confidence 579999999 99999998888776533 555552221 1111122221111 011111 1234443 46899999985
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=83.07 E-value=0.7 Score=41.56 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCCCceEEEEec-cc--chHHHHHHHHHcCCCCeEEEEeCChhHH
Q psy12825 174 ESPDQKITVVGA-GQ--VGMACTYSILTQGIYSNFCLIDSNEDRC 215 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~--vG~~ia~~La~~~l~~el~L~Di~~e~l 215 (488)
.++.++|.|.|| |+ +|.++|..|+..|. +|+|.+.+.+++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL 45 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSCHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCChHHH
Confidence 456788999996 54 89999999999997 899999987655
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=83.03 E-value=0.28 Score=43.24 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.5
Q ss_pred cEEEEecchhHHHHHHHHHhhh
Q psy12825 132 KITVVGAGQVGMACTYSILTQT 153 (488)
Q Consensus 132 ki~vvg~g~vg~~~a~~~~~k~ 153 (488)
||+|||+|..|++||+.+--++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G 23 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRG 23 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTT
T ss_pred eEEEECCCHHHHHHHHHHHhCC
Confidence 7999999999999999886554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=82.95 E-value=0.84 Score=38.73 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc----cccCCCcE
Q psy12825 174 ESPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI----AMSEGSRI 248 (488)
Q Consensus 174 ~~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~----eal~dADi 248 (488)
..+..+|.|.|| |.+|...++.+...|. +++..+.++++++. +.++. + ..+.-..+. .+..++|+
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~-~~~lG--a-----~~~i~~~~~~~~~~~~~g~D~ 94 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLAL-PLALG--A-----EEAATYAEVPERAKAWGGLDL 94 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHH-HHHTT--C-----SEEEEGGGHHHHHHHTTSEEE
T ss_pred CCCCCEEEEEeccccchhhhhhhhccccc--cccccccccccccc-ccccc--c-----ceeeehhhhhhhhhccccccc
Confidence 345678999997 9999877666666676 78888888776653 33331 1 122222221 35678999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
||.+.|. + + -..++-..|.+.++.++++.
T Consensus 95 v~d~~G~--------------~---~---~~~~~~l~~~G~~v~~G~~~ 123 (171)
T d1iz0a2 95 VLEVRGK--------------E---V---EESLGLLAHGGRLVYIGAAE 123 (171)
T ss_dssp EEECSCT--------------T---H---HHHHTTEEEEEEEEEC----
T ss_pred cccccch--------------h---H---HHHHHHHhcCCcEEEEeCCC
Confidence 9987640 1 1 12344456788888887654
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=82.56 E-value=0.27 Score=42.13 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=29.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
.+..+|+|||+|+.|..-|..++..++ +++++|..
T Consensus 3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~--~v~iie~~ 37 (190)
T d1trba1 3 TKHSKLLILGSGPAGYTAAVYAARANL--QPVLITGM 37 (190)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEEee
Confidence 345689999999999998888888887 78888853
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=82.51 E-value=0.34 Score=40.10 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.6
Q ss_pred CcEEEEecchhHHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSIL 150 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~ 150 (488)
.||+|||+|.+|+.+|..|.
T Consensus 3 krivIvGgG~~G~e~A~~l~ 22 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIK 22 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHH
T ss_pred CcEEEECccHHHHHHHHHHH
Confidence 59999999999999987764
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.50 E-value=0.63 Score=41.27 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=60.7
Q ss_pred eEEEEecccchHHHHHHHHHcCCC-CeEEEEeCChhHHHHHH--------HHHhhcCCCCCCCcE---EEcCCc----cc
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIY-SNFCLIDSNEDRCKGEM--------LDLQHGAPFLRSPKI---ESGSDI----AM 242 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~-~el~L~Di~~e~l~g~~--------~dL~~~~~~~~~~~v---~~ttd~----ea 242 (488)
+|.|||-|..|..++..+...++. -+++.+|.|.+.|.... .++.........+++ -...+. +.
