Psyllid ID: psy12875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
ASILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS
Secondary Structure (PSIPRED)
cEEEEEEEcccccccccccEEEEEccccccccccccccccccEEEEHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccEEcccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccHHHHHHHcccccEEEEccEEEEccccccccccccEEEEEEEEccccEEEEEEEEccccEEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccEEEHHHHHHHHHcccEEEEEcccccHHHHHHHHHHccEEEEccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccccccccEEHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccHHHHcccHHHHHHHHccccHHHcccccccHHHcccccHHHHEEEEEEEEccccEEEEEEEEccccEEEEcccccHHHHccccccccccc
Coil and Loop (DISEMBL)
ASILLLLTYISTvtstdtpviGILAQEythipsyvkaypnyTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQIngvvipgggtgfdhpngyadaGRQILHLVDKineegvtfpVLGVCLGFELILQVsnndtdfrkscKVQQVNlnlkflpgakrsslfsqineegvtfpVLGVCLGFELILQVsnndtdfrkscKVQQVNlnlkflpgakrsslfsqvpsKYIKKfyqkplthnnhiwcITRQDMIKYGLTETWNILTLskykswefvstvehkeypivgiqfhpeknayewtesqhnphs
Flexible Loop (DISEMBL)
ASILLLLTYISTvtstdtpvIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNlkflpgakrsslfsqVPSKYIKKFyqkplthnnhIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS
Low Complexity Region (SEG)
ASILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS
Disordered region (IsUnstruct)
**ILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEW*********
Disordered Region (DISOPRED)
ASILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE*******
Disordered Region (DISEMBL)
ASILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYE**********
Disordered Region (DISPRO)
ASILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTES******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ASILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q54HL4	347	Gamma-glutamyl hydrolase	yes	N/A	0.795	0.706	0.299	7e-26
Q92820	318	Gamma-glutamyl hydrolase	yes	N/A	0.701	0.679	0.295	7e-24
Q54LN4	317	Gamma-glutamyl hydrolase	no	N/A	0.730	0.709	0.298	3e-23
Q62867	317	Gamma-glutamyl hydrolase	yes	N/A	0.730	0.709	0.298	5e-23
Q9Z0L8	317	Gamma-glutamyl hydrolase	yes	N/A	0.714	0.694	0.287	8e-23
A7YWG4	318	Gamma-glutamyl hydrolase	yes	N/A	0.733	0.710	0.3	1e-22
O65355	347	Gamma-glutamyl hydrolase	no	N/A	0.740	0.657	0.273	4e-19
P93164	342	Gamma-glutamyl hydrolase	no	N/A	0.746	0.672	0.25	5e-14
Q9UXW5	223	Phosphoribosylformylglyci	yes	N/A	0.331	0.457	0.320	0.0002
Q8PTB0	232	Phosphoribosylformylglyci	yes	N/A	0.233	0.310	0.384	0.0007

>sp|Q54HL4|GGHB_DICDI Gamma-glutamyl hydrolase B OS=Dictyostelium discoideum GN=gghB PE=3 SV=1

 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 130/314 (41%), Gaps = 69/314 (21%)

Query: 2   SILLLLTYISTV----TSTDTPVIGILAQEYTHIPSYVK-AYPNYTSYIAASYVKNIEAA 56
           S+ + L  IS +    T  +TPVIGIL Q +   PS +   Y +  +Y+ ASYVK +E+A
Sbjct: 6   SLFIYLYLISNLKLINTINNTPVIGILTQPF---PSSINIKYGD--NYLMASYVKYVESA 60

Query: 57  GARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV 116
           GARVVPI   QD E    I  QING+++PGG   F     Y      I   V  +N  G 
Sbjct: 61  GARVVPIFYNQDDESLTTIFKQINGILLPGGDVDFKTEIQYVKTLTLIWDYVLDVNINGD 120

Query: 117 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP 176
            FP+ G CLG E I+ +                         A+   + +  N E  + P
Sbjct: 121 YFPLWGTCLGLEEIVSLQ------------------------AESFDVLTDFNAENYSIP 156

Query: 177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQK 236
                                            L F   A  S +    P+  I      
Sbjct: 157 ---------------------------------LNFSNIALESKIMKNCPTNIINSLAND 183

Query: 237 PLTHNNHIWCITRQDMIKYG-LTETWNILTLSKYKSW-EFVSTVEHKEYPIVGIQFHPEK 294
           P+T NNH + I+         L + +N+L  +  KS  EF+S +E K+YPI  I +HPEK
Sbjct: 184 PITMNNHHFGISPNTFDNNSLLNQFFNVLATNNDKSGNEFISLIESKDYPIYAIIWHPEK 243

Query: 295 NAYEWTESQHNPHS 308
           + Y W       HS
Sbjct: 244 SPYSWYSKDATDHS 257

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 9

>sp|Q92820|GGH_HUMAN Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 127/284 (44%), Gaps = 68/284 (23%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQ 78
           P+IGIL Q+  +    +K Y  Y  YIAASYVK +E+AGARVVP+ +    + Y  +   
Sbjct: 34  PIIGILMQKCRN--KVMKNYGRY--YIAASYVKYLESAGARVVPVRLDLTEKDYEILFKS 89

Query: 79  INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDT 138
           ING++ PGG                                                   
Sbjct: 90  INGILFPGGSV------------------------------------------------- 100

Query: 139 DFRKS--CKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD 196
           D R+S   KV ++  NL             Q  ++G  FPV G CLGFE +  + + +  
Sbjct: 101 DLRRSDYAKVAKIFYNLSI-----------QSFDDGDYFPVWGTCLGFEELSLLISGECL 149

Query: 197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDM-IKY 255
              +  V  V + L F  G   S +F   P++ +     +PLT N H W ++ ++  +  
Sbjct: 150 LTATDTVD-VAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNE 208

Query: 256 GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEW 299
            L + +N+LT +     EF+ST+E  +YP+ G+Q+HPEK  YEW
Sbjct: 209 KLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEW 252

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|Q54LN4|GGHA_DICDI Gamma-glutamyl hydrolase A OS=Dictyostelium discoideum GN=gghA PE=3 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 131/295 (44%), Gaps = 70/295 (23%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQ 78
           P+IGIL Q     P+        + YIAASYVK IE+AGARVVPIL   D +   E++  
Sbjct: 30  PIIGILTQ-----PTDGDMTTFGSQYIAASYVKYIESAGARVVPILYDIDIKSLTELMGS 84

Query: 79  INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDT 138
           INGV  PGG                           GV F                NN T
Sbjct: 85  INGVFFPGG---------------------------GVDF----------------NNQT 101

Query: 139 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQI---NEEGVTFPVLGVCLGFELILQVSNNDT 195
            +  + +                 S++SQ+   N  G  FP+ G C+GF+ +  +S ++ 
Sbjct: 102 VYTDTIQ-----------------SIWSQVVEFNNNGDYFPLWGTCMGFQELALLSADNF 144

Query: 196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKY 255
           +   S   +   + L F   A  S LFS   S  ++    +P+T NNH + ++ Q   + 
Sbjct: 145 NLLSSYNSENYTVPLNFTSLAAGSRLFSLASSSIMQSLASEPITMNNHQFGLSPQTYQQT 204

Query: 256 GLTET-WNILTLSKYKSWE-FVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
               T +++L+ +  +    F+ST+E K YPI G Q+HPEK  +EW + +   HS
Sbjct: 205 SSINTFFDVLSTNVDRDGNTFISTIEAKNYPIYGTQWHPEKPIFEWWDQEVMNHS 259

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|Q62867|GGH_RAT Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=Ggh PE=1 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 128/298 (42%), Gaps = 73/298 (24%)

Query: 16  TDTPVIGILAQEYTHIPSYVKAYPNYTS----YIAASYVKNIEAAGARVVPILIGQDREY 71
           +  P+IGI+ QE          Y N T     YIAASYVK IE+AGARVVPI +  +   
Sbjct: 31  SKRPIIGIIMQE---------CYGNMTKLGRFYIAASYVKFIESAGARVVPIRLDLNDAQ 81

Query: 72  YAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELIL 131
           Y  +   INGV++PGGG    H +GY+   +       +  + G  FPV G CLG E + 
Sbjct: 82  YETLFRSINGVLLPGGGANLTH-SGYSRVAKIFFTKALESFDNGDYFPVWGTCLGLEELS 140

Query: 132 QVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVS 191
            + +ND +         V L L F   +K+S +F  + EE +              L   
Sbjct: 141 VLVSND-NLLTLTNTSSVKLPLNFTRDSKQSRMFRNLPEELLN------------SLASE 187

Query: 192 NNDTDFRK-SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQ 250
           N   +F K S  V+    N K                  +KKF+                
Sbjct: 188 NLTANFHKWSLSVKNFTENEK------------------LKKFF---------------- 213

Query: 251 DMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
                      NILT++     EF+S++E  +YPI  +Q+HPEK  +EW + +   H+
Sbjct: 214 -----------NILTVNTDGKTEFISSMEGYKYPIYAVQWHPEKAPFEWKKLRGISHA 260

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates. Exhibits either endo- or exopeptidase activity depending upon the tissue of origin. When secreted, it acts primarily as an endopeptidase.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|Q9Z0L8|GGH_MOUSE Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE=1 SV=2

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 124/285 (43%), Gaps = 65/285 (22%)

Query: 16  TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEI 75
           ++ P+IG++ QE     + +  Y     YIAASYVK IE+AGARVVPI        Y E+
Sbjct: 31  SERPIIGVVMQECFGKMAKLGNY-----YIAASYVKYIESAGARVVPIRPDLSDAEYEEL 85

Query: 76  LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN 135
              INGV++PGGG      +GY+   +       +  + G  FPV G CLGFE  L V  
Sbjct: 86  FRSINGVLLPGGGANLTD-SGYSRVAKIFFSKALESFDNGDHFPVWGTCLGFEE-LSVLV 143

Query: 136 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDT 195
           +  +   S   +   L L F  GA++S +F         FP                  T
Sbjct: 144 SGENLLTSTDTKSKKLPLNFTEGARKSRMFKH-------FP------------------T 178

Query: 196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIK- 254
           +   S  ++ +  N                                 H W ++ ++  + 
Sbjct: 179 ELLDSLALENLTANF--------------------------------HKWSLSVKNFTEN 206

Query: 255 YGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEW 299
             L + +NILT +     EF+S++E  +YP+  +Q+HPEK A+EW
Sbjct: 207 EKLKKFFNILTTNTDGKTEFISSMEGFKYPVYAVQWHPEKAAFEW 251

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates. Acts as endopeptidase. Lysosomal enzyme is activated by sulfhydryl compounds.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|A7YWG4|GGH_BOVIN Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 133/290 (45%), Gaps = 64/290 (22%)

Query: 20  VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQI 79
           +IGIL Q+  H  + ++A   Y  YIAASYVK +E+AGARVVP+ +    E Y ++   I
Sbjct: 35  IIGILMQK-CHNKN-MRALGKY--YIAASYVKFLESAGARVVPVRLDLKNEEYEKLFKSI 90

Query: 80  NGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD 139
           NGV+ PGG       +GYA   +   +L  K   EG  FPV G CLGFE ++ + + ++ 
Sbjct: 91  NGVLFPGGSVNLMR-SGYARVAKMFYNLSIKSFGEGDYFPVWGTCLGFEELIYLVSGESL 149

Query: 140 FRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK 199
              +  V  + L L F  G  +S +F         FP        +L+L ++        
Sbjct: 150 LTLTDTV-GIKLPLNFSRGTLQSRMFQN-------FPA-------DLLLSLA-------- 186

Query: 200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIK-YGLT 258
                                               +PLT + H W ++  +  K   L 
Sbjct: 187 -----------------------------------VEPLTAHFHKWSLSVMNFTKNEKLK 211

Query: 259 ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
             ++ILT +   + +F+ST+E   YPI G+Q+HPEK  YEW + +   H+
Sbjct: 212 AFFSILTTNTDGNIDFISTMEGYRYPIYGVQWHPEKAPYEWGQLRGISHA 261

Hydrolyzes the polyglutamate sidechains of pteroylpolyglutamates. Progressively removes gamma-glutamyl residues from pteroylpoly-gamma-glutamate to yield pteroyl-alpha-glutamate (folic acid) and free glutamate. May play an important role in the bioavailability of dietary pteroylpolyglutamates and in the metabolism of pteroylpolyglutamates and antifolates. Exhibits either endo- or exopeptidase activity depending upon the tissue of origin. When secreted, it acts primarily as an endopeptidase.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|O65355|GGH_ARATH Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 65/293 (22%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQ 78
           PVIGIL+         +    + +S IAASYVK  E+ GARV+P++  +  E   + L  
Sbjct: 54  PVIGILSHPGDGASGRLSNATDASS-IAASYVKLAESGGARVIPLIFNEPEEILFQKLEL 112

Query: 79  INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDT 138
           +NGV++ GG         +A  G                       L FE++ ++ N   
Sbjct: 113 VNGVILTGG---------WAKEG-----------------------LYFEIVKKIFN--- 137

Query: 139 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198
                          K L          + N+ G  FP+  +CLGFEL+  + + + D  
Sbjct: 138 ---------------KVL----------ERNDAGEHFPIYAICLGFELLTMIISQNRDIF 172

Query: 199 KSCKVQQVNLNLKFLPGAK-RSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMI-KYG 256
           +    +    +L+F+     + ++F + P + +KK     L   NH + I+ Q       
Sbjct: 173 EKMDARNSASSLQFVENVNIQGTIFQRFPPELLKKLGTDCLVMQNHRFGISPQSFEGNIA 232

Query: 257 LTETWNILTLSKYKSWE-FVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           L+  + I+T     + + +VSTV+  +YP+ G Q+HPEKNA+EW  S+  PHS
Sbjct: 233 LSNFFKIVTTCVDDNGKVYVSTVQSTKYPVTGFQWHPEKNAFEWGSSKI-PHS 284

Has endopeptidase activity against 4-amino-10-methylpteroyl penta-, tetra-, tri- and di-gamma-L-glutamate substrates and is responsible for the production of folic acid, pteglu from teroylpolyglutamates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|P93164|GGH_SOYBN Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 118/292 (40%), Gaps = 62/292 (21%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQ 78
           PVIGIL          + +     SYIAASYVK +E+ GARV+P++  +  E   + L  
Sbjct: 54  PVIGILTHPGDGASGRL-SNATGVSYIAASYVKFVESGGARVIPLIYNESPENLNKKLDL 112

Query: 79  INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDT 138
           +NGV+  G   G+     Y D    I     + N+ G  FPV+   LG  L++++ +  T
Sbjct: 113 VNGVLFTG---GWAVSGPYLDTLGNIFKKALERNDAGDHFPVIAFNLGGNLVIRIVSEQT 169

Query: 139 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR 198
           D  +      +  +L          L+++ N +G  F                       
Sbjct: 170 DILEPFTASSLPSSL---------VLWNEANAKGSLF----------------------- 197

Query: 199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCIT-RQDMIKYGL 257
                                    + PS  + +     L  +NH + I+ R+      L
Sbjct: 198 ------------------------QRFPSDLLTQLKTDCLVLHNHRYAISPRKLQYNTKL 233

Query: 258 TETWNILTLSKYKSWE-FVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           ++ + IL  S  +  + FVST   ++YP+    + PEKNA+EW  S   PH+
Sbjct: 234 SDFFEILATSGDRDGKTFVSTARGRKYPVTVNLWQPEKNAFEWATSLKAPHT 285

Glycine max (taxid: 3847)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 9

>sp|Q9UXW5|PURQ_PYRAB Phosphoribosylformylglycinamidine synthase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=purQ PE=3 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 68  DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQ-ILHLVDKINEEGVTFPVLGVCLG 126
           +R +Y E + + +GVV+PGG +  D+    A A RQ I+  V +  EEG   PVLG+C G
Sbjct: 30  ERVWYKESIREYDGVVLPGGFSYADYLRAGAIAARQRIMEEVREFAEEGR--PVLGICNG 87

Query: 127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEG 172
           F+++ +        R + K+ +      +L     ++ F+Q+ EEG
Sbjct: 88  FQVLTEAGLLPGALRPN-KIPRFICKWIYLKVNDTNTAFTQLYEEG 132

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 3

>sp|Q8PTB0|PURQ_METMA Phosphoribosylformylglycinamidine synthase 1 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=purQ PE=3 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 60  VVPILIGQDRE---YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQ-ILHLVDKINEEG 115
           V+  ++G D E   Y  E LT  +GVV+PGG +  D+    A A R  I+  + KI  EG
Sbjct: 20  VLKDVVGVDAETVWYKEESLTGFDGVVVPGGFSYGDYLRAGAIAARTPIMDSIKKIASEG 79

Query: 116 VTFPVLGVCLGFELILQV 133
              PVLG+C GF+++ + 
Sbjct: 80  K--PVLGICNGFQILTEA 95

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
340720772	322	PREDICTED: gamma-glutamyl hydrolase A-li	0.740	0.708	0.369	1e-44
242009081	320	gamma-glutamyl hydrolase precursor, puta	0.756	0.728	0.375	3e-44
350398057	328	PREDICTED: gamma-glutamyl hydrolase-like	0.759	0.713	0.372	4e-44
157127097	375	gamma-glutamyl hydrolase, putative [Aede	0.759	0.624	0.351	4e-44
157127101	354	gamma-glutamyl hydrolase, putative [Aede	0.762	0.663	0.350	4e-44
157127099	376	gamma-glutamyl hydrolase, putative [Aede	0.762	0.625	0.350	6e-44
322794376	342	hypothetical protein SINV_12245 [Solenop	0.834	0.751	0.366	2e-43
307184425	349	Gamma-glutamyl hydrolase [Camponotus flo	0.795	0.702	0.359	8e-43
326741704	314	gamma-glutamyl hydrolase-like precursor	0.798	0.783	0.343	9e-43
345497598	320	PREDICTED: gamma-glutamyl hydrolase A-li	0.769	0.740	0.359	6e-42

>gi|340720772|ref|XP_003398804.1| PREDICTED: gamma-glutamyl hydrolase A-like [Bombus terrestris]

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 149/295 (50%), Gaps = 67/295 (22%)

Query: 14  TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYA 73
           T  + P+IGILAQE          + +  SYIAASYVK IE AGARVVP+ IG+D  YY 
Sbjct: 27  TVNNRPIIGILAQE---------KFSSNKSYIAASYVKFIEGAGARVVPLWIGRDECYYE 77

Query: 74  EILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV 133
           +IL++INGV+ PGG   F    GYADAG +I  +  ++N  G  FP+LG+CLGFEL+  V
Sbjct: 78  DILSKINGVLWPGGSASFTSNKGYADAGYKIYKIAKRMNNNGDYFPILGICLGFELLTYV 137

Query: 134 SNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNN 193
                  R +C  Q + L L+F PG +RS +FS I                      S+N
Sbjct: 138 VAERVHHRTNCSAQSLPLELEFTPGYRRSRMFSNI----------------------SDN 175

Query: 194 DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMI 253
             D  ++ KV                                   T N H +C+T++ + 
Sbjct: 176 VEDILRTKKV-----------------------------------TSNQHQYCVTKRGLQ 200

Query: 254 KYGLTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPH 307
             G++  + IL+L+      EF+S++EH  YP  G+QFHPEKN YEW   +  PH
Sbjct: 201 CAGVSNKFRILSLNHDLDGVEFISSLEHITYPFYGLQFHPEKNLYEWIIGKKIPH 255

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009081|ref|XP_002425321.1| gamma-glutamyl hydrolase precursor, putative [Pediculus humanus corporis] gi|212509095|gb|EEB12583.1| gamma-glutamyl hydrolase precursor, putative [Pediculus humanus corporis]

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 149/293 (50%), Gaps = 60/293 (20%)

Query: 17  DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEIL 76
           + P+IG+L QE T +    + Y  + SY+AASYVK++E+AGARVVPI IG D  YY  IL
Sbjct: 30  NRPIIGVLTQEVTGLLE--QNYGKHCSYVAASYVKHLESAGARVVPIWIGADESYYRNIL 87

Query: 77  TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNN 136
           + INGV++PGG + F+  NGYA AG  I+ + D+ N+ G  FP+ G CLGFELI  +SNN
Sbjct: 88  SLINGVLLPGGASEFNVTNGYAAAGWYIMSIADEFNKNGDYFPIWGTCLGFELITYLSNN 147

Query: 137 DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD 196
           + D R+ CK     L +KF P    S LF  I  E V             IL   N+  +
Sbjct: 148 NNDLREDCKSSNEALPIKFKPDFGNSRLFRLIPSEIVE------------ILCKQNSTIN 195

Query: 197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG 256
           F + C                                             IT + + KY 
Sbjct: 196 FHQYC---------------------------------------------ITEKLLYKYD 210

Query: 257 LTETWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           L + W +L+ +  +   EFVS++EH  YP  G+QFHPEK AYEW    + PH+
Sbjct: 211 LFKIWKVLSTNFDECGLEFVSSIEHNIYPYFGVQFHPEKPAYEWNPKHNTPHT 263

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398057|ref|XP_003485074.1| PREDICTED: gamma-glutamyl hydrolase-like [Bombus impatiens]

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 154/301 (51%), Gaps = 67/301 (22%)

Query: 9   YISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD 68
           Y    T  + P+IGILAQE +  P + K      SYIAASYVK IE AGARVVPI IG+D
Sbjct: 28  YSENSTPNNRPIIGILAQEKS--PDHSK------SYIAASYVKFIEGAGARVVPIWIGRD 79

Query: 69  REYYAEILTQINGVVIPGGGTGFDHPN-GYADAGRQILHLVDKINEEGVTFPVLGVCLGF 127
             YY +IL++INGV+ PGG   F + N GYADAG +I  +  ++N+ G  FP+LG+CLGF
Sbjct: 80  ECYYEDILSKINGVLWPGGSASFANSNGGYADAGYKIYKIAKRMNDNGDYFPILGICLGF 139

Query: 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELI 187
           EL+  V       R  C+ Q + L L+F P  K   +FS I                   
Sbjct: 140 ELLTYVVAERFPHRTRCRAQTLPLQLEFTPDYKSGRMFSDI------------------- 180

Query: 188 LQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCI 247
              S+N  D  ++ KV                                   T N H+ C+
Sbjct: 181 ---SDNVEDILRTKKV-----------------------------------TSNQHLNCV 202

Query: 248 TRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNP 306
           T+  + + G+++ + IL+L+    + EF+S++EH  YP  G+QFHPEKN YEW   +  P
Sbjct: 203 TKSGLQRAGVSDKFQILSLNHDLNNLEFISSLEHITYPFYGLQFHPEKNLYEWKIGEKIP 262

Query: 307 H 307
           H
Sbjct: 263 H 263

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127097|ref|XP_001654802.1| gamma-glutamyl hydrolase, putative [Aedes aegypti] gi|108884507|gb|EAT48732.1| AAEL000271-PB, partial [Aedes aegypti]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 151/293 (51%), Gaps = 59/293 (20%)

Query: 17  DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEIL 76
           + PVIG+LAQE ++  +  K   +Y SYIAASYVK +E AGARVVP+ I + REYY  IL
Sbjct: 41  EEPVIGVLAQEMSYSLA-AKYEEDYESYIAASYVKFVEGAGARVVPVWINKPREYYENIL 99

Query: 77  TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNN 136
             +NG+++PGG T F+  NGYADAGR I  + ++IN +G  FP+ G CLGFEL+  ++ N
Sbjct: 100 PNLNGILLPGGATWFNQSNGYADAGRHIYDVAEEINVQGGYFPLWGTCLGFELLTYLAAN 159

Query: 137 DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD 196
             + R  C      L L F P  ++S +F++  ++ V             IL       +
Sbjct: 160 GDEHRAHCSSNNQALPLDFKPDFRKSRMFAETPDDIVE------------ILASEAVTAN 207

Query: 197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG 256
           F + C                                             +T Q++  YG
Sbjct: 208 FHQFC---------------------------------------------VTEQNLTAYG 222

Query: 257 LTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           L   W +++ +  +  +EF+ST+EHK  P  GIQFHPEKN YEW ++++  H+
Sbjct: 223 LDREWRVMSTNLDWNGFEFISTIEHKFLPFYGIQFHPEKNIYEWVQNKNISHT 275

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127101|ref|XP_001654804.1| gamma-glutamyl hydrolase, putative [Aedes aegypti] gi|108884509|gb|EAT48734.1| AAEL000271-PC [Aedes aegypti]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 151/294 (51%), Gaps = 59/294 (20%)

Query: 16  TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEI 75
            + PVIG+LAQE ++  +  K   +Y SYIAASYVK +E AGARVVP+ I + REYY  I
Sbjct: 40  NEEPVIGVLAQEMSYSLA-AKYEEDYESYIAASYVKFVEGAGARVVPVWINKPREYYENI 98

Query: 76  LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN 135
           L  +NG+++PGG T F+  NGYADAGR I  + ++IN +G  FP+ G CLGFEL+  ++ 
Sbjct: 99  LPNLNGILLPGGATWFNQSNGYADAGRHIYDVAEEINVQGGYFPLWGTCLGFELLTYLAA 158

Query: 136 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDT 195
           N  + R  C      L L F P  ++S +F++  ++ V             IL       
Sbjct: 159 NGDEHRAHCSSNNQALPLDFKPDFRKSRMFAETPDDIVE------------ILASEAVTA 206

Query: 196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKY 255
           +F + C                                             +T Q++  Y
Sbjct: 207 NFHQFC---------------------------------------------VTEQNLTAY 221

Query: 256 GLTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           GL   W +++ +  +  +EF+ST+EHK  P  GIQFHPEKN YEW ++++  H+
Sbjct: 222 GLDREWRVMSTNLDWNGFEFISTIEHKFLPFYGIQFHPEKNIYEWVQNKNISHT 275

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127099|ref|XP_001654803.1| gamma-glutamyl hydrolase, putative [Aedes aegypti] gi|108884508|gb|EAT48733.1| AAEL000271-PA [Aedes aegypti]

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 151/294 (51%), Gaps = 59/294 (20%)

Query: 16  TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEI 75
            + PVIG+LAQE ++  +  K   +Y SYIAASYVK +E AGARVVP+ I + REYY  I
Sbjct: 40  NEEPVIGVLAQEMSYSLA-AKYEEDYESYIAASYVKFVEGAGARVVPVWINKPREYYENI 98

Query: 76  LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN 135
           L  +NG+++PGG T F+  NGYADAGR I  + ++IN +G  FP+ G CLGFEL+  ++ 
Sbjct: 99  LPNLNGILLPGGATWFNQSNGYADAGRHIYDVAEEINVQGGYFPLWGTCLGFELLTYLAA 158

Query: 136 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDT 195
           N  + R  C      L L F P  ++S +F++  ++ V             IL       
Sbjct: 159 NGDEHRAHCSSNNQALPLDFKPDFRKSRMFAETPDDIVE------------ILASEAVTA 206

Query: 196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKY 255
           +F + C                                             +T Q++  Y
Sbjct: 207 NFHQFC---------------------------------------------VTEQNLTAY 221

Query: 256 GLTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           GL   W +++ +  +  +EF+ST+EHK  P  GIQFHPEKN YEW ++++  H+
Sbjct: 222 GLDREWRVMSTNLDWNGFEFISTIEHKFLPFYGIQFHPEKNIYEWVQNKNISHT 275

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794376|gb|EFZ17480.1| hypothetical protein SINV_12245 [Solenopsis invicta]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 159/311 (51%), Gaps = 54/311 (17%)

Query: 4   LLLLTYISTVTST-----DTPVIGILAQEYTHIPSYVKAYPN-YTSYIAASYVKNIEAAG 57
           +L   ++ TV  T     D P++GIL QE  +  +  K YPN Y SYIAASYVK +E AG
Sbjct: 7   ILFTGFVFTVVKTGGESNDRPIVGILTQEIDY--NLNKKYPNQYHSYIAASYVKFVEGAG 64

Query: 58  ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT 117
           AR VPI IG++  YY +IL ++NGV+ PGG T F    GYADAG  I  +  +INE G  
Sbjct: 65  ARPVPIWIGENDSYYEDILNKVNGVLWPGGSTYFFQREGYADAGTTIYRIAKEINERGEY 124

Query: 118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPV 177
           FP+ G+CLGFEL+  V+ N  + R SC      L L+F    + S+LF       +    
Sbjct: 125 FPIFGICLGFELLTYVAANRVEHRTSCSSSNQPLPLEFTDDFRESNLFKDAPPNVLR--- 181

Query: 178 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP 237
                    IL   N   ++   C                       V  K IK+ Y   
Sbjct: 182 ---------ILSEENVTANYHHFC-----------------------VTKKAIKRMYTIF 209

Query: 238 LTHNNHIWCITRQDMIKYGLTETWNILTLSK-YKSWEFVSTVEHKEYPIVGIQFHPEKNA 296
           L           QD+ +  L++ +++L+L++  K  EF+S++EH +YP  G+QFHPEKN 
Sbjct: 210 LL----------QDLHRVNLSDEFHVLSLNRDKKGLEFISSLEHTQYPFYGLQFHPEKNL 259

Query: 297 YEWTESQHNPH 307
           YEW   ++ PH
Sbjct: 260 YEWVTGKNIPH 270

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184425|gb|EFN70834.1| Gamma-glutamyl hydrolase [Camponotus floridanus]

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 155/309 (50%), Gaps = 64/309 (20%)

Query: 6   LLTYISTVTST-----DTPVIGILAQEYTHIPSYVKAYPN-YTSYIAASYVKNIEAAGAR 59
           L T+   V  T     D P+IGIL QE  +  +  K YP+ Y SYIAASYVK +E AGAR
Sbjct: 26  LFTFTFAVLKTGGELNDRPIIGILTQEIDY--NLNKEYPDQYHSYIAASYVKFVEGAGAR 83

Query: 60  VVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP 119
            +PI IG++  YY +IL +INGV+ PGG T F    GYADAG  I  +  KIN+ G  FP
Sbjct: 84  PIPIWIGRNDSYYEDILNKINGVLWPGGATYFFQKEGYADAGAAIYRIAKKINDRGEYFP 143

Query: 120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLG 179
           +LG+CLGFEL+  V+ N  + R +C  Q   L L+F    + ++LF Q+  + +      
Sbjct: 144 ILGICLGFELLTYVAANCVEHRTACSSQNQPLPLEFTHDFREANLFKQVPPDILK----- 198

Query: 180 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLT 239
                  IL   N   +F + C  ++ +                                
Sbjct: 199 -------ILDEENVTANFHQYCVTKEAS-------------------------------- 219

Query: 240 HNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYE 298
                      D+ +  L + + +L+L+   K  EF+ST+EHK YP  G+QFHPEKN YE
Sbjct: 220 -----------DLSRVQLIDEFRVLSLNHDKKGLEFISTLEHKRYPFYGVQFHPEKNLYE 268

Query: 299 WTESQHNPH 307
           W   ++ PH
Sbjct: 269 WVTGKNIPH 277

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326741704|ref|NP_001192053.1| gamma-glutamyl hydrolase-like precursor [Acyrthosiphon pisum] gi|239790522|dbj|BAH71816.1| ACYPI008145 [Acyrthosiphon pisum]

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 162/309 (52%), Gaps = 63/309 (20%)

Query: 3   ILLLLTYISTVT-STDTPVIGILAQE-YTHIPSYVKAYPNYTSYIAASYVKNIEAAGARV 60
           + L+L++++ +T   + PVIGIL QE Y    +++K Y N  SYIAASYVK IEA+G RV
Sbjct: 7   LTLILSFVTNLTICNERPVIGILTQEVYWSYLNHLKPYNN--SYIAASYVKAIEASGGRV 64

Query: 61  VPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120
           VP+   +  EYY +++ ++NG+++PGGG  F+   G + +  ++ H+  ++N+ G  FP+
Sbjct: 65  VPVFTNRTTEYYMDVVNKVNGILVPGGGCAFNISFGISQSTNEVFHIAKRVNDGGDHFPI 124

Query: 121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGV 180
           LG+CLGFEL+L  S    +    C    VNL L  +P  +  S+                
Sbjct: 125 LGICLGFELLLIASIGGKNPLTCCNSNNVNLPLNLIPTMEEKSML--------------- 169

Query: 181 CLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTH 240
                                         K +P   R+ L ++            P+T 
Sbjct: 170 -----------------------------FKTMPKDIRNILLTE------------PVTA 188

Query: 241 NNHIWCITRQDMIKYGLTETWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKNAYEW 299
           N+H  CIT+++     L   WN +TL+K + +  F+STVE K YP VG+QFHPEKNAYEW
Sbjct: 189 NHHKNCITKKNFTSMELDNFWNPITLNKDENNLTFISTVEAKNYPFVGLQFHPEKNAYEW 248

Query: 300 TESQHNPHS 308
              +++PHS
Sbjct: 249 --ERNDPHS 255

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497598|ref|XP_001601392.2| PREDICTED: gamma-glutamyl hydrolase A-like [Nasonia vitripennis]

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 151/298 (50%), Gaps = 61/298 (20%)

Query: 13  VTSTDTPVIGILAQEYTHIPSYVKAYPN-YTSYIAASYVKNIEAAGARVVPILIGQDREY 71
           V   + P+IGIL+QE ++  + V  YP  Y SYIAASYVK IE+AGARVVPI IGQ   Y
Sbjct: 21  VVVNERPIIGILSQEISYKLNEV--YPGMYDSYIAASYVKYIESAGARVVPIWIGQPVSY 78

Query: 72  YAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELIL 131
           Y +IL +INGV+ PGG T F+  NGYADAG  I  +  K N++G  FP+ G CLGFEL+ 
Sbjct: 79  YKDILGKINGVLFPGGSTYFNQSNGYADAGAVIYKIAKKFNKQGDFFPIWGTCLGFELLT 138

Query: 132 QVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVS 191
            V+ N  + R  C      L L+F    + S LF +   + +             IL+  
Sbjct: 139 YVAANKFEHRSDCSSHNQALPLEFTSDFRDSRLFGKAPSDVIQ------------ILRSE 186

Query: 192 NNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQD 251
           N   ++ + C                                             +T++ 
Sbjct: 187 NVTGNYHRYC---------------------------------------------VTQEG 201

Query: 252 MIKYGLTETWNILTLS-KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           + K  LT  + +++++  +   EF+ST+EH   P  G+QFHPEKNAYEW + ++ PHS
Sbjct: 202 LAKANLTNKFRVMSVNHDWNGQEFISTLEHVSMPFYGVQFHPEKNAYEWVKGKNIPHS 259

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
FB|FBgn0263607	373	l(3)72Dp "lethal (3) 72Dp" [Dr	0.503	0.415	0.452	1.7e-34
UNIPROTKB|F1NR48	321	GGH "Uncharacterized protein"	0.457	0.439	0.398	3.3e-24
ZFIN|ZDB-GENE-040426-2615	312	ggh "gamma-glutamyl hydrolase	0.529	0.522	0.356	1.3e-22
ZFIN|ZDB-GENE-050309-193	314	zgc:171566 "zgc:171566" [Danio	0.477	0.468	0.379	1.7e-20
DICTYBASE|DDB_G0286535	317	gghA "peptidase C26 family pro	0.519	0.504	0.369	1.9e-19
FB|FBgn0263608	345	l(3)72Dr "lethal (3) 72Dr" [Dr	0.451	0.402	0.321	4.1e-19
RGD|2682	317	Ggh "gamma-glutamyl hydrolase	0.461	0.447	0.375	1.7e-17
UNIPROTKB|A7YWG4	318	GGH "Gamma-glutamyl hydrolase"	0.457	0.443	0.387	1.8e-17
DICTYBASE|DDB_G0289365	347	gghB "peptidase C26 family pro	0.477	0.423	0.370	3.2e-17
MGI|MGI:1329035	317	Ggh "gamma-glutamyl hydrolase"	0.483	0.470	0.371	1e-16

FB|FBgn0263607 l(3)72Dp "lethal (3) 72Dp" [Drosophila melanogaster (taxid:7227)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 71/157 (45%), Positives = 109/157 (69%)

Query:    18 TPVIGILAQEYTHIPSYV-KAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEIL 76
             +P+IG+L QE  ++   + + + N TSYIAASYVK +E AGARVVPI IG++R YY +++
Sbjct:    25 SPIIGVLTQE-VYVDGLISRHFDNKTSYIAASYVKYLEGAGARVVPIWIGRNRSYYDDLM 83

Query:    77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNN 136
              +INGV++PGG T F+  NGYADAG  ++HL  ++N++GV  PV G CLG EL++    N
Sbjct:    84 RKINGVLLPGGATWFNQSNGYADAGEHLIHLAIELNDQGVFMPVWGTCLGMELLVYKLAN 143

Query:   137 DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGV 173
             +T+ R +C+   + + ++F    K+S LF+ I ++ V
Sbjct:   144 ETEHRINCEATGMAVPMEFKEDYKKSRLFASITDDVV 180

GO:0008242 "omega peptidase activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA

UNIPROTKB|F1NR48 GGH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/143 (39%), Positives = 84/143 (58%)

Query:   167 QINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVP 226
             + N++G  FPV G CLG EL+  +++ +     + K    +L L F   AKRS LF  +P
Sbjct:   123 EANDKGDYFPVWGTCLGHELLTYLTSGEI-LLVNTKTNGFSLPLNFTSAAKRSRLFKNLP 181

Query:   227 SKYIKKFYQKPLTHNNHIWCITRQDMIKYG-LTETWNILTLSKYKSWEFVSTVEHKEYPI 285
             +  +  F  +PLT N H+W I+ ++  K   L   +NILT +     EF+ST+E  +YPI
Sbjct:   182 NDLLHAFANEPLTSNFHVWSISMENFTKNEKLYNFYNILTTNIDNEVEFISTMEAYKYPI 241

Query:   286 VGIQFHPEKNAYEWTESQHNPHS 308
              G+Q+HPEKN++EW  S   PHS
Sbjct:   242 YGVQWHPEKNSFEWKNSSGIPHS 264

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2615 ggh "gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 61/171 (35%), Positives = 92/171 (53%)

Query:     1 ASILLLLTYISTVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARV 60
             A+ + +  +   + + + P+IG+LAQ+    P      P+  SYIAASYVK +E+AGARV
Sbjct:    13 ANAVSIYNFGPLIKTNERPIIGVLAQDVFD-PK-----PDRNSYIAASYVKFLESAGARV 66

Query:    61 VPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV 120
             VP++I +  + Y+ +   INGV+ PGGG   +  +GY+ A      L  + N  G  FPV
Sbjct:    67 VPVMINKSEDEYSRLFKSINGVLFPGGGVSLES-SGYSKAAGIFYRLALEANSNGDYFPV 125

Query:   121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEE 171
              G CLGFEL+  +++ +           + L L F    K S LF +  EE
Sbjct:   126 WGTCLGFELLTLLTSGEL-LLSHTNTSGIALPLDFTEDVKGSRLFKEFPEE 175

GO:0003824 "catalytic activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IDA

GO:0006760 "folic acid-containing compound metabolic process" evidence=IDA

ZFIN|ZDB-GENE-050309-193 zgc:171566 "zgc:171566" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 58/153 (37%), Positives = 84/153 (54%)

Query:    19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQ 78
             P+IGILAQE      + +     TSYIAASYVK++E+AGARVVPI I +  E Y  +   
Sbjct:    30 PIIGILAQENLEEDPHAQG----TSYIAASYVKHLESAGARVVPIRINRTEEEYETLFNA 85

Query:    79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDT 138
             ING+++PGG    +  + +  A R    L  K N+    FP+ G C GF+    +++N  
Sbjct:    86 INGLLLPGGNVDIE-TSQFTRAARIFYELALKANDASDYFPIWGTCQGFQQFTVLTSNK- 143

Query:   139 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEE 171
             +       + V L L F PGA+ S LF +  ++
Sbjct:   144 NLLTLTDTKAVALPLTFSPGAQNSRLFKKFPKD 176

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0286535 gghA "peptidase C26 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 62/168 (36%), Positives = 88/168 (52%)

Query:     2 SILLLLTYISTVTST---DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGA 58
             SI+L++  +     T   + P+IGIL Q     P+        + YIAASYVK IE+AGA
Sbjct:    10 SIILMVGIVKVNGQTKINNRPIIGILTQ-----PTDGDMTTFGSQYIAASYVKYIESAGA 64

Query:    59 RVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF 118
             RVVPIL   D +   E++  INGV  PGGG  F++   Y D  + I   V + N  G  F
Sbjct:    65 RVVPILYDIDIKSLTELMGSINGVFFPGGGVDFNNQTVYTDTIQSIWSQVVEFNNNGDYF 124

Query:   119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFS 166
             P+ G C+GF+ +  +S ++ +   S   +   + L F   A  S LFS
Sbjct:   125 PLWGTCMGFQELALLSADNFNLLSSYNSENYTVPLNFTSLAAGSRLFS 172

GO:0005615 "extracellular space" evidence=IEA;ISS;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA;ISS

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0263608 l(3)72Dr "lethal (3) 72Dr" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 4.1e-19, P = 4.1e-19
 Identities = 45/140 (32%), Positives = 77/140 (55%)

Query:   160 KRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRS 219
             +R+    ++++ G  FPV G CLGF+LIL  +    + R +C+  +  + +      ++S
Sbjct:   115 ERNMRAKKLDDRGAYFPVWGTCLGFQLILIHAAEAPNVRIACQPMREAMPVTLTDDYQQS 174

Query:   220 SLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSW-EFVSTV 278
              L   +P     +  + P   + H +CIT++ +  YGL + W+ L   K  S  EF++ V
Sbjct:   175 QLLGSLPKSVADEMEKHPFACHQHRYCITKESLESYGLAKDWHPLATQKDTSGLEFITIV 234

Query:   279 EHKEYPIVGIQFHPEKNAYE 298
             EH+ +PI G QFHPE+ A+E
Sbjct:   235 EHRRFPIFGCQFHPERAAFE 254

GO:0008242 "omega peptidase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA

RGD|2682 Ggh "gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase)" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 59/157 (37%), Positives = 80/157 (50%)

Query:    19 PVIGILAQEYTHIPSYVKAYPNYTS----YIAASYVKNIEAAGARVVPILIGQDREYYAE 74
             P+IGI+ QE          Y N T     YIAASYVK IE+AGARVVPI +  +   Y  
Sbjct:    34 PIIGIIMQE---------CYGNMTKLGRFYIAASYVKFIESAGARVVPIRLDLNDAQYET 84

Query:    75 ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVS 134
             +   INGV++PGGG    H +GY+   +       +  + G  FPV G CLG E +  + 
Sbjct:    85 LFRSINGVLLPGGGANLTH-SGYSRVAKIFFTKALESFDNGDYFPVWGTCLGLEELSVLV 143

Query:   135 NNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEE 171
             +ND +         V L L F   +K+S +F  + EE
Sbjct:   144 SND-NLLTLTNTSSVKLPLNFTRDSKQSRMFRNLPEE 179

GO:0005615 "extracellular space" evidence=IDA;TAS

GO:0005764 "lysosome" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0010043 "response to zinc ion" evidence=IDA

GO:0032868 "response to insulin stimulus" evidence=IDA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=ISO;ISS

GO:0042470 "melanosome" evidence=IEA

GO:0042493 "response to drug" evidence=IDA

GO:0045471 "response to ethanol" evidence=IDA

UNIPROTKB|A7YWG4 GGH "Gamma-glutamyl hydrolase" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 57/147 (38%), Positives = 82/147 (55%)

Query:    19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQ 78
             P+IGIL Q+  H  + ++A   Y  YIAASYVK +E+AGARVVP+ +    E Y ++   
Sbjct:    34 PIIGILMQK-CHNKN-MRALGKY--YIAASYVKFLESAGARVVPVRLDLKNEEYEKLFKS 89

Query:    79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDT 138
             INGV+ PGG       +GYA   +   +L  K   EG  FPV G CLGFE ++ + + ++
Sbjct:    90 INGVLFPGGSVNLMR-SGYARVAKMFYNLSIKSFGEGDYFPVWGTCLGFEELIYLVSGES 148

Query:   139 DFRKSCKVQQVNLNLKFLPGAKRSSLF 165
                 +  V  + L L F  G  +S +F
Sbjct:   149 LLTLTDTVG-IKLPLNFSRGTLQSRMF 174

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

DICTYBASE|DDB_G0289365 gghB "peptidase C26 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 221 (82.9 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 57/154 (37%), Positives = 78/154 (50%)

Query:     4 LLLLTYISTV-TSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVV 61
             L L++ +  + T  +TPVIGIL Q +   PS +     Y  +Y+ ASYVK +E+AGARVV
Sbjct:    11 LYLISNLKLINTINNTPVIGILTQPF---PSSINI--KYGDNYLMASYVKYVESAGARVV 65

Query:    62 PILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL 121
             PI   QD E    I  QING+++PGG   F     Y      I   V  +N  G  FP+ 
Sbjct:    66 PIFYNQDDESLTTIFKQINGILLPGGDVDFKTEIQYVKTLTLIWDYVLDVNINGDYFPLW 125

Query:   122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKF 155
             G CLG E I+ +     D       +  ++ L F
Sbjct:   126 GTCLGLEEIVSLQAESFDVLTDFNAENYSIPLNF 159

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA;ISS

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0005615 "extracellular space" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=IEA

MGI|MGI:1329035 Ggh "gamma-glutamyl hydrolase" [Mus musculus (taxid:10090)]

 Score = 216 (81.1 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 58/156 (37%), Positives = 79/156 (50%)

Query:    16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEI 75
             ++ P+IG++ QE       +    NY  YIAASYVK IE+AGARVVPI        Y E+
Sbjct:    31 SERPIIGVVMQECF---GKMAKLGNY--YIAASYVKYIESAGARVVPIRPDLSDAEYEEL 85

Query:    76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN 135
                INGV++PGGG      +GY+   +       +  + G  FPV G CLGFE  L V  
Sbjct:    86 FRSINGVLLPGGGANLTD-SGYSRVAKIFFSKALESFDNGDHFPVWGTCLGFEE-LSVLV 143

Query:   136 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEE 171
             +  +   S   +   L L F  GA++S +F     E
Sbjct:   144 SGENLLTSTDTKSKKLPLNFTEGARKSRMFKHFPTE 179

GO:0003824 "catalytic activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005764 "lysosome" evidence=TAS

GO:0005829 "cytosol" evidence=ISO

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0010043 "response to zinc ion" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=ISO

GO:0034722 "gamma-glutamyl-peptidase activity" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19.9	LOW CONFIDENCE prediction!
3rd Layer	3.4.19	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	308
cd01747	273	cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutam	1e-59
pfam07722	219	pfam07722, Peptidase_C26, Peptidase C26	5e-26
COG2071	243	COG2071, COG2071, Predicted glutamine amidotransfe	1e-09
cd01745	189	cd01745, GATase1_2, Subgroup of proteins having th	9e-09
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	4e-08
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	1e-07
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	3e-05
cd01740	238	cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotr	1e-04
PRK14607	534	PRK14607, PRK14607, bifunctional glutamine amidotr	2e-04
TIGR01855	196	TIGR01855, IMP_synth_hisH, imidazole glycerol phos	5e-04
PRK05670	189	PRK05670, PRK05670, anthranilate synthase componen	6e-04
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	8e-04
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	9e-04
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	0.001
PLN02335	222	PLN02335, PLN02335, anthranilate synthase	0.002

>gnl|CDD|153218 cd01747, GATase1_Glutamyl_Hydrolase, Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

 Score =  191 bits (487), Expect = 1e-59
 Identities = 92/290 (31%), Positives = 131/290 (45%), Gaps = 64/290 (22%)

Query: 21  IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQIN 80
           IGIL Q         K      SYIAASYVK +E+AGARVVPI I +  EYY ++     
Sbjct: 1   IGILTQP-VDGAGSNK---TGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKS-- 54

Query: 81  GVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDF 140
                                         IN  G+ FP   V +      +        
Sbjct: 55  ------------------------------IN--GILFPGGAVDIDTSGYART------- 75

Query: 141 RKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS 200
                                 +L  + N+ G  FPV G CLGFEL+  +++ +T   ++
Sbjct: 76  -----------------AKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEA 118

Query: 201 CKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-E 259
            +     L L F   A +S LF + P   +K    +PLT NNH + I+ ++  + GL  +
Sbjct: 119 TEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSD 178

Query: 260 TWNILTLSKYKSW-EFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
            +N+LT +   +  EF+STVE  +YPI G+Q+HPEKNA+EW +S   PHS
Sbjct: 179 FFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHS 228

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 273

>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26

 Score =  102 bits (256), Expect = 5e-26
 Identities = 62/289 (21%), Positives = 99/289 (34%), Gaps = 84/289 (29%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQ 78
           PVIGI A           A      YIAASYVK +E AG   V + I +D E    +L  
Sbjct: 1   PVIGITANLGEEGGHVFHAAGAS--YIAASYVKAVEGAGGLPVLLPILEDPEDLEALLDL 58

Query: 79  INGVVIPGGGTGFD---------HPNGYADAGRQI--LHLVDKINEEGVTFPVLGVCLGF 127
           ++G+++ GG +  D            GY D  R    L L+    E G   P+LG+C G 
Sbjct: 59  VDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERG--KPILGICRGM 116

Query: 128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELI 187
           +L                     LN                           V LG  L 
Sbjct: 117 QL---------------------LN---------------------------VALGGTLY 128

Query: 188 LQVSNNDTDFRKSCKVQQ---VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHI 244
             +  +  +     ++      +  +   PG    SL +++         ++ L ++ H 
Sbjct: 129 QDIPEHPGNSDHHHQLAVQYAPSHAVSLEPG----SLLARLLGA------EEILVNSLHH 178

Query: 245 WCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 293
             I R       L     +   +   + E + +       ++G+Q+HPE
Sbjct: 179 QAIKR-------LAPGLRVEATAPDGTIEAIESPNAPY-FVLGVQWHPE 219

These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219

>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 30/170 (17%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI--GQDREYYAEIL 76
           PVIGI A     I   V    N  SY+   YV  I  AG   +PIL+   +D E   + L
Sbjct: 4   PVIGITADLIQEI---VGFDGNPWSYLPYDYVDAIIKAG--GIPILLPALEDPEDARQYL 58

Query: 77  TQINGVVIPGG--------GTGFDHPNGYADAGRQI--LHLVDKINEEGVTFPVLGVCLG 126
             I+G+++ GG        G      +G  D  R    L L+    E G+  P+LG+C G
Sbjct: 59  DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGI--PILGICRG 116

Query: 127 FELI-----------LQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLF 165
            +L+           +       D R+   V   +  +   PG+K + + 
Sbjct: 117 LQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKIL 166

Length = 243

>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 19/121 (15%)

Query: 21  IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQIN 80
           IGI A+         +       Y+   YV  +  AG   V +    D E   + L  ++
Sbjct: 1   IGITARLR-----EEEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLD 55

Query: 81  GVVIPGGGTGFDHPNGYADAGRQI-----------LHLVDKINEEGVTFPVLGVCLGFEL 129
           G+++ GGG   D P    +   ++           L L+    E G   P+LG+C G +L
Sbjct: 56  GLLLTGGGD-VDPPLYGEEPHPELGPIDPERDAFELALLRAALERGK--PILGICRGMQL 112

Query: 130 I 130
           +
Sbjct: 113 L 113

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 189

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 37  AYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96
            +        AS +  +  AGA V  +            L   +G+++PGG    D    
Sbjct: 5   LFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAW 64

Query: 97  YADAGRQILHLVDKINEEGVTFPVLGVCLGFELI 130
                   L L+ +    G   PVLG+CLG +L+
Sbjct: 65  DEAL----LALLREAAAAGK--PVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 37  AYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG 96
            +P +     AS +  +  AGA V  +            L   +G+++PG   G   P+ 
Sbjct: 5   LFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPG---GPGTPDD 61

Query: 97  YADAGRQILHLVDKINEEGVTFPVLGVCLGFELIL 131
            A     +L L+ +    G   P+LG+CLG +L++
Sbjct: 62  LARDEA-LLALLREAAAAGK--PILGICLGAQLLV 93

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 21/119 (17%)

Query: 176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQ 235
           P+LG+CLG +L+           K       N  +          LF  +P+ +I    +
Sbjct: 72  PILGICLGHQLLALAFGGKVIKAKKEPHHGKNSPVG-----HDKGLFYGLPNVFI--VRR 124

Query: 236 KPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 294
                  H + +         L +   +   S+      ++ + HKE PI G+QFHPE 
Sbjct: 125 ------YHSYAVDPDT-----LPDGLEVTAASENG--GIMA-IRHKENPIFGVQFHPES 169

Length = 186

>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 42/163 (25%), Positives = 56/163 (34%), Gaps = 48/163 (29%)

Query: 53  IEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD---AGR------Q 103
            E AG      +   D     + L   +GVV+PGG   F     Y D   AG        
Sbjct: 19  FELAGFEAE-DVWHNDLLAGRKDLDDYDGVVLPGG---F----SYGDYLRAGAIAAASPL 70

Query: 104 ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSS 163
           ++  V +  E G    VLG+C GF                    Q+ + L  LPGA    
Sbjct: 71  LMEEVKEFAERGG--LVLGICNGF--------------------QILVELGLLPGAL--- 105

Query: 164 LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV 206
               I  +G+ F          L   V NND+ F K     +V
Sbjct: 106 ----IRNKGLKFICRWQNRFVTLR--VENNDSPFTKGYMEGEV 142

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 238

>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 30/121 (24%), Positives = 44/121 (36%), Gaps = 27/121 (22%)

Query: 176 PVLGVCLGFELILQVSNND---TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKK 232
           P+LGVCLG + I                 K   ++ N K         LF  +P+  +  
Sbjct: 75  PILGVCLGHQAIGYAFGGKIVHAKRILHGKTSPIDHNGK--------GLFRGIPNPTVAT 126

Query: 233 FYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHP 292
            Y        H   +         L E    L ++       +  + HKE+PI G+QFHP
Sbjct: 127 RY--------HSLVVEEA-----SLPEC---LEVTAKSDDGEIMGIRHKEHPIFGVQFHP 170

Query: 293 E 293
           E
Sbjct: 171 E 171

Length = 534

>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 44/136 (32%)

Query: 176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQ 235
           PVLG+CLG +L+         F +S +   V   L  + G              + K   
Sbjct: 73  PVLGICLGMQLL---------FERSEEGGGVPG-LGLIKGN-------------VVKLEA 109

Query: 236 KPLTHN--NHIWCITRQDMIKYGLTE---------------TWNILTLSKYKSWEFVSTV 278
           + + H   N +    ++  +  G+ E                  +L  + Y   +F + V
Sbjct: 110 RKVPHMGWNEVH-PVKESPLLNGIDEGAYFYFVHSYYAVCEEEAVLAYADYGE-KFPAAV 167

Query: 279 EHKEYPIVGIQFHPEK 294
           +     I G QFHPEK
Sbjct: 168 QKGN--IFGTQFHPEK 181

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6 [Amino acid biosynthesis, Histidine family]. Length = 196

>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 278 VEHKEYPIVGIQFHPE 293
           V HKE PI G+QFHPE
Sbjct: 155 VRHKELPIYGVQFHPE 170

Length = 189

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 27/123 (21%)

Query: 174 TFPVLGVCLGFELILQVSNNDTDFRKSC---KVQQVNLNLKFLPGAKRSSLFSQVPSKYI 230
             P+LGVCLG + I +               K  +++ +         S LF  +P  + 
Sbjct: 71  KVPILGVCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHD--------GSGLFKGLPQPFT 122

Query: 231 KKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQF 290
              Y        H   +    +             +        +  + H++ PI G+QF
Sbjct: 123 VGRY--------HSLVVDPDPLPDLLEVTASTEDGV--------IMALRHRDLPIYGVQF 166

Query: 291 HPE 293
           HPE
Sbjct: 167 HPE 169

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 11/16 (68%), Positives = 13/16 (81%)

Query: 278 VEHKEYPIVGIQFHPE 293
           V HK+ PI G+QFHPE
Sbjct: 158 VRHKKLPIYGVQFHPE 173

Length = 191

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 47  ASYVKNIEAAGAR--VVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI 104
            S+  N+  A     V   ++  D      +    +G++I  G      P      G  I
Sbjct: 7   DSFTYNLARALRELGVEVEVVPNDTPAEEILELNPDGIIISPG------PGSPGALGGAI 60

Query: 105 LHLVDKINEEGVTFPVLGVCLGFELILQVS 134
              + ++ E  +  P+LG+CLG +L+    
Sbjct: 61  E-AIKELRENKI--PILGICLGHQLLALAF 87

Length = 186

>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 34/143 (23%), Positives = 49/143 (34%), Gaps = 25/143 (17%)

Query: 157 PGAKRSSLFS-QINEE-GVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLP 214
           PG  + S  S Q   E G   P+ GVC+G + I +        R    V     +     
Sbjct: 72  PGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKI-VRSPFGVMHGKSSPVHYD 130

Query: 215 GAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSW-- 272
                 LFS +P+ +    Y        H   I +       L  T          +W  
Sbjct: 131 EKGEEGLFSGLPNPFTAGRY--------HSLVIEKDTFPSDELEVT----------AWTE 172

Query: 273 -EFVSTVEHKEYP-IVGIQFHPE 293
              +    H++Y  I G+QFHPE
Sbjct: 173 DGLIMAARHRKYKHIQGVQFHPE 195

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	100.0
KOG1559|consensus	340		100.0
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	100.0
COG2071	243	Predicted glutamine amidotransferases [General fun	100.0
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.97
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.97
PRK06895	190	putative anthranilate synthase component II; Provi	99.95
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.95
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.95
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.95
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.94
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.94
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.94
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.94
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.94
PRK05670	189	anthranilate synthase component II; Provisional	99.94
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.94
CHL00101	190	trpG anthranilate synthase component 2	99.94
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.94
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.94
PRK05637	208	anthranilate synthase component II; Provisional	99.93
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.92
PRK00758	184	GMP synthase subunit A; Validated	99.92
PLN02335	222	anthranilate synthase	99.92
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	99.92
PRK09065	237	glutamine amidotransferase; Provisional	99.92
PLN02347	536	GMP synthetase	99.92
PRK05665	240	amidotransferase; Provisional	99.91
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.91
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.91
PRK00074	511	guaA GMP synthase; Reviewed	99.9
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.9
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.9
PRK07567	242	glutamine amidotransferase; Provisional	99.9
PRK13566	720	anthranilate synthase; Provisional	99.89
PRK06490	239	glutamine amidotransferase; Provisional	99.89
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.89
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.89
PRK07053	234	glutamine amidotransferase; Provisional	99.88
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.88
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.88
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.88
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.88
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.88
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.88
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.88
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.88
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.87
PRK08250	235	glutamine amidotransferase; Provisional	99.87
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.87
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.86
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.86
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.86
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.85
PRK06186	229	hypothetical protein; Validated	99.85
KOG0026|consensus	223		99.85
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.85
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.84
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.84
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.84
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.83
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.83
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.83
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.83
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	99.81
PRK05380	533	pyrG CTP synthetase; Validated	99.8
PLN02327	557	CTP synthase	99.77
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.77
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.76
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	99.75
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	99.75
KOG3179|consensus	245		99.73
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.72
KOG1622|consensus	552		99.7
KOG1224|consensus	767		99.69
KOG2387|consensus	585		99.62
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.62
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.58
KOG0623|consensus	541		99.53
KOG0370|consensus	1435		99.52
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.45
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	99.43
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.41
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.31
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	99.29
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	99.28
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.17
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	99.11
PRK08007	187	para-aminobenzoate synthase component II; Provisio	98.88
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.84
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.84
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.82
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.81
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.78
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	98.78
PRK06774	191	para-aminobenzoate synthase component II; Provisio	98.76
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	98.75
KOG3210|consensus	226		98.74
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	98.73
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.71
CHL00101	190	trpG anthranilate synthase component 2	98.65
PRK08857	193	para-aminobenzoate synthase component II; Provisio	98.65
PLN02335	222	anthranilate synthase	98.63
PHA03366	1304	FGAM-synthase; Provisional	98.63
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	98.63
PRK06895	190	putative anthranilate synthase component II; Provi	98.62
PRK05670	189	anthranilate synthase component II; Provisional	98.6
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.51
PRK07765	214	para-aminobenzoate synthase component II; Provisio	98.45
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	98.4
PRK05637	208	anthranilate synthase component II; Provisional	98.39
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	98.37
PLN02889	918	oxo-acid-lyase/anthranilate synthase	98.37
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	98.36
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	98.35
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	98.31
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	98.28
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.27
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	98.27
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	98.24
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	98.24
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	98.23
PRK05665	240	amidotransferase; Provisional	98.22
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.22
PRK09065	237	glutamine amidotransferase; Provisional	98.19
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.16
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	98.16
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	98.08
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	98.08
PRK00784	488	cobyric acid synthase; Provisional	98.08
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	98.07
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	98.07
KOG1224|consensus	767		98.06
KOG0026|consensus	223		98.05
PRK07567	242	glutamine amidotransferase; Provisional	98.02
PRK13566	720	anthranilate synthase; Provisional	97.99
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	97.97
KOG3179|consensus	245		97.91
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.89
PLN02347	536	GMP synthetase	97.88
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	97.88
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	97.84
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.84
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.83
KOG0370|consensus	1435		97.83
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	97.81
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	97.78
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	97.7
PRK07053	234	glutamine amidotransferase; Provisional	97.67
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	97.65
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.58
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	97.49
TIGR00313	475	cobQ cobyric acid synthase CobQ.	97.47
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	97.47
PRK06490	239	glutamine amidotransferase; Provisional	97.47
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	97.46
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	97.42
PRK04155	287	chaperone protein HchA; Provisional	97.4
KOG1907|consensus	1320		97.39
PRK00074	511	guaA GMP synthase; Reviewed	97.36
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	97.34
COG2071	243	Predicted glutamine amidotransferases [General fun	97.3
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	97.29
KOG1622|consensus	552		97.27
PRK00758	184	GMP synthase subunit A; Validated	97.27
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	97.24
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	97.23
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	97.21
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.21
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	97.14
PRK05380	533	pyrG CTP synthetase; Validated	97.12
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	97.05
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	97.04
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	96.95
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	96.92
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	96.87
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	96.85
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	96.81
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	96.8
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	96.79
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	96.78
PLN02327	557	CTP synthase	96.74
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	96.69
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	96.66
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	96.65
PRK08250	235	glutamine amidotransferase; Provisional	96.64
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	96.58
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	96.56
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	96.46
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	96.44
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	96.4
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	96.4
PRK06186	229	hypothetical protein; Validated	96.38
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	96.33
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	96.29
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	96.25
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	96.24
COG3442	250	Predicted glutamine amidotransferase [General func	96.23
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	95.87
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	95.86
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	95.85
PRK11249	752	katE hydroperoxidase II; Provisional	95.72
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	95.69
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	95.67
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	95.67
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	95.52
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	95.46
PLN02617	538	imidazole glycerol phosphate synthase hisHF	95.46
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	95.42
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	95.42
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	95.41
PRK05368	302	homoserine O-succinyltransferase; Provisional	95.29
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	95.13
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	94.91
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	94.67
KOG2764|consensus	247		94.34
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	94.04
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	93.89
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	93.84
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	93.61
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	93.11
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	92.86
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	92.83
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	92.58
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	92.48
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	91.53
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	90.82
KOG2387|consensus	585		90.34
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	89.46
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	87.97
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	87.47
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	86.63
TIGR00313	475	cobQ cobyric acid synthase CobQ.	83.97
PRK00784	488	cobyric acid synthase; Provisional	83.84
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	83.62
COG0303	404	MoeA Molybdopterin biosynthesis enzyme [Coenzyme m	82.64
PRK03372	306	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	82.3
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	81.37

