Psyllid ID: psy12847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MERTKETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVSEKIQVHSLF
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccEEEEEEEccccEEEEEEccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHccccccEEEccccEEccccccccccccHHHHHHHHHHHHcHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccccEEEEEccccccEEEEEEEccccHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHcccccccccEcccccHHHHHHHHHHccccccccEEHHHHHHHccccccHHHHHHHHHcccEEccEcHHHEEccccccccccccHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MERTKETCLVAlnesscigTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIvnpkqncldikfkiegtdFQKLVWSElckipfgslcsYADVARNIGRPKSARAVANAcgqnnipilipchrvirsdgsyggyssgKYIKETLIKIEQKIVSEKIQVHSLF
Flexible Loop (DISEMBL)
mertketclvalnesscigTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACgqnnipilipcHRVIRSDGSYGGYSSGKYIKETLIKIEQKIvsekiqvhslf
Low Complexity Region (SEG)
MERTKETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRsdgsyggyssgKYIKETLIKIEQKIVSEKIQVHSLF
Disordered region (IsUnstruct)
******TCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVSEK*******
Disordered Region (DISOPRED)
******T***ALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQK*******VHSLF
Disordered Region (DISEMBL)
MERTKETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVSEKIQVHSLF
Disordered Region (DISPRO)
****KETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKI***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERTKETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVSEKIQVHSLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q46EW4	158	Methylated-DNA--protein-c	yes	N/A	0.792	0.943	0.428	8e-24
Q8TI34	156	Methylated-DNA--protein-c	yes	N/A	0.75	0.903	0.406	1e-22
Q8PY44	158	Methylated-DNA--protein-c	yes	N/A	0.569	0.677	0.453	5e-21
P26189	353	Regulatory protein ada OS	yes	N/A	0.712	0.379	0.370	7e-21
P06134	354	Bifunctional transcriptio	N/A	N/A	0.808	0.429	0.349	6e-20
P0A696	165	Methylated-DNA--protein-c	yes	N/A	0.553	0.630	0.419	5e-19
P0A697	165	Methylated-DNA--protein-c	yes	N/A	0.553	0.630	0.419	5e-19
P19220	179	Methylated-DNA--protein-c	yes	N/A	0.606	0.636	0.391	8e-19
Q9ZET8	165	Methylated-DNA--protein-c	N/A	N/A	0.558	0.636	0.405	2e-18
Q5UNU9	149	Probable methylated-DNA--	N/A	N/A	0.664	0.838	0.377	2e-18

>sp|Q46EW4|OGT_METBF Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=ogt PE=3 SV=1

 Score =  110 bits (274), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 5/154 (3%)

Query: 26  YYD--KSCIIQAIMFGANPEYLYVDLTKLYSHIEY-IKMFESKQS-RDIIDRLEAYIVNP 81
           YYD  +S I   ++ G      ++D  K    IE      E+K+  R+   +LEAY    
Sbjct: 2   YYDIIESPIGPILLAGNEKGLKHLDFLKGKKRIEIPADWIENKKFFREAARQLEAYFSG- 60

Query: 82  KQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNI 141
           K    D+K   EGTDFQK VW  LC+IP+G   +Y ++A +IG+P++ RAV  A  +N I
Sbjct: 61  KLESFDLKLAPEGTDFQKSVWKALCEIPYGETRTYKEIAVSIGKPRAYRAVGLANNRNPI 120

Query: 142 PILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQ 175
            I+IPCHRVI SDG   GY+SG  IKE L+K+E+
Sbjct: 121 AIIIPCHRVIGSDGKLTGYASGLDIKEFLLKLEE 154

Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 3

>sp|Q8TI34|OGT_METAC Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=ogt PE=3 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 4/145 (2%)

Query: 33  IQAIMFGANPEYL-YVDLTKLYSHIEYIKMFESKQS--RDIIDRLEAYIVNPKQNCLDIK 89
           I  I+   + E L YV+  K    IE    +   +   R+   +LEAY    +    D+K
Sbjct: 10  IGPILLAGDEEGLKYVNFMKGKKKIEVPDSWVENEEFFREASRQLEAYFAG-ELKSFDVK 68

Query: 90  FKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHR 149
              EGT+FQK VW+ L +IP+G   +Y ++A+NIG PK++RAV  A  +N I I++PCHR
Sbjct: 69  LAPEGTEFQKSVWNALKEIPYGETRTYGEIAKNIGNPKASRAVGLANNRNPIAIIVPCHR 128

Query: 150 VIRSDGSYGGYSSGKYIKETLIKIE 174
           VI ++G   GY+SG  IKE L+K+E
Sbjct: 129 VIGANGKLTGYASGLDIKEFLLKLE 153

Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q8PY44|OGT_METMA Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=ogt PE=3 SV=1

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 71/108 (65%), Gaps = 1/108 (0%)

Query: 68  RDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPK 127
           R++ ++LEAY    K    D+K   +GT+FQK VW  LC+IP G   +Y ++A+ I  PK
Sbjct: 48  REVSNQLEAYFSG-KLKTFDVKLAPQGTEFQKSVWKALCEIPCGETRTYGEIAKRIQNPK 106

Query: 128 SARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQ 175
           + RAV  A  +N I I++PCHRVI ++G   GY+SG  IKE L+K+E+
Sbjct: 107 AYRAVGLANNRNPIAIIVPCHRVIGANGKLTGYASGLDIKEFLLKLEE 154

Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|P26189|ADA_SALTY Regulatory protein ada OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ada PE=3 SV=2

 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 9/143 (6%)

Query: 35  AIMFGANPEYLYVDLTKLYS---HIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFK 91
           AI+ G + + L  +L  L+    H     +F+ +  R ++       +N +   L +   
Sbjct: 212 AILPGDSDDALLAELHTLFPSARHEPADALFQQR-VRQVV-----AAINTRDVLLSLPLD 265

Query: 92  IEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVI 151
           I+GT FQ+ VW  LC IP G   SY  +A  IG+P + RAVA+ACG N + ++IPCHRV+
Sbjct: 266 IQGTAFQQQVWQALCAIPCGETVSYQQLAATIGKPTAVRAVASACGANKLAMVIPCHRVV 325

Query: 152 RSDGSYGGYSSGKYIKETLIKIE 174
           R DG+  GY  G   K  L+K E
Sbjct: 326 RRDGALSGYRWGVRRKAQLLKRE 348

The methylated ADA protein acts as a positive regulator of its own synthesis, as well as that of other proteins. The transcription-activating function of the ADA protein resides in its N-terminus. It activates the transcription of alkA, alkB and aidB.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|P06134|ADA_ECOLI Bifunctional transcriptional activator/DNA repair enzyme Ada OS=Escherichia coli (strain K12) GN=ada PE=1 SV=2

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 15  SSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIK---MFESKQSRDII 71
           + C   + L+A  ++   I AI+ G +   L  +L +++   +      MF+ +  R++I
Sbjct: 194 ADCELGRCLVAESERG--ICAILLGDDDATLISELQQMFPAADNAPADLMFQ-QHVREVI 250

Query: 72  DRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARA 131
             L     N +   L +   I GT FQ+ VW  L  IP G   SY  +A  IG+PK+ RA
Sbjct: 251 ASL-----NQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRA 305

Query: 132 VANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE 174
           VA+AC  N + I+IPCHRV+R DG+  GY  G   K  L++ E
Sbjct: 306 VASACAANKLAIIIPCHRVVRGDGTLSGYRWGVSRKAQLLRRE 348

The methylation of Ada by methylphosphotriesters in DNA leads to its activation as a transcriptional regulator that activates the transcription of its own gene, ada, and other alkylation resistance genes, alkA, alkB and aidB.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|P0A696|OGT_MYCTU Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium tuberculosis GN=ogt PE=3 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 1/105 (0%)

Query: 71  IDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSAR 130
           +D+L AY    +    D++  + GTDFQ+ VW  L  IP+G   SY ++A  IG P +AR
Sbjct: 51  VDQLNAYFAG-ELTEFDVELDLRGTDFQQRVWKALLTIPYGETRSYGEIADQIGAPGAAR 109

Query: 131 AVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQ 175
           AV  A G N I I++PCHRVI + G   GY  G   K  L+++E+
Sbjct: 110 AVGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEK 154

Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|P0A697|OGT_MYCBO Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ogt PE=3 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 1/105 (0%)

Query: 71  IDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSAR 130
           +D+L AY    +    D++  + GTDFQ+ VW  L  IP+G   SY ++A  IG P +AR
Sbjct: 51  VDQLNAYFAG-ELTEFDVELDLRGTDFQQRVWKALLTIPYGETRSYGEIADQIGAPGAAR 109

Query: 131 AVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQ 175
           AV  A G N I I++PCHRVI + G   GY  G   K  L+++E+
Sbjct: 110 AVGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEK 154

Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|P19220|ADAB_BACSU Methylated-DNA--protein-cysteine methyltransferase, inducible OS=Bacillus subtilis (strain 168) GN=adaB PE=1 SV=1

 Score = 93.6 bits (231), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 6/120 (5%)

Query: 72  DRLEAYIVN------PKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGR 125
           D+LE Y V        K+    +  +  GT FQ  VW+ LC+IP+G   SY+D+A +I +
Sbjct: 60  DKLEPYAVEITQYLEGKRKNFTVPVEYAGTQFQLAVWNALCEIPYGQTKSYSDIANDINK 119

Query: 126 PKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVSEKIQVH 185
           P + RAV  A G N + I +PCHRVI  +GS  GY  G  +K  L+ +E++  SE    H
Sbjct: 120 PAAVRAVGAAIGANPVLITVPCHRVIGKNGSLTGYRGGFEMKTLLLDLEKRASSEMDVPH 179

Is involved in the adaptive response to alkylation damage in DNA caused by alkylating agents. Repairs O6-methylguanine residues in alkylated DNA by a direct and irreversible transfer of the methyl group from the base to one of its own cysteine residues.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q9ZET8|OGT_MYCPA Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=ogt PE=3 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 1/106 (0%)

Query: 71  IDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSAR 130
           +++L AY    +    DI+  + G++FQ+ VW  L  IP+G   SY ++A  IG P +AR
Sbjct: 51  VEQLGAYFAG-ELTEFDIELDLRGSEFQRRVWRALQTIPYGETRSYGEIAEQIGAPGAAR 109

Query: 131 AVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQK 176
           AV  A G N I I++PCHRVI + G   GY  G   K+TL+ +E++
Sbjct: 110 AVGLANGHNPIAIVVPCHRVIGASGKLTGYGGGLDRKQTLLALERR 155

Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.

Mycobacterium paratuberculosis (taxid: 1770)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

>sp|Q5UNU9|MGMT_MIMIV Probable methylated-DNA--protein-cysteine methyltransferase OS=Acanthamoeba polyphaga mimivirus GN=MGMT PE=3 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 2/127 (1%)

Query: 50  TKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIP 109
           TK+ S + +I   + K  ++ +  L  Y         ++  +++GT FQ+ VW ++ +IP
Sbjct: 22  TKIIS-VMFIDSSKIKPVKNSLSGLHKYFKGQNDYFTNLDLELKGTPFQRKVWKQILEIP 80

Query: 110 FGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKET 169
           FG   +Y+D+A  IG PK+ RAVANACG N I I++PCHRV+  +   GGY  G   K  
Sbjct: 81  FGETRTYSDIAMAIGNPKAVRAVANACGANPIAIIVPCHRVVGKNND-GGYEYGLEKKLW 139

Query: 170 LIKIEQK 176
           L+  E+K
Sbjct: 140 LLDFEKK 146

Acanthamoeba polyphaga (taxid: 5757)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
167627336	184	methylated-DNA--(protein)-cysteine S-met	0.707	0.722	0.448	3e-24
89255707	190	methylated-DNA--protein-cysteine methylt	0.941	0.931	0.364	3e-24
312134355	153	methylated-DNA/protein-cysteine methyltr	0.569	0.699	0.462	3e-24
54113435	190	NT02FT1910 [synthetic construct]	0.941	0.931	0.359	5e-24
56708554	190	methylated-DNA--protein-cysteine methylt	0.941	0.931	0.359	9e-24
182679081	366	AraC family transcriptional regulator [B	0.819	0.420	0.378	1e-23
254460497	206	methylated-DNA--protein-cysteine methylt	0.680	0.621	0.426	2e-23
398868714	355	O-6-methylguanine DNA methyltransferase	0.744	0.394	0.405	2e-23
254876436	184	methylated DNA-protein cysteine methyltr	0.569	0.581	0.486	2e-23
337754727	184	methylated-DNA--protein-cysteine methylt	0.712	0.728	0.424	3e-23

>gi|167627336|ref|YP_001677836.1| methylated-DNA--(protein)-cysteine S-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597337|gb|ABZ87335.1| Methylated-DNA--(protein)-cysteine S-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 14/147 (9%)

Query: 40  ANPEYLYV-----DLTKLYSHIEYIKMFESK---QSRDIIDR----LEAYIVNPKQNCLD 87
           A+  YLY      DL  +YS  + +K++ +K   ++ DII++    L+ Y  N +     
Sbjct: 38  ADDNYLYACFFISDLN-IYSIEKLLKIYNAKILFKTNDIINQTRNQLDKYF-NKELKTFS 95

Query: 88  IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPC 147
           I  ++ GTDFQK VW EL KIP+G   SY   A NIG+P + RAVANA G+N +PI+IPC
Sbjct: 96  IPLQLTGTDFQKQVWHELIKIPYGETISYRKEATNIGKPTAFRAVANANGKNLLPIIIPC 155

Query: 148 HRVIRSDGSYGGYSSGKYIKETLIKIE 174
           HRVI S+G  GGY+ G Y KE L+ +E
Sbjct: 156 HRVINSNGKLGGYTGGLYKKEFLLNLE 182

Source: Francisella philomiragia subsp. philomiragia ATCC 25017

Species: Francisella philomiragia

Genus: Francisella

Family: Francisellaceae

Order: Thiotrichales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|89255707|ref|YP_513068.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115314202|ref|YP_762925.1| methylated-DNA--[protein]-cysteine S-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|156501660|ref|YP_001427725.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367084|ref|ZP_04983118.1| methylated-DNA-protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica 257] gi|254368985|ref|ZP_04984998.1| methylated-DNA-protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|290953444|ref|ZP_06558065.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica URFT1] gi|422938199|ref|YP_007011346.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica FSC200] gi|423050017|ref|YP_007008451.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica F92] gi|89143538|emb|CAJ78716.1| Methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|115129101|gb|ABI82288.1| methylated-DNA--[protein]-cysteine S-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134252908|gb|EBA52002.1| methylated-DNA-protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica 257] gi|156252263|gb|ABU60769.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121906|gb|EDO66076.1| methylated-DNA-protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica FSC022] gi|407293350|gb|AFT92256.1| methylated-DNA--protein-cysteinemethyltransferas e [Francisella tularensis subsp. holarctica FSC200] gi|421950739|gb|AFX69988.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. holarctica F92]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 1   MERTKETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLY----VDLTKLYSHI 56
           ++ T +  L A+N+ S    K +    +    I  ++  A+ +YLY    +  + +YS  
Sbjct: 2   LKETHQIYLAAINKKSY---KTVFYAQEIQTPIGNLIAVADDDYLYACFFISDSNIYSIE 58