T Consensus 3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~I~~~ 82 (198)
T d1ofua1 3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERISEV 82 (198)
T ss_dssp CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHHHHHH
T ss_pred eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 689999999999999999888753 37888898876554210 000000000000000 000111 35
Q ss_pred cCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCc
Q psy12825 243 SEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPV 297 (488)
Q Consensus 243 l~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPv 297 (488)
++++|+||+++|.....| . .-+|++.+++++... -.+-++|=|-
T Consensus 83 l~~~d~vfi~AGlGGGTG---t----gaapviA~~ake~g~----lvvaivtlPF 126 (198)
T d1ofua1 83 LEGADMVFITTGMGGGTG---T----GAAPIIAEVAKEMGI----LTVAVVTRPF 126 (198)
T ss_dssp HTTCSEEEEEEETTSSHH---H----HHHHHHHHHHHHTTC----EEEEEEEECC
T ss_pred hCCCCeEEEEecCCCCcc---c----cHHHHHHHHHHHcCC----CEEEEEecch
Confidence 899999999987543222 1 234677777766432 2345556564
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=82.41 E-value=0.22 Score=47.11 Aligned_cols=126 Identities=18% Similarity=0.292 Sum_probs=68.2
Q ss_pred CCCceEEEEecccchHHHHHHHHHc----CC-----CCeEEEEeCChhHHHHHHHHHhhcC-CCCC-CCcEEEcCCc---
Q psy12825 175 SPDQKITVVGAGQVGMACTYSILTQ----GI-----YSNFCLIDSNEDRCKGEMLDLQHGA-PFLR-SPKIESGSDI--- 240 (488)
Q Consensus 175 ~~~~KIaIIGAG~vG~~ia~~La~~----~l-----~~el~L~Di~~e~l~g~~~dL~~~~-~~~~-~~~v~~ttd~--- 240 (488)
.+..||+|.|||+.|.+++..|+.. |+ ...++|+|.+-=..+. ..|+.+.. .+.. ... ..++
T Consensus 23 l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~-R~~l~~~k~~~a~~~~~---~~~l~~~ 98 (298)
T d1gq2a1 23 LSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKG-RASLTPEKEHFAHEHCE---MKNLEDI 98 (298)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTT-CSSCCTTGGGGCBSCCC---CCCHHHH
T ss_pred HHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCC-CcccCHHHHHHHHHhhh---hhhhHHH
Confidence 3446999999999999988877532 43 2479999973211000 01121110 0110 111 1122
Q ss_pred -cccCCCcEEEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCCch---hHHHHHHHhcCCCCCcEE
Q psy12825 241 -AMSEGSRIVIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNPVD---VLTYISWKLSGFPKNRVI 316 (488)
Q Consensus 241 -eal~dADiVIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNPvd---i~t~~~~k~sg~p~~rVi 316 (488)
+.++ .+++|-+.+.+ |. +-+++.+.|...+++.+|+-.+||.. ...+-+++.+. -+-+|
T Consensus 99 i~~vk-ptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~--G~ai~ 161 (298)
T d1gq2a1 99 VKDIK-PTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTE--GRGIF 161 (298)
T ss_dssp HHHHC-CSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTT--TCCEE
T ss_pred hhccC-hheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhcc--cceEE
Confidence 2233 55666654433 22 11445556777899999999999965 22333445442 24577
Q ss_pred eecCC
Q psy12825 317 GSGTN 321 (488)
Q Consensus 317 G~gt~ 321 (488)
++|+-
T Consensus 162 AsGsp 166 (298)
T d1gq2a1 162 ASGSP 166 (298)
T ss_dssp EESSC
T ss_pred eecCC
Confidence 77643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.37 E-value=2.1 Score=35.70 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=35.6
Q ss_pred CCCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHh
Q psy12825 173 IESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQ 223 (488)
Q Consensus 173 ~~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~ 223 (488)
+..+..+|.|+|+|.+|...++.+...+. ..|+..|.++++++ .+.++-
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~-~ak~lG 73 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFA-RAKEFG 73 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHH-HHHHHT
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHH-HHHHhC
Confidence 34456789999999998876666655553 37888899998876 455554
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=82.34 E-value=0.41 Score=41.67 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.6
Q ss_pred CCcEEEEecchhHHHHHHHHHhhhh
Q psy12825 130 DQKITVVGAGQVGMACTYSILTQTM 154 (488)
Q Consensus 130 ~~ki~vvg~g~vg~~~a~~~~~k~l 154 (488)
..||+|||+|..|+++|+.+-.++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~ 67 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGH 67 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC
T ss_pred CcEEEEECccHHHHHHHHHHHhhcc
Confidence 3699999999999999998876663
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.33 E-value=1.1 Score=37.31 Aligned_cols=41 Identities=17% Similarity=0.409 Sum_probs=32.6
Q ss_pred CCCCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHH
Q psy12825 174 ESPDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCK 216 (488)
Q Consensus 174 ~~~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~ 216 (488)
..+..+|.|+|+|++|...+..+...+. +++..|.++++++
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~ 65 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGL--NVVAVDIGDEKLE 65 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCC--eEeccCCCHHHhh
Confidence 3456799999999999876666666565 8999999998876
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.87 E-value=0.6 Score=42.04 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=35.0
Q ss_pred CCCceEEEEec-ccchHHHHHHHHHcCCCCeEEEEeCChhHHHH
Q psy12825 175 SPDQKITVVGA-GQVGMACTYSILTQGIYSNFCLIDSNEDRCKG 217 (488)
Q Consensus 175 ~~~~KIaIIGA-G~vG~~ia~~La~~~l~~el~L~Di~~e~l~g 217 (488)
|+++.|.|+|| +.+|..++..|+..|....|++.++++++++.