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=100.00  E-value=4.6e-39  Score=291.93  Aligned_cols=225  Identities=42%  Similarity=0.725  Sum_probs=177.6

Q ss_pred             EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH
Q psy12875         21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA  100 (308)
Q Consensus        21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~  100 (308)
                      |||++++....    .......+|++++|+++++++|+++++++++.+.+.+++.++.+|||++|||+.+++.. .|.+.
T Consensus         1 igil~~~~~~~----~~~~~~~~yi~~~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~-~~~~~   75 (273)
T cd01747           1 IGILTQPVDGA----GSNKTGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTS-GYART   75 (273)
T ss_pred             CeEEeeecCcc----ccccchhHHHHHHHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCcc-ccchH
Confidence            79999998651    11233568999999999999999999999886667788889999999999998777653 67777


Q ss_pred             HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc-ccccccccccccceeeecCCCCcchhhhHhhhcCCCCeee
Q psy12875        101 GRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD-FRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLG  179 (308)
Q Consensus       101 ~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~-~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilG  179 (308)
                      .+.+++.+.+..++|+.+||||||+|||+|+.+ +||+. .+..++.++...                            
T Consensus        76 ~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~-~gg~~~~~~~~~~~~~~~----------------------------  126 (273)
T cd01747          76 AKIIYNLALERNDAGDYFPVWGTCLGFELLTYL-TSGETLLLEATEATNSAL----------------------------  126 (273)
T ss_pred             HHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHH-hCCCccccCCCccccceE----------------------------
Confidence            788889988888877789999999999999999 88863 212111111101                            


Q ss_pred             eehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC-CC
Q psy12875        180 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG-LT  258 (308)
Q Consensus       180 iClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~-l~  258 (308)
                                               .+.+    .+...+++||++++.++...+.+...++++|++++++.++.... |.
T Consensus       127 -------------------------~l~~----t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~  177 (273)
T cd01747         127 -------------------------PLNF----TEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLS  177 (273)
T ss_pred             -------------------------EEEE----ccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccc
Confidence                                     1111    11124688999999988888888888999999999877764322 66


Q ss_pred             CCeEEEEEecC-CCceEEEEEEecCCCEEEEeecCCccCcccCCCCCCCCC
Q psy12875        259 ETWNILTLSKY-KSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS  308 (308)
Q Consensus       259 ~~~~via~s~~-~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~~~~~~~  308 (308)
                      +.+++++++.+ ++.+||++++++++|+||+|||||++.+||+....+|||
T Consensus       178 ~~~~vla~~~d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs  228 (273)
T cd01747         178 DFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHS  228 (273)
T ss_pred             cceEEEEEEecCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCC
Confidence            78899998754 567899999999999999999999999999998789996

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>KOG1559|consensus

Probab=100.00  E-value=6.7e-36  Score=256.59  Aligned_cols=231  Identities=37%  Similarity=0.598  Sum_probs=187.1

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      .||+|||+++++.. ++..-...-..+||.+||+++++..|++|+++.++..++.+...++.++||++|||.+  .. .+
T Consensus        51 ykPvIGIL~hpg~g-~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwa--k~-~d  126 (340)
T KOG1559|consen   51 YKPVIGILSHPGDG-ASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWA--KR-GD  126 (340)
T ss_pred             cCceeEEeccCCCC-ccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCccc--cc-cc
Confidence            58999999999876 1111112235689999999999999999999999998888888899999999999953  33 36


Q ss_pred             hhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCC
Q psy12875         97 YADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP  176 (308)
Q Consensus        97 ~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~P  176 (308)
                      |.+..+.++..+.+.+++|+.+||+|||+|+.+|.....-+..+...+|..+.+-.+.+-.                   
T Consensus       127 Y~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd~AssLqF~~-------------------  187 (340)
T KOG1559|consen  127 YFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVDVASSLQFVG-------------------  187 (340)
T ss_pred             HHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhcccccccceeeec-------------------
Confidence            8888888999999999999999999999999999877344555544444444332222210                   


Q ss_pred             eeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC
Q psy12875        177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG  256 (308)
Q Consensus       177 ilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~  256 (308)
                                       ++                    .-.+.+|+.+|.++...+..+..|..+|.+.+++++|..++
T Consensus       188 -----------------nv--------------------n~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~  230 (340)
T KOG1559|consen  188 -----------------NV--------------------NIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNP  230 (340)
T ss_pred             -----------------cc--------------------ceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCH
Confidence                             00                    12567999999999888999999999999999999998876


Q ss_pred             -CCCCeEEEEEecCC-CceEEEEEEecCCCEEEEeecCCccCcccCCCCCCCCC
Q psy12875        257 -LTETWNILTLSKYK-SWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS  308 (308)
Q Consensus       257 -l~~~~~via~s~~~-~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~~~~~~~  308 (308)
                       |.+.|+++.++.|+ ..+||..++.+.||++|+|||||+..+|||.+. +||+
T Consensus       231 ~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~-IpHs  283 (340)
T KOG1559|consen  231 ALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSD-IPHS  283 (340)
T ss_pred             HHHHHHhheeeecCCCceEEEEeecceeccceeeeecCccCccccccCC-CCCC
Confidence             88999999998555 688999999999999999999999999999977 9996

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=2.5e-35  Score=259.55  Aligned_cols=205  Identities=33%  Similarity=0.449  Sum_probs=129.9

Q ss_pred             CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch-
Q psy12875         19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY-   97 (308)
Q Consensus        19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~-   97 (308)
                      |+|||++++....  .........+|++++|+++++++|+.++++|+..+.+.++..++.+|||+||||.+|++|. .| 
T Consensus         1 PvIGI~~~~~~~~--~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~-~y~   77 (217)
T PF07722_consen    1 PVIGITAQPSESD--SSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPA-LYG   77 (217)
T ss_dssp             -EEEEE-EE------SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GG-GGT
T ss_pred             CEEEEeCCccccc--cCCcCchhHHHHhHHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHh-hcC
Confidence            8999999986421  0112233568999999999999999999999998888889999999999999999888664 33 


Q ss_pred             ---------hHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhH
Q psy12875         98 ---------ADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQI  168 (308)
Q Consensus        98 ---------~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i  168 (308)
                               .+..|+.+|+.....+.++++||||||+|||+|+++ +||+++++..+..+   ...+..           
T Consensus        78 ~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~-~GGtl~q~~~~~~~---~~~~~~-----------  142 (217)
T PF07722_consen   78 EEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVA-FGGTLYQDIPDQPG---FPDHRQ-----------  142 (217)
T ss_dssp             ---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHH-CCSSEESCCCCSS----EEECEE-----------
T ss_pred             CcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHH-hCCCceeecccCcC---cccccc-----------
Confidence                     334678888865555555779999999999999999 99999766532110   011100           


Q ss_pred             hhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeee
Q psy12875        169 NEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCIT  248 (308)
Q Consensus       169 ~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~  248 (308)
                                                  .......+.+..       .+++.|.+-+..       ....|+++|+++|+
T Consensus       143 ----------------------------~~~~~~~h~v~i-------~~~s~l~~~~~~-------~~~~vns~Hhq~v~  180 (217)
T PF07722_consen  143 ----------------------------HPQDFPSHPVRI-------VPGSLLAKILGS-------EEIEVNSFHHQAVK  180 (217)
T ss_dssp             -----------------------------S-TS--EEEEE-------ETTSTCCCTSHH-------CTEEEEEEECEEEC
T ss_pred             ----------------------------ccccccccccee-------ccCchHHHHhCc-------Ccceeecchhhhhh
Confidence                                        000001112222       134444443321       12347999999998


Q ss_pred             eccccccCCCCCeEEEEEecCCCceEEEEEEecC--CCEEEEeecCC
Q psy12875        249 RQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE--YPIVGIQFHPE  293 (308)
Q Consensus       249 ~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~--~p~~GvQFHPE  293 (308)
                      +       ++++|+++|++.|+.   |+||+..+  +|++|+|||||
T Consensus       181 ~-------l~~~l~v~A~s~Dg~---iEaie~~~~~~~~~GvQwHPE  217 (217)
T PF07722_consen  181 P-------LGEGLRVTARSPDGV---IEAIESPEHKYPILGVQWHPE  217 (217)
T ss_dssp             C-------HHCCEEEEEEECTSS---EEEEEECCESS-EEEESS-CC
T ss_pred             c-------cCCCceEEEEecCCc---EEEEEEcCCCCCEEEEEeCCC
Confidence            5       889999999999887   55777766  46999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=244.94  Aligned_cols=210  Identities=23%  Similarity=0.321  Sum_probs=153.4

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      ++||+|||+++......   ...+..-+|+...|++++..+|..++.+|...+.+.....++.+|||++||| .|++|. 
T Consensus         1 ~~kpvIGIt~~~~~~~~---~~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~-   75 (243)
T COG2071           1 MSKPVIGITADLIQEIV---GFDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPS-   75 (243)
T ss_pred             CCCCEEEEecchhcccc---ccCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHH-
Confidence            57999999998875311   1223345688899999999999999999976677778888999999999999 589885 


Q ss_pred             chhH----------HHHHHHHH--HHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcc
Q psy12875         96 GYAD----------AGRQILHL--VDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSS  163 (308)
Q Consensus        96 ~~~~----------~~~~~~e~--~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~  163 (308)
                      .|++          ..||.+|+  ++.++++  ++||||||||||+||++ +||+++++..+...   .+.++++.... 
T Consensus        76 ~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~--~iPILgICRG~QllNVa-~GGtL~q~i~~~~~---~~~H~~~~~~~-  148 (243)
T COG2071          76 LYGEEPSEKDGPYDPERDAFELALIRAALER--GIPILGICRGLQLLNVA-LGGTLYQDISEQPG---HIDHRQPNPVH-  148 (243)
T ss_pred             HcCCCCCcccCCCCccccHHHHHHHHHHHHc--CCCEEEEccchHHHHHH-hcCeeehhhhcccc---cccccCCCCcc-
Confidence            4543          34777766  5888885  49999999999999999 99999877643211   23333322211 


Q ss_pred             hhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChh-HHHhhccCCceeec
Q psy12875        164 LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSK-YIKKFYQKPLTHNN  242 (308)
Q Consensus       164 ~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~v~~~  242 (308)
                                                               ...+.+..   .+++.|.+-+... +        .|+++
T Consensus       149 -----------------------------------------~~~H~V~i---~~~s~La~i~g~~~~--------~VNS~  176 (243)
T COG2071         149 -----------------------------------------IESHEVHI---EPGSKLAKILGESEF--------MVNSF  176 (243)
T ss_pred             -----------------------------------------cceeEEEe---cCCccHHHhcCccce--------eecch
Confidence                                                     11222222   2455555544432 3        36999


Q ss_pred             cceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC-EEEEeecCCccCccc
Q psy12875        243 HIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEW  299 (308)
Q Consensus       243 H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p-~~GvQFHPE~~~~~~  299 (308)
                      |+++|+.       |+++|+|+|.++|+.   |+|+++++.. ++|||||||+...+.
T Consensus       177 HhQaIk~-------La~~L~V~A~a~DG~---VEAie~~~~~fvlGVQWHPE~~~~~~  224 (243)
T COG2071         177 HHQAIKK-------LAPGLVVEARAPDGT---VEAVEVKNDAFVLGVQWHPEYLVDTN  224 (243)
T ss_pred             HHHHHHH-------hCCCcEEEEECCCCc---EEEEEecCCceEEEEecChhhhccCC
Confidence            9999985       999999999999987   7799999744 579999999876544

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.97  E-value=2.7e-31  Score=239.11  Aligned_cols=214  Identities=20%  Similarity=0.346  Sum_probs=140.0

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHP   94 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~   94 (308)
                      |+||+|||+++....       .....+++.+.|+++++++|+.++.++.... .+.++..++.+||||++||+.|++|.
T Consensus         5 m~~P~Igi~~~~~~~-------~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~   77 (254)
T PRK11366          5 MNNPVIGVVMCRNRL-------KGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPH   77 (254)
T ss_pred             CCCCEEEEeCCCccc-------CcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHh
Confidence            468999999865322       1112457889999999999999999986543 44566677889999999998788652


Q ss_pred             Cchh--------HHHHH--HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcch
Q psy12875         95 NGYA--------DAGRQ--ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSL  164 (308)
Q Consensus        95 ~~~~--------~~~~~--~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~  164 (308)
                       .|+        ...|+  .+++++.++++  ++||||||+|||+|+++ +||+++++..+..   ....+...+..+  
T Consensus        78 -~yg~~~~~~~~~~~rD~~e~~li~~a~~~--~~PILGICrG~Qllnva-~GGtl~~~~~~~~---~~~~h~~~~~~~--  148 (254)
T PRK11366         78 -LYGENGDEPDADPGRDLLSMALINAALER--RIPIFAICRGLQELVVA-TGGSLHRKLCEQP---ELLEHREDPELP--  148 (254)
T ss_pred             -hcCCCCCCCCCChhHHHHHHHHHHHHHHC--CCCEEEECHhHHHHHHH-hCCeEeecccccc---cccccccCCccc--
Confidence             221        22334  34556777874  49999999999999999 9999976531100   001111100000  


Q ss_pred             hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCC--hhHHHhhccCCceeec
Q psy12875        165 FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVP--SKYIKKFYQKPLTHNN  242 (308)
Q Consensus       165 ~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~v~~~  242 (308)
                                                    ... ..+....+.+.       .++.+..-++  ..+        .|+++
T Consensus       149 ------------------------------~~~-~~~~~h~v~~~-------~~s~l~~i~~~~~~~--------~Vns~  182 (254)
T PRK11366        149 ------------------------------VEQ-QYAPSHEVQVE-------EGGLLSALLPECSNF--------WVNSL  182 (254)
T ss_pred             ------------------------------ccc-ccCCceEEEEC-------CCCcHHHhcCCCceE--------EeehH
Confidence                                          000 00011122211       1222211111  122        35899


Q ss_pred             cceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE-EEEeecCCccCcccCC
Q psy12875        243 HIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI-VGIQFHPEKNAYEWTE  301 (308)
Q Consensus       243 H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~-~GvQFHPE~~~~~~~~  301 (308)
                      |+++|..       +|++++++|+++|+.   |+|++++++++ +|||||||+..++.+.
T Consensus       183 H~q~V~~-------l~~gl~v~A~s~dg~---ieAie~~~~~~~~GVQwHPE~~~~~~~~  232 (254)
T PRK11366        183 HGQGAKV-------VSPRLRVEARSPDGL---VEAVSVINHPFALGVQWHPEWNSSEYAL  232 (254)
T ss_pred             HHHHHhh-------cccceEEEEEcCCCc---EEEEEeCCCCCEEEEEeCCCcCCCCCch
Confidence            9999874       999999999998886   77999999885 8999999999877653

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.97  E-value=1e-30  Score=220.30  Aligned_cols=127  Identities=26%  Similarity=0.422  Sum_probs=111.4

Q ss_pred             ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC---CcccceeeecccccCCCCCCcCccC
Q psy12875        152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK---SCKVQQVNLNLKFLPGAKRSSLFSQ  224 (308)
Q Consensus       152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~---~g~~~~~~~~~~~~~~~~~~~l~~~  224 (308)
                      .+.++|||++|..    .+.|+++.+++|+||||||||.|+++|||+|.+.+   ||++..+.+        .++.+|++
T Consensus        48 ~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h--------~g~~iF~g  119 (191)
T COG0512          48 AIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITH--------DGSGLFAG  119 (191)
T ss_pred             EEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeeeec--------CCcccccC
Confidence            4899999999983    55777777899999999999999999999999885   788775543        36789999


Q ss_pred             CChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875        225 VPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       225 ~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      +++++.+        .+|||..+++.+     +|+.++++|++++++  .|||++|+++|+||+|||||+..|++|.
T Consensus       120 lp~~f~v--------~RYHSLvv~~~~-----lP~~l~vtA~~~d~~--~IMai~h~~~pi~gvQFHPESilT~~G~  181 (191)
T COG0512         120 LPNPFTV--------TRYHSLVVDPET-----LPEELEVTAESEDGG--VIMAVRHKKLPIYGVQFHPESILTEYGH  181 (191)
T ss_pred             CCCCCEE--------EeeEEEEecCCC-----CCCceEEEEEeCCCC--EEEEEeeCCCCEEEEecCCccccccchH
Confidence            9998875        999999998755     899999999997764  5999999999999999999999999985

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.95  E-value=4.1e-27  Score=203.48  Aligned_cols=173  Identities=20%  Similarity=0.401  Sum_probs=122.7

Q ss_pred             CCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         38 YPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      .+++++|... ++++|++.|.++.++++....   ...++.+||||++||+..  +. .+.    .+.+++++ .+  .+
T Consensus         7 id~~dsf~~~-i~~~l~~~g~~~~v~~~~~~~---~~~l~~~d~iIi~gGp~~--~~-~~~----~~~~~i~~-~~--~~   72 (190)
T PRK06895          7 INNHDSFTFN-LVDLIRKLGVPMQVVNVEDLD---LDEVENFSHILISPGPDV--PR-AYP----QLFAMLER-YH--QH   72 (190)
T ss_pred             EeCCCchHHH-HHHHHHHcCCcEEEEECCccC---hhHhccCCEEEECCCCCC--hH-Hhh----HHHHHHHH-hc--CC
Confidence            3456788654 899999999999988864321   224678999999888732  21 122    34455554 44  34


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +|+||||+|||+|+.+ +||++.+..                                                  +   
T Consensus        73 ~PiLGIClG~Qlla~~-~Gg~V~~~~--------------------------------------------------~---   98 (190)
T PRK06895         73 KSILGVCLGHQTLCEF-FGGELYNLN--------------------------------------------------N---   98 (190)
T ss_pred             CCEEEEcHHHHHHHHH-hCCeEeecC--------------------------------------------------C---
Confidence            9999999999999999 999873210                                                  0   


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST  277 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a  277 (308)
                      ..++....+..       .+++++|++++.++.        ++++|++.+.+..     +|+++.++|.++++   ++++
T Consensus        99 ~~~g~~~~v~~-------~~~~~l~~~~~~~~~--------v~~~Hs~~v~~~~-----lp~~l~~~a~~~~~---~i~a  155 (190)
T PRK06895         99 VRHGQQRPLKV-------RSNSPLFDGLPEEFN--------IGLYHSWAVSEEN-----FPTPLEITAVCDEN---VVMA  155 (190)
T ss_pred             CccCceEEEEE-------CCCChhhhcCCCceE--------EEcchhheecccc-----cCCCeEEEEECCCC---cEEE
Confidence            00111111111       246789998887665        4899999997533     78889998887554   4889


Q ss_pred             EEecCCCEEEEeecCCccCcccCC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++|+||+|||||+..++||.
T Consensus       156 ~~~~~~pi~GvQFHPE~~~~~~g~  179 (190)
T PRK06895        156 MQHKTLPIYGVQFHPESYISEFGE  179 (190)
T ss_pred             EEECCCCEEEEEeCCCcCCCcchH
Confidence            999999999999999999999985

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.95  E-value=9.1e-27  Score=200.28  Aligned_cols=170  Identities=22%  Similarity=0.325  Sum_probs=120.6

Q ss_pred             CCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875         40 NYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP  119 (308)
Q Consensus        40 ~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P  119 (308)
                      .+++|. ..+.++|+++|.++.+++++.+.+... .+.++||||++||+.+...     .   +..+.++++.++  ++|
T Consensus         6 ~~~~~~-~~~~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~dgvil~gG~~~~~~-----~---~~~~~i~~~~~~--~~P   73 (184)
T cd01743           6 NYDSFT-YNLVQYLRELGAEVVVVRNDEITLEEL-ELLNPDAIVISPGPGHPED-----A---GISLEIIRALAG--KVP   73 (184)
T ss_pred             CCCccH-HHHHHHHHHcCCceEEEeCCCCCHHHH-hhcCCCEEEECCCCCCccc-----c---hhHHHHHHHHhc--CCC
Confidence            345674 578999999999999999876654332 3578999999887643221     1   133444444553  499


Q ss_pred             EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      +||||+|||+|+.+ +||++.+.....                                                     
T Consensus        74 vlGIC~G~Qlla~~-~Gg~v~~~~~~~-----------------------------------------------------   99 (184)
T cd01743          74 ILGVCLGHQAIAEA-FGGKVVRAPEPM-----------------------------------------------------   99 (184)
T ss_pred             EEEECHhHHHHHHH-hCCEEEeCCCCC-----------------------------------------------------
Confidence            99999999999999 999874321100                                                     


Q ss_pred             CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC--eEEEEEecCCCceEEEE
Q psy12875        200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET--WNILTLSKYKSWEFVST  277 (308)
Q Consensus       200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~--~~via~s~~~~~~~v~a  277 (308)
                      ++....+..        .++++|++++..+.        ++++|++.+..       ++.+  ++++|+++++.   |+|
T Consensus       100 ~g~~~~v~~--------~~~~~~~~~~~~~~--------~~~~H~~~v~~-------~~~~~~~~~la~~~~~~---v~a  153 (184)
T cd01743         100 HGKTSEIHH--------DGSGLFKGLPQPFT--------VGRYHSLVVDP-------DPLPDLLEVTASTEDGV---IMA  153 (184)
T ss_pred             cCceeEEEE--------CCCccccCCCCCcE--------EEeCcEEEEec-------CCCCceEEEEEeCCCCe---EEE
Confidence            000011111        24567777776554        49999999975       4555  99999988774   889


Q ss_pred             EEecCCCEEEEeecCCccCcccCC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++|+||+|||||+..++||.
T Consensus       154 ~~~~~~~i~gvQfHPE~~~~~~g~  177 (184)
T cd01743         154 LRHRDLPIYGVQFHPESILTEYGL  177 (184)
T ss_pred             EEeCCCCEEEEeeCCCcCCCcchH
Confidence            999999999999999999999986

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.95  E-value=6.1e-27  Score=201.83  Aligned_cols=172  Identities=19%  Similarity=0.289  Sum_probs=120.9

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      +++|||. .++++.|++.|+.+.+++.+. +.+++.  ..++||||++||+.+...   . .   ...+.++. .+  .+
T Consensus         6 dn~Dsft-~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iils~GPg~p~~---~-~---~~~~~~~~-~~--~~   72 (187)
T PRK08007          6 DNYDSFT-WNLYQYFCELGADVLVKRNDALTLADID--ALKPQKIVISPGPCTPDE---A-G---ISLDVIRH-YA--GR   72 (187)
T ss_pred             ECCCccH-HHHHHHHHHCCCcEEEEeCCCCCHHHHH--hcCCCEEEEcCCCCChHH---C-C---ccHHHHHH-hc--CC
Confidence            5678886 478999999999999998764 223222  237899999888743221   1 1   12233333 33  34


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +|+||||+|||+|+.+ +||++.+....                                                    
T Consensus        73 ~PiLGIClG~Q~la~a-~Gg~v~~~~~~----------------------------------------------------   99 (187)
T PRK08007         73 LPILGVCLGHQAMAQA-FGGKVVRAAKV----------------------------------------------------   99 (187)
T ss_pred             CCEEEECHHHHHHHHH-cCCEEEeCCCc----------------------------------------------------
Confidence            8999999999999999 99987532110                                                    


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST  277 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a  277 (308)
                       .+|....+.+        ..+.+|++++..+.        ++++|++.|++..     +|++++++|+++++.   ++|
T Consensus       100 -~~g~~~~v~~--------~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~v~a~~~~~~---i~a  154 (187)
T PRK08007        100 -MHGKTSPITH--------NGEGVFRGLANPLT--------VTRYHSLVVEPDS-----LPACFEVTAWSETRE---IMG  154 (187)
T ss_pred             -ccCCceEEEE--------CCCCcccCCCCCcE--------EEEcchhEEccCC-----CCCCeEEEEEeCCCc---EEE
Confidence             0111112221        24457887766554        5999999996433     899999999998876   889


Q ss_pred             EEecCCCEEEEeecCCccCcccCC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++|+||+|||||+..+++|.
T Consensus       155 ~~~~~~~i~GvQfHPE~~~t~~G~  178 (187)
T PRK08007        155 IRHRQWDLEGVQFHPESILSEQGH  178 (187)
T ss_pred             EEeCCCCEEEEEeCCcccCCcchH
Confidence            999999999999999999888774

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.95  E-value=1.2e-26  Score=200.09  Aligned_cols=173  Identities=20%  Similarity=0.274  Sum_probs=120.3

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      +++|||. .+++++|++.|+.+.+++.+. +.+++..  .++||||++||+.+...   ..    ...+.++++ +  .+
T Consensus         6 d~~dsft-~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~---~~----~~~~~i~~~-~--~~   72 (188)
T TIGR00566         6 DNYDSFT-YNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNE---AG----ISLEAIRHF-A--GK   72 (188)
T ss_pred             ECCcCHH-HHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhh---cc----hhHHHHHHh-c--cC
Confidence            4577885 578999999999999998654 3333322  25899999998743221   11    124444544 3  35


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +||||||+|||+|+.+ +||++.+...                                                     
T Consensus        73 ~PvLGIC~G~Qll~~~-~GG~v~~~~~-----------------------------------------------------   98 (188)
T TIGR00566        73 LPILGVCLGHQAMGQA-FGGDVVRANT-----------------------------------------------------   98 (188)
T ss_pred             CCEEEECHHHHHHHHH-cCCEEeeCCC-----------------------------------------------------
Confidence            9999999999999999 9998742110                                                     


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST  277 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a  277 (308)
                      ..+|....+.+        ..+.++.+++.++.        ++++|++.|.+..     +|++++++|++++++  .++|
T Consensus        99 ~~~g~~~~v~~--------~~~~~~~~l~~~~~--------v~~~H~~~v~~~~-----l~~~~~v~a~s~~~~--~v~a  155 (188)
T TIGR00566        99 VMHGKTSEIEH--------NGAGIFRGLFNPLT--------ATRYHSLVVEPET-----LPTCFPVTAWEEENI--EIMA  155 (188)
T ss_pred             ccccceEEEEE--------CCCccccCCCCCcE--------EEEcccceEeccc-----CCCceEEEEEcCCCC--EEEE
Confidence            00121222221        23446666655443        4899999996433     889999999987654  4899


Q ss_pred             EEecCCCEEEEeecCCccCcccCC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++|+||+|||||+..++.|.
T Consensus       156 ~~~~~~~i~gvQfHPE~~~t~~G~  179 (188)
T TIGR00566       156 IRHRDLPLEGVQFHPESILSEQGH  179 (188)
T ss_pred             EEeCCCCEEEEEeCCCccCCcccH
Confidence            999999999999999999998875

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.94  E-value=1.4e-26  Score=200.53  Aligned_cols=175  Identities=22%  Similarity=0.304  Sum_probs=121.3

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      +++|||. .+++++|++.|..+.+++++. +.+.+.  ..++|++++.||+.+...     .  ....+.++. .+  .+
T Consensus         6 d~~dsft-~~~~~~l~~~g~~~~~~~~~~~~~~~~~--~~~~~~iilsgGp~~~~~-----~--~~~~~~i~~-~~--~~   72 (193)
T PRK08857          6 DNYDSFT-YNLYQYFCELGAQVKVVRNDEIDIDGIE--ALNPTHLVISPGPCTPNE-----A--GISLQAIEH-FA--GK   72 (193)
T ss_pred             ECCCCcH-HHHHHHHHHCCCcEEEEECCCCCHHHHh--hCCCCEEEEeCCCCChHH-----C--cchHHHHHH-hc--CC
Confidence            4567885 478999999999999999763 322221  235899999998743321     1  112233333 34  35


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +|+||||+|||+|+.+ +||++.+...        .                                            
T Consensus        73 ~PiLGIClG~Qlia~a-~Gg~v~~~~~--------~--------------------------------------------   99 (193)
T PRK08857         73 LPILGVCLGHQAIAQV-FGGQVVRARQ--------V--------------------------------------------   99 (193)
T ss_pred             CCEEEEcHHHHHHHHH-hCCEEEeCCC--------c--------------------------------------------
Confidence            9999999999999999 9998743110        0                                            


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEec--CCCceEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSK--YKSWEFV  275 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~--~~~~~~v  275 (308)
                       .+|....+..        .++++|.+++..+.        ++++|++++....     +|++++++|+++  ++..+.|
T Consensus       100 -~~G~~~~~~~--------~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~v~a~s~~~~~~~~~i  157 (193)
T PRK08857        100 -MHGKTSPIRH--------TGRSVFKGLNNPLT--------VTRYHSLVVKNDT-----LPECFELTAWTELEDGSMDEI  157 (193)
T ss_pred             -eeCceEEEEE--------CCCcccccCCCccE--------EEEccEEEEEcCC-----CCCCeEEEEEecCcCCCcceE
Confidence             0111111111        24457887766554        4999999996432     899999999986  5444569


Q ss_pred             EEEEecCCCEEEEeecCCccCcccCC
Q psy12875        276 STVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       276 ~ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++++|+||+|||||+..++||.
T Consensus       158 ~~~~~~~~pi~gvQfHPE~~~t~~g~  183 (193)
T PRK08857        158 MGFQHKTLPIEAVQFHPESIKTEQGH  183 (193)
T ss_pred             EEEEeCCCCEEEEeeCCCcCCCcchH
Confidence            99999999999999999999999975

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.94  E-value=2.1e-26  Score=202.41  Aligned_cols=172  Identities=23%  Similarity=0.318  Sum_probs=121.9

Q ss_pred             CccchHHHHHHHHHHcCCeEEEEEcCCCh-hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875         41 YTSYIAASYVKNIEAAGARVVPILIGQDR-EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP  119 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P  119 (308)
                      +++| ...+.++|++.|.++.+++++.+. ......++++||||++||+.+  +.  .   .+...++++++.+.  ++|
T Consensus         9 ~~~~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~--~~--~---~~~~~~~i~~~~~~--~~P   78 (214)
T PRK07765          9 YDSF-VFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGT--PE--R---AGASIDMVRACAAA--GTP   78 (214)
T ss_pred             CCcH-HHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCC--hh--h---cchHHHHHHHHHhC--CCC
Confidence            3444 347899999999999999987532 223334678999999999742  31  1   12345667777774  499


Q ss_pred             EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      |||||+|||+|+.+ +||++.+.....                                                     
T Consensus        79 iLGIC~G~Qlla~a-~GG~v~~~~~~~-----------------------------------------------------  104 (214)
T PRK07765         79 LLGVCLGHQAIGVA-FGATVDRAPELL-----------------------------------------------------  104 (214)
T ss_pred             EEEEccCHHHHHHH-hCCEEeeCCCCc-----------------------------------------------------
Confidence            99999999999999 999885321100                                                     


Q ss_pred             CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875        200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE  279 (308)
Q Consensus       200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~  279 (308)
                      +|....+.+        ..+.+|.+++..+.        ++++|++.+.+.+     +|++++++|+++++.   ++|++
T Consensus       105 ~g~~~~v~~--------~~~~~~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~vla~s~~~~---vqa~~  160 (214)
T PRK07765        105 HGKTSSVHH--------TGVGVLAGLPDPFT--------ATRYHSLTILPET-----LPAELEVTARTDSGV---IMAVR  160 (214)
T ss_pred             cCceeEEEE--------CCCccccCCCCccE--------EEecchheEeccc-----CCCceEEEEEcCCCc---EEEEE
Confidence            011111111        13336777666554        4899999997433     899999999998876   77999


Q ss_pred             ecCCCEEEEeecCCccCcccC
Q psy12875        280 HKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       280 ~~~~p~~GvQFHPE~~~~~~~  300 (308)
                      ++++++||+|||||++.++.|
T Consensus       161 ~~~~~i~gvQfHPE~~~t~~g  181 (214)
T PRK07765        161 HRELPIHGVQFHPESVLTEGG  181 (214)
T ss_pred             eCCCCEEEEeeCCCcccCcch
Confidence            999889999999999877644

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.94  E-value=2.4e-26  Score=199.21  Aligned_cols=172  Identities=20%  Similarity=0.317  Sum_probs=120.2

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      +++|+|. .+++++|++.|.++.+++.+.. .+++.  ..++||||+.||+.+...   ..    ...+.++. .+  .+
T Consensus         6 dn~dsft-~nl~~~l~~~g~~v~v~~~~~~~~~~~~--~~~~d~iIlsgGP~~p~~---~~----~~~~~i~~-~~--~~   72 (195)
T PRK07649          6 DNYDSFT-FNLVQFLGELGQELVVKRNDEVTISDIE--NMKPDFLMISPGPCSPNE---AG----ISMEVIRY-FA--GK   72 (195)
T ss_pred             eCCCccH-HHHHHHHHHCCCcEEEEeCCCCCHHHHh--hCCCCEEEECCCCCChHh---CC----CchHHHHH-hc--CC
Confidence            4577886 4789999999999999987643 22222  237899999999743322   11    12222332 23  34


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +|+||||+|||+|+.+ +||++.+...                                                     
T Consensus        73 ~PvLGIClG~Qlla~~-lGg~V~~~~~-----------------------------------------------------   98 (195)
T PRK07649         73 IPIFGVCLGHQSIAQV-FGGEVVRAER-----------------------------------------------------   98 (195)
T ss_pred             CCEEEEcHHHHHHHHH-cCCEEeeCCC-----------------------------------------------------
Confidence            8999999999999999 9998743210                                                     


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST  277 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a  277 (308)
                      ..+|....+.        ..++++|++++..+.        ++++|++.+....     +|++++++|+++++.   ++|
T Consensus        99 ~~~G~~~~i~--------~~~~~lf~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~~~a~s~~~~---v~a  154 (195)
T PRK07649         99 LMHGKTSLMH--------HDGKTIFSDIPNPFT--------ATRYHSLIVKKET-----LPDCLEVTSWTEEGE---IMA  154 (195)
T ss_pred             cccCCeEEEE--------ECCChhhcCCCCCCE--------EEEechheEeccc-----CCCCeEEEEEcCCCc---EEE
Confidence            0011111111        124568988877665        4999999986432     899999999998876   889


Q ss_pred             EEecCCCEEEEeecCCccCcccCC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++|+||+|||||+..++.|.
T Consensus       155 ~~~~~~~i~gvQFHPE~~~t~~g~  178 (195)
T PRK07649        155 IRHKTLPIEGVQFHPESIMTSHGK  178 (195)
T ss_pred             EEECCCCEEEEEECCCCCCCccHH
Confidence            999999999999999999887664

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=2.2e-26  Score=195.05  Aligned_cols=175  Identities=26%  Similarity=0.451  Sum_probs=122.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH-HHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG-RQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~-~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      +|..++|+++|+++++.   .+.+    .+.++|+||+||-++.- +  .+.... +.+.+.+++..+.+  +|+||||+
T Consensus        15 ~Sv~~Aler~G~~~~vs---~d~~----~i~~AD~liLPGVGaf~-~--am~~L~~~gl~~~i~~~~~~~--kP~LGICl   82 (204)
T COG0118          15 RSVKKALERLGAEVVVS---RDPE----EILKADKLILPGVGAFG-A--AMANLRERGLIEAIKEAVESG--KPFLGICL   82 (204)
T ss_pred             HHHHHHHHHcCCeeEEe---cCHH----HHhhCCEEEecCCCCHH-H--HHHHHHhcchHHHHHHHHhcC--CCEEEEeH
Confidence            47789999999988744   3443    46789999999988411 1  122222 25677788888754  99999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|...+.++...          .+|++.||..+.+     .....++|.|||.            .+..        
T Consensus        83 GMQlLfe~SeE~~~~----------~GLg~i~G~V~r~-----~~~~~kvPHMGWN------------~l~~--------  127 (204)
T COG0118          83 GMQLLFERSEEGGGV----------KGLGLIPGKVVRF-----PAEDLKVPHMGWN------------QVEF--------  127 (204)
T ss_pred             hHHhhhhcccccCCC----------CCcceecceEEEc-----CCCCCCCCccccc------------eeec--------
Confidence            999999886666442          3588888876543     1112467777774            3222        


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                                ..+++||+++++..        .+|+.|||++.+.        +.-.++++++.+ .+|.++++..+  +
T Consensus       128 ----------~~~~~l~~gi~~~~--------~~YFVHSY~~~~~--------~~~~v~~~~~YG-~~f~AaV~k~N--~  178 (204)
T COG0118         128 ----------VRGHPLFKGIPDGA--------YFYFVHSYYVPPG--------NPETVVATTDYG-EPFPAAVAKDN--V  178 (204)
T ss_pred             ----------cCCChhhcCCCCCC--------EEEEEEEEeecCC--------CCceEEEeccCC-CeeEEEEEeCC--E
Confidence                      24788999987632        3499999999741        223466765555 45899998774  9


Q ss_pred             EEEeecCCccCc
Q psy12875        286 VGIQFHPEKNAY  297 (308)
Q Consensus       286 ~GvQFHPE~~~~  297 (308)
                      +|+|||||+|..
T Consensus       179 ~g~QFHPEKSg~  190 (204)
T COG0118         179 FGTQFHPEKSGK  190 (204)
T ss_pred             EEEecCcccchH
Confidence            999999999964

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.94  E-value=6.5e-26  Score=195.66  Aligned_cols=166  Identities=23%  Similarity=0.362  Sum_probs=118.3

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL  121 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl  121 (308)
                      +.++ .++.++|++.|+++..++++.+.++++..  ++||||+|||+.+...     +   ...++++.+.+.  ++|+|
T Consensus         8 ~~~~-~~l~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~glii~Gg~~~~~~-----~---~~~~~i~~~~~~--~~Pil   74 (188)
T TIGR00888         8 SQYT-QLIARRLRELGVYSELVPNTTPLEEIREK--NPKGIILSGGPSSVYA-----E---NAPRADEKIFEL--GVPVL   74 (188)
T ss_pred             chHH-HHHHHHHHHcCCEEEEEeCCCCHHHHhhc--CCCEEEECCCCCCcCc-----C---CchHHHHHHHhC--CCCEE
Confidence            3443 57789999999999999987765544331  3569999999764332     1   123445555663  49999


Q ss_pred             EechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc
Q psy12875        122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC  201 (308)
Q Consensus       122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g  201 (308)
                      |||+|||+|+.+ +||++.+...                               |.+|+.            ++      
T Consensus        75 GIC~G~Qll~~~-lgg~v~~~~~-------------------------------~~~g~~------------~v------  104 (188)
T TIGR00888        75 GICYGMQLMAKQ-LGGEVGRAEK-------------------------------REYGKA------------EL------  104 (188)
T ss_pred             EECHHHHHHHHh-cCceEecCCC-------------------------------ccceeE------------EE------
Confidence            999999999999 9997642110                               001110            11      


Q ss_pred             ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875        202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK  281 (308)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~  281 (308)
                           ..       ...+++|.++++++.        ++++|++.+..       +|++++++|+++++.   +++++++
T Consensus       105 -----~~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~~-------l~~~~~vla~~~~~~---v~a~~~~  154 (188)
T TIGR00888       105 -----EI-------LDEDDLFRGLPDEST--------VWMSHGDKVKE-------LPEGFKVLATSDNCP---VAAMAHE  154 (188)
T ss_pred             -----EE-------ecCCHhhcCCCCCcE--------EEeEccceeec-------CCCCCEEEEECCCCC---eEEEEEC
Confidence                 11       134578888876554        38899999863       899999999988765   7799999


Q ss_pred             CCCEEEEeecCCccCcccC
Q psy12875        282 EYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       282 ~~p~~GvQFHPE~~~~~~~  300 (308)
                      ++|+||+|||||++.+++|
T Consensus       155 ~~~~~g~QfHPE~~~~~~g  173 (188)
T TIGR00888       155 EKPIYGVQFHPEVTHTEYG  173 (188)
T ss_pred             CCCEEEEeeCCccCCChhh
Confidence            8899999999999987655

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.94  E-value=7.9e-26  Score=195.28  Aligned_cols=171  Identities=26%  Similarity=0.385  Sum_probs=117.6

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      +.+++|. .++.++|++.|..+.++++.. +.+.+ ..+ ++||||++||+.+...   .    ....+++++ .+  .+
T Consensus         6 d~~d~f~-~~i~~~l~~~g~~~~v~~~~~~~~~~~-~~~-~~dglIlsgGpg~~~d---~----~~~~~~l~~-~~--~~   72 (189)
T PRK05670          6 DNYDSFT-YNLVQYLGELGAEVVVYRNDEITLEEI-EAL-NPDAIVLSPGPGTPAE---A----GISLELIRE-FA--GK   72 (189)
T ss_pred             ECCCchH-HHHHHHHHHCCCcEEEEECCCCCHHHH-HhC-CCCEEEEcCCCCChHH---c----chHHHHHHH-hc--CC
Confidence            3456775 588999999999999999864 33333 223 4899999988743321   1    122234443 33  34


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +||||||+|||+|+.+ +||++.+...          .                                          
T Consensus        73 ~PvLGIClG~Qlla~a-lGg~v~~~~~----------~------------------------------------------   99 (189)
T PRK05670         73 VPILGVCLGHQAIGEA-FGGKVVRAKE----------I------------------------------------------   99 (189)
T ss_pred             CCEEEECHHHHHHHHH-hCCEEEecCC----------c------------------------------------------
Confidence            8999999999999999 9998743210          0                                          


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST  277 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a  277 (308)
                       .+|....+.        ...+++|++++.++.        ++++|++.|.+.+     +|++++++|+++++.   ++|
T Consensus       100 -~~g~~~~v~--------~~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~~la~s~~~~---i~a  154 (189)
T PRK05670        100 -MHGKTSPIE--------HDGSGIFAGLPNPFT--------VTRYHSLVVDRES-----LPDCLEVTAWTDDGE---IMG  154 (189)
T ss_pred             -ccCceeEEE--------eCCCchhccCCCCcE--------EEcchhheecccc-----CCCceEEEEEeCCCc---EEE
Confidence             001111111        124567877766544        4999999996422     889999999997775   789


Q ss_pred             EEecCCCEEEEeecCCccCcccC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                      ++++++|+||+|||||++.++.|
T Consensus       155 ~~~~~~~~~gvQfHPE~~~~~~g  177 (189)
T PRK05670        155 VRHKELPIYGVQFHPESILTEHG  177 (189)
T ss_pred             EEECCCCEEEEeeCCCcCCCcch
Confidence            99998899999999999876554

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.94  E-value=5.3e-26  Score=196.36  Aligned_cols=163  Identities=26%  Similarity=0.395  Sum_probs=122.4

Q ss_pred             EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchh--
Q psy12875         21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYA--   98 (308)
Q Consensus        21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~--   98 (308)
                      |||+++....     ..+....+|+..+++++|+++|+.++++++..+.++++..++++||||+|||++. .+. .|.  
T Consensus         1 ~gi~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~-~~~-~~~~~   73 (189)
T cd01745           1 IGITARLREE-----EGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDV-DPP-LYGEE   73 (189)
T ss_pred             CEEcCccccc-----cCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCC-Chh-hcCCC
Confidence            5888886554     1122236789999999999999999999987765556666789999999999843 221 111  


Q ss_pred             --------HHHHH--HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhH
Q psy12875         99 --------DAGRQ--ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQI  168 (308)
Q Consensus        99 --------~~~~~--~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i  168 (308)
                              ...++  ..+.++.+.+.  ++||||||+|||+|+.+ +||++.+                           
T Consensus        74 ~~~~~~~~~~~r~~~~~~~~~~~~~~--~~PilgiC~G~Q~l~~~-~Gg~v~~---------------------------  123 (189)
T cd01745          74 PHPELGPIDPERDAFELALLRAALER--GKPILGICRGMQLLNVA-LGGTLYQ---------------------------  123 (189)
T ss_pred             CCcccCCCChhHHHHHHHHHHHHHHC--CCCEEEEcchHHHHHHH-hCCeEEc---------------------------
Confidence                    12233  35566777774  48999999999999999 8887521                           


Q ss_pred             hhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeee
Q psy12875        169 NEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCIT  248 (308)
Q Consensus       169 ~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~  248 (308)
                                                                       ..                  .++++|++.|.
T Consensus       124 -------------------------------------------------~~------------------~v~~~H~~~v~  136 (189)
T cd01745         124 -------------------------------------------------DI------------------RVNSLHHQAIK  136 (189)
T ss_pred             -------------------------------------------------CC------------------ceechHHHHHh
Confidence                                                             00                  13789999886


Q ss_pred             eccccccCCCCCeEEEEEecCCCceEEEEEEecC-CCEEEEeecCCccCc
Q psy12875        249 RQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE-YPIVGIQFHPEKNAY  297 (308)
Q Consensus       249 ~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~-~p~~GvQFHPE~~~~  297 (308)
                      .       +|++++++|+++++.   ++|+++++ .+++|+|||||+..+
T Consensus       137 ~-------~~~~~~vla~~~d~~---vea~~~~~~~~~~gvQfHPE~~~~  176 (189)
T cd01745         137 R-------LADGLRVEARAPDGV---IEAIESPDRPFVLGVQWHPEWLAD  176 (189)
T ss_pred             h-------cCCCCEEEEECCCCc---EEEEEeCCCCeEEEEecCCCcCcc
Confidence            3       889999999987876   78999987 689999999999987

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>CHL00101 trpG anthranilate synthase component 2

Probab=99.94  E-value=6.6e-26  Score=195.93  Aligned_cols=172  Identities=22%  Similarity=0.287  Sum_probs=118.7

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      +++++|. .++++.|++.|..+.+++.+. +.+.+  ....+||||++||+.+...    .    .....+.++.+  .+
T Consensus         6 d~~dsft-~~l~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dgiiisgGpg~~~~----~----~~~~~i~~~~~--~~   72 (190)
T CHL00101          6 DNYDSFT-YNLVQSLGELNSDVLVCRNDEIDLSKI--KNLNIRHIIISPGPGHPRD----S----GISLDVISSYA--PY   72 (190)
T ss_pred             ECCCchH-HHHHHHHHhcCCCEEEEECCCCCHHHH--hhCCCCEEEECCCCCChHH----C----cchHHHHHHhc--CC
Confidence            4567775 578999999999999888653 22222  2247999999999743211    0    11122223344  34


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +|+||||+|||+|+.+ +||++.+...             +                                       
T Consensus        73 ~PiLGIClG~Qlla~~-~Gg~V~~~~~-------------~---------------------------------------   99 (190)
T CHL00101         73 IPILGVCLGHQSIGYL-FGGKIIKAPK-------------P---------------------------------------   99 (190)
T ss_pred             CcEEEEchhHHHHHHH-hCCEEEECCC-------------c---------------------------------------
Confidence            9999999999999999 9998743210             0                                       


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST  277 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a  277 (308)
                       .+|....+.        ...+++|++++..+.        ++++|++.|++..     +|++++++|+++++.   +++
T Consensus       100 -~~g~~~~~~--------~~~~~l~~~~~~~~~--------v~~~H~~~v~~~~-----lp~~~~vla~s~~~~---v~a  154 (190)
T CHL00101        100 -MHGKTSKIY--------HNHDDLFQGLPNPFT--------ATRYHSLIIDPLN-----LPSPLEITAWTEDGL---IMA  154 (190)
T ss_pred             -ccCceeeEe--------eCCcHhhccCCCceE--------EEcchhheeeccc-----CCCceEEEEEcCCCc---EEE
Confidence             011111111        124568888876654        4899999996432     889999999998876   779


Q ss_pred             EEecCCC-EEEEeecCCccCcccCC
Q psy12875        278 VEHKEYP-IVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p-~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++| +||+|||||++.++.|.
T Consensus       155 ~~~~~~~~i~gvQfHPE~~~~~~g~  179 (190)
T CHL00101        155 CRHKKYKMLRGIQFHPESLLTTHGQ  179 (190)
T ss_pred             EEeCCCCCEEEEEeCCccCCChhHH
Confidence            9999999 99999999999877664

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.94  E-value=5.6e-26  Score=194.69  Aligned_cols=167  Identities=22%  Similarity=0.345  Sum_probs=117.7

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL  121 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl  121 (308)
                      +++. .++.++|+++|+.++++++..+.+  +..++++||||+|||+.+.... .+    .++   .++..+  .++|+|
T Consensus         8 ~~~~-~~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~~dgvIl~Gg~~~~~~~-~~----~~~---~~~~~~--~~~Pil   74 (181)
T cd01742           8 SQYT-HLIARRVRELGVYSEILPNTTPLE--EIKLKNPKGIILSGGPSSVYEE-DA----PRV---DPEIFE--LGVPVL   74 (181)
T ss_pred             CchH-HHHHHHHHhcCceEEEecCCCChh--hhcccCCCEEEECCCccccccc-cc----chh---hHHHHh--cCCCEE
Confidence            4443 467899999999999999876533  2257789999999997543221 11    112   223333  249999


Q ss_pred             EechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc
Q psy12875        122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC  201 (308)
Q Consensus       122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g  201 (308)
                      |||+|||+|+.+ +||++.+...                               |..|+-            ++      
T Consensus        75 GIC~G~Qll~~~-~gg~v~~~~~-------------------------------~~~G~~------------~v------  104 (181)
T cd01742          75 GICYGMQLIAKA-LGGKVERGDK-------------------------------REYGKA------------EI------  104 (181)
T ss_pred             EEcHHHHHHHHh-cCCeEEeCCC-------------------------------CcceEE------------EE------
Confidence            999999999999 9997642110                               001110            11      


Q ss_pred             ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875        202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK  281 (308)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~  281 (308)
                           ..       .+.+++|++++..+.        ++++|++.+..       +|++++++|+++++.   +++++++
T Consensus       105 -----~~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~~-------l~~~~~~la~~~~~~---i~a~~~~  154 (181)
T cd01742         105 -----EI-------DDSSPLFEGLPDEQT--------VWMSHGDEVVK-------LPEGFKVIASSDNCP---VAAIANE  154 (181)
T ss_pred             -----Ee-------cCCChhhcCCCCceE--------EEcchhhhhhh-------cCCCcEEEEeCCCCC---EEEEEeC
Confidence                 00       235678888876554        38899998853       899999999998776   7799999


Q ss_pred             CCCEEEEeecCCccCcccCC
Q psy12875        282 EYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       282 ~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++||+|||||++.+++|.
T Consensus       155 ~~~~~g~QfHPE~~~~~~g~  174 (181)
T cd01742         155 EKKIYGVQFHPEVTHTEKGK  174 (181)
T ss_pred             CCcEEEEEcCCccccCcChH
Confidence            88999999999999887664

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.94  E-value=1e-25  Score=194.96  Aligned_cols=174  Identities=19%  Similarity=0.268  Sum_probs=118.1

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      +++|||. .++++.|++.|.++.+++.+. +.++++.  .++||||+.||+.+...   ..    ...+.++. .+  .+
T Consensus         6 d~~dsf~-~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~~---~~----~~~~~i~~-~~--~~   72 (191)
T PRK06774          6 DNYDSFT-YNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPNE---AG----ISLAVIRH-FA--DK   72 (191)
T ss_pred             ECCCchH-HHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChHh---CC----CchHHHHH-hc--CC
Confidence            4567885 478999999999999998763 3333322  26899999999753322   11    11233332 34  35


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +||||||+|||+|+.+ +||++.+...        ..                                           
T Consensus        73 ~PiLGIC~G~Qlla~~-~GG~v~~~~~--------~~-------------------------------------------  100 (191)
T PRK06774         73 LPILGVCLGHQALGQA-FGARVVRARQ--------VM-------------------------------------------  100 (191)
T ss_pred             CCEEEECHHHHHHHHH-hCCEEEeCCc--------ce-------------------------------------------
Confidence            9999999999999999 9998743210        00                                           


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCC-CceEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYK-SWEFVS  276 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~-~~~~v~  276 (308)
                        +|......        ...+++|++++..+.        ++++|++.+.+..     +|++++++|+++++ ..+.++
T Consensus       101 --~G~~~~~~--------~~~~~lf~~l~~~~~--------v~~~Hs~~v~~~~-----lp~~~~vlA~s~~d~~~~~i~  157 (191)
T PRK06774        101 --HGKTSAIC--------HSGQGVFRGLNQPLT--------VTRYHSLVIAADS-----LPGCFELTAWSERGGEMDEIM  157 (191)
T ss_pred             --ecceEEEE--------ecCchhhcCCCCCcE--------EEEeCcceeeccC-----CCCCeEEEEEeCCCCCcceEE
Confidence              01111111        124557877765543        5999999996322     88999999998644 334588


Q ss_pred             EEEecCCCEEEEeecCCccCcccC
Q psy12875        277 TVEHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       277 ai~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                      ++++++.|+||+|||||+..++.|
T Consensus       158 ~~~~~~~~i~GvQfHPE~~~~~~G  181 (191)
T PRK06774        158 GIRHRTLPLEGVQFHPESILSEQG  181 (191)
T ss_pred             EEEeCCCCEEEEEECCCcCCCccH
Confidence            899998899999999999877655

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.93  E-value=9.1e-25  Score=190.97  Aligned_cols=184  Identities=17%  Similarity=0.200  Sum_probs=118.5

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF  118 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~  118 (308)
                      +++++|+ .++++.|++.|+.+.+++++.+.+++.  ..++||||+.||+.+..     ..  ....++++.+.   .++
T Consensus         8 D~~dsf~-~nl~~~l~~~g~~~~v~~~~~~~~~l~--~~~~~~iIlsgGPg~~~-----d~--~~~~~li~~~~---~~~   74 (208)
T PRK05637          8 DNHDSFV-YNLVDAFAVAGYKCTVFRNTVPVEEIL--AANPDLICLSPGPGHPR-----DA--GNMMALIDRTL---GQI   74 (208)
T ss_pred             ECCcCHH-HHHHHHHHHCCCcEEEEeCCCCHHHHH--hcCCCEEEEeCCCCCHH-----Hh--hHHHHHHHHHh---CCC
Confidence            4556775 478999999999999999875544332  23789999988864321     11  11223333322   249


Q ss_pred             cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ||||||+|||+|+.+ +||++.+..  .         ..|                                        
T Consensus        75 PiLGIClG~Qlla~a-lGG~V~~~~--~---------~~G----------------------------------------  102 (208)
T PRK05637         75 PLLGICLGFQALLEH-HGGKVEPCG--P---------VHG----------------------------------------  102 (208)
T ss_pred             CEEEEcHHHHHHHHH-cCCeeccCC--c---------ccc----------------------------------------
Confidence            999999999999999 999874211  0         000                                        


Q ss_pred             CCcccceeeecccccCCCCCCcCccCCChhH----HHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceE
Q psy12875        199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKY----IKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEF  274 (308)
Q Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~  274 (308)
                         ....+.+.    .....+++|.+++.+.    ...++.+..|+++|++.|..       +|++++++|+++++.-.+
T Consensus       103 ---~~~~i~~~----~~~~~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~-------lp~~~~vlA~s~~~~~~v  168 (208)
T PRK05637        103 ---TTDNMILT----DAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV-------APDGMESLGTCSSEIGPV  168 (208)
T ss_pred             ---eEEEeEEC----CCCCCCcccCCCCcccccccccccCCceEEEEechhhhhc-------CCCCeEEEEEecCCCCCE
Confidence               00001100    0012345666554210    01111223479999999863       899999999986532225


Q ss_pred             EEEEEecCCCEEEEeecCCccCcccCC
Q psy12875        275 VSTVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       275 v~ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++.++++||+|||||+..|+.|.
T Consensus       169 ~~a~~~~~~~~~GvQfHPE~~~T~~G~  195 (208)
T PRK05637        169 IMAAETTDGKAIGLQFHPESVLSPTGP  195 (208)
T ss_pred             EEEEEECCCCEEEEEeCCccCcCCCHH
Confidence            789999999999999999999999885

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.92  E-value=3.2e-24  Score=183.52  Aligned_cols=156  Identities=19%  Similarity=0.348  Sum_probs=108.6

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      +++++|+++|+.+++++++.+.+++  ...++|||+++||+.+  +. +    .....++++++.++  ++||||||+||
T Consensus        11 ~~~~~l~~~G~~~~~~~~~~~~~~~--~~~~~dgiil~GG~~~--~~-~----~~~~~~~~~~~~~~--~~PvlGIC~G~   79 (178)
T cd01744          11 NILRELLKRGCEVTVVPYNTDAEEI--LKLDPDGIFLSNGPGD--PA-L----LDEAIKTVRKLLGK--KIPIFGICLGH   79 (178)
T ss_pred             HHHHHHHHCCCeEEEEECCCCHHHH--hhcCCCEEEECCCCCC--hh-H----hHHHHHHHHHHHhC--CCCEEEECHHH
Confidence            6789999999999999987654432  3357999999999632  21 1    13455667777774  49999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.+ +||++.+...             +                                        .++....+.
T Consensus        80 Q~l~~~-~Gg~v~~~~~-------------~----------------------------------------~~g~~~~v~  105 (178)
T cd01744          80 QLLALA-LGAKTYKMKF-------------G----------------------------------------HRGSNHPVK  105 (178)
T ss_pred             HHHHHH-cCCceecCCC-------------C----------------------------------------CCCCceeeE
Confidence            999999 9998743110             0                                        000000110


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEec-CCCceEEEEEEecCCCEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSK-YKSWEFVSTVEHKEYPIV  286 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~-~~~~~~v~ai~~~~~p~~  286 (308)
                      .       ....       ..        ..++++|+++++++.     +|++++++|++. ++.   ++|++++++|+|
T Consensus       106 ~-------~~~~-------~~--------~~v~~~H~~~v~~~~-----lp~~~~v~a~s~~~~~---i~a~~~~~~~i~  155 (178)
T cd01744         106 D-------LITG-------RV--------YITSQNHGYAVDPDS-----LPGGLEVTHVNLNDGT---VEGIRHKDLPVF  155 (178)
T ss_pred             E-------cCCC-------Cc--------EEEEcCceEEEcccc-----cCCceEEEEEECCCCc---EEEEEECCCCeE
Confidence            0       0000       01        124789999997543     889999999984 554   889999999999


Q ss_pred             EEeecCCccCcc
Q psy12875        287 GIQFHPEKNAYE  298 (308)
Q Consensus       287 GvQFHPE~~~~~  298 (308)
                      |+|||||+..++
T Consensus       156 GvQfHPE~~~~~  167 (178)
T cd01744         156 SVQFHPEASPGP  167 (178)
T ss_pred             EEeeCCCCCCCC
Confidence            999999997753

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK00758 GMP synthase subunit A; Validated

Probab=99.92  E-value=7.6e-25  Score=188.36  Aligned_cols=163  Identities=23%  Similarity=0.391  Sum_probs=113.7

Q ss_pred             CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCC-CEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875         41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQI-NGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP  119 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~-dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P  119 (308)
                      +++|. .++.++++++|.++.++++..+.+    .++++ |||++|||+ +.+.       ...+.++++   +  .++|
T Consensus         8 ~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~----~l~~~~dgivi~Gg~-~~~~-------~~~~~~~l~---~--~~~P   69 (184)
T PRK00758          8 GGQYN-HLIHRTLRYLGVDAKIIPNTTPVE----EIKAFEDGLILSGGP-DIER-------AGNCPEYLK---E--LDVP   69 (184)
T ss_pred             CCchH-HHHHHHHHHcCCcEEEEECCCCHH----HHhhcCCEEEECCCC-Chhh-------ccccHHHHH---h--CCCC
Confidence            34554 467899999999999888765443    34556 999999997 2211       112233333   2  3499