Query: 57  EYIKMFESKQS-------RDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIP 109
           + +K++ +K S           D+L  Y    +     +  ++ GTDFQK VW EL KIP
Sbjct: 59  KLLKIYNAKISFNADNITNQTKDQLNKYF-KRELKSFSVPLRLTGTDFQKQVWRELIKIP 117

Query: 110 FGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKET 169
           +G   SY   A NIG+P + RAVANA G+N +PI+IPCHRVI ++G  GGY+SG Y KE 
Sbjct: 118 YGETISYRKEATNIGKPTAFRAVANANGKNLLPIIIPCHRVINTNGKLGGYTSGLYKKEF 177

Query: 170 LIKIEQKIVSEK 181
           L+ +E  I+  K
Sbjct: 178 LLNLEHSILIHK 189

Source: Francisella tularensis subsp. holarctica LVS

Species: Francisella tularensis

Genus: Francisella

Family: Francisellaceae

Order: Thiotrichales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|312134355|ref|YP_004001693.1| methylated-DNA/protein-cysteine methyltransferase [Caldicellulosiruptor owensensis OL] gi|311774406|gb|ADQ03893.1| methylated-DNA/protein-cysteine methyltransferase [Caldicellulosiruptor owensensis OL]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 80/108 (74%), Gaps = 1/108 (0%)

Query: 68  RDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPK 127
           ++ I +LE Y    K+   ++K +++GT+FQK VW+EL K+PFGS+ SY ++A+ +G+P+
Sbjct: 44  KEAILQLEEYF-EGKRTTFELKLQLQGTEFQKRVWNELIKVPFGSVISYRELAKKVGKPQ 102

Query: 128 SARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQ 175
            ARAV NA G+N   I++PCHRV++SDG+ GGYS+G + K  L++ E+
Sbjct: 103 GARAVGNAVGKNPAVIIVPCHRVVKSDGTLGGYSAGIHKKMWLLEHEK 150

Source: Caldicellulosiruptor owensensis OL

Species: Caldicellulosiruptor owensensis

Genus: Caldicellulosiruptor

Family: Thermoanaerobacterales Family III. Incertae Sedis

Order: Thermoanaerobacterales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|54113435|gb|AAV29351.1| NT02FT1910 [synthetic construct]

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 15/192 (7%)

Query: 1   MERTKETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLY----VDLTKLYSHI 56
           ++ T +  L A+N+ S    K +    +    I  ++  A+ +YLY    +  + +YS  
Sbjct: 2   LKETHQIYLAAINKKSY---KTVFYAQEIQTPIGNLIAVADDDYLYACFFISDSNIYSIE 58

Query: 57  EYIKMFESKQS-------RDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIP 109
           + +K++ +K S           D+L  Y    +     +  ++ GTDFQK VW EL KIP
Sbjct: 59  KLLKIYNAKISFNADNITNQTKDQLNKYF-KRELKSFSVPLRLTGTDFQKQVWRELIKIP 117

Query: 110 FGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKET 169
           +G   SY   A NIG+P + RAVANA G+N +PI+IPCHRVI ++G  GGY+ G Y KE 
Sbjct: 118 YGETISYRKEATNIGKPTAFRAVANANGKNLLPIIIPCHRVINTNGKLGGYTGGLYKKEF 177

Query: 170 LIKIEQKIVSEK 181
           L+ +E  I+  K
Sbjct: 178 LLNLEHSILKHK 189

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|56708554|ref|YP_170450.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110671025|ref|YP_667582.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|134301800|ref|YP_001121768.1| methylated-DNA--protein-cysteine methyltransferase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|187931212|ref|YP_001891196.1| methylated DNA protein cysteine methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|254371182|ref|ZP_04987184.1| methylated-DNA-protein-cysteinemethyltransferas e [Francisella tularensis subsp. tularensis FSC033] gi|254875407|ref|ZP_05248117.1| methylated-DNA-protein-cysteine methyltransferase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|379717785|ref|YP_005306121.1| Methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis TIGB03] gi|379726388|ref|YP_005318574.1| Methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis TI0902] gi|385795240|ref|YP_005831646.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis NE061598] gi|421751590|ref|ZP_16188630.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis AS_713] gi|421753445|ref|ZP_16190437.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 831] gi|421756177|ref|ZP_16193103.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 80700075] gi|421757170|ref|ZP_16194053.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 80700103] gi|421759029|ref|ZP_16195864.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 70102010] gi|424674346|ref|ZP_18111266.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 70001275] gi|56605046|emb|CAG46151.1| Methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321358|emb|CAL09534.1| Methylated-DNA--protein-cysteinemethyltransferas e [Francisella tularensis subsp. tularensis FSC198] gi|134049577|gb|ABO46648.1| methylated-DNA--protein-cysteine methyltransferase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|151569422|gb|EDN35076.1| methylated-DNA-protein-cysteinemethyltransferas e [Francisella tularensis subsp. tularensis FSC033] gi|187712121|gb|ACD30418.1| methylated DNA protein cysteine methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] gi|254841406|gb|EET19842.1| methylated-DNA-protein-cysteine methyltransferase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159775|gb|ADA79166.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis NE061598] gi|377827837|gb|AFB81085.1| Methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis TI0902] gi|377829462|gb|AFB79541.1| Methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis TIGB03] gi|409085643|gb|EKM85779.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 80700075] gi|409086926|gb|EKM87037.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 831] gi|409087122|gb|EKM87229.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis AS_713] gi|409091290|gb|EKM91291.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 70102010] gi|409092817|gb|EKM92783.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 80700103] gi|417435020|gb|EKT89948.1| methylated-DNA--protein-cysteine methyltransferase [Francisella tularensis subsp. tularensis 70001275]

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 15/192 (7%)

Query: 1   MERTKETCLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLY----VDLTKLYSHI 56
           ++ T +  L A+N+ S    K +    +    I  ++  A+ +YLY    +  + +YS  
Sbjct: 2   LKETHQIYLAAINKKSY---KTVFYAQEIQTPIGNLIAVADDDYLYACFFISDSNIYSIE 58

Query: 57  EYIKMFESKQS-------RDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIP 109
           + +K++ +K S           D+L  Y    +     +  ++ GTDFQK VW EL KIP
Sbjct: 59  KLLKIYNAKISFNADNITNQTKDQLNKYF-KRELKSFSVPLRLTGTDFQKQVWRELIKIP 117

Query: 110 FGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKET 169
           +G   SY   A NIG+P + RAVANA G+N +PI+IPCHRVI ++G  GGY+ G Y KE 
Sbjct: 118 YGETISYRKEATNIGKPTAFRAVANANGKNLLPIIIPCHRVINTNGKLGGYTGGLYKKEF 177

Query: 170 LIKIEQKIVSEK 181
           L+ +E  I+  K
Sbjct: 178 LLNLEHSILIHK 189

Source: Francisella tularensis subsp. tularensis SCHU S4

Species: Francisella tularensis

Genus: Francisella

Family: Francisellaceae

Order: Thiotrichales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|182679081|ref|YP_001833227.1| AraC family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182634964|gb|ACB95738.1| transcriptional regulator, AraC family [Beijerinckia indica subsp. indica ATCC 9039]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%)

Query: 11  ALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDI 70
           AL E+S +G+ ++       C   AI  G +PE L  +L   +     I   E  ++  +
Sbjct: 203 ALGETS-LGSLLVACSAQGVC---AIFLGDDPEALVHELQGRFPKAHLIGGDEGFEA--L 256

Query: 71  IDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSAR 130
           + ++  ++  P +  LD+   I GT FQ  VW  LC++PFG   SY D+AR IG PK+ R
Sbjct: 257 VAKVVGFVETPARG-LDLPLDIRGTAFQHKVWQALCEVPFGETASYTDIARRIGAPKAVR 315

Query: 131 AVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLI 171
           AVA AC  N I + IPCHR++R+DGS  GY  G   K  L+
Sbjct: 316 AVAQACAANKIAVAIPCHRILRTDGSLSGYRWGVERKRALL 356

Source: Beijerinckia indica subsp. indica ATCC 9039

Species: Beijerinckia indica

Genus: Beijerinckia

Family: Beijerinckiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|254460497|ref|ZP_05073913.1| methylated-DNA--protein-cysteine methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206677086|gb|EDZ41573.1| methylated-DNA--protein-cysteine methyltransferase [Rhodobacteraceae bacterium HTCC2083]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 1/129 (0%)

Query: 48  DLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCK 107
           +L KL   +  I   +++ +R++ D+L AY      N   I   + GTDF K VW+ L K
Sbjct: 78  ELRKLGGALGTIATGQTQITRNLHDQLGAYFATSLSN-FSIPMVLHGTDFTKSVWTALLK 136

Query: 108 IPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIK 167
           +PFG+  SYAD++  +G P + RAVA A G N I ILIPCHRVI +DGS  GY+ G + K
Sbjct: 137 LPFGTTTSYADLSIALGNPTATRAVARANGANQIAILIPCHRVIGADGSLTGYAGGLWRK 196

Query: 168 ETLIKIEQK 176
             L+++E++
Sbjct: 197 RALLELERQ 205

Source: Rhodobacterales bacterium HTCC2083

Species: Rhodobacteraceae bacterium HTCC2083

Family: Rhodobacteraceae

Order: Rhodobacterales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398868714|ref|ZP_10624108.1| O-6-methylguanine DNA methyltransferase [Pseudomonas sp. GM78] gi|398232529|gb|EJN18488.1| O-6-methylguanine DNA methyltransferase [Pseudomonas sp. GM78]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 3/143 (2%)

Query: 35  AIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEG 94
           AI+ G +P+ L  DL   +     I   ++ +   +I R+  +I  P    LD+   + G
Sbjct: 216 AILLGDDPQQLVCDLQDKFRRATLIGADQAFEQ--LIARVVGFIEAPALG-LDLPLDVRG 272

Query: 95  TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSD 154
           T FQ+ VW  L +IP GS  SYAD+A+ IG PK+ RAVA ACG N++ + IPCHRV+RSD
Sbjct: 273 TAFQERVWQALREIPAGSTASYADIAQRIGNPKAVRAVAQACGANSLAVAIPCHRVVRSD 332

Query: 155 GSYGGYSSGKYIKETLIKIEQKI 177
           G+  GY  G   K  L++ E+ +
Sbjct: 333 GNLSGYRWGVERKRQLLEREKPL 355

Source: Pseudomonas sp. GM78

Species: Pseudomonas sp. GM78

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|254876436|ref|ZP_05249146.1| methylated DNA-protein cysteine methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842457|gb|EET20871.1| methylated DNA-protein cysteine methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 4/111 (3%)

Query: 64  SKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNI 123
           +KQ+R+ +D+      + +     I  ++ GTDFQK VW EL KIP+G   SY   A NI
Sbjct: 76  TKQTRNQLDKY----FDKELKTFSIPLRLTGTDFQKQVWHELIKIPYGETISYRKEATNI 131

Query: 124 GRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE 174
           G+P + RAVANA G+N +PI+IPCHRVI S+G  GGY+ G Y KE L+ +E
Sbjct: 132 GKPTAFRAVANANGKNVLPIIIPCHRVINSNGKLGGYTGGLYKKEFLLNLE 182

Source: Francisella philomiragia subsp. philomiragia ATCC 25015

Species: Francisella philomiragia

Genus: Francisella

Family: Francisellaceae

Order: Thiotrichales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|337754727|ref|YP_004647238.1| methylated-DNA--protein-cysteine methyltransferase [Francisella sp. TX077308] gi|336446332|gb|AEI35638.1| Methylated-DNA--protein-cysteine methyltransferase [Francisella sp. TX077308]

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 91/146 (62%), Gaps = 12/146 (8%)

Query: 40  ANPEYLY----VDLTKLYSHIEYIKMFESK---QSRDIIDR----LEAYIVNPKQNCLDI 88
           A+  YLY    ++ + +Y+  + +K + +K   ++ DII++    L+ Y+ N +     I
Sbjct: 38  ADDNYLYACFFINDSNIYAIEKLLKTYNAKISFKTNDIINQTRNQLDKYL-NKELKTFSI 96

Query: 89  KFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCH 148
             ++ GTDFQK VW EL KIP+G   SY   A NIG+P + RAVANA G+N +PI+IPCH
Sbjct: 97  PLRLTGTDFQKQVWHELIKIPYGETISYRKEATNIGKPTAFRAVANANGKNLLPIIIPCH 156

Query: 149 RVIRSDGSYGGYSSGKYIKETLIKIE 174
           RVI S+G  GGY+ G   KE L+ +E
Sbjct: 157 RVINSNGKLGGYTGGLDKKEFLLNLE 182

Source: Francisella sp. TX077308

Species: Francisella sp. TX077308

Genus: Francisella

Family: Francisellaceae

Order: Thiotrichales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
SGD|S000002359	188	MGT1 "DNA repair methyltransfe	0.441	0.441	0.397	1.6e-15
UNIPROTKB|P0A696	165	ogt "Methylated-DNA--protein-c	0.553	0.630	0.380	4.2e-15
UNIPROTKB|P06134	354	ada [Escherichia coli K-12 (ta	0.691	0.367	0.347	1.2e-14
UNIPROTKB|Q9KKT3	157	VC_A1017 "Methylated-DNA--prot	0.632	0.757	0.341	1.8e-14
TIGR_CMR|VC_A1017	157	VC_A1017 "methylated-DNA--prot	0.632	0.757	0.341	1.8e-14
TIGR_CMR|CJE_0923	150	CJE_0923 "methylated-DNA--prot	0.531	0.666	0.371	2.3e-14
TIGR_CMR|SO_3126	188	SO_3126 "methylated-DNA--prote	0.436	0.436	0.414	3.8e-14
TIGR_CMR|SPO_3311	357	SPO_3311 "ADA regulatory prote	0.542	0.285	0.368	7.5e-14
TIGR_CMR|DET_1460	186	DET_1460 "methylated-DNA--prot	0.537	0.543	0.392	1.6e-13
TIGR_CMR|BA_2039	150	BA_2039 "methylated-DNA--prote	0.547	0.686	0.365	2.7e-13

SGD|S000002359 MGT1 "DNA repair methyltransferase (6-O-methylguanine-DNA methylase)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 33/83 (39%), Positives = 52/83 (62%)

Query:    94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRX 153
             GTDFQ+ VW+EL  +  G + +Y D+A+ IG+P +AR+V  ACG NN+ +L+PCHR++  
Sbjct:    98 GTDFQRKVWNELLNVEHGHVVTYGDIAKRIGKPTAARSVGRACGSNNLALLVPCHRIVGS 157

Query:   154 XXXXXXXXXXKYIKETLIKIEQK 176
                         +KE L+  E++
Sbjct:   158 NRKLTGYKWSCKLKEQLLNNEKE 180

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=IEA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IMP

GO:0005634 "nucleus" evidence=IEA;IC

GO:0003677 "DNA binding" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|P0A696 ogt "Methylated-DNA--protein-cysteine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 40/105 (38%), Positives = 56/105 (53%)

Query:    71 IDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSAR 130
             +D+L AY         D++  + GTDFQ+ VW  L  IP+G   SY ++A  IG P +AR
Sbjct:    51 VDQLNAYFAGELTE-FDVELDLRGTDFQQRVWKALLTIPYGETRSYGEIADQIGAPGAAR 109