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~ 44 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE 44 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence 45677888899 88999999999998854478888999887754
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=81.83 E-value=0.44 Score=43.43 Aligned_cols=32 Identities=28% Similarity=0.647 Sum_probs=28.3
Q ss_pred eEEEEecccchHHHHHHHHHc-CCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILTQ-GIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~-~l~~el~L~Di~~ 212 (488)
-|+|||||..|...|..|+.. |+ +++++|..+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~--~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNV--QVAIIEQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCC--eEEEEecCC
Confidence 599999999999999999874 77 899999865
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=81.69 E-value=0.33 Score=42.09 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=27.1
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChh
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNED 213 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e 213 (488)
.+||+|.|.|.+|..++..+...+-..-+.+-|++++
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~ 38 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPD 38 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCS
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCCh
Confidence 3699999999999998888876653333445576554
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=81.58 E-value=1.1 Score=40.11 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=82.1
Q ss_pred CCCceEEEEec-c--cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc---------
Q psy12825 175 SPDQKITVVGA-G--QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G--~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~--------- 240 (488)
.+.++|.|+|| | .+|.++|..|+..|. +|++.|++++..+ .+.++..... ....... .+.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 76 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKG-RVEEFAAQLG---SDIVLQCDVAEDASIDTMFAE 76 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHH-HHHHHHHHTT---CCCEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHH-HHHHHHhhcC---CcceeecccchHHHHHHHHHH
Confidence 45678888898 4 478999999999997 8999999876544 3344433211 1111111 111
Q ss_pred --cccCCCcEEEEecccccC---CCcc----hHh----hHhhhHHHHHHHHHHHhcc-CCCcEEEEEeCCch------hH
Q psy12825 241 --AMSEGSRIVIITAGVRSL---VGET----RLQ----LVDRNVKIFKDLIPKIAKG-SPDCILLIISNPVD------VL 300 (488)
Q Consensus 241 --eal~dADiVIitag~~~k---~G~~----r~d----ll~~N~~ii~ei~~~I~~~-~p~a~vIv~TNPvd------i~ 300 (488)
+.+...|++|..++.... +... ..+ .+.-|......+.+.+..+ .+...++++|-... ..