Q ss_pred             EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      |||||+|||+|+.+ +||++.+...                               +.+|+-            ++    
T Consensus        70 ilGIC~G~Q~L~~a-~Gg~v~~~~~-------------------------------~~~g~~------------~i----  101 (184)
T PRK00758         70 ILGICLGHQLIAKA-FGGEVGRGEY-------------------------------GEYALV------------EV----  101 (184)
T ss_pred             EEEEeHHHHHHHHh-cCcEEecCCC-------------------------------ceeeeE------------EE----
Confidence            99999999999999 9997642110                               000100            11    


Q ss_pred             CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875        200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE  279 (308)
Q Consensus       200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~  279 (308)
                             ..       ...+.+|.++++.+.        ++++|++.+..       +|++++++|+++++.   |+|++
T Consensus       102 -------~~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~~-------l~~~~~~la~~~~~~---v~a~~  149 (184)
T PRK00758        102 -------EI-------LDEDDILKGLPPEIR--------VWASHADEVKE-------LPDGFEILARSDICE---VEAMK  149 (184)
T ss_pred             -------EE-------cCCChhhhCCCCCcE--------EEeehhhhhhh-------CCCCCEEEEECCCCC---EEEEE
Confidence                   10       124557777776554        48999998853       899999999998886   77999


Q ss_pred             ecCCCEEEEeecCCccCcccCC
Q psy12875        280 HKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       280 ~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++||+|||||++.+++|.
T Consensus       150 ~~~~~~~g~QfHPE~~~~~~g~  171 (184)
T PRK00758        150 HKEKPIYGVQFHPEVAHTEYGE  171 (184)
T ss_pred             ECCCCEEEEEcCCccCCCchHH
Confidence            9888899999999999887664

>PLN02335 anthranilate synthase

Probab=99.92  E-value=1.9e-24  Score=190.92  Aligned_cols=177  Identities=20%  Similarity=0.287  Sum_probs=120.2

Q ss_pred             CCCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875         38 YPNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV  116 (308)
Q Consensus        38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~  116 (308)
                      .+++++|. .+++++|++.|..+.+++++. +.+.+  ...++||||+.||+.+...   ...    ..+.+++ ..  .
T Consensus        24 iD~~dsft-~~i~~~L~~~g~~~~v~~~~~~~~~~~--~~~~~d~iVisgGPg~p~d---~~~----~~~~~~~-~~--~   90 (222)
T PLN02335         24 IDNYDSFT-YNLCQYMGELGCHFEVYRNDELTVEEL--KRKNPRGVLISPGPGTPQD---SGI----SLQTVLE-LG--P   90 (222)
T ss_pred             EECCCCHH-HHHHHHHHHCCCcEEEEECCCCCHHHH--HhcCCCEEEEcCCCCChhh---ccc----hHHHHHH-hC--C
Confidence            34556774 578999999999999998753 22222  2246899999998754322   111    1232322 22  4


Q ss_pred             CccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        117 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       117 ~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      ++||||||+|||+|+.+ +||++.+......                                                 
T Consensus        91 ~~PiLGIClG~QlLa~a-lGg~v~~~~~~~~-------------------------------------------------  120 (222)
T PLN02335         91 LVPLFGVCMGLQCIGEA-FGGKIVRSPFGVM-------------------------------------------------  120 (222)
T ss_pred             CCCEEEecHHHHHHHHH-hCCEEEeCCCccc-------------------------------------------------
Confidence            59999999999999999 9998753221000                                                 


Q ss_pred             ccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC-eEEEEEecCCCceEE
Q psy12875        197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET-WNILTLSKYKSWEFV  275 (308)
Q Consensus       197 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~-~~via~s~~~~~~~v  275 (308)
                         +|....+.+.     ....++||++++..+.        ++++|+++|.+..     +|++ ++++|+++++.   |
T Consensus       121 ---~G~~~~v~~~-----~~~~~~Lf~~l~~~~~--------v~~~H~~~v~~~~-----lp~~~~~v~a~~~~~~---v  176 (222)
T PLN02335        121 ---HGKSSPVHYD-----EKGEEGLFSGLPNPFT--------AGRYHSLVIEKDT-----FPSDELEVTAWTEDGL---I  176 (222)
T ss_pred             ---cCceeeeEEC-----CCCCChhhhCCCCCCE--------EEechhheEeccc-----CCCCceEEEEEcCCCC---E
Confidence               1111111111     0124578988876554        4999999998654     5665 99999987775   8


Q ss_pred             EEEEecCCC-EEEEeecCCccCcccCC
Q psy12875        276 STVEHKEYP-IVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       276 ~ai~~~~~p-~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++++| +||+|||||+..++.|.
T Consensus       177 ~ai~~~~~~~i~GvQfHPE~~~~~~g~  203 (222)
T PLN02335        177 MAARHRKYKHIQGVQFHPESIITTEGK  203 (222)
T ss_pred             EEEEecCCCCEEEEEeCCCCCCChhHH
Confidence            899999888 89999999999887663

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=99.92  E-value=7.9e-25  Score=189.16  Aligned_cols=178  Identities=24%  Similarity=0.391  Sum_probs=125.6

Q ss_pred             CCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875         40 NYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP  119 (308)
Q Consensus        40 ~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P  119 (308)
                      .+++|. .++.+++++.|..+.+++++.+.......++++||||++||+.+...       .....++++++.+  .++|
T Consensus         5 ~~~~~~-~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-------~~~~~~~i~~~~~--~~~P   74 (192)
T PF00117_consen    5 NGDSFT-HSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-------IEGLIELIREARE--RKIP   74 (192)
T ss_dssp             SSHTTH-HHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-------HHHHHHHHHHHHH--TTSE
T ss_pred             CCHHHH-HHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-------ccccccccccccc--cceE
Confidence            345664 68999999999999999987644333225889999999999754321       3355566666666  4599


Q ss_pred             EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      +||||+|||+|+.+ +||.+.+..                              +.|..|+.                  
T Consensus        75 ilGIC~G~Q~la~~-~G~~v~~~~------------------------------~~~~~g~~------------------  105 (192)
T PF00117_consen   75 ILGICLGHQILAHA-LGGKVVPSP------------------------------EKPHHGGN------------------  105 (192)
T ss_dssp             EEEETHHHHHHHHH-TTHEEEEEE------------------------------SEEEEEEE------------------
T ss_pred             EEEEeehhhhhHHh-cCCcccccc------------------------------cccccccc------------------
Confidence            99999999999999 999764221                              00111110                  


Q ss_pred             CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875        200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE  279 (308)
Q Consensus       200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~  279 (308)
                          ..+..       ...+++|.+.++.+.+        +++|++.|.+..+    +|++++++|++.++.  .++++.
T Consensus       106 ----~~~~~-------~~~~~~~~~~~~~~~~--------~~~H~~~v~~~~~----~p~~~~~la~s~~~~--~~~~~~  160 (192)
T PF00117_consen  106 ----IPISE-------TPEDPLFYGLPESFKA--------YQYHSDAVNPDDL----LPEGFEVLASSSDGC--PIQAIR  160 (192)
T ss_dssp             ----EEEEE-------EEEHGGGTTSTSEEEE--------EEEECEEEEEGHH----HHTTEEEEEEETTTT--EEEEEE
T ss_pred             ----ccccc-------cccccccccccccccc--------ccccceeeecccc----ccccccccccccccc--cccccc
Confidence                01110       0124678887776654        8999999985321    789999999996642  277999


Q ss_pred             ecCCCEEEEeecCCccCcccCC
Q psy12875        280 HKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       280 ~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      +.++|+||+|||||++.++.+.
T Consensus       161 ~~~~~i~g~QfHPE~~~~~~~~  182 (192)
T PF00117_consen  161 HKDNPIYGVQFHPEFSSSPGGP  182 (192)
T ss_dssp             ECTTSEEEESSBTTSTTSTTHH
T ss_pred             ccccEEEEEecCCcCCCCCCcc
Confidence            9988999999999999988653

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.92  E-value=2.5e-24  Score=192.09  Aligned_cols=187  Identities=20%  Similarity=0.290  Sum_probs=124.9

Q ss_pred             EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH
Q psy12875         21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA  100 (308)
Q Consensus        21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~  100 (308)
                      |+|+...... +.   ...++..| ...+...+...|.....+....... ++ .++++||||++||+.+...   ...+
T Consensus         4 i~iL~~~~~~-~~---~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~~~dgvvi~Gg~~~~~d---~~~w   73 (237)
T PRK09065          4 LLIIQTGTPP-PS---IRARYGDF-PHWIRVALGLAEQPVVVVRVFAGEP-LP-APDDFAGVIITGSWAMVTD---RLDW   73 (237)
T ss_pred             EEEEECCCCC-hh---HHhhcCCH-HHHHHHHhccCCceEEEEeccCCCC-CC-ChhhcCEEEEeCCCcccCC---Cchh
Confidence            7888554432 11   12223344 3344556667788877776654321 22 3568999999999865443   2345


Q ss_pred             HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeee
Q psy12875        101 GRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGV  180 (308)
Q Consensus       101 ~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGi  180 (308)
                      ...+.++++++.+.  ++||||||+|||+|+.+ +||++.+.....                              -+|+
T Consensus        74 ~~~~~~~i~~~~~~--~~PvlGIC~G~Qlla~a-lGg~V~~~~~g~------------------------------e~G~  120 (237)
T PRK09065         74 SERTADWLRQAAAA--GMPLLGICYGHQLLAHA-LGGEVGYNPAGR------------------------------ESGT  120 (237)
T ss_pred             HHHHHHHHHHHHHC--CCCEEEEChhHHHHHHH-cCCccccCCCCC------------------------------ccce
Confidence            55677888888874  49999999999999999 999874321000                              0010


Q ss_pred             ehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC
Q psy12875        181 CLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET  260 (308)
Q Consensus       181 ClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~  260 (308)
                      .            .|           .++    .....+++|++++..+.+        +++|++.+..       +|++
T Consensus       121 ~------------~v-----------~~~----~~~~~~~l~~~~~~~~~v--------~~~H~d~v~~-------lp~~  158 (237)
T PRK09065        121 V------------TV-----------ELH----PAAADDPLFAGLPAQFPA--------HLTHLQSVLR-------LPPG  158 (237)
T ss_pred             E------------EE-----------EEc----cccccChhhhcCCccCcE--------eeehhhhhhh-------CCCC
Confidence            0            11           110    112356788888776654        8899998863       8999


Q ss_pred             eEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        261 WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       261 ~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                      ++++|+++++.   ++++++++ ++||+|||||++.
T Consensus       159 ~~~la~s~~~~---iqa~~~~~-~i~gvQfHPE~~~  190 (237)
T PRK09065        159 AVVLARSAQDP---HQAFRYGP-HAWGVQFHPEFTA  190 (237)
T ss_pred             CEEEEcCCCCC---eeEEEeCC-CEEEEEeCCcCCH
Confidence            99999998887   67999976 6999999999863

>PLN02347 GMP synthetase

Probab=99.92  E-value=4.7e-24  Score=209.32  Aligned_cols=174  Identities=21%  Similarity=0.267  Sum_probs=121.6

Q ss_pred             CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875         41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV  120 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv  120 (308)
                      +++|. .++.+++++.|..++++|++.+.+++..  .++||||+|||+.+.... .+......+++.+.   +  .++||
T Consensus        19 G~~~t-~~I~r~lrelgv~~~v~p~~~~~~~i~~--~~~dgIILsGGP~sv~~~-~~p~~~~~i~~~~~---~--~~iPI   89 (536)
T PLN02347         19 GSQYT-HLITRRVRELGVYSLLLSGTASLDRIAS--LNPRVVILSGGPHSVHVE-GAPTVPEGFFDYCR---E--RGVPV   89 (536)
T ss_pred             CCcHH-HHHHHHHHHCCCeEEEEECCCCHHHHhc--CCCCEEEECCCCCccccc-CCchhhHHHHHHHH---h--cCCcE
Confidence            44553 5788999999999999998866554432  278999999998655432 12122223344332   3  34999


Q ss_pred             EEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875        121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS  200 (308)
Q Consensus       121 lGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~  200 (308)
                      ||||+|||+|+.+ +||++.+...                               +-+|+.            .+     
T Consensus        90 LGIClG~QlLa~a-lGG~V~~~~~-------------------------------~e~G~~------------~v-----  120 (536)
T PLN02347         90 LGICYGMQLIVQK-LGGEVKPGEK-------------------------------QEYGRM------------EI-----  120 (536)
T ss_pred             EEECHHHHHHHHH-cCCEEEecCC-------------------------------cccceE------------EE-----
Confidence            9999999999999 9998642100                               001110            11     


Q ss_pred             cccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEe
Q psy12875        201 CKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEH  280 (308)
Q Consensus       201 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~  280 (308)
                            ..       ..+++||++++....      ..++++|++.+..       +|++|+++|+++++.   ++|+++
T Consensus       121 ------~i-------~~~~~Lf~~l~~~~~------~~v~~~Hsd~V~~-------lP~g~~vlA~s~~~~---iaai~~  171 (536)
T PLN02347        121 ------RV-------VCGSQLFGDLPSGET------QTVWMSHGDEAVK-------LPEGFEVVAKSVQGA---VVAIEN  171 (536)
T ss_pred             ------EE-------cCCChhhhcCCCCce------EEEEEEEEEEeee-------CCCCCEEEEEeCCCc---EEEEEE
Confidence                  11       135678888876410      1358999998863       899999999998876   789999


Q ss_pred             cCCCEEEEeecCCccCcccCC
Q psy12875        281 KEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       281 ~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++.|+||+|||||++.++.|.
T Consensus       172 ~~~~i~GvQFHPE~~~t~~G~  192 (536)
T PLN02347        172 RERRIYGLQYHPEVTHSPKGM  192 (536)
T ss_pred             CCCCEEEEEccCCCCccchHH
Confidence            989999999999999988774

>PRK05665 amidotransferase; Provisional

Probab=99.91  E-value=3.7e-24  Score=190.99  Aligned_cols=185  Identities=18%  Similarity=0.200  Sum_probs=122.6

Q ss_pred             EEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe--EEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchh
Q psy12875         21 IGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR--VVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYA   98 (308)
Q Consensus        21 IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~--~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~   98 (308)
                      |+|+.+.... +   +.......| ...+.++|..++..  +.......  .+++..++++||+|++||+++++.   -.
T Consensus         5 i~IL~~~~~~-~---~~~~~~g~~-~~~~~~ll~~~~~~~~~~~~~~~~--~~~p~~~~~~dgiiitGs~~~v~~---~~   74 (240)
T PRK05665          5 ICILETDVLR-P---ELVAQYQGY-GRMFEQLFARQPIAAEFVVYNVVQ--GDYPADDEKFDAYLVTGSKADSFG---TD   74 (240)
T ss_pred             EEEEECCCCC-H---HHHHHhCCH-HHHHHHHHHhCCCCceEEEEeccC--CCCCCCcccCCEEEECCCCCCccc---cc
Confidence            8999665542 1   111222334 33456777777743  33332222  123335678999999999876654   23


Q ss_pred             HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCee
Q psy12875         99 DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVL  178 (308)
Q Consensus        99 ~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~Pil  178 (308)
                      .+.+.+.++++++.+.  ++|+||||+|+|+|+.+ +||++.+...             |..                 .
T Consensus        75 pwi~~l~~~i~~~~~~--~~PilGIC~GhQlla~A-lGG~V~~~~~-------------G~e-----------------~  121 (240)
T PRK05665         75 PWIQTLKTYLLKLYER--GDKLLGVCFGHQLLALL-LGGKAERASQ-------------GWG-----------------V  121 (240)
T ss_pred             hHHHHHHHHHHHHHhc--CCCEEEEeHHHHHHHHH-hCCEEEeCCC-------------Ccc-----------------c
Confidence            4666788888888885  49999999999999999 9998743210             000                 0


Q ss_pred             eeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC
Q psy12875        179 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT  258 (308)
Q Consensus       179 GiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~  258 (308)
                      |+.            .           +..       ....+++...+..+.        ++++|++.|..       ||
T Consensus       122 G~~------------~-----------~~~-------~~~~~~~~~~~~~~~--------~~~~H~D~V~~-------LP  156 (240)
T PRK05665        122 GIH------------R-----------YQL-------AAHAPWMSPAVTELT--------LLISHQDQVTA-------LP  156 (240)
T ss_pred             ceE------------E-----------EEe-------cCCCccccCCCCceE--------EEEEcCCeeee-------CC
Confidence            000            1           111       123457776666554        38899999874       99


Q ss_pred             CCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        259 ETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       259 ~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                      ++++++|+|+.|.   +++++..+ ++||+|||||++..
T Consensus       157 ~ga~~La~s~~~~---~q~~~~~~-~~~g~QfHPE~~~~  191 (240)
T PRK05665        157 EGATVIASSDFCP---FAAYHIGD-QVLCFQGHPEFVHD  191 (240)
T ss_pred             CCcEEEEeCCCCc---EEEEEeCC-CEEEEecCCcCcHH
Confidence            9999999999998   66998765 69999999999853

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.91  E-value=5.4e-24  Score=184.15  Aligned_cols=164  Identities=20%  Similarity=0.247  Sum_probs=116.1

Q ss_pred             HHHHHHHHHcC-CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAG-ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG-~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      ..+.+++++.| ......++..+.+.+  ...+.||+|++||+++++.. .+  +.+...++++++...  ++||||||+
T Consensus        15 ~li~r~~re~g~v~~e~~~~~~~~~~~--~~~~~~giIlsGgp~sv~~~-~~--w~~~~~~~i~~~~~p--~~pvLGIC~   87 (198)
T COG0518          15 GLIARRLRELGYVYSEIVPYTGDAEEL--PLDSPDGIIISGGPMSVYDE-DP--WLPREKDLIKDAGVP--GKPVLGICL   87 (198)
T ss_pred             HHHHHHHHHcCCceEEEEeCCCCcccc--cccCCCEEEEcCCCCCCccc-cc--cchhHHHHHHHhCCC--CCCEEEECh
Confidence            46789999999 777777777655433  23456999999999766553 11  455667777776653  368999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+.+ +||++.+... .                                                       +...
T Consensus        88 G~Ql~A~~-lGg~V~~~~~-~-------------------------------------------------------E~G~  110 (198)
T COG0518          88 GHQLLAKA-LGGKVERGPK-R-------------------------------------------------------EIGW  110 (198)
T ss_pred             hHHHHHHH-hCCEEeccCC-C-------------------------------------------------------ccce
Confidence            99999999 9998743210 0                                                       0111


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                      ..+.+.    ...+++|++++....       .|+++|.+.+..       +|++|+++|+|+.|.   ++|+++. .++
T Consensus       111 ~~v~~~----~~~~~l~~gl~~~~~-------~v~~sH~D~v~~-------lP~g~~vlA~s~~cp---~qa~~~~-~~~  168 (198)
T COG0518         111 TPVELT----EGDDPLFAGLPDLFT-------TVFMSHGDTVVE-------LPEGAVVLASSETCP---NQAFRYG-KRA  168 (198)
T ss_pred             EEEEEe----cCccccccCCccccC-------ccccchhCcccc-------CCCCCEEEecCCCCh---hhheecC-CcE
Confidence            111110    113368888876552       148999999974       999999999999998   5599998 789


Q ss_pred             EEEeecCCccC
Q psy12875        286 VGIQFHPEKNA  296 (308)
Q Consensus       286 ~GvQFHPE~~~  296 (308)
                      ||+|||||...
T Consensus       169 ~gvQFHpEv~~  179 (198)
T COG0518         169 YGVQFHPEVTH  179 (198)
T ss_pred             EEEeeeeEEeH
Confidence            99999999986

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.91  E-value=4.3e-23  Score=193.43  Aligned_cols=160  Identities=18%  Similarity=0.363  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      +..+|+++|+++|+.++++|++.+.+++..  .++|||+|+||+.  ++.    + .+...+.++++.+.  ++||||||
T Consensus       187 ~k~nivr~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIvLSgGPg--dp~----~-~~~~~~~i~~~~~~--~~PilGIC  255 (360)
T PRK12564        187 VKRNILRELAERGCRVTVVPATTTAEEILA--LNPDGVFLSNGPG--DPA----A-LDYAIEMIRELLEK--KIPIFGIC  255 (360)
T ss_pred             cHHHHHHHHHHCCCEEEEEeCCCCHHHHHh--cCCCEEEEeCCCC--ChH----H-HHHHHHHHHHHHHc--CCeEEEEC
Confidence            557899999999999999998866544432  2699999999963  231    1 13556777777764  49999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|||+|+.+ +||++.+....         +                                            +|...
T Consensus       256 lG~QlLa~a-~Gg~v~kl~~g---------h--------------------------------------------~G~~~  281 (360)
T PRK12564        256 LGHQLLALA-LGAKTYKMKFG---------H--------------------------------------------RGANH  281 (360)
T ss_pred             HHHHHHHHH-hCCcEeccCCC---------c--------------------------------------------cCCce
Confidence            999999999 99987532110         0                                            01000


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY  283 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~  283 (308)
                      .+..       ...        .+       ...+.++|+++|++..     +|+++++++++ +|+.   |++++++++
T Consensus       282 pv~~-------~~~--------~~-------~~its~~H~~~V~~~~-----lp~~l~v~a~~~~Dg~---iegi~~~~~  331 (360)
T PRK12564        282 PVKD-------LET--------GK-------VEITSQNHGFAVDEDS-----LPANLEVTHVNLNDGT---VEGLRHKDL  331 (360)
T ss_pred             eeEE-------CCC--------Cc-------EEEEecCcccEEcccc-----cCCceEEEEEeCCCCc---EEEEEECCC
Confidence            1110       000        00       0124779999997544     78899999998 4554   889999999


Q ss_pred             CEEEEeecCCccCccc
Q psy12875        284 PIVGIQFHPEKNAYEW  299 (308)
Q Consensus       284 p~~GvQFHPE~~~~~~  299 (308)
                      |+||+|||||+...++
T Consensus       332 pi~gVQfHPE~~~gp~  347 (360)
T PRK12564        332 PAFSVQYHPEASPGPH  347 (360)
T ss_pred             CEEEEEeCCcCCCCCC
Confidence            9999999999987654

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.90  E-value=3.4e-23  Score=203.34  Aligned_cols=166  Identities=20%  Similarity=0.326  Sum_probs=117.7

Q ss_pred             cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875         43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG  122 (308)
Q Consensus        43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG  122 (308)
                      +| ...+.++|+++|+.+.++|++.+.++++..  ++||||+|||+.++... .+..    +   .+...+  .++||||
T Consensus        14 q~-~~li~r~lrelg~~~~v~p~~~~~~~l~~~--~~dgIIlsGGp~sv~~~-~~p~----~---~~~i~~--~~~PvLG   80 (511)
T PRK00074         14 QY-TQLIARRVRELGVYSEIVPYDISAEEIRAF--NPKGIILSGGPASVYEE-GAPR----A---DPEIFE--LGVPVLG   80 (511)
T ss_pred             Cc-HHHHHHHHHHCCCeEEEEECCCCHHHHhcc--CCCEEEECCCCcccccC-CCcc----c---cHHHHh--CCCCEEE
Confidence            45 357889999999999999987765544332  56999999998654331 1111    1   122334  3499999


Q ss_pred             echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875        123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK  202 (308)
Q Consensus       123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~  202 (308)
                      ||+|||+|+.+ +||++.+...                               +-.|+-            .+       
T Consensus        81 IC~G~QlLa~~-lGG~V~~~~~-------------------------------~e~G~~------------~i-------  109 (511)
T PRK00074         81 ICYGMQLMAHQ-LGGKVERAGK-------------------------------REYGRA------------EL-------  109 (511)
T ss_pred             ECHHHHHHHHH-hCCeEEecCC-------------------------------cccceE------------EE-------
Confidence            99999999999 9997642110                               000000            11       


Q ss_pred             cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875        203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE  282 (308)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~  282 (308)
                          ..       ..+++||++++..+.        ++++|++.|..       +|++++++|+++++.   ++++++.+
T Consensus       110 ----~i-------~~~~~Lf~~l~~~~~--------v~~~H~d~V~~-------lp~g~~vlA~s~~~~---v~ai~~~~  160 (511)
T PRK00074        110 ----EV-------DNDSPLFKGLPEEQD--------VWMSHGDKVTE-------LPEGFKVIASTENCP---IAAIANEE  160 (511)
T ss_pred             ----EE-------cCCChhhhcCCCceE--------EEEECCeEEEe-------cCCCcEEEEEeCCCC---EEEEEeCC
Confidence                11       135678888876544        48899999964       899999999998876   78999988


Q ss_pred             CCEEEEeecCCccCcccCC
Q psy12875        283 YPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       283 ~p~~GvQFHPE~~~~~~~~  301 (308)
                      .++||+|||||++.++.|.
T Consensus       161 ~~i~GvQFHPE~~~t~~G~  179 (511)
T PRK00074        161 RKFYGVQFHPEVTHTPQGK  179 (511)
T ss_pred             CCEEEEeCCCCcCCchhHH
Confidence            8999999999999987764

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.90  E-value=3.1e-23  Score=181.48  Aligned_cols=184  Identities=21%  Similarity=0.319  Sum_probs=115.6

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH-HHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG-RQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~-~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .++.++|+.+|+++..++.   ++    .++++|+||+||+++ ...  ...... +.+.+.++++.++  ++|+||||+
T Consensus        15 ~sl~~al~~~g~~v~vv~~---~~----~l~~~d~iIlPG~g~-~~~--~~~~l~~~gl~~~i~~~~~~--~~pvlGICl   82 (210)
T CHL00188         15 HSVSRAIQQAGQQPCIINS---ES----ELAQVHALVLPGVGS-FDL--AMKKLEKKGLITPIKKWIAE--GNPFIGICL   82 (210)
T ss_pred             HHHHHHHHHcCCcEEEEcC---HH----HhhhCCEEEECCCCc-hHH--HHHHHHHCCHHHHHHHHHHc--CCCEEEECH
Confidence            4778999999999887753   22    356799999999774 111  111111 1455667777774  499999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+.. .++...          .++.+.+|..+...    .....++|.+||-            ++.....+    
T Consensus        83 G~Qll~~~-~~~~~~----------~glg~~~G~v~~~~----~~~~~~~p~~Gw~------------~v~~~~~~----  131 (210)
T CHL00188         83 GLHLLFET-SEEGKE----------EGLGIYKGQVKRLK----HSPVKVIPHMGWN------------RLECQNSE----  131 (210)
T ss_pred             HHHHHhhc-cccCCc----------CCccceeEEEEECC----CCCCCccCccCCc------------cceecCCc----
Confidence            99999988 554332          23555555443220    0112356777764            33322100    


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCC-ceEEEEEEecCCC
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKS-WEFVSTVEHKEYP  284 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~-~~~v~ai~~~~~p  284 (308)
                              ....++.+|++++..+.        ++++|++.+.+         ++.+.++.+..++ ..++++++..  +
T Consensus       132 --------~~~~~~~lf~~l~~~~~--------v~~~HS~~v~p---------~~~~~l~~t~~~~~~~~v~a~~~~--~  184 (210)
T CHL00188        132 --------CQNSEWVNWKAWPLNPW--------AYFVHSYGVMP---------KSQACATTTTFYGKQQMVAAIEYD--N  184 (210)
T ss_pred             --------ccccCChhhcCCCCCCE--------EEEeCccEecC---------CCCceEEEEEecCCcceEEEEecC--C
Confidence                    00112568998887655        49999998853         2334455544332 4579999964  7


Q ss_pred             EEEEeecCCccCcccCC
Q psy12875        285 IVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       285 ~~GvQFHPE~~~~~~~~  301 (308)
                      +||+|||||++ ++.|.
T Consensus       185 i~GvQFHPE~s-~~~G~  200 (210)
T CHL00188        185 IFAMQFHPEKS-GEFGL  200 (210)
T ss_pred             EEEEecCCccc-cHhHH
Confidence            99999999999 66654

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.90  E-value=1.4e-22  Score=189.61  Aligned_cols=159  Identities=18%  Similarity=0.352  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      +..+++++|++.|+.++++|++.+.+++..  ..+|||+++||+.+  +     .......+.++++.+   ++||||||
T Consensus       183 ~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~pDGIiLSgGPgd--p-----~~~~~~i~~i~~~~~---~~PILGIC  250 (358)
T TIGR01368       183 VKQNILRRLVKRGCEVTVVPYDTDAEEIKK--YNPDGIFLSNGPGD--P-----AAVEPAIETIRKLLE---KIPIFGIC  250 (358)
T ss_pred             cHHHHHHHHHHCCCEEEEEcCCCCHHHHHh--hCCCEEEECCCCCC--H-----HHHHHHHHHHHHHHc---CCCEEEEC
Confidence            446899999999999999998765443322  24699999999632  2     112345566676664   49999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|||+|+.+ +||++.+...         .+                                            +|...
T Consensus       251 lG~QlLa~a-~Gg~v~kl~~---------gh--------------------------------------------~G~nh  276 (358)
T TIGR01368       251 LGHQLLALA-FGAKTYKMKF---------GH--------------------------------------------RGGNH  276 (358)
T ss_pred             HHHHHHHHH-hCCceeccCc---------Cc--------------------------------------------CCCce
Confidence            999999999 9998753211         00                                            01000


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeEEEEEe-cCCCceEEEEEEecC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWNILTLS-KYKSWEFVSTVEHKE  282 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~via~s-~~~~~~~v~ai~~~~  282 (308)
                      .+..       .....++               .+.++|+++|++++     ++ +++++++++ +|+.   |+++++++
T Consensus       277 pV~~-------~~~~~v~---------------itsqnH~~aV~~~~-----l~~~~l~vta~~~nDg~---Vegi~h~~  326 (358)
T TIGR01368       277 PVKD-------LITGRVE---------------ITSQNHGYAVDPDS-----LPAGDLEVTHVNLNDGT---VEGIRHKD  326 (358)
T ss_pred             eeEE-------CCCCcEE---------------EeecCCCcEEcccc-----cCCCceEEEEEECCCCc---EEEEEECC
Confidence            0100       0011111               24679999998654     45 689999998 4655   88999999


Q ss_pred             CCEEEEeecCCccCccc
Q psy12875        283 YPIVGIQFHPEKNAYEW  299 (308)
Q Consensus       283 ~p~~GvQFHPE~~~~~~  299 (308)
                      +|+||||||||+...++
T Consensus       327 ~pi~gVQfHPE~~~gp~  343 (358)
T TIGR01368       327 LPVFSVQYHPEASPGPH  343 (358)
T ss_pred             CCEEEEEECCCCCCCCC
Confidence            99999999999986543

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.90  E-value=9e-23  Score=182.54  Aligned_cols=170  Identities=21%  Similarity=0.326  Sum_probs=110.6

Q ss_pred             HHHHHHHHHcCCe---EEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC-chhHHHH----HHHHHHHHHHHcCCCc
Q psy12875         47 ASYVKNIEAAGAR---VVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN-GYADAGR----QILHLVDKINEEGVTF  118 (308)
Q Consensus        47 ~~~~~~l~~aG~~---~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~-~~~~~~~----~~~e~~~~~~~~g~~~  118 (308)
                      ..|.+++++.|..   +..++...... .+..++++||||++||+.+.+... ....+..    .+.+.++.+.+.  ++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~--~~   94 (242)
T PRK07567         18 AEYAAFLRYTGLDPAELRRIRLDREPL-PDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVAR--DF   94 (242)
T ss_pred             chHHHHHHhcCCCccceEEEecccCCC-CCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhc--CC
Confidence            4567888888865   44444333211 111467899999999986554310 0122222    334455555564  49


Q ss_pred             cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ||||||+|||+|+.+ +||++.+. .             |.                 -+|+-            .+   
T Consensus        95 PvLGIC~G~Qlla~a-~GG~V~~~-~-------------g~-----------------e~G~~------------~v---  127 (242)
T PRK07567         95 PFLGACYGVGTLGHH-QGGVVDRT-Y-------------GE-----------------PVGAV------------TV---  127 (242)
T ss_pred             CEEEEchhHHHHHHH-cCCEEecC-C-------------CC-----------------cCccE------------EE---
Confidence            999999999999999 99987421 0             00                 00000            11   


Q ss_pred             CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875        199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV  278 (308)
Q Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai  278 (308)
                              .+.    .....+++|.+++..+.+        +++|++.|..       +|++++++|+|+++.   ++|+
T Consensus       128 --------~l~----~~g~~~~l~~~~~~~~~~--------~~~H~d~V~~-------lp~~~~vlA~s~~~~---vqa~  177 (242)
T PRK07567        128 --------SLT----DAGRADPLLAGLPDTFTA--------FVGHKEAVSA-------LPPGAVLLATSPTCP---VQMF  177 (242)
T ss_pred             --------EEC----CccCCChhhcCCCCceEE--------Eeehhhhhhh-------CCCCCEEEEeCCCCC---EEEE
Confidence                    110    112356788888776653        8899999863       899999999998887   6799


Q ss_pred             EecCCCEEEEeecCCccCc
Q psy12875        279 EHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       279 ~~~~~p~~GvQFHPE~~~~  297 (308)
                      ++++ ++||+|||||++..
T Consensus       178 ~~~~-~~~gvQfHPE~~~~  195 (242)
T PRK07567        178 RVGE-NVYATQFHPELDAD  195 (242)
T ss_pred             EeCC-CEEEEEeCCcCCHH
Confidence            9875 69999999999854

>PRK13566 anthranilate synthase; Provisional

Probab=99.89  E-value=1.1e-22  Score=205.67  Aligned_cols=171  Identities=20%  Similarity=0.328  Sum_probs=122.9

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF  118 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~  118 (308)
                      +.++++ ...+.++|++.|+++.++++..+.+.++  ..++||||+.||+.+  +. ++     .+.++++.+.++  ++
T Consensus       533 D~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~--~~~~DgVVLsgGpgs--p~-d~-----~~~~lI~~a~~~--~i  599 (720)
T PRK13566        533 DHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLD--RVNPDLVVLSPGPGR--PS-DF-----DCKATIDAALAR--NL  599 (720)
T ss_pred             ECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhh--hcCCCEEEECCCCCC--hh-hC-----CcHHHHHHHHHC--CC
Confidence            445556 4588999999999999999876544332  247999999777532  21 11     245666667764  49


Q ss_pred             cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ||||||+|||+|+.+ +||++.+...                               |                      
T Consensus       600 PILGIClG~QlLa~a-lGG~V~~~~~-------------------------------~----------------------  625 (720)
T PRK13566        600 PIFGVCLGLQAIVEA-FGGELGQLAY-------------------------------P----------------------  625 (720)
T ss_pred             cEEEEehhHHHHHHH-cCCEEEECCC-------------------------------C----------------------
Confidence            999999999999999 9998743110                               0                      


Q ss_pred             CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875        199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV  278 (308)
Q Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai  278 (308)
                      .+|....+.+       ..+++||++++.++.        ++++|++.+....     +|++++++|+++++.   |+++
T Consensus       626 ~~G~~~~V~v-------~~~~~Lf~~lp~~~~--------v~~~Hs~~v~~~~-----Lp~~~~vlA~s~dg~---V~ai  682 (720)
T PRK13566        626 MHGKPSRIRV-------RGPGRLFSGLPEEFT--------VGRYHSLFADPET-----LPDELLVTAETEDGV---IMAI  682 (720)
T ss_pred             ccCCceEEEE-------CCCCchhhcCCCCCE--------EEEecceeEeecc-----CCCceEEEEEeCCCc---EEEE
Confidence            0111111211       124578888877665        4999999886433     899999999998875   8899


Q ss_pred             EecCCCEEEEeecCCccCccc
Q psy12875        279 EHKEYPIVGIQFHPEKNAYEW  299 (308)
Q Consensus       279 ~~~~~p~~GvQFHPE~~~~~~  299 (308)
                      +++++|+||+|||||+..+..
T Consensus       683 ~~~~~pi~GVQFHPE~i~t~~  703 (720)
T PRK13566        683 EHKTLPVAAVQFHPESIMTLG  703 (720)
T ss_pred             EECCCCEEEEeccCeeCCcCC
Confidence            999889999999999988743

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.89  E-value=1.1e-22  Score=181.50  Aligned_cols=160  Identities=18%  Similarity=0.177  Sum_probs=110.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      .+.++|++.|.++.++....+. .++..++++||+|++||+.+++.   ...+...+.++++++.+.  ++|+||||+|+
T Consensus        23 ~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d---~~~wi~~~~~~i~~~~~~--~~PvLGIC~G~   96 (239)
T PRK06490         23 RVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSAND---PDDFIRREIDWISVPLKE--NKPFLGICLGA   96 (239)
T ss_pred             HHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCC---CchHHHHHHHHHHHHHHC--CCCEEEECHhH
Confidence            5688999999988877654332 22334778999999999865544   334555677888888874  49999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.+ +||++.+...             |.                +-+|+.            .+..          
T Consensus        97 Qlla~a-lGG~V~~~~~-------------G~----------------~e~G~~------------~i~~----------  124 (239)
T PRK06490         97 QMLARH-LGARVAPHPD-------------GR----------------VEIGYY------------PLRP----------  124 (239)
T ss_pred             HHHHHH-cCCEeecCCC-------------CC----------------CccceE------------EeEE----------
Confidence            999999 9998743210             00                001110            1111          


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG  287 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G  287 (308)
                              ....+++..++.          .++++|++.+.        +|++++++|+|++|.   ++++++++ ++||
T Consensus       125 --------~~~~~~~~~~~~----------~~~~~H~d~~~--------lP~~~~~LA~s~~~~---~qa~~~~~-~v~g  174 (239)
T PRK06490        125 --------TEAGRALMHWPE----------MVYHWHREGFD--------LPAGAELLATGDDFP---NQAFRYGD-NAWG  174 (239)
T ss_pred             --------CCCcccccCCCC----------EEEEECCcccc--------CCCCCEEEEeCCCCC---eEEEEeCC-CEEE
Confidence                    012223333332          24889998743        899999999999988   66999976 7999


Q ss_pred             EeecCCcc
Q psy12875        288 IQFHPEKN  295 (308)
Q Consensus       288 vQFHPE~~  295 (308)
                      +|||||++
T Consensus       175 ~QfHPE~~  182 (239)
T PRK06490        175 LQFHPEVT  182 (239)
T ss_pred             EeeCccCC
Confidence            99999998

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.89  E-value=1.1e-22  Score=175.32  Aligned_cols=165  Identities=21%  Similarity=0.273  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHcC---CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875         46 AASYVKNIEAAG---ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG  122 (308)
Q Consensus        46 ~~~~~~~l~~aG---~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG  122 (308)
                      ...+.++++++|   .++.++++.....  ...++++||||+|||..+.+.  ....+.+.+.++++.+.++  ++|++|
T Consensus        13 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~--~~~~~~~~~~~~i~~~~~~--~~pilg   86 (188)
T cd01741          13 PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDE--DDYPWLKKLKELIRQALAA--GKPVLG   86 (188)
T ss_pred             cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCc--cCChHHHHHHHHHHHHHHC--CCCEEE
Confidence            346789999999   5777777655432  235789999999999865411  1223445677778887774  499999


Q ss_pred             echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875        123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK  202 (308)
Q Consensus       123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~  202 (308)
                      ||+|+|+|+.+ +||++.+....                              +..|+-            ++       
T Consensus        87 iC~G~q~l~~~-lGG~v~~~~~~------------------------------~~~g~~------------~v-------  116 (188)
T cd01741          87 ICLGHQLLARA-LGGKVGRNPKG------------------------------WEIGWF------------PV-------  116 (188)
T ss_pred             ECccHHHHHHH-hCCEEecCCCc------------------------------ceeEEE------------EE-------
Confidence            99999999999 99987432110                              011110            11       


Q ss_pred             cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875        203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE  282 (308)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~  282 (308)
                          .+.    .....++++++++..+.        ++++|++.|..       +|++++++|+++++.   +++++.+ 
T Consensus       117 ----~~~----~~~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------lp~~~~~la~~~~~~---v~~~~~~-  169 (188)
T cd01741         117 ----TLT----EAGKADPLFAGLPDEFP--------VFHWHGDTVVE-------LPPGAVLLASSEACP---NQAFRYG-  169 (188)
T ss_pred             ----Eec----cccccCchhhcCCCcce--------EEEEeccChhh-------CCCCCEEeecCCCCC---cceEEec-
Confidence                110    01224567777766554        48999999974       899999999998887   6699987 


Q ss_pred             CCEEEEeecCC
Q psy12875        283 YPIVGIQFHPE  293 (308)
Q Consensus       283 ~p~~GvQFHPE  293 (308)
                      .++||+|||||
T Consensus       170 ~~~~g~QfHPE  180 (188)
T cd01741         170 DRALGLQFHPE  180 (188)
T ss_pred             CCEEEEccCch
Confidence            47999999999

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.89  E-value=2.2e-22  Score=202.99  Aligned_cols=172  Identities=19%  Similarity=0.286  Sum_probs=120.7

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF  118 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~  118 (308)
                      +.+++++ .++.++|++.|+.+.++++....+ +. ...++||||+.||+.+..+   +     +..+.++++.+.  ++
T Consensus       523 D~gds~~-~~l~~~L~~~G~~v~vv~~~~~~~-~~-~~~~~DgLILsgGPGsp~d---~-----~~~~~I~~~~~~--~i  589 (717)
T TIGR01815       523 DHEDSFV-HTLANYLRQTGASVTTLRHSHAEA-AF-DERRPDLVVLSPGPGRPAD---F-----DVAGTIDAALAR--GL  589 (717)
T ss_pred             ECCChhH-HHHHHHHHHCCCeEEEEECCCChh-hh-hhcCCCEEEEcCCCCCchh---c-----ccHHHHHHHHHC--CC
Confidence            3445664 588999999999999888764432 22 1357999999777533221   1     334556666664  49


Q ss_pred             cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ||||||+|||+|+.+ +||++.+..                               .|..                    
T Consensus       590 PvLGICLG~QlLa~a-~GG~V~~~~-------------------------------~p~~--------------------  617 (717)
T TIGR01815       590 PVFGVCLGLQGMVEA-FGGALDVLP-------------------------------EPVH--------------------  617 (717)
T ss_pred             CEEEECHHHHHHhhh-hCCEEEECC-------------------------------CCee--------------------
Confidence            999999999999999 999874211                               0111                    


Q ss_pred             CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875        199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV  278 (308)
Q Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai  278 (308)
                        |....+..       ...+++|.+++..+.        +++||++.+....     +|++++++|+++++.   ++|+
T Consensus       618 --G~~~~V~~-------~~~~~Lf~~lp~~~~--------v~~~HS~~~~~~~-----LP~~~~vlA~s~d~~---v~Ai  672 (717)
T TIGR01815       618 --GKASRIRV-------LGPDALFAGLPERLT--------VGRYHSLFARRDR-----LPAELTVTAESADGL---IMAI  672 (717)
T ss_pred             --CcceEEEE-------CCCChhhhcCCCCCE--------EEEECCCCccccc-----CCCCeEEEEEeCCCc---EEEE
Confidence              11111111       124568888877665        4999999875432     899999999997765   8899


Q ss_pred             EecCCCEEEEeecCCccCcccC
Q psy12875        279 EHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       279 ~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                      ++++.|+||+|||||+..++.|
T Consensus       673 ~~~~~~i~GVQFHPEsi~T~sg  694 (717)
T TIGR01815       673 EHRRLPLAAVQFHPESIMTLDG  694 (717)
T ss_pred             EECCCCEEEEEeCCeeCCccCc
Confidence            9999899999999999877654

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.88  E-value=6e-22  Score=176.31  Aligned_cols=166  Identities=20%  Similarity=0.220  Sum_probs=113.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      ++.++|++.|..+.+++....+. ....+.++||||++||+.+.... ....+...+.++++++.+.+  +|+||||+|+
T Consensus        18 ~i~~~L~~~g~~~~v~~~~~~~~-~~~~~~~~d~lii~Ggp~~~~d~-~~~p~~~~~~~~i~~~~~~~--~PvlGIC~G~   93 (234)
T PRK07053         18 SFEQVLGARGYRVRYVDVGVDDL-ETLDALEPDLLVVLGGPIGVYDD-ELYPFLAPEIALLRQRLAAG--LPTLGICLGA   93 (234)
T ss_pred             HHHHHHHHCCCeEEEEecCCCcc-CCCCccCCCEEEECCCCCCCCCC-CcCCcHHHHHHHHHHHHHCC--CCEEEECccH
Confidence            45789999999988887643321 11245689999999998655432 11234456778888888754  9999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.+ +||++.+..                               .+-+|+-            ++...         
T Consensus        94 Qlla~a-lGg~V~~~~-------------------------------~~e~G~~------------~i~~t---------  120 (234)
T PRK07053         94 QLIARA-LGARVYPGG-------------------------------QKEIGWA------------PLTLT---------  120 (234)
T ss_pred             HHHHHH-cCCcEecCC-------------------------------CCeEeEE------------EEEEe---------
Confidence            999999 999874210                               0111221            12111         


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG  287 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G  287 (308)
                            +....+++. +++..+.        ++++|++.+.        +|++++++|+|+.|.   +++++.++ ++||
T Consensus       121 ------~~g~~~pl~-~~~~~~~--------~~~~H~d~~~--------lP~ga~~La~s~~~~---~qaf~~g~-~~~g  173 (234)
T PRK07053        121 ------DAGRASPLR-HLGAGTP--------VLHWHGDTFD--------LPEGATLLASTPACR---HQAFAWGN-HVLA  173 (234)
T ss_pred             ------ccccCChhh-cCCCcce--------EEEEeCCEEe--------cCCCCEEEEcCCCCC---eeEEEeCC-CEEE
Confidence                  111234443 3444333        4889998875        899999999999988   55999864 7999


Q ss_pred             EeecCCccCc
Q psy12875        288 IQFHPEKNAY  297 (308)
Q Consensus       288 vQFHPE~~~~  297 (308)
                      +|||||++..
T Consensus       174 ~QfHpE~~~~  183 (234)
T PRK07053        174 LQFHPEARED  183 (234)
T ss_pred             EeeCccCCHH
Confidence            9999999854

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.88  E-value=1.4e-22  Score=177.53  Aligned_cols=180  Identities=22%  Similarity=0.327  Sum_probs=105.7

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHH-HHHcCCCccEEEe
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDK-INEEGVTFPVLGV  123 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~-~~~~g~~~PvlGI  123 (308)
                      .++.++|++.|+++.+. +..+.+    .++++||||+||+++...    +....+  .+.+.+++ +.+.  ++|+|||
T Consensus        15 ~s~~~al~~~g~~~~v~-~~~~~~----~l~~~d~lIlpG~~~~~~----~~~~l~~~~~~~~~~~~~~~~--~~PvlGi   83 (209)
T PRK13146         15 RSAAKALERAGAGADVV-VTADPD----AVAAADRVVLPGVGAFAD----CMRGLRAVGLGEAVIEAVLAA--GRPFLGI   83 (209)
T ss_pred             HHHHHHHHHcCCCccEE-EECCHH----HhcCCCEEEECCCCcHHH----HHHHHHHCCcHHHHHHHHHhC--CCcEEEE
Confidence            57889999999854222 223333    468999999999864211    111112  12333333 3443  4999999


Q ss_pred             chhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccc
Q psy12875        124 CLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKV  203 (308)
Q Consensus       124 C~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~  203 (308)
                      |+|||+|+.++.++...          .++.+.+|......   -.....+.|.+|                        
T Consensus        84 C~G~q~l~~~~~e~~~~----------~glg~l~g~v~~~~---~~~~~~~~p~~G------------------------  126 (209)
T PRK13146         84 CVGMQLLFERGLEHGDT----------PGLGLIPGEVVRFQ---PDGPALKVPHMG------------------------  126 (209)
T ss_pred             CHHHHHHhhcccccCCC----------CCcceEeEEEEEcC---CCCCCCccCccC------------------------
Confidence            99999999874433211          12334333221100   000001233333                        


Q ss_pred             ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875        204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY  283 (308)
Q Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~  283 (308)
                          |+....  .+++++|+++++.+.        ++++|++.+..       .+ +..++|+++.+. + ++++..+ .
T Consensus       127 ----~~~v~~--~~~~~lf~~~~~~~~--------v~~~Hs~~v~~-------~~-~~~~la~s~~~~-~-~~a~~~~-~  181 (209)
T PRK13146        127 ----WNTVDQ--TRDHPLFAGIPDGAR--------FYFVHSYYAQP-------AN-PADVVAWTDYGG-P-FTAAVAR-D  181 (209)
T ss_pred             ----hHHeee--CCCChhccCCCCCCE--------EEEEeEEEEEc-------CC-CCcEEEEEcCCC-E-EEEEEec-C
Confidence                322211  246779999887665        49999999973       33 568899887654 2 5566544 5


Q ss_pred             CEEEEeecCCccCcccC
Q psy12875        284 PIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       284 p~~GvQFHPE~~~~~~~  300 (308)
                      ++||+|||||++ ++.|
T Consensus       182 ~i~GvQFHPE~s-~~~G  197 (209)
T PRK13146        182 NLFATQFHPEKS-QDAG  197 (209)
T ss_pred             CEEEEEcCCccc-HHHH
Confidence            899999999998 4444

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=3.6e-22  Score=197.21  Aligned_cols=172  Identities=22%  Similarity=0.286  Sum_probs=116.5

Q ss_pred             CCCccchHHHHHHHHHHcCCe-EEEE-EcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGAR-VVPI-LIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV  116 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~-~~~i-~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~  116 (308)
                      +++++|. .++++.|++.|.. +.++ +.+.+.+.+.  ..++||||++||+.+...   ..    ...+.++. ..  .
T Consensus         6 dn~dsft-~nl~~~l~~~g~~~v~~~~~~~~~~~~~~--~~~~d~vIlsgGP~~p~~---~~----~~~~li~~-~~--~   72 (534)
T PRK14607          6 DNYDSFT-YNIYQYIGELGPEEIEVVRNDEITIEEIE--ALNPSHIVISPGPGRPEE---AG----ISVEVIRH-FS--G   72 (534)
T ss_pred             ECchhHH-HHHHHHHHHcCCCeEEEECCCCCCHHHHH--hcCCCEEEECCCCCChhh---CC----ccHHHHHH-hh--c
Confidence            4577886 4789999999986 4444 3333333221  236899999999743221   11    12333333 33  3


Q ss_pred             CccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        117 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       117 ~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      ++||||||+|||+|+.+ +||++.+....                                                   
T Consensus        73 ~~PvLGIClG~QlLa~a-~Gg~V~~~~~~---------------------------------------------------  100 (534)
T PRK14607         73 KVPILGVCLGHQAIGYA-FGGKIVHAKRI---------------------------------------------------  100 (534)
T ss_pred             CCCEEEEcHHHHHHHHH-cCCeEecCCcc---------------------------------------------------
Confidence            48999999999999999 99987432100                                                   


Q ss_pred             ccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEE
Q psy12875        197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVS  276 (308)
Q Consensus       197 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~  276 (308)
                        .+|....+.+        ..+.+|++++..+.        ++++|++.+....     +|++++++|+++++.   |+
T Consensus       101 --~~G~~~~v~~--------~~~~lf~~~~~~~~--------v~~~Hs~~v~~~~-----lp~~~~vlA~s~d~~---i~  154 (534)
T PRK14607        101 --LHGKTSPIDH--------NGKGLFRGIPNPTV--------ATRYHSLVVEEAS-----LPECLEVTAKSDDGE---IM  154 (534)
T ss_pred             --ccCCceeEEE--------CCCcchhcCCCCcE--------Eeeccchheeccc-----CCCCeEEEEEcCCCC---EE
Confidence              0111111111        24568888776554        4899999986432     899999999998887   88


Q ss_pred             EEEecCCCEEEEeecCCccCcccCC
Q psy12875        277 TVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       277 ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      +++++++|+||+|||||+..+++|.
T Consensus       155 a~~~~~~pi~GvQFHPE~~~t~~g~  179 (534)
T PRK14607        155 GIRHKEHPIFGVQFHPESILTEEGK  179 (534)
T ss_pred             EEEECCCCEEEEEeCCCCCCChhHH
Confidence            9999999999999999998887764

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=3.2e-22  Score=196.52  Aligned_cols=172  Identities=15%  Similarity=0.183  Sum_probs=116.6

Q ss_pred             CCCCccchHHHHHHHHHHcCCeEEEEEcCCChh-HHHHh-cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875         38 YPNYTSYIAASYVKNIEAAGARVVPILIGQDRE-YYAEI-LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEG  115 (308)
Q Consensus        38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~-~~~~~-l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g  115 (308)
                      .+++++|. ..+++.|++.|..+.+++.+.... .++.. ..++|+||+.||+.+..+   . ....++++.    .+  
T Consensus         7 IDn~dsft-~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d---~-~~~~~i~~~----~~--   75 (531)
T PRK09522          7 LDNIDSFT-YNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSE---A-GCMPELLTR----LR--   75 (531)
T ss_pred             EeCCChHH-HHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhh---C-CCCHHHHHH----Hh--
Confidence            35677885 578999999999988887543211 12222 125789999888643221   1 111223322    23  


Q ss_pred             CCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcc
Q psy12875        116 VTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDT  195 (308)
Q Consensus       116 ~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v  195 (308)
                      .++||||||+|||+|+.+ +||++.+...        ..                                         
T Consensus        76 ~~iPILGIClG~QlLa~a-~GG~V~~~~~--------~~-----------------------------------------  105 (531)
T PRK09522         76 GKLPIIGICLGHQAIVEA-YGGYVGQAGE--------IL-----------------------------------------  105 (531)
T ss_pred             cCCCEEEEcHHHHHHHHh-cCCEEEeCCc--------ee-----------------------------------------
Confidence            349999999999999999 9998753210        00                                         


Q ss_pred             cccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEE
Q psy12875        196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFV  275 (308)
Q Consensus       196 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v  275 (308)
                          +|....+.+        .+..+|.+++..+.        +++||++.+..       +|++++++|++ ++.   +
T Consensus       106 ----~G~~~~i~~--------~~~~lf~~~~~~~~--------v~~~Hs~~v~~-------lP~~l~vlA~s-d~~---v  154 (531)
T PRK09522        106 ----HGKASSIEH--------DGQAMFAGLTNPLP--------VARYHSLVGSN-------IPAGLTINAHF-NGM---V  154 (531)
T ss_pred             ----eeeEEEEee--------cCCccccCCCCCcE--------EEEehheeccc-------CCCCcEEEEec-CCC---E
Confidence                111111211        24458888876665        49999999863       89999999974 444   8


Q ss_pred             EEEEecCCCEEEEeecCCccCcccCC
Q psy12875        276 STVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       276 ~ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++++|+||+|||||+..|++|.
T Consensus       155 ~ai~~~~~~i~GVQFHPEs~~T~~G~  180 (531)
T PRK09522        155 MAVRHDADRVCGFQFHPESILTTQGA  180 (531)
T ss_pred             EEEEECCCCEEEEEecCccccCcchH
Confidence            89999999999999999999999985

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.88  E-value=2.7e-22  Score=174.45  Aligned_cols=175  Identities=24%  Similarity=0.361  Sum_probs=108.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch-hHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY-ADAGRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~-~~~~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .+..++|++.|+.+.+++.   .+    .++++|+|++|||+.. ..  .. .-......+.++++.+++  +||||||+
T Consensus        12 ~~~~~~l~~~g~~v~v~~~---~~----~l~~~d~iiipG~~~~-~~--~~~~~~~~~~~~~i~~~~~~~--~pilGiC~   79 (198)
T cd01748          12 RSVANALERLGAEVIITSD---PE----EILSADKLILPGVGAF-GD--AMANLRERGLIEALKEAIASG--KPFLGICL   79 (198)
T ss_pred             HHHHHHHHHCCCeEEEEcC---hH----HhccCCEEEECCCCcH-HH--HHHHHHHcChHHHHHHHHHCC--CcEEEECH
Confidence            4678999999999888763   12    3678999999997531 00  00 001124567778877754  99999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc---c
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC---K  202 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g---~  202 (308)
                      |||+|+.++.+|....          .+++.+|                                   ++.+.+++   +
T Consensus        80 G~q~l~~~~~~g~~~~----------~lg~~~g-----------------------------------~v~~~~~~~~~~  114 (198)
T cd01748          80 GMQLLFESSEEGGGTK----------GLGLIPG-----------------------------------KVVRFPASEGLK  114 (198)
T ss_pred             HHHHhccccccCCCCC----------CCCCcce-----------------------------------EEEECCCCCCce
Confidence            9999998843443211          1222222                                   33332211   1


Q ss_pred             cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875        203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE  282 (308)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~  282 (308)
                      ...+++.....  .+++++|++++..+.        ++++|++.+.        .++.+.++|+++++. + ++++. .+
T Consensus       115 ~~~~G~~~v~~--~~~~~lf~~l~~~~~--------v~~~Hs~~v~--------~~~~~~~la~s~~~~-~-~~~~~-~~  173 (198)
T cd01748         115 VPHMGWNQLEI--TKESPLFKGIPDGSY--------FYFVHSYYAP--------PDDPDYILATTDYGG-K-FPAAV-EK  173 (198)
T ss_pred             EEEeccceEEE--CCCChhhhCCCCCCe--------EEEEeEEEEe--------cCCcceEEEEecCCC-e-EEEEE-Ec
Confidence            11222221111  246678888877654        4899999986        344577899887654 3 33443 34


Q ss_pred             CCEEEEeecCCccCcccC
Q psy12875        283 YPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       283 ~p~~GvQFHPE~~~~~~~  300 (308)
                      .++||+|||||++ ++.|
T Consensus       174 ~~i~GvQFHPE~~-~~~g  190 (198)
T cd01748         174 DNIFGTQFHPEKS-GKAG  190 (198)
T ss_pred             CCEEEEECCCccc-cHhH
Confidence            5899999999998 4444

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.88  E-value=7.7e-22  Score=201.50  Aligned_cols=180  Identities=20%  Similarity=0.274  Sum_probs=121.9

Q ss_pred             CCCCccchHHHHHHHHHHc-CCeEEEEEcCCC-hhHHHH---hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875         38 YPNYTSYIAASYVKNIEAA-GARVVPILIGQD-REYYAE---ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN  112 (308)
Q Consensus        38 ~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~~~-~~~~~~---~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~  112 (308)
                      .+++|||.. ++++.|++. |..+++++.+.. .+++..   .+..+|+|||.||+-  .|.  .........+.+.++ 
T Consensus        87 IDnyDSfTy-NL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG--~P~--~~~d~Gi~~~~i~~~-  160 (918)
T PLN02889         87 IDNYDSYTY-NIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPG--SPT--CPADIGICLRLLLEC-  160 (918)
T ss_pred             EeCCCchHH-HHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCC--Ccc--chHHHHHHHHHHHHh-
Confidence            467889964 688889887 999888887642 223322   145789999977762  231  111111123333332 


Q ss_pred             HcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhC
Q psy12875        113 EEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSN  192 (308)
Q Consensus       113 ~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G  192 (308)
                         .++||||||+|||+|+.+ +||++.+..                                                 
T Consensus       161 ---~~iPILGICLGhQ~i~~~-~Gg~V~~~~-------------------------------------------------  187 (918)
T PLN02889        161 ---RDIPILGVCLGHQALGYV-HGARIVHAP-------------------------------------------------  187 (918)
T ss_pred             ---CCCcEEEEcHHHHHHHHh-cCceEEeCC-------------------------------------------------
Confidence               238888888888888888 888763211                                                 


Q ss_pred             CcccccCCcccceeeecccccCCCCCCcCccCCCh----hHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEec
Q psy12875        193 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPS----KYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSK  268 (308)
Q Consensus       193 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~  268 (308)
                          ...||++..+.+        .++.+|++++.    .+.        +.+||+..|++..     +|++++++|+++
T Consensus       188 ----~~~HG~~s~I~h--------~~~~lF~glp~~~~~~f~--------v~RYHSL~v~~~~-----lP~~L~~~A~t~  242 (918)
T PLN02889        188 ----EPVHGRLSEIEH--------NGCRLFDDIPSGRNSGFK--------VVRYHSLVIDAES-----LPKELVPIAWTS  242 (918)
T ss_pred             ----CceeeeeeeEee--------cCchhhcCCCcCCCCCce--------EEeCCCcccccCC-----CCCceEEEEEEC
Confidence                011444444443        25669999986    354        4899999997543     889999999875


Q ss_pred             CCC--------------------------------------------------ceEEEEEEecCCCEEEEeecCCccCcc
Q psy12875        269 YKS--------------------------------------------------WEFVSTVEHKEYPIVGIQFHPEKNAYE  298 (308)
Q Consensus       269 ~~~--------------------------------------------------~~~v~ai~~~~~p~~GvQFHPE~~~~~  298 (308)
                      +.+                                                  ...+||++|+.+|+||||||||+..++
T Consensus       243 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi~t~  322 (918)
T PLN02889        243 SSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESIATC  322 (918)
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCccccCc
Confidence            411                                                  026999999999999999999999998


Q ss_pred             cCC
Q psy12875        299 WTE  301 (308)
Q Consensus       299 ~~~  301 (308)
                      +|.
T Consensus       323 ~G~  325 (918)
T PLN02889        323 YGR  325 (918)
T ss_pred             hhH
Confidence            874