Query:   131 AVANACGQNNIPILIPCHRVIRXXXXXXXXXXXKYIKETLIKIEQ 175
             AV  A G N I I++PCHRVI               K  L+++E+
Sbjct:   110 AVGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEK 154

GO:0005886 "plasma membrane" evidence=IDA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IDA

GO:0051409 "response to nitrosative stress" evidence=IDA

UNIPROTKB|P06134 ada [Escherichia coli K-12 (taxid:83333)]

 Score = 191 (72.3 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 49/141 (34%), Positives = 75/141 (53%)

Query:    15 SSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIK---MFESKQSRDII 71
             + C   + L+A  ++   I AI+ G +   L  +L +++   +      MF+ +  R++I
Sbjct:   194 ADCELGRCLVAESERG--ICAILLGDDDATLISELQQMFPAADNAPADLMFQ-QHVREVI 250

Query:    72 DRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARA 131
               L     N +   L +   I GT FQ+ VW  L  IP G   SY  +A  IG+PK+ RA
Sbjct:   251 ASL-----NQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRA 305

Query:   132 VANACGQNNIPILIPCHRVIR 152
             VA+AC  N + I+IPCHRV+R
Sbjct:   306 VASACAANKLAIIIPCHRVVR 326

GO:0008270 "zinc ion binding" evidence=IEA;IDA

GO:0003908 "methylated-DNA-[protein

GO:0005575 "cellular_component" evidence=IDA

GO:0080111 "DNA demethylation" evidence=IDA

GO:0006307 "DNA dealkylation involved in DNA repair" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9KKT3 VC_A1017 "Methylated-DNA--protein-cysteine methyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 42/123 (34%), Positives = 64/123 (52%)

Query:    55 HI-EYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSL 113
             H+ +Y+K  E       I +L+ Y    +    ++     GT FQ+ VW  LCKIP+G +
Sbjct:    37 HLGDYVK--ECPILNKTIRQLDEYFSGQRTQ-FELPLAASGTAFQQSVWHALCKIPYGEI 93

Query:   114 CSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXXXXXXXXKYIKETLIKI 173
              SY  +A  IG PK+ RAV  A G+N I I++PCHRV+               K  L+++
Sbjct:    94 WSYQQLAEAIGNPKAVRAVGLANGKNPISIIVPCHRVVGKNGQLTGYAGGLERKAFLLEL 153

Query:   174 EQK 176
             E++
Sbjct:   154 EKR 156

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|VC_A1017 VC_A1017 "methylated-DNA--protein-cysteine S-methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 42/123 (34%), Positives = 64/123 (52%)

Query:    55 HI-EYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSL 113
             H+ +Y+K  E       I +L+ Y    +    ++     GT FQ+ VW  LCKIP+G +
Sbjct:    37 HLGDYVK--ECPILNKTIRQLDEYFSGQRTQ-FELPLAASGTAFQQSVWHALCKIPYGEI 93

Query:   114 CSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXXXXXXXXKYIKETLIKI 173
              SY  +A  IG PK+ RAV  A G+N I I++PCHRV+               K  L+++
Sbjct:    94 WSYQQLAEAIGNPKAVRAVGLANGKNPISIIVPCHRVVGKNGQLTGYAGGLERKAFLLEL 153

Query:   174 EQK 176
             E++
Sbjct:   154 EKR 156

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|CJE_0923 CJE_0923 "methylated-DNA--protein-cysteine S-methyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 39/105 (37%), Positives = 59/105 (56%)

Query:    51 KLYSHIEYIKMFESKQSRDIID----RLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELC 106
             K  + +++     S++   ++D     L+ Y  + K     I   I+GTDF+  V+  L 
Sbjct:    20 KFLTRVDFCDNKRSEKKCSLLDLAKYELDLYFTH-KLRKFSIPVLIQGTDFESKVYKALM 78

Query:   107 KIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVI 151
             +IP+G + +Y D+A  I  PK+ RAV NA  +N IPI IPCHRVI
Sbjct:    79 EIPYGKIATYKDIAEKINYPKAFRAVGNANSKNQIPIFIPCHRVI 123

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|SO_3126 SO_3126 "methylated-DNA--protein-cysteine methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 34/82 (41%), Positives = 48/82 (58%)

Query:    93 EGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIR 152
             +GT+FQ+ VW  L  + +G  CSYAD+A  I RPK+ RAV  A G N I I++PCHR+I 
Sbjct:    96 KGTEFQRQVWQALIAVDYGQCCSYADIAERIARPKAVRAVGAANGANPIAIIVPCHRIIG 155

Query:   153 XXXXXXXXXXXKYIKETLIKIE 174
                          +K+ L+ +E
Sbjct:   156 KNGQLTGYAYGLGMKQQLLMLE 177

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|SPO_3311 SPO_3311 "ADA regulatory protein, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 184 (69.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 38/103 (36%), Positives = 59/103 (57%)

Query:    73 RLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAV 132
             +L A++   +    D+   + GT F   VW  L ++P GS  SY+++AR +GRP++ RAV
Sbjct:   246 QLTAFLAGRRAR-FDLDLALHGTPFTCRVWQALQELPAGSTVSYSELARRLGRPEAVRAV 304

Query:   133 ANACGQNNIPILIPCHRVIRXXXXXXXXXXXKYIKETLIKIEQ 175
             A A G N I I+IPCHRV+             + K+ LI++E+
Sbjct:   305 ARANGANQIAIVIPCHRVLGADGALTGYGGGLWRKQRLIELER 347

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TIGR_CMR|DET_1460 DET_1460 "methylated-DNA--protein-cysteine methyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 42/107 (39%), Positives = 57/107 (53%)

Query:    73 RLEAYIVNPKQNCLDIKFKIE--G-TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSA 129
             +LE+Y    + N  D  F ++  G T F+  V+     IP+G   SY  +AR IGRPK+A
Sbjct:    79 KLESYF---QGNSTDFPFSLDLSGYTPFESQVFKTCALIPYGQTASYGQIARRIGRPKAA 135

Query:   130 RAVANACGQNNIPILIPCHRVIRXXXXXXXXXXXKYIKETLIKIEQK 176
             RAV  A  +N +PILIPCHRVI              IK  L+ +E +
Sbjct:   136 RAVGQALHKNPVPILIPCHRVIAANGKTGGFNGGTNIKCWLLTLETR 182

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|BA_2039 BA_2039 "methylated-DNA--protein-cysteine S-methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 38/104 (36%), Positives = 53/104 (50%)

Query:    71 IDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSAR 130
             I+ L+ Y    ++    +    EGT FQK VW  L  IP+G   SY D+A  +G  K+ R
Sbjct:    44 INELDEYFKGNRKE-FTVPLSPEGTAFQKNVWDALYTIPYGVSASYLDIAEKVGNTKAVR 102

Query:   131 AVANACGQNNIPILIPCHRVIRXXXXXXXXXXXKYIKETLIKIE 174
             A+  A  +N I I++PCHRVI             + KE L+K E
Sbjct:   103 AIGGANSRNPISIIVPCHRVIGKSGKLVGYAGGLWRKEWLLKHE 146

GO:0003908 "methylated-DNA-[protein

GO:0006281 "DNA repair" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19220	ADAB_BACSU	2, ., 1, ., 1, ., 6, 3	0.3916	0.6063	0.6368	yes	N/A
Q6BVY4	MGMT_DEBHA	2, ., 1, ., 1, ., 6, 3	0.3087	0.7340	0.7225	yes	N/A
Q46EW4	OGT_METBF	2, ., 1, ., 1, ., 6, 3	0.4285	0.7925	0.9430	yes	N/A
P52982	OGT_MYCLE	2, ., 1, ., 1, ., 6, 3	0.3560	0.6861	0.7818	yes	N/A
Q8TI34	OGT_METAC	2, ., 1, ., 1, ., 6, 3	0.4068	0.75	0.9038	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
3rd Layer	2.1.1.63	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
COG0350	168	COG0350, Ada, Methylated DNA-protein cysteine meth	1e-40
cd06445	79	cd06445, ATase, The DNA repair protein O6-alkylgua	2e-38
TIGR00589	80	TIGR00589, ogt, O-6-methylguanine DNA methyltransf	3e-38
pfam01035	84	pfam01035, DNA_binding_1, 6-O-methylguanine DNA me	3e-37
PRK00901	155	PRK00901, PRK00901, methylated-DNA--protein-cystei	5e-37
PRK15435	353	PRK15435, PRK15435, bifunctional DNA-binding trans	5e-29
PRK10286	171	PRK10286, PRK10286, O-6-alkylguanine-DNA:cysteine-	6e-21
COG3695	103	COG3695, COG3695, Predicted methylated DNA-protein	2e-11
PRK03887	175	PRK03887, PRK03887, methylated-DNA--protein-cystei	2e-10

>gnl|CDD|223427 COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]

 Score =  135 bits (341), Expect = 1e-40
 Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 63  ESKQSRDIIDRLEAYIVNPKQNCLD-IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVAR 121
            ++    ++  LEAY    + +    +   + GT FQ  VW  L +IP+G   +Y ++AR
Sbjct: 54  AARALGGLLRELEAYFNGKEPDFDPPLPLVLHGTGFQGRVWQALREIPYGETVTYGEIAR 113

Query: 122 NIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE 174
            +GRP + RAV NA G N +PI+IPCHRVI +DG  GGY+ G   K+ L+++E
Sbjct: 114 RLGRPTAVRAVGNANGANPLPIIIPCHRVIGADGDLGGYAGGLERKKWLLELE 166

Length = 168

>gnl|CDD|119438 cd06445, ATase, The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks

 Score =  126 bits (319), Expect = 2e-38
 Identities = 40/79 (50%), Positives = 54/79 (68%)

Query: 97  FQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGS 156
           FQ+ VW  L +IP+G + +Y  +A+  G PK+ARAV +A  +N IPILIPCHRV+RSDG 
Sbjct: 1   FQRRVWEALRQIPYGEVTTYGQIAKLAGTPKAARAVGSALARNPIPILIPCHRVVRSDGG 60

Query: 157 YGGYSSGKYIKETLIKIEQ 175
            GGY  G   K  L+++E 
Sbjct: 61  LGGYRGGLERKRELLELEG 79

ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of the C-terminal domain, suggesting an important structural role for the N-terminal domain in orienting the C-terminal domain for proper catalysis. Some ATase C-terminal domain homologs are either single-domain proteins that lack an N-terminal domain, or have a tryptophan substituted in place of the acceptor cysteine (i.e. the motif PCHR is replaced by PWHR). ATase null mutant mice are viable, fertile, and have a normal lifespan. Length = 79

>gnl|CDD|213542 TIGR00589, ogt, O-6-methylguanine DNA methyltransferase

 Score =  126 bits (318), Expect = 3e-38
 Identities = 40/80 (50%), Positives = 54/80 (67%)

Query: 95  TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSD 154
           T FQ+ VW  L  IP+G   SY  +A  IG PK+ARAV  A G+N +PIL+PCHRV+  +
Sbjct: 1   TPFQQKVWQALRTIPYGETISYGQLAARIGNPKAARAVGGANGRNPLPILVPCHRVVGKN 60

Query: 155 GSYGGYSSGKYIKETLIKIE 174
           G+ GGYS G  +K+ L++ E
Sbjct: 61  GTLGGYSGGLELKKFLLEHE 80

All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 80

>gnl|CDD|201565 pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase, DNA binding domain

 Score =  123 bits (311), Expect = 3e-37
 Identities = 38/84 (45%), Positives = 54/84 (64%)

Query: 95  TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSD 154
           T FQ+ V   L +IP+G + +Y D+A+  GRP +ARAV  A  +N IP+++PCHRV+RSD
Sbjct: 1   TPFQRRVLEALRQIPYGEVTTYGDIAKAAGRPTAARAVGRALAKNPIPLIVPCHRVVRSD 60

Query: 155 GSYGGYSSGKYIKETLIKIEQKIV 178
           G  GGY  G   K  L+++E    
Sbjct: 61  GKLGGYRGGLERKRALLELEGIEF 84

This domain is a 3 helical bundle. Length = 84

>gnl|CDD|234860 PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional

 Score =  125 bits (316), Expect = 5e-37
 Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)

Query: 49  LTKLY----SHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSE 104
           +T L        + + + E+   ++   +LE Y    K+   D+    +GT+FQK VW  
Sbjct: 23  ITHLCFGEDKIPKDVTILETDLLKEANKQLEEYFEG-KRKKFDLPLAPQGTEFQKKVWKA 81

Query: 105 LCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGK 164
           L +IP+G   SY ++A NIG PK+ RAV  A  +N IPI IPCHRVI ++G   GY+ G 
Sbjct: 82  LQEIPYGETRSYKEIAVNIGNPKACRAVGLANNKNPIPIFIPCHRVIGANGKLVGYAGGL 141

Query: 165 YIKETLIKIE 174
            IKE L+K+E
Sbjct: 142 DIKEKLLKLE 151

Length = 155

>gnl|CDD|185333 PRK15435, PRK15435, bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional

 Score =  109 bits (274), Expect = 5e-29
 Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 19/167 (11%)

Query: 8   CLVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQS 67
           CLVA +E                  I AI+ G +   L  +L +++   +      + Q 
Sbjct: 201 CLVAESERG----------------ICAILLGDDDAALISELQQMFPAADNAPADLTFQQ 244

Query: 68  RDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPK 127
              +  + A + N +   L +   I GT FQ+ VW  L  IP G   SY  +A  IG+PK
Sbjct: 245 H--VREVIASL-NQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPK 301

Query: 128 SARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE 174
           + RAVA+AC  N + I+IPCHRV+R DG+  GY  G   K  L++ E
Sbjct: 302 AVRAVASACAANKLAIVIPCHRVVRGDGALSGYRWGVSRKAQLLRRE 348

Length = 353

>gnl|CDD|182355 PRK10286, PRK10286, O-6-alkylguanine-DNA:cysteine-protein methyltransferase; Provisional

 Score = 84.5 bits (209), Expect = 6e-21
 Identities = 38/81 (46%), Positives = 50/81 (61%)

Query: 94  GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRS 153
           GT FQ+ VW  L  IP G +  Y  +A  +GRP +ARAV  A G N I I++PCHRVI  
Sbjct: 86  GTPFQREVWQTLRTIPCGQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGR 145

Query: 154 DGSYGGYSSGKYIKETLIKIE 174
           +G+  GY+ G   KE L++ E
Sbjct: 146 NGTMTGYAGGVQRKEWLLRHE 166

Length = 171

>gnl|CDD|226219 COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 23/82 (28%), Positives = 36/82 (43%)

Query: 93  EGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIR 152
              +F + V   +  IP G + +Y D+A+  G P++AR V            +P HRV+ 
Sbjct: 3   VADEFTQRVLDVVAAIPEGKVSTYGDIAKLAGLPRAARQVGRILKHLPEGSDLPWHRVVN 62

Query: 153 SDGSYGGYSSGKYIKETLIKIE 174
           SDG        K  +  L+  E
Sbjct: 63  SDGRISLPGPDKQRQRELLLAE 84

Length = 103

>gnl|CDD|167628 PRK03887, PRK03887, methylated-DNA--protein-cysteine methyltransferase; Provisional