T Consensus 77 ~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~~~ 156 (258)
T d1qsga_ 77 LGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYN 156 (258)
T ss_dssp HHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTT
T ss_pred hhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCCcH
Confidence 245567888888754321 1111 111 1233334445555555444 34555666664331 22
Q ss_pred HHHHHHhcCCCCCcEEeecCChHHHHHHHHHHHHhCCCCCCceeEEEe
Q psy12825 301 TYISWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVHGFIIG 348 (488)
Q Consensus 301 t~~~~k~sg~p~~rViG~gt~lds~R~~~~lA~~Lgv~p~~V~~~V~G 348 (488)
+|.+.|. -...+-+.+|+.++ +..|++-.+-
T Consensus 157 ~Y~~sKa---------------al~~ltr~lA~el~--~~gIrVN~I~ 187 (258)
T d1qsga_ 157 VMGLAKA---------------SLEANVRYMANAMG--PEGVRVNAIS 187 (258)
T ss_dssp HHHHHHH---------------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred HHHHHHH---------------HHHHHHHHHHHHhC--ccCceeeccc
Confidence 2333332 12346778888885 5667765443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=81.44 E-value=0.39 Score=39.90 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.8
Q ss_pred CcEEEEecchhHHHHHHHHHhhh
Q psy12825 131 QKITVVGAGQVGMACTYSILTQT 153 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~ 153 (488)
.||+|+|+|.+|.++|..+...+
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G 23 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQG 23 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCC
Confidence 49999999999999998887554
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=81.41 E-value=0.38 Score=43.99 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=24.9
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
.+|.|||+|-+|.++||.|.-++.. +++++|
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~-~V~liE 32 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWN-NITVLD 32 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCC-cEEEEe
Confidence 4899999999999999998877654 355554
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=81.33 E-value=0.4 Score=40.74 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCceEEEEecccchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEcCCc-c------ccCCCcE
Q psy12825 176 PDQKITVVGAGQVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESGSDI-A------MSEGSRI 248 (488)
Q Consensus 176 ~~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-e------al~dADi 248 (488)
+...|.|+|+|.+|...++.+...+. ..++..|.++++++. +.++.. ..-+....|. + .-.+.|+
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~-~~~~ga------~~~i~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKL-AERLGA------DHVVDARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHH-HHHTTC------SEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHH-Hhhccc------ceeecCcccHHHHHHHhhCCCCceE
Confidence 45689999999999876666655553 378889999987763 333321 1112222221 1 2246999
Q ss_pred EEEecccccCCCcchHhhHhhhHHHHHHHHHHHhccCCCcEEEEEeCC
Q psy12825 249 VIITAGVRSLVGETRLQLVDRNVKIFKDLIPKIAKGSPDCILLIISNP 296 (488)
Q Consensus 249 VIitag~~~k~G~~r~dll~~N~~ii~ei~~~I~~~~p~a~vIv~TNP 296 (488)
||.++|.+ ..+. ..+.-..|.+.+++++.+
T Consensus 104 vid~~g~~---------------~~~~---~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 104 AMDFVGSQ---------------ATVD---YTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp EEESSCCH---------------HHHH---HGGGGEEEEEEEEECCCS
T ss_pred EEEecCcc---------------hHHH---HHHHHHhCCCEEEEEeCc
Confidence 99997522 1111 223334577888887654
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=81.29 E-value=0.52 Score=40.89 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.5
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCC
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSN 211 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~ 211 (488)
-|+|||+|+.|...|..++..|. ++.|+|.+
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~--kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQ--KCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTC--CEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC--EEEEEecc
Confidence 38999999999999999988887 89999974
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=81.19 E-value=2.5 Score=35.27 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=44.1
Q ss_pred CCceEEEEe-c-ccchHHHHHHHHHcCCCCeEEEEeCC-----hhHHHHHHHHHhhcCCCCCCCcEEEcCCc-cccCCCc
Q psy12825 176 PDQKITVVG-A-GQVGMACTYSILTQGIYSNFCLIDSN-----EDRCKGEMLDLQHGAPFLRSPKIESGSDI-AMSEGSR 247 (488)
Q Consensus 176 ~~~KIaIIG-A-G~vG~~ia~~La~~~l~~el~L~Di~-----~e~l~g~~~dL~~~~~~~~~~~v~~ttd~-eal~dAD 247 (488)
+..||++|| + ..|-.+++..+..-|. +++++-.. ++... ...+.... ...++..+.|+ +++++||
T Consensus 2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~-~~~~~~~~----~~~~i~~~~d~~~ai~~aD 74 (161)
T d1vlva2 2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFK-RCQEIVKE----TDGSVSFTSNLEEALAGAD 74 (161)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHH-HHHHHHHH----HCCEEEEESCHHHHHTTCS
T ss_pred CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHH-HHHHHHhh----cCCceEEEecHHHhhhhhh
Confidence 468999999 4 4455555555544465 88888652 22222 12222211 23577888887 6899999
Q ss_pred EEEEec
Q psy12825 248 IVIITA 253 (488)
Q Consensus 248 iVIita 253 (488)
+|....