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.88  E-value=5.6e-22  Score=176.35  Aligned_cols=198  Identities=18%  Similarity=0.196  Sum_probs=111.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHH---HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYY---AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~---~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      ++..+..+.+..+.+++++.+..+.   +..++.+|||+++||+..  +   .   .....+.++.+.+.  ++|+||||
T Consensus        22 ~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~--~---~---~~~~~~~i~~~~~~--~~PvlGIC   91 (235)
T cd01746          22 ALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGI--R---G---VEGKILAIKYAREN--NIPFLGIC   91 (235)
T ss_pred             HHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCC--c---c---hhhHHHHHHHHHHC--CceEEEEE
Confidence            3444444456677777665443222   246789999999999732  1   1   12445566666764  59999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|||+|+.+ +||++....+....     ...++...|.. ..+. ..     .+.+        ..|++.+.    ...
T Consensus        92 lG~Q~l~~~-~g~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~-~~-----~~~~--------~~~~~~rl----~~h  146 (235)
T cd01746          92 LGMQLAVIE-FARNVLGLPDANST-----EFDPDTPHPVV-DLMP-EQ-----KGVK--------DLGGTMRL----GAY  146 (235)
T ss_pred             hHHHHHHHH-HHHHhcCCccCCcc-----ccCCCCCCCEE-EECc-cc-----cccc--------ccCccccc----Cce
Confidence            999999999 99886432221100     00111111100 0000 00     0000        00000000    001


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY  283 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~  283 (308)
                      .+.+       .+++.+.+-++        ++. .++++|+++|+++.+... +.++++++|++.+.+  +|+++|.+++
T Consensus       147 ~v~i-------~~~s~l~~~~g--------~~~~~~n~~H~~~v~~~~~~~~-~~~~l~v~a~~~ddg--~ieaie~~~~  208 (235)
T cd01746         147 PVIL-------KPGTLAHKYYG--------KDEVEERHRHRYEVNPEYVDEL-EEAGLRFSGTDPDGG--LVEIVELPDH  208 (235)
T ss_pred             EEEE-------CCCChHHHHhC--------CCEEEEecCcccccCHHHHHHH-hhCCeEEEEEeCCCC--eEEEEEcCCC
Confidence            1111       23444443332        222 368899999987655321 378999999997433  5889999999


Q ss_pred             CEE-EEeecCCccCcc
Q psy12875        284 PIV-GIQFHPEKNAYE  298 (308)
Q Consensus       284 p~~-GvQFHPE~~~~~  298 (308)
                      ||+ |+|||||.....
T Consensus       209 pf~lgvQ~HPE~~~~~  224 (235)
T cd01746         209 PFFVGTQFHPEFKSRP  224 (235)
T ss_pred             CcEEEEECCCCCcCCC
Confidence            987 999999987643

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.88  E-value=2.9e-21  Score=180.61  Aligned_cols=158  Identities=20%  Similarity=0.351  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      +..+++++|++.|+.++++|++.+.+++..  .++|||+++||+.+  +.    + .....+.++++.+  . +|+||||
T Consensus       177 ~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~DGIiLsgGPgd--p~----~-~~~~~~~i~~~~~--~-~PvlGIC  244 (354)
T PRK12838        177 YKKSILRSLSKRGCKVTVLPYDTSLEEIKN--LNPDGIVLSNGPGD--PK----E-LQPYLPEIKKLIS--S-YPILGIC  244 (354)
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCCHHHHhh--cCCCEEEEcCCCCC--hH----H-hHHHHHHHHHHhc--C-CCEEEEC
Confidence            567899999999999999998766444432  37999999999742  21    1 1234556666654  3 8999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|||+|+.+ +||++.+...         .+                                            +|...
T Consensus       245 lG~QlLa~a-~Gg~v~kl~~---------gh--------------------------------------------~G~~h  270 (354)
T PRK12838        245 LGHQLIALA-LGADTEKLPF---------GH--------------------------------------------RGANH  270 (354)
T ss_pred             HHHHHHHHH-hCCEEecCCC---------Cc--------------------------------------------cCCce
Confidence            999999999 9998753211         00                                            01111


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeEEEEEe-cCCCceEEEEEEecC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWNILTLS-KYKSWEFVSTVEHKE  282 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~via~s-~~~~~~~v~ai~~~~  282 (308)
                      .+..       ...+..+               .+.++|+++|.+.+     ++ .++++.+.+ .|+.   |+|+++++
T Consensus       271 pV~~-------~~~~~~~---------------~ts~~H~~aV~~~s-----l~~~~l~v~a~~~~Dg~---Veai~~~~  320 (354)
T PRK12838        271 PVID-------LTTGRVW---------------MTSQNHGYVVDEDS-----LDGTPLSVRFFNVNDGS---IEGLRHKK  320 (354)
T ss_pred             EEEE-------CCCCeEE---------------EeccchheEecccc-----cCCCCcEEEEEECCCCe---EEEEEECC
Confidence            1110       0011111               13679999998644     55 458999886 4544   88999999


Q ss_pred             CCEEEEeecCCccCcc
Q psy12875        283 YPIVGIQFHPEKNAYE  298 (308)
Q Consensus       283 ~p~~GvQFHPE~~~~~  298 (308)
                      +|+||||||||+...+
T Consensus       321 ~pi~gVQfHPE~~~gp  336 (354)
T PRK12838        321 KPVLSVQFHPEAHPGP  336 (354)
T ss_pred             CCEEEEEeCCCCCCCC
Confidence            9999999999997654

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.88  E-value=1.6e-21  Score=168.39  Aligned_cols=162  Identities=20%  Similarity=0.241  Sum_probs=105.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      ++.++|+.+|++++.++.   .    ..++++|||++|||......   .......+.++++++.+++  +||+|||+|+
T Consensus        15 ~~~~~l~~~g~~~~~~~~---~----~~l~~~dgiii~GG~~~~~~---~~~~~~~~~~~i~~~~~~g--~PilGIC~G~   82 (189)
T PRK13525         15 EHLAALEALGAEAVEVRR---P----EDLDEIDGLILPGGESTTMG---KLLRDFGLLEPLREFIASG--LPVFGTCAGM   82 (189)
T ss_pred             HHHHHHHHCCCEEEEeCC---h----hHhccCCEEEECCCChHHHH---HHHHhccHHHHHHHHHHCC--CeEEEECHHH
Confidence            445789999999988763   2    24678999999999632110   1112234567788888754  9999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.+ +||...          ..+++.|+                                   ++.+.+.+.  .++
T Consensus        83 QlL~~~-~gg~~~----------~~lg~~~~-----------------------------------~v~~~~~g~--~~g  114 (189)
T PRK13525         83 ILLAKE-IEGYEQ----------EHLGLLDI-----------------------------------TVRRNAFGR--QVD  114 (189)
T ss_pred             HHHHhh-cccCCC----------CceeeEEE-----------------------------------EEEEccCCC--cee
Confidence            999999 777521          12333322                                   222211111  011


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG  287 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G  287 (308)
                      .       ...+.++.+.++++.        ++++|++.|..       +|++++++|+++++    +.+++.+  ++||
T Consensus       115 ~-------~~~~~~~~~~~~~~~--------~~~~H~d~v~~-------lp~~~~vlA~~~~~----~~~~~~~--~~~g  166 (189)
T PRK13525        115 S-------FEAELDIKGLGEPFP--------AVFIRAPYIEE-------VGPGVEVLATVGGR----IVAVRQG--NILA  166 (189)
T ss_pred             e-------EEecccccCCCCCeE--------EEEEeCceeec-------cCCCcEEEEEcCCE----EEEEEeC--CEEE
Confidence            0       012345555554444        48999999974       89999999998543    3466654  6999


Q ss_pred             EeecCCccCc
Q psy12875        288 IQFHPEKNAY  297 (308)
Q Consensus       288 vQFHPE~~~~  297 (308)
                      +|||||++..
T Consensus       167 ~QfHPE~~~~  176 (189)
T PRK13525        167 TSFHPELTDD  176 (189)
T ss_pred             EEeCCccCCC
Confidence            9999999764

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=1.8e-21  Score=168.94  Aligned_cols=173  Identities=21%  Similarity=0.356  Sum_probs=103.0

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH-HHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG-RQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~-~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .|+.++|++.|+++.++.   +++    .+.++|+||+||+++..+.   +.... ..+.+.+++   .  ++||||||+
T Consensus        14 ~s~~~~l~~~g~~~~~v~---~~~----~~~~~d~iIlPG~G~~~~~---~~~l~~~~l~~~i~~---~--~~PilGICl   78 (196)
T PRK13170         14 SSVKFAIERLGYEPVVSR---DPD----VILAADKLFLPGVGTAQAA---MDQLRERELIDLIKA---C--TQPVLGICL   78 (196)
T ss_pred             HHHHHHHHHCCCeEEEEC---CHH----HhCCCCEEEECCCCchHHH---HHHHHHcChHHHHHH---c--CCCEEEECH
Confidence            367889999999888774   222    4678999999997642211   11111 123344433   2  489999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+.+ +++....         ..+.+.+|.....     .......|.+||.            +|..        
T Consensus        79 G~Qll~~~-~~~~~~~---------~~lg~~~g~v~~~-----~~~~~~~p~~G~~------------~v~~--------  123 (196)
T PRK13170         79 GMQLLGER-SEESGGV---------DCLGIIDGPVKKM-----TDFGLPLPHMGWN------------QVTP--------  123 (196)
T ss_pred             HHHHHhhh-cccCCCC---------CCcccccEEEEEC-----CCCCCCCCccccc------------eeEe--------
Confidence            99999999 5432100         1133333322210     0001234445542            2211        


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                                .+++++++++++++.        ++++|++.+          |++..++|+++++. .++++++.  .++
T Consensus       124 ----------~~~~~l~~~l~~~~~--------v~~~Hs~~l----------p~~~~~la~s~~~~-~~~~~~~~--~~i  172 (196)
T PRK13170        124 ----------QAGHPLFQGIEDGSY--------FYFVHSYAM----------PVNEYTIAQCNYGE-PFSAAIQK--DNF  172 (196)
T ss_pred             ----------CCCChhhhCCCcCCE--------EEEECeeec----------CCCCcEEEEecCCC-eEEEEEEc--CCE
Confidence                      235678888876554        599999865          34456788877653 34445443  469


Q ss_pred             EEEeecCCccCcccCC
Q psy12875        286 VGIQFHPEKNAYEWTE  301 (308)
Q Consensus       286 ~GvQFHPE~~~~~~~~  301 (308)
                      ||+|||||++. +.|.
T Consensus       173 ~G~QFHPE~~~-~~G~  187 (196)
T PRK13170        173 FGVQFHPERSG-AAGA  187 (196)
T ss_pred             EEEECCCCCcc-cccH
Confidence            99999999995 5553

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.87  E-value=1.4e-21  Score=174.19  Aligned_cols=167  Identities=18%  Similarity=0.152  Sum_probs=113.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .|..+++++|.++......... .++..++++||||++||+.+.....+-..+.  ....++++++.+.  ++|++|||+
T Consensus        16 ~~~~~~~~~g~~~~~~~~~~g~-~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~--~~PvlGIC~   92 (235)
T PRK08250         16 AYLKWAENRGYDISYSRVYAGE-ALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKA--GKAVIGVCL   92 (235)
T ss_pred             HHHHHHHHCCCeEEEEEccCCC-CCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHc--CCCEEEECh
Confidence            4567888899887776544332 2222456899999999975432100001112  3456778888874  499999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |+|+|+.+ +||++.+...                               +-+|+.            +|...       
T Consensus        93 G~Qlla~a-lGg~V~~~~~-------------------------------~e~G~~------------~v~lt-------  121 (235)
T PRK08250         93 GAQLIGEA-LGAKYEHSPE-------------------------------KEIGYF------------PITLT-------  121 (235)
T ss_pred             hHHHHHHH-hCceeccCCC-------------------------------CceeEE------------EEEEc-------
Confidence            99999999 9998742210                               112222            22211       


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                              ...+.++++.++++.+.        ++++|++.+.        +|++++++|+|+.|.   +++++.++ ++
T Consensus       122 --------~~g~~d~l~~~~~~~~~--------v~~~H~d~~~--------lP~~a~~LA~s~~~~---~qa~~~~~-~~  173 (235)
T PRK08250        122 --------EAGLKDPLLSHFGSTLT--------VGHWHNDMPG--------LTDQAKVLATSEGCP---RQIVQYSN-LV  173 (235)
T ss_pred             --------cccccCchhhcCCCCcE--------EEEEecceec--------CCCCCEEEECCCCCC---ceEEEeCC-CE
Confidence                    11235678888877664        4889998653        899999999999998   55999875 69


Q ss_pred             EEEeecCCccC
Q psy12875        286 VGIQFHPEKNA  296 (308)
Q Consensus       286 ~GvQFHPE~~~  296 (308)
                      ||+|||||.+.
T Consensus       174 ~g~QfHPE~~~  184 (235)
T PRK08250        174 YGFQCHMEFTV  184 (235)
T ss_pred             EEEeecCcCCH
Confidence            99999999873

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.87  E-value=3.6e-21  Score=181.66  Aligned_cols=159  Identities=15%  Similarity=0.277  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      +..++++.|++.|+.++++|++.+.+++.  ..++|||+|+||+.|  +.     ......+.++++..   ++||||||
T Consensus       250 ~K~nIlr~L~~~G~~v~VvP~~~~~~ei~--~~~pDGIiLSnGPGD--P~-----~~~~~ie~ik~l~~---~iPIlGIC  317 (415)
T PLN02771        250 IKHNILRRLASYGCKITVVPSTWPASEAL--KMKPDGVLFSNGPGD--PS-----AVPYAVETVKELLG---KVPVFGIC  317 (415)
T ss_pred             hHHHHHHHHHHcCCeEEEECCCCCHHHHh--hcCCCEEEEcCCCCC--hh-----HhhHHHHHHHHHHh---CCCEEEEc
Confidence            45788999999999999999877654433  237999999999633  21     11234555555442   38999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|||+|+.+ +||++.+...         .+                                            +|.  
T Consensus       318 LGhQlLa~A-lGGkv~K~~~---------Gh--------------------------------------------~G~--  341 (415)
T PLN02771        318 MGHQLLGQA-LGGKTFKMKF---------GH--------------------------------------------HGG--  341 (415)
T ss_pred             HHHHHHHHh-cCCeEEECCC---------Cc--------------------------------------------ccc--
Confidence            999999999 9998753211         00                                            011  


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY  283 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~  283 (308)
                                   .+++.......+       ..+.++|+++|++.+     +|+++++++.+ .|+.   +++++++++
T Consensus       342 -------------n~pV~~~~~~~v-------~itsqnHg~aVd~~s-----Lp~~~~vt~~nlnDgt---vegi~~~~~  393 (415)
T PLN02771        342 -------------NHPVRNNRTGRV-------EISAQNHNYAVDPAS-----LPEGVEVTHVNLNDGS---CAGLAFPAL  393 (415)
T ss_pred             -------------eEEEEECCCCCE-------EEEecCHHHhhcccc-----CCCceEEEEEeCCCCc---EEEEEECCC
Confidence                         111111000111       125789999997654     88999999987 4655   789999999


Q ss_pred             CEEEEeecCCccCccc
Q psy12875        284 PIVGIQFHPEKNAYEW  299 (308)
Q Consensus       284 p~~GvQFHPE~~~~~~  299 (308)
                      |+||||||||....++
T Consensus       394 pi~gVQFHPEa~pgp~  409 (415)
T PLN02771        394 NVMSLQYHPEASPGPH  409 (415)
T ss_pred             CEEEEEcCCCCCCCCC
Confidence            9999999999977554

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.86  E-value=1.9e-21  Score=169.26  Aligned_cols=170  Identities=26%  Similarity=0.379  Sum_probs=103.8

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .++.+++++.|.+++.+.   +.+    .++++|+||+||++....   ..... ...+.+.++++.+.  ++||||||+
T Consensus        13 ~~~~~~l~~~g~~v~~~~---~~~----~l~~~d~lilpG~g~~~~---~~~~l~~~~~~~~i~~~~~~--~~PvlGiC~   80 (199)
T PRK13181         13 RSVANALKRLGVEAVVSS---DPE----EIAGADKVILPGVGAFGQ---AMRSLRESGLDEALKEHVEK--KQPVLGICL   80 (199)
T ss_pred             HHHHHHHHHCCCcEEEEc---ChH----HhccCCEEEECCCCCHHH---HHHHHHHCChHHHHHHHHHC--CCCEEEECH
Confidence            477889999999888773   222    357899999999863111   01111 11345667777774  499999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC--ccc
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS--CKV  203 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~--g~~  203 (308)
                      |+|+|+.+ .++...          .++++.++                                   ++.+.+.  ++.
T Consensus        81 G~Qll~~~-~~~~~~----------~glg~l~~-----------------------------------~v~~~~~~~~~~  114 (199)
T PRK13181         81 GMQLLFES-SEEGNV----------KGLGLIPG-----------------------------------DVKRFRSEPLKV  114 (199)
T ss_pred             hHHHhhhh-cccCCc----------CCcceEEE-----------------------------------EEEEcCCCCCCC
Confidence            99999998 432111          11322222                                   2222111  112


Q ss_pred             ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875        204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY  283 (308)
Q Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~  283 (308)
                      +.+++.....  ..++++|++++..+.        ++++|++.+.+       .+ .+.++|+++++. .++++++.  .
T Consensus       115 ~~~G~~~v~~--~~~~~lf~~l~~~~~--------~~~~Hs~~v~~-------~~-~~~~lA~s~~~~-~~~~~~~~--~  173 (199)
T PRK13181        115 PQMGWNSVKP--LKESPLFKGIEEGSY--------FYFVHSYYVPC-------ED-PEDVLATTEYGV-PFCSAVAK--D  173 (199)
T ss_pred             CccCcccccc--CCCChhHcCCCCCCE--------EEEeCeeEecc-------CC-cccEEEEEcCCC-EEEEEEEC--C
Confidence            2233321111  236778988876554        48999998853       33 356889887633 34556654  4


Q ss_pred             CEEEEeecCCcc
Q psy12875        284 PIVGIQFHPEKN  295 (308)
Q Consensus       284 p~~GvQFHPE~~  295 (308)
                      ++||+|||||++
T Consensus       174 ~i~GvQFHPE~~  185 (199)
T PRK13181        174 NIYAVQFHPEKS  185 (199)
T ss_pred             CEEEEECCCccC
Confidence            699999999987

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.86  E-value=6.6e-21  Score=179.34  Aligned_cols=158  Identities=15%  Similarity=0.300  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEech
Q psy12875         46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      ..++.++|++.|+++.++|++.+.+++..  .++|||+++||+.+  +. .    ..+..+.++++.+.  ++||||||+
T Consensus       203 k~ni~~~L~~~G~~v~vvp~~~~~~~i~~--~~~dgIilSgGPg~--p~-~----~~~~i~~i~~~~~~--~~PilGICl  271 (382)
T CHL00197        203 KYNILRRLKSFGCSITVVPATSPYQDILS--YQPDGILLSNGPGD--PS-A----IHYGIKTVKKLLKY--NIPIFGICM  271 (382)
T ss_pred             HHHHHHHHHHCCCeEEEEcCCCCHHHHhc--cCCCEEEEcCCCCC--hh-H----HHHHHHHHHHHHhC--CCCEEEEcH
Confidence            45789999999999999998876554432  37999999999633  31 1    22345556666653  489999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+.+ +||++.+....         +                                      +      +    
T Consensus       272 GhQlLa~a-~Gg~v~k~~~G---------h--------------------------------------~------g----  293 (382)
T CHL00197        272 GHQILSLA-LEAKTFKLKFG---------H--------------------------------------R------G----  293 (382)
T ss_pred             HHHHHHHH-hCCEEeccCCC---------C--------------------------------------C------C----
Confidence            99999999 99987432110         0                                      0      0    


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCC-CeEEEEEe-cCCCceEEEEEEecCC
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTE-TWNILTLS-KYKSWEFVSTVEHKEY  283 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~-~~~via~s-~~~~~~~v~ai~~~~~  283 (308)
                                 ...++  ..+.++       ..+.++|++++.+++     +++ ++++++.+ +|+.   +++++++++
T Consensus       294 -----------~n~pv--~~~~~v-------~itsq~H~~~v~~~s-----v~~~~~~vt~~~~nDgt---vegi~h~~~  345 (382)
T CHL00197        294 -----------LNHPS--GLNQQV-------EITSQNHGFAVNLES-----LAKNKFYITHFNLNDGT---VAGISHSPK  345 (382)
T ss_pred             -----------CCEec--CCCCce-------EEeecchheEeeccc-----cCCCCcEEEEEECCCCC---EEEEEECCC
Confidence                       00000  011111       123578999998765     443 68888886 4554   789999999


Q ss_pred             CEEEEeecCCccCcccC
Q psy12875        284 PIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       284 p~~GvQFHPE~~~~~~~  300 (308)
                      |+||||||||+...++.
T Consensus       346 pi~gVQFHPE~~~gp~d  362 (382)
T CHL00197        346 PYFSVQYHPEASPGPHD  362 (382)
T ss_pred             CcEEEeeCCCCCCCCCC
Confidence            99999999999886654

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.86  E-value=2.9e-21  Score=169.09  Aligned_cols=186  Identities=22%  Similarity=0.331  Sum_probs=111.9

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .|.+++++..+.++..+.   +.+    .++++|+||+||+++. ..  .+... ...+.+.++++.++  ++|+||||+
T Consensus        13 ~s~~~al~~~~~~~~~~~---~~~----~l~~~d~iIlPG~g~~-~~--~~~~l~~~gl~~~i~~~~~~--~~pilGiC~   80 (210)
T PRK14004         13 HSCLKAVSLYTKDFVFTS---DPE----TIENSKALILPGDGHF-DK--AMENLNSTGLRSTIDKHVES--GKPLFGICI   80 (210)
T ss_pred             HHHHHHHHHcCCeEEEEC---CHH----HhccCCEEEECCCCch-HH--HHHHHHHcCcHHHHHHHHHc--CCCEEEECH
Confidence            477899999998877553   332    3578999999999842 11  12221 12566777777774  499999999


Q ss_pred             hhhHHHHHhcCCc-cccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        126 GFELILQVSNNDT-DFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       126 G~Qll~~~~~gg~-~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      |||+|+.+ ++.. ...+.    ....+|++.||.....     .....++|.+||+            ++...      
T Consensus        81 G~Q~l~~~-~~e~~~~~~~----~~~~Glg~~~~~v~~~-----~~~~~~~ph~Gw~------------~v~~~------  132 (210)
T PRK14004         81 GFQILFES-SEETNQGTKK----EQIEGLGYIKGKIKKF-----EGKDFKVPHIGWN------------RLQIR------  132 (210)
T ss_pred             hHHHHHHh-cccccCCCcC----cccCCcceeEEEEEEc-----CCCCCcCCccCcc------------cceec------
Confidence            99999998 4321 10000    0013466666643321     0011256777765            33221      


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP  284 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p  284 (308)
                                ...++++|++++..+.        ++++|++.+.        .++.+.+++.++..... ++++. .+.+
T Consensus       133 ----------~~~~~~lf~~l~~~~~--------v~~~HS~~~~--------~~~~l~~sa~~~~~g~~-~~a~~-~~~~  184 (210)
T PRK14004        133 ----------RKDKSKLLKGIGDQSF--------FYFIHSYRPT--------GAEGNAITGLCDYYQEK-FPAVV-EKEN  184 (210)
T ss_pred             ----------cCCCCccccCCCCCCE--------EEEeceeecC--------CCCcceEEEeeeECCEE-EEEEE-ecCC
Confidence                      0135668999887654        4999998543        12334455554442322 34444 3457


Q ss_pred             EEEEeecCCccCcccCC
Q psy12875        285 IVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       285 ~~GvQFHPE~~~~~~~~  301 (308)
                      +||+|||||++. +.|.
T Consensus       185 i~GvQFHPE~s~-~~G~  200 (210)
T PRK14004        185 IFGTQFHPEKSH-THGL  200 (210)
T ss_pred             EEEEeCCcccCc-hhHH
Confidence            999999999998 4653

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.85  E-value=8.8e-21  Score=165.21  Aligned_cols=168  Identities=18%  Similarity=0.253  Sum_probs=107.4

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH--HHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD--AGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~--~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      .++.++++..|..+..+.....     ..+.++|+|++|||+...     +.+  +...+.++++++.+++  +|+||||
T Consensus        17 ~~~~~~l~~~g~~~~~~~~~~~-----~~l~~~d~iii~GG~~~~-----~~~~~~~~~~~~~i~~~~~~~--~pilGIC   84 (200)
T PRK13527         17 DALKRALDELGIDGEVVEVRRP-----GDLPDCDALIIPGGESTT-----IGRLMKREGILDEIKEKIEEG--LPILGTC   84 (200)
T ss_pred             HHHHHHHHhcCCCeEEEEeCCh-----HHhccCCEEEECCCcHHH-----HHHHHhhccHHHHHHHHHHCC--CeEEEEC
Confidence            3677899999988777765432     246789999999996321     222  2224678888888754  9999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|+|+|+.+ +||..+...     ....+++.|+                                   ++.+.+.|...
T Consensus        85 ~G~Qll~~~-~gg~~v~~~-----~~~~lG~~~~-----------------------------------~v~~~~~g~~~  123 (200)
T PRK13527         85 AGLILLAKE-VGDDRVTKT-----EQPLLGLMDV-----------------------------------TVKRNAFGRQR  123 (200)
T ss_pred             HHHHHHHhh-hcCCccCCC-----CCceeeeeEE-----------------------------------EEeeccccCcc
Confidence            999999999 888432110     0112333322                                   12111111000


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP  284 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p  284 (308)
                      . .        .....++.+++..+.        ++++|++.+..       +|++++++|+++++.    ++++..  +
T Consensus       124 ~-~--------~~~~~~~~~~~~~~~--------~~~~H~~~v~~-------lp~~~~~la~~~~~~----~a~~~~--~  173 (200)
T PRK13527        124 D-S--------FEAEIDLSGLDGPFH--------AVFIRAPAITK-------VGGDVEVLAKLDDRI----VAVEQG--N  173 (200)
T ss_pred             c-c--------EEEeEeccccCCcce--------EEEEccccccc-------cCCCeEEEEEECCEE----EEEEEC--C
Confidence            0 0        012234566665554        38899998863       899999999987753    366643  6


Q ss_pred             EEEEeecCCccCc
Q psy12875        285 IVGIQFHPEKNAY  297 (308)
Q Consensus       285 ~~GvQFHPE~~~~  297 (308)
                      +||+|||||....
T Consensus       174 ~~g~QfHPE~~~~  186 (200)
T PRK13527        174 VLATAFHPELTDD  186 (200)
T ss_pred             EEEEEeCCCCCCC
Confidence            9999999997754

>PRK06186 hypothetical protein; Validated

Probab=99.85  E-value=3.4e-21  Score=169.02  Aligned_cols=192  Identities=16%  Similarity=0.179  Sum_probs=107.0

Q ss_pred             CccchHHHHHHHHHHc----CCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875         41 YTSYIAASYVKNIEAA----GARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV  116 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~  116 (308)
                      .|.|.  |+.++|+.+    +..+.+.+++++.-+-+..|+++|||++|||.-       + +-....+..++.+.+  +
T Consensus        14 ~daY~--Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg-------~-rg~~Gki~ai~~Are--~   81 (229)
T PRK06186         14 VTAHQ--AIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSP-------Y-RNDDGALTAIRFARE--N   81 (229)
T ss_pred             cHHHH--HHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCC-------c-ccHhHHHHHHHHHHH--c
Confidence            46675  778888766    467777777654322223688999999999941       1 112345666677777  5


Q ss_pred             CccEEEechhhhHHHHHhcC-CccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcc
Q psy12875        117 TFPVLGVCLGFELILQVSNN-DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDT  195 (308)
Q Consensus       117 ~~PvlGIC~G~Qll~~~~~g-g~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v  195 (308)
                      ++|+||||+|||+++..... +..+++....       .+.|....|.                               |
T Consensus        82 ~iP~LGIClGmQ~avIe~arnv~g~~dA~s~-------E~~~~~~~pv-------------------------------i  123 (229)
T PRK06186         82 GIPFLGTCGGFQHALLEYARNVLGWADAAHA-------ETDPEGDRPV-------------------------------I  123 (229)
T ss_pred             CCCeEeechhhHHHHHHHHhhhcCCcCCCcC-------CCCCCCCCCE-------------------------------E
Confidence            59999999999987665222 2222222111       1111111110                               0


Q ss_pred             cccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeeccccccCCCCCeEEEEEecCCCceE
Q psy12875        196 DFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEF  274 (308)
Q Consensus       196 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~  274 (308)
                      ..++ ......++.+..   .+++.+.+-+.        .+.. ..+.|+|.|+...-+.. ..++++++|+++|+.   
T Consensus       124 ~~~~-~~~~~~~h~v~l---~~~S~l~~iyg--------~~~i~erhrHryeVNs~h~q~i-~~~GL~vsa~s~DG~---  187 (229)
T PRK06186        124 APLS-CSLVEKTGDIRL---RPGSLIARAYG--------TLEIEEGYHCRYGVNPEFVAAL-ESGDLRVTGWDEDGD---  187 (229)
T ss_pred             EECc-cccccCceEEEE---CCCCHHHHHhC--------CCeeeeeccccEEECHHHHHHH-hcCCeEEEEEcCCCC---
Confidence            0000 000000111111   12443333222        2222 24556677764322211 368999999998876   


Q ss_pred             EEEEEecCCCE-EEEeecCCccCcc
Q psy12875        275 VSTVEHKEYPI-VGIQFHPEKNAYE  298 (308)
Q Consensus       275 v~ai~~~~~p~-~GvQFHPE~~~~~  298 (308)
                      |+|+|.+++|| +|||||||+....
T Consensus       188 iEaiE~~~hpf~lGVQwHPE~~s~~  212 (229)
T PRK06186        188 VRAVELPGHPFFVATLFQPERAALA  212 (229)
T ss_pred             EEEEEeCCCCcEEEEeCCCCccCCC
Confidence            77999998885 5999999987643

>KOG0026|consensus

Probab=99.85  E-value=1.7e-21  Score=158.82  Aligned_cols=129  Identities=22%  Similarity=0.366  Sum_probs=109.0

Q ss_pred             ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC----CcccceeeecccccCCCCCCcCcc
Q psy12875        152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK----SCKVQQVNLNLKFLPGAKRSSLFS  223 (308)
Q Consensus       152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~----~g~~~~~~~~~~~~~~~~~~~l~~  223 (308)
                      .|.++|||++|..    .+.++++..++|++|||.|.|.|-.++||+|.+..    ||+...+.+.-     ..+..+|+
T Consensus        66 ~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~-----~~~~G~f~  140 (223)
T KOG0026|consen   66 GLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDE-----KGEEGLFS  140 (223)
T ss_pred             eEEecCCCCCCccccchHHHHHHhCCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCC-----cccccccc
Confidence            5889999999983    45777889999999999999999999999999986    67777776631     12357999


Q ss_pred             CCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeEEEEEecCCCceEEEEEEecCCC-EEEEeecCCccCcccCC
Q psy12875        224 QVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWNILTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       224 ~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~via~s~~~~~~~v~ai~~~~~p-~~GvQFHPE~~~~~~~~  301 (308)
                      ++|..+.+        .+||+.+....+     +| +.++|+|+++++-   ||+.+|+.|. +-|+|||||+..+|.|-
T Consensus       141 g~~q~~~V--------~RYHSLa~~~sS-----lP~d~L~VTawTEnG~---iMgaRHkKY~~ieGVQfHPESIlteeGk  204 (223)
T KOG0026|consen  141 GLSNPFIV--------GRYHSLVIEKDS-----FPSDELEVTAWTEDGL---VMAARHRKYKHIQGVQFHPESIITTEGK  204 (223)
T ss_pred             CCCCCeEE--------Eeeeeeeeeccc-----CCccceeeeEeccCcE---EEeeeccccccccceeecchhhhhhhhH
Confidence            99988764        899999998766     66 8899999988874   9999999987 67999999999998874

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.85  E-value=1.4e-20  Score=164.01  Aligned_cols=173  Identities=22%  Similarity=0.338  Sum_probs=102.6

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHH-HHcCCCccEEEe
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKI-NEEGVTFPVLGV  123 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~-~~~g~~~PvlGI  123 (308)
                      .+..++|++.|+++.+++   +++    .+.++|+||+||+++.. +   ..+..+  .+.+.++++ ++  .++|||||
T Consensus        13 ~~v~~~l~~~g~~~~~~~---~~~----~l~~~d~lilPG~g~~~-~---~~~~l~~~~~~~~l~~~~~~--~~~pvlGi   79 (201)
T PRK13152         13 NSVAKAFEKIGAINFIAK---NPK----DLQKADKLLLPGVGSFK-E---AMKNLKELGFIEALKEQVLV--QKKPILGI   79 (201)
T ss_pred             HHHHHHHHHCCCeEEEEC---CHH----HHcCCCEEEECCCCchH-H---HHHHHHHcCcHHHHHHHHHh--CCCcEEEE
Confidence            477899999999877654   222    35679999999998421 1   111111  233444443 45  34999999


Q ss_pred             chhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccc
Q psy12875        124 CLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKV  203 (308)
Q Consensus       124 C~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~  203 (308)
                      |+|||+|+.++.+|...+.          +++.+|......    .....++|..|+                       
T Consensus        80 C~G~Q~l~~~~~~~~~~~~----------lg~~~g~v~~~~----~~~~~~~~~~g~-----------------------  122 (201)
T PRK13152         80 CLGMQLFLERGYEGGVCEG----------LGFIEGEVVKFE----EDLNLKIPHMGW-----------------------  122 (201)
T ss_pred             CHhHHHHhhcccccCCcCC----------cccccEEEEECC----CCCCCcCCccCe-----------------------
Confidence            9999999987455543221          333233221100    000001222222                       


Q ss_pred             ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875        204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY  283 (308)
Q Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~  283 (308)
                      ..+..       ..++++|++++.++.        ++++|++.+..       ++  ..+.+.++++. .++++++.  .
T Consensus       123 ~~v~~-------~~~~~l~~~l~~~~~--------~~~vHS~~v~~-------~~--~~v~a~~~~g~-~~~~a~~~--~  175 (201)
T PRK13152        123 NELEI-------LKQSPLYQGIPEKSD--------FYFVHSFYVKC-------KD--EFVSAKAQYGH-KFVASLQK--D  175 (201)
T ss_pred             EEEEE-------CCCChhhhCCCCCCe--------EEEEcccEeec-------CC--CcEEEEECCCC-EEEEEEec--C
Confidence            11111       246778888876554        48999999863       22  35677766654 35667774  3


Q ss_pred             CEEEEeecCCccC
Q psy12875        284 PIVGIQFHPEKNA  296 (308)
Q Consensus       284 p~~GvQFHPE~~~  296 (308)
                      ++||+|||||++.
T Consensus       176 ~i~GvQFHPE~~~  188 (201)
T PRK13152        176 NIFATQFHPEKSQ  188 (201)
T ss_pred             CEEEEeCCCeecC
Confidence            6999999999973

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.84  E-value=2.9e-20  Score=169.43  Aligned_cols=161  Identities=17%  Similarity=0.343  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      +..++.+.|.+.|+++.++|++.+.+++.+  .+.|||+++-|+-  +|     ...+..++.+++.+.+  .+|++|||
T Consensus       189 vK~nIlr~L~~rg~~vtVVP~~t~~eeIl~--~~pDGiflSNGPG--DP-----~~~~~~i~~ik~l~~~--~iPifGIC  257 (368)
T COG0505         189 VKRNILRELVKRGCRVTVVPADTSAEEILA--LNPDGIFLSNGPG--DP-----APLDYAIETIKELLGT--KIPIFGIC  257 (368)
T ss_pred             ccHHHHHHHHHCCCeEEEEcCCCCHHHHHh--hCCCEEEEeCCCC--Ch-----hHHHHHHHHHHHHhcc--CCCeEEEc
Confidence            667899999999999999999988765433  3799999988863  33     2345677778887774  37999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|+|+|+.| +|++.++.++         ++                                            +|   
T Consensus       258 LGHQllalA-~Ga~T~KmkF---------GH--------------------------------------------rG---  280 (368)
T COG0505         258 LGHQLLALA-LGAKTYKMKF---------GH--------------------------------------------RG---  280 (368)
T ss_pred             HHHHHHHHh-cCCceeeccc---------CC--------------------------------------------CC---
Confidence            999999999 9998753221         11                                            00   


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY  283 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~  283 (308)
                                  .++|.-+....++       .++.++|.|+|++++     +++..+++..+ .|+.   +++++++++
T Consensus       281 ------------~NhPV~dl~tgrv-------~ITSQNHGyaVd~~s-----~~~~~~vth~nlnDgT---vEGi~h~~~  333 (368)
T COG0505         281 ------------ANHPVKDLDTGRV-------YITSQNHGYAVDEDS-----LVETLKVTHVNLNDGT---VEGIRHKDL  333 (368)
T ss_pred             ------------CCcCcccccCCeE-------EEEecCCceecChhh-----cCCCceeEEEeCCCCC---ccceecCCC
Confidence                        1222222111211       246789999999875     44433677777 5666   669999999


Q ss_pred             CEEEEeecCCccCcccC
Q psy12875        284 PIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       284 p~~GvQFHPE~~~~~~~  300 (308)
                      |+|+||||||.++.+|-
T Consensus       334 P~fSVQ~HPEAsPGPhD  350 (368)
T COG0505         334 PAFSVQYHPEASPGPHD  350 (368)
T ss_pred             ceEEEccCCCCCCCCcc
Confidence            99999999999987653

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.84  E-value=5.6e-20  Score=160.15  Aligned_cols=173  Identities=26%  Similarity=0.416  Sum_probs=106.0

Q ss_pred             cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875         43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG  122 (308)
Q Consensus        43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG  122 (308)
                      .++ .++.++|+.+|+++.+++   +.+    .++++|||++|||+.  ..  +..+..+.+.+.++++.+++  +|+||
T Consensus        11 ~~~-~~~~~~l~~~G~~~~~~~---~~~----~~~~~d~iii~G~~~--~~--~~~~~~~~~~~~i~~~~~~~--~Pilg   76 (200)
T PRK13143         11 GNL-RSVSKALERAGAEVVITS---DPE----EILDADGIVLPGVGA--FG--AAMENLSPLRDVILEAARSG--KPFLG   76 (200)
T ss_pred             ccH-HHHHHHHHHCCCeEEEEC---CHH----HHccCCEEEECCCCC--HH--HHHHHHHHHHHHHHHHHHcC--CCEEE
Confidence            344 588999999999988774   222    457899999999752  11  12233345667778888754  99999


Q ss_pred             echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc-
Q psy12875        123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC-  201 (308)
Q Consensus       123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g-  201 (308)
                      ||+|+|+|+.++.+|+.++.          +.+.+|                                   ++.+.+++ 
T Consensus        77 IC~G~q~l~~~~~~g~~~~~----------lg~~~g-----------------------------------~v~~~~~~~  111 (200)
T PRK13143         77 ICLGMQLLFESSEEGGGVRG----------LGLFPG-----------------------------------RVVRFPAGV  111 (200)
T ss_pred             ECHHHHHHhhhhccCCCCCC----------cceeeE-----------------------------------EEEEcCCCC
Confidence            99999999987456654321          222222                                   22221110 


Q ss_pred             ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875        202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK  281 (308)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~  281 (308)
                      .....++.....  ..+++++++++...         ++++|++.+.        +++++.++|+++++. . ++++..+
T Consensus       112 ~~~~~g~~~v~~--~~~~~l~~~l~~~~---------~~~~Hs~~~~--------~~~~~~~la~~~~~~-~-~~~~~~~  170 (200)
T PRK13143        112 KVPHMGWNTVKV--VKDCPLFEGIDGEY---------VYFVHSYYAY--------PDDEDYVVATTDYGI-E-FPAAVCN  170 (200)
T ss_pred             CCCeecceEEEE--cCCChhhccCCCcE---------EEEEeeeeeC--------CCCcceEEEEEcCCC-E-EEEEEEc
Confidence            001111111100  13567777764322         3789998875        456688999987644 2 3344444


Q ss_pred             CCCEEEEeecCCccC
Q psy12875        282 EYPIVGIQFHPEKNA  296 (308)
Q Consensus       282 ~~p~~GvQFHPE~~~  296 (308)
                      + ++||+|||||++.
T Consensus       171 ~-~~~gvQfHPE~~~  184 (200)
T PRK13143        171 D-NVFGTQFHPEKSG  184 (200)
T ss_pred             C-CEEEEeCCCccch
Confidence            4 8999999999973

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.84  E-value=3.1e-20  Score=162.33  Aligned_cols=173  Identities=25%  Similarity=0.316  Sum_probs=107.6

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      ..+.++|++.|+.+..+.   +++    .++++||||+|||+...+.  ......+++.++++++.+.  ++|+||||+|
T Consensus        13 ~~i~~~l~~~G~~v~~~~---~~~----~l~~~d~iiipG~~~~~~~--~~~~~~~~~~~~i~~~~~~--~~pvlGIC~G   81 (205)
T PRK13141         13 RSVEKALERLGAEAVITS---DPE----EILAADGVILPGVGAFPDA--MANLRERGLDEVIKEAVAS--GKPLLGICLG   81 (205)
T ss_pred             HHHHHHHHHCCCeEEEEC---CHH----HhccCCEEEECCCCchHHH--HHHHHHcChHHHHHHHHHC--CCcEEEECHH
Confidence            577899999999988764   222    4678999999998631110  0111123567778887774  4899999999


Q ss_pred             hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc---cc
Q psy12875        127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC---KV  203 (308)
Q Consensus       127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g---~~  203 (308)
                      +|+|+....++..+          ..+++.                                   ++++.+.+++   ..
T Consensus        82 ~Qll~~~~~~~~~~----------~~lg~l-----------------------------------~g~v~~~~~~~~~~~  116 (205)
T PRK13141         82 MQLLFESSEEFGET----------EGLGLL-----------------------------------PGRVRRFPPEEGLKV  116 (205)
T ss_pred             HHHhhhccccCCCC----------CccceE-----------------------------------EEEEEEcCCCCCCcc
Confidence            99999872221111          011111                                   1233332110   11


Q ss_pred             ceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCC
Q psy12875        204 QQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEY  283 (308)
Q Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~  283 (308)
                      ...++.....  .+++++|++++..+.        ++++|++.+.        +++++.++|+++++ .+ +++++.. .
T Consensus       117 ~~~g~~~i~~--~~~~~l~~~l~~~~~--------v~~~Hs~~v~--------~~~~~~v~a~~~~~-~~-~~a~~~~-~  175 (205)
T PRK13141        117 PHMGWNQLEL--KKESPLLKGIPDGAY--------VYFVHSYYAD--------PCDEEYVAATTDYG-VE-FPAAVGK-D  175 (205)
T ss_pred             cEecCcccee--CCCChhhhCCCCCCE--------EEEECeeEec--------cCCcCeEEEEEeCC-cE-EEEEEec-C
Confidence            1222211111  236788888876554        3789999885        46778899988765 33 6677654 4


Q ss_pred             CEEEEeecCCccC
Q psy12875        284 PIVGIQFHPEKNA  296 (308)
Q Consensus       284 p~~GvQFHPE~~~  296 (308)
                      ++||+|||||+..
T Consensus       176 ~i~GvQfHPE~~~  188 (205)
T PRK13141        176 NVFGAQFHPEKSG  188 (205)
T ss_pred             CEEEEeCCCccch
Confidence            8999999999874

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.83  E-value=2.2e-20  Score=162.17  Aligned_cols=170  Identities=24%  Similarity=0.324  Sum_probs=100.3

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHH-HHHH-HHHHHcCCCccEEEec
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-LHLV-DKINEEGVTFPVLGVC  124 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~-~e~~-~~~~~~g~~~PvlGIC  124 (308)
                      .++.++|+..|+.+.+++.   ++    .++++|+||+||+++..+   .+ +..++. ++.+ +++.+.  ++||||||
T Consensus        12 ~~l~~~l~~~g~~v~v~~~---~~----~l~~~d~lii~G~~~~~~---~~-~~l~~~~~~~l~~~~~~~--~~pvlGiC   78 (196)
T TIGR01855        12 GSVKRALKRVGAEPVVVKD---SK----EAELADKLILPGVGAFGA---AM-ARLRENGLDLFVELVVRL--GKPVLGIC   78 (196)
T ss_pred             HHHHHHHHHCCCcEEEEcC---HH----HhccCCEEEECCCCCHHH---HH-HHHHHcCcHHHHHHHHhC--CCCEEEEC
Confidence            3678899999999888872   22    357899999999753111   11 111221 3334 656664  49999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      .|||+|+.++.+|..+          ..+++.+|                                   ++.+.++.+..
T Consensus        79 ~G~Qll~~~~~~~~~~----------~glg~~~~-----------------------------------~v~~~~~~~~~  113 (196)
T TIGR01855        79 LGMQLLFERSEEGGGV----------PGLGLIKG-----------------------------------NVVKLEARKVP  113 (196)
T ss_pred             HHHHHhhhccccCCCC----------CCcceeeE-----------------------------------EEEECCCCCCC
Confidence            9999999983333211          12333222                                   33322111122


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP  284 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p  284 (308)
                      .+++.....  ..+++||+++++.+.        ++++|++.+.+       .+ +. +++.++++. .+.++.+  +.+
T Consensus       114 ~~g~~~~~~--~~~~~l~~~l~~~~~--------v~~~Hs~~v~~-------~~-~~-~~a~~~~g~-~~~~~~~--~~~  171 (196)
T TIGR01855       114 HMGWNEVHP--VKESPLLNGIDEGAY--------FYFVHSYYAVC-------EE-EA-VLAYADYGE-KFPAAVQ--KGN  171 (196)
T ss_pred             cccCeeeee--CCCChHHhCCCCCCE--------EEEECeeEecC-------CC-Cc-EEEEEcCCc-EEEEEEe--cCC
Confidence            222221111  246678888877665        48999999863       23 43 566655433 2333333  447


Q ss_pred             EEEEeecCCccC
Q psy12875        285 IVGIQFHPEKNA  296 (308)
Q Consensus       285 ~~GvQFHPE~~~  296 (308)
                      +||+|||||++.
T Consensus       172 i~GvQFHPE~~~  183 (196)
T TIGR01855       172 IFGTQFHPEKSG  183 (196)
T ss_pred             EEEEECCCccCc
Confidence            999999999874

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.83  E-value=1.2e-19  Score=184.54  Aligned_cols=177  Identities=20%  Similarity=0.276  Sum_probs=110.2

Q ss_pred             CCCCccchHHHHHHHHHHc-C--CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         38 YPNYTSYIAASYVKNIEAA-G--ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        38 ~~~~~~~i~~~~~~~l~~a-G--~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      .++++||. .++++.|++. |  ..+.+++++....+....+..+||||++||+.+...     .....+.+.+.+..+.
T Consensus        11 ID~~DSft-~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~-----~~~~~i~~~i~~~~~~   84 (742)
T TIGR01823        11 IDSYDSFT-YNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNN-----AQDMGIISELWELANL   84 (742)
T ss_pred             EeCCcchH-HHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccc-----hhhhHHHHHHHHhccc
Confidence            35567775 4778888875 3  566777766433322224678999999877633211     1111222222221111


Q ss_pred             CCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCc
Q psy12875        115 GVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~  194 (308)
                       .++||||||+|||+|+.+ +||++.....                                                  
T Consensus        85 -~~iPvLGIClG~QlLa~a-~GG~v~~~~~--------------------------------------------------  112 (742)
T TIGR01823        85 -DEVPVLGICLGFQSLCLA-QGADISRLPT--------------------------------------------------  112 (742)
T ss_pred             -CCCcEEEEchhhHHHHhh-cCCEEEECCC--------------------------------------------------
Confidence             248999999999999999 9998632110                                                  


Q ss_pred             ccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCC--eEEEEEecCCCc
Q psy12875        195 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET--WNILTLSKYKSW  272 (308)
Q Consensus       195 v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~--~~via~s~~~~~  272 (308)
                         ..||....+.+        ....+|.+++. +.        ++++|++.+...      .++.  +.+++.+.++. 
T Consensus       113 ---~~hG~~~~v~~--------~~~~lf~gl~~-~~--------v~~~Hs~~v~~~------~~~~l~~~~~a~~~~~~-  165 (742)
T TIGR01823       113 ---PKHGQVYEMHT--------NDAAIFCGLFS-VK--------STRYHSLYANPE------GIDTLLPLCLTEDEEGI-  165 (742)
T ss_pred             ---CCcCeEEEEEE--------CCccccCCCCC-Cc--------eeEEEEEEccCC------CCCcceEEEEEEcCCCC-
Confidence               00122222221        24457887764 43        489999998642      3344  45666655544 


Q ss_pred             eEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875        273 EFVSTVEHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       273 ~~v~ai~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                       .+||++++++|+||||||||+..++.+
T Consensus       166 -~i~ai~h~~~pi~GVQFHPE~~~s~~g  192 (742)
T TIGR01823       166 -ILMSAQTKKKPWFGVQYHPESCCSELG  192 (742)
T ss_pred             -eEEEEEEcCCceEEEEeCcccCCCCcc
Confidence             589999999999999999999888765

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.83  E-value=6.8e-20  Score=157.50  Aligned_cols=161  Identities=24%  Similarity=0.429  Sum_probs=101.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH-HHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR-QILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~-~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .+.+++|+++|+++..+.   +++    .+.++|+||+||+++.. .  ......+ .+.+.+++  +  .++|+||||+
T Consensus        13 ~s~~~al~~~g~~~~~v~---~~~----~l~~~D~lIlPG~g~~~-~--~~~~L~~~gl~~~i~~--~--~g~PvlGICl   78 (192)
T PRK13142         13 SNVKRAIEHLGYEVVVSN---TSK----IIDQAETIILPGVGHFK-D--AMSEIKRLNLNAILAK--N--TDKKMIGICL   78 (192)
T ss_pred             HHHHHHHHHcCCCEEEEe---CHH----HhccCCEEEECCCCCHH-H--HHHHHHHCCcHHHHHH--h--CCCeEEEECH
Confidence            477899999999988775   222    46789999999997411 1  1221111 34555655  3  3489999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+..+.+|..           .+|++.|+....+.      ...++|.+||.            .+.         
T Consensus        79 GmQlL~~~~~eg~~-----------~GLgll~~~V~rf~------~~~~vph~GWn------------~~~---------  120 (192)
T PRK13142         79 GMQLMYEHSDEGDA-----------SGLGFIPGNISRIQ------TEYPVPHLGWN------------NLV---------  120 (192)
T ss_pred             HHHHHhhhcccCCc-----------CccCceeEEEEECC------CCCCCCccccc------------ccC---------
Confidence            99999988433321           24667666554321      12345655553            111         


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                                 .+.++++             ..+++.|++.+.        .++  .+++.++.+ ..++++++..  ++
T Consensus       121 -----------~~~~l~~-------------~~~yFVhSy~v~--------~~~--~v~~~~~yg-~~~~~~v~~~--n~  163 (192)
T PRK13142        121 -----------SKHPMLN-------------QDVYFVHSYQAP--------MSE--NVIAYAQYG-ADIPAIVQFN--NY  163 (192)
T ss_pred             -----------CCCcccc-------------cEEEEECCCeEC--------CCC--CEEEEEECC-CeEEEEEEcC--CE
Confidence                       1233443             135999999983        112  355665554 3468888765  49


Q ss_pred             EEEeecCCccC
Q psy12875        286 VGIQFHPEKNA  296 (308)
Q Consensus       286 ~GvQFHPE~~~  296 (308)
                      +|+|||||++.
T Consensus       164 ~g~QFHPEkS~  174 (192)
T PRK13142        164 IGIQFHPEKSG  174 (192)
T ss_pred             EEEecCcccCc
Confidence            99999999986

>TIGR00337 PyrG CTP synthase

Probab=99.83  E-value=9.8e-20  Score=176.04  Aligned_cols=218  Identities=19%  Similarity=0.249  Sum_probs=123.2

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCC----eEEEEEcCCChhHH--HHhcCCCCEEEEcCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGA----RVVPILIGQDREYY--AEILTQINGVVIPGGGTG   90 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~----~~~~i~~~~~~~~~--~~~l~~~dGlilpGG~~~   90 (308)
                      .++.||+..--..          ..++|.  |+.++|+.+|+    .+.+.+.+.+....  .+.++++|||++|||+.+
T Consensus       288 ~~v~IalVGKY~~----------~~daY~--SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~  355 (525)
T TIGR00337       288 HEVTIGIVGKYVE----------LKDSYL--SVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGE  355 (525)
T ss_pred             CCcEEEEEeCCcC----------CHHHHH--HHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCC
Confidence            3588888766322          235674  89999999886    45666554432211  124788999999999732


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhh
Q psy12875         91 FDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINE  170 (308)
Q Consensus        91 ~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~  170 (308)
                      ..        ....++.++.+.+.  ++|+||||+|||+|+.+ +|+++.....     +..-.+.|+...|-. ..+..
T Consensus       356 ~~--------~~g~i~ai~~a~e~--~iP~LGIClG~Qll~i~-~grnv~gl~~-----A~s~Ef~~~~~~pVi-~l~~~  418 (525)
T TIGR00337       356 RG--------VEGKILAIKYAREN--NIPFLGICLGMQLAVIE-FARNVLGLKG-----ANSTEFDPETKYPVV-DLLPE  418 (525)
T ss_pred             hh--------hcChHHHHHHHHHc--CCCEEEEcHHHHHHHHH-HHHHhcCCCC-----CCccccCCCCCCCee-eccCc
Confidence            11        12334555666663  49999999999999999 8886543221     011112222222210 00000


Q ss_pred             hcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeee
Q psy12875        171 EGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITR  249 (308)
Q Consensus       171 ~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~  249 (308)
                                    |.-....||+.+-.    .+.+.    +   .+++.+.+-+.        ... ...+.|++.|++
T Consensus       419 --------------~~~~~~~GGTmRLG----~h~v~----i---~~gS~L~~iyG--------~~~i~erhrHry~VNs  465 (525)
T TIGR00337       419 --------------QKDISDLGGTMRLG----LYPCI----L---KPGTLAFKLYG--------KEEVYERHRHRYEVNN  465 (525)
T ss_pred             --------------ccccccCCceeecc----ceEEE----E---CCCChHHHHhC--------CCceeecccceEEECH
Confidence                          00000112222111    01111    1   13444443332        222 236778888876


Q ss_pred             ccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875        250 QDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW  299 (308)
Q Consensus       250 ~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~  299 (308)
                      ...+.. ..++++++|++.|++  .|+|+|++++||+ |||||||+...+.
T Consensus       466 ~h~q~l-~~~GL~vsa~s~Dgg--~VEaIE~~~hpfflGVQwHPE~~s~p~  513 (525)
T TIGR00337       466 EYREQL-ENKGLIVSGTSPDGR--LVEIIELPDHPFFVACQFHPEFTSRPN  513 (525)
T ss_pred             HHHHhh-hhCCeEEEEEECCCC--EEEEEEECCCCeEEEEecCCCCCCCCC
Confidence            443211 237899999998865  5889999999976 9999999886553

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=99.81  E-value=1.6e-19  Score=155.09  Aligned_cols=157  Identities=19%  Similarity=0.276  Sum_probs=99.9

Q ss_pred             HHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         50 VKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      .++|++.|+++..+...   +    .++++|||++|||+..     .+...  ...+.+.++++.+++  +|+||||.|+
T Consensus        14 ~~~l~~~g~~v~~v~~~---~----~l~~~dgiii~Gg~~~-----~~~~~~~~~~~~~~i~~~~~~g--~PvlGiC~G~   79 (183)
T cd01749          14 IRALERLGVEVIEVRTP---E----DLEGIDGLIIPGGEST-----TIGKLLRRTGLLDPLREFIRAG--KPVFGTCAGL   79 (183)
T ss_pred             HHHHHHCCCeEEEECCH---H----HhccCCEEEECCchHH-----HHHHHHHhCCHHHHHHHHHHcC--CeEEEECHHH
Confidence            38999999998888642   1    3678999999999731     12222  124567788888854  9999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccc-cee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKV-QQV  206 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~-~~~  206 (308)
                      |+|+.+ +|+..   ..      ..+++.|+                                   ++.+...|.. ...
T Consensus        80 qlL~~~-~~~~~---~~------~glG~~~~-----------------------------------~v~~~~~g~~~g~~  114 (183)
T cd01749          80 ILLAKE-VEDQG---GQ------PLLGLLDI-----------------------------------TVRRNAFGRQVDSF  114 (183)
T ss_pred             HHHHHH-hcccC---CC------CccCceeE-----------------------------------EEEeeccccccceE
Confidence            999999 77641   00      12333322                                   2222111100 000


Q ss_pred             eecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        207 NLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                      .          ....+.+.+ +++.        ++++|.+.|..       +|++++++|+++++    +.+++.+  ++
T Consensus       115 ~----------~~l~~~~~~~~~~~--------~~~~h~~~v~~-------~p~~~~~la~~~~~----~~a~~~~--~~  163 (183)
T cd01749         115 E----------ADLDIPGLGLGPFP--------AVFIRAPVIEE-------VGPGVEVLAEYDGK----IVAVRQG--NV  163 (183)
T ss_pred             E----------EcCCCCcCCCCccE--------EEEEECcEEEE-------cCCCcEEEEecCCE----EEEEEEC--CE
Confidence            0          111122222 3333        37889998864       89999999998654    3377765  59


Q ss_pred             EEEeecCCccC
Q psy12875        286 VGIQFHPEKNA  296 (308)
Q Consensus       286 ~GvQFHPE~~~  296 (308)
                      ||+|||||.+.
T Consensus       164 ~g~qfHPE~~~  174 (183)
T cd01749         164 LATSFHPELTD  174 (183)
T ss_pred             EEEEcCCccCC
Confidence            99999999874

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.80  E-value=3.9e-19  Score=171.97  Aligned_cols=199  Identities=18%  Similarity=0.253  Sum_probs=111.0

Q ss_pred             CccchHHHHHHHHHHcC----CeEEEEEcCCChh---HHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy12875         41 YTSYIAASYVKNIEAAG----ARVVPILIGQDRE---YYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE  113 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG----~~~~~i~~~~~~~---~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~  113 (308)
                      .++|.  |+.++|+.+|    ..+.+.++++..-   .....++++|||++|||..+  .      ......+.++.+.+
T Consensus       301 ~DaY~--Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~--~------~~~g~i~~i~~a~e  370 (533)
T PRK05380        301 PDAYK--SVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGE--R------GIEGKILAIRYARE  370 (533)
T ss_pred             cHHHH--HHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCc--c------ccccHHHHHHHHHH
Confidence            35564  7778887765    4567777665431   13457889999999998521  1      11234566666666


Q ss_pred             cCCCccEEEechhhhHHHHHhcCCccc--ccccccccc----ccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHH
Q psy12875        114 EGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQV----NLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELI  187 (308)
Q Consensus       114 ~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~~----~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll  187 (308)
                      +  ++|+||||+|||+|+.+ +||++.  ++....+..    .+.+.+.+.....                         
T Consensus       371 ~--~iPiLGIClGmQll~va-~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~-------------------------  422 (533)
T PRK05380        371 N--NIPFLGICLGMQLAVIE-FARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDV-------------------------  422 (533)
T ss_pred             C--CCcEEEEchHHHHHHHH-hcccccCcccCcccccCCCCCCCeEeeccccccc-------------------------
Confidence            4  59999999999999999 999873  332111100    0011121110000                         


Q ss_pred             HHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe
Q psy12875        188 LQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS  267 (308)
Q Consensus       188 ~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s  267 (308)
                       ...|++...    ..+.+.    +   .+++.+.+-+..+..       ...+.|++.|++..-+.. -..+++++|++
T Consensus       423 -~~~ggtmrl----g~h~v~----i---~~gS~l~~iyg~~~i-------~ErhrHryeVNs~h~qal-~~~GL~vsa~s  482 (533)
T PRK05380        423 -SDLGGTMRL----GAYPCK----L---KPGTLAAEIYGKEEI-------YERHRHRYEVNNKYREQL-EKAGLVFSGTS  482 (533)
T ss_pred             -cccCCcccc----cceeEE----E---CCCChHHHHhCCCce-------eeecccceecCHHHHHHH-hhcCeEEEEEc
Confidence             000111000    001111    1   134444433322110       114556666654322110 12489999998


Q ss_pred             cCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875        268 KYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW  299 (308)
Q Consensus       268 ~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~  299 (308)
                      +|++  .|+|+|.+++||| |+|||||+...+.
T Consensus       483 ~Dgg--lVEaIEl~~hpfflGVQwHPE~~s~p~  513 (533)
T PRK05380        483 PDGR--LVEIVELPDHPWFVGVQFHPEFKSRPR  513 (533)
T ss_pred             CCCC--cEEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence            7764  4889999999976 9999999876543

>PLN02327 CTP synthase

Probab=99.77  E-value=5.1e-18  Score=164.49  Aligned_cols=203  Identities=16%  Similarity=0.219  Sum_probs=112.5

Q ss_pred             CccchHHHHHHHHHHc----CCeEEEEEcCCChhH-------------HHHhcCCCCEEEEcCCCCCCCCCCchhHHHHH
Q psy12875         41 YTSYIAASYVKNIEAA----GARVVPILIGQDREY-------------YAEILTQINGVVIPGGGTGFDHPNGYADAGRQ  103 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~~~-------------~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~  103 (308)
                      .+.|.  |+.++|+.+    +..+.+.|++++.-+             ..+.++++|||++|||.-+..    .    ..
T Consensus       310 ~DAY~--Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~----~----~G  379 (557)
T PLN02327        310 SDSYL--SVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRG----V----EG  379 (557)
T ss_pred             cHhHH--HHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcc----c----cc
Confidence            35665  677777765    466777776554211             123588999999999952211    1    13