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 15/151 (9%)

Query: 33  IQAIMFGAN-PEYLYVDLTKLYSHIE------YIKMFESKQSRDIIDRLEAYIVNPKQNC 85
           IQ I F  +  E+L   ++ L   ++       +K   S     +   L   I N +   
Sbjct: 24  IQGITFSFDGEEFLRERISNLAEFLKKRGVKVSLKERPSDYPELVFKVLIGKISNEE--- 80

Query: 86  LDIKFKIEG-TDFQKLVWSELCK-IPFGSLCSYADVARNIGRPKSARAVANACGQNNIPI 143
              +   EG T F++ V+  L K +  G + +Y ++A+ +    S RAV  A  +N  PI
Sbjct: 81  GLEELSFEGLTPFERKVYEWLTKNVKRGEVITYGELAKALN--TSPRAVGGAMKRNPYPI 138

Query: 144 LIPCHRVIRSDGSYGGYSSGKYIKETLIKIE 174
           ++PCHRV+      G Y+     K+ L+++E
Sbjct: 139 IVPCHRVVGRKNP-GLYTPKPEYKKFLLEVE 168

Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PRK00901	155	methylated-DNA--protein-cysteine methyltransferase	100.0
PRK10286	171	O-6-alkylguanine-DNA:cysteine-protein methyltransf	100.0
COG0350	168	Ada Methylated DNA-protein cysteine methyltransfer	100.0
PRK15435	353	bifunctional DNA-binding transcriptional dual regu	100.0
KOG4062|consensus	178		100.0
TIGR00589	80	ogt O-6-methylguanine DNA methyltransferase. All p	100.0
PF01035	85	DNA_binding_1: 6-O-methylguanine DNA methyltransfe	100.0
PRK03887	175	methylated-DNA--protein-cysteine methyltransferase	100.0
cd06445	79	ATase The DNA repair protein O6-alkylguanine-DNA a	99.98
COG3695	103	Predicted methylated DNA-protein cysteine methyltr	99.93
PF02870	77	Methyltransf_1N: 6-O-methylguanine DNA methyltrans	99.35
PF13936	44	HTH_38: Helix-turn-helix domain; PDB: 2W48_A.	83.69
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	83.31

>PRK00901 methylated-DNA--protein-cysteine methyltransferase; Provisional

Probab=100.00  E-value=3.6e-52  Score=332.99  Aligned_cols=151  Identities=36%  Similarity=0.622  Sum_probs=137.3

Q ss_pred             EEEEEEeccCccceEEEEEecccccc-cc-cccchhhhhhcccCChhHHHHHHHHHHHhcCCCCCCcccccccCCChhHH
Q psy12847         22 MLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQK   99 (188)
Q Consensus        22 ~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~~~~~~~~~~~~~l~~~~~qL~~YF~G~~~~~F~lpl~~~gt~f~~   99 (188)
                      ++|.+|+||  ||.+.+++++++|+. .| +.....  .....+++.+.++.+||++||+|++.+ |++|+++.||+||+
T Consensus         2 ~~~~~~~tp--~G~~~i~~~~~~l~~l~f~~~~~~~--~~~~~~~~~~~~~~~~l~~Yf~G~~~~-f~lpl~~~gt~fq~   76 (155)
T PRK00901          2 NNIYFYETP--IGKIGIAENGTAITHLCFGEDKIPK--DVTILETDLLKEANKQLEEYFEGKRKK-FDLPLAPQGTEFQK   76 (155)
T ss_pred             CeeEEEeCC--CEEEEEEEECCEEEEEEecCCcchh--hccccCcHHHHHHHHHHHHHHcCCCcC-CceeecCCCChHHH
Confidence            478899999  999999999999999 88 432210  111234568889999999999999999 99999999999999


Q ss_pred             HHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHhccc
Q psy12847        100 LVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKI  177 (188)
Q Consensus       100 ~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E~~~  177 (188)
                      +||++|++||||+|+||+|||+++|.|+++||||+||++||++++|||||||+++|+++||+||.+.|++||++|+..
T Consensus        77 ~Vw~~l~~Ip~G~t~tY~~lA~~~g~p~a~RAVg~A~~~NP~~iiIPCHRVv~~~G~lggy~gG~~~K~~LL~~E~~~  154 (155)
T PRK00901         77 KVWKALQEIPYGETRSYKEIAVNIGNPKACRAVGLANNKNPIPIFIPCHRVIGANGKLVGYAGGLDIKEKLLKLEKEN  154 (155)
T ss_pred             HHHHHHccCCCCCcCCHHHHHHHHCCCchHHHHHHHHHhCCCCCccCCceEECCCCCCCCCCCcHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999863

>PRK10286 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; Provisional

Probab=100.00  E-value=3e-49  Score=320.30  Aligned_cols=155  Identities=28%  Similarity=0.503  Sum_probs=134.7

Q ss_pred             eEEEEEEeccCccceEEEEEecc-cccc-cc-cccch--hh-hhhcc------cCChhHHHHHHHHHHHhcCCCCCCcc-
Q psy12847         21 KMLIAYYDKSCIIQAIMFGANPE-YLYV-DL-TKLYS--HI-EYIKM------FESKQSRDIIDRLEAYIVNPKQNCLD-   87 (188)
Q Consensus        21 ~~~~~~~~tP~~~G~i~i~a~~~-gL~~-~f-d~~~~--~~-~~~~~------~~~~~l~~~~~qL~~YF~G~~~~~F~-   87 (188)
                      .|+|.+++||  +|.+.++++++ +|+. .| +....  .. .....      ...+...++.+||++||+|++.. |+ 
T Consensus         3 ~~~~~~~~sP--iG~l~i~~~~~~~l~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Yf~g~~~~-f~~   79 (171)
T PRK10286          3 RLLEEKIATP--LGPLWVICDEQFRLRAVEWEEYSERMVQLLDIHYRKEGYERISATNPGGLSDKLRDYFAGNLSI-IDT   79 (171)
T ss_pred             cccceeeeCC--CeeEEEEEeCCCcEEEEEecCCccchhhhccccccccccccccccCHHHHHHHHHHHHCCCCCC-CCc
Confidence            4789999999  99999999999 6999 88 43211  10 00000      11123357899999999999999 96 


Q ss_pred             cccccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHH
Q psy12847         88 IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIK  167 (188)
Q Consensus        88 lpl~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k  167 (188)
                      +|+++.||+||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|+||+||.+.|
T Consensus        80 ~pl~~~gt~fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~aaRaVG~A~~~Np~~i~iPCHRVv~~~G~l~gy~gG~~~K  159 (171)
T PRK10286         80 LPTATGGTPFQREVWQTLRTIPCGQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRK  159 (171)
T ss_pred             ccccCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHhCCCChHHHHHHHHHhCCCCCccCCceEECCCCCcCCCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccc
Q psy12847        168 ETLIKIEQKIV  178 (188)
Q Consensus       168 ~~LL~~E~~~~  178 (188)
                      ++||++|++.+
T Consensus       160 ~~LL~~E~~~~  170 (171)
T PRK10286        160 EWLLRHEGYLL  170 (171)
T ss_pred             HHHHHHcCCcc
Confidence            99999999853

>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]

Probab=100.00  E-value=2.3e-48  Score=314.66  Aligned_cols=152  Identities=32%  Similarity=0.598  Sum_probs=131.9

Q ss_pred             EEEEEEeccCccceEEEEEeccc-ccc-cc-cccc--h---hhhhh-----cccCChhHHHHHHHHHHHhcCCCCCCcc-
Q psy12847         22 MLIAYYDKSCIIQAIMFGANPEY-LYV-DL-TKLY--S---HIEYI-----KMFESKQSRDIIDRLEAYIVNPKQNCLD-   87 (188)
Q Consensus        22 ~~~~~~~tP~~~G~i~i~a~~~g-L~~-~f-d~~~--~---~~~~~-----~~~~~~~l~~~~~qL~~YF~G~~~~~F~-   87 (188)
                      ++|..++||  +|.+.+++++.+ ++. .| +...  .   .....     ...+.+.+....+||++||+|++.. |+ 
T Consensus         2 ~~~~~~~s~--~G~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yf~g~~~~-~~~   78 (168)
T COG0350           2 LYYALMLSP--LGPELLALSYGYGLVALIFDDQGDVETYLDLAQALGPSALDPGAARALGGLLRELEAYFNGKEPD-FDP   78 (168)
T ss_pred             chhhcccCC--cccEEEEEeCCCcEEEEEcCCcccHHHHhhhhccccccccCccchhhHHHHHHHHHHHHcCCCcc-cCC
Confidence            567889999  999999996655 777 88 5311  1   11111     1234467889999999999999888 88 


Q ss_pred             -cccccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHH
Q psy12847         88 -IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYI  166 (188)
Q Consensus        88 -lpl~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~  166 (188)
                       +|+++.||+||++||++|++||||+|+||+|||+++|.|+++||||+||++||++|+|||||||++||+|+||+||.++
T Consensus        79 ~l~l~~~gt~Fq~~Vw~aL~~IP~Get~TY~eiA~~ig~p~a~rAVG~A~~~NPl~IiIPCHRVig~~G~L~Gy~~G~~~  158 (168)
T COG0350          79 PLPLVLHGTGFQGRVWQALREIPYGETVTYGEIARRLGRPTAVRAVGNANGANPLPIIIPCHRVIGADGDLGGYAGGLER  158 (168)
T ss_pred             ccccccCCChHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCcHHHHHHHHhccCCceEEecCeEeEcCCCCccCccchHHH
Confidence             7777789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q psy12847        167 KETLIKIEQK  176 (188)
Q Consensus       167 k~~LL~~E~~  176 (188)
                      |+|||++|+.
T Consensus       159 K~~LL~~E~~  168 (168)
T COG0350         159 KKWLLELEGA  168 (168)
T ss_pred             HHHHHHhhcC
Confidence            9999999984

>PRK15435 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional

Probab=100.00  E-value=1.2e-46  Score=334.82  Aligned_cols=158  Identities=30%  Similarity=0.469  Sum_probs=141.3

Q ss_pred             ccceeEEEEEEeccCccceEEEEEecccccc-cc-cccc---hhhhhhc-----ccCChhHHHHHHHHHHHhcCCCCCCc
Q psy12847         17 CIGTKMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLY---SHIEYIK-----MFESKQSRDIIDRLEAYIVNPKQNCL   86 (188)
Q Consensus        17 ~~g~~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~---~~~~~~~-----~~~~~~l~~~~~qL~~YF~G~~~~~F   86 (188)
                      ..+..+.|.+++||  +|.+.++++++||+. .| +...   ..+...+     ...++.+.++.+||++||+|++.. |
T Consensus       184 ~~~~~i~~~~~~tp--~G~~~i~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yf~g~~~~-f  260 (353)
T PRK15435        184 GENLAVRYALADCE--LGRCLVAESERGICAILLGDDDAALISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTP-L  260 (353)
T ss_pred             CCcccceeEEEecc--ceEEEEEEcCCceeEEEecCCcchHHHHHHhhcccccccCCchHHHHHHHHHHHHHcCCCCC-C
Confidence            45678999999999  999999999999999 88 4321   1122221     123457888899999999999999 9


Q ss_pred             ccccccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHH
Q psy12847         87 DIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYI  166 (188)
Q Consensus        87 ~lpl~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~  166 (188)
                      ++||++.||+||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+||||+||.+.
T Consensus       261 ~lpl~~~gt~f~~~v~~~l~~ip~G~~~tY~~~a~~~g~p~a~ravg~a~~~np~~~~iPchRvv~~~g~l~g~~~g~~~  340 (353)
T PRK15435        261 TLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGALSGYRWGVSR  340 (353)
T ss_pred             CccccCCCCHHHHHHHHHHhcCCCCCcCcHHHHHHHhCCCChHHHHHHHHHhCCCCcccCCceeECCCCCcCCCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccc
Q psy12847        167 KETLIKIEQKI  177 (188)
Q Consensus       167 k~~LL~~E~~~  177 (188)
                      |++||++|+..
T Consensus       341 k~~Ll~~e~~~  351 (353)
T PRK15435        341 KAQLLRREAEN  351 (353)
T ss_pred             HHHHHHHhccc
Confidence            99999999864

>KOG4062|consensus

Probab=100.00  E-value=2.7e-37  Score=245.65  Aligned_cols=152  Identities=29%  Similarity=0.506  Sum_probs=122.1

Q ss_pred             EEEEEEeccCccce--EEEEEecccccc-cc-ccc-ch----hhhhhcc--cCChhHHHHHHHHHHHhcCCCCCCcccc-
Q psy12847         22 MLIAYYDKSCIIQA--IMFGANPEYLYV-DL-TKL-YS----HIEYIKM--FESKQSRDIIDRLEAYIVNPKQNCLDIK-   89 (188)
Q Consensus        22 ~~~~~~~tP~~~G~--i~i~a~~~gL~~-~f-d~~-~~----~~~~~~~--~~~~~l~~~~~qL~~YF~G~~~~~F~lp-   89 (188)
                      .+|.+..|-  .|.  |.+....+|+.. .+ ++. ..    ..+..+.  ...+....++.++++||.-.... ..+| 
T Consensus         5 c~y~f~etd--~gqa~l~~~~~~qglv~i~Ll~d~l~~~~~~Evqd~~p~l~~~k~~~t~k~~i~~yf~~le~~-~~~p~   81 (178)
T KOG4062|consen    5 CEYKFTETD--SGQAKLELSGCEQGLVEIKLLGDGLSAADAVEVQDPAPVLGGPKPLMTCKAWINAYFHQLEAI-EEFPV   81 (178)
T ss_pred             eEEEEEEec--cCceeEEEecccccchhhhhcccchhhhhhhhccccchhhcCCCcchHHHHHHHHHHhChhhc-ccCCc
Confidence            456777776  664  555555777777 44 222 11    1111111  12245677899999999987654 4555 


Q ss_pred             -cccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHH
Q psy12847         90 -FKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKE  168 (188)
Q Consensus        90 -l~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~  168 (188)
                       ..+.||+||++||++|..||+|+|+||+|||+.+|+|+++||||+||+.|+++++|||||||+++|.+++|.||...|+
T Consensus        82 ~~~~~~t~F~~kVw~al~~i~~Gev~tY~~iA~~iG~PsaaRaVg~A~~~n~la~lvPcHRVv~s~g~~s~y~wg~a~k~  161 (178)
T KOG4062|consen   82 HPVMRGTDFQRKVWDALCEIPYGEVSTYGQIARRIGNPSAARAVGSAMAHNNLAILVPCHRVVGSNGTLSKYDWGAALKR  161 (178)
T ss_pred             cceeccchHHHHHHHHHhccCCCceeeHHHHHHHhCCcHHHHHHHHHHccCCCcEEecceeeecCCCCccccchhHHHHH
Confidence             4567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc
Q psy12847        169 TLIKIEQK  176 (188)
Q Consensus       169 ~LL~~E~~  176 (188)
                      +||++|+.
T Consensus       162 ~ll~~E~~  169 (178)
T KOG4062|consen  162 QLLALEGE  169 (178)
T ss_pred             HHHhhccc
Confidence            99999997