T Consensus 75 viyt~~ 80 (161)
T d1vlva2 75 VVYTDV 80 (161)
T ss_dssp EEEECC
T ss_pred heeccc
Confidence 999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=81.12 E-value=0.4 Score=40.52 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.7
Q ss_pred CcEEEEecchhHHHHHHHHHhhhhHHHHHHHH
Q psy12825 131 QKITVVGAGQVGMACTYSILTQTMARDAVSTV 162 (488)
Q Consensus 131 ~ki~vvg~g~vg~~~a~~~~~k~la~eivlid 162 (488)
+||+|||+|.+|.++|..+..++. ++.++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~ 31 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ--SVLAWD 31 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC--EEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHCCC--EEEEEE
Confidence 599999999999999988887764 344443
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.07 E-value=0.48 Score=45.78 Aligned_cols=31 Identities=23% Similarity=0.664 Sum_probs=27.6
Q ss_pred eEEEEecccchHHHHHHHHH------cCCCCeEEEEeCC
Q psy12825 179 KITVVGAGQVGMACTYSILT------QGIYSNFCLIDSN 211 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~------~~l~~el~L~Di~ 211 (488)
=|+|||||+.|.+.|..|++ +|+ +|+|+|..
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~ 70 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL--RVCLVEKA 70 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCC--CEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCC--EEEEEcCC
Confidence 59999999999999999987 576 89999974
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.85 E-value=0.46 Score=40.89 Aligned_cols=32 Identities=13% Similarity=0.308 Sum_probs=27.8
Q ss_pred CceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 177 DQKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 177 ~~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
..+|+|||+|..|...|..++..++ +++++|.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~--~v~vie~ 36 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAEL--KPLLFEG 36 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC--CCEEECC
T ss_pred cceEEEECCCHHHHHHHHHHHHcCC--cEEEEEe
Confidence 4689999999999999999998887 7788874
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=80.63 E-value=0.55 Score=40.63 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=28.3
Q ss_pred eEEEEecccchHHHHHHHHHcCCCCeEEEEeCCh
Q psy12825 179 KITVVGAGQVGMACTYSILTQGIYSNFCLIDSNE 212 (488)
Q Consensus 179 KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di~~ 212 (488)
=|+|||+|+.|...|..++..+. +++++|..+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~--kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGF--KTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCC--cEEEEEecC
Confidence 48999999999999999999887 899999753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.15 E-value=0.53 Score=39.03 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.0
Q ss_pred ceEEEEecccchHHHHHHHHHcCCCCeEEEEeC
Q psy12825 178 QKITVVGAGQVGMACTYSILTQGIYSNFCLIDS 210 (488)
Q Consensus 178 ~KIaIIGAG~vG~~ia~~La~~~l~~el~L~Di 210 (488)
.||+|||+|.+|..+|..|.. +. +|.+++.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~--~Vtvv~~ 30 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TY--EVTVIDK 30 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TS--EEEEECS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CC--CEEEEec
Confidence 389999999999999988753 33 8999986
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.02 E-value=1.7 Score=38.95 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=65.0
Q ss_pred CCCceEEEEec-c--cchHHHHHHHHHcCCCCeEEEEeCChhHHHHHHHHHhhcCCCCCCCcEEEc--CCc---------
Q psy12825 175 SPDQKITVVGA-G--QVGMACTYSILTQGIYSNFCLIDSNEDRCKGEMLDLQHGAPFLRSPKIESG--SDI--------- 240 (488)
Q Consensus 175 ~~~~KIaIIGA-G--~vG~~ia~~La~~~l~~el~L~Di~~e~l~g~~~dL~~~~~~~~~~~v~~t--td~--------- 240 (488)
.+.+++.|.|| | .+|..++..|+..|. +|++.|++++..+. ..++..... ....... +|.
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~-~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~ 79 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPE-AEKLAEALG---GALLFRADVTQDEELDALFAG 79 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHH-HHHHHHHTT---CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHH-HHHhhhccC---cccccccccCCHHHHHHHHHH
Confidence 45678888898 4 599999999999997 89999998765443 333333211 1111111 121
Q ss_pred --cccCCCcEEEEecccccC---CC----cchHh---hHhhhHHHHHHHHHHHhcc-CCCcEEEEEeC
Q psy12825 241 --AMSEGSRIVIITAGVRSL---VG----ETRLQ---LVDRNVKIFKDLIPKIAKG-SPDCILLIISN 295 (488)
Q Consensus 241 --eal~dADiVIitag~~~k---~G----~~r~d---ll~~N~~ii~ei~~~I~~~-~p~a~vIv~TN 295 (488)
+.+..-|++|..++.... .+ .+..+ .+.-|+.-...+++....+ ...+.||+++-
T Consensus 80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS 147 (256)
T d1ulua_ 80 VKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (256)
T ss_dssp HHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred HHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEee
Confidence 235578999998875321 11 12222 2344444334444443332 23566777763
|