Q ss_pred             HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehh
Q psy12875        104 ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLG  183 (308)
Q Consensus       104 ~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG  183 (308)
                      ....++.+.+  +++|+||||+|||+++.+ ++.....-. +.    ..-.+.|....|.. ..+.+          |  
T Consensus       380 ~i~ai~~are--~~iP~LGIClGmQl~vie-faRnvlG~~-dA----nS~Efdp~t~~pvI-~~m~e----------~--  438 (557)
T PLN02327        380 KILAAKYARE--NKVPYLGICLGMQIAVIE-FARSVLGLK-DA----NSTEFDPETPNPCV-IFMPE----------G--  438 (557)
T ss_pred             HHHHHHHHHH--cCCCEEEEcHHHHHHHHH-HHHhhcCCc-CC----CccccCCCCCCCEE-EEehh----------c--
Confidence            3444555555  459999999999999998 665442111 00    01111121111110 00000          0  


Q ss_pred             HHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc--eeeccceeeeeccccccCC-CCC
Q psy12875        184 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL--THNNHIWCITRQDMIKYGL-TET  260 (308)
Q Consensus       184 ~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--v~~~H~~~v~~~~~~~~~l-~~~  260 (308)
                        -. ...||+....         ......+ .+++.+.+-        +++...  ..+.|+|.++++....  + ..+
T Consensus       439 --~~-~~~GGtMRLG---------~~~~~~~-~~~S~l~~i--------Yg~~~~VnerHrHRYeVN~q~v~~--le~~g  495 (557)
T PLN02327        439 --SK-THMGGTMRLG---------SRRTYFQ-TPDCKSAKL--------YGNVSFVDERHRHRYEVNPEMVPR--LEKAG  495 (557)
T ss_pred             --cc-ccCCceEECC---------CcccccC-CCCCHHHHH--------hCCccceeeeeccccccCHHHHHH--HhhcC
Confidence              00 1123332221         1000000 123333332        222221  3677889998776432  3 589


Q ss_pred             eEEEEEecCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875        261 WNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW  299 (308)
Q Consensus       261 ~~via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~  299 (308)
                      ++++|+++++.  .|+++|++++|+| |+|||||+.....
T Consensus       496 L~vsa~s~dg~--~IEaiE~~~~pffvGVQfHPE~~s~p~  533 (557)
T PLN02327        496 LSFVGKDETGR--RMEIVELPSHPFFVGVQFHPEFKSRPG  533 (557)
T ss_pred             cEEEEEcCCCC--EEEEEEeCCCCEEEEEEcCCCCCCCCC
Confidence            99999998765  5889999999987 9999999876544

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.77  E-value=1.1e-17  Score=164.15  Aligned_cols=174  Identities=23%  Similarity=0.348  Sum_probs=106.3

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEec
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      .+..++|++.|.++..++.   ++    .++.+|+||+||+++.. .  .+ +..+  .+.+.++++++.+  +|+||||
T Consensus        20 ~sl~~al~~~G~~v~~v~~---~~----~l~~~D~lIlpG~gs~~-~--~m-~~L~~~gl~~~i~~~i~~g--~PvLGIC   86 (538)
T PLN02617         20 RSVRNAIRHLGFTIKDVQT---PE----DILNADRLIFPGVGAFG-S--AM-DVLNNRGMAEALREYIQND--RPFLGIC   86 (538)
T ss_pred             HHHHHHHHHCCCeEEEECC---hh----hhccCCEEEECCCCCHH-H--HH-HHHHHcCHHHHHHHHHHcC--CCEEEEC
Confidence            3678999999999877652   22    46789999999987421 1  11 1111  3566777777744  9999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|||+|+.++.++...          .++++.||......    .....++|.+|+.            .+..       
T Consensus        87 ~G~QlLa~~~~E~g~~----------~glg~l~G~v~~~~----~~~~~~vp~iGw~------------~V~~-------  133 (538)
T PLN02617         87 LGLQLLFESSEENGPV----------EGLGVIPGVVGRFD----SSNGLRVPHIGWN------------ALQI-------  133 (538)
T ss_pred             HHHHHHhhhhhhcCCc----------cCcccccceEEECC----ccCCCCCCeecce------------EEEe-------
Confidence            9999999873211111          12444444322100    0001234555553            2211       


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCe-EEEEEecCCCceEEEEEEecCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETW-NILTLSKYKSWEFVSTVEHKEY  283 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~-~via~s~~~~~~~v~ai~~~~~  283 (308)
                                 ..+++++.+++. .        .++++|++.+.+       ++... .++++++.+ .++++++++.  
T Consensus       134 -----------~~~spL~~~l~~-~--------~vy~vHSy~v~~-------~p~~~~~v~a~~~~g-~~~IaAI~~g--  183 (538)
T PLN02617        134 -----------TKDSELLDGVGG-R--------HVYFVHSYRATP-------SDENKDWVLATCNYG-GEFIASVRKG--  183 (538)
T ss_pred             -----------cCCChhHhcCCC-c--------EEEEEeEEEEEe-------cCCCCcEEEEEEccC-CCcEEEEEeC--
Confidence                       235678877643 2        248899998753       34333 344544433 3479999975  


Q ss_pred             CEEEEeecCCccC
Q psy12875        284 PIVGIQFHPEKNA  296 (308)
Q Consensus       284 p~~GvQFHPE~~~  296 (308)
                      ++||+|||||++.
T Consensus       184 nI~GVQFHPE~s~  196 (538)
T PLN02617        184 NVHAVQFHPEKSG  196 (538)
T ss_pred             CEEEEEcCCccCc
Confidence            6999999999985

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.76  E-value=7.1e-18  Score=144.90  Aligned_cols=74  Identities=24%  Similarity=0.451  Sum_probs=54.4

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      +..++|+++|+++..++.   .+    .++++|+|++|||...     .+...  ...+.+.++++.+++  +|++|||.
T Consensus        13 e~~~~l~~~g~~~~~v~~---~~----~l~~~d~liipGG~~~-----~~~~l~~~~~l~~~i~~~~~~g--~pilGIC~   78 (184)
T TIGR03800        13 EHARALEALGVEGVEVKR---PE----QLDEIDGLIIPGGEST-----TLSRLLDKYGMFEPLRNFILSG--LPVFGTCA   78 (184)
T ss_pred             HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCHH-----HHHHHHHhccHHHHHHHHHHcC--CcEEEECH
Confidence            456899999999887753   22    4678999999998531     12222  224567788888754  99999999


Q ss_pred             hhhHHHHHhcC
Q psy12875        126 GFELILQVSNN  136 (308)
Q Consensus       126 G~Qll~~~~~g  136 (308)
                      |||+|+.. +.
T Consensus        79 G~qlL~~~-~~   88 (184)
T TIGR03800        79 GLIMLAKE-II   88 (184)
T ss_pred             HHHHHHhh-hc
Confidence            99999999 53

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.75  E-value=4.1e-18  Score=160.65  Aligned_cols=201  Identities=17%  Similarity=0.202  Sum_probs=112.8

Q ss_pred             CccchHHHHHHHHHHcC----CeEEEEEcCCChhHH--HHhcC-CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy12875         41 YTSYIAASYVKNIEAAG----ARVVPILIGQDREYY--AEILT-QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE  113 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG----~~~~~i~~~~~~~~~--~~~l~-~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~  113 (308)
                      .|+|.  |..++|+.+|    ..+.+.|+++++-+.  ...+. .+|||++|||.-       +.. ....+..++.+.+
T Consensus       301 ~DaY~--Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG-------~RG-~eGkI~Ai~yARE  370 (533)
T COG0504         301 PDAYK--SVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFG-------YRG-VEGKIAAIRYARE  370 (533)
T ss_pred             hhHHH--HHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCC-------cCc-hHHHHHHHHHHHh
Confidence            46676  7888998776    566777776543111  11222 299999999952       111 1244555555555


Q ss_pred             cCCCccEEEechhhhHHHHHhcCCcccccc-----ccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHH
Q psy12875        114 EGVTFPVLGVCLGFELILQVSNNDTDFRKS-----CKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELIL  188 (308)
Q Consensus       114 ~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~-----~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~  188 (308)
                        +++|+||||+|||+++.......+....     .+.....+-+.+.|+...-.                         
T Consensus       371 --n~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~-------------------------  423 (533)
T COG0504         371 --NNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVV-------------------------  423 (533)
T ss_pred             --cCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCC-------------------------
Confidence              5699999999999998762221111000     11111112233333221100                         


Q ss_pred             HHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeeeccccccCCCCCeEEEEEe
Q psy12875        189 QVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITRQDMIKYGLTETWNILTLS  267 (308)
Q Consensus       189 ~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~~~~~~~~l~~~~~via~s  267 (308)
                       -+||+.+-         +......  ..++.+.+        .++... ...+.|+|.++++..... ...++.+.++|
T Consensus       424 -~lGGTmRL---------G~y~~~l--~~gT~a~~--------lY~~~~v~ERHRHRYEvN~~y~~~l-e~~Gl~~sg~s  482 (533)
T COG0504         424 -DLGGTMRL---------GAYPCRL--KPGTLAAK--------LYGKDEIYERHRHRYEVNNDYRDQL-EKAGLVFSGTS  482 (533)
T ss_pred             -cCCceeec---------cceeeec--CCCcHHHH--------HhCCCeeeeeccchhhcCHHHHHHH-HhCCeEEEEEc
Confidence             02222211         1100000  11222222        122111 135788999987765432 45789999999


Q ss_pred             cCCCceEEEEEEecCCCEE-EEeecCCccCcccCC
Q psy12875        268 KYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTE  301 (308)
Q Consensus       268 ~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~~~  301 (308)
                      .|+.  .++++|.+++||| |+|||||+...+.-+
T Consensus       483 ~d~~--lvEivE~~~hpfFv~~QfHPEf~SrP~~p  515 (533)
T COG0504         483 PDGG--LVEIVELPDHPFFVATQFHPEFKSRPLRP  515 (533)
T ss_pred             CCCC--eEEEEEcCCCceEEEEcccccccCCCCCC
Confidence            8876  6999999999976 999999999887655

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=99.75  E-value=2.4e-17  Score=146.68  Aligned_cols=198  Identities=17%  Similarity=0.301  Sum_probs=110.7

Q ss_pred             EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH
Q psy12875         20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD   99 (308)
Q Consensus        20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~   99 (308)
                      .|||++-...              +  .+..++|+++|++++.+..   .+    .+.++||||||||.+.     .+..
T Consensus         3 ~igVLa~qG~--------------~--~e~~~aL~~lG~ev~~v~~---~~----~L~~~DgLILPGGfs~-----~~~~   54 (248)
T PLN02832          3 AIGVLALQGS--------------F--NEHIAALRRLGVEAVEVRK---PE----QLEGVSGLIIPGGEST-----TMAK   54 (248)
T ss_pred             EEEEEeCCCc--------------h--HHHHHHHHHCCCcEEEeCC---HH----HhccCCEEEeCCCHHH-----HHHH
Confidence            5888877432              1  2446899999999887753   22    4678999999997531     2443


Q ss_pred             HHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc-ccccccccccccceeeecCCCCcchhhhHhhhcCCCC
Q psy12875        100 AGR--QILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD-FRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP  176 (308)
Q Consensus       100 ~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~-~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~P  176 (308)
                      ..+  .+.+.++++.++|  +|+||||.|||+|+..+.+++. -+.....-+..-.-++.++....+      +...++|
T Consensus        55 L~~~~gl~~~I~~~v~~g--~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sf------e~~l~ip  126 (248)
T PLN02832         55 LAERHNLFPALREFVKSG--KPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSF------ETELPVP  126 (248)
T ss_pred             HHhhcchHHHHHHHHHcC--CCEEEEChhHHHHHHHhcccccCCcceeCCccceEEecccCceeEeE------EcCCcCC
Confidence            333  4677788877744  9999999999999988444210 000000000000011333322222      0123566


Q ss_pred             eeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC
Q psy12875        177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG  256 (308)
Q Consensus       177 ilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~  256 (308)
                      .+||.            .+...   ....+     +.   +...+           ....+.++..|++....+.     
T Consensus       127 ~~gwn------------~~~~~---~~~~v-----Fi---rap~i-----------~~~~~~v~~l~sy~~~~~~-----  167 (248)
T PLN02832        127 ELAAS------------EGGPE---TFRAV-----FI---RAPAI-----------LSVGPGVEVLAEYPLPSEK-----  167 (248)
T ss_pred             ccccc------------ccccc---ccceE-----Ee---cCCce-----------EeCCCcEEEEEEecccccc-----
Confidence            66653            11000   00000     10   11112           1123346888988765321     


Q ss_pred             CCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        257 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       257 l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                         .-.++|+++.+...++++++..+  ++|+|||||++..
T Consensus       168 ---~~~~~a~~~y~~~~~~~aV~qgn--vlatqFHPEls~d  203 (248)
T PLN02832        168 ---ALYSSSTDAEGRDKVIVAVKQGN--LLATAFHPELTAD  203 (248)
T ss_pred             ---cccccccccccCCceEEEEEeCC--EEEEEccCccCCc
Confidence               12345665555435788998775  9999999999865

>KOG3179|consensus

Probab=99.73  E-value=3.6e-17  Score=137.79  Aligned_cols=173  Identities=23%  Similarity=0.287  Sum_probs=114.6

Q ss_pred             CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875         41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV  120 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv  120 (308)
                      +..|. ..++..|.+-|......++....---+++|+++||++|+|+..|...   ..+|...+.+++++...  .++||
T Consensus        23 yGgy~-nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~---d~dWI~KLcs~~kkld~--mkkkv   96 (245)
T KOG3179|consen   23 YGGYF-NVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFS---DADWIKKLCSFVKKLDF--MKKKV   96 (245)
T ss_pred             hcCHH-HHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccc---cchHHHHHHHHHHHHHh--hccce
Confidence            34564 36678888888777766654331111236889999999999765433   33455566666666555  34899


Q ss_pred             EEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875        121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS  200 (308)
Q Consensus       121 lGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~  200 (308)
                      +|||+|||+++.+ .||++.+..-             ||.                 ||-           | .+..   
T Consensus        97 lGICFGHQiiara-~Gg~Vgra~K-------------G~~-----------------~~l-----------g-~iti---  130 (245)
T KOG3179|consen   97 LGICFGHQIIARA-KGGKVGRAPK-------------GPD-----------------LGL-----------G-SITI---  130 (245)
T ss_pred             EEEeccHHHHHHh-hCCccccCCC-------------CCc-----------------ccc-----------c-ceEE---
Confidence            9999999999998 9988754321             110                 000           0 1111   


Q ss_pred             cccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEe
Q psy12875        201 CKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEH  280 (308)
Q Consensus       201 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~  280 (308)
                           +..+      .+....|..+|..+..        ...|++.|-.       +|++++++|+|++|.   ++.+..
T Consensus       131 -----vk~~------~~~~~yFG~~~~~l~I--------ikcHqDevle-------~PE~a~llasSe~ce---ve~fs~  181 (245)
T KOG3179|consen  131 -----VKDA------EKPEKYFGEIPKSLNI--------IKCHQDEVLE-------LPEGAELLASSEKCE---VEMFSI  181 (245)
T ss_pred             -----EEec------ccchhhcccchhhhhH--------Hhhcccceec-------CCchhhhhccccccc---eEEEEe
Confidence                 0000      2344577766665543        6689999874       999999999999998   557777


Q ss_pred             cCCCEEEEeecCCcc
Q psy12875        281 KEYPIVGIQFHPEKN  295 (308)
Q Consensus       281 ~~~p~~GvQFHPE~~  295 (308)
                      .+ +++++|.|||++
T Consensus       182 ~~-~~l~fQGHPEyn  195 (245)
T KOG3179|consen  182 ED-HLLCFQGHPEYN  195 (245)
T ss_pred             cc-eEEEecCCchhh
Confidence            76 699999999986

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.72  E-value=3.9e-17  Score=144.94  Aligned_cols=87  Identities=26%  Similarity=0.423  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCC-CchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHP-NGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      +.++.++|+++|+.+..+++...      .++++|+|++|||.+..+.. .........+.++++++.+.+  +||+|||
T Consensus        14 ~~~~~~al~~~G~~~~~i~~~~~------~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g--~pvlgIC   85 (227)
T TIGR01737        14 DRDTVYALRLLGVDAEIVWYEDG------SLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKG--VPVLGIC   85 (227)
T ss_pred             HHHHHHHHHHCCCeEEEEecCCC------CCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcC--CEEEEEC
Confidence            44667999999999998876532      26789999999996321110 000111124567777887754  9999999


Q ss_pred             hhhhHHHHH-hcCCccc
Q psy12875        125 LGFELILQV-SNNDTDF  140 (308)
Q Consensus       125 ~G~Qll~~~-~~gg~~~  140 (308)
                      .|+|+|+.+ .++|++.
T Consensus        86 ~G~QlLa~~GlL~G~l~  102 (227)
T TIGR01737        86 NGFQILVEAGLLPGALL  102 (227)
T ss_pred             HHHHHHHHcCCCCCcee
Confidence            999999985 2566553

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>KOG1622|consensus

Probab=99.70  E-value=1.7e-17  Score=154.25  Aligned_cols=165  Identities=19%  Similarity=0.309  Sum_probs=114.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      -+.+.+++......++|.+.....+..  ..+.|||++||+.++... +-......+++         -++||||||+||
T Consensus        31 ~I~RrvRel~v~se~~p~~t~~~~i~~--~~~rgiIiSGGP~SVya~-dAP~~dp~if~---------~~vpvLGICYGm   98 (552)
T KOG1622|consen   31 VIDRRVRELNVQSEILPLTTPAKTITE--YGPRGIIISGGPNSVYAE-DAPSFDPAIFE---------LGVPVLGICYGM   98 (552)
T ss_pred             HHHHHHHHHhhhhhhccCCChhhhhhc--CCceEEEEeCCCCccccC-cCCCCChhHhc---------cCCcceeehhHH
Confidence            456788888888888888776554432  478999999999766553 11111123444         249999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.. +||++.+... .+         +|+.                                 ++..          
T Consensus        99 Q~i~~~-~Gg~V~~~~~-RE---------~G~~---------------------------------eI~v----------  124 (552)
T KOG1622|consen   99 QLINKL-NGGTVVKGMV-RE---------DGED---------------------------------EIEV----------  124 (552)
T ss_pred             HHHHHH-hCCccccccc-cC---------CCCc---------------------------------eEEc----------
Confidence            999999 9998753211 00         1110                                 1111          


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG  287 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G  287 (308)
                              ...+.+|+++.+....      .|+..|++.+..       ++++|+++|+|.+..   ++++.+..+++||
T Consensus       125 --------~~~~~lF~~~~~~~~~------~VlltHgdsl~~-------v~~g~kv~a~s~n~~---va~i~~e~kkiyg  180 (552)
T KOG1622|consen  125 --------DDSVDLFSGLHKTEFM------TVLLTHGDSLSK-------VPEGFKVVAFSGNKP---VAGILNELKKIYG  180 (552)
T ss_pred             --------Cchhhhhhhhccccee------eeeeccccchhh-------ccccceeEEeecCcc---eeeehhhhhhhhc
Confidence                    1244577776553320      247789998874       899999999987765   7799998889999


Q ss_pred             EeecCCccCcccCCC
Q psy12875        288 IQFHPEKNAYEWTES  302 (308)
Q Consensus       288 vQFHPE~~~~~~~~~  302 (308)
                      +|||||...++.|..
T Consensus       181 lqfhpEV~~t~~g~~  195 (552)
T KOG1622|consen  181 LQFHPEVTLTPNGKE  195 (552)
T ss_pred             CCCCCcccccCchhH
Confidence            999999999988863

>KOG1224|consensus

Probab=99.69  E-value=5e-17  Score=153.64  Aligned_cols=131  Identities=22%  Similarity=0.308  Sum_probs=98.2

Q ss_pred             ceeeecCCCCcc---hhh---hHhhhcCCCCeeeeehhHHHHHHHhCCcccccC---CcccceeeecccccCCCCCCcCc
Q psy12875        152 NLKFLPGAKRSS---LFS---QINEEGVTFPVLGVCLGFELILQVSNNDTDFRK---SCKVQQVNLNLKFLPGAKRSSLF  222 (308)
Q Consensus       152 ~l~~~pg~~~~~---~~~---~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~---~g~~~~~~~~~~~~~~~~~~~l~  222 (308)
                      .+.++|||++|.   .+.   .+-...+++||||||||||.|+.+-|+.|...+   ||++..+.++..+.    -+.++
T Consensus        67 aIVVgPGPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~----f~gi~  142 (767)
T KOG1224|consen   67 AIVVGPGPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNIL----FSGIP  142 (767)
T ss_pred             eEEecCCCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceecCCCcccceeeeEEecCcEE----EccCC
Confidence            378899999994   233   333346689999999999999999999998765   78888888753321    34455


Q ss_pred             cCCChhHHHhhccCCceeeccceeeeeccccccCCCCC-eEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875        223 SQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTET-WNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       223 ~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~-~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      .+.++.+.+        .+||+..+++       +|-. +.+++++.|.+--++|.+.+++.|.||+|||||+..++.|-
T Consensus       143 sg~~~~fK~--------~RYHSL~in~-------~pid~l~il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~  207 (767)
T KOG1224|consen  143 SGRNSDFKV--------VRYHSLIINS-------LPIDLLPILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGS  207 (767)
T ss_pred             CCCccccee--------EEeEEEEecC-------CchhhhcceeEeecCCceEEEEeeccCCCccceeeChHHhhhhhhH
Confidence            555666664        8999999985       5533 45556654333246999999999999999999999988774

>KOG2387|consensus

Probab=99.62  E-value=2.9e-15  Score=139.22  Aligned_cols=202  Identities=20%  Similarity=0.288  Sum_probs=112.1

Q ss_pred             CccchHHHHHHHHHHcC----CeEEEEEcCCC----------hhHH---HHhcCCCCEEEEcCCCCCCCCCCchhHHHHH
Q psy12875         41 YTSYIAASYVKNIEAAG----ARVVPILIGQD----------REYY---AEILTQINGVVIPGGGTGFDHPNGYADAGRQ  103 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG----~~~~~i~~~~~----------~~~~---~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~  103 (308)
                      .|+|+  |.+++|+.++    -.+.+.++++.          +...   =+.+..+|||++|||.-+-        -...
T Consensus       311 ~DsY~--Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~R--------GveG  380 (585)
T KOG2387|consen  311 SDSYL--SVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDR--------GVEG  380 (585)
T ss_pred             hHHHH--HHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccccc--------chhH
Confidence            46776  7888888654    44555555442          1111   1257889999999995211        1123


Q ss_pred             HHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccc-----cccccccccceeeecCCCCcchhhhHhhhcCCCCee
Q psy12875        104 ILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRK-----SCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVL  178 (308)
Q Consensus       104 ~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~-----~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~Pil  178 (308)
                      .+..++.+.+  +++|.||||+|||+-+.......+...     ..+.+..++.+.++|.-...                
T Consensus       381 ~i~Aak~ARe--n~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~----------------  442 (585)
T KOG2387|consen  381 KILAAKWARE--NKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKT----------------  442 (585)
T ss_pred             HHHHHHHHHh--cCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcc----------------
Confidence            3444444444  569999999999998865222211111     11111112233343322110                


Q ss_pred             eeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCce--eeccceeeeeccccccC
Q psy12875        179 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLT--HNNHIWCITRQDMIKYG  256 (308)
Q Consensus       179 GiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v--~~~H~~~v~~~~~~~~~  256 (308)
                                 .+||+.+         .+.         ....|..-.+.+...+++.+.|  .+.|+|.|+|+..... 
T Consensus       443 -----------~mGgtMR---------LG~---------R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~l-  492 (585)
T KOG2387|consen  443 -----------HMGGTMR---------LGS---------RRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQL-  492 (585)
T ss_pred             -----------cccceee---------ecc---------cceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHH-
Confidence                       0111211         111         1112222222233333333322  5678999988654322 


Q ss_pred             CCCCeEEEEEecCCCceEEEEEEecCCCEE-EEeecCCccCcccCCC
Q psy12875        257 LTETWNILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTES  302 (308)
Q Consensus       257 l~~~~~via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~~~~  302 (308)
                      ...++..++.+.++.  -++.+|.+++|+| |+|||||+...+--++
T Consensus       493 e~~Gl~FvGkd~~g~--rmeI~El~~HP~fVg~QfHPE~~srp~kps  537 (585)
T KOG2387|consen  493 EQAGLSFVGKDVTGK--RMEIIELESHPFFVGVQFHPEFKSRPDKPS  537 (585)
T ss_pred             HhcCcEEEeecCCCc--EEEEEEcCCCCceeeeccCHHHhcCCCCCC
Confidence            457899999976655  3789999999977 9999999998876664

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.62  E-value=4.7e-15  Score=135.64  Aligned_cols=142  Identities=17%  Similarity=0.172  Sum_probs=94.6

Q ss_pred             CCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccccccccccccee
Q psy12875         77 TQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLK  154 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~  154 (308)
                      +++||+|+||++....+.  -.|-.....+++++++     ..+|+||||+|+|+++.+ +||.. +...          
T Consensus        98 ~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~-----~~~s~LgICwGaQa~a~a-lgGi~-k~~~----------  160 (302)
T PRK05368         98 EKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKT-----HVTSTLFICWAAQAALYH-LYGIP-KYTL----------  160 (302)
T ss_pred             CCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHH-----cCCCEEEEcHHHHHHHHH-cCCCc-cCCC----------
Confidence            579999999998542121  1232224455666554     348999999999999999 99852 1100          


Q ss_pred             eecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhc
Q psy12875        155 FLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFY  234 (308)
Q Consensus       155 ~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (308)
                                         ....+||-            ..             ...    ...++|++++++.+.+   
T Consensus       161 -------------------~~K~~Gv~------------~~-------------~~~----~~~~pL~~g~~d~F~~---  189 (302)
T PRK05368        161 -------------------PEKLSGVF------------EH-------------RVL----DPHHPLLRGFDDSFLV---  189 (302)
T ss_pred             -------------------CCceeEEE------------EE-------------EEc----CCCChhhcCCCCcccc---
Confidence                               01223331            11             000    2367899999887765   


Q ss_pred             cCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        235 QKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       235 ~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                           .+.|...|..+.+   .++++++++|.|++++   ++++..++.+++++|+|||++..
T Consensus       190 -----phSr~~~V~~~~i---~~~~~l~vLA~S~~~g---v~~~~~~~~r~~~vQgHPEYd~~  241 (302)
T PRK05368        190 -----PHSRYTEVREEDI---RAATGLEILAESEEAG---VYLFASKDKREVFVTGHPEYDAD  241 (302)
T ss_pred             -----ceeehhhccHHHh---ccCCCCEEEecCCCCC---eEEEEeCCCCEEEEECCCCCCHH
Confidence                 5667666654332   2679999999999998   66888777689999999999853

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.58  E-value=1.7e-14  Score=127.34  Aligned_cols=80  Identities=26%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             HHHHHHHHH-HcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCC-CchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875         46 AASYVKNIE-AAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHP-NGYADAGRQILHLVDKINEEGVTFPVLGV  123 (308)
Q Consensus        46 ~~~~~~~l~-~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~PvlGI  123 (308)
                      +.+..++++ .+|+++..++....      .++++|+|++|||.+..+.. .........+.++++++.++  ++|++||
T Consensus        14 ~~d~~~a~~~~~G~~~~~v~~~~~------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~--g~~ilgI   85 (219)
T PRK03619         14 DRDMARALRDLLGAEPEYVWHKET------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEK--GKPVLGI   85 (219)
T ss_pred             HHHHHHHHHhcCCCeEEEEecCcC------CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHC--CCEEEEE
Confidence            345578998 89999988875431      46789999999996321100 00011123567778887774  4999999


Q ss_pred             chhhhHHHHH
Q psy12875        124 CLGFELILQV  133 (308)
Q Consensus       124 C~G~Qll~~~  133 (308)
                      |.|+|+|+.+
T Consensus        86 C~G~qlLa~~   95 (219)
T PRK03619         86 CNGFQILTEA   95 (219)
T ss_pred             CHHHHHHHHc
Confidence            9999999985

>KOG0623|consensus

Probab=99.53  E-value=2.1e-14  Score=129.83  Aligned_cols=180  Identities=21%  Similarity=0.356  Sum_probs=115.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEech
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      +|+..+|+..|+.+..+....       ++.+.|-+||||-+. ..+.  +... .+...|.+++....|  +|++|||.
T Consensus        15 ~si~nal~hlg~~i~~v~~P~-------DI~~a~rLIfPGVGn-fg~~--~D~L~~~Gf~eplr~Yiesg--kPfmgicv   82 (541)
T KOG0623|consen   15 RSIRNALRHLGFSIKDVQTPG-------DILNADRLIFPGVGN-FGPA--MDVLNRTGFAEPLRKYIESG--KPFMGICV   82 (541)
T ss_pred             HHHHHHHHhcCceeeeccCch-------hhccCceEeecCccc-chHH--HHHHhhhhhHHHHHHHHhcC--CCeEeehh
Confidence            577899999999988665322       366889999999873 3221  2222 235667788888855  99999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |+|.|...+.+..          ...+|+..||-...+     .....-+|.+||                         
T Consensus        83 GlQaLF~gSvE~p----------~skGLgvipg~v~RF-----D~s~k~VPhIGW-------------------------  122 (541)
T KOG0623|consen   83 GLQALFDGSVENP----------PSKGLGVIPGIVGRF-----DASAKIVPHIGW-------------------------  122 (541)
T ss_pred             hHHHHhcccccCC----------CcCcccccccceecc-----cCCCCcCCcccc-------------------------
Confidence            9999875422211          123577777654422     112223455554                         


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                         |-...  .+++.+|...|.+         .+|+.|+|.......  ...+++|++ |+...+..+||.+++..+  +
T Consensus       123 ---Nsc~v--~sd~effg~~p~~---------~~YFVHSyl~~ek~~--~len~~wki-at~kYG~E~Fi~ai~knN--~  183 (541)
T KOG0623|consen  123 ---NSCQV--GSDSEFFGDVPNR---------HVYFVHSYLNREKPK--SLENKDWKI-ATCKYGSESFISAIRKNN--V  183 (541)
T ss_pred             ---ccccc--CCcccccccCCCc---------eEEEEeeeccccccc--CCCCCCceE-eeeccCcHHHHHHHhcCc--e
Confidence               33322  3466677665543         248999995543221  113466765 776777777899998665  9


Q ss_pred             EEEeecCCccCc
Q psy12875        286 VGIQFHPEKNAY  297 (308)
Q Consensus       286 ~GvQFHPE~~~~  297 (308)
                      +++|||||++..
T Consensus       184 ~AtQFHPEKSG~  195 (541)
T KOG0623|consen  184 HATQFHPEKSGE  195 (541)
T ss_pred             eeEecccccccc
Confidence            999999999864

>KOG0370|consensus

Probab=99.52  E-value=1.1e-13  Score=138.09  Aligned_cols=157  Identities=20%  Similarity=0.340  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEec
Q psy12875         45 IAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        45 i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      +.....+.|...|+++.++|++.+..     -.++|||+|++|+  -+|.     ....+.+-+++.+..  ++||+|||
T Consensus       182 ~K~N~IRcL~~RGa~vtVvPw~~~i~-----~~~yDGlflSNGP--GdPe-----~~~~~v~~vr~lL~~--~~PvfGIC  247 (1435)
T KOG0370|consen  182 LKYNQIRCLVKRGAEVTVVPWDYPIA-----KEEYDGLFLSNGP--GDPE-----LCPLLVQNVRELLES--NVPVFGIC  247 (1435)
T ss_pred             chHHHHHHHHHhCceEEEecCCcccc-----ccccceEEEeCCC--CCch-----hhHHHHHHHHHHHhC--CCCeEEEe
Confidence            45577899999999999999876543     2389999999886  3342     233566667777764  39999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|+|+++.+ .|++.+......+..                        ++|                            
T Consensus       248 lGHQllA~A-aGakT~KmKyGNRGh------------------------NiP----------------------------  274 (1435)
T KOG0370|consen  248 LGHQLLALA-AGAKTYKMKYGNRGH------------------------NIP----------------------------  274 (1435)
T ss_pred             hhhHHHHHh-hCCceEEeeccccCC------------------------Ccc----------------------------
Confidence            999999999 999875432210000                        111                            


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEY  283 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~  283 (308)
                                      .......       +..++.++|.|++++..     +|.+++.+-.+ .|+.++   ++.|..+
T Consensus       275 ----------------~~~~~tG-------rc~ITSQNHGYAVD~~t-----Lp~gWk~lFvN~NDgSNE---GI~Hss~  323 (1435)
T KOG0370|consen  275 ----------------CTCRATG-------RCFITSQNHGYAVDPAT-----LPAGWKPLFVNANDGSNE---GIMHSSK  323 (1435)
T ss_pred             ----------------ceeccCc-------eEEEEecCCceeecccc-----ccCCCchheeecccCCCc---eEecCCC
Confidence                            0000000       11124679999999866     78888887777 566655   9999999


Q ss_pred             CEEEEeecCCccCccc
Q psy12875        284 PIVGIQFHPEKNAYEW  299 (308)
Q Consensus       284 p~~GvQFHPE~~~~~~  299 (308)
                      |++.+|||||....+.
T Consensus       324 P~fSvQFHPEat~GP~  339 (1435)
T KOG0370|consen  324 PFFSVQFHPEATPGPH  339 (1435)
T ss_pred             CceeeecCCcCCCCCc
Confidence            9999999999987654

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.45  E-value=5.5e-12  Score=109.14  Aligned_cols=91  Identities=26%  Similarity=0.422  Sum_probs=67.6

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcC-CCCEEEEcCCCCCCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILT-QINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~-~~dGlilpGG~~~~~~~~   95 (308)
                      .+|.|+|+..|.++       .       +.....+++++|++++.+++.+.      .+. ++|+|++|||-|.-    
T Consensus         1 ~~~kvaVi~fpGtN-------~-------d~d~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFSyG----   56 (231)
T COG0047           1 ARPKVAVLRFPGTN-------C-------DYDMAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFSYG----   56 (231)
T ss_pred             CCceEEEEEcCCcC-------c-------hHHHHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCCcc----
Confidence            37999999888764       1       11335788899999999997653      244 69999999997532    


Q ss_pred             chhHH-----HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         96 GYADA-----GRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        96 ~~~~~-----~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +|.+.     ...+.+.++++.++  ++|+||||.|+|+|..+
T Consensus        57 DyLr~Gaiaa~~~v~~~v~~~a~~--g~~vLGICNGfQiL~e~   97 (231)
T COG0047          57 DYLRAGAIAAIAPVMDEVREFAEK--GKPVLGICNGFQILSEA   97 (231)
T ss_pred             cccCcchHHhhHHHHHHHHHHHHC--CCeEEEEcchhHHHHHc
Confidence            34442     23566777788874  49999999999999965

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.43  E-value=3.1e-12  Score=108.44  Aligned_cols=85  Identities=22%  Similarity=0.311  Sum_probs=58.9

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY   97 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~   97 (308)
                      ...|||++-....                .+-.++|++.|+++..+.   +.+    .++++|+|++|||.+.     ..
T Consensus         2 ~~~igVLalqG~~----------------~Eh~~al~~lG~~v~~v~---~~~----~l~~~D~LILPGG~~t-----~~   53 (179)
T PRK13526          2 TQKVGVLAIQGGY----------------QKHADMFKSLGVEVKLVK---FNN----DFDSIDRLVIPGGEST-----TL   53 (179)
T ss_pred             CcEEEEEECCccH----------------HHHHHHHHHcCCcEEEEC---CHH----HHhCCCEEEECCChHH-----HH
Confidence            3679998775331                135689999999877654   333    3678999999998531     11


Q ss_pred             hHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         98 ADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        98 ~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+..  ..+.+.++++.+ +  +|++|||.|||+|+..
T Consensus        54 ~~ll~~~~l~~~Ik~~~~-~--kpilGICaG~qlL~~~   88 (179)
T PRK13526         54 LNLLNKHQIFDKLYNFCS-S--KPVFGTCAGSIILSKG   88 (179)
T ss_pred             HHHhhhcCcHHHHHHHHc-C--CcEEEEcHHHHHHHcc
Confidence            1222  246777887764 3  7999999999999975

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.41  E-value=3.2e-12  Score=115.35  Aligned_cols=100  Identities=20%  Similarity=0.344  Sum_probs=68.0

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      ++++.|+|+..+...              .+.+..++++++|+.+..+++.... .....++++|+|++|||.+..+.. 
T Consensus         1 ~~~~kvaVl~~pG~n--------------~d~e~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l-   64 (261)
T PRK01175          1 MESIRVAVLRMEGTN--------------CEDETVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYI-   64 (261)
T ss_pred             CCCCEEEEEeCCCCC--------------CHHHHHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCccccc-
Confidence            357899999987653              1224478999999999988865321 122247789999999996432221 


Q ss_pred             chhH----HH-HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         96 GYAD----AG-RQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        96 ~~~~----~~-~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+..    .. ..+.+.++++.+++  +||||||+|+|+|+.+
T Consensus        65 ~~g~~~~~~l~~~l~~~Ik~f~~~g--kpVLGICnG~QlLa~~  105 (261)
T PRK01175         65 RAGAIFAARLKAVLRKDIEEFIDEG--YPIIGICNGFQVLVEL  105 (261)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHCC--CeEEEECHHHHHHHHC
Confidence            1111    11 22346678888854  9999999999999975

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.31  E-value=7.9e-12  Score=111.76  Aligned_cols=90  Identities=23%  Similarity=0.292  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH--HHHH-HHHHHHHHHHcCCCccEEE
Q psy12875         46 AASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD--AGRQ-ILHLVDKINEEGVTFPVLG  122 (308)
Q Consensus        46 ~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~--~~~~-~~e~~~~~~~~g~~~PvlG  122 (308)
                      +.++.++|+++|+.+.++++.... ..+..++++|||+||||.+..+.. ....  ..+. +.+.++++.+++  +||+|
T Consensus        12 ~~~~~~al~~aG~~v~~v~~~~~~-~~~~~l~~~d~liipGG~~~~d~l-~~~~~~~~~~~~~~~l~~~~~~g--~pvlG   87 (238)
T cd01740          12 DRDMAYAFELAGFEAEDVWHNDLL-AGRKDLDDYDGVVLPGGFSYGDYL-RAGAIAAASPLLMEEVKEFAERG--GLVLG   87 (238)
T ss_pred             HHHHHHHHHHcCCCEEEEeccCCc-cccCCHhhCCEEEECCCCCccccc-ccccccccChhHHHHHHHHHhCC--CeEEE
Confidence            346788999999999999875431 112246789999999997421110 0000  1112 667788888854  99999


Q ss_pred             echhhhHHHHHh-cCCcc
Q psy12875        123 VCLGFELILQVS-NNDTD  139 (308)
Q Consensus       123 IC~G~Qll~~~~-~gg~~  139 (308)
                      ||.|+|+|+.+. ++|+.
T Consensus        88 IC~G~QlL~~~gll~g~~  105 (238)
T cd01740          88 ICNGFQILVELGLLPGAL  105 (238)
T ss_pred             ECcHHHHHHHcCCCcccc
Confidence            999999999852 44544

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=99.29  E-value=7.8e-11  Score=98.71  Aligned_cols=75  Identities=28%  Similarity=0.525  Sum_probs=58.1

Q ss_pred             HHHHHHHHcC-CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEec
Q psy12875         48 SYVKNIEAAG-ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        48 ~~~~~l~~aG-~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      ...++++++| +++..+..   .+    .++++||||+|||.|     +...+..+  ++++.++++.+.|  +|+||+|
T Consensus        14 EH~~~l~~~~~~e~~~Vk~---~~----dL~~~d~LIiPGGES-----TTi~rL~~~~gl~e~l~~~~~~G--~Pv~GTC   79 (194)
T COG0311          14 EHLEALEKAGGAEVVEVKR---PE----DLEGVDGLIIPGGES-----TTIGRLLKRYGLLEPLREFIADG--LPVFGTC   79 (194)
T ss_pred             HHHHHHHhhcCCceEEEcC---HH----HhccCcEEEecCccH-----HHHHHHHHHcCcHHHHHHHHHcC--CceEEec
Confidence            5578999995 88877753   22    578999999999985     24555443  6788899988855  9999999


Q ss_pred             hhhhHHHHHhcC
Q psy12875        125 LGFELILQVSNN  136 (308)
Q Consensus       125 ~G~Qll~~~~~g  136 (308)
                      .||-+|+....+
T Consensus        80 AGlIlLakei~~   91 (194)
T COG0311          80 AGLILLAKEILD   91 (194)
T ss_pred             hhhhhhhhhhcC
Confidence            999999977344

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=99.28  E-value=2.6e-11  Score=102.54  Aligned_cols=73  Identities=27%  Similarity=0.506  Sum_probs=52.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      ...+.|+++|++++.+...   +    .|+++||||+|||.|     +.+.+..+  .+++.++++.++| ++||||+|.
T Consensus        10 EH~~~l~~lg~~~~~Vr~~---~----dL~~~dgLIiPGGES-----Tti~~ll~~~gL~~~l~~~~~~g-~~Pv~GTCA   76 (188)
T PF01174_consen   10 EHIRMLERLGAEVVEVRTP---E----DLEGLDGLIIPGGES-----TTIGKLLRRYGLFEPLREFIRSG-SKPVWGTCA   76 (188)
T ss_dssp             HHHHHHHHTTSEEEEE-SG---G----GGTT-SEEEE-SS-H-----HHHHHHHHHTTHHHHHHHHHHTT---EEEEETH
T ss_pred             HHHHHHHHcCCCeEEeCCH---H----HHccCCEEEECCCcH-----HHHHHHHHHcCCHHHHHHHHHcC-CCceeehhH
Confidence            5578999999999777632   2    478899999999985     23555443  6788899988843 389999999


Q ss_pred             hhhHHHHH
Q psy12875        126 GFELILQV  133 (308)
Q Consensus       126 G~Qll~~~  133 (308)
                      ||-+|+..
T Consensus        77 GlIlLa~~   84 (188)
T PF01174_consen   77 GLILLAKE   84 (188)
T ss_dssp             HHHHHEEE
T ss_pred             HHHHhhhh
Confidence            99999987

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.17  E-value=1.3e-10  Score=98.67  Aligned_cols=89  Identities=28%  Similarity=0.441  Sum_probs=62.9

Q ss_pred             CCCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875         38 YPNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKINEEG  115 (308)
Q Consensus        38 ~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g  115 (308)
                      .+++|||+. ++++.+++.|+++.+++.+. +.+.+  ...++|+|++ ||.+.   |. +++    ...+.++++ .  
T Consensus         7 IDNyDSFty-NLv~yl~~lg~~v~V~rnd~~~~~~~--~~~~pd~iviSPGPG~---P~-d~G----~~~~~i~~~-~--   72 (191)
T COG0512           7 IDNYDSFTY-NLVQYLRELGAEVTVVRNDDISLELI--EALKPDAIVISPGPGT---PK-DAG----ISLELIRRF-A--   72 (191)
T ss_pred             EECccchHH-HHHHHHHHcCCceEEEECCccCHHHH--hhcCCCEEEEcCCCCC---hH-Hcc----hHHHHHHHh-c--
Confidence            456788864 78999999999999888652 21212  2346899999 77653   21 111    245555555 3  


Q ss_pred             CCccEEEechhhhHHHHHhcCCcccc
Q psy12875        116 VTFPVLGVCLGFELILQVSNNDTDFR  141 (308)
Q Consensus       116 ~~~PvlGIC~G~Qll~~~~~gg~~~~  141 (308)
                      .++||||||+|+|.|+.+ +||++.+
T Consensus        73 ~~~PiLGVCLGHQai~~~-fGg~V~~   97 (191)
T COG0512          73 GRIPILGVCLGHQAIAEA-FGGKVVR   97 (191)
T ss_pred             CCCCEEEECccHHHHHHH-hCCEEEe
Confidence            359999999999999999 9999854

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=99.11  E-value=6.1e-10  Score=100.35  Aligned_cols=99  Identities=22%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY   97 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~   97 (308)
                      ||.++|+.-|...              .+.....+++.+|+++..+.+.+- -.-+..++++|+|+||||.+..+.. .-
T Consensus         1 kpkV~Vl~~pGtN--------------ce~e~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~~~lvipGGFS~gD~l-~s   64 (259)
T PF13507_consen    1 KPKVAVLRFPGTN--------------CERETAAAFENAGFEPEIVHINDL-LSGESDLDDFDGLVIPGGFSYGDYL-RS   64 (259)
T ss_dssp             --EEEEEE-TTEE--------------EHHHHHHHHHCTT-EEEEEECCHH-HTTS--GCC-SEEEE-EE-GGGGTT-ST
T ss_pred             CCEEEEEECCCCC--------------CHHHHHHHHHHcCCCceEEEEEec-ccccCchhhCcEEEECCccCccccc-hH
Confidence            6889999887653              234557899999999999876421 0111268899999999997532221 01


Q ss_pred             hHH-HH------HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         98 ADA-GR------QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        98 ~~~-~~------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+. ..      .+.+.+++++++ .+.|+||||.|||+|...
T Consensus        65 g~~~a~~~~~~~~~~~~i~~f~~~-~g~~vLGIcNGfQiL~~~  106 (259)
T PF13507_consen   65 GAIAAARLLFNSPLMDAIREFLER-PGGFVLGICNGFQILVEL  106 (259)
T ss_dssp             THHHHHHHCCSCCCHHHHHHHHHC-TT-EEEEECHHHHHHCCC
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhc-CCCeEEEEchHhHHHHHh
Confidence            111 11      235667778875 259999999999999965

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=98.88  E-value=1.8e-09  Score=93.02  Aligned_cols=48  Identities=23%  Similarity=0.376  Sum_probs=40.6

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||++|..    ...++....++|+||||+|||+|+.++||++.+.
T Consensus        45 d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGIClG~Q~la~a~Gg~v~~~   96 (187)
T PRK08007         45 QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRA   96 (187)
T ss_pred             CEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECHHHHHHHHHcCCEEEeC
Confidence            36999999999873    3455555678999999999999999999999875

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.84  E-value=9.4e-09  Score=89.40  Aligned_cols=82  Identities=22%  Similarity=0.318  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEe
Q psy12875         44 YIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGV  123 (308)
Q Consensus        44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGI  123 (308)
                      |..+.-.++|+++|++++.+....+.     .+.++|+||||||......  ......+.+.+.++++.+++  +||+||
T Consensus        11 f~y~e~~~~l~~~G~~v~~~s~~~~~-----~l~~~D~lilPGG~~~~~~--~~L~~~~~~~~~i~~~~~~g--~pilgI   81 (198)
T cd03130          11 FYYPENLELLEAAGAELVPFSPLKDE-----ELPDADGLYLGGGYPELFA--EELSANQSMRESIRAFAESG--GPIYAE   81 (198)
T ss_pred             cccHHHHHHHHHCCCEEEEECCCCCC-----CCCCCCEEEECCCchHHHH--HHHHhhHHHHHHHHHHHHcC--CCEEEE
Confidence            33456678999999998887643222     2445999999998521100  11111235677788888754  999999


Q ss_pred             chhhhHHHHHh
Q psy12875        124 CLGFELILQVS  134 (308)
Q Consensus       124 C~G~Qll~~~~  134 (308)
                      |.|||+|...+
T Consensus        82 CgG~qlL~~~~   92 (198)
T cd03130          82 CGGLMYLGESL   92 (198)
T ss_pred             cccHHHHHHHh
Confidence            99999999883

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.84  E-value=3.9e-08  Score=104.54  Aligned_cols=101  Identities=22%  Similarity=0.302  Sum_probs=67.7

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC--------hhHHHHhcCCCCEEEEcCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--------REYYAEILTQINGVVIPGGG   88 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~--------~~~~~~~l~~~dGlilpGG~   88 (308)
                      .||.++|+..|.++       .       +..-..+++++|+.+..+++.+-        .+.+...++++++|++|||.
T Consensus       976 ~kpkvaIl~~pGtN-------c-------e~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857       976 EKPRVVIPVFPGTN-------S-------EYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred             CCCeEEEEECCCCC-------C-------HHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCcc
Confidence            58999999888664       1       22446788889999888876541        11222357899999999998


Q ss_pred             CCCCCCCchhHH----H--HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         89 TGFDHPNGYADA----G--RQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        89 ~~~~~~~~~~~~----~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.-+....-..+    .  ..+.+.++++.+  ++.++||||.|||+|...
T Consensus      1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~--~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857      1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLA--RDGLILGICNGFQALVKS 1090 (1239)
T ss_pred             CcccccchhHHHHHHHhhChHHHHHHHHHHh--CCCcEEEechHHHHHHHc
Confidence            643321001111    1  135566667776  459999999999999876

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.82  E-value=3e-08  Score=106.60  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      .++|.++|+..|..+       .       +.....+++.+|+.+..+++.+-.. -+..|++++||++|||.+.-+   
T Consensus      1053 ~~~p~vail~~pG~N-------~-------~~e~~~Af~~aGf~~~~v~~~dl~~-~~~~l~~~~~lv~~GGFSygD--- 1114 (1310)
T TIGR01735      1053 GVRPKVAILREQGVN-------G-------DREMAAAFDRAGFEAWDVHMSDLLA-GRVHLDEFRGLAACGGFSYGD--- 1114 (1310)
T ss_pred             CCCceEEEEECCCCC-------C-------HHHHHHHHHHhCCCcEEEEEecccc-CCcchhheeEEEEcCCCCCcc---
Confidence            468999999888654       1       2244578889999988888653111 011478899999999975332   


Q ss_pred             chhHHHH----------HHHHHHHHHHHcCCCccEEEechhhhHHH
Q psy12875         96 GYADAGR----------QILHLVDKINEEGVTFPVLGVCLGFELIL  131 (308)
Q Consensus        96 ~~~~~~~----------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~  131 (308)
                       +....+          .+.+.++++.++ .+.++||||.|||+|.
T Consensus      1115 -~lgsg~~~a~~i~~~~~~~~~~~~f~~~-~d~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735      1115 -VLGAGKGWAKSILFNPRLRDQFQAFFKR-PDTFSLGVCNGCQMLS 1158 (1310)
T ss_pred             -chhHHHHHHHHHHhChHHHHHHHHHHhC-CCceEEEecHHHHHHH
Confidence             222221          345556666633 4599999999999999

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.81  E-value=3.9e-08  Score=105.99  Aligned_cols=97  Identities=19%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      .+|.++|+..|..+       .       +.....+++.+|+.+..+.+.+-.. -+..++++++|++|||.+.-+    
T Consensus      1034 ~~pkv~il~~pG~N-------~-------~~e~~~Af~~aG~~~~~v~~~dl~~-~~~~l~~~~~l~~~GGFS~gD---- 1094 (1290)
T PRK05297       1034 ARPKVAILREQGVN-------S-------HVEMAAAFDRAGFDAIDVHMSDLLA-GRVTLEDFKGLVACGGFSYGD---- 1094 (1290)
T ss_pred             CCCeEEEEECCCCC-------C-------HHHHHHHHHHcCCCeEEEEeecCcC-CCCChhhCcEEEECCccCCcc----
Confidence            47899999887654       1       2344678999999998887653110 012478999999999975432    


Q ss_pred             hhHHHH----------HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         97 YADAGR----------QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        97 ~~~~~~----------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +....+          .+.+.++++.++ ++.++||||.|||+|...
T Consensus      1095 ~lgsg~~~a~~~~~n~~~~~~~~~f~~~-~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297       1095 VLGAGEGWAKSILFNPRLRDQFEAFFAR-PDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred             cchHHHHHHHHhhccHHHHHHHHHHHhC-CCceEEEEcHHHHHHHHh
Confidence            222211          345556665643 459999999999999976

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.78  E-value=6e-08  Score=103.82  Aligned_cols=98  Identities=21%  Similarity=0.254  Sum_probs=67.3

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      ..+|.++|+..|..+              .+.....+++.+|+.+..+++.+-. .-...|++++||++|||.+.-+.  
T Consensus      1035 ~~~pkVaVl~~pGtN--------------~~~e~~~Af~~aGf~~~~V~~~dl~-~~~~~L~~~~glv~pGGFSyGD~-- 1097 (1307)
T PLN03206       1035 TSKPKVAIIREEGSN--------------GDREMAAAFYAAGFEPWDVTMSDLL-NGRISLDDFRGIVFVGGFSYADV-- 1097 (1307)
T ss_pred             CCCCeEEEEECCCCC--------------CHHHHHHHHHHcCCceEEEEeeecc-cccccccceeEEEEcCcCCCccc--
Confidence            357999999887654              1234467899999999888765311 11224789999999999753322  


Q ss_pred             chhHHH----------HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         96 GYADAG----------RQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        96 ~~~~~~----------~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                        .+..          ..+.+.++++.++ .+.++||||.|||+|...
T Consensus      1098 --l~sg~~wa~~i~~n~~~~~~~~~f~~~-~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206       1098 --LDSAKGWAGSIRFNEPLLQQFQEFYNR-PDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred             --cchHHHHHHHHHhChHHHHHHHHHHhC-CCceEEEEcHHHHHHHHc
Confidence              2211          2445556677743 359999999999999865

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=98.78  E-value=6.8e-09  Score=90.04  Aligned_cols=48  Identities=27%  Similarity=0.334  Sum_probs=40.0

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||++|..    ...++....++|+||||||||+|+.++||+|.+.
T Consensus        45 d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGIClG~Qlla~~lGg~V~~~   96 (195)
T PRK07649         45 DFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRA   96 (195)
T ss_pred             CEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcHHHHHHHHHcCCEEeeC
Confidence            36999999999763    3344555678999999999999999999999875

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=98.76  E-value=7.4e-09  Score=89.48  Aligned_cols=48  Identities=25%  Similarity=0.356  Sum_probs=40.0

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||++|..    ...++....++|+||||+|||+|+.++||+|.+.
T Consensus        45 ~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~G~Qlla~~~GG~v~~~   96 (191)
T PRK06774         45 SHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGARVVRA   96 (191)
T ss_pred             CeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEeC
Confidence            35999999998763    3455555779999999999999999999999774

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=98.75  E-value=7.9e-09  Score=95.05  Aligned_cols=48  Identities=23%  Similarity=0.400  Sum_probs=39.8

Q ss_pred             cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      +++.+++||++|..    +..+++. ..++|++|||||||||+.|+|++..++
T Consensus       222 DGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km  274 (368)
T COG0505         222 DGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM  274 (368)
T ss_pred             CEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec
Confidence            47999999999984    4455555 445699999999999999999998776

>KOG3210|consensus

Probab=98.74  E-value=6.5e-08  Score=79.80  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             hcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc
Q psy12875         75 ILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD  139 (308)
Q Consensus        75 ~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~  139 (308)
                      +++++||+|+|||.+.     .+...  ...+++.+.++..++ .+|+||.|.||-+|..-..|++.
T Consensus        53 D~aq~DaLIIPGGEST-----~mslia~~tgL~d~L~~fVhn~-~k~~WGTCAGmI~LS~ql~nek~  113 (226)
T KOG3210|consen   53 DLAQCDALIIPGGEST-----AMSLIAERTGLYDDLYAFVHNP-SKVTWGTCAGMIYLSQQLSNEKK  113 (226)
T ss_pred             HHhhCCEEEecCCchh-----HHHHHHhhhhhHHHHHHHhcCC-CccceeechhhhhhhhhhcCCcc
Confidence            5789999999999852     23322  124566666666653 59999999999999877455554

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=98.73  E-value=1e-08  Score=88.42  Aligned_cols=47  Identities=26%  Similarity=0.379  Sum_probs=39.7

Q ss_pred             ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.++|||+.|..    ...+++...++|+||||+|||+|+.++||+|.+.
T Consensus        46 ~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~G~Qll~~~~GG~v~~~   96 (188)
T TIGR00566        46 LIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRA   96 (188)
T ss_pred             EEEEcCCCCChhhcchhHHHHHHhccCCCEEEECHHHHHHHHHcCCEEeeC
Confidence            5899999998763    4456655678999999999999999999999774

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.71  E-value=8.3e-08  Score=83.19  Aligned_cols=73  Identities=18%  Similarity=0.313  Sum_probs=54.1

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      ++.++++..|++++.+....+       +.++|+|+||||.+ ...   ....  ...+.+.++++.+++  +||+|||.
T Consensus        14 ~l~~~~~~~G~~~~~~~~~~~-------~~~~d~lilpGg~~-~~~---~~~~~~~~~~~~~i~~~~~~g--~pvlgiC~   80 (194)
T cd01750          14 DLDPLAREPGVDVRYVEVPEG-------LGDADLIILPGSKD-TIQ---DLAWLRKRGLAEAIKNYARAG--GPVLGICG   80 (194)
T ss_pred             HHHHHHhcCCceEEEEeCCCC-------CCCCCEEEECCCcc-hHH---HHHHHHHcCHHHHHHHHHHCC--CcEEEECH
Confidence            567888899999998876543       56889999999973 111   1111  123567778877754  99999999


Q ss_pred             hhhHHHHH
Q psy12875        126 GFELILQV  133 (308)
Q Consensus       126 G~Qll~~~  133 (308)
                      |||+|+..
T Consensus        81 G~qlL~~~   88 (194)
T cd01750          81 GYQMLGKY   88 (194)
T ss_pred             HHHHhhhh
Confidence            99999988

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>CHL00101 trpG anthranilate synthase component 2

Probab=98.65  E-value=3e-08  Score=85.63  Aligned_cols=48  Identities=23%  Similarity=0.322  Sum_probs=38.9

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||+.+..    ...++....++|+||||+|||+|+.++||+|.+.
T Consensus        45 dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~   96 (190)
T CHL00101         45 RHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKA   96 (190)
T ss_pred             CEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEEC
Confidence            35889999998753    2233445678999999999999999999999875

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=98.65  E-value=2.9e-08  Score=85.98  Aligned_cols=47  Identities=30%  Similarity=0.456  Sum_probs=39.5

Q ss_pred             ceeeecCCCCcc----hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSS----LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~----~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++++|||..|.    ....++....++|+||||+|||+|+.++||+|.+.
T Consensus        46 ~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlia~a~Gg~v~~~   96 (193)
T PRK08857         46 HLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRA   96 (193)
T ss_pred             EEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcHHHHHHHHHhCCEEEeC
Confidence            589999998875    24455556779999999999999999999999775

>PLN02335 anthranilate synthase

Probab=98.63  E-value=3.3e-08  Score=87.48  Aligned_cols=47  Identities=21%  Similarity=0.377  Sum_probs=39.2

Q ss_pred             ceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.++|||+.|..    ...+++...++|+||||||||+|+.++||++.+.
T Consensus        65 ~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIClG~QlLa~alGg~v~~~  115 (222)
T PLN02335         65 GVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRS  115 (222)
T ss_pred             EEEEcCCCCChhhccchHHHHHHhCCCCCEEEecHHHHHHHHHhCCEEEeC
Confidence            5999999999863    3344455678999999999999999999998765

>PHA03366 FGAM-synthase; Provisional

Probab=98.63  E-value=5.5e-07  Score=97.13  Aligned_cols=101  Identities=16%  Similarity=0.183  Sum_probs=67.4

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      ..||.++|+..+..+       .       +.....+++++|+.+..+...+-.. -+ .+++++||++|||.+..+...
T Consensus      1026 ~~~prVaIl~~pG~N-------~-------~~e~~~Af~~aGf~~~~v~~~dL~~-~~-~l~~f~glv~~GGFS~gD~l~ 1089 (1304)
T PHA03366       1026 DKRHRVAVLLLPGCP-------G-------PHALLAAFTNAGFDPYPVSIEELKD-GT-FLDEFSGLVIGGSSGAEDSYT 1089 (1304)
T ss_pred             CCCCeEEEEECCCCC-------C-------HHHHHHHHHHcCCceEEEEeecCCC-CC-ccccceEEEEcCCCCCccccc
Confidence            458999999887654       1       2344678889999998888643111 01 278999999999986433320


Q ss_pred             chhHHH------HHHHHHHHHHHHcCCCccEEEech-hhhHHHHH
Q psy12875         96 GYADAG------RQILHLVDKINEEGVTFPVLGVCL-GFELILQV  133 (308)
Q Consensus        96 ~~~~~~------~~~~e~~~~~~~~g~~~PvlGIC~-G~Qll~~~  133 (308)
                      .-..+.      ..+.+.++++.++ .+.++||||. |+|+|+..
T Consensus      1090 ~~~~~a~~il~n~~~~~~~~~f~~r-~dt~~LGiCN~G~Q~L~~l 1133 (1304)
T PHA03366       1090 GARAAVAALLSNPAVRDALLRFLNR-PDTFSLGCGELGCQILFAL 1133 (1304)
T ss_pred             HHHHHHHHhhhchHHHHHHHHHHhC-CCCeEEEeCcHHHHHHHHc
Confidence            011111      2445566666653 4689999999 99999976

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=98.63  E-value=2.8e-08  Score=94.62  Aligned_cols=81  Identities=19%  Similarity=0.217  Sum_probs=52.9