>TIGR00589 ogt O-6-methylguanine DNA methyltransferase

Probab=100.00  E-value=5.5e-37  Score=220.84  Aligned_cols=80  Identities=48%  Similarity=0.850  Sum_probs=78.8

Q ss_pred             ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHh
Q psy12847         95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE  174 (188)
Q Consensus        95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E  174 (188)
                      |+||++||++|.+||+|+|+||++||+.+|.|+++|+||+||++||++++|||||||+++|++++|.+|...|++||++|
T Consensus         1 t~f~~~V~~~l~~IP~G~v~TYg~iA~~~g~p~~~RaVg~al~~np~~~~iPcHRVv~s~G~l~~y~~g~~~k~~lL~~E   80 (80)
T TIGR00589         1 TPFQQRVWQALRTIPYGETKSYGQLAARIGNPKAVRAVGGANGRNPLAILVPCHRVIGKNGSLTGYAGGVELKKFLLEHE   80 (80)
T ss_pred             ChHHHHHHHHHhCCCCCCcCCHHHHHHHhCCCChHHHHHHHHHhCCCCCCCCCceeECCCCCCCCCCCcHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999988

All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF01035 DNA_binding_1: 6-O-methylguanine DNA methyltransferase, DNA binding domain; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases

Probab=100.00  E-value=3.1e-36  Score=218.89  Aligned_cols=85  Identities=48%  Similarity=0.888  Sum_probs=78.3

Q ss_pred             ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHh
Q psy12847         95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE  174 (188)
Q Consensus        95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E  174 (188)
                      |+||++||++|++||+|+|+||++||+.+|.|+++|+||+||+.||.+++|||||||+++|++++|++|...|++||+.|
T Consensus         1 T~f~~~V~~~v~~IP~G~v~TYg~iA~~~g~p~~ar~Vg~al~~np~~~~iP~HRVv~~~G~l~~~~~g~~~k~~lL~~E   80 (85)
T PF01035_consen    1 TPFQRRVWEAVRQIPYGKVTTYGEIARLLGRPKAARAVGSALARNPIPIIIPCHRVVNSDGSLGGYRGGIERKRALLEAE   80 (85)
T ss_dssp             -HHHHHHHHHHTTS-TT-BEEHHHHHHHTT-TTCHHHHHHHHHTSSCTTTSGGGGEEBTTSBECTTTTCHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHcCCCCceEeHHHHHHHHhhcccHHHHHHHhccccccCCCCeEEEECCCCCcCCCCCcHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy12847        175 QKIVS  179 (188)
Q Consensus       175 ~~~~~  179 (188)
                      |+.|+
T Consensus        81 gv~~~   85 (85)
T PF01035_consen   81 GVPFK   85 (85)
T ss_dssp             TSS--
T ss_pred             CCccC
Confidence            99874

The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources [].; GO: 0003824 catalytic activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A 2KIM_A 2KIF_A ....

>PRK03887 methylated-DNA--protein-cysteine methyltransferase; Provisional

Probab=100.00  E-value=1.5e-35  Score=239.77  Aligned_cols=107  Identities=27%  Similarity=0.477  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhcCCCCCCcc--cccccCC-ChhHHHHHHHhc-ccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCC
Q psy12847         67 SRDIIDRLEAYIVNPKQNCLD--IKFKIEG-TDFQKLVWSELC-KIPFGSLCSYADVARNIGRPKSARAVANACGQNNIP  142 (188)
Q Consensus        67 l~~~~~qL~~YF~G~~~~~F~--lpl~~~g-t~f~~~V~~~l~-~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~  142 (188)
                      ..+..+++.+||.|...+ |+  .+++..| |+||++||++|. +||+|+|+||+|||+++|.  ++||||+||++||++
T Consensus        61 ~~~~~~~l~~~l~g~~~~-~~~~~~l~~~g~T~Fq~rV~~~Lv~~IP~G~v~TYgqIA~~~G~--aaRAVG~Al~~NP~~  137 (175)
T PRK03887         61 PSDYPELVFKVLIGKISN-EEGLEELSFEGLTPFERKVYEWLTKNVKRGEVITYGELAKALNT--SPRAVGGAMKRNPYP  137 (175)
T ss_pred             ChhHHHHHHHHHcCCccc-cccCcccCcCCCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHCc--hHHHHHHHHHhCCCC
Confidence            345678889999999998 87  5688888 999999999765 8999999999999999996  799999999999999


Q ss_pred             CCCCceeeeCCCCCcCCCCCcHHHHHHHHHHhccc
Q psy12847        143 ILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKI  177 (188)
Q Consensus       143 ~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E~~~  177 (188)
                      ++|||||||+++| +++|++|...|++||++||+.
T Consensus       138 i~IPCHRVV~s~G-~ggy~~G~~~K~~LL~~EGv~  171 (175)
T PRK03887        138 IIVPCHRVVGRKN-PGLYTPKPEYKKFLLEVEGVK  171 (175)
T ss_pred             CccCCeeEECCCC-CcCCCCCHHHHHHHHHHcCCc
Confidence            9999999999999 689999999999999999975

>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks

Probab=99.98  E-value=9.3e-33  Score=197.88  Aligned_cols=79  Identities=51%  Similarity=0.951  Sum_probs=77.6

Q ss_pred             hHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHhc
Q psy12847         97 FQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQ  175 (188)
Q Consensus        97 f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E~  175 (188)
                      ||++||+.|.+||+|+++||++||+.+|.|.++|+||+||++||.+++|||||||+++|.+++|.+|...|++||++||
T Consensus         1 ~~~~V~~~v~~IP~G~v~TYg~iA~~~g~p~~~R~Vg~al~~np~~~~vP~HRVv~~~g~~~~~~~g~~~q~~lL~~Eg   79 (79)
T cd06445           1 FQRRVWEALRQIPYGEVTTYGQIAKLAGTPKAARAVGSALARNPIPILIPCHRVVRSDGGLGGYRGGLERKRELLELEG   79 (79)
T ss_pred             CHHHHHHHHhcCCCCCcCcHHHHHHHHCCCCcHHHHHHHHHhCCCCCCCCceeEECCCCCcCCCCCcHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999999997

ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of

>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]

Probab=99.93  E-value=2.6e-26  Score=170.32  Aligned_cols=92  Identities=26%  Similarity=0.365  Sum_probs=87.3

Q ss_pred             CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHH
Q psy12847         94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKI  173 (188)
Q Consensus        94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~  173 (188)
                      ..+|.++||+.+.+||+|+|+||||||+.+|.|++||.||.+|+.-|....+||||||+++|.|+-+..+..+|+.||..
T Consensus         4 ~def~~~v~~vv~~IP~GkV~TYGdIA~laG~p~~ARqVG~il~~l~~~s~lPWhRVvns~G~isl~~~~~~~Q~~lL~a   83 (103)
T COG3695           4 ADEFTQRVLDVVAAIPEGKVSTYGDIAKLAGLPRAARQVGRILKHLPEGSDLPWHRVVNSDGRISLPGPDKQRQRELLLA   83 (103)
T ss_pred             hhHHHHHHHHHHHhCCCCceeeHHHHHHHhCCChhHHHHHHHHhhCCCCCCCChhheecCCCcccCCCccHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999887788899999999


Q ss_pred             hccccccccccc
Q psy12847        174 EQKIVSEKIQVH  185 (188)
Q Consensus       174 E~~~~~~~~~v~  185 (188)
                      ||+.+++.++++
T Consensus        84 EGv~~~~~g~i~   95 (103)
T COG3695          84 EGVEFSDTGRID   95 (103)
T ss_pred             cCceeccCceee
Confidence            999999988764

>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2

Probab=99.35  E-value=4e-13  Score=94.73  Aligned_cols=69  Identities=12%  Similarity=0.240  Sum_probs=50.9

Q ss_pred             eEEEEEEeccCccceEEEEEecccccc-cc-cccch---hhhhhc-ccC-ChhHHHHHHHHHHHhcCCCC-CCccccccc
Q psy12847         21 KMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS---HIEYIK-MFE-SKQSRDIIDRLEAYIVNPKQ-NCLDIKFKI   92 (188)
Q Consensus        21 ~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~---~~~~~~-~~~-~~~l~~~~~qL~~YF~G~~~-~~F~lpl~~   92 (188)
                      +|+|.+++||  +|.+.|+++++|||+ .| +....   ...... ..+ .+.+..+.+||++||+|+|. . |++||++
T Consensus         1 ~l~y~~~~sP--lG~l~l~a~e~gL~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qL~eYF~G~r~~~-F~lPld~   77 (77)
T PF02870_consen    1 MLYYTTIDSP--LGPLLLAASEKGLCGIDFEDQDFELMADLPKWFPQDDEAPLLAEAKQQLDEYFAGERTPE-FDLPLDI   77 (77)
T ss_dssp             --EEEEEEET--TEEEEEEEETTCEEEEEEEC-HHHCCHHHCCCTTTSCCHCCHHHHHHHHHHHHHHHHS---B-SHCHH
T ss_pred             CeEEEEecCC--CeEEEEEEECCeEEEEEECCCcchhhhhhhhhhhcccccccHHHHHHHHHHHHcCCCCCC-CcCCccC
Confidence            4799999999  999999999999999 88 43321   111111 112 35899999999999999999 8 9999974

1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.

>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A

Probab=83.69  E-value=1.4  Score=27.63  Aligned_cols=39  Identities=23%  Similarity=0.262  Sum_probs=21.7

Q ss_pred             ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhC
Q psy12847         95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQN  139 (188)
Q Consensus        95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~N  139 (188)
                      |+.++.....+.+    +-.|+.+||+.+|.  +.-.|.+.+.+|
T Consensus         6 t~~eR~~I~~l~~----~G~s~~~IA~~lg~--s~sTV~relkR~   44 (44)
T PF13936_consen    6 TPEERNQIEALLE----QGMSIREIAKRLGR--SRSTVSRELKRN   44 (44)
T ss_dssp             ------HHHHHHC----S---HHHHHHHTT----HHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH----cCCCHHHHHHHHCc--CcHHHHHHHhcC
Confidence            4556666666644    44899999999997  777888888765

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=83.31  E-value=1.5  Score=30.04  Aligned_cols=42  Identities=24%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             ChhHHHHHHHhcc--cCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847         95 TDFQKLVWSELCK--IPFGSLCSYADVARNIGRPKSARAVANACG  137 (188)
Q Consensus        95 t~f~~~V~~~l~~--IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~  137 (188)
                      |+-|++|++.+.+  --.|..=|+.|||+.+|. ++...|-..|.
T Consensus         5 T~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~-~S~~tv~~~L~   48 (65)
T PF01726_consen    5 TERQKEVLEFIREYIEENGYPPTVREIAEALGL-KSTSTVQRHLK   48 (65)
T ss_dssp             -HHHHHHHHHHHHHHHHHSS---HHHHHHHHTS-SSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC-CChHHHHHHHH
Confidence            7889999999877  456888899999999997 35666665554

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
1sfe_A	180	Ada O6-Methylguanine-Dna Methyltransferase From Esc		2e-16
1t39_A	188	Human O6-Alkylguanine-Dna Alkyltransferase Covalent		2e-08
1qnt_A	176	X-Ray Structure Of Human O6alkylguanine-Dna Alkyltr		2e-08
1yfh_A	179	Wt Human O6-Alkylguanine-Dna Alkyltransferase Bound		2e-08
1eh6_A	207	Human O6-Alkylguanine-Dna Alkyltransferase Length =		3e-08
2g7h_A	167	Structure Of An O6-Methylguanine Dna Methyltransfer		1e-07
1t38_A	188	Human O6-Alkylguanine-Dna Alkyltransferase Bound To		2e-07
3kzy_A	182	Crystal Structure Of Snap-Tag Length = 182		3e-07
1eh7_A	207	Methylated Human O6-Alkylguanine-Dna Alkyltransfera		3e-07
3gva_A	116	Crystal Structure Analysis Of S. Pombe Atl Length =		1e-06
3kzz_A	182	Crystal Structure Of Snap-Tag Bound To Its Substrat		2e-06
3l00_A	182	Crystal Structure Of Benzylated Snap-Tag Length = 1		4e-06
1mgt_A	174	Crystal Structure Of O6-Methylguanine-Dna Methyltra		6e-06
1wrj_A	156	Crystal Structure Of O6-Methylguanine Methyltransfe		2e-05

>pdb|1SFE|A Chain A, Ada O6-Methylguanine-Dna Methyltransferase From Escherichia Coli Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 15  SSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIK---MFESKQSRDII 71
           + C   + L+A  ++   I AI+ G +   L  +L +++   +      MF+ +  R++I
Sbjct: 20  ADCELGRCLVAESERG--ICAILLGDDDATLISELQQMFPAADNAPADLMFQ-QHVREVI 76
Query: 72  DRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARA 131
             L     N +   L +   I GT FQ+ VW  L  IP G   SY  +A  IG+PK+ RA
Sbjct: 77  ASL-----NQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRA 131
Query: 132 VANACGQNNIPILIPCHRVIR 152
           VA+AC  N + I+IPCHRV+R
Sbjct: 132 VASACAANKLAIVIPCHRVVR 152

>pdb|1T39|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase Covalently Crosslinked To Dna Length = 188

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIPCHRV+      
Sbjct: 108 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 167
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 168 GNYSGGLAVKEWLLAHE 184

>pdb|1QNT|A Chain A, X-Ray Structure Of Human O6alkylguanine-Dna Alkyltransferase Length = 176

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIPCHRV+      
Sbjct: 96  RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172

>pdb|1YFH|A Chain A, Wt Human O6-Alkylguanine-Dna Alkyltransferase Bound To Dna Containing An Alkylated Cytosine Length = 179

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIPCHRV+      
Sbjct: 96  RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172

>pdb|1EH6|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase Length = 207

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIPCHRV+      
Sbjct: 96  RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172

>pdb|2G7H|A Chain A, Structure Of An O6-Methylguanine Dna Methyltransferase From Methanococcus Jannaschii (Mj1529) Length = 167

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 88  IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPC 147
           I +K+E  +F K V   +  I FG   +Y D+A+ +    S RAV  A  +N +P++IPC
Sbjct: 71  ISYKLEVPEFTKKVLDIVKDIEFGKTLTYGDIAKKLN--TSPRAVGMALKRNPLPLIIPC 128
Query: 148 HRVI 151
           HRV+
Sbjct: 129 HRVV 132

>pdb|1T38|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase Bound To Dna Containing O6-Methylguanine Length = 188

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIP HRV+      
Sbjct: 108 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPSHRVVCSSGAV 167
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 168 GNYSGGLAVKEWLLAHE 184

>pdb|3KZY|A Chain A, Crystal Structure Of Snap-Tag Length = 182

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY+ +A   G P +  AV  A   N +PILIPCHRV++     
Sbjct: 99  RQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDV 158
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 159 GGYEGGLAVKEWLLAHE 175

>pdb|1EH7|A Chain A, Methylated Human O6-Alkylguanine-Dna Alkyltransferase Length = 207

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIP HRV+      
Sbjct: 96  RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPXHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172

>pdb|3GVA|A Chain A, Crystal Structure Analysis Of S. Pombe Atl Length = 116

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 96  DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVI 151
           +F   V+  +C+IP+G + +Y ++AR +G P  AR V  A    +    +P HRVI
Sbjct: 5   EFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVI 60

>pdb|3KZZ|A Chain A, Crystal Structure Of Snap-Tag Bound To Its Substrate Benzylguanine Length = 182

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY+ +A   G P +  AV  A   N +PILIP HRV++     
Sbjct: 99  RQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPAHRVVQGDLDV 158
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 159 GGYEGGLAVKEWLLAHE 175

>pdb|3L00|A Chain A, Crystal Structure Of Benzylated Snap-Tag Length = 182

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 98  QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
           ++++W  L  + FG + SY+ +A   G P +  AV  A   N +PILIP HRV++     
Sbjct: 99  RQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPXHRVVQGDLDV 158
Query: 158 XXXXXXKYIKETLIKIE 174
                   +KE L+  E
Sbjct: 159 GGYEGGLAVKEWLLAHE 175

>pdb|1MGT|A Chain A, Crystal Structure Of O6-Methylguanine-Dna Methyltransferase From Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Strain Kod1 Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 95  TDFQKLVWSELCK-IPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVI 151
           T F+K V+  L K +  GS+ +Y D+A+ +    S RAV  A  +N  PI++PCHRV+
Sbjct: 90  TPFEKKVYEWLTKNVKRGSVITYGDLAKALN--TSPRAVGGAMKRNPYPIVVPCHRVV 145

>pdb|1WRJ|A Chain A, Crystal Structure Of O6-Methylguanine Methyltransferase From Sulfolobus Tokodaii Length = 156

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 69  DIIDRLEAYIVNPKQNCLD-IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPK 127
           D   +L+ Y    K +  + + FK    +F+  V+ E+ +I +G + +Y  VA  +    
Sbjct: 44  DFFYKLDLYFEGKKVDLTEPVDFK-PFNEFRIRVFKEVMRIKWGEVRTYKQVADAV--KT 100
Query: 128 SARAVANACGQNNIPILIPCHRVI 151
           S RAV  A  +NN+ ++IPCHRVI
Sbjct: 101 SPRAVGTALSKNNVLLIIPCHRVI 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
1sfe_A	180	ADA O6-methylguanine-DNA methyltransferase; enzyme	7e-54
3l00_A	182	SNAP-TAG; protein TAG, protein engineering, benzyl	2e-45
1eh6_A	207	O6-alkylguanine-DNA alkyltransferase; methyltransf	2e-44
2g7h_A	167	Methylated-DNA--protein-cysteine methyltransferase	3e-39
1mgt_A	174	MGMT, protein (O6-methylguanine-DNA methyltransfer	3e-38
1wrj_A	156	Methylated-DNA--protein-cysteine methyltransferase	4e-37
3gva_A	116	Alkyltransferase-like protein 1; alkylated DNA dam	3e-33
2kif_A	108	O6-methylguanine-DNA methyltransferase; methods de	4e-33

>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1 Length = 180

 Score =  168 bits (428), Expect = 7e-54
 Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 21  KMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVN 80
           + L+A  ++   I AI+ G +   L  +L +++   +          +  +  + A +  
Sbjct: 26  RCLVAESERG--ICAILLGDDDATLISELQQMFPAADNAP--ADLMFQQHVREVIASLNQ 81

Query: 81  PKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNN 140
                L +   I GT FQ+ VW  L  IP G   SY  +A  IG+PK+ RAVA+AC  N 
Sbjct: 82  RDTP-LTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANK 140

Query: 141 IPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQK 176
           + I+IPCHRV+R DGS  GY  G   K  L++ E +
Sbjct: 141 LAIVIPCHRVVRGDGSLSGYRWGVSRKAQLLRREAE 176

>3l00_A SNAP-TAG; protein TAG, protein engineering, benzylguanine, benzylated transferase; HET: BCS; 1.70A {Homo sapiens} PDB: 3kzy_A* 3kzz_A* 1yfh_A* 1t39_A* 1qnt_A 1t38_A* Length = 182

 Score =  147 bits (372), Expect = 2e-45
 Identities = 31/89 (34%), Positives = 50/89 (56%)

Query: 93  EGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIR 152
           + +  ++++W  L  + FG + SY+ +A   G P +  AV  A   N +PILIPCHRV++
Sbjct: 94  QESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQ 153

Query: 153 SDGSYGGYSSGKYIKETLIKIEQKIVSEK 181
            D   GGY  G  +KE L+  E   + ++
Sbjct: 154 GDLDVGGYEGGLAVKEWLLAHEGHRLGKR 182

>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A* Length = 207

 Score =  145 bits (368), Expect = 2e-44
 Identities = 35/89 (39%), Positives = 52/89 (58%)

Query: 93  EGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIR 152
           + +  ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIPCHRV+ 
Sbjct: 91  QESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVC 150

Query: 153 SDGSYGGYSSGKYIKETLIKIEQKIVSEK 181
           S G+ G YS G  +KE L+  E   + + 
Sbjct: 151 SSGAVGNYSGGLAVKEWLLAHEGHRLGKP 179

>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii} Length = 167

 Score =  130 bits (330), Expect = 3e-39
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 5/108 (4%)

Query: 74  LEAY--IVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARA 131
           L+ Y   ++ K+    I +K+E  +F K V   +  I FG   +Y D+A+ +    S RA
Sbjct: 55  LKLYFAEIDDKKVRELISYKLEVPEFTKKVLDIVKDIEFGKTLTYGDIAKKLN--TSPRA 112

Query: 132 VANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVS 179
           V  A  +N +P++IPCHRV+  +   GGYS G   K+ +++ E+  + 
Sbjct: 113 VGMALKRNPLPLIIPCHRVVAKNS-LGGYSYGLDKKKFILERERLNMV 159

>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1 Length = 174

 Score =  128 bits (324), Expect = 3e-38
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 9/171 (5%)

Query: 9   LVALNESSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHI--EYIKMFESKQ 66
           ++++ +       + I       + Q I F  +   L   +  L  H+    + +    Q
Sbjct: 1   MLSVEKFRVGERVVWIGVIFSGRV-QGIAFAFDRGTLMKRIHDLAEHLGKRGVSISLDVQ 59

Query: 67  SRDIIDRLEAYIV-NPKQNCLDIKFKIEG-TDFQKLVWSELCK-IPFGSLCSYADVARNI 123
             D  +++   ++          +   EG T F+K V+  L K +  GS+ +Y D+A+ +
Sbjct: 60  PSDYPEKVFKVLIGELDNASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKAL 119

Query: 124 GRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE 174
               S RAV  A  +N  PI++PCHRV+  DG  G YSSG   K+ L++IE
Sbjct: 120 N--TSPRAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYSSGIEEKKFLLEIE 167

>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii} Length = 156

 Score =  124 bits (315), Expect = 4e-37
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 87  DIKFKIEG-TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILI 145
                 +   +F+  V+ E+ +I +G + +Y  VA  +    S RAV  A  +NN+ ++I
Sbjct: 61  TEPVDFKPFNEFRIRVFKEVMRIKWGEVRTYKQVADAVK--TSPRAVGTALSKNNVLLII 118

Query: 146 PCHRVIRSDGSYGGYSSGKYIKETLIKIE 174
           PCHRVI  + S GGYS G  +K  L+++E
Sbjct: 119 PCHRVI-GEKSLGGYSRGVELKRKLLELE 146

>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* Length = 116

 Score =  113 bits (286), Expect = 3e-33
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 92  IEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVI 151
           +   +F   V+  +C+IP+G + +Y ++AR +G P  AR V  A    +    +P HRVI
Sbjct: 1   MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVI 60

Query: 152 RSDGSYGGYS--SGKYIKETLIKIE 174
            S G+       +G+  ++  ++ E
Sbjct: 61  NSRGTISKRDISAGEQRQKDRLEEE 85

>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A Length = 108

 Score =  113 bits (284), Expect = 4e-33
 Identities = 20/80 (25%), Positives = 35/80 (43%)

Query: 95  TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSD 154
             F   +++ + +IP G + +Y ++A+  G P  AR V  A G       +P  RVI S 
Sbjct: 2   DQFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQ 61

Query: 155 GSYGGYSSGKYIKETLIKIE 174
           G           ++  ++ E
Sbjct: 62  GKISLKGRDLDRQKQKLEAE 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
1sfe_A	180	ADA O6-methylguanine-DNA methyltransferase; enzyme	100.0
3l00_A	182	SNAP-TAG; protein TAG, protein engineering, benzyl	100.0
1wrj_A	156	Methylated-DNA--protein-cysteine methyltransferase	100.0
1eh6_A	207	O6-alkylguanine-DNA alkyltransferase; methyltransf	100.0
2g7h_A	167	Methylated-DNA--protein-cysteine methyltransferase	100.0
1mgt_A	174	MGMT, protein (O6-methylguanine-DNA methyltransfer	100.0
2kif_A	108	O6-methylguanine-DNA methyltransferase; methods de	100.0
3gva_A	116	Alkyltransferase-like protein 1; alkylated DNA dam	100.0
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	94.32
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	91.04
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	90.23

>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1

Probab=100.00  E-value=4e-51  Score=332.75  Aligned_cols=159  Identities=30%  Similarity=0.460  Sum_probs=140.6

Q ss_pred             ccceeEEEEEEeccCccceEEEEEecccccc-cc-cccch---hhhhhc-----ccCChhHHHHHHHHHHHhcCCCCCCc
Q psy12847         17 CIGTKMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS---HIEYIK-----MFESKQSRDIIDRLEAYIVNPKQNCL   86 (188)
Q Consensus        17 ~~g~~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~---~~~~~~-----~~~~~~l~~~~~qL~~YF~G~~~~~F   86 (188)
                      ..+..|+|.+++||  +|.+.++++++||+. .| ++...   .+...+     ..+++.++++.+||++||+|++.. |
T Consensus        10 g~~~~i~~~~~~sp--lG~l~l~~~~~gl~~l~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~qL~~Yf~G~~~~-f   86 (180)
T 1sfe_A           10 GENLAVRYALADCE--LGRCLVAESERGICAILLGDDDATLISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTP-L   86 (180)
T ss_dssp             ---CCCEEEEEEET--TEEEEEEECSSSEEEEEEESCHHHHHHHHHHHSTTCEECTTCHHHHHHHHHHHHHHHSSSCC-C
T ss_pred             CCCceEEEEEEeCC--ccEEEEEEECCEeEEEEeCCchhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhcCCCCC-C
Confidence            34667899999999  999999999999999 88 43221   121111     224578899999999999999999 9


Q ss_pred             ccccccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHH
Q psy12847         87 DIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYI  166 (188)
Q Consensus        87 ~lpl~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~  166 (188)
                      ++|+++.||+||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||++||+|+||+||.+.
T Consensus        87 ~lpl~~~gt~Fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~a~RaVg~A~~~np~~~~iPcHRVv~~~G~l~gy~~g~~~  166 (180)
T 1sfe_A           87 TLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGSLSGYRWGVSR  166 (180)
T ss_dssp             CSCBCCCSCHHHHHHHHHHTTSCTTCCEEHHHHHHHTTCTTCHHHHHHHHHTCCBBTTBCGGGEECTTSCCTTCTTCHHH
T ss_pred             CCCcccCcChHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCchHHHHHHHHHhCCCCcccCcceEECCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccc
Q psy12847        167 KETLIKIEQKIV  178 (188)
Q Consensus       167 k~~LL~~E~~~~  178 (188)
                      |++||++||+..
T Consensus       167 k~~LL~~Eg~~~  178 (180)
T 1sfe_A          167 KAQLLRREAENE  178 (180)
T ss_dssp             HHHHHHHHSCC-
T ss_pred             HHHHHHHhCCcc
Confidence            999999999854

>3l00_A SNAP-TAG; protein TAG, protein engineering, benzylguanine, benzylated transferase; HET: BCS; 1.70A {Homo sapiens} PDB: 3kzy_A* 3kzz_A* 1yfh_A* 1t39_A* 1qnt_A 1t38_A*

Probab=100.00  E-value=4.4e-51  Score=332.70  Aligned_cols=160  Identities=26%  Similarity=0.347  Sum_probs=137.3

Q ss_pred             cceeEEEEEEeccCccceEEEEEecccccc-cc-cccch--hhhh-----hcccCChhHHHHHHHHHHHhcCCCCCCccc
Q psy12847         18 IGTKMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS--HIEY-----IKMFESKQSRDIIDRLEAYIVNPKQNCLDI   88 (188)
Q Consensus        18 ~g~~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~--~~~~-----~~~~~~~~l~~~~~qL~~YF~G~~~~~F~l   88 (188)
                      ..+.|+|.+++||  +|.+.|+++++||+. +| ++...  ....     .....++.++++.+||++||+|++.. |++
T Consensus         6 ~~~~m~~~~~~SP--lG~l~l~a~~~gL~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ql~~Yf~g~~~~-f~l   82 (182)
T 3l00_A            6 KDCEMKRTTLDSP--LGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAI-EEF   82 (182)
T ss_dssp             --CCCEEEEECCT--TSCEEEEEETTEEEEEEECC------------------CCSSHHHHHHHHHHHHHHCGGGG-GGS
T ss_pred             ccceEEEEEEECC--ceEEEEEEECCEEEEEEECCCcchhhhhhhcccchhhccCcHHHHHHHHHHHHHHcCCCcC-CCc
Confidence            3567899999999  999999999999999 88 54321  1111     11123367899999999999999998 999


Q ss_pred             ccc------cCCChhHHHHHHH-hcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCC
Q psy12847         89 KFK------IEGTDFQKLVWSE-LCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYS  161 (188)
Q Consensus        89 pl~------~~gt~f~~~V~~~-l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~  161 (188)
                      ||+      +.||+||++||++ +++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||++||+|+||+
T Consensus        83 pl~~~~~~~~~gt~Fq~~Vw~~ll~~IP~G~t~tYg~iA~~~g~p~a~RaVG~A~~~Np~~i~iPCHRVv~~~G~l~gy~  162 (182)
T 3l00_A           83 PVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYE  162 (182)
T ss_dssp             CCCCBCSGGGTSCCHHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHHHTCSSBTTBCGGGEESBTTBCCCCT
T ss_pred             CcccccccccCCCHHHHHHHHHHHhhCCCCCEEeHHHHHHHhCCCChHHHHHHHHHhCCCCCeeCceEEECCCCCCCCCC
Confidence            997      5799999999976 568999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhcccccc
Q psy12847        162 SGKYIKETLIKIEQKIVSE  180 (188)
Q Consensus       162 ~g~~~k~~LL~~E~~~~~~  180 (188)
                      ||.++|++||++|++.++.
T Consensus       163 gG~~~K~~LL~~Eg~~~~~  181 (182)
T 3l00_A          163 GGLAVKEWLLAHEGHRLGK  181 (182)
T ss_dssp             TCHHHHHHHHHHTTCTTCC
T ss_pred             CCHHHHHHHHHhcCCccCC
Confidence            9999999999999998853

>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.1e-50  Score=319.66  Aligned_cols=148  Identities=26%  Similarity=0.474  Sum_probs=134.4