Q ss_pred             ccEEEechhhhHHH-HH--hcCCccc--ccccccc---c-cccceeeecCCCCcch----hhhHhhhcCCCCeeeeehhH
Q psy12875        118 FPVLGVCLGFELIL-QV--SNNDTDF--RKSCKVQ---Q-VNLNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGF  184 (308)
Q Consensus       118 ~PvlGIC~G~Qll~-~~--~~gg~~~--~~~~~~~---~-~~~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~  184 (308)
                      .-|.-+..|..... ..  ..|-...  ....+.+   . ...++.+++||++|..    .+.+++...++|+|||||||
T Consensus       241 ~~IvviD~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGICLGh  320 (415)
T PLN02771        241 YHVIAYDFGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGH  320 (415)
T ss_pred             CEEEEECCChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEcHHH
Confidence            35888888885322 21  1343321  1111111   1 1247999999999874    33444444689999999999


Q ss_pred             HHHHHHhCCccccc
Q psy12875        185 ELILQVSNNDTDFR  198 (308)
Q Consensus       185 Qll~~~~G~~v~~~  198 (308)
                      |+|+.++||++.+.
T Consensus       321 QlLa~AlGGkv~K~  334 (415)
T PLN02771        321 QLLGQALGGKTFKM  334 (415)
T ss_pred             HHHHHhcCCeEEEC
Confidence            99999999998775

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=98.62  E-value=3.6e-08  Score=85.13  Aligned_cols=48  Identities=19%  Similarity=0.328  Sum_probs=38.5

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||+.|..    ...++....++|+||||||||+|+.++||+|.+.
T Consensus        45 d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~   96 (190)
T PRK06895         45 SHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNL   96 (190)
T ss_pred             CEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEcHHHHHHHHHhCCeEeec
Confidence            35888999996543    3455555668999999999999999999999764

>PRK05670 anthranilate synthase component II; Provisional

Probab=98.60  E-value=4.2e-08  Score=84.64  Aligned_cols=48  Identities=25%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+++||+++..    ...++....++|+||||+|||+|+.++||+|.+.
T Consensus        45 dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIClG~Qlla~alGg~v~~~   96 (189)
T PRK05670         45 DAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRA   96 (189)
T ss_pred             CEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEec
Confidence            35889999988752    3455555668999999999999999999999775

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.51  E-value=1.9e-06  Score=92.70  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      ..||.|+|+..+..+              .+.....+++++|+.+..+...+-...  ..+++++||+++||.+.-++. 
T Consensus       927 ~~~p~VaIl~~pG~N--------------~~~e~~~Af~~aGf~~~~v~~~dl~~~--~~l~~f~glv~~Ggfsy~D~l-  989 (1202)
T TIGR01739       927 DPRHQVAVLLLPGQS--------------VPHGLLAALTNAGFDPRIVSITELKKT--DFLDTFSGLIIGGASGTLDSE-  989 (1202)
T ss_pred             CCCCeEEEEeCCCCC--------------CHHHHHHHHHHcCCceEEEEeccCCCC--CchhheEEEEEcCcCCCCccc-
Confidence            347999999887654              123446788999999988886541110  135789999999997543331 


Q ss_pred             chhH-HH------HHHHHHHHHHHHcCCCccEEEech-hhhHHHHH
Q psy12875         96 GYAD-AG------RQILHLVDKINEEGVTFPVLGVCL-GFELILQV  133 (308)
Q Consensus        96 ~~~~-~~------~~~~e~~~~~~~~g~~~PvlGIC~-G~Qll~~~  133 (308)
                      .-.+ +.      ..+.+.+++++++ .+.++||||. |+|+|...
T Consensus       990 gsg~~~a~~il~n~~~~~~~~~f~~r-~dtf~LGiCN~G~Q~L~~l 1034 (1202)
T TIGR01739       990 VGARALAAALLRNQAFLRDLLTFLNR-PDTFSLGFGELGCQLLLAL 1034 (1202)
T ss_pred             hHHHHHHHHhhcchHHHHHHHHHHhC-CCceEEEeCcHHHHHHHHc
Confidence            1111 11      2455556666653 4699999999 99999976

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=98.45  E-value=1.8e-07  Score=82.39  Aligned_cols=48  Identities=23%  Similarity=0.335  Sum_probs=38.3

Q ss_pred             cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||+.|..    ...+++. ..++|+||||+|||+|+.++||+|.+.
T Consensus        48 dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~  100 (214)
T PRK07765         48 DGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRA  100 (214)
T ss_pred             CEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC
Confidence            35888899987752    3455554 468999999999999999999999764

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=98.40  E-value=2.3e-07  Score=91.96  Aligned_cols=47  Identities=21%  Similarity=0.376  Sum_probs=38.6

Q ss_pred             ceeeecCCCCcchh----hhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSLF----SQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~~----~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++++|||++|...    ..++....++|+||||||||+|+.++||+|.+.
T Consensus        51 ~IIlSpGPg~p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~  101 (531)
T PRK09522         51 VLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQA  101 (531)
T ss_pred             EEEEcCCCCChhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeC
Confidence            59999999998742    233334568999999999999999999999764

>PRK05637 anthranilate synthase component II; Provisional

Probab=98.39  E-value=2.9e-07  Score=80.68  Aligned_cols=47  Identities=23%  Similarity=0.422  Sum_probs=37.8

Q ss_pred             cceeeecCCCCcchh----hhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        151 LNLKFLPGAKRSSLF----SQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       151 ~~l~~~pg~~~~~~~----~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      ..+.++|||+.|...    ..++....++|+||||||||+|+.++||+|.+
T Consensus        46 ~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIClG~Qlla~alGG~V~~   96 (208)
T PRK05637         46 DLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEP   96 (208)
T ss_pred             CEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcHHHHHHHHHcCCeecc
Confidence            359999999998632    23433345799999999999999999999975

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=98.37  E-value=3.5e-07  Score=86.21  Aligned_cols=48  Identities=19%  Similarity=0.294  Sum_probs=39.4

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||++|..    ...+++...++|+||||+|||+|+.++||++.+.
T Consensus       216 DGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl  267 (358)
T TIGR01368       216 DGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKM  267 (358)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecc
Confidence            57999999999863    3345554448999999999999999999998765

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=98.37  E-value=3.8e-07  Score=94.55  Aligned_cols=47  Identities=26%  Similarity=0.396  Sum_probs=37.7

Q ss_pred             cceeeecCCCCcch-------hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL-------FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~-------~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++++|||++|..       ...+.+. .++||||||||||+|++++||+|.+.
T Consensus       133 d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~  186 (918)
T PLN02889        133 DNIVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGARIVHA  186 (918)
T ss_pred             CEEEECCCCCCccchHHHHHHHHHHHHh-CCCcEEEEcHHHHHHHHhcCceEEeC
Confidence            36999999999952       1222322 47999999999999999999999886

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=98.36  E-value=3.9e-07  Score=85.76  Aligned_cols=48  Identities=25%  Similarity=0.445  Sum_probs=38.6

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||++|..    ...+++...++|+||||+|||+|+.++||++.+.
T Consensus       210 DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~Gg~v~kl  261 (354)
T PRK12838        210 DGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTEKL  261 (354)
T ss_pred             CEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhCCEEecC
Confidence            46899999998763    3344544344999999999999999999999875

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=98.35  E-value=4.6e-07  Score=77.76  Aligned_cols=47  Identities=23%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             ceeeecCCCCcch---hhhHh-hhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSL---FSQIN-EEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~---~~~i~-~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.+++||+.+..   ...++ ....++|+||||+|||+|+.++||++.+.
T Consensus        45 gvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~   95 (184)
T cd01743          45 AIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRA   95 (184)
T ss_pred             EEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeC
Confidence            5788899988652   22333 34568999999999999999999998764

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=98.31  E-value=3e-07  Score=79.15  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=38.4

Q ss_pred             cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+++|+..+..    ...+++. ..++|+||||+|||+|+.++|++|.+.
T Consensus        44 d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~   96 (192)
T PF00117_consen   44 DGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQILAHALGGKVVPS   96 (192)
T ss_dssp             SEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEE
T ss_pred             CEEEECCcCCccccccccccccccccccceEEEEEeehhhhhHHhcCCccccc
Confidence            46899999998773    2334443 459999999999999999999998764

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=98.28  E-value=7.3e-07  Score=84.60  Aligned_cols=48  Identities=15%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||++|..    .+.+++. ..++|+||||||||+|+.++||++.+.
T Consensus       235 dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~  287 (382)
T CHL00197        235 DGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKL  287 (382)
T ss_pred             CEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEecc
Confidence            46999999999863    2334443 358999999999999999999998764

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.27  E-value=1.7e-06  Score=84.51  Aligned_cols=73  Identities=16%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             HHHHHHHcCC-eEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         49 YVKNIEAAGA-RVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        49 ~~~~l~~aG~-~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      .+++++.+|. .+.+++... .+    .+.++|+||+|||. ....    ......+.+.++++     ++||||||.||
T Consensus        11 v~~al~~lg~~~~~vv~~~~-~~----~l~~~D~lILPGG~-~~~~----~~l~~~l~~~i~~~-----g~pvlGICgG~   75 (476)
T PRK06278         11 SLPCFENFGNLPTKIIDENN-IK----EIKDLDGLIIPGGS-LVES----GSLTDELKKEILNF-----DGYIIGICSGF   75 (476)
T ss_pred             HHHHHHHhcCCCcEEEEeCC-hH----HhccCCEEEECCCc-hhhc----chHHHHHHHHHHHc-----CCeEEEEcHHH
Confidence            3456777776 555554332 22    46789999999974 1111    11123444444433     38999999999


Q ss_pred             hHHHHHhcC
Q psy12875        128 ELILQVSNN  136 (308)
Q Consensus       128 Qll~~~~~g  136 (308)
                      |+|+..+..
T Consensus        76 QmLg~~~~e   84 (476)
T PRK06278         76 QILSEKIDI   84 (476)
T ss_pred             Hhccccccc
Confidence            999988433

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=98.27  E-value=1.4e-06  Score=73.98  Aligned_cols=58  Identities=14%  Similarity=0.104  Sum_probs=42.2

Q ss_pred             cCCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcc
Q psy12875         76 LTQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD  139 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~  139 (308)
                      .+++||+|+||.+....+.  -+|-+....+++++++     +.+|+|++|.|+|....+ ++|..
T Consensus        60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~-----~v~stl~iCWgaqaal~~-~yGi~  119 (175)
T cd03131          60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKT-----HVTSTLFSCWAAMAALYY-FYGIK  119 (175)
T ss_pred             ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHH-----hCcchHHHHHHHHHHHHH-HcCcc
Confidence            5789999999997533221  0233345567777763     458999999999999999 88864

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=98.24  E-value=1e-06  Score=83.19  Aligned_cols=48  Identities=21%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||++|..    ...+++. ..++|+||||+|||+|+.++||++.+.
T Consensus       220 DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl  272 (360)
T PRK12564        220 DGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKM  272 (360)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEecc
Confidence            46899999998763    3345544 357999999999999999999998765

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=98.24  E-value=3.9e-06  Score=73.74  Aligned_cols=98  Identities=14%  Similarity=0.175  Sum_probs=66.4

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc-CCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA-GARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      .+|.|.+.+.-+..          .+.|+ .++.+++++. |+++..+.... ..+..+.+.++|+|++|||.  ..   
T Consensus        30 ~~~~i~~IptAs~~----------~~~~~-~~~~~a~~~l~G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~--~~---   92 (212)
T cd03146          30 ARPKVLFVPTASGD----------RDEYT-ARFYAAFESLRGVEVSHLHLFD-TEDPLDALLEADVIYVGGGN--TF---   92 (212)
T ss_pred             CCCeEEEECCCCCC----------HHHHH-HHHHHHHhhccCcEEEEEeccC-cccHHHHHhcCCEEEECCch--HH---
Confidence            45778877665432          23454 4788999999 99988776543 22334567899999999984  11   


Q ss_pred             chhHH-HH-HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         96 GYADA-GR-QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        96 ~~~~~-~~-~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+.+. .+ .+.+.+++++++|  +|++|+|.|+|++...
T Consensus        93 ~~~~~l~~~~l~~~l~~~~~~g--~~i~G~SAGa~i~~~~  130 (212)
T cd03146          93 NLLAQWREHGLDAILKAALERG--VVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHHHHHHcCHHHHHHHHHHCC--CEEEEECHhHHhhCCC
Confidence            12222 22 3456667777644  9999999999999974

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=98.23  E-value=1.1e-06  Score=87.46  Aligned_cols=48  Identities=25%  Similarity=0.358  Sum_probs=39.7

Q ss_pred             cceeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||+.|..    ...++....++|+||||+|||+|+.++||+|.+.
T Consensus        46 d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~   97 (534)
T PRK14607         46 SHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKIVHA   97 (534)
T ss_pred             CEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEcHHHHHHHHHcCCeEecC
Confidence            35999999998762    3455555678999999999999999999999775

>PRK05665 amidotransferase; Provisional

Probab=98.22  E-value=1.5e-06  Score=77.78  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=34.3

Q ss_pred             cceeeecCCCCcc--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSS--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+.-||....        +...|++. ..++|+||||||||+|++++||+|.+.
T Consensus        59 dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~  115 (240)
T PRK05665         59 DAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERA  115 (240)
T ss_pred             CEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC
Confidence            3466666655432        12233332 568999999999999999999999875

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.22  E-value=5e-06  Score=81.20  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch-hHHH--HHHHHHHHHHHHcCCCccEEEe
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY-ADAG--RQILHLVDKINEEGVTFPVLGV  123 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~-~~~~--~~~~e~~~~~~~~g~~~PvlGI  123 (308)
                      ....+.|++.|++++.+....+.     .+.++|+|++|||...     .+ .+..  +.+.+.++++.++|  +||+||
T Consensus       261 ~e~~~~L~~~g~~~~~~~~~~~~-----~l~~~D~lilpGG~~~-----~~~~~l~~~~~~~~~i~~~~~~g--~~i~ai  328 (451)
T PRK01077        261 PENLELLRAAGAELVFFSPLADE-----ALPDCDGLYLGGGYPE-----LFAAELAANTSMRASIRAAAAAG--KPIYAE  328 (451)
T ss_pred             HHHHHHHHHCCCEEEEeCCcCCC-----CCCCCCEEEeCCCchh-----hHHHHHhhCchhHHHHHHHHHcC--CCEEEE
Confidence            35568889999998887543222     3568999999999521     12 1121  24677788888855  899999


Q ss_pred             chhhhHHHHH
Q psy12875        124 CLGFELILQV  133 (308)
Q Consensus       124 C~G~Qll~~~  133 (308)
                      |.|+|+|...
T Consensus       329 CgG~~~L~~~  338 (451)
T PRK01077        329 CGGLMYLGES  338 (451)
T ss_pred             cHHHHHHHhh
Confidence            9999999988

>PRK09065 glutamine amidotransferase; Provisional

Probab=98.19  E-value=2e-06  Score=76.95  Aligned_cols=48  Identities=13%  Similarity=0.341  Sum_probs=35.3

Q ss_pred             cceeeecCCCCcc--------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSS--------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~--------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++.||....        ....++. ...++|+||||+|||+|+.++||+|.+.
T Consensus        56 dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~  112 (237)
T PRK09065         56 AGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYN  112 (237)
T ss_pred             CEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccC
Confidence            3577777776532        1233443 2468999999999999999999999774

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.16  E-value=6.2e-06  Score=80.48  Aligned_cols=75  Identities=21%  Similarity=0.384  Sum_probs=55.0

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH-H--HHHHHHHHHHHHHcCCCccEEEe
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD-A--GRQILHLVDKINEEGVTFPVLGV  123 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~-~--~~~~~e~~~~~~~~g~~~PvlGI  123 (308)
                      +.-.+.|++.|++++.+....+.     .+.++|+|+||||..-     .+.. .  .+.+.+.++++.++|  .||+|+
T Consensus       260 ~~~~~~L~~~g~~~~~~~~~~d~-----~l~~~d~l~ipGG~~~-----~~~~~l~~~~~~~~~i~~~~~~G--~pv~g~  327 (449)
T TIGR00379       260 QDNLDALTHNAAELVPFSPLEDT-----ELPDVDAVYIGGGFPE-----LFAEELSQNQALRDSIKTFIHQG--LPIYGE  327 (449)
T ss_pred             HHHHHHHHHCCCEEEEECCccCC-----CCCCCCEEEeCCcHHH-----HHHHHHHhhhHHHHHHHHHHHcC--CCEEEE
Confidence            45578899999999888653322     2558999999999621     1222 2  124667788888855  999999


Q ss_pred             chhhhHHHHH
Q psy12875        124 CLGFELILQV  133 (308)
Q Consensus       124 C~G~Qll~~~  133 (308)
                      |-|||+|...
T Consensus       328 CgG~~~L~~~  337 (449)
T TIGR00379       328 CGGLMYLSQS  337 (449)
T ss_pred             cHHHHHHHhh
Confidence            9999999988

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=98.16  E-value=2.2e-06  Score=73.26  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=37.0

Q ss_pred             cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+++||+.+..    ...+++. ..++|+||||+|||+|+.++||++...
T Consensus        41 dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~   93 (178)
T cd01744          41 DGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKM   93 (178)
T ss_pred             CEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecC
Confidence            35888889887653    3344443 457999999999999999999998664

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=98.08  E-value=2.8e-06  Score=86.82  Aligned_cols=48  Identities=25%  Similarity=0.411  Sum_probs=39.1

Q ss_pred             cceeeecCCCCcch---hhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL---FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++++|||+.+..   ...+++ ...++|+||||+|||+|+.++||+|.+.
T Consensus       561 DgLILsgGPGsp~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~  612 (717)
T TIGR01815       561 DLVVLSPGPGRPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVL  612 (717)
T ss_pred             CEEEEcCCCCCchhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEEC
Confidence            46899999999863   334444 3568999999999999999999998774

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=98.08  E-value=1.4e-05  Score=73.07  Aligned_cols=140  Identities=20%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             CCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccccccccccccee
Q psy12875         77 TQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLK  154 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~  154 (308)
                      +.+||+|+||-+...-+-  -+|-+....++++.++     +-++.+.||.|.|.-.....|=....             
T Consensus        97 ~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~-----~v~stl~iCWgAqAaLy~~yGI~K~~-------------  158 (298)
T PF04204_consen   97 RKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKT-----HVTSTLFICWGAQAALYHFYGIPKYP-------------  158 (298)
T ss_dssp             S-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHH-----HEEEEEEETHHHHHHHHHHH----EE-------------
T ss_pred             CCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHH-----cCCcchhhhHHHHHHHHHHcCCCccc-------------
Confidence            479999999987432210  0233334466666654     34899999999998554425543211             


Q ss_pred             eecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhc
Q psy12875        155 FLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFY  234 (308)
Q Consensus       155 ~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (308)
                                        ...+++||=            +             +.+.    ...++|++++++.+.+   
T Consensus       159 ------------------l~~KlfGVf------------~-------------~~~~----~~~~pLl~Gfdd~f~~---  188 (298)
T PF04204_consen  159 ------------------LPEKLFGVF------------E-------------HRVL----DPDHPLLRGFDDTFFA---  188 (298)
T ss_dssp             ------------------EEEEEEEEE------------E-------------EEES-----SS-GGGTT--SEEEE---
T ss_pred             ------------------CCCcceece------------e-------------eecc----CCCChhhcCCCccccC---
Confidence                              012344542            1             1101    2478999999876532   


Q ss_pred             cCCceeeccce--eeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        235 QKPLTHNNHIW--CITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       235 ~~~~v~~~H~~--~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                             =||-  .++.+.+   ...++++|+|.|++.+   +..+..++...+=+|.|||....
T Consensus       189 -------PhSR~t~i~~~~i---~~~~~L~vLa~s~~~G---~~l~~~~d~r~vfi~GH~EYd~~  240 (298)
T PF04204_consen  189 -------PHSRYTEIDRDDI---KKAPGLEVLAESEEAG---VFLVASKDGRQVFITGHPEYDAD  240 (298)
T ss_dssp             -------EEEEEEE--HHHH---CT-TTEEEEEEETTTE---EEEEEECCCTEEEE-S-TT--TT
T ss_pred             -------CcccccCCCHHHH---hcCCCcEEEeccCCcc---eEEEEcCCCCEEEEeCCCccChh
Confidence                   3332  2333332   1368999999998877   66777777777789999999854

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>PRK00784 cobyric acid synthase; Provisional

Probab=98.08  E-value=5.5e-06  Score=81.70  Aligned_cols=72  Identities=22%  Similarity=0.322  Sum_probs=51.4

Q ss_pred             HHHHHHH-cCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEech
Q psy12875         49 YVKNIEA-AGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        49 ~~~~l~~-aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      -.+.|++ +|++++.+....       .+..+|||+||||.....    -.++.+  .+.+.++++.++|  +||+|||.
T Consensus       267 nl~~l~~~~g~~v~~~s~~~-------~l~~~d~lilpGg~~~~~----~~~~~~~~~l~~~i~~~~~~g--~pilg~C~  333 (488)
T PRK00784        267 DFDPLRAEPGVDVRYVRPGE-------PLPDADLVILPGSKNTIA----DLAWLRESGWDEAIRAHARRG--GPVLGICG  333 (488)
T ss_pred             ChHHHhhcCCCeEEEECCcc-------ccccCCEEEECCccchHH----HHHHHHHcCHHHHHHHHHHcC--CeEEEECH
Confidence            3577776 899888775321       356899999999973211    112222  3667788888755  99999999


Q ss_pred             hhhHHHHH
Q psy12875        126 GFELILQV  133 (308)
Q Consensus       126 G~Qll~~~  133 (308)
                      |||+|+..
T Consensus       334 G~~~L~~~  341 (488)
T PRK00784        334 GYQMLGRR  341 (488)
T ss_pred             HHHHHhhh
Confidence            99999988

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=98.07  E-value=3.5e-06  Score=86.74  Aligned_cols=48  Identities=27%  Similarity=0.388  Sum_probs=37.2

Q ss_pred             cceeeecCCCCcch---hhhHhhh-----cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-----GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-----~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||++|..   ...+.+.     ..++|+||||+|||+|+.++||+|.+.
T Consensus        55 D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~  110 (742)
T TIGR01823        55 DAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRL  110 (742)
T ss_pred             CEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEEC
Confidence            36999999999852   2222221     136999999999999999999999775

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=98.07  E-value=5.6e-06  Score=71.26  Aligned_cols=47  Identities=17%  Similarity=0.295  Sum_probs=34.2

Q ss_pred             ceeeecCCCCcc---hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSS---LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~---~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.+.+|+..+.   ....++. ...++|+||||+|||+|+.++||++.+.
T Consensus        44 glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~   94 (188)
T TIGR00888        44 GIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRA   94 (188)
T ss_pred             EEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecC
Confidence            466666665433   1234444 3568999999999999999999998764

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>KOG1224|consensus

Probab=98.06  E-value=9.5e-06  Score=78.08  Aligned_cols=92  Identities=24%  Similarity=0.417  Sum_probs=52.2

Q ss_pred             CCCCccchHHHHHHHHHH-cCCeEEEEEcCC--ChhHHHHhc--CCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy12875         38 YPNYTSYIAASYVKNIEA-AGARVVPILIGQ--DREYYAEIL--TQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKI  111 (308)
Q Consensus        38 ~~~~~~~i~~~~~~~l~~-aG~~~~~i~~~~--~~~~~~~~l--~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~  111 (308)
                      .+.+++|.. .++++|+. .|..++.+...+  ..+....+.  -.+|+|++ ||.++..-+  .+...   +.++..++
T Consensus        20 ID~YDSyTf-Niy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a--~d~gI---~~rl~~~~   93 (767)
T KOG1224|consen   20 IDNYDSYTF-NIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCA--ADIGI---CLRLLLEC   93 (767)
T ss_pred             Eecccchhh-hHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCcH--HHHHH---HHHHHHhc
Confidence            345678865 55677765 454444443322  122222222  24899999 776643212  12111   22222332


Q ss_pred             HHcCCCccEEEechhhhHHHHHhcCCccc
Q psy12875        112 NEEGVTFPVLGVCLGFELILQVSNNDTDF  140 (308)
Q Consensus       112 ~~~g~~~PvlGIC~G~Qll~~~~~gg~~~  140 (308)
                          +++||||||+|||.|+.+ -|..+.
T Consensus        94 ----~~iPilGICLGfQal~l~-hGA~v~  117 (767)
T KOG1224|consen   94 ----RDIPILGICLGFQALGLV-HGAHVV  117 (767)
T ss_pred             ----CCCceeeeehhhHhHhhh-ccccee
Confidence                459999999999999988 887653

>KOG0026|consensus

Probab=98.05  E-value=2e-05  Score=65.14  Aligned_cols=88  Identities=24%  Similarity=0.353  Sum_probs=55.5

Q ss_pred             CCCccchHHHHHHHH-HHcCCeEEEEEcCCCh-hHHHHhcCCCCEEEE-cCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875         39 PNYTSYIAASYVKNI-EAAGARVVPILIGQDR-EYYAEILTQINGVVI-PGGGTGFDHPNGYADAGRQILHLVDKINEEG  115 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l-~~aG~~~~~i~~~~~~-~~~~~~l~~~dGlil-pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g  115 (308)
                      +++++|. ....+.| -+.|+.+.+.+.++-. ++++  ..+.+++++ ||.+...+.     ..   -.+.++++-   
T Consensus        25 DNYDSFT-~Nv~qYL~~e~g~~~~VyRNDeiTV~El~--~~NP~~LliSPGPG~P~Ds-----GI---s~~~i~~f~---   90 (223)
T KOG0026|consen   25 DNYDSFT-YNLCQYLMGELGCHFEVYRNDELTVEELK--RKNPRGLLISPGPGTPQDS-----GI---SLQTVLELG---   90 (223)
T ss_pred             ecccchh-HHHHHHhhhccCccEEEEecCcccHHHHh--hcCCCeEEecCCCCCCccc-----cc---hHHHHHHhC---
Confidence            4556664 3555666 5678888887754321 2232  237889988 666543211     11   122233332   


Q ss_pred             CCccEEEechhhhHHHHHhcCCcccc
Q psy12875        116 VTFPVLGVCLGFELILQVSNNDTDFR  141 (308)
Q Consensus       116 ~~~PvlGIC~G~Qll~~~~~gg~~~~  141 (308)
                      ..+|+||||.|.|.|..+ +||++..
T Consensus        91 ~~iP~fGvCMGlQCi~e~-fGGkv~~  115 (223)
T KOG0026|consen   91 PLVPLFGVCMGLQCIGEA-FGGKIVR  115 (223)
T ss_pred             CCCceeeeehhhhhhhhh-hCcEEec
Confidence            469999999999999999 9998753

>PRK07567 glutamine amidotransferase; Provisional

Probab=98.02  E-value=5.2e-06  Score=74.47  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=24.3

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      ..++|+||||+|||+|+.++||+|.+
T Consensus        91 ~~~~PvLGIC~G~Qlla~a~GG~V~~  116 (242)
T PRK07567         91 ARDFPFLGACYGVGTLGHHQGGVVDR  116 (242)
T ss_pred             hcCCCEEEEchhHHHHHHHcCCEEec
Confidence            56899999999999999999999976

>PRK13566 anthranilate synthase; Provisional

Probab=97.99  E-value=5.5e-06  Score=84.80  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             CCccEEEechhhhH---HHHH--hcCCccc--ccccccc----ccccceeeecCCCCcch---hhhHhhh-cCCCCeeee
Q psy12875        116 VTFPVLGVCLGFEL---ILQV--SNNDTDF--RKSCKVQ----QVNLNLKFLPGAKRSSL---FSQINEE-GVTFPVLGV  180 (308)
Q Consensus       116 ~~~PvlGIC~G~Ql---l~~~--~~gg~~~--~~~~~~~----~~~~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGi  180 (308)
                      .++-|+-|.+|.+.   +...  ..|....  +...+.+    .....+.++|||+.|..   ...++.. ..++|+|||
T Consensus       525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPILGI  604 (720)
T PRK13566        525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFDCKATIDAALARNLPIFGV  604 (720)
T ss_pred             CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcEEEE
Confidence            45679999999543   3322  1232221  1110000    11235889999998763   3455543 568999999


Q ss_pred             ehhHHHHHHHhCCccccc
Q psy12875        181 CLGFELILQVSNNDTDFR  198 (308)
Q Consensus       181 ClG~Qll~~~~G~~v~~~  198 (308)
                      |+|||+|+.++||++.+.
T Consensus       605 ClG~QlLa~alGG~V~~~  622 (720)
T PRK13566        605 CLGLQAIVEAFGGELGQL  622 (720)
T ss_pred             ehhHHHHHHHcCCEEEEC
Confidence            999999999999999775

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.97  E-value=3.1e-05  Score=58.41  Aligned_cols=80  Identities=26%  Similarity=0.412  Sum_probs=55.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      ..+.+.++.++..+.+++.............++|++++|||......    ........++++++.++  ++|++|+|.|
T Consensus        15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~----~~~~~~~~~~i~~~~~~--~~~i~~~c~g   88 (115)
T cd01653          15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDD----LARDEALLALLREAAAA--GKPILGICLG   88 (115)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhh----hccCHHHHHHHHHHHHc--CCEEEEECch
Confidence            46678999999999988866542111123568999999998732211    11124667777777774  4899999999


Q ss_pred             hhHHHH
Q psy12875        127 FELILQ  132 (308)
Q Consensus       127 ~Qll~~  132 (308)
                      +|++..
T Consensus        89 ~~~l~~   94 (115)
T cd01653          89 AQLLVL   94 (115)
T ss_pred             hHhHee
Confidence            999943

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>KOG3179|consensus

Probab=97.91  E-value=6.5e-06  Score=70.22  Aligned_cols=29  Identities=21%  Similarity=0.413  Sum_probs=25.8

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDFRKS  200 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~~~~  200 (308)
                      .-++||+|||+|||+||++.|++|.+.+.
T Consensus        91 ~mkkkvlGICFGHQiiara~Gg~Vgra~K  119 (245)
T KOG3179|consen   91 FMKKKVLGICFGHQIIARAKGGKVGRAPK  119 (245)
T ss_pred             hhccceEEEeccHHHHHHhhCCccccCCC
Confidence            34799999999999999999999988743

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.89  E-value=3.3e-05  Score=74.70  Aligned_cols=78  Identities=26%  Similarity=0.364  Sum_probs=55.2

Q ss_pred             cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHH--HHHHHHHHHHcCCCccE
Q psy12875         43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQ--ILHLVDKINEEGVTFPV  120 (308)
Q Consensus        43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~--~~e~~~~~~~~g~~~Pv  120 (308)
                      +|..+.-.+.|+++ ++++.+..-.+.     .+.++|+|++|||-.-     .+.+..+.  ..+.++++.++|  .||
T Consensus       245 ~FyY~enl~~L~~~-aelv~fSPl~~~-----~lp~~D~l~lpGG~~e-----~~~~~L~~n~~~~~i~~~~~~G--~pi  311 (433)
T PRK13896        245 CFRYPATIERLRER-ADVVTFSPVAGD-----PLPDCDGVYLPGGYPE-----LHADALADSPALDELADRAADG--LPV  311 (433)
T ss_pred             ceeCHHHHHHHHhc-CcEEEEcCCCCC-----CCCCCCEEEeCCCchh-----hHHHHHHhCCcHHHHHHHHHCC--CcE
Confidence            34445667899998 888877654332     2457999999999621     23333222  347778888855  999


Q ss_pred             EEechhhhHHHHH
Q psy12875        121 LGVCLGFELILQV  133 (308)
Q Consensus       121 lGIC~G~Qll~~~  133 (308)
                      +|+|-|+|+|...
T Consensus       312 ~aeCGG~q~L~~~  324 (433)
T PRK13896        312 LGECGGLMALAES  324 (433)
T ss_pred             EEEehHHHHhhcc
Confidence            9999999999987

>PLN02347 GMP synthetase

Probab=97.88  E-value=1.6e-05  Score=79.01  Aligned_cols=48  Identities=21%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             cceeeecCCCCcch------hhhHhh-h-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL------FSQINE-E-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~------~~~i~~-~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||..+..      ...+.+ . ..++|+||||||||+|+.++||+|.+.
T Consensus        55 dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~  110 (536)
T PLN02347         55 RVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPG  110 (536)
T ss_pred             CEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEec
Confidence            35788888865431      112222 1 358999999999999999999999764

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=97.88  E-value=5e-05  Score=66.93  Aligned_cols=84  Identities=17%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             HHHHHHHcCCeEEEEEcCCC-------------h-----------------hHHHH-hcCCCCEEEEcCCCCCCCC-C--
Q psy12875         49 YVKNIEAAGARVVPILIGQD-------------R-----------------EYYAE-ILTQINGVVIPGGGTGFDH-P--   94 (308)
Q Consensus        49 ~~~~l~~aG~~~~~i~~~~~-------------~-----------------~~~~~-~l~~~dGlilpGG~~~~~~-~--   94 (308)
                      ....|+++|.++..+.....             .                 ..+++ ..+++|+|++|||...... .  
T Consensus        25 P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~  104 (217)
T PRK11780         25 TLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNF  104 (217)
T ss_pred             HHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhh
Confidence            46888999999887754220             0                 11222 3557999999999522110 0  


Q ss_pred             ---CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhc
Q psy12875         95 ---NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN  135 (308)
Q Consensus        95 ---~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~  135 (308)
                         .++.+..+.+.++++++.+++  +||.+||.|.++|+.+ .
T Consensus       105 ~~~~~~lr~~~~v~~lv~~f~~~g--K~vaAIChgp~iL~~~-~  145 (217)
T PRK11780        105 AVKGAECTVNPDVKALVRAFHQAG--KPIGFICIAPAMLPKI-L  145 (217)
T ss_pred             cccchhcccCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHH-h
Confidence               012233446888899999865  9999999999999887 5

>TIGR01001 metA homoserine O-succinyltransferase

Probab=97.84  E-value=0.00012  Score=66.63  Aligned_cols=142  Identities=17%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             cCCCCEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccce
Q psy12875         76 LTQINGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNL  153 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l  153 (308)
                      -+.+||+|+||-+...-+-  -+|=+....++++.+.     +-...|.||.|.|.-.....|=...             
T Consensus        97 ~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~-----~v~Stl~iCWaAqAaLy~~yGI~K~-------------  158 (300)
T TIGR01001        97 DRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKH-----NVTSTMFICWAAQAGLKYFYGIPKY-------------  158 (300)
T ss_pred             cCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHH-----cCcchHHHHHHHHHHHHHHcCCCcc-------------
Confidence            3579999999987422110  0233334466666654     4478999999999866552442211             


Q ss_pred             eeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhh
Q psy12875        154 KFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKF  233 (308)
Q Consensus       154 ~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  233 (308)
                                        ....+++||=            .             +..     ...++|++|+++.+.+  
T Consensus       159 ------------------~l~~KlfGVf------------~-------------h~~-----~~~~pL~rGfdd~f~~--  188 (300)
T TIGR01001       159 ------------------TLPEKLSGVY------------K-------------HDI-----APDSLLLRGFDDFFLA--  188 (300)
T ss_pred             ------------------ccCCceEEee------------c-------------Ccc-----CCCCccccCCCCcccc--
Confidence                              1123445542            1             000     1367899999876643  


Q ss_pred             ccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        234 YQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       234 ~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                           -.+.|. .++...+.   ..++++|+|.|++.+   +..+..++...+=++.|||....
T Consensus       189 -----PhSR~t-~i~~~~i~---~~~~L~vla~s~e~G---~~l~~s~d~r~vfi~GH~EYd~~  240 (300)
T TIGR01001       189 -----PHSRYA-DFDAEDID---KVTDLEILAESDEAG---VYLAANKDERNIFVTGHPEYDAY  240 (300)
T ss_pred             -----CCCCCC-CCCHHHHh---cCCCCeEEecCCCcc---eEEEEcCCCCEEEEcCCCccChh
Confidence                 122333 24433321   346899999998777   55666666555559999999854

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.84  E-value=1.2e-05  Score=67.31  Aligned_cols=52  Identities=21%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             hcCCCCEEEEcCCCCCCCCCCchhH-H--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         75 ILTQINGVVIPGGGTGFDHPNGYAD-A--GRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        75 ~l~~~dGlilpGG~~~~~~~~~~~~-~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+.++|+|+||||-.-     .+.. +  .+.+.+.++++.++|  .||+|+|-|||+|...
T Consensus         4 ~~~~~D~i~lpGg~pe-----~~~~~l~~~~~~~~~I~~~~~~G--~pi~aeCGG~~~Lg~~   58 (158)
T PF07685_consen    4 LPPDADGIYLPGGYPE-----LFALELSRNRGLKEAIREAAEAG--GPIYAECGGYQYLGES   58 (158)
T ss_pred             CCCCCCEEEECCCcHH-----HHHHHHHHHhCHHHHHHHHHHcC--CcEEEEchHHHHHHHH
Confidence            5778999999999521     1211 1  124567788888855  9999999999999988

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.83  E-value=1.4e-05  Score=68.26  Aligned_cols=27  Identities=30%  Similarity=0.645  Sum_probs=24.3

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++|+||||+|||+|+.++||++.+.
T Consensus        68 ~~~~PilGIC~G~Qll~~~~gg~v~~~   94 (181)
T cd01742          68 ELGVPVLGICYGMQLIAKALGGKVERG   94 (181)
T ss_pred             hcCCCEEEEcHHHHHHHHhcCCeEEeC
Confidence            358999999999999999999998764

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>KOG0370|consensus

Probab=97.83  E-value=1.8e-05  Score=80.54  Aligned_cols=82  Identities=18%  Similarity=0.285  Sum_probs=53.9

Q ss_pred             CccEEEechhh---hHHHHHhcCCcc--ccccccccc-cccceeeecCCCCcchhh----hHhhh-cCCCCeeeeehhHH
Q psy12875        117 TFPVLGVCLGF---ELILQVSNNDTD--FRKSCKVQQ-VNLNLKFLPGAKRSSLFS----QINEE-GVTFPVLGVCLGFE  185 (308)
Q Consensus       117 ~~PvlGIC~G~---Qll~~~~~gg~~--~~~~~~~~~-~~~~l~~~pg~~~~~~~~----~i~~~-~~~~PilGiClG~Q  185 (308)
                      ..-|+.+=-|+   |+-.....|..+  +.-..+... ..+++.+++||++|...+    .+++. ..++|++|||+|||
T Consensus       172 ~~~I~aiDcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQ  251 (1435)
T KOG0370|consen  172 SLRILAIDCGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQ  251 (1435)
T ss_pred             ccEEEEcccCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhH
Confidence            45677777777   444444344433  111111111 235799999999998533    33342 33599999999999


Q ss_pred             HHHHHhCCccccc
Q psy12875        186 LILQVSNNDTDFR  198 (308)
Q Consensus       186 ll~~~~G~~v~~~  198 (308)
                      +++.+.|++..+.
T Consensus       252 llA~AaGakT~Km  264 (1435)
T KOG0370|consen  252 LLALAAGAKTYKM  264 (1435)
T ss_pred             HHHHhhCCceEEe
Confidence            9999999998775

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.81  E-value=8.3e-05  Score=53.50  Aligned_cols=77  Identities=27%  Similarity=0.406  Sum_probs=52.4

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      .+.+.+++.+..+.+++.............++|++++|||......    ........+++.++.++  +.|++|+|.|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~----~~~~~~~~~~~~~~~~~--~~~i~~~~~g~   89 (92)
T cd03128          16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDD----LAWDEALLALLREAAAA--GKPVLGICLGA   89 (92)
T ss_pred             cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhh----hccCHHHHHHHHHHHHc--CCEEEEEeccc
Confidence            5578889999988888866543211124668999999999742211    11123566777776664  48999999999


Q ss_pred             hHH
Q psy12875        128 ELI  130 (308)
Q Consensus       128 Qll  130 (308)
                      |++
T Consensus        90 ~~~   92 (92)
T cd03128          90 QLL   92 (92)
T ss_pred             ccC
Confidence            864

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=97.78  E-value=1.7e-05  Score=71.58  Aligned_cols=34  Identities=15%  Similarity=0.411  Sum_probs=28.2

Q ss_pred             hhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        165 FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       165 ~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ...++. ...++|+||||+|||+|+.++||++...
T Consensus        97 ~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~  131 (254)
T PRK11366         97 MALINAALERRIPIFAICRGLQELVVATGGSLHRK  131 (254)
T ss_pred             HHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeec
Confidence            345554 4678999999999999999999999763

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=97.70  E-value=3.2e-05  Score=69.04  Aligned_cols=48  Identities=19%  Similarity=0.246  Sum_probs=35.8

Q ss_pred             ceeeecCCCCcch---hhhHhh-hcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        152 NLKFLPGAKRSSL---FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       152 ~l~~~pg~~~~~~---~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      ++.+.+|++.+..   ...++. ...++|+||||+|||+|+.++|+++.+.+
T Consensus        58 givl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~  109 (235)
T cd01746          58 GILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLP  109 (235)
T ss_pred             EEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCc
Confidence            5677777766553   223333 25689999999999999999999987653

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK07053 glutamine amidotransferase; Provisional

Probab=97.67  E-value=4.7e-05  Score=67.94  Aligned_cols=47  Identities=23%  Similarity=0.322  Sum_probs=33.7

Q ss_pred             ceeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.+..||....          ....+++ ...++|+||||+|||+|+.++||+|.+.
T Consensus        50 ~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~  107 (234)
T PRK07053         50 LLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPG  107 (234)
T ss_pred             EEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecC
Confidence            466666665432          1233443 2568999999999999999999999763

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=97.65  E-value=0.00017  Score=63.27  Aligned_cols=86  Identities=17%  Similarity=0.321  Sum_probs=55.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC----------h--------------------hHHHH-hcCCCCEEEEcCCCCCCCCCCc
Q psy12875         48 SYVKNIEAAGARVVPILIGQD----------R--------------------EYYAE-ILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~----------~--------------------~~~~~-~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      ...+.|+++|.++..+.....          .                    ..+++ .++++|+|++|||......-.+
T Consensus        21 ~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D  100 (213)
T cd03133          21 LTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSD  100 (213)
T ss_pred             HHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhh
Confidence            346888999999888765210          0                    11222 2457999999999521110000


Q ss_pred             hh------HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcC
Q psy12875         97 YA------DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNN  136 (308)
Q Consensus        97 ~~------~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~g  136 (308)
                      |.      +..+.+.++++++.+++  +||.+||.|.++|+.+ .+
T Consensus       101 ~~~~~~~~~~~~~l~~lv~~f~~~g--K~VaAIChgp~~L~~~-~~  143 (213)
T cd03133         101 FAVKGADCTVNPEVERLVREFHQAG--KPIGAICIAPALAAKI-LG  143 (213)
T ss_pred             hcccccccccCHHHHHHHHHHHHCC--CeEEEECHHHHHHHHH-hc
Confidence            11      11246788889999865  9999999999999887 53

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.58  E-value=6.3e-05  Score=65.26  Aligned_cols=40  Identities=38%  Similarity=0.640  Sum_probs=27.9

Q ss_pred             eeeecCCCCcch-hhhHh------hh-cCCCCeeeeehhHHHHHHHhCC
Q psy12875        153 LKFLPGAKRSSL-FSQIN------EE-GVTFPVLGVCLGFELILQVSNN  193 (308)
Q Consensus       153 l~~~pg~~~~~~-~~~i~------~~-~~~~PilGiClG~Qll~~~~G~  193 (308)
                      +. .||++.+.. ...++      .. ..++|+||||+|||+|+.++++
T Consensus        42 iI-lPG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~   89 (196)
T PRK13170         42 LF-LPGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEE   89 (196)
T ss_pred             EE-ECCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhccc
Confidence            44 499988662 11111      11 2479999999999999999853

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=97.49  E-value=0.00061  Score=60.66  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=67.0

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      .+|.|...+.-+..        ..++.|+ .++.+++++.|+++..+....   +..+.+.++|+|+++||...     .
T Consensus        30 ~~~~v~fIPtAs~~--------~~~~~y~-~~~~~af~~lG~~v~~l~~~~---d~~~~l~~ad~I~v~GGnt~-----~   92 (233)
T PRK05282         30 GRRKAVFIPYAGVT--------QSWDDYT-AKVAEALAPLGIEVTGIHRVA---DPVAAIENAEAIFVGGGNTF-----Q   92 (233)
T ss_pred             CCCeEEEECCCCCC--------CCHHHHH-HHHHHHHHHCCCEEEEeccch---hhHHHHhcCCEEEECCccHH-----H
Confidence            35777777664421        1234676 468899999999988776432   23346789999999999631     1


Q ss_pred             hhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         97 YADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        97 ~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.+..+  .+.+.+++++++|  +|++|+|.|.-+++..
T Consensus        93 l~~~l~~~gl~~~l~~~~~~G--~~~~G~SAGAii~~~~  129 (233)
T PRK05282         93 LLKQLYERGLLAPIREAVKNG--TPYIGWSAGANVAGPT  129 (233)
T ss_pred             HHHHHHHCCcHHHHHHHHHCC--CEEEEECHHHHhhhcc
Confidence            222222  4667788888855  9999999999777654

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=97.47  E-value=0.0001  Score=72.49  Aligned_cols=52  Identities=25%  Similarity=0.409  Sum_probs=36.9

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.++|+|++|||.....    .....+  .+.+.++++.++|  .||+|||-|||+|...
T Consensus       282 l~~~d~lilpGg~~~~~----~~~~l~~~~~~~~i~~~~~~G--~pvlgiCgG~q~Lg~~  335 (475)
T TIGR00313       282 LTGCDAVIIPGSKSTIA----DLYALKQSGFAEEILDFAKEG--GIVIGICGGYQMLGKE  335 (475)
T ss_pred             cccCCEEEECCcchHHH----HHHHHHhcChHHHHHHHHHcC--CcEEEEcHHHHHhhhh
Confidence            56899999999962110    111112  3566677777754  9999999999999987

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=97.47  E-value=0.00028  Score=62.82  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .++||+|++|||.....   ++ ...+.+.++++++.+++  +||.+||+|.++|+.+
T Consensus        92 ~~dYDav~iPGG~g~~~---dl-~~~~~l~~ll~~f~~~g--K~iaAIChgp~~L~~a  143 (231)
T cd03147          92 PDDYGIFFVAGGHGTLF---DF-PHATNLQKIAQQIYANG--GVVAAVCHGPAILANL  143 (231)
T ss_pred             HhhCcEEEECCCCchhh---hc-ccCHHHHHHHHHHHHcC--CEEEEEChHHHHHHhh
Confidence            45799999999953211   12 12346788888888855  9999999999988875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.47  E-value=0.00013  Score=65.29  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=37.0

Q ss_pred             cceeeecCCCCcc--------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        151 LNLKFLPGAKRSS--------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       151 ~~l~~~pg~~~~~--------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      ..+.+.+||..+.        ....|++ ...++|+||||+|||+|+.++||+|.+.+
T Consensus        54 dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~  111 (239)
T PRK06490         54 AGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHP  111 (239)
T ss_pred             CEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCC
Confidence            3577888887643        1234443 35689999999999999999999998753

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=97.46  E-value=0.00014  Score=63.84  Aligned_cols=42  Identities=29%  Similarity=0.594  Sum_probs=30.2

Q ss_pred             eeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCc
Q psy12875        153 LKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       153 l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      ..+.||++.+.          +...+++ ...++|+||||+|||+|++.+++.
T Consensus        42 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~   94 (210)
T CHL00188         42 ALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEG   94 (210)
T ss_pred             EEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccC
Confidence            45679988854          1223333 356899999999999999986654

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=97.42  E-value=0.00052  Score=61.14  Aligned_cols=51  Identities=18%  Similarity=0.251  Sum_probs=38.0

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ++||+|++|||.....    .....+.+.++++++++++  +||.+||+|.+.|..+
T Consensus        95 ~dYDav~iPGG~g~~~----dl~~~~~l~~ll~~f~~~g--K~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGALI----GIPESQDVAAALQWAIKND--RFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCChh----hcccCHHHHHHHHHHHHcC--CEEEEECcHHHHHHhc
Confidence            5799999999953221    1222346788889999865  9999999999977755

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PRK04155 chaperone protein HchA; Provisional

Probab=97.40  E-value=0.00061  Score=62.57  Aligned_cols=78  Identities=14%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             HHHHHHcCCeEEEEEcCCCh-----------------------------hHHHHh-------cCCCCEEEEcCCCCCCCC
Q psy12875         50 VKNIEAAGARVVPILIGQDR-----------------------------EYYAEI-------LTQINGVVIPGGGTGFDH   93 (308)
Q Consensus        50 ~~~l~~aG~~~~~i~~~~~~-----------------------------~~~~~~-------l~~~dGlilpGG~~~~~~   93 (308)
                      ...|+++|+++.++......                             ..++..       .++||+|++|||..... 
T Consensus        83 ~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~-  161 (287)
T PRK04155         83 MYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALI-  161 (287)
T ss_pred             HHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCCchHH-
Confidence            58889999999988753211                             001211       46899999999952111 


Q ss_pred             CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         94 PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        94 ~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                         .....+.+.++++.+.+++  +||.+||+|.++|..+
T Consensus       162 ---dL~~~~~l~~ll~~~~~~~--K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        162 ---GLPESEDVAAALQWALDND--RFIITLCHGPAALLAA  196 (287)
T ss_pred             ---HHhhCHHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence               1223346788888888855  9999999999877765

>KOG1907|consensus

Probab=97.39  E-value=0.0028  Score=64.83  Aligned_cols=99  Identities=19%  Similarity=0.238  Sum_probs=60.1

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHH--HhcCCCCEEEEcCCCCCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYA--EILTQINGVVIPGGGTGFDHP   94 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~--~~l~~~dGlilpGG~~~~~~~   94 (308)
                      ++|.++|+-....+          +    +.....++.++|++++.+...+   .+.  ..|+++-||+++||-+..+.-
T Consensus      1057 ~~PkVAilREeGvN----------g----~rEMa~af~~AgF~~~DVtmtD---lL~G~~~ld~frGlaf~GGFSYaDvL 1119 (1320)
T KOG1907|consen 1057 TAPKVAILREEGVN----------G----DREMAAAFYAAGFETVDVTMTD---LLAGRHHLDDFRGLAFCGGFSYADVL 1119 (1320)
T ss_pred             CCCceEEeeccccc----------c----HHHHHHHHHHcCCceeeeeeeh---hhcCceeHhHhcceeeecCcchHhhh
Confidence            48999998765443          1    2344568889999988776532   222  257889999999997532221


Q ss_pred             CchhHHHH------HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         95 NGYADAGR------QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        95 ~~~~~~~~------~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..-..|..      .+..-..++.+. .+.--||||.|+|+|+..
T Consensus      1120 gSakGWAasil~ne~v~~QF~~F~~R-~DtFslGiCNGCQlms~L 1163 (1320)
T KOG1907|consen 1120 GSAKGWAASILFNESVRSQFEAFFNR-QDTFSLGICNGCQLMSRL 1163 (1320)
T ss_pred             ccccchhhheeeChhHHHHHHHHhcC-CCceeeecccHhHHHHHh
Confidence            00001111      222222222222 346789999999999976

>PRK00074 guaA GMP synthase; Reviewed

Probab=97.36  E-value=0.00014  Score=72.16  Aligned_cols=27  Identities=26%  Similarity=0.608  Sum_probs=24.5

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++|+||||+|||+|+.++||+|.+.
T Consensus        73 ~~~~PvLGIC~G~QlLa~~lGG~V~~~   99 (511)
T PRK00074         73 ELGVPVLGICYGMQLMAHQLGGKVERA   99 (511)
T ss_pred             hCCCCEEEECHHHHHHHHHhCCeEEec
Confidence            468999999999999999999998764

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.34  E-value=0.00017  Score=62.83  Aligned_cols=38  Identities=32%  Similarity=0.598  Sum_probs=27.9

Q ss_pred             ceeeecCCCCcch----------hhhHhh--hcCCCCeeeeehhHHHHHHH
Q psy12875        152 NLKFLPGAKRSSL----------FSQINE--EGVTFPVLGVCLGFELILQV  190 (308)
Q Consensus       152 ~l~~~pg~~~~~~----------~~~i~~--~~~~~PilGiClG~Qll~~~  190 (308)
                      .+.+ ||++.+..          ...+++  ...++|+||||+|||+|+.+
T Consensus        40 ~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         40 KLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             EEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            3555 99998642          233333  25689999999999999997

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=97.30  E-value=0.00023  Score=62.84  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        164 LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       164 ~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      .+..|+. .++++||||||-|+|+|..+|||++..
T Consensus        96 E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q  130 (243)
T COG2071          96 ELALIRAALERGIPILGICRGLQLLNVALGGTLYQ  130 (243)
T ss_pred             HHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh
Confidence            4667775 578999999999999999999999765

>TIGR00337 PyrG CTP synthase

Probab=97.29  E-value=0.00024  Score=69.85  Aligned_cols=49  Identities=20%  Similarity=0.256  Sum_probs=38.8

Q ss_pred             cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      .++.+.+|++.+..   +..++.. ..++|+||||+|||+++.++|+++...+
T Consensus       345 dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~  397 (525)
T TIGR00337       345 DGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLK  397 (525)
T ss_pred             CEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCC
Confidence            56888899987553   3345544 4789999999999999999999887754

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>KOG1622|consensus

Probab=97.27  E-value=0.00022  Score=67.65  Aligned_cols=46  Identities=22%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             cceeeecCCCCcc------hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSS------LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~------~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+++++.||....      ..+.+  +...+|+||||||||+|+..+|+.|.+.
T Consensus        61 rgiIiSGGP~SVya~dAP~~dp~i--f~~~vpvLGICYGmQ~i~~~~Gg~V~~~  112 (552)
T KOG1622|consen   61 RGIIISGGPNSVYAEDAPSFDPAI--FELGVPVLGICYGMQLINKLNGGTVVKG  112 (552)
T ss_pred             eEEEEeCCCCccccCcCCCCChhH--hccCCcceeehhHHHHHHHHhCCccccc
Confidence            4577777776532      11122  2347999999999999999999999774

>PRK00758 GMP synthase subunit A; Validated

Probab=97.27  E-value=0.00023  Score=61.02  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             ceeeecCCCCcc---hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSS---LFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~---~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.+.+||..+.   ....++  ..++|+||||+|||+|+.++||+|.+.
T Consensus        44 givi~Gg~~~~~~~~~~~~l~--~~~~PilGIC~G~Q~L~~a~Gg~v~~~   91 (184)
T PRK00758         44 GLILSGGPDIERAGNCPEYLK--ELDVPILGICLGHQLIAKAFGGEVGRG   91 (184)
T ss_pred             EEEECCCCChhhccccHHHHH--hCCCCEEEEeHHHHHHHHhcCcEEecC
Confidence            477777773211   111222  357999999999999999999998764

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.24  E-value=0.00028  Score=60.91  Aligned_cols=38  Identities=24%  Similarity=0.489  Sum_probs=28.0

Q ss_pred             eeeecCCCCcc-h---------hhhHhhhcCCCCeeeeehhHHHHHHHh
Q psy12875        153 LKFLPGAKRSS-L---------FSQINEEGVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       153 l~~~pg~~~~~-~---------~~~i~~~~~~~PilGiClG~Qll~~~~  191 (308)
                      ..+.||++.+. .         .+.|++ ..++|+||||+|||+|+...
T Consensus        40 ~lIlPG~g~~~~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~~~   87 (192)
T PRK13142         40 TIILPGVGHFKDAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYEHS   87 (192)
T ss_pred             EEEECCCCCHHHHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhhhc
Confidence            34789998744 1         223333 45799999999999999976

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.23  E-value=0.00037  Score=60.08  Aligned_cols=29  Identities=21%  Similarity=0.462  Sum_probs=23.6

Q ss_pred             hhHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875        166 SQINEE-GVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       166 ~~i~~~-~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      ..++.. ..++|+||||+|||+|+.++||+
T Consensus        91 ~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~  120 (189)
T cd01745          91 ALLRAALERGKPILGICRGMQLLNVALGGT  120 (189)
T ss_pred             HHHHHHHHCCCCEEEEcchHHHHHHHhCCe
Confidence            344443 56899999999999999999876

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.21  E-value=0.00042  Score=60.81  Aligned_cols=40  Identities=30%  Similarity=0.644  Sum_probs=29.4

Q ss_pred             eeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhC
Q psy12875        153 LKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSN  192 (308)
Q Consensus       153 l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G  192 (308)
                      ..+.||++.+.          +...+++ ...++|+||||+|||+|+.+++
T Consensus        40 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~   90 (210)
T PRK14004         40 ALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE   90 (210)
T ss_pred             EEEECCCCchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence            55689998643          1223333 3578999999999999999876

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.21  E-value=0.00029  Score=55.62  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=31.4

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELI  130 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll  130 (308)
                      .++|.||+|||. . .+  .+......-.+.++++.+++  .|+||||+|.=+-
T Consensus        43 ~~ad~lVlPGGa-~-~~--~~~~L~~~g~~~i~~~v~~g--~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGA-D-LP--YCRALNGKGNRRIRNFVRNG--GNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCC-h-HH--HHHHHHhhCcHHHHHHHHCC--CcEEEEecCccce
Confidence            479999999964 2 11  12222222266678877744  9999999997554

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.00027  Score=62.37  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=21.9

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +.++|+||||.|||+|..++||++..
T Consensus       104 ~~~~PilGICrG~Q~lnv~~GGtl~q  129 (217)
T PF07722_consen  104 GRGKPILGICRGMQLLNVAFGGTLYQ  129 (217)
T ss_dssp             CTT--EEEETHHHHHHHHHCCSSEES
T ss_pred             hcCCCEEEEcHHHHHHHHHhCCCcee
Confidence            67999999999999999999999755

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>PRK05380 pyrG CTP synthetase; Validated

Probab=97.12  E-value=0.0005  Score=67.63  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             cceeeecCCCCcc---hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        151 LNLKFLPGAKRSS---LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       151 ~~l~~~pg~~~~~---~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      .++.+.+|++.+.   ....++.. ..++|+||||+|||+|+.++|+++.
T Consensus       345 DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~  394 (533)
T PRK05380        345 DGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVL  394 (533)
T ss_pred             CEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence            4678888877654   24444443 5689999999999999999999984

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=97.05  E-value=0.002  Score=53.83  Aligned_cols=79  Identities=24%  Similarity=0.407  Sum_probs=51.8

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC------------hhHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         48 SYVKNIEAAGARVVPILIGQD------------REYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~------------~~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      ...+.++++|.++..+.....            +..++. ...++|+|++|||..   +  ........+.++++++.++
T Consensus        17 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~---~--~~~~~~~~l~~~l~~~~~~   91 (166)
T TIGR01382        17 YPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA---P--EYLRLNNKAVRLVREFVEK   91 (166)
T ss_pred             HHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCC---H--HHhccCHHHHHHHHHHHHc
Confidence            446778888888776643211            001222 123689999999852   1  1111224678888888885


Q ss_pred             CCCccEEEechhhhHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~  133 (308)
                      +  +|+.+||.|.++|+.+
T Consensus        92 ~--~~i~~ic~G~~~La~a  108 (166)
T TIGR01382        92 G--KPVAAICHGPQLLISA  108 (166)
T ss_pred             C--CEEEEEChHHHHHHhc
Confidence            4  9999999999999976

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=97.04  E-value=0.0054  Score=53.63  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=67.9

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC--ChhHHHHhcCCCCEEEEcCCCCCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ--DREYYAEILTQINGVVIPGGGTGFDHP   94 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~--~~~~~~~~l~~~dGlilpGG~~~~~~~   94 (308)
                      ..|.|.+.+.-+..          ...|. ..|.+++++.|+++..++...  +..+..+.+.++|+|+++||..  .  
T Consensus        28 ~~~~i~~iptA~~~----------~~~~~-~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~--~--   92 (210)
T cd03129          28 AGARVLFIPTASGD----------RDEYG-EEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ--L--   92 (210)
T ss_pred             CCCeEEEEeCCCCC----------hHHHH-HHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH--H--
Confidence            36888888765432          12343 478899999999988777543  2345556789999999999952  1  


Q ss_pred             CchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         95 NGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        95 ~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                       .+.+..+  ...+.+++.+++|  .|+.|+|.|..++...
T Consensus        93 -~~~~~l~~t~~~~~i~~~~~~G--~v~~G~SAGA~~~~~~  130 (210)
T cd03129          93 -RLLSVLRETPLLDAILKRVARG--VVIGGTSAGAAVMGET  130 (210)
T ss_pred             -HHHHHHHhCChHHHHHHHHHcC--CeEEEcCHHHHHhhhc
Confidence             1223222  2566666666644  9999999999998864

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=96.95  E-value=0.00046  Score=59.98  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=33.5

Q ss_pred             cceeeecCCCCcc--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSS--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++++-||....        ..+.|.+. ...+|+||||||||+|+.++||+|.+.
T Consensus        47 ~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~  103 (198)
T COG0518          47 DGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERG  103 (198)
T ss_pred             CEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEecc
Confidence            4577777774322        12233333 335679999999999999999999774

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=96.92  E-value=0.0037  Score=52.17  Aligned_cols=79  Identities=24%  Similarity=0.311  Sum_probs=52.9