Q ss_pred             EEEEEEeccCccceEEEEEecccccc-cc-cccchhhhhhcccCChhHHHHHHHHHHHhcCCCCCCcccccccCC-ChhH
Q psy12847         22 MLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEG-TDFQ   98 (188)
Q Consensus        22 ~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~~~~~~~~~~~~~l~~~~~qL~~YF~G~~~~~F~lpl~~~g-t~f~   98 (188)
                      ++|.+++||  +|.+.++++++||+. +| ++....     ..+++.++++.+||++||+|++.. |++|+++.| |+||
T Consensus         2 i~~~~~~tp--~G~l~l~~~~~gl~~l~f~~~~~~~-----~~~~~~~~~~~~~l~~Yf~G~~~~-f~lpl~~~g~t~fq   73 (156)
T 1wrj_A            2 IVYGLYKSP--FGPITVAKNEKGFVMLDFCDCAERS-----SLDNDYFTDFFYKLDLYFEGKKVD-LTEPVDFKPFNEFR   73 (156)
T ss_dssp             CEEEEEEET--TEEEEEEECSSCEEEEESSCCCCGG-----GBCGGGGHHHHHHHHHHTTTCCCC-CCCCBCCTTSCHHH
T ss_pred             eEEEEEeCC--CeEEEEEEECCEEEEEEecCCcccc-----cCCCHHHHHHHHHHHHHHcCCCCC-CCeeecCCCCCHHH
Confidence            457899999  999999999999999 88 432211     133467889999999999999999 999999999 9999


Q ss_pred             HHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHhcccc
Q psy12847         99 KLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIV  178 (188)
Q Consensus        99 ~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E~~~~  178 (188)
                      ++||++|++||||+|+||+|||+.+|.|+  ||||+||++||++++|||||||++|| |+||+||.+.|++||++||+.+
T Consensus        74 ~~V~~~l~~IP~G~~~tYg~iA~~~g~p~--RaVG~A~~~np~~~~iPcHRVv~~~G-l~gy~~G~~~k~~LL~~Eg~~~  150 (156)
T 1wrj_A           74 IRVFKEVMRIKWGEVRTYKQVADAVKTSP--RAVGTALSKNNVLLIIPCHRVIGEKS-LGGYSRGVELKRKLLELEGIDV  150 (156)
T ss_dssp             HHHHHHHTTSCTTCCEEHHHHHHHTTSCH--HHHHHHHHTCSBTTTSCGGGEECSSS-CCCCTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHhCCCCCceEcHHHHHHHhCCCc--cHHHHHHHhCCCCCccCCCeEECCCC-CCCCCccHHHHHHHHHHcCCcc
Confidence            99999999999999999999999999998  99999999999999999999999999 9999999999999999999987


Q ss_pred             cc
Q psy12847        179 SE  180 (188)
Q Consensus       179 ~~  180 (188)
                      +.
T Consensus       151 ~~  152 (156)
T 1wrj_A          151 AK  152 (156)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A*

Probab=100.00  E-value=1.1e-49  Score=330.40  Aligned_cols=162  Identities=29%  Similarity=0.390  Sum_probs=141.9

Q ss_pred             eEEEEEEeccCccceEEEEEecccccc-cc-cccch--hhhh-----hcccCChhHHHHHHHHHHHhcCCCCCCcccccc
Q psy12847         21 KMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS--HIEY-----IKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFK   91 (188)
Q Consensus        21 ~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~--~~~~-----~~~~~~~~l~~~~~qL~~YF~G~~~~~F~lpl~   91 (188)
                      .|+|.+++||  +|.+.|+++++||+. .| ++...  ....     ....+++.++++.+||++||+|++.. |++||+
T Consensus         6 ~m~~~~~~sP--lG~l~la~~~~gl~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~qL~~YF~G~~~~-f~lPL~   82 (207)
T 1eh6_A            6 EMKRTTLDSP--LGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAI-EEFPVP   82 (207)
T ss_dssp             CCEEEEECCT--TSCEEEEEETTEEEEEEECC---------CCCCCBSSCCCSHHHHHHHHHHHHHHHCGGGG-GGSCCC
T ss_pred             eEEEEEEECC--CcEEEEEEECCEEEEEEeCCCcchhhhhhhcccccccccCCHHHHHHHHHHHHHHCCCCcc-CCcccc
Confidence            5789999999  999999999999999 88 43321  1000     11123467899999999999999998 999998


Q ss_pred             ------cCCChhHHHH-HHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcH
Q psy12847         92 ------IEGTDFQKLV-WSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGK  164 (188)
Q Consensus        92 ------~~gt~f~~~V-~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~  164 (188)
                            +.||+||++| |++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|+||+||.
T Consensus        83 ~~~~~~~~gt~Fq~~V~~~~l~~IP~G~~~TYg~iA~~~G~p~a~RaVG~A~~~Np~~~~iPCHRVv~~~G~l~gy~gG~  162 (207)
T 1eh6_A           83 ALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGL  162 (207)
T ss_dssp             CBCSHHHHSCCHHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHTTSCSSBTTBCGGGEECTTSCCCCCTTCH
T ss_pred             cccccccCCCHHHHHHHHHHhhcCCCCcEECHHHHHHHHCCCCcHHHHHHHHHhCCCCCcCCCCeEECCCCCCCCCCCcH
Confidence                  5899999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccccccccc
Q psy12847        165 YIKETLIKIEQKIVSEKIQVH  185 (188)
Q Consensus       165 ~~k~~LL~~E~~~~~~~~~v~  185 (188)
                      ++|++||++||+.+...+++.
T Consensus       163 ~~K~~LL~~Eg~~~~~~g~~~  183 (207)
T 1eh6_A          163 AVKEWLLAHEGHRLGKPGLGG  183 (207)
T ss_dssp             HHHHHHHHHTTCSSCCCCC--
T ss_pred             HHHHHHHHHcCCcccCCCccC
Confidence            999999999999998887764

>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}

Probab=100.00  E-value=7.8e-43  Score=280.42  Aligned_cols=141  Identities=25%  Similarity=0.362  Sum_probs=121.4

Q ss_pred             eEEEEEecccccc-cccccchhhh---h---hcccCChhHHHHHHHHHHHhcCC-----CCCCcccccccCCChhHHHHH
Q psy12847         35 AIMFGANPEYLYV-DLTKLYSHIE---Y---IKMFESKQSRDIIDRLEAYIVNP-----KQNCLDIKFKIEGTDFQKLVW  102 (188)
Q Consensus        35 ~i~i~a~~~gL~~-~fd~~~~~~~---~---~~~~~~~~l~~~~~qL~~YF~G~-----~~~~F~lpl~~~gt~f~~~V~  102 (188)
                      ...+++++++++. .+......+.   +   ....+++.+.++.+||++||+|+     +.. |++|+++  |+||++||
T Consensus         9 ~~Gi~~~~~~~~~v~lp~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Yf~G~~~~~~~~~-f~lpl~~--t~Fq~~Vw   85 (167)
T 2g7h_A            9 FIGMIFKGNQLVRNTIPLRREEIFNFMDGEVVSNPEDEHLKVAEIILKLYFAEIDDKKVREL-ISYKLEV--PEFTKKVL   85 (167)
T ss_dssp             EEEEEESSSSEEEEECCCCCTTGGGGCSSCSCSCCTTTTHHHHHHHHHHHTTCCCSCCTTTT-CCBCSCC--SSCCHHHH
T ss_pred             EEEEEEcCCCEEEEecCCCcHHHHHhCCcccccCCCCHHHHHHHHHHHHHHCCCCccccccc-cCccccc--HHHHHHHH
Confidence            5678889999988 7721111111   1   11123467899999999999999     888 9999999  99999999


Q ss_pred             HHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHhccccccc
Q psy12847        103 SELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVSEK  181 (188)
Q Consensus       103 ~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E~~~~~~~  181 (188)
                      ++|++||||+|+||+|||+.+|.|  +||||+||++||++++|||||||+++| ++||+||.+.|++||++||+.++.-
T Consensus        86 ~~l~~IP~G~t~TYg~iA~~~G~p--~RaVG~Al~~Np~~i~iPCHRVv~~~G-l~gy~gG~~~K~~LL~~Eg~~~~~~  161 (167)
T 2g7h_A           86 DIVKDIEFGKTLTYGDIAKKLNTS--PRAVGMALKRNPLPLIIPCHRVVAKNS-LGGYSYGLDKKKFILERERLNMVSF  161 (167)
T ss_dssp             HHHTTCCTTCCEEHHHHHHHHTSC--HHHHHHHHHTCSCTTTSGGGGEECSSS-CCCSSSCSHHHHHHHHHHHSSCCCC
T ss_pred             HHhcCCCCCCEeeHHHHHHHhCCC--HHHHHHHHHhCCCCCccCceeEECCCC-CCCCCccHHHHHHHHHHhCCccccC
Confidence            999999999999999999999998  799999999999999999999999999 9999999999999999999977543

>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1

Probab=100.00  E-value=1.1e-40  Score=269.73  Aligned_cols=152  Identities=26%  Similarity=0.385  Sum_probs=124.7

Q ss_pred             eEEEEEEeccCccceEEEEEe-cccccc-cc-cccch---h-------hhhhcccCC--hhHHHHHHHHHHHhcCCCCCC
Q psy12847         21 KMLIAYYDKSCIIQAIMFGAN-PEYLYV-DL-TKLYS---H-------IEYIKMFES--KQSRDIIDRLEAYIVNPKQNC   85 (188)
Q Consensus        21 ~~~~~~~~tP~~~G~i~i~a~-~~gL~~-~f-d~~~~---~-------~~~~~~~~~--~~l~~~~~qL~~YF~G~~~~~   85 (188)
                      +|+|..++..  -..+.+... ++|||. .| +....   .       +...+....  .....+.+++.+||.|.... 
T Consensus         1 ~i~~~~~~~~--~~~~~ig~~~~~gI~~i~f~d~~~~l~~~~~~~~~~l~~~~~~a~l~~~~~~~~~~i~~~~~g~~~~-   77 (174)
T 1mgt_A            1 MLSVEKFRVG--ERVVWIGVIFSGRVQGIAFAFDRGTLMKRIHDLAEHLGKRGVSISLDVQPSDYPEKVFKVLIGELDN-   77 (174)
T ss_dssp             CEEEEEEEET--TEEEEEEEEESSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCCCBCCCSHHHHHHHHHTTSSCG-
T ss_pred             CeEEEEEeeC--CceEEEEEecCCCEEEEEecCChHHHHHHHHHHHHHHHHhcccceeccCcHHHHHHHHHHHcccccC-
Confidence            4677777776  667888887 999999 88 43321   1       222222111  12234567788999999887 


Q ss_pred             cc--cccccCC-ChhHHHHHHHhc-ccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCC
Q psy12847         86 LD--IKFKIEG-TDFQKLVWSELC-KIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYS  161 (188)
Q Consensus        86 F~--lpl~~~g-t~f~~~V~~~l~-~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~  161 (188)
                      |+  .|+++.| |+||++||++|+ +||+|+|+||+|||+.+|.|  +||||+||++||++++|||||||+++| ++||+
T Consensus        78 ~~~~~~l~~~g~t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~G~p--~RaVG~A~~~Np~~~~iPcHRVv~~~G-l~gy~  154 (174)
T 1mgt_A           78 ASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTS--PRAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYS  154 (174)
T ss_dssp             GGGGGGBCCTTCCHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSC--HHHHHHHHHTCSCTTTSCGGGEEBTTB-CCCCT
T ss_pred             cccCCcccccCCChHHHHHHHHHHccCCCCceEeHHHHHHHhCCC--HHHHHHHHHhCCCCCcCCcCeEECCCC-CCCCC
Confidence            75  5899999 999999999999 99999999999999999998  999999999999999999999999999 99999


Q ss_pred             CcHHHHHHHHHHhcccc
Q psy12847        162 SGKYIKETLIKIEQKIV  178 (188)
Q Consensus       162 ~g~~~k~~LL~~E~~~~  178 (188)
                      ||.++|++||++||+.+
T Consensus       155 ~g~~~K~~LL~~Egv~~  171 (174)
T 1mgt_A          155 SGIEEKKFLLEIEGVKE  171 (174)
T ss_dssp             TCHHHHHHHHHHTTC--
T ss_pred             ccHHHHHHHHHHhCCcc
Confidence            99999999999999865

>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A

Probab=100.00  E-value=1.9e-39  Score=244.44  Aligned_cols=91  Identities=25%  Similarity=0.326  Sum_probs=88.8

Q ss_pred             ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHh
Q psy12847         95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE  174 (188)
Q Consensus        95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E  174 (188)
                      |+||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|+||++|.+.|++||++|
T Consensus         2 t~F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~aaRaVG~Al~~Np~~~~iPcHRVv~s~G~l~gy~~g~~~k~~LL~~E   81 (108)
T 2kif_A            2 DQFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKISLKGRDLDRQKQKLEAE   81 (108)
T ss_dssp             CHHHHHHHHHHTTCCTTCBEEHHHHHHHHTCTTCHHHHHHHHHHSCTTCSSCCTTEECTTSBCSCCTHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCCcHHHHHHHHHhCCCCCCCCCceeECCCCCCCCCCCcHHHHHHHHHHc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccc
Q psy12847        175 QKIVSEKIQVH  185 (188)
Q Consensus       175 ~~~~~~~~~v~  185 (188)
                      |+.++..++|+
T Consensus        82 gv~~~~~grvd   92 (108)
T 2kif_A           82 GIEVSEIGKIA   92 (108)
T ss_dssp             TCCCBTTTBCC
T ss_pred             CCeeCCCCEEE
Confidence            99999988874

>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*

Probab=100.00  E-value=5.5e-38  Score=239.04  Aligned_cols=89  Identities=28%  Similarity=0.503  Sum_probs=85.0

Q ss_pred             CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCC--CCcHHHHHHHH
Q psy12847         94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGY--SSGKYIKETLI  171 (188)
Q Consensus        94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy--~~g~~~k~~LL  171 (188)
                      .++||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|+||  .+|.+.|++||
T Consensus         3 ~t~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~G~p~aaRaVG~Al~~Np~~i~IPCHRVV~s~G~l~g~~~~~G~~~k~~LL   82 (116)
T 3gva_A            3 MDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKDRL   82 (116)
T ss_dssp             HHHHHHHHHHHHTTSCTTCBBCHHHHHHHTTCTTCHHHHHHHHHTSCTTCSSCGGGBCCTTSBCCCTTCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCCcHHHHHHHHHhCCCCcCCCceEEECCCCCCCCCcCCCcHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999999996  58999999999


Q ss_pred             HHhcccccccc
Q psy12847        172 KIEQKIVSEKI  182 (188)
Q Consensus       172 ~~E~~~~~~~~  182 (188)
                      ++||+.+...+
T Consensus        83 ~~Egv~~~~~~   93 (116)
T 3gva_A           83 EEEGVEIYQTS   93 (116)
T ss_dssp             HHTTCCCEECT
T ss_pred             HHcCCcccCCC
Confidence            99999997654

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=94.32  E-value=0.043  Score=38.27  Aligned_cols=43  Identities=14%  Similarity=0.204  Sum_probs=35.8

Q ss_pred             ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhC
Q psy12847         95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQN  139 (188)
Q Consensus        95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~N  139 (188)
                      ++.+++|++.|.+.++|+..|+.+||+.+|.+  .+.|-.++.+-
T Consensus         9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs--r~tV~~~L~~L   51 (81)
T 1qbj_A            9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTP--KKEINRVLYSL   51 (81)
T ss_dssp             HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCC--HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC--HHHHHHHHHHH
Confidence            34578899999999999999999999999985  46677776653

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=91.04  E-value=0.27  Score=33.60  Aligned_cols=41  Identities=17%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847         96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ  138 (188)
Q Consensus        96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~  138 (188)
                      +.+++|+..|.+-+.|+.+|+.+||+.+|.++  +.|-+.+.+
T Consensus        14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~--~tV~~~L~~   54 (77)
T 1qgp_A           14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPK--KEINRVLYS   54 (77)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH--HHHHHHHHH
Confidence            44688999999999999999999999999854  566666554

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=90.23  E-value=0.42  Score=33.09  Aligned_cols=43  Identities=9%  Similarity=0.094  Sum_probs=34.2

Q ss_pred             hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcH--HHHHHHHhh
Q psy12847         96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSA--RAVANACGQ  138 (188)
Q Consensus        96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~--RaVg~a~~~  138 (188)
                      +-++.|.+++..+|.|+.+|=.+||+++|.++..  |++-+-..+
T Consensus        12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk   56 (75)
T 1sfu_A           12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE   56 (75)
T ss_dssp             HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence            5678899999999999999999999999998742  444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1sfea1	84	a.4.2.1 (A:93-176) Ada DNA repair protein {Escheri	8e-31
d1qnta1	85	a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransf	3e-25
d1mgta1	81	a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransf	1e-21

>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]} Length = 84

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
domain: Ada DNA repair protein
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (263), Expect = 8e-31
 Identities = 41/83 (49%), Positives = 52/83 (62%)

Query: 94  GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRS 153
           GT FQ+ VW  L  IP G   SY  +A  IG+PK+ RAVA+AC  N + I+IPCHRV+R 
Sbjct: 1   GTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRG 60

Query: 154 DGSYGGYSSGKYIKETLIKIEQK 176
           DGS  GY  G   K  L++ E +
Sbjct: 61  DGSLSGYRWGVSRKAQLLRREAE 83

>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
domain: O6-alkylguanine-DNA alkyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (227), Expect = 3e-25
 Identities = 35/78 (44%), Positives = 48/78 (61%)

Query: 97  FQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGS 156
            ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIPCHRV+ S G+
Sbjct: 4   TRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGA 63

Query: 157 YGGYSSGKYIKETLIKIE 174
            G YS G  +KE L+  E
Sbjct: 64  VGNYSGGLAVKEWLLAHE 81

>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 81

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
domain: O6-alkylguanine-DNA alkyltransferase
species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

 Score = 81.9 bits (202), Expect = 1e-21
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 95  TDFQKLVWSELCK-IPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRS 153
           T F+K V+  L K +  GS+ +Y D+A+ +      RAV  A  +N  PI++PCHRV+  
Sbjct: 2   TPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSP--RAVGGAMKRNPYPIVVPCHRVVAH 59

Query: 154 DGSYGGYSSGKYIKETLIKIE 174
           DG  G YSSG   K+ L++IE
Sbjct: 60  DGI-GYYSSGIEEKKFLLEIE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1sfea1	84	Ada DNA repair protein {Escherichia coli [TaxId: 5	100.0
d1qnta1	85	O6-alkylguanine-DNA alkyltransferase {Human (Homo	100.0
d1mgta1	81	O6-alkylguanine-DNA alkyltransferase {Archaeon Pyr	100.0
d1sfea2	81	Ada DNA repair protein {Escherichia coli [TaxId: 5	99.35
d1qnta2	86	O6-alkylguanine-DNA alkyltransferase {Human (Homo	98.05
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	85.44
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	84.62
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	82.75
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	80.35

>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
domain: Ada DNA repair protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-40  Score=238.96  Aligned_cols=84  Identities=49%  Similarity=0.869  Sum_probs=82.7

Q ss_pred             CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHH
Q psy12847         94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKI  173 (188)
Q Consensus        94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~  173 (188)
                      ||+||++||++|++||+|+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|++|.+|...|++||++
T Consensus         1 GT~Fq~~V~~~l~~Ip~G~v~TYg~iA~~~g~~~a~RaVg~a~~~Np~~~~iPcHRVv~s~g~lggy~~G~~~K~~LL~~   80 (84)
T d1sfea1           1 GTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGSLSGYRWGVSRKAQLLRR   80 (84)
T ss_dssp             SCHHHHHHHHHHTTSCTTCCEEHHHHHHHTTCTTCHHHHHHHHHTCCBBTTBCGGGEECTTSCCTTCTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHcCCCCCeeeHHHHHHHhCCcccHHHHHHHHhcCCCCCcCCceeeeccCCCCcCCCCcHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccc
Q psy12847        174 EQKI  177 (188)
Q Consensus       174 E~~~  177 (188)
                      ||++
T Consensus        81 Egvn   84 (84)
T d1sfea1          81 EAEN   84 (84)
T ss_dssp             HSCC
T ss_pred             HccC
Confidence            9985

>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
domain: O6-alkylguanine-DNA alkyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-38  Score=226.17  Aligned_cols=83  Identities=43%  Similarity=0.735  Sum_probs=80.1

Q ss_pred             hhHHH-HHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHh
Q psy12847         96 DFQKL-VWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE  174 (188)
Q Consensus        96 ~f~~~-V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E  174 (188)
                      .||++ ||++|.+||+|+|+||++||+.+|.|+++||||+||++||++++|||||||+++|++++|++|...|++||++|
T Consensus         2 ~F~~~~vw~~l~~IP~G~v~TYg~iA~~~g~p~aaRaVg~a~~~Np~~~~iPcHRVv~s~G~l~gy~~G~~~K~~LL~~E   81 (85)
T d1qnta1           2 SFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHE   81 (85)
T ss_dssp             CHHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHHTTCSSBTTBCGGGEECTTSCCCCCTTCHHHHHHHHHHT
T ss_pred             chHHHHHHHHHhcCCCCCcccHHHHHHHcCCcchHHHHHHHHHhCCCCCCCcceeEecCCCCccCCCCCHHHHHHHHHHh
Confidence            58876 79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy12847        175 QKIV  178 (188)
Q Consensus       175 ~~~~  178 (188)
                      |+.+
T Consensus        82 Gv~~   85 (85)
T d1qnta1          82 GHRL   85 (85)
T ss_dssp             TCCC
T ss_pred             cCcC
Confidence            9864

>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
family: Methylated DNA-protein cysteine methyltransferase, C-terminal domain
domain: O6-alkylguanine-DNA alkyltransferase
species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

Probab=100.00  E-value=8.5e-37  Score=217.49  Aligned_cols=79  Identities=43%  Similarity=0.683  Sum_probs=75.7

Q ss_pred             ChhHHHHHHHhc-ccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHH
Q psy12847         95 TDFQKLVWSELC-KIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKI  173 (188)
Q Consensus        95 t~f~~~V~~~l~-~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~  173 (188)
                      ||||++||++|. +||||+|+||+|||+.+|.  ++||||+||++||++++|||||||++|| +++|++|.+.|++||++
T Consensus         2 T~Fq~~V~~~l~~~IP~G~v~TYg~iA~~~g~--~~RaVg~a~~~Np~~~~IPcHRVv~~~G-~gg~~~G~~~K~~lL~~   78 (81)
T d1mgta1           2 TPFEKKVYEWLTKNVKRGSVITYGDLAKALNT--SPRAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYSSGIEEKKFLLEI   78 (81)
T ss_dssp             CHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTS--CHHHHHHHHHTCSCTTTSCGGGEEBTTB-CCCCTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCeEeHHHHHHHcCC--cHHHHHHHHHhCCCcccccceEEEecCC-CcCCCCCHHHHHHHHHH
Confidence            899999999885 5999999999999999995  8999999999999999999999999998 89999999999999999


Q ss_pred             hcc
Q psy12847        174 EQK  176 (188)
Q Consensus       174 E~~  176 (188)
                      ||+
T Consensus        79 EGV   81 (81)
T d1mgta1          79 EGV   81 (81)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            996

>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Methylated DNA-protein cysteine methyltransferase domain
family: Methylated DNA-protein cysteine methyltransferase domain
domain: Ada DNA repair protein
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=5.4e-13  Score=92.49  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=57.1

Q ss_pred             eEEEEEEeccCccceEEEEEecccccc-cc-cccc---hhhhhhc-----ccCChhHHHHHHHHHHHhcCCCCCCccccc
Q psy12847         21 KMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLY---SHIEYIK-----MFESKQSRDIIDRLEAYIVNPKQNCLDIKF   90 (188)
Q Consensus        21 ~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~---~~~~~~~-----~~~~~~l~~~~~qL~~YF~G~~~~~F~lpl   90 (188)
                      .|.|++++||  ||.+.|+++++|||. .| ++..   ..+...+     .+++..++++.+||.+||+|++.. |++||
T Consensus         2 ~I~Y~~~~sp--lG~llvaat~~Glc~i~F~d~~~~~~~~l~~~~p~a~l~~~~~~l~~~~~ql~~yf~g~r~~-f~LPL   78 (81)
T d1sfea2           2 AVRYALADCE--LGRCLVAESERGICAILLGDDDATLISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTP-LTLPL   78 (81)
T ss_dssp             CCEEEEEEET--TEEEEEEECSSSEEEEEEESCHHHHHHHHHHHSTTCEECTTCHHHHHHHHHHHHHHHSSSCC-CCSCB
T ss_pred             EEEEEeccCC--ceeEEEEEcCCcEEEEEEecChHHHHHHHHHhhccceeecccchhHHHHHHHHHHHhCCCCC-CCCCc
Confidence            5789999999  999999999999999 99 5332   1222222     235678999999999999999999 99999


Q ss_pred             ccC
Q psy12847         91 KIE   93 (188)
Q Consensus        91 ~~~   93 (188)
                      |+.
T Consensus        79 D~r   81 (81)
T d1sfea2          79 DIR   81 (81)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            973

>d1qnta2 c.55.7.1 (A:6-91) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Methylated DNA-protein cysteine methyltransferase domain
family: Methylated DNA-protein cysteine methyltransferase domain
domain: O6-alkylguanine-DNA alkyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.7e-06  Score=60.18  Aligned_cols=75  Identities=16%  Similarity=0.074  Sum_probs=52.2

Q ss_pred             eEEEEEEeccCccceEEEEEecccccc-cc-cccch--h-----hhhhcccCChhHHHHHHHHHHHhcCCCCCCcccccc
Q psy12847         21 KMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS--H-----IEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFK   91 (188)
Q Consensus        21 ~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~--~-----~~~~~~~~~~~l~~~~~qL~~YF~G~~~~~F~lpl~   91 (188)
                      +|.|.+++||  +|.|.|...++||.. .+ +...+  +     .........+.+.++.+||++||...... -.+||-
T Consensus         1 ~m~~~~l~SP--lGkIeisgCE~GvH~I~l~~~~t~~~~~~e~~a~~~~~~~~epL~qC~~WL~aYF~~p~~~-~~LPlP   77 (86)
T d1qnta2           1 EMKRTTLDSP--LGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAI-EEFPVP   77 (86)
T ss_dssp             CCEEEEECCT--TSCEEEEEETTEEEEEEECCC-----CCCSSCCCCSSCCCSHHHHHHHHHHHHHHHCGGGG-GGSCCC
T ss_pred             CcceeeeeCC--ccceEEeecCccceEEEeccCCCCCcccccCCCCHHHhcCchhHHHHHHHHHHHccChhhc-cCCCCC
Confidence            4789999999  999999999999998 66 32221  1     01111123468999999999999998664 457765


Q ss_pred             cC-CChhH
Q psy12847         92 IE-GTDFQ   98 (188)
Q Consensus        92 ~~-gt~f~   98 (188)
                      .. ..-||
T Consensus        78 alHhp~~q   85 (86)
T d1qnta2          78 ALHHPVFQ   85 (86)
T ss_dssp             CBCCHHHH
T ss_pred             cccchhhc
Confidence            43 34455

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=85.44  E-value=0.36  Score=30.90  Aligned_cols=42  Identities=21%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             CChhHHHHHHHhcc--cCCCceeCHHHHHHHhCCCCcHHHHHHHH
Q psy12847         94 GTDFQKLVWSELCK--IPFGSLCSYADVARNIGRPKSARAVANAC  136 (188)
Q Consensus        94 gt~f~~~V~~~l~~--IP~G~~~TY~~lA~~~g~p~~~RaVg~a~  136 (188)
                      -|+-|++||+.+.+  .-.|..-||.|||+.+|. ++.-.|-..+
T Consensus         3 LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~-~S~stv~~~l   46 (71)
T d1jhfa1           3 LTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF-RSPNAAEEHL   46 (71)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTC-SSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCC-CCHHHHHHHH
Confidence            38899999999876  466888999999999996 2333343333

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=84.62  E-value=0.72  Score=29.85  Aligned_cols=41  Identities=10%  Similarity=0.124  Sum_probs=35.0

Q ss_pred             hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847         96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ  138 (188)
Q Consensus        96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~  138 (188)
                      +-++.|-+.+..+|.|+.+|=.+||+.+|.++  |-|-++|-+
T Consensus         7 ~i~~lvk~~l~~L~~~~~~tA~~LAk~Lg~~K--k~VNr~LY~   47 (70)
T d1sfua_           7 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINK--KKINQQLYK   47 (70)
T ss_dssp             HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHhCCCH--HHHHHHHHH
Confidence            45778999999999999999999999999865  777777643

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.75  E-value=0.35  Score=30.34  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             HHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHH
Q psy12847         98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANAC  136 (188)
Q Consensus        98 ~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~  136 (188)
                      +++|+..|..+-.|+++|=.+||.++|.|+  +-|-+++
T Consensus         1 Eq~vl~~l~~lg~~~~~tA~~LA~kl~vpK--k~iNr~L   37 (59)
T d2gxba1           1 EQRILKFLEELGEGKATTAHDLSGKLGTPK--KEINRVL   37 (59)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHTCCH--HHHHHHH
T ss_pred             ChHHHHHHHhcCCccchhHHHHHHHhCCcH--HHHHHHH
Confidence            578999999999999999999999999975  3444444

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.35  E-value=1.2  Score=28.54  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=33.0

Q ss_pred             ChhHHHHHHHhcccCCCceeCHHHHHHHh-CCCCcHHHHHHHH
Q psy12847         95 TDFQKLVWSELCKIPFGSLCSYADVARNI-GRPKSARAVANAC  136 (188)
Q Consensus        95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~-g~p~~~RaVg~a~  136 (188)
                      +|-|++|++.+..-|.=+-++..+|++++ |.|  ...|-.|+
T Consensus         5 s~~q~~V~~~i~s~~~~eGi~~~el~~~l~~~~--~~~i~~ai   45 (69)
T d1dpua_           5 TVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMS--VSSIKQAV   45 (69)
T ss_dssp             CHHHHHHHHHHHHCCCTTTEEHHHHHHHSTTSC--HHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCccCcCHHHHHHHccCCC--HHHHHHHH
Confidence            89999999999999977789999999998 554  44555554