Q ss_pred             HHHHHHHHcCCeEEEEEcC-CCh-----h--------HHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAGARVVPILIG-QDR-----E--------YYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN  112 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~-~~~-----~--------~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~  112 (308)
                      ...+.|+++|.++..+... ...     .        .++. ....+|+|++|||. ...    .....+.+.++++++.
T Consensus        17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~----~~~~~~~~~~~l~~~~   91 (165)
T cd03134          17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPD----KLRRDPDAVAFVRAFA   91 (165)
T ss_pred             HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCC-Chh----hhccCHHHHHHHHHHH
Confidence            3456788889888877544 210     0        1222 12368999999996 211    1112246788888888


Q ss_pred             HcCCCccEEEechhhhHHHHH
Q psy12875        113 EEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       113 ~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +++  +||.+||.|.++|+.+
T Consensus        92 ~~~--~~i~~ic~G~~~La~a  110 (165)
T cd03134          92 EAG--KPVAAICHGPWVLISA  110 (165)
T ss_pred             HcC--CeEEEEchHHHHHHhc
Confidence            854  9999999999999876

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=96.87  E-value=0.0012  Score=56.63  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=53.8

Q ss_pred             HHHHHHHcCCeEEEEEcCCC--------------hhHHHHh--cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875         49 YVKNIEAAGARVVPILIGQD--------------REYYAEI--LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN  112 (308)
Q Consensus        49 ~~~~l~~aG~~~~~i~~~~~--------------~~~~~~~--l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~  112 (308)
                      -.+.|+++|..+..+.....              ....-..  .+++|+|++|||..  .+  .+......+.++++++.
T Consensus        21 p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~--~~--~~~~~~~~~~~~v~~~~   96 (188)
T COG0693          21 PYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDH--GP--EYLRPDPDLLAFVRDFY   96 (188)
T ss_pred             HHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCcc--ch--hhccCcHHHHHHHHHHH
Confidence            36788999987776654431              0001111  24899999999931  12  12222257889999999


Q ss_pred             HcCCCccEEEechhhhHHHHH
Q psy12875        113 EEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       113 ~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +++  +||.+||.|-++|+.+
T Consensus        97 ~~~--k~vaaIC~g~~~L~~a  115 (188)
T COG0693          97 ANG--KPVAAICHGPAVLAAA  115 (188)
T ss_pred             HcC--CEEEEEChhHHHHhcc
Confidence            955  9999999999999976

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=96.85  E-value=0.0012  Score=57.33  Aligned_cols=40  Identities=35%  Similarity=0.616  Sum_probs=28.5

Q ss_pred             eeeecCCCCcc----------hhhhHhh-hcCCCCeeeeehhHHHHHHHhC
Q psy12875        153 LKFLPGAKRSS----------LFSQINE-EGVTFPVLGVCLGFELILQVSN  192 (308)
Q Consensus       153 l~~~pg~~~~~----------~~~~i~~-~~~~~PilGiClG~Qll~~~~G  192 (308)
                      ..+.||++.+.          ....+++ ...++|+||||+|||+|+.+..
T Consensus        40 ~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~   90 (199)
T PRK13181         40 KVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSE   90 (199)
T ss_pred             EEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcc
Confidence            44568987642          1233443 2568999999999999999865

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=96.81  E-value=0.00094  Score=58.03  Aligned_cols=29  Identities=31%  Similarity=0.678  Sum_probs=23.5

Q ss_pred             hhHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875        166 SQINEE-GVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       166 ~~i~~~-~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      +.+++. ..++|+||||+|||+|+.++|+.
T Consensus        68 ~~i~~~~~~~~pilGIC~G~Qll~~~~gg~   97 (200)
T PRK13527         68 DEIKEKIEEGLPILGTCAGLILLAKEVGDD   97 (200)
T ss_pred             HHHHHHHHCCCeEEEECHHHHHHHhhhcCC
Confidence            344443 46899999999999999999984

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=96.80  E-value=0.014  Score=50.34  Aligned_cols=98  Identities=15%  Similarity=0.210  Sum_probs=59.6

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC---------------hhHHHH-hcCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD---------------REYYAE-ILTQIN   80 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~---------------~~~~~~-~l~~~d   80 (308)
                      |+|.|.|+..+.-.          ...++  ..++.|+++|.++.......+               +..+++ ..+++|
T Consensus         1 ~~~~~~il~~~g~~----------~~e~~--~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D   68 (196)
T PRK11574          1 MSASALVCLAPGSE----------ETEAV--TTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFD   68 (196)
T ss_pred             CCceEEEEeCCCcc----------hhhHh--HHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCC
Confidence            46778888765432          11222  446788888877665543210               012222 124699


Q ss_pred             EEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHH
Q psy12875         81 GVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQ  132 (308)
Q Consensus        81 GlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~  132 (308)
                      .|++|||.....    .....+.+.++++++.+++  ++|.+||.|..+|..
T Consensus        69 ~l~ipGG~~~~~----~~~~~~~l~~~L~~~~~~g--~~v~aic~G~~~ll~  114 (196)
T PRK11574         69 VIVLPGGIKGAE----CFRDSPLLVETVRQFHRSG--RIVAAICAAPATVLV  114 (196)
T ss_pred             EEEECCCCchhh----hhhhCHHHHHHHHHHHHCC--CEEEEECHhHHHHHH
Confidence            999999842111    1112235888898888855  999999999986543

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=96.79  E-value=0.0013  Score=54.08  Aligned_cols=52  Identities=21%  Similarity=0.532  Sum_probs=37.0

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+.+|+|++|||....    .+.+. .+.+.++++++.+++  +||.+||.|..+|+.+
T Consensus        35 ~~~yDalilpGG~~~~----~~l~~~~~~l~~~~~~~~~~~--k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   35 PSDYDALILPGGHGGA----DDLRTDSKDLLELLKEFYEAG--KPIAAICHGPAVLAAA   87 (147)
T ss_dssp             GGGESEEEEE-BTHHH----HHHTTCHHHHHHHHHHHHHTT---EEEEETTCHHHHHHT
T ss_pred             hhhCCEEEECCCCchh----hhHhhHHHHHHHHHHHHHHcC--CeEEecCCCcchhhcc
Confidence            4579999999995211    12221 257888999999854  9999999999888866

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=96.78  E-value=0.0019  Score=54.90  Aligned_cols=49  Identities=27%  Similarity=0.552  Sum_probs=36.9

Q ss_pred             CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         78 QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        78 ~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+|+|++|||.. .    .+......+.++++++.+++  +||.|||.|.++|+.+
T Consensus        76 ~~D~liv~GG~~-~----~~~~~~~~~~~~l~~~~~~~--k~i~~ic~G~~~La~a  124 (180)
T cd03169          76 DYDALVIPGGRA-P----EYLRLDEKVLAIVRHFAEAN--KPVAAICHGPQILAAA  124 (180)
T ss_pred             HCCEEEEcCCCC-h----hhhccCHHHHHHHHHHHHcC--CEEEEECcHHHHHHHc
Confidence            689999999952 1    11111246778888888854  9999999999999976

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PLN02327 CTP synthase

Probab=96.74  E-value=0.0011  Score=65.34  Aligned_cols=48  Identities=15%  Similarity=0.164  Sum_probs=34.6

Q ss_pred             cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+.+|++.+..   ...++.. ..++|+||||+|||++..++++++--.
T Consensus       364 DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~  415 (557)
T PLN02327        364 DGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGL  415 (557)
T ss_pred             CEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCC
Confidence            35677777766542   3334433 468999999999999999999887553

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=96.69  E-value=0.0042  Score=54.87  Aligned_cols=53  Identities=25%  Similarity=0.403  Sum_probs=39.1

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHh
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVS  134 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~  134 (308)
                      ++++|+|++|||......    ....+.+.++++++.+++  ++|.+||.|-.+|+.+.
T Consensus        88 ~~~~dal~ipGG~~~~~~----l~~~~~l~~~l~~~~~~~--k~iaaIC~g~~~La~ag  140 (221)
T cd03141          88 PSDYDAIFIPGGHGPMFD----LPDNPDLQDLLREFYENG--KVVAAVCHGPAALLNVK  140 (221)
T ss_pred             HhHceEEEECCCcccccc----cccCHHHHHHHHHHHHcC--CEEEEEcchHHHHHhcc
Confidence            347899999998521111    112346888898888854  89999999999999773

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=96.66  E-value=0.0014  Score=56.49  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=23.3

Q ss_pred             hHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875        167 QINEE-GVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      .+++. ..++|++|||+|+|+|+.++|+.
T Consensus        64 ~i~~~~~~g~PilGIC~G~QlL~~~~gg~   92 (189)
T PRK13525         64 PLREFIASGLPVFGTCAGMILLAKEIEGY   92 (189)
T ss_pred             HHHHHHHCCCeEEEECHHHHHHHhhcccC
Confidence            44443 56899999999999999999986

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=96.65  E-value=0.0013  Score=60.12  Aligned_cols=24  Identities=46%  Similarity=0.920  Sum_probs=21.3

Q ss_pred             CCCeeeeehhHHHHHHHhCCcccc
Q psy12875        174 TFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       174 ~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      .+|++|+|+|+|+|+.++|+++..
T Consensus        92 ~~Pv~GiClG~QlL~~~~gg~~~~  115 (273)
T cd01747          92 YFPVWGTCLGFELLTYLTSGETLL  115 (273)
T ss_pred             CCcEEEEcHHHHHHHHHhCCCccc
Confidence            489999999999999999987543

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK08250 glutamine amidotransferase; Provisional

Probab=96.64  E-value=0.0019  Score=57.63  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=27.1

Q ss_pred             hHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        167 QINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .|++. ..++|+||||+|||+|+.++||+|.+.
T Consensus        76 ~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~  108 (235)
T PRK08250         76 LINQAIKAGKAVIGVCLGAQLIGEALGAKYEHS  108 (235)
T ss_pred             HHHHHHHcCCCEEEEChhHHHHHHHhCceeccC
Confidence            34443 568999999999999999999999775

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=96.58  E-value=0.0058  Score=49.80  Aligned_cols=80  Identities=25%  Similarity=0.309  Sum_probs=53.6

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         48 SYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      ...+.++.+|.++..+......            ..++. ....+|+|++|||.....    .....+.+.++++++.++
T Consensus        19 ~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~----~~~~~~~l~~~l~~~~~~   94 (142)
T cd03132          19 ALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF----ALAPSGRALHFVTEAFKH   94 (142)
T ss_pred             HHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH----HHccChHHHHHHHHHHhc
Confidence            5578888999998877643221            01111 122589999999852110    112234688888888885


Q ss_pred             CCCccEEEechhhhHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~  133 (308)
                      +  +||.+||.|-.+|+.+
T Consensus        95 ~--~~I~aic~G~~~La~a  111 (142)
T cd03132          95 G--KPIGAVGEGSDLLEAA  111 (142)
T ss_pred             C--CeEEEcCchHHHHHHc
Confidence            4  9999999999999976

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=96.56  E-value=0.0018  Score=55.45  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=23.6

Q ss_pred             hhHhhh-cCCCCeeeeehhHHHHHHHhCCc
Q psy12875        166 SQINEE-GVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       166 ~~i~~~-~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      ..+++. ...+|++|||+|||+|+.++++.
T Consensus        60 ~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~   89 (183)
T cd01749          60 DPLREFIRAGKPVFGTCAGLILLAKEVEDQ   89 (183)
T ss_pred             HHHHHHHHcCCeEEEECHHHHHHHHHhccc
Confidence            344543 56899999999999999999876

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=96.46  E-value=0.0097  Score=57.01  Aligned_cols=79  Identities=18%  Similarity=0.286  Sum_probs=57.1

Q ss_pred             chHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH---HHHHHHHHHHHHcCCCccE
Q psy12875         44 YIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG---RQILHLVDKINEEGVTFPV  120 (308)
Q Consensus        44 ~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~---~~~~e~~~~~~~~g~~~Pv  120 (308)
                      |-.+...+.|+++|+++++...-.+.+    ...++|+|+|+||-    |+ .|.+..   +...+.++++.++|  +||
T Consensus       258 FyY~~nl~~Lr~~GAelv~FSPL~D~~----lP~~~D~vYlgGGY----PE-lfA~~L~~n~~~~~~i~~~~~~G--~pi  326 (451)
T COG1797         258 FYYPENLELLREAGAELVFFSPLADEE----LPPDVDAVYLGGGY----PE-LFAEELSANESMRRAIKAFAAAG--KPI  326 (451)
T ss_pred             cccHHHHHHHHHCCCEEEEeCCcCCCC----CCCCCCEEEeCCCC----hH-HHHHHHhhCHHHHHHHHHHHHcC--Cce
Confidence            334566899999999999887655543    33369999999993    32 232221   24566778888855  999


Q ss_pred             EEechhhhHHHHH
Q psy12875        121 LGVCLGFELILQV  133 (308)
Q Consensus       121 lGIC~G~Qll~~~  133 (308)
                      +|=|-|+--|...
T Consensus       327 yaECGGlMYL~~~  339 (451)
T COG1797         327 YAECGGLMYLGES  339 (451)
T ss_pred             EEecccceeehhh
Confidence            9999999888876

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.44  E-value=0.0095  Score=50.74  Aligned_cols=52  Identities=23%  Similarity=0.385  Sum_probs=39.1

Q ss_pred             hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         75 ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        75 ~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ...++|.|++|||... .    .....+.+.++++++.+++  ++|.+||.|.++|+.+
T Consensus        61 ~~~~~D~liipGg~~~-~----~~~~~~~l~~~l~~~~~~~--~~i~aic~g~~~La~a  112 (187)
T cd03137          61 ALAAADTVIVPGGPDV-D----GRPPPPALLAALRRAAARG--ARVASVCTGAFVLAEA  112 (187)
T ss_pred             ccCCCCEEEECCCccc-c----cccCCHHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence            3567999999998531 1    1122356888888888754  8999999999999977

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=96.40  E-value=0.0026  Score=55.10  Aligned_cols=38  Identities=34%  Similarity=0.692  Sum_probs=26.8

Q ss_pred             eeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875        154 KFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       154 ~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~  191 (308)
                      .+.||++.+.          ....+++. ..++|+||||+|||+|+.++
T Consensus        40 iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~   88 (198)
T cd01748          40 LILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLFESS   88 (198)
T ss_pred             EEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhcccc
Confidence            3448876543          23344443 46899999999999999984

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=96.40  E-value=0.0063  Score=59.14  Aligned_cols=52  Identities=17%  Similarity=0.305  Sum_probs=34.7

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.++|.+||||.-+...    ..++.|  .+-+.+.+..++  +.||+|||-|||+|...
T Consensus       288 l~~~dlvIlPGsk~t~~----DL~~lr~~g~d~~i~~~~~~--~~~viGICGG~QmLG~~  341 (486)
T COG1492         288 LRDADLVILPGSKNTIA----DLKILREGGMDEKILEYARK--GGDVIGICGGYQMLGRR  341 (486)
T ss_pred             CCCCCEEEeCCCcccHH----HHHHHHHcCHHHHHHHHHhC--CCCEEEEcchHHhhhhh
Confidence            56789999999864221    122222  333445555553  48999999999999977

>PRK06186 hypothetical protein; Validated

Probab=96.38  E-value=0.0033  Score=55.71  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=31.4

Q ss_pred             ceeeecCCCCcc---hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        152 NLKFLPGAKRSS---LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       152 ~l~~~pg~~~~~---~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      ++.+-||-+...   -+..++.. ..++|+||||+|||++...++.++.
T Consensus        56 gilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~  104 (229)
T PRK06186         56 GIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVL  104 (229)
T ss_pred             eeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhc
Confidence            455666666544   34455553 5799999999999987777766653

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=96.33  E-value=0.0028  Score=54.58  Aligned_cols=38  Identities=32%  Similarity=0.596  Sum_probs=25.0

Q ss_pred             eeeecCCCCcc-hhh---------hHhh-hcCCCCeeeeehhHHHHHHH
Q psy12875        153 LKFLPGAKRSS-LFS---------QINE-EGVTFPVLGVCLGFELILQV  190 (308)
Q Consensus       153 l~~~pg~~~~~-~~~---------~i~~-~~~~~PilGiClG~Qll~~~  190 (308)
                      -.+.||-+.=. .++         .+++ ...++|+||||+|||||...
T Consensus        42 ~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~   90 (204)
T COG0118          42 KLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFER   90 (204)
T ss_pred             EEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence            44568887622 222         3332 13468999999999999984

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=96.29  E-value=0.0039  Score=53.99  Aligned_cols=20  Identities=45%  Similarity=0.953  Sum_probs=18.3

Q ss_pred             cCCCCeeeeehhHHHHHHHh
Q psy12875        172 GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~  191 (308)
                      ..++|+||||+|||+|+.++
T Consensus        69 ~~~~pvlGiC~G~Qll~~~~   88 (196)
T TIGR01855        69 RLGKPVLGICLGMQLLFERS   88 (196)
T ss_pred             hCCCCEEEECHHHHHhhhcc
Confidence            56899999999999999985

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=96.25  E-value=0.016  Score=51.53  Aligned_cols=67  Identities=21%  Similarity=0.229  Sum_probs=42.2

Q ss_pred             CCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        217 KRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       217 ~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                      ..+.++.|+.+.+.+       -.+.|.+ +....+.   --+++++++.|+..+   +..+..++.+-.=+-.|||...
T Consensus       175 p~~~l~rGfdd~f~~-------PhSR~t~-~~~e~i~---~~~~LeIL~es~e~G---~~l~a~k~~r~ifv~gH~EYD~  240 (307)
T COG1897         175 PHSLLTRGFDDSFLA-------PHSRYTD-VPKEDIL---AVPDLEILAESKEAG---VYLLASKDGRNIFVTGHPEYDA  240 (307)
T ss_pred             ccchhhccCCccccC-------ccccccc-CCHHHHh---hCCCceeeecccccc---eEEEecCCCCeEEEeCCcchhh
Confidence            467889998887643       1222332 3332221   235699999998777   5566666655555778999985


Q ss_pred             c
Q psy12875        297 Y  297 (308)
Q Consensus       297 ~  297 (308)
                      +
T Consensus       241 ~  241 (307)
T COG1897         241 T  241 (307)
T ss_pred             h
Confidence            4

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=96.24  E-value=0.0052  Score=52.59  Aligned_cols=48  Identities=27%  Similarity=0.442  Sum_probs=34.6

Q ss_pred             ceeeecCCCCc-c--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        152 NLKFLPGAKRS-S--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       152 ~l~~~pg~~~~-~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      .+.+..|+..+ .        ....++.. ..++|++|||+|||+|+.++||++.+.+
T Consensus        49 gvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~  106 (188)
T cd01741          49 GLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNP  106 (188)
T ss_pred             EEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCC
Confidence            46666666654 1        12233332 5679999999999999999999998753

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=96.23  E-value=0.0098  Score=51.76  Aligned_cols=72  Identities=21%  Similarity=0.323  Sum_probs=46.5

Q ss_pred             HHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHH---HHHHHHHHHHcCCCccEEEec
Q psy12875         50 VKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQ---ILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        50 ~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~---~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      ....+..|..+.+.+++..+. ++  .+.+|-+++-||.       +|.+.  .++   ..+-++++++.  ++|+++||
T Consensus        27 r~ra~~rgi~v~i~~vsl~d~-~~--~~~~Dl~~~GGgq-------D~eQ~i~t~d~~~k~~~l~~~i~~--g~p~laiC   94 (250)
T COG3442          27 RQRAEKRGIKVEIVEVSLTDT-FP--DDSYDLYFLGGGQ-------DYEQEIATRDLLTKKEGLKDAIEN--GKPVLAIC   94 (250)
T ss_pred             hHHHHhcCCceEEEEeecCCC-CC--cccccEEEecCch-------HHHHHHHhhhhccccHHHHHHHhc--CCcEEEEc
Confidence            345566787777666654332 11  2467877666664       35443  233   23446778884  49999999


Q ss_pred             hhhhHHHHH
Q psy12875        125 LGFELILQV  133 (308)
Q Consensus       125 ~G~Qll~~~  133 (308)
                      -|+|+|...
T Consensus        95 gg~QlLG~y  103 (250)
T COG3442          95 GGYQLLGQY  103 (250)
T ss_pred             cchhhccce
Confidence            999999987

>TIGR02069 cyanophycinase cyanophycinase

Probab=95.87  E-value=0.064  Score=48.32  Aligned_cols=99  Identities=16%  Similarity=0.246  Sum_probs=65.6

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe-EEEEEcCC----ChhHHHHhcCCCCEEEEcCCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR-VVPILIGQ----DREYYAEILTQINGVVIPGGGTGF   91 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~-~~~i~~~~----~~~~~~~~l~~~dGlilpGG~~~~   91 (308)
                      ..|.|.+.+.-+..          ...| .+.|.+++++.|+. +.++.+..    ++.+..+.+.++|+|++.||... 
T Consensus        27 ~~~rI~~iptAS~~----------~~~~-~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~-   94 (250)
T TIGR02069        27 EDAIIVIITSASEE----------PREV-GERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQL-   94 (250)
T ss_pred             CCceEEEEeCCCCC----------hHHH-HHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHH-
Confidence            35889988764432          1234 35788999999984 56666532    12234456889999999999520 


Q ss_pred             CCCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         92 DHPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        92 ~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                          .+.+..+  .+.+.+++++++|  .|+.|+-.|.-+|...
T Consensus        95 ----~l~~~l~~t~l~~~l~~~~~~G--~vi~G~SAGA~i~~~~  132 (250)
T TIGR02069        95 ----RITSLLGDTPLLDRLRKRVHEG--IILGGTSAGAAVMSDT  132 (250)
T ss_pred             ----HHHHHHcCCcHHHHHHHHHHcC--CeEEEccHHHHhcccc
Confidence                1222212  4566778888855  9999999999877643

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=95.86  E-value=0.011  Score=49.81  Aligned_cols=49  Identities=20%  Similarity=0.443  Sum_probs=37.7

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .++|.|++|||.. ..    +. ..+.+.++++++.+++  ++|.+||.|.++|+.+
T Consensus        59 ~~~D~l~I~Gg~~-~~----~~-~~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a  107 (170)
T cd03140          59 EDYDLLILPGGDS-WD----NP-EAPDLAGLVRQALKQG--KPVAAICGATLALARA  107 (170)
T ss_pred             hHccEEEEcCCcc-cc----cC-CcHHHHHHHHHHHHcC--CEEEEEChHHHHHHHC
Confidence            4789999999962 11    11 2346788888888854  8999999999999987

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=95.85  E-value=0.007  Score=51.96  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=60.3

Q ss_pred             hHhhh-cCCCCeeeeehhHHHHHHHhCC-----------cccccCCcccceeeecccccCCCCCCcCccCCC-hhHHHhh
Q psy12875        167 QINEE-GVTFPVLGVCLGFELILQVSNN-----------DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVP-SKYIKKF  233 (308)
Q Consensus       167 ~i~~~-~~~~PilGiClG~Qll~~~~G~-----------~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~  233 (308)
                      .|++. ..++|++|||+|||+|++.+..           ++.+...|.  .+...       ......++.. .++.   
T Consensus        62 ~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~--~~~s~-------~~~l~~~~~~~~~~~---  129 (184)
T TIGR03800        62 PLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGR--QVDSF-------EAEVDIKGVGDDPIT---  129 (184)
T ss_pred             HHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCC--ccccE-------EEEeecccCCCCcce---
Confidence            44443 5689999999999999999732           332221111  00000       0000011111 0121   


Q ss_pred             ccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        234 YQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       234 ~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                           ..+.|...|..       +|++++++|+++++    +.|++.+  ++||+|||||++.
T Consensus       130 -----~~~~h~~~v~~-------lp~~~~vla~~~~~----~~a~~~~--~~~gvQfHPE~~~  174 (184)
T TIGR03800       130 -----GVFIRAPKIVS-------VGNGVEILAKVGNR----IVAVRQG--NILVSSFHPELTD  174 (184)
T ss_pred             -----EEEEcCCCccc-------CCCCeEEEEEeCCe----eEEEEeC--CEEEEEeCCccCC
Confidence                 24678877763       89999999997664    4477655  5999999999873

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK11249 katE hydroperoxidase II; Provisional

Probab=95.72  E-value=0.034  Score=57.29  Aligned_cols=99  Identities=12%  Similarity=0.109  Sum_probs=63.4

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh-----h---HHHHhc-----CCCCEEE
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR-----E---YYAEIL-----TQINGVV   83 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-----~---~~~~~l-----~~~dGli   83 (308)
                      ..-.|||+......          ...+  ..+.++|+++|+.+.++......     .   ..+..+     ..+|+|+
T Consensus       596 ~gRKIaILVaDG~d----------~~ev--~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVv  663 (752)
T PRK11249        596 KGRKVAILLNDGVD----------AADL--LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVI  663 (752)
T ss_pred             cccEEEEEecCCCC----------HHHH--HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEE
Confidence            44568887765332          1112  35678999999988887542210     0   011112     2589999


Q ss_pred             EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +|||.....    .......+.++++++++++  ++|.+||.|.++|+.+
T Consensus       664 VPGG~~~~~----~L~~d~~al~fL~eaykHg--K~IAAiCaG~~LLaaA  707 (752)
T PRK11249        664 VPGGKANIA----DLADNGDARYYLLEAYKHL--KPIALAGDARKLKAAL  707 (752)
T ss_pred             ECCCchhHH----HHhhCHHHHHHHHHHHHcC--CEEEEeCccHHHHHhc
Confidence            999852111    1112236889999999855  9999999999999976

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.69  E-value=0.0071  Score=52.65  Aligned_cols=26  Identities=38%  Similarity=0.800  Sum_probs=20.7

Q ss_pred             hhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875        166 SQINEE-GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       166 ~~i~~~-~~~~PilGiClG~Qll~~~~  191 (308)
                      ..+++. ..++|+||||+|||+|+...
T Consensus        63 ~~i~~~~~~~~pvlGIC~G~Qll~~~~   89 (205)
T PRK13141         63 EVIKEAVASGKPLLGICLGMQLLFESS   89 (205)
T ss_pred             HHHHHHHHCCCcEEEECHHHHHhhhcc
Confidence            344443 46899999999999999975

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.67  E-value=0.019  Score=47.71  Aligned_cols=77  Identities=13%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCccEEEe
Q psy12875         47 ASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFPVLGV  123 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGI  123 (308)
                      +.+.+++++.|+++..+..... .++..+.+.++|+|++.||..  .   .+.+..+  .+.+.+++++++|  .++.|+
T Consensus         3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~--~---~l~~~l~~t~l~~~i~~~~~~G--~vi~G~   75 (154)
T PF03575_consen    3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDT--F---RLLRQLKETGLDEAIREAYRKG--GVIIGT   75 (154)
T ss_dssp             HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-H--H---HHHHHHHHTTHHHHHHHHHHTT--SEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCH--H---HHHHHHHhCCHHHHHHHHHHCC--CEEEEE
Confidence            4678999999999888876653 335556778999999999941  1   1223222  4677788888865  999999


Q ss_pred             chhhhHH
Q psy12875        124 CLGFELI  130 (308)
Q Consensus       124 C~G~Qll  130 (308)
                      -.|.-++
T Consensus        76 SAGA~i~   82 (154)
T PF03575_consen   76 SAGAMIL   82 (154)
T ss_dssp             THHHHCT
T ss_pred             ChHHhhc
Confidence            9998554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=95.67  E-value=0.019  Score=47.58  Aligned_cols=80  Identities=19%  Similarity=0.370  Sum_probs=52.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCh-------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAGARVVPILIGQDR-------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE  113 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~-------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~  113 (308)
                      ...+.++.+|.++..+......             ..+++ ...++|.|++|||....    ......+.+.++++++.+
T Consensus        16 ~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~----~~~~~~~~l~~~l~~~~~   91 (163)
T cd03135          16 TPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA----QNLADNEKLIKLLKEFNA   91 (163)
T ss_pred             HHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH----HHHHhCHHHHHHHHHHHH
Confidence            4467777788777665432110             01222 23679999999985111    011123467888888888


Q ss_pred             cCCCccEEEechhhhHHHHH
Q psy12875        114 EGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       114 ~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ++  ++|.+||.|..+|+.+
T Consensus        92 ~~--~~i~~ic~g~~~La~a  109 (163)
T cd03135          92 KG--KLIAAICAAPAVLAKA  109 (163)
T ss_pred             cC--CEEEEEchhHHHHHHc
Confidence            54  8999999999999976

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.52  E-value=0.0074  Score=52.86  Aligned_cols=19  Identities=32%  Similarity=0.866  Sum_probs=17.5

Q ss_pred             cCCCCeeeeehhHHHHHHH
Q psy12875        172 GVTFPVLGVCLGFELILQV  190 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~  190 (308)
                      ..++|+||||+|||+|+.+
T Consensus        75 ~~~~PvlGiC~G~q~l~~~   93 (209)
T PRK13146         75 AAGRPFLGICVGMQLLFER   93 (209)
T ss_pred             hCCCcEEEECHHHHHHhhc
Confidence            3689999999999999997

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=95.46  E-value=0.012  Score=51.18  Aligned_cols=20  Identities=40%  Similarity=0.868  Sum_probs=18.0

Q ss_pred             cCCCCeeeeehhHHHHHHHh
Q psy12875        172 GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~  191 (308)
                      ..++|+||||+|||+|+.++
T Consensus        69 ~~~~PilgIC~G~q~l~~~~   88 (200)
T PRK13143         69 RSGKPFLGICLGMQLLFESS   88 (200)
T ss_pred             HcCCCEEEECHHHHHHhhhh
Confidence            56799999999999999875

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=95.46  E-value=0.015  Score=58.08  Aligned_cols=39  Identities=28%  Similarity=0.564  Sum_probs=27.0

Q ss_pred             eeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875        153 LKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       153 l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~  191 (308)
                      ..+.||.+.+.          +...+++. ...+|+||||+|||+|+.++
T Consensus        47 ~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~   96 (538)
T PLN02617         47 RLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESS   96 (538)
T ss_pred             EEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence            44558876643          12234432 46899999999999999975

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=95.42  E-value=0.095  Score=46.13  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=65.6

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCe-EEEEEcCC----ChhHHHHhcCCCCEEEEcCCCCCCC
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGAR-VVPILIGQ----DREYYAEILTQINGVVIPGGGTGFD   92 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~-~~~i~~~~----~~~~~~~~l~~~dGlilpGG~~~~~   92 (308)
                      .|.|.++......          .+.+ .+.|.+++++.|+. +..+....    ++.++.+.+.++|+|++.||..  .
T Consensus        29 ~~~i~~iptA~~~----------~~~~-~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~--~   95 (217)
T cd03145          29 GARIVVIPAASEE----------PAEV-GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ--L   95 (217)
T ss_pred             CCcEEEEeCCCcC----------hhHH-HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH--H
Confidence            5888888776542          1234 35788899999985 44444431    2334555788999999999952  1


Q ss_pred             CCCchhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         93 HPNGYADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        93 ~~~~~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                         .+.+..+  .+.+.+++++++|  .|+.|+-.|.-++...
T Consensus        96 ---~~~~~l~~t~l~~~l~~~~~~G--~v~~G~SAGA~i~~~~  133 (217)
T cd03145          96 ---RITSALGGTPLLDALRKVYRGG--VVIGGTSAGAAVMSDT  133 (217)
T ss_pred             ---HHHHHHcCChHHHHHHHHHHcC--CEEEEccHHHHhhhhc
Confidence               1333222  4667778888855  9999999999887754

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=95.42  E-value=0.032  Score=47.85  Aligned_cols=54  Identities=19%  Similarity=0.325  Sum_probs=38.9

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..++|.|++|||......  ........+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        67 ~~~~D~liIpgg~~~~~~--~~~~~~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a  120 (195)
T cd03138          67 VPAPDLVIVPGLGGDPDE--LLLADNPALIAWLRRQHANG--ATVAAACTGVFLLAEA  120 (195)
T ss_pred             cCCCCEEEECCCcCCchh--hhhhccHHHHHHHHHHHHcC--CEEEEecHHHHHHHHc
Confidence            467999999998532110  01222346888888888854  8999999999999976

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=95.41  E-value=0.039  Score=46.67  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=50.4

Q ss_pred             HHHHHHHHcC-----CeEEEEEcCCCh------------hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAG-----ARVVPILIGQDR------------EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDK  110 (308)
Q Consensus        48 ~~~~~l~~aG-----~~~~~i~~~~~~------------~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~  110 (308)
                      ...+.++.+|     +++..+......            ..+. ....+|+|++|||.. ..    .....+.+.+++++
T Consensus        16 ~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~-~~~~~D~lvipgg~~-~~----~~~~~~~~~~~l~~   89 (183)
T cd03139          16 GPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFA-DPPDLDVLLVPGGGG-TR----ALVNDPALLDFIRR   89 (183)
T ss_pred             eHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccc-cCCCCCEEEECCCcc-hh----hhccCHHHHHHHHH
Confidence            3456777776     677666432210            0111 234799999999852 11    11223468888888


Q ss_pred             HHHcCCCccEEEechhhhHHHHH
Q psy12875        111 INEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       111 ~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.+++  ++|.++|.|..+|+.+
T Consensus        90 ~~~~~--k~i~aic~g~~~La~a  110 (183)
T cd03139          90 QAARA--KYVTSVCTGALLLAAA  110 (183)
T ss_pred             hcccC--CEEEEEchHHHHHHhc
Confidence            88854  8999999999888876

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=95.29  E-value=0.012  Score=54.37  Aligned_cols=22  Identities=14%  Similarity=0.005  Sum_probs=20.6

Q ss_pred             CCCCeeeeehhHHHHHHHhCCc
Q psy12875        173 VTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       173 ~~~PilGiClG~Qll~~~~G~~  194 (308)
                      ..+|+||||+|||++++++||.
T Consensus       134 ~~~s~LgICwGaQa~a~algGi  155 (302)
T PRK05368        134 HVTSTLFICWAAQAALYHLYGI  155 (302)
T ss_pred             cCCCEEEEcHHHHHHHHHcCCC
Confidence            4799999999999999999996

>TIGR01383 not_thiJ DJ-1 family protein

Probab=95.13  E-value=0.03  Score=47.24  Aligned_cols=52  Identities=23%  Similarity=0.503  Sum_probs=38.3

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ...+|.|++|||...  .  ......+.+.++++++.+++  ++|.+||.|-.+|+.+
T Consensus        61 ~~~~D~l~v~Gg~~~--~--~~~~~~~~l~~~l~~~~~~~--~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        61 LEEFDAIVLPGGMPG--A--ENLRNSKLLLNILKKQESKG--KLVAAICAAPAVLLAA  112 (179)
T ss_pred             cccCCEEEECCCchH--H--HHHhhCHHHHHHHHHHHHCC--CEEEEEChhHHHHHhc
Confidence            457999999998411  0  01112346888888888854  9999999999999976

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=94.91  E-value=0.021  Score=51.30  Aligned_cols=20  Identities=25%  Similarity=0.517  Sum_probs=17.8

Q ss_pred             cCCCCeeeeehhHHHHHHHh
Q psy12875        172 GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~  191 (308)
                      ..++|+||||+|+|+|+...
T Consensus        70 ~~g~PvLGiC~GmqlLa~~~   89 (248)
T PLN02832         70 KSGKPVWGTCAGLIFLAERA   89 (248)
T ss_pred             HcCCCEEEEChhHHHHHHHh
Confidence            46889999999999999975

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=94.67  E-value=0.03  Score=49.68  Aligned_cols=127  Identities=13%  Similarity=0.195  Sum_probs=75.0

Q ss_pred             hhHhhh-cCCCCeeeeehhHHHHHHH--hCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeec
Q psy12875        166 SQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNN  242 (308)
Q Consensus       166 ~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~  242 (308)
                      .++++. ...+|++|||.|+|+|+.+  +++.+.+...++....-.++...  ..+++++++++......+   + +.+.
T Consensus        69 ~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~~~~~~~~~~~v~--~~~~~~~~~~~~g~~~~~---p-i~H~  142 (227)
T TIGR01737        69 QEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVE--NADTIFTKNYKKGEVIRI---P-IAHG  142 (227)
T ss_pred             HHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCCceEEEeEEEEEC--CCCChhhccCCCCCEEEE---E-eEcC
Confidence            344443 5689999999999999995  88887765443321111111111  235677777764211100   1 1222


Q ss_pred             -cceeeeeccccccCCCCCeEEEEEe------------cCCCceEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875        243 -HIWCITRQDMIKYGLTETWNILTLS------------KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       243 -H~~~v~~~~~~~~~l~~~~~via~s------------~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                       |++.++++.+.  .|.+..+++.+-            +++....|+++.+++.+++|+|||||+...+|.
T Consensus       143 eG~y~~~~~~l~--~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~~~g~~~HpE~~~~~~~  211 (227)
T TIGR01737       143 EGRYYADDETLA--RLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGNVLGMMPHPERASEKLL  211 (227)
T ss_pred             CcCeEcCHHHHH--HHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCCEEEEecCchhhccccc
Confidence             35555443321  255555555443            223334699999999999999999999965543

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>KOG2764|consensus

Probab=94.34  E-value=0.19  Score=44.30  Aligned_cols=72  Identities=13%  Similarity=0.246  Sum_probs=47.4

Q ss_pred             HHHHHHcCCeEEEEEcCCC--------------hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcC
Q psy12875         50 VKNIEAAGARVVPILIGQD--------------REYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEG  115 (308)
Q Consensus        50 ~~~l~~aG~~~~~i~~~~~--------------~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g  115 (308)
                      .+.|++.|..+.....+..              ....+..-+.||.|++|||.-  ..  .+......+.+.++++.+. 
T Consensus        25 ~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~--g~--e~L~~~~~v~~lvK~q~~~-   99 (247)
T KOG2764|consen   25 IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLP--GA--ETLSECEKVVDLVKEQAES-   99 (247)
T ss_pred             HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCch--hh--hhhhhcHHHHHHHHHHHhc-
Confidence            5788899988887654322              111122236899999999941  11  2333344566777887774 


Q ss_pred             CCccEEEechhh
Q psy12875        116 VTFPVLGVCLGF  127 (308)
Q Consensus       116 ~~~PvlGIC~G~  127 (308)
                       +++|.+||.|-
T Consensus       100 -gkLIaaICaap  110 (247)
T KOG2764|consen  100 -GKLIAAICAAP  110 (247)
T ss_pred             -CCeEEEeecch
Confidence             49999999997

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=94.04  E-value=0.047  Score=53.01  Aligned_cols=47  Identities=19%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             ceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ++.+-+|-+....   +..++.. ..++|.||||||||+....+..+|--.
T Consensus       346 gIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl  396 (533)
T COG0504         346 GILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGL  396 (533)
T ss_pred             EEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCC
Confidence            4445455554432   4455543 569999999999999998777665443

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=93.89  E-value=0.044  Score=47.37  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             cCCCCeeeeehhHHHHHHHhC
Q psy12875        172 GVTFPVLGVCLGFELILQVSN  192 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G  192 (308)
                      ...+|++|||.|+|+|++.+.
T Consensus        70 ~~g~pvlgiC~G~qlL~~~~~   90 (194)
T cd01750          70 RAGGPVLGICGGYQMLGKYIV   90 (194)
T ss_pred             HCCCcEEEECHHHHHhhhhcc
Confidence            568999999999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=93.84  E-value=0.1  Score=44.35  Aligned_cols=50  Identities=14%  Similarity=0.201  Sum_probs=37.8

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..++|.|++|||.. .     .....+.+.++++++.+++  +.|.++|-|..+|+.+
T Consensus        62 ~~~~D~liipgg~~-~-----~~~~~~~~~~~l~~~~~~~--~~i~aic~g~~~La~a  111 (185)
T cd03136          62 APPLDYLFVVGGLG-A-----RRAVTPALLAWLRRAARRG--VALGGIDTGAFLLARA  111 (185)
T ss_pred             cCCCCEEEEeCCCC-c-----cccCCHHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence            45789999999842 1     1122346888888888754  8999999999999976

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=93.61  E-value=0.05  Score=49.31  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=25.8

Q ss_pred             cCCCceEEEEEEecCCCEEEEeecCCccCccc
Q psy12875        268 KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEW  299 (308)
Q Consensus       268 ~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~  299 (308)
                      +++...-|++|-..+.+++|+.-|||+....|
T Consensus       201 PNGs~~~IAGi~~~~G~vlglMpHPEr~~~~~  232 (261)
T PRK01175        201 PNGSIYNIAGITNEKGNVIGLMPHPERAFYGY  232 (261)
T ss_pred             CCCChhhcceeECCCCCEEEEcCCHHHhhchh
Confidence            33443348899999999999999999998876

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=93.11  E-value=0.18  Score=42.06  Aligned_cols=51  Identities=20%  Similarity=0.392  Sum_probs=37.0

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ...+|.|++|||..   .  ........+.+++++..+++  .+|.++|-|..+|+.+
T Consensus        59 ~~~~D~lvvpg~~~---~--~~~~~~~~l~~~l~~~~~~~--~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   59 APDFDILVVPGGPG---F--DAAAKDPALLDWLRQQHAQG--TYIAAICTGALLLAEA  109 (166)
T ss_dssp             CSCCSEEEEE-STT---H--HHHTT-HHHHHHHHHHHCCT--SEEEEETTHHHHHHHT
T ss_pred             cccCCEEEeCCCCC---c--hhcccCHHHHHHhhhhhccc--eEEeeeehHHHHHhhh
Confidence            56799999999963   0  11222346778888777744  9999999999999987

...

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=92.86  E-value=0.083  Score=45.09  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=55.3

Q ss_pred             hhHhhhcCCCCeeeeehhHHHHHHH---hC---CcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCce
Q psy12875        166 SQINEEGVTFPVLGVCLGFELILQV---SN---NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLT  239 (308)
Q Consensus       166 ~~i~~~~~~~PilGiClG~Qll~~~---~G---~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v  239 (308)
                      +.+++...++|++|||.|+|+|+..   +|   ++|.+...|+...--.         ...-+.+.              
T Consensus        64 ~~Ik~~~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~sf~---------~~~~~~~~--------------  120 (179)
T PRK13526         64 DKLYNFCSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVDSFV---------ADISFNDK--------------  120 (179)
T ss_pred             HHHHHHHcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcCCCCccceee---------eecCcCCc--------------
Confidence            3444433467999999999999983   33   4444443332110000         00000111              


Q ss_pred             eeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        240 HNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       240 ~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                       .+|---|+.+.+.  ...++.+++|+-++ .   +.+++..+  ++++-||||-+.
T Consensus       121 -~~~~vFiRAP~i~--~~~~~v~vla~~~~-~---~v~v~q~~--~l~~~FHPElt~  168 (179)
T PRK13526        121 -NITGVFIRAPKFI--VVGNQVDILSKYQN-S---PVLLRQAN--ILVSSFHPELTQ  168 (179)
T ss_pred             -eEEEEEEcCceEe--EcCCCcEEEEEECC-E---EEEEEECC--EEEEEeCCccCC
Confidence             1232223333222  16789999998643 2   55777664  999999999864

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=92.83  E-value=0.089  Score=45.59  Aligned_cols=20  Identities=15%  Similarity=0.200  Sum_probs=17.8

Q ss_pred             cCCCCeeeeehhHHHHHHHh
Q psy12875        172 GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~  191 (308)
                      ...+|++|||.|+|+|++.+
T Consensus        73 ~~g~pilgICgG~qlL~~~~   92 (198)
T cd03130          73 ESGGPIYAECGGLMYLGESL   92 (198)
T ss_pred             HcCCCEEEEcccHHHHHHHh
Confidence            45789999999999999975

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=92.58  E-value=0.33  Score=45.16  Aligned_cols=51  Identities=20%  Similarity=0.351  Sum_probs=38.4

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHh
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVS  134 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~  134 (308)
                      ...+|.|++|||.. ...     .....+.++++++.+++  ++|.+||-|..+|+.+.
T Consensus        73 ~~~~D~livpGg~~-~~~-----~~~~~l~~~l~~~~~~~--~~i~aic~g~~~La~aG  123 (322)
T PRK09393         73 LDRADTIVIPGWRG-PDA-----PVPEPLLEALRAAHARG--ARLCSICSGVFVLAAAG  123 (322)
T ss_pred             cCCCCEEEECCCCc-ccc-----cCCHHHHHHHHHHHHcC--CEEEEEcHHHHHHHhcc
Confidence            56789999999852 211     11346888888888754  89999999999999763

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=92.48  E-value=0.37  Score=42.09  Aligned_cols=80  Identities=15%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCC-hhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCCcc
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQD-REYYAEILTQINGVVIPGGGTGFDHPNGYADA-GRQILHLVDKINEEGVTFP  119 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~P  119 (308)
                      +.|+. ...++|+..|..+.-++...+ .+.++..+.+.|.|++.||.. .+   ....+ +..+.+.+++.+++|  +|
T Consensus        48 ~~Yv~-k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNT-F~---LL~~lke~gld~iIr~~vk~G--~~  120 (224)
T COG3340          48 DFYVE-KVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNT-FN---LLQELKETGLDDIIRERVKAG--TP  120 (224)
T ss_pred             HHHHH-HHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchH-HH---HHHHHHHhCcHHHHHHHHHcC--Cc
Confidence            44664 567899999999998887644 456677788899999999952 10   01112 235778889999966  99


Q ss_pred             EEEechhhh
Q psy12875        120 VLGVCLGFE  128 (308)
Q Consensus       120 vlGIC~G~Q  128 (308)
                      ..|+-.|.-
T Consensus       121 YiG~SAGA~  129 (224)
T COG3340         121 YIGWSAGAN  129 (224)
T ss_pred             eEEeccCce
Confidence            999988863

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=91.53  E-value=0.1  Score=51.41  Aligned_cols=18  Identities=22%  Similarity=0.624  Sum_probs=16.8

Q ss_pred             CCCeeeeehhHHHHHHHh
Q psy12875        174 TFPVLGVCLGFELILQVS  191 (308)
Q Consensus       174 ~~PilGiClG~Qll~~~~  191 (308)
                      .+|+||||.|+|+|++..
T Consensus        65 g~pvlGICgG~QmLg~~~   82 (476)
T PRK06278         65 DGYIIGICSGFQILSEKI   82 (476)
T ss_pred             CCeEEEEcHHHHhccccc
Confidence            799999999999999875

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=90.82  E-value=0.17  Score=45.18  Aligned_cols=123  Identities=17%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             hhHhhh-cCCCCeeeeehhHHHHHHH--hCCcccccCCcccceee----ecccccCCCCCCcCccCC-C-hhHHHhhccC
Q psy12875        166 SQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFRKSCKVQQVN----LNLKFLPGAKRSSLFSQV-P-SKYIKKFYQK  236 (308)
Q Consensus       166 ~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~~~g~~~~~~----~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~  236 (308)
                      ..++++ ..++|++|||.|+|+|+.+  +++++...+..+.....    .++...  ..++.++..+ + ..+..     
T Consensus        73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v~~~v~--~~~si~t~~~~~g~~l~~-----  145 (238)
T cd01740          73 EEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVE--NNDSPFTKGYMEGEVLRI-----  145 (238)
T ss_pred             HHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceEEEEEc--CCCCceecCCCCCCEEEE-----
Confidence            445543 5689999999999999997  88877654433221110    111111  2345555542 1 22221     


Q ss_pred             Cceeeccce---eeeeccccccCCCCCeEEEE-------------EecCCCceEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875        237 PLTHNNHIW---CITRQDMIKYGLTETWNILT-------------LSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       237 ~~v~~~H~~---~v~~~~~~~~~l~~~~~via-------------~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                         +..|.+   ..+++.+..  +-+.-+++-             .++++...-|++|-.++.+++|+..|||+....|-
T Consensus       146 ---~vaHgeG~~~~~~~~~~~--l~~~~~i~~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~GrvlglMphPer~~~~~q  220 (238)
T cd01740         146 ---PVAHGEGRFYADDETLAE--LEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVEPWQ  220 (238)
T ss_pred             ---EeECCceeeEcCHHHHHH--HHHCCCEEEEEcCCCCccccCCCCCCCChhcceEEEcCCCCEEEEcCChHHcccccc
Confidence               333432   111111100  101001110             12344433488999999999999999999988753

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>KOG2387|consensus

Probab=90.34  E-value=0.13  Score=49.40  Aligned_cols=25  Identities=28%  Similarity=0.554  Sum_probs=20.8

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      ..++|.||||||||+-...|..++-
T Consensus       390 en~iP~LGiCLGmQ~AvIEfaRnvL  414 (585)
T KOG2387|consen  390 ENKIPFLGICLGMQLAVIEFARNVL  414 (585)
T ss_pred             hcCCCeEeeehhhhHHHHHHHHHhh
Confidence            5689999999999998887765553

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=89.46  E-value=0.94  Score=43.07  Aligned_cols=48  Identities=23%  Similarity=0.368  Sum_probs=33.7

Q ss_pred             hcCCCCEEEEcCCCCCCCCCCchhHHHH-HHHHHHHHHHHcCCCccEEEechhhhH
Q psy12875         75 ILTQINGVVIPGGGTGFDHPNGYADAGR-QILHLVDKINEEGVTFPVLGVCLGFEL  129 (308)
Q Consensus        75 ~l~~~dGlilpGG~~~~~~~~~~~~~~~-~~~e~~~~~~~~g~~~PvlGIC~G~Ql  129 (308)
                      ...+++.+|+|||. |.    .|.+... .-.+.+|+++++|  --.||||.|.-.
T Consensus        46 w~~~~~LlV~PGG~-d~----~y~~~l~~~g~~~Ir~fV~~G--G~YlGiCAGaY~   94 (367)
T PF09825_consen   46 WQSKCALLVMPGGA-DL----PYCRSLNGEGNRRIRQFVENG--GGYLGICAGAYY   94 (367)
T ss_pred             cccCCcEEEECCCc-ch----HHHHhhChHHHHHHHHHHHcC--CcEEEECcchhh
Confidence            34678999999986 33    2444322 3366788888865  679999999743

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=87.97  E-value=0.39  Score=42.27  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             ecCCCceEEEEEEecCCCEEEEeecCCccCcccCCC
Q psy12875        267 SKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTES  302 (308)
Q Consensus       267 s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~  302 (308)
                      ++++...-|++|-..+.+++|+.=||||....|-.+
T Consensus       181 NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~  216 (231)
T COG0047         181 NPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGG  216 (231)
T ss_pred             CCCCChhhceeEEcCCCCEEEecCCchhhhhcccCC
Confidence            344444458899999999999999999998877653

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=87.47  E-value=0.57  Score=38.98  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             hhHhhh-cCCCCeeeeehhHHHHHHHhC
Q psy12875        166 SQINEE-GVTFPVLGVCLGFELILQVSN  192 (308)
Q Consensus       166 ~~i~~~-~~~~PilGiClG~Qll~~~~G  192 (308)
                      +.|++. ....||+|+|-|+|+|++.+-
T Consensus        33 ~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen   33 EAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             HHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            344443 567999999999999999764

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=86.63  E-value=0.76  Score=45.01  Aligned_cols=40  Identities=25%  Similarity=0.399  Sum_probs=27.0

Q ss_pred             ceeeecCCCCcc-hhhh---------Hh-hhcCCCCeeeeehhHHHHHHHh
Q psy12875        152 NLKFLPGAKRSS-LFSQ---------IN-EEGVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       152 ~l~~~pg~~~~~-~~~~---------i~-~~~~~~PilGiClG~Qll~~~~  191 (308)
                      .+.+.||..+.. ...+         +. ......|++|||-|+|+|...+
T Consensus       292 dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i  342 (486)
T COG1492         292 DLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL  342 (486)
T ss_pred             CEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence            467777776643 1112         22 2245889999999999999854

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=83.97  E-value=0.82  Score=45.14  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=17.7

Q ss_pred             cCCCCeeeeehhHHHHHHHh
Q psy12875        172 GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~  191 (308)
                      ....|++|||.|+|+|++.+
T Consensus       317 ~~G~pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       317 KEGGIVIGICGGYQMLGKEL  336 (475)
T ss_pred             HcCCcEEEEcHHHHHhhhhh
Confidence            45789999999999999965

>PRK00784 cobyric acid synthase; Provisional

Probab=83.84  E-value=0.85  Score=45.16  Aligned_cols=20  Identities=30%  Similarity=0.581  Sum_probs=18.1

Q ss_pred             cCCCCeeeeehhHHHHHHHh
Q psy12875        172 GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~  191 (308)
                      ....|++|+|.|+|+|++.+
T Consensus       323 ~~g~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        323 RRGGPVLGICGGYQMLGRRI  342 (488)
T ss_pred             HcCCeEEEECHHHHHHhhhc
Confidence            45789999999999999976

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=83.62  E-value=17  Score=30.32  Aligned_cols=68  Identities=22%  Similarity=0.227  Sum_probs=40.2

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcC-CChhHHHH----h--cCCCCEEEEcCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIG-QDREYYAE----I--LTQINGVVIPGGGT   89 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~-~~~~~~~~----~--l~~~dGlilpGG~~   89 (308)
                      .+|.+||++.....    ...+   ++ -...+..+|++.|+++.....- ++.+.+.+    .  .+.+|-||.+||. 
T Consensus         3 ~~~rv~vit~~d~~----~~~~---d~-n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGt-   73 (163)
T TIGR02667         3 IPLRIAILTVSDTR----TEED---DT-SGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGT-   73 (163)
T ss_pred             CccEEEEEEEeCcC----CccC---CC-cHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc-
Confidence            46899998765432    1111   11 1224567789999988765443 34343332    2  2468999999886 


Q ss_pred             CCCC
Q psy12875         90 GFDH   93 (308)
Q Consensus        90 ~~~~   93 (308)
                      ...+
T Consensus        74 g~g~   77 (163)
T TIGR02667        74 GFTG   77 (163)
T ss_pred             CCCC
Confidence            4444

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]

Probab=82.64  E-value=11  Score=36.34  Aligned_cols=79  Identities=19%  Similarity=0.210  Sum_probs=46.2

Q ss_pred             hhcccCCCCEEEEeccccCCCCcccccCCCC-ccchHHHHHHHHHHcCCeEEEEEcCCC-hhHH----HHhcCCCCEEEE
Q psy12875         11 STVTSTDTPVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILIGQD-REYY----AEILTQINGVVI   84 (308)
Q Consensus        11 ~~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~l~~aG~~~~~i~~~~~-~~~~----~~~l~~~dGlil   84 (308)
                      ..|.-.+||.|||.+.-..-..-..+..++. .+.-...+...++++|++++....-.| .+.+    .+.++.+|-||.
T Consensus       169 ~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviIt  248 (404)
T COG0303         169 AEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIIT  248 (404)
T ss_pred             ceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEE
Confidence            4556667899999977653311001111110 011112345788999998887665444 3333    334567999999


Q ss_pred             cCCCC
Q psy12875         85 PGGGT   89 (308)
Q Consensus        85 pGG~~   89 (308)
                      +||.+
T Consensus       249 sGG~S  253 (404)
T COG0303         249 SGGVS  253 (404)
T ss_pred             eCCcc
Confidence            99974

>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=82.30  E-value=5.6  Score=36.97  Aligned_cols=83  Identities=22%  Similarity=0.188  Sum_probs=48.7

Q ss_pred             EEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh----------------H-HHHhcCCCCEE
Q psy12875         20 VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE----------------Y-YAEILTQINGV   82 (308)
Q Consensus        20 ~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~----------------~-~~~~l~~~dGl   82 (308)
                      .|||...+...          ...-+...+.++|++.|.++..........                . .....+.+|.+
T Consensus         7 ~I~iv~~~~~~----------~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   76 (306)
T PRK03372          7 RVLLVAHTGRD----------EATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELV   76 (306)
T ss_pred             EEEEEecCCCH----------HHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEE
Confidence            48988775432          111245677889999998877654221100                0 01123458999


Q ss_pred             EEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         83 VIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        83 ilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      +.-||.  -           -++..++.+..  .++||+||-.|.
T Consensus        77 i~lGGD--G-----------T~L~aar~~~~--~~~PilGIN~G~  106 (306)
T PRK03372         77 LVLGGD--G-----------TILRAAELARA--ADVPVLGVNLGH  106 (306)
T ss_pred             EEEcCC--H-----------HHHHHHHHhcc--CCCcEEEEecCC
Confidence            999983  1           23344444444  459999999875

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=81.37  E-value=1.1  Score=39.39  Aligned_cols=128  Identities=15%  Similarity=0.237  Sum_probs=75.0

Q ss_pred             hhhHhhh-cCCCCeeeeehhHHHHHHH--hCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceee
Q psy12875        165 FSQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHN  241 (308)
Q Consensus       165 ~~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~  241 (308)
                      ..++++. ...+|++|||.|+|+|+.+  +++++.+...++...-.+.+...  ..++++++.+......   .-++..+
T Consensus        69 ~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~--~~~~~~~~~~~~g~~~---~~~~aH~  143 (219)
T PRK03619         69 MKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVE--NNDTPFTSGYEKGEVI---RIPIAHG  143 (219)
T ss_pred             HHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEEC--CCCChhhcCCCCCCEE---EEEEEcC
Confidence            3445543 5689999999999999997  88888766544431111122221  2467788776322110   0012234


Q ss_pred             ccceeeeeccccccCCCCCeEEEEEe---cCCCceEEEEEEecCCCEEEEeecCCccCcc
Q psy12875        242 NHIWCITRQDMIKYGLTETWNILTLS---KYKSWEFVSTVEHKEYPIVGIQFHPEKNAYE  298 (308)
Q Consensus       242 ~H~~~v~~~~~~~~~l~~~~~via~s---~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~  298 (308)
                      -|+|.++.+.+... ...++.++..+   +++....|+++...+..++|+|||||+....
T Consensus       144 ~~r~~~~~~~~~~l-~~~~~~~~~~~~~npngs~~~ia~i~~~~~~~~g~~~HPE~~~~~  202 (219)
T PRK03619        144 EGNYYADEETLKRL-EGNGQVVFRYCDENPNGSVNDIAGIVNEKGNVLGMMPHPERAVEP  202 (219)
T ss_pred             cccEEECHHHHHHH-HhCCcEEEEEcCCCCCCCHHHhcccCCCCCCEEEEeCCCCccccC
Confidence            46666654332211 24555544444   5554434777777666799999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
1l9x_A	315	Structure Of Gamma-Glutamyl Hydrolase Length = 315		5e-25

>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase Length = 315

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 128/288 (44%), Gaps = 68/288 (23%)
Query: 15  STDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAE 74
           +   P+IGIL Q+  +    +K Y  Y  YIAASYVK +E+AGARVVP+ +    + Y  
Sbjct: 27  TAKKPIIGILMQKCRN--KVMKNYGRY--YIAASYVKYLESAGARVVPVRLDLTEKDYEI 82
Query: 75  ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVS 134
           +   ING++ PGG                                               
Sbjct: 83  LFKSINGILFPGG----------------------------------------------- 95
Query: 135 NNDTDFRKS--CKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSN 192
               D R+S   KV ++  NL             Q  ++G  FPV G CLGFE +  + +
Sbjct: 96  --SVDLRRSDYAKVAKIFYNLSI-----------QSFDDGDYFPVWGTCLGFEELSLLIS 142
Query: 193 NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDM 252
            +     +  V  V + L F  G   S +F   P++ +     +PLT N H W ++ ++ 
Sbjct: 143 GECLLTATDTVD-VAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNF 201
Query: 253 -IKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEW 299
            +   L + +N+LT +     EF+ST+E  +YP+ G+Q+HPEK  YEW
Sbjct: 202 TMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEW 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	2e-39
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	4e-10
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	2e-04
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	2e-04

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315

 Score =  139 bits (351), Expect = 2e-39
 Identities = 75/291 (25%), Positives = 113/291 (38%), Gaps = 64/291 (21%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNY-TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILT 77
           P+IGIL Q         K   NY   YIAASYVK +E+AGARVVP+ +    + Y  +  
Sbjct: 31  PIIGILMQ-----KCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFK 85

Query: 78  QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNND 137
            ING++ PGG       + YA   +   +L  +  ++G  FPV G CLGFE +  + +  
Sbjct: 86  SINGILFPGGSVDLR-RSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISG- 143

Query: 138 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197
                +     V + L F  G   S +F                                
Sbjct: 144 ECLLTATDTVDVAMPLNFTGGQLHSRMFQNFP---------------------------- 175

Query: 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGL 257
                                + L   +  + +   +     H   +         K  L
Sbjct: 176 ---------------------TELLLSLAVEPLTANF-----HKWSLSVKNFTMNEK--L 207

Query: 258 TETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
            + +N+LT +     EF+ST+E  +YP+ G+Q+HPEK  YEW       H+
Sbjct: 208 KKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHA 258

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 23/126 (18%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILI-GQDREYYAEILT 77
           PVIGI              +    +Y    YV  I+  G    PI +   D     + ++
Sbjct: 5   PVIGITGNRLVKGVDVFYGHR--VTYTQQRYVDAIQKVGG--FPIALPIDDPSTAVQAIS 60

Query: 78  QINGVVIPGGGTGFD-HPNGY----------ADAGRQI--LHLVDKINEEGVTFPVLGVC 124
            ++G+++ GG    D  P  Y              R    + LV    + G   P+  +C
Sbjct: 61  LVDGLLLTGGQ---DITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGK--PIFAIC 115

Query: 125 LGFELI 130
            G +L+
Sbjct: 116 RGMQLV 121

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 278 VEHKEYPIVGIQFHPE 293
           + H+EYPI G+QFHPE
Sbjct: 162 IHHEEYPIYGVQFHPE 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 55/327 (16%), Positives = 95/327 (29%), Gaps = 98/327 (29%)

Query: 20  VIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--R-EYYAEI- 75
           V  +L   Y  + S +K      S +   Y++  +        +    +  R + Y ++ 
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLR 141

Query: 76  -----LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT----FPV----LG 122
                L     V+I G   G          G+  +  +D      V     F +    L 
Sbjct: 142 QALLELRPAKNVLIDGVL-GS---------GKTWV-ALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 123 VCLGFELILQVSNN-----DTDFRKSCK-VQQVNLNLKFLPGAKRSSLFSQINEEGVTFP 176
            C   E +L++        D ++         + L +  +    R  L S+  E      
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----- 245

Query: 177 VLGVCLGFELIL-QVSNNDT--DFRKSCKV------QQVNLNLKFLPGAKRS-------- 219
               CL   L+L  V N      F  SCK+      +QV     FL  A  +        
Sbjct: 246 ----CL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHS 295

Query: 220 ---------SLFSQVPSKYIKKFYQK---------PLTHNNHIWCITRQDMIKYGLTETW 261
                    SL      KY+    Q          P    + I    R  +  +   + W
Sbjct: 296 MTLTPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATW---DNW 347

Query: 262 NILTLSKYK-----SWEFVSTVEHKEY 283
             +   K       S   +   E+++ 
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKM 374

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Length = 186

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 19/95 (20%)

Query: 47  ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI-- 104
             + + I+ AG     +     +    E L  I+ ++IPGG +           G+ +  
Sbjct: 13  EEHEEAIKKAGYEAKKV-----KR--VEDLEGIDALIIPGGEST--------AIGKLMKK 57

Query: 105 LHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTD 139
             L++KI       P+LG C G  L+ + +  +  
Sbjct: 58  YGLLEKIKNSN--LPILGTCAGMVLLSKGTGINQI 90

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 278 VEHKEYPIVGIQFHPE 293
           V H    + G QFHPE
Sbjct: 156 VRHDADRVCGFQFHPE 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	100.0
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.98
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.94
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.93
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.93
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.92
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.92
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.92
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.91
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.91
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.91
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.91
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.9
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.9
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.9
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.9
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.89
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.88
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.87
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.87
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.86
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.84
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.84
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.84
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.84
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.83
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.82
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.81
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.81
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.81
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.8
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.8
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.78
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.66
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.64
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.25
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	98.65
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	98.48
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	98.41
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	98.33
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	98.31
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.21
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	98.05
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	98.04
3m3p_A	250	Glutamine amido transferase; structural genomics,	97.96
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	97.96
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	97.92
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	97.9
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.9
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	97.89
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.81
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	97.8
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	97.78
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	97.78
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	97.76
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	97.7
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	97.7
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	97.7
3uow_A	556	GMP synthetase; structural genomics consortium, SG	97.68
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	97.68
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	97.62
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	97.62
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	97.59
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	97.57
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	97.56
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	97.55
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	97.47
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	97.43
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	97.39
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	97.39
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	97.39
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	97.38
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	97.37
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	97.3
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	97.14
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	96.99
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	96.98
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	96.97
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	96.95
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	96.91
3n7t_A	247	Macrophage binding protein; seattle structural gen	96.91
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	96.88
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	96.86
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	96.85
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	96.82
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	96.81
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	96.78
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	96.62
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	96.6
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	96.54
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	96.34
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	96.21
1u9c_A	224	APC35852; structural genomics, protein structure i	96.17
2fex_A	188	Conserved hypothetical protein; structural genomic	96.15
3er6_A	209	Putative transcriptional regulator protein; struct	96.07
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	96.07
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.01
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	95.94
3gra_A	202	Transcriptional regulator, ARAC family; transcript	95.82
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	95.79
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	95.53
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	95.22
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	95.16
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	95.13
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	95.08
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	94.49
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	88.53
3pzy_A	164	MOG; ssgcid, seattle structural genomics center fo	86.7
2pjk_A	178	178AA long hypothetical molybdenum cofactor biosyn	86.39
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	84.93
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	83.63
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	83.34

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=100.00  E-value=1.4e-35  Score=274.05  Aligned_cols=229  Identities=32%  Similarity=0.581  Sum_probs=169.5

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      +.||+|||++......    .......+|+.++|+++|+++|+.+++++.+.+.+.++..++++||||||||+.++++. 
T Consensus        28 ~~~P~IGI~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~-  102 (315)
T 1l9x_A           28 AKKPIIGILMQKCRNK----VMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRS-  102 (315)
T ss_dssp             CCCCEEEEECEECCSH----HHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTC-
T ss_pred             CCCCEEEEECCccccc----ccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChh-
Confidence            4589999999865420    01111356888999999999999999999877666666667889999999998777763 


Q ss_pred             chhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCC
Q psy12875         96 GYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTF  175 (308)
Q Consensus        96 ~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~  175 (308)
                      .|.+..+.+++.++++.++++++||||||+|||+|+.+ +||+........      .+.                  ..
T Consensus       103 ~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a-~GG~~~~~~~~~------~g~------------------~~  157 (315)
T 1l9x_A          103 DYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL-ISGECLLTATDT------VDV------------------AM  157 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH-HHSSCCCEEEEE------EEE------------------EE
T ss_pred             hhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH-hCCccccccccc------cCC------------------CC
Confidence            57666667788888877654359999999999999999 899753211100      000                  00


Q ss_pred             CeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeecccccc
Q psy12875        176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKY  255 (308)
Q Consensus       176 PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~  255 (308)
                                        .+             +.  ....++++||+.++..+...+++...++++|+++|+++++...
T Consensus       158 ------------------p~-------------~~--~~~~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~  204 (315)
T 1l9x_A          158 ------------------PL-------------NF--TGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMN  204 (315)
T ss_dssp             ------------------CC-------------EE--CSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTC
T ss_pred             ------------------Ce-------------ee--ccCCCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccc
Confidence                              00             00  0112477899999988776666666777899999986554432


Q ss_pred             -CCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccCCCCCCCC
Q psy12875        256 -GLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPH  307 (308)
Q Consensus       256 -~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~~~~~~  307 (308)
                       .+|++++++|+++|+..|++++++++++++||||||||+..++|+....+||
T Consensus       205 ~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~  257 (315)
T 1l9x_A          205 EKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISH  257 (315)
T ss_dssp             HHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCC
T ss_pred             cccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCc
Confidence             2788999999999988888899999888999999999999999997444566

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.98  E-value=6.6e-32  Score=242.32  Aligned_cols=208  Identities=21%  Similarity=0.340  Sum_probs=137.1

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      |||+|||+++......  ....+...+|+.++|+++|+++|+.++++|+..+.+ ++..++.+||||+|||+ +++|. .
T Consensus         3 ~~p~IGi~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~-~~~~l~~~DGlil~GG~-~v~P~-~   77 (254)
T 3fij_A            3 LKPVIGITGNRLVKGV--DVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPST-AVQAISLVDGLLLTGGQ-DITPQ-L   77 (254)
T ss_dssp             CCCEEEEEC--------------------CHHHHHHHHHHTCEEEEECCCCGGG-HHHHHHTCSEEEECCCS-CCCGG-G
T ss_pred             CCCEEEEeCCcccccc--cccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchH-HHHHHhhCCEEEECCCC-CCChh-h
Confidence            7899999998643310  011223467889999999999999999999876655 77778899999999998 66663 2


Q ss_pred             hhH----------HHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcch
Q psy12875         97 YAD----------AGR--QILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSL  164 (308)
Q Consensus        97 ~~~----------~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~  164 (308)
                      |.+          ..+  ..+++++++.+.  ++||||||+|||+|+.+ +||++.++......  ..+.+...      
T Consensus        78 yg~~~~~~~~~~~~~rd~~~~~lir~a~~~--~~PiLGIC~G~Qll~~a-~Gg~v~~~~~~~~~--~~~~h~~~------  146 (254)
T 3fij_A           78 YLEEPSQEIGAYFPPRDSYEIALVRAALDA--GKPIFAICRGMQLVNVA-LGGTLYQDISQVET--KALQHLQR------  146 (254)
T ss_dssp             GTCCCCTTCCCCCHHHHHHHHHHHHHHHHT--TCCEEEETHHHHHHHHH-TTCCEESSGGGSSS--CCCCCBCC------
T ss_pred             cCCccCcccCCcChhhhHHHHHHHHHHHHc--CCCEEEECHHHHHHHHH-hCCceecccccccC--ccccccCC------
Confidence            322          223  345667888874  49999999999999999 99998644210000  00111000      


Q ss_pred             hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccc
Q psy12875        165 FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHI  244 (308)
Q Consensus       165 ~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~  244 (308)
                               +.+-+|                       ...+..       .+++++++.++..+.        ++++|+
T Consensus       147 ---------~~~~~g-----------------------~~~v~~-------~~~s~l~~~~~~~~~--------v~~~H~  179 (254)
T 3fij_A          147 ---------VDEQLG-----------------------SHTIDI-------EPTSELAKHHPNKKL--------VNSLHH  179 (254)
T ss_dssp             ---------SCTTSC-----------------------CEEEEE-------CTTSSGGGTCCTTEE--------ECCBCS
T ss_pred             ---------CCCccc-----------------------eEEEEe-------CCCChHHHhcCCcEE--------EEEecc
Confidence                     000011                       111111       246778887766443        488999


Q ss_pred             eeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec-CCC-EEEEeecCCccCc
Q psy12875        245 WCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK-EYP-IVGIQFHPEKNAY  297 (308)
Q Consensus       245 ~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~-~~p-~~GvQFHPE~~~~  297 (308)
                      +.|..       +|++++++|+++++.   ++|++++ ++| ++|+|||||++.+
T Consensus       180 ~~v~~-------l~~g~~v~a~s~dg~---ieai~~~~~~~~~~gvQfHPE~~~~  224 (254)
T 3fij_A          180 QFIKK-------LAPSFKVTARTADGM---IEAVEGDNLPSWYLGVQWHPELMFQ  224 (254)
T ss_dssp             CEESS-------CCSSEEEEEEETTCC---EEEEEESSCSSCEEEESSCGGGTGG
T ss_pred             chhhc-------cCCCcEEEEEeCCCc---EEEEEecCCCCeEEEEEcCCccCCC
Confidence            99863       899999999998875   7899999 887 8999999999875

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.94  E-value=5.4e-26  Score=195.94  Aligned_cols=171  Identities=19%  Similarity=0.292  Sum_probs=117.6

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccE
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPV  120 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pv  120 (308)
                      ++| ...+.++|+++|+++.+++.+. +.+++..  .++||||++||+.+...   . +......++++++ +  .++|+
T Consensus        11 ~s~-~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil~gG~~~~~~---~-~~~~~~~~~i~~~-~--~~~Pv   80 (195)
T 1qdl_B           11 DSF-VYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEK---R-EDIGVSLDVIKYL-G--KRTPI   80 (195)
T ss_dssp             CSS-HHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTS---H-HHHTTHHHHHHHH-T--TTSCE
T ss_pred             Cch-HHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChhh---h-hhhhHHHHHHHHh-c--CCCcE
Confidence            345 3578899999999999999753 2222222  16999999888633222   1 1011234556653 4  35999


Q ss_pred             EEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCC
Q psy12875        121 LGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS  200 (308)
Q Consensus       121 lGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~  200 (308)
                      ||||+|||+|+.+ +||++.+...        ..                                             +
T Consensus        81 LGIC~G~QlL~~~-~gg~v~~~~~--------~~---------------------------------------------~  106 (195)
T 1qdl_B           81 LGVCLGHQAIGYA-FGAKIRRARK--------VF---------------------------------------------H  106 (195)
T ss_dssp             EEETHHHHHHHHH-TTCEEEEEEE--------EE---------------------------------------------E
T ss_pred             EEEehHHHHHHHH-hCCEEeccCC--------Cc---------------------------------------------C
Confidence            9999999999999 9998743210        00                                             0


Q ss_pred             cccceeeecccccCCCCCC--cCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEE
Q psy12875        201 CKVQQVNLNLKFLPGAKRS--SLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVST  277 (308)
Q Consensus       201 g~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~a  277 (308)
                      |....+.+       ..++  ++|++++..+.        ++++|++++..       +|++++++|++ +++.   ++|
T Consensus       107 g~~~~v~~-------~~~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------l~~~~~vla~s~~~g~---i~a  161 (195)
T 1qdl_B          107 GKISNIIL-------VNNSPLSLYYGIAKEFK--------ATRYHSLVVDE-------VHRPLIVDAISAEDNE---IMA  161 (195)
T ss_dssp             EEEEEEEE-------CCSSCCSTTTTCCSEEE--------EEEEEEEEEEC-------CCTTEEEEEEESSSCC---EEE
T ss_pred             CCceEEEE-------CCCCHhHHHhcCCCceE--------Eeccccchhhh-------CCCCcEEEEEECCCCc---EEE
Confidence            11111111       1244  78888876554        49999999963       88999999999 7875   789


Q ss_pred             EEecCCCEEEEeecCCccCcccCC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      +++++++++|+|||||++.+++|.
T Consensus       162 ~~~~~~~~~gvQfHPE~~~~~~g~  185 (195)
T 1qdl_B          162 IHHEEYPIYGVQFHPESVGTSLGY  185 (195)
T ss_dssp             EEESSSSEEEESSBTTSTTCTTHH
T ss_pred             EEeCCCCEEEEecCCCCCCCccHH
Confidence            999988899999999999877653

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.93  E-value=6.1e-26  Score=198.19  Aligned_cols=165  Identities=20%  Similarity=0.313  Sum_probs=116.3

Q ss_pred             CccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCC-CCCCCCCCchhH-HHHHHHHHHHHHHHcCCCc
Q psy12875         41 YTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGG-GTGFDHPNGYAD-AGRQILHLVDKINEEGVTF  118 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG-~~~~~~~~~~~~-~~~~~~e~~~~~~~~g~~~  118 (308)
                      +++| ..+|+++|+++|+.+++++++.+.+    .+.++||||+||| +.+.     |.. ....+.+.+   .+  .++
T Consensus        22 ~~~~-~~~~~~~l~~~G~~~~vv~~~~~~~----~l~~~DglIl~GG~p~~~-----~~~~~~~~l~~~~---~~--~~~   86 (212)
T 2a9v_A           22 GGQW-THREWRVLRELGVDTKIVPNDIDSS----ELDGLDGLVLSGGAPNID-----EELDKLGSVGKYI---DD--HNY   86 (212)
T ss_dssp             SCCT-TCHHHHHHHHTTCBCCEEETTSCGG----GGTTCSEEEEEEECSCGG-----GTGGGHHHHHHHH---HH--CCS
T ss_pred             CCcc-HHHHHHHHHHCCCEEEEEeCCCCHH----HHhCCCEEEECCCCCCCC-----cccccchhHHHHH---Hh--CCC
Confidence            3456 3478999999999999999765333    4566999999999 4332     222 112333333   34  359


Q ss_pred             cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      |+||||+|||+|+.+ +||++.+...                               |.+|+.            .+.. 
T Consensus        87 PiLGIC~G~Qll~~~-lGg~v~~~~~-------------------------------~~~G~~------------~v~~-  121 (212)
T 2a9v_A           87 PILGICVGAQFIALH-FGASVVKAKH-------------------------------PEFGKT------------KVSV-  121 (212)
T ss_dssp             CEEEETHHHHHHHHH-TTCEEEEEEE-------------------------------EEEEEE------------EEEE-
T ss_pred             CEEEEChHHHHHHHH-hCCEEEcCCC-------------------------------cccCce------------eeEE-
Confidence            999999999999999 9998743210                               112221            1111 


Q ss_pred             CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875        199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV  278 (308)
Q Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai  278 (308)
                                       .++++++++++..+.        ++++|++.+..       +|++++++|+++++.   ++|+
T Consensus       122 -----------------~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------l~~~~~vlA~s~d~~---i~ai  166 (212)
T 2a9v_A          122 -----------------MHSENIFGGLPSEIT--------VWENHNDEIIN-------LPDDFTLAASSATCQ---VQGF  166 (212)
T ss_dssp             -----------------SCCCGGGTTCCSEEE--------EEEEEEEEEES-------CCTTEEEEEECSSCS---CSEE
T ss_pred             -----------------CCCChhHhcCCCceE--------EEeEhhhhHhh-------CCCCcEEEEEeCCCC---EEEE
Confidence                             135678887765443        48999999863       889999999998876   6699


Q ss_pred             EecCCCEEEEeecCCccCcccC
Q psy12875        279 EHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       279 ~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                      ++++.+++|+|||||++.++.+
T Consensus       167 ~~~~~~i~gvQfHPE~~~~~~g  188 (212)
T 2a9v_A          167 YHKTRPIYATQFHPEVEHTQYG  188 (212)
T ss_dssp             EESSSSEEEESSCTTSTTSTTH
T ss_pred             EECCCCEEEEEeCCCCCCCccH
Confidence            9987889999999999976543

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.93  E-value=2.3e-25  Score=190.84  Aligned_cols=165  Identities=21%  Similarity=0.387  Sum_probs=114.2

Q ss_pred             cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875         43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG  122 (308)
Q Consensus        43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG  122 (308)
                      +| ..++.++|+++|+.+++++...+.+++..  .++||||+|||+ +..   .+.    ...++++++.+.  ++|+||
T Consensus        11 ~~-~~~~~~~l~~~G~~~~~~~~~~~~~~~~~--~~~dglil~Gg~-~~~---~~~----~~~~~i~~~~~~--~~PilG   77 (189)
T 1wl8_A           11 QY-VHRIWRTLRYLGVETKIIPNTTPLEEIKA--MNPKGIIFSGGP-SLE---NTG----NCEKVLEHYDEF--NVPILG   77 (189)
T ss_dssp             TT-HHHHHHHHHHTTCEEEEEETTCCHHHHHH--TCCSEEEECCCS-CTT---CCT----THHHHHHTGGGT--CSCEEE
T ss_pred             ch-HHHHHHHHHHCCCeEEEEECCCChHHhcc--cCCCEEEECCCC-Chh---hhh----hHHHHHHHHhhC--CCeEEE
Confidence            44 35889999999999999997654333322  469999999996 322   111    234555655453  499999


Q ss_pred             echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875        123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK  202 (308)
Q Consensus       123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~  202 (308)
                      ||+|||+|+.+ +||++.+...                               +..|+.            .+.      
T Consensus        78 IC~G~Q~l~~~-~gg~v~~~~~-------------------------------~~~G~~------------~~~------  107 (189)
T 1wl8_A           78 ICLGHQLIAKF-FGGKVGRGEK-------------------------------AEYSLV------------EIE------  107 (189)
T ss_dssp             ETHHHHHHHHH-HTCEEEECSC-------------------------------CSCEEE------------EEE------
T ss_pred             EcHHHHHHHHH-hCCceecCCC-------------------------------cccCce------------eEE------
Confidence            99999999999 9998743110                               001110            110      


Q ss_pred             cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875        203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE  282 (308)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~  282 (308)
                           .       .+++++|++++.++.        ++++|++.+..       +|++++++|+++++.   ++|+++++
T Consensus       108 -----~-------~~~~~l~~~~~~~~~--------~~~~h~~~v~~-------l~~~~~vla~s~~g~---i~a~~~~~  157 (189)
T 1wl8_A          108 -----I-------IDEXEIFKGLPKRLK--------VWESHMDEVKE-------LPPKFKILARSETCP---IEAMKHEE  157 (189)
T ss_dssp             -----E-------SCC--CCTTSCSEEE--------EEECCSEEEEE-------CCTTEEEEEEESSCS---CSEEEESS
T ss_pred             -----E-------ecCchHHhCCCCceE--------EEEEeeeehhh-------CCCCcEEEEEcCCCC---EEEEEeCC
Confidence                 0       125567877765443        37788877753       889999999998876   66999998


Q ss_pred             CCEEEEeecCCccCcccC
Q psy12875        283 YPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       283 ~p~~GvQFHPE~~~~~~~  300 (308)
                      +|++|+|||||++.++++
T Consensus       158 ~~~~gvQfHPE~~~~~~g  175 (189)
T 1wl8_A          158 LPIYGVQFHPEVAHTEKG  175 (189)
T ss_dssp             SCEEEESSCTTSTTSTTH
T ss_pred             ceEEEEecCCCcCCCcch
Confidence            889999999999987665

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.92  E-value=5.1e-25  Score=189.29  Aligned_cols=168  Identities=15%  Similarity=0.161  Sum_probs=109.7

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcC--CCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCcc
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILT--QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFP  119 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~--~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~P  119 (308)
                      ++| ..+++++|++.|+++++++++.+.+++.+.+.  +.+++|++||+.+...   . .    ....+.++.+  .++|
T Consensus        10 ~s~-~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~---~-~----~~~~l~~~~~--~~~P   78 (192)
T 1i1q_B           10 DSF-TWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSE---A-G----CMPELLTRLR--GKLP   78 (192)
T ss_dssp             CSS-HHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGG---S-T----THHHHHHHHB--TTBC
T ss_pred             ccH-HHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchh---C-c----hHHHHHHHHh--cCCC
Confidence            454 56889999999999999998755455544433  3456777777533221   1 1    1122223344  3499


Q ss_pred             EEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        120 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       120 vlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      |||||+|||+|+.+ +||++.+...            +.                                         
T Consensus        79 ilGIC~G~Qll~~~-~Gg~v~~~~~------------~~-----------------------------------------  104 (192)
T 1i1q_B           79 IIGICLGHQAIVEA-YGGYVGQAGE------------IL-----------------------------------------  104 (192)
T ss_dssp             EEEETHHHHHHHHH-TSCCCCC---------------CC-----------------------------------------
T ss_pred             EEEECcChHHHHHH-hCCEEEeCCC------------cE-----------------------------------------
Confidence            99999999999999 8997632100            00                                         


Q ss_pred             CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEE
Q psy12875        200 SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVE  279 (308)
Q Consensus       200 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~  279 (308)
                      +|....+.        ..++++|++++.++.        ++++|++.+..       +|++++++|.+ ++   ++++++
T Consensus       105 ~g~~~~~~--------~~~~~l~~~~~~~~~--------v~~~H~~~v~~-------lp~~~~v~a~~-~~---~~~ai~  157 (192)
T 1i1q_B          105 HGKATSIE--------HDGQAMFAGLANPLP--------VARYHSLVGSN-------VPAGLTINAHF-NG---MVMAVR  157 (192)
T ss_dssp             SSEEEEEE--------ECCCGGGTTSCSSEE--------EEECCC---CC-------CCTTCEEEEEE-TT---EEEEEE
T ss_pred             ecceeEEe--------cCCChHHhcCCCCcE--------EEechhhHhhh-------CCCccEEEECC-CC---cEEEEE
Confidence            01111111        124568887765543        59999999863       88999999964 33   488999


Q ss_pred             ecCCCEEEEeecCCccCcccCC
Q psy12875        280 HKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       280 ~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++||+|||||++.+++|.
T Consensus       158 ~~~~~~~gvQfHPE~~~~~~g~  179 (192)
T 1i1q_B          158 HDADRVCGFQFHPESILTTQGA  179 (192)
T ss_dssp             ETTTTEEEESSBTTSTTCTTHH
T ss_pred             ECCCCEEEEEccCcccCCcccH
Confidence            9888999999999999887764

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.92  E-value=5.1e-25  Score=195.75  Aligned_cols=163  Identities=19%  Similarity=0.206  Sum_probs=114.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      ++.+++++.|..+.+++++.. +.++..++++||||+|||+.+.... ....+.+...++++++.+.+  +||||||+||
T Consensus        28 ~i~~~l~~~G~~v~v~~~~~~-~~~~~~l~~~Dglil~GG~~~~~~~-~~~~~l~~~~~~i~~~~~~~--~PiLGIC~G~  103 (239)
T 1o1y_A           28 MMEDIFREKNWSFDYLDTPKG-EKLERPLEEYSLVVLLGGYMGAYEE-EKYPFLKYEFQLIEEILKKE--IPFLGICLGS  103 (239)
T ss_dssp             HHHHHHHHTTCEEEEECGGGT-CCCSSCGGGCSEEEECCCSCCTTCT-TTCTHHHHHHHHHHHHHHHT--CCEEEETHHH
T ss_pred             HHHHHHHhCCCcEEEeCCcCc-cccccchhcCCEEEECCCCccccCC-ccChhHHHHHHHHHHHHHCC--CCEEEEchhH
Confidence            457899999999887776432 2233356789999999997443321 11223346677788887754  9999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.+ +||++.+...             |                 |.+|+.            .+.           
T Consensus       104 QlL~~a-lGG~v~~~~~-------------g-----------------~~~G~~------------~v~-----------  129 (239)
T 1o1y_A          104 QMLAKV-LGASVYRGKN-------------G-----------------EEIGWY------------FVE-----------  129 (239)
T ss_dssp             HHHHHH-TTCCEEECTT-------------C-----------------CEEEEE------------EEE-----------
T ss_pred             HHHHHH-cCCeEecCCC-------------C-----------------CccccE------------EEE-----------
Confidence            999999 9998753210             0                 112221            111           


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG  287 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G  287 (308)
                      .       .+++++|++++..+.        ++++|++.+.        +|++++++|+++++.   ++++++++  ++|
T Consensus       130 ~-------~~~~~l~~~~~~~~~--------~~~~H~~~v~--------lp~~~~vlA~s~~~~---iea~~~~~--i~g  181 (239)
T 1o1y_A          130 K-------VSDNKFFREFPDRLR--------VFQWHGDTFD--------LPRRATRVFTSEKYE---NQGFVYGK--AVG  181 (239)
T ss_dssp             E-------CCCCGGGTTSCSEEE--------EEEEESEEEC--------CCTTCEEEEECSSCS---CSEEEETT--EEE
T ss_pred             E-------CCCCchHHhCCCCce--------eEeecCCccc--------cCCCCEEEEEcCCCC---EEEEEECC--EEE
Confidence            0       236678888776544        4889999873        789999999998877   55999985  999


Q ss_pred             EeecCCccC
Q psy12875        288 IQFHPEKNA  296 (308)
Q Consensus       288 vQFHPE~~~  296 (308)
                      +|||||++.
T Consensus       182 vQfHPE~~~  190 (239)
T 1o1y_A          182 LQFHIEVGA  190 (239)
T ss_dssp             ESSBSSCCH
T ss_pred             EEeCccCCH
Confidence            999999964

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.92  E-value=2.7e-25  Score=194.91  Aligned_cols=161  Identities=20%  Similarity=0.299  Sum_probs=108.9

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      .++.++|+++|+.+++++++.+.++++.  .++||||+|||+.+.     |......   ..+++.+  .++||||||+|
T Consensus        38 ~~i~~~l~~~G~~~~vv~~~~~~~~l~~--~~~dglil~Gg~~~~-----~~~~~~~---~~~~~~~--~~~PilGIC~G  105 (218)
T 2vpi_A           38 KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSV-----YAEDAPW---FDPAIFT--IGKPVLGICYG  105 (218)
T ss_dssp             HHHHHHHHHTTCCEEEECTTCCHHHHHH--HTCSEEEEEC--------------CCC---CCGGGGT--SSCCEEEETHH
T ss_pred             HHHHHHHHHCCCEEEEEECCCChHHHhh--cCCCEEEECCCCccc-----ccccchh---HHHHHHH--cCCCEEEEcHH
Confidence            4778999999999999998776554443  579999999997422     2110001   1122234  34899999999


Q ss_pred             hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875        127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV  206 (308)
Q Consensus       127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~  206 (308)
                      ||+|+.+ +||++.+...                               +..|+                       ..+
T Consensus       106 ~Qll~~~-~GG~v~~~~~-------------------------------~~~G~-----------------------~~v  130 (218)
T 2vpi_A          106 MQMMNKV-FGGTVHKKSV-------------------------------REDGV-----------------------FNI  130 (218)
T ss_dssp             HHHHHHH-TTCCEEEEEE-------------------------------CSCEE-----------------------EEE
T ss_pred             HHHHHHH-hCCceEeCCC-------------------------------CcccE-----------------------EEE
Confidence            9999998 8998643210                               00011                       011


Q ss_pred             eecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEE
Q psy12875        207 NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIV  286 (308)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~  286 (308)
                      .+       .++++||++++.++.        ++++|++++..       +|++++++|++ ++   +++|+++++.+++
T Consensus       131 ~~-------~~~~~l~~~l~~~~~--------v~~~H~~~v~~-------l~~~~~vlA~s-~~---~i~ai~~~~~~i~  184 (218)
T 2vpi_A          131 SV-------DNTCSLFRGLQKEEV--------VLLTHGDSVDK-------VADGFKVVARS-GN---IVAGIANESKKLY  184 (218)
T ss_dssp             EE-------CTTSGGGTTCCSEEE--------EEECSEEEESS-------CCTTCEEEEEE-TT---EEEEEEETTTTEE
T ss_pred             EE-------ccCChhHhcCCCCcE--------EeehhhhHhhh-------cCCCCEEEEEc-CC---eEEEEEECCCCEE
Confidence            11       136788888876543        48999999963       88999999998 43   5899999888999


Q ss_pred             EEeecCCccCcccC
Q psy12875        287 GIQFHPEKNAYEWT  300 (308)
Q Consensus       287 GvQFHPE~~~~~~~  300 (308)
                      |+|||||++.++.|
T Consensus       185 gvQfHPE~~~~~~g  198 (218)
T 2vpi_A          185 GAQFHPEVGLTENG  198 (218)
T ss_dssp             EESSCTTSTTSTTH
T ss_pred             EEEcCCCCCCChhH
Confidence            99999999986554

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.91  E-value=4.2e-24  Score=209.80  Aligned_cols=185  Identities=15%  Similarity=0.171  Sum_probs=123.4

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      ..+.|+|+-..              .+|. +++.++|+++|+.++++|++.+.+++...  ++||||||||+.+.... .
T Consensus         6 ~~~~IlIlD~g--------------~~~~-~~i~r~lr~~G~~~~i~p~~~~~~~i~~~--~~dgiILsGGp~s~~~~-~   67 (525)
T 1gpm_A            6 HKHRILILDFG--------------SQYT-QLVARRVRELGVYCELWAWDVTEAQIRDF--NPSGIILSGGPESTTEE-N   67 (525)
T ss_dssp             TSSEEEEEECS--------------CTTH-HHHHHHHHHTTCEEEEEESCCCHHHHHHH--CCSEEEECCCSSCTTST-T
T ss_pred             CCCEEEEEECC--------------CccH-HHHHHHHHHCCCEEEEEECCCCHHHHhcc--CCCEEEECCcCcccccc-C
Confidence            45778877432              2353 67899999999999999988776655543  67999999998644331 0


Q ss_pred             hhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCC
Q psy12875         97 YADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP  176 (308)
Q Consensus        97 ~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~P  176 (308)
                      .    ..+   .+++.+  .++||||||+|||+|+.+ +||++.+..                               .+
T Consensus        68 ~----~~~---~~~~~~--~g~PvLGIC~G~Qlla~~-~GG~V~~~~-------------------------------~~  106 (525)
T 1gpm_A           68 S----PRA---PQYVFE--AGVPVFGVCYGMQTMAMQ-LGGHVEASN-------------------------------ER  106 (525)
T ss_dssp             C----CCC---CGGGGT--SSSCEEEETHHHHHHHHH-HTCEEECCS-------------------------------SC
T ss_pred             C----cch---HHHHHH--CCCCEEEEChHHHHHHHH-cCCEEEeCC-------------------------------Cc
Confidence            0    001   122233  348999999999999988 888763211                               01


Q ss_pred             eeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC
Q psy12875        177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG  256 (308)
Q Consensus       177 ilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~  256 (308)
                      .+|+-            .+           ..       ..+++||++++............++++|++.|..       
T Consensus       107 e~G~~------------~v-----------~~-------~~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~-------  149 (525)
T 1gpm_A          107 EFGYA------------QV-----------EV-------VNDSALVRGIEDALTADGKPLLDVWMSHGDKVTA-------  149 (525)
T ss_dssp             EEEEE------------EE-----------EE-------CSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE-------
T ss_pred             ccceE------------EE-----------Ee-------CCCCHhhccCccccccccccceEEEEEccceeee-------
Confidence            11110            11           11       1356788888651100000012358999999974       


Q ss_pred             CCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccC
Q psy12875        257 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       257 l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~  300 (308)
                      +|++|+++|+++++.   ++|++++++++||+|||||++.++.|
T Consensus       150 lp~g~~v~A~s~~~~---i~ai~~~~~~i~gvQFHPE~~~~~~g  190 (525)
T 1gpm_A          150 IPSDFITVASTESCP---FAIMANEEKRFYGVQFHPEVTHTRQG  190 (525)
T ss_dssp             CCTTCEEEEECSSCS---CSEEEETTTTEEEESBCTTSTTSTTH
T ss_pred             CCCCCEEEEECCCCC---EEEEEECCCCEEEEecCCCCCcchhH
Confidence            899999999998876   66999988899999999999987654

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.91  E-value=3.2e-24  Score=191.52  Aligned_cols=163  Identities=12%  Similarity=0.112  Sum_probs=114.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      ++.++|++.|.++.++.+...+. ++..++++||||+|||+.+...  . ..+.+.+.++++++.+.+  +||||||+||
T Consensus        19 ~i~~~l~~~G~~v~v~~~~~~~~-~p~~~~~~d~lIl~GGp~~~~d--~-~~~~~~~~~~i~~~~~~~--~PvlGIC~G~   92 (250)
T 3m3p_A           19 HFGDFLAGEHIPFQVLRMDRSDP-LPAEIRDCSGLAMMGGPMSAND--D-LPWMPTLLALIRDAVAQR--VPVIGHCLGG   92 (250)
T ss_dssp             HHHHHHHHTTCCEEEEEGGGTCC-CCSCGGGSSEEEECCCSSCTTS--C-CTTHHHHHHHHHHHHHHT--CCEEEETHHH
T ss_pred             HHHHHHHHCCCeEEEEeccCCCc-CcCccccCCEEEECCCCCcccc--c-chHHHHHHHHHHHHHHcC--CCEEEECHHH
Confidence            56788999999999888653221 2224678999999999865433  1 122345667778777754  9999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.+ +||++.+..                               .|.+|+.            .|...         
T Consensus        93 Qll~~~-lGG~V~~~~-------------------------------~~e~G~~------------~v~~~---------  119 (250)
T 3m3p_A           93 QLLAKA-MGGEVTDSP-------------------------------HAEIGWV------------RAWPQ---------  119 (250)
T ss_dssp             HHHHHH-TTCCEEEEE-------------------------------EEEEEEE------------EEEEC---------
T ss_pred             HHHHHH-hCCEEEeCC-------------------------------CCceeeE------------EEEEe---------
Confidence            999999 999875321                               0122321            11110         


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG  287 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G  287 (308)
                            +....+++| +++..+.        ++++|++.+.        +|++++++|+++++.   ++|+++++ ++||
T Consensus       120 ------~~~~~~~l~-g~~~~~~--------v~~~H~~~v~--------lp~~~~vlA~s~~~~---~~a~~~~~-~~~G  172 (250)
T 3m3p_A          120 ------HVPQALEWL-GTWDELE--------LFEWHYQTFS--------IPPGAVHILRSEHCA---NQAYVLDD-LHIG  172 (250)
T ss_dssp             ------SSHHHHHHH-SCSSCEE--------EEEEEEEEEC--------CCTTEEEEEEETTEE---EEEEEETT-TEEE
T ss_pred             ------cCCCCcccc-cCCCccE--------EEEEccceee--------cCCCCEEEEEeCCCC---EEEEEECC-eeEE
Confidence                  000124577 6665544        4999999983        899999999998875   77999987 6999


Q ss_pred             EeecCCccC
Q psy12875        288 IQFHPEKNA  296 (308)
Q Consensus       288 vQFHPE~~~  296 (308)
                      +|||||++.
T Consensus       173 vQfHPE~~~  181 (250)
T 3m3p_A          173 FQCHIEMQA  181 (250)
T ss_dssp             ESSCTTCCH
T ss_pred             EEeCCcCCH
Confidence            999999974

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.91  E-value=1.7e-24  Score=188.51  Aligned_cols=175  Identities=21%  Similarity=0.345  Sum_probs=106.5

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHH--HHHHHHHHHcCCCccEEEec
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQI--LHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~--~e~~~~~~~~g~~~PvlGIC  124 (308)
                      .|+.++|+++|++++++.   +++    .++++||||+|||++       +....+.+  .++++.+.+.  ++||||||
T Consensus        16 ~si~~al~~~G~~~~v~~---~~~----~l~~~D~lilPG~g~-------~~~~~~~~~~~~~i~~~~~~--~~PvlGIC   79 (211)
T 4gud_A           16 SSVKFAIERLGYAVTISR---DPQ----VVLAADKLFLPGVGT-------ASEAMKNLTERDLIELVKRV--EKPLLGIC   79 (211)
T ss_dssp             HHHHHHHHHTTCCEEEEC---CHH----HHHHCSEEEECCCSC-------HHHHHHHHHHTTCHHHHHHC--CSCEEEET
T ss_pred             HHHHHHHHHCCCEEEEEC---CHH----HHhCCCEEEECCCCC-------HHHHHHHHHhcChHHHHHHc--CCCEEEEc
Confidence            578999999999988753   344    355689999999863       33322222  2234455553  49999999


Q ss_pred             hhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccc
Q psy12875        125 LGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ  204 (308)
Q Consensus       125 ~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~  204 (308)
                      +|||+|+.+ +|+.......    ...++.+.+++.+..     .......+..|                         
T Consensus        80 lG~QlL~~~-~g~~~~~~~~----~~~gl~~~~~~v~~~-----~~~~~~~~~~~-------------------------  124 (211)
T 4gud_A           80 LGMQLLGKL-SEEKGQKADE----IVQCLGLVDGEVRLL-----QTGDLPLPHMG-------------------------  124 (211)
T ss_dssp             HHHHTTSSE-ECCC----CC----CEECCCSSSCEEEEC-----CCTTSCSSEEE-------------------------
T ss_pred             hhHhHHHHH-hCCcccccCC----ccccceeccceEEEc-----ccCCcceeecc-------------------------
Confidence            999999999 8887542211    112344444432211     00011122222                         


Q ss_pred             eeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875        205 QVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYP  284 (308)
Q Consensus       205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p  284 (308)
                         ++....  ...++++++++....        ++++|++.+.          .+..++|+++++.. ++++++.  +|
T Consensus       125 ---~~~~~~--~~~~~l~~~l~~~~~--------~~~~H~~~v~----------~~~~~~a~~~~g~~-~~~~v~~--~~  178 (211)
T 4gud_A          125 ---WNTVQV--KEGHPLFNGIEPDAY--------FYFVHSFAMP----------VGDYTIAQCEYGQP-FSAAIQA--GN  178 (211)
T ss_dssp             ---EECCEE--CTTCGGGTTCCTTCC--------EEEEESEECC----------CCTTEEEEEESSSE-EEEEEEE--TT
T ss_pred             ---ceeeee--eccChhhcCCCCCcE--------EEEEeeEEeC----------CCCeEEEEecCCCe-EEEEEeC--CC
Confidence               211111  246788988877654        4899998764          35568898877653 4666665  47


Q ss_pred             EEEEeecCCccCccc
Q psy12875        285 IVGIQFHPEKNAYEW  299 (308)
Q Consensus       285 ~~GvQFHPE~~~~~~  299 (308)
                      +||+|||||++ ++.
T Consensus       179 v~GvQFHPE~s-~~~  192 (211)
T 4gud_A          179 YYGVQFHPERS-SKA  192 (211)
T ss_dssp             EEEESSCGGGS-HHH
T ss_pred             EEEEEccCEec-Ccc
Confidence            99999999986 443

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.91  E-value=4.9e-24  Score=210.28  Aligned_cols=199  Identities=19%  Similarity=0.260  Sum_probs=124.5

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL  121 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl  121 (308)
                      .+| .+++.++|+++|+.+++++++.+.+++.  ..++||||+|||+.+.... ......+.+++   .+.+  .++|||
T Consensus        17 s~~-~~~I~r~lre~Gv~~eiv~~~~~~~~i~--~~~~dgIIlsGGp~s~~~~-~~~~~~~~l~~---~a~~--~g~PvL   87 (556)
T 3uow_A           17 SQY-FHLIVKRLNNIKIFSETKDYGVELKDIK--DMNIKGVILSGGPYSVTEA-GSPHLKKEVFE---YFLE--KKIPIF   87 (556)
T ss_dssp             CTT-HHHHHHHHHHTTCCEEEEETTCCGGGTT--TSCEEEEEECCCSCCTTST-TCCCCCHHHHH---HHHH--TTCCEE
T ss_pred             Ccc-HHHHHHHHHHCCCeEEEEECCCCHHHHh--hcCCCEEEECCCCCccccc-CCcchhHHHHH---Hhhh--cCCCEE
Confidence            345 4688999999999999999876554332  2378999999998655432 11111122333   2334  349999


Q ss_pred             EechhhhHHHHHhcCCccccccccccccccceeeecCCC---CcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAK---RSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~---~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      |||+|||+|+.+ +||++.+... .+.....+.+.++..   .|.    .+.+....|                      
T Consensus        88 GIC~G~QlLa~~-lGG~V~~~~~-~E~G~~~l~~~~~~~~~~~p~----v~~~~~~~~----------------------  139 (556)
T 3uow_A           88 GICYGMQEIAVQ-MNGEVKKSKT-SEYGCTDVNILRNDNINNITY----CRNFGDSSS----------------------  139 (556)
T ss_dssp             EETHHHHHHHHH-TTCEEEEEEE-EEEEEEEEEECCTTGGGGCSG----GGGC---CC----------------------
T ss_pred             EECHHHHHHHHH-hCCcEecCCC-cccCCcceeeccCcccccccc----eeccccccc----------------------
Confidence            999999999999 9998854321 111111233322210   000    000000001                      


Q ss_pred             CCcccceeeecccccCCCCCCcCccCC-ChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEE
Q psy12875        199 KSCKVQQVNLNLKFLPGAKRSSLFSQV-PSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVST  277 (308)
Q Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~a  277 (308)
                            .++|..........+++|+++ +..+.        ++++|++.+..       +|++++++|+++++.   ++|
T Consensus       140 ------~mg~~~n~~~~~~~~~Lf~gl~~~~~~--------v~~~H~d~V~~-------lp~g~~vlA~s~~~~---i~a  195 (556)
T 3uow_A          140 ------AMDLYSNYKLMNETCCLFENIKSDITT--------VWMNHNDEVTK-------IPENFYLVSSSENCL---ICS  195 (556)
T ss_dssp             ------HHHHHTTSCCCC--CGGGTTCCSSEEE--------EEEEEEEEEEE-------CCTTCEEEEEETTEE---EEE
T ss_pred             ------ccccccccccccccchhhcccccCceE--------EEEEccceeec-------cCCCcEEEEEeCCCC---EEE
Confidence                  122200000002355788888 65544        49999999974       899999999998874   889


Q ss_pred             EEecCCCEEEEeecCCccCcccCC
Q psy12875        278 VEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       278 i~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++++++||+|||||++.+++|.
T Consensus       196 i~~~~~~i~GvQFHPE~~~~~~G~  219 (556)
T 3uow_A          196 IYNKEYNIYGVQYHPEVYESLDGE  219 (556)
T ss_dssp             EEETTTTEEEESSCTTSTTSTTHH
T ss_pred             EEECCCCEEEEEcCCCCCccccch
Confidence            999888999999999999987653

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.90  E-value=3.6e-24  Score=210.30  Aligned_cols=174  Identities=16%  Similarity=0.221  Sum_probs=112.8

Q ss_pred             cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEE
Q psy12875         43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLG  122 (308)
Q Consensus        43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlG  122 (308)
                      +|. +++.++|+++|+.++++|++.+.+++..  .++||||+|||+.++..     .   +.....+.+.+  .++||||
T Consensus        21 ~~~-~~i~r~lr~~Gv~~~i~p~~~~~~~i~~--~~~dgIILsGGp~sv~~-----~---~~~~~~~~~~~--~~~PvLG   87 (527)
T 3tqi_A           21 QYA-QLIARRVREIGVYCELMPCDIDEETIRD--FNPHGIILSGGPETVTL-----S---HTLRAPAFIFE--IGCPVLG   87 (527)
T ss_dssp             TTH-HHHHHHHHHHTCEEEEEETTCCSSSSTT--TCCSEEEECCCCC-----------------CCCSTTT--SSSCEEE
T ss_pred             ccH-HHHHHHHHHCCCeEEEEECCCCHHHHHh--cCCCEEEECCcCccccc-----C---CChhhHHHHHh--cCCCEEE
Confidence            453 6889999999999999998765543221  15699999999864322     1   11111223334  3489999


Q ss_pred             echhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcc
Q psy12875        123 VCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCK  202 (308)
Q Consensus       123 IC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~  202 (308)
                      ||+|||+|+.+ +||++.+...                               +.+|.-            .+       
T Consensus        88 IC~G~Qlla~~-lGG~V~~~~~-------------------------------~e~G~~------------~v-------  116 (527)
T 3tqi_A           88 ICYGMQTMAYQ-LGGKVNRTAK-------------------------------AEFGHA------------QL-------  116 (527)
T ss_dssp             ETHHHHHHHHH-SSSCBC------------------------------------CEEEE------------EE-------
T ss_pred             EChHHHHHHHH-cCCeEEeCCC-------------------------------ccccce------------EE-------
Confidence            99999999988 8887642110                               001110            11       


Q ss_pred             cceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecC
Q psy12875        203 VQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKE  282 (308)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~  282 (308)
                          ..       ..++++|++++............++++|++.|..       +|++|+++|+++++.   ++|+++++
T Consensus       117 ----~~-------~~~~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~-------lp~g~~v~A~s~~~~---i~ai~~~~  175 (527)
T 3tqi_A          117 ----RV-------LNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE-------LPPGFEATACTDNSP---LAAMADFK  175 (527)
T ss_dssp             ----EE-------SSCTTTTSSCCSBCCTTSCCEEEEEEESSSCBCS-------CCTTCEEEEEETTEE---EEEEECSS
T ss_pred             ----EE-------cCCChhhcCCccccccccccceEEEEEcccchhc-------cCCCCEEEEEeCCCc---EEEEEcCC
Confidence                11       1356788888752100000011359999999863       899999999997764   88999988


Q ss_pred             CCEEEEeecCCccCcccCC
Q psy12875        283 YPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       283 ~p~~GvQFHPE~~~~~~~~  301 (308)
                      +++||+|||||++.+++|.
T Consensus       176 ~~~~GvQFHPE~~~t~~G~  194 (527)
T 3tqi_A          176 RRFFGLQFHPEVTHTPQGH  194 (527)
T ss_dssp             SCEEEESBCSSSTTSTTHH
T ss_pred             CCEEEEEeccccccccccc
Confidence            8999999999999987763

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.90  E-value=2.7e-24  Score=210.25  Aligned_cols=165  Identities=16%  Similarity=0.234  Sum_probs=116.3

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL  121 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl  121 (308)
                      .+|. +++.++|+++|+.++++|++.+.+++...  ++||||||||+.+.... ...    .+   .+++.+  .++|||
T Consensus         9 ~~~~-~~i~r~l~~~G~~~~i~p~~~~~~~i~~~--~~dgiIlsGGp~s~~~~-~~~----~~---~~~~~~--~~~PvL   75 (503)
T 2ywb_A            9 SQYT-RLIARRLRELRAFSLILPGDAPLEEVLKH--RPQALILSGGPRSVFDP-DAP----RP---DPRLFS--SGLPLL   75 (503)
T ss_dssp             CTTH-HHHHHHHHTTTCCEEEEETTCCHHHHHTT--CCSEEEECCCSSCSSCT-TCC----CC---CGGGGC--SSCCEE
T ss_pred             CcHH-HHHHHHHHHCCCEEEEEECCCCHHHHHhc--CCCEEEECCCCchhccC-CCc----ch---HHHHHh--CCCCEE
Confidence            4564 78999999999999999987666555432  57999999998654331 000    00   122233  348999


Q ss_pred             EechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc
Q psy12875        122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC  201 (308)
Q Consensus       122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g  201 (308)
                      |||+|||+|+.+ +||++.+...                               +.+|+.            .+      
T Consensus        76 GIC~G~Qlla~~-~GG~v~~~~~-------------------------------~e~G~~------------~v------  105 (503)
T 2ywb_A           76 GICYGMQLLAQE-LGGRVERAGR-------------------------------AEYGKA------------LL------  105 (503)
T ss_dssp             EETHHHHHHHHT-TTCEEECC----------------------------------CEEEE------------EC------
T ss_pred             EECHHHHHHHHH-hCCeEeeCCC-------------------------------CccceE------------EE------
Confidence            999999999998 8887642110                               011110            11      


Q ss_pred             ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875        202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK  281 (308)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~  281 (308)
                             +  .   .. +++|++++..+.        ++++|++.|..       +|++|+++|+++++.   ++|++++
T Consensus       106 -------~--~---~~-~~l~~~~~~~~~--------v~~~H~~~v~~-------lp~g~~v~A~s~~~~---i~ai~~~  154 (503)
T 2ywb_A          106 -------T--R---HE-GPLFRGLEGEVQ--------VWMSHQDAVTA-------PPPGWRVVAETEENP---VAAIASP  154 (503)
T ss_dssp             -------S--E---EC-SGGGTTCCSCCE--------EEEECSCEEEE-------CCTTCEEEEECSSCS---CSEEECT
T ss_pred             -------E--e---cC-cHHhhcCCCccE--------EEEECCCcccc-------CCCCCEEEEEECCCC---EEEEEeC
Confidence                   0  1   12 678888875443        58999999974       899999999998876   6699998


Q ss_pred             CCCEEEEeecCCccCcccC
Q psy12875        282 EYPIVGIQFHPEKNAYEWT  300 (308)
Q Consensus       282 ~~p~~GvQFHPE~~~~~~~  300 (308)
                      ++++||+|||||++.++.|
T Consensus       155 ~~~~~gvQFHPE~~~~~~g  173 (503)
T 2ywb_A          155 DGRAYGVQFHPEVAHTPKG  173 (503)
T ss_dssp             TSSEEEESBCTTSTTSTTH
T ss_pred             CCCEEEEecCCCccccccc
Confidence            8899999999999987654

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.90  E-value=9.5e-23  Score=191.43  Aligned_cols=157  Identities=16%  Similarity=0.252  Sum_probs=111.5

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      .++.++|+++|+.++++|++.+.+++..  .++|||+|+||+.+...       .....+.++++.++  ++||||||+|
T Consensus       202 ~ni~r~L~~~G~~v~vvp~~~~~e~i~~--~~~DGliLsGGPgdp~~-------~~~~~~~Ir~~~~~--~~PILGIClG  270 (379)
T 1a9x_B          202 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGDPAP-------CDYAITAIQKFLET--DIPVFGICLG  270 (379)
T ss_dssp             HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBCSTT-------CHHHHHHHHHHTTS--CCCEEEETHH
T ss_pred             HHHHHHHHHCCCEEEEEeccCCHHHHhh--cCCCEEEEeCCCCChHH-------HHHHHHHHHHHHHc--CCCEEEECch
Confidence            5789999999999999998766544432  37999999999744322       13566777777774  4999999999


Q ss_pred             hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875        127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV  206 (308)
Q Consensus       127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~  206 (308)
                      ||+|+.+ +||++.+...         .+                      .|.                          
T Consensus       271 ~QLLa~A-~GG~v~k~~~---------gh----------------------~g~--------------------------  292 (379)
T 1a9x_B          271 HQLLALA-SGAKTVKMKF---------GH----------------------HGG--------------------------  292 (379)
T ss_dssp             HHHHHHH-TTCCEEEEEE---------EE----------------------EEE--------------------------
T ss_pred             HHHHHHH-hCcEEEeccc---------cc----------------------ccC--------------------------
Confidence            9999999 9998753211         01                      000                          


Q ss_pred             eecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEEEEEecCCC
Q psy12875        207 NLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVSTVEHKEYP  284 (308)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~ai~~~~~p  284 (308)
                                 .+++. .++ .++       ..+.++|+++|+..+     +|+++++++++ +|+.   ++|++++++|
T Consensus       293 -----------n~pv~-~~~~g~v-------~its~~H~~aV~~~~-----Lp~~~~v~a~s~~Dg~---ieai~~~~~p  345 (379)
T 1a9x_B          293 -----------NHPVK-DVEKNVV-------MITAQNHGFAVDEAT-----LPANLRVTHKSLFDGT---LQGIHRTDKP  345 (379)
T ss_dssp             -----------EEEEE-ETTTTEE-------EEEEEEEEEEECSTT-----CCTTEEEEEEETTTCC---EEEEEESSSS
T ss_pred             -----------ceeeE-ecCCCcE-------EEEecCccceEeccc-----CCCCeEEEEEeCCCCc---EEEEEECCCC
Confidence                       00000 000 011       123678999997543     78999999998 5665   7899999889


Q ss_pred             EEEEeecCCccCccc
Q psy12875        285 IVGIQFHPEKNAYEW  299 (308)
Q Consensus       285 ~~GvQFHPE~~~~~~  299 (308)
                      +||+|||||++..+.
T Consensus       346 i~gVQFHPE~~~~p~  360 (379)
T 1a9x_B          346 AFSFQGNPEASPGPH  360 (379)
T ss_dssp             EEEESSCTTCSSSCS
T ss_pred             EEEEEeCCcCCCCcc
Confidence            999999999997653

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.90  E-value=1.5e-23  Score=185.80  Aligned_cols=166  Identities=15%  Similarity=0.148  Sum_probs=113.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      .+.+++++.|.++.++++...+ .++..++++||||++||+.+.........+.  +...++++++.+.+  +||||||+
T Consensus        16 ~~~~~l~~~g~~~~~~~~~~~~-~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~PvLGICl   92 (236)
T 3l7n_A           16 AYLAWAALRGHDVSMTKVYRYE-KLPKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSE--KIIVGVCL   92 (236)
T ss_dssp             HHHHHHHHTTCEEEEEEGGGTC-CCCSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTT--CEEEEETH
T ss_pred             HHHHHHHHCCCeEEEEeeeCCC-CCCCCccccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcC--CCEEEEch
Confidence            5578899999999988875432 1222467899999999986532100111122  23567788888754  99999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+.+ +||++.+...                               |.+|+-            .|...       
T Consensus        93 G~QlL~~~-~Gg~v~~~~~-------------------------------~~~G~~------------~v~~~-------  121 (236)
T 3l7n_A           93 GAQLMGVA-YGADYLHSPK-------------------------------KEIGNY------------LISLT-------  121 (236)
T ss_dssp             HHHHHHHH-TTCCCEEEEE-------------------------------EEEEEE------------EEEEC-------
T ss_pred             HHHHHHHH-hCCEEecCCC-------------------------------ceeeeE------------EEEEc-------
Confidence            99999999 9998743211                               122221            11111       


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                              ...+++++|++++..+.        ++++|++..        .+|++++++|+++++.   ++|+++++ ++
T Consensus       122 --------~~~~~~~l~~~~~~~~~--------v~~~H~~~~--------~lp~~~~vla~s~~~~---~~a~~~~~-~v  173 (236)
T 3l7n_A          122 --------EAGKMDSYLSDFSDDLL--------VGHWHGDMP--------GLPDKAQVLAISQGCP---RQIIKFGP-KQ  173 (236)
T ss_dssp             --------TTGGGCGGGTTSCSEEE--------EEEEEEEEC--------CCCTTCEEEEECSSCS---CSEEEEET-TE
T ss_pred             --------cCcccChHHhcCCCCcE--------EEEecCCcc--------cCCChheEEEECCCCC---EEEEEECC-CE
Confidence                    11125678888876654        488999752        2899999999998887   44888875 79


Q ss_pred             EEEeecCCcc
Q psy12875        286 VGIQFHPEKN  295 (308)
Q Consensus       286 ~GvQFHPE~~  295 (308)
                      ||+|||||++
T Consensus       174 ~gvQfHPE~~  183 (236)
T 3l7n_A          174 YAFQCHLEFT  183 (236)
T ss_dssp             EEESSBSSCC
T ss_pred             EEEEeCCCCC
Confidence            9999999997

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.89  E-value=2.7e-23  Score=177.96  Aligned_cols=173  Identities=16%  Similarity=0.176  Sum_probs=109.5

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      |||+|||++....                ..++.++|+++|+++++++..   +    .++++|||++|||...     .
T Consensus         1 ~~p~Igi~~~~~~----------------~~~~~~~l~~~G~~~~~~~~~---~----~l~~~dglil~GG~~~-----~   52 (191)
T 2ywd_A            1 MRGVVGVLALQGD----------------FREHKEALKRLGIEAKEVRKK---E----HLEGLKALIVPGGEST-----T   52 (191)
T ss_dssp             --CCEEEECSSSC----------------HHHHHHHHHTTTCCCEEECSG---G----GGTTCSEEEECSSCHH-----H
T ss_pred             CCcEEEEEecCCc----------------hHHHHHHHHHCCCEEEEeCCh---h----hhccCCEEEECCCChh-----h
Confidence            4899999986321                136789999999998887632   2    4678999999999411     1


Q ss_pred             hhHH--HHHHHHHHHHHHHcCCC-ccEEEechhhhHHHHHhcCC-ccccccccccccccceeeecCCCCcchhhhHhhhc
Q psy12875         97 YADA--GRQILHLVDKINEEGVT-FPVLGVCLGFELILQVSNND-TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEG  172 (308)
Q Consensus        97 ~~~~--~~~~~e~~~~~~~~g~~-~PvlGIC~G~Qll~~~~~gg-~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~  172 (308)
                      +...  .+.+.+.++++.+  .+ +||||||+|||+|+.+ +|| +..+.          +.+.|+              
T Consensus        53 ~~~~~~~~~~~~~i~~~~~--~~~~PilGiC~G~Q~l~~~-~gg~~~~~~----------lg~~~~--------------  105 (191)
T 2ywd_A           53 IGKLAREYGIEDEVRKRVE--EGSLALFGTCAGAIWLAKE-IVGYPEQPR----------LGVLEA--------------  105 (191)
T ss_dssp             HHHHHHHTTHHHHHHHHHH--TTCCEEEEETHHHHHHEEE-ETTCTTCCC----------CCCEEE--------------
T ss_pred             hHHhhhhhhHHHHHHHHHH--CCCCeEEEECHHHHHHHHH-hCCCCCCcc----------ccccce--------------
Confidence            2222  2345677888777  45 8999999999999999 888 54221          222222              


Q ss_pred             CCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccc
Q psy12875        173 VTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDM  252 (308)
Q Consensus       173 ~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~  252 (308)
                                           ++.+..++.. ...+        ..+..+.++ .++        .++++|++.+..   
T Consensus       106 ---------------------~~~~~~~g~~-~~~~--------~~~~~~~~~-~~~--------~~~~~Hs~~v~~---  143 (191)
T 2ywd_A          106 ---------------------WVERNAFGRQ-VESF--------EEDLEVEGL-GSF--------HGVFIRAPVFRR---  143 (191)
T ss_dssp             ---------------------EEETTCSCCS-SSEE--------EEEEEETTT-EEE--------EEEEESCCEEEE---
T ss_pred             ---------------------EEEcCCcCCc-cccc--------cccccccCC-Cce--------eEEEEcccceec---
Confidence                                 1111111100 0000        001112222 222        247899998863   


Q ss_pred             cccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        253 IKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       253 ~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                          +|++++++|++ + .  +++++++++  ++|+|||||++.
T Consensus       144 ----l~~~~~~~a~~-~-~--~~~a~~~~~--~~gvQfHPE~~~  177 (191)
T 2ywd_A          144 ----LGEGVEVLARL-G-D--LPVLVRQGK--VLASSFHPELTE  177 (191)
T ss_dssp             ----ECTTCEEEEEE-T-T--EEEEEEETT--EEEESSCGGGSS
T ss_pred             ----cCCCcEEEEEE-C-C--EEEEEEECC--EEEEEeCCCCCC
Confidence                77899999998 4 3  588999874  999999999864

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.88  E-value=7.4e-23  Score=185.18  Aligned_cols=219  Identities=15%  Similarity=0.148  Sum_probs=121.6

Q ss_pred             CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhH------HHHhcCCCCEEEEcCCCCCCC
Q psy12875         19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREY------YAEILTQINGVVIPGGGTGFD   92 (308)
Q Consensus        19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~------~~~~l~~~dGlilpGG~~~~~   92 (308)
                      +.|+|...-..      ...+++++++ .++..+..+.|+.+.+++++.....      ++..++++||||+|||..+  
T Consensus         9 ~~Iaivg~y~~------~~~dny~S~~-~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~--   79 (273)
T 2w7t_A            9 VRIAFVGKYLQ------DAGDTYFSVL-QCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGN--   79 (273)
T ss_dssp             EEEEEEECCHH------HHTTTTHHHH-HHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTT--
T ss_pred             CEEEEEeCCCc------CCchHHHHHH-HHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCC--
Confidence            78999854310      0123334433 3445555566778888887643211      3345778999999998522  


Q ss_pred             CCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccc--cccccccccccceeeecCCCCcchhhhHhh
Q psy12875         93 HPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQVNLNLKFLPGAKRSSLFSQINE  170 (308)
Q Consensus        93 ~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~  170 (308)
                      +   .   ....+++++.+.+.+  +||||||+|||+|+.+ +||++.  ++.. ...+        ++..         
T Consensus        80 ~---~---~~~~~~~i~~~~~~~--~PilGIC~G~Qll~~a-~Gg~v~~~~~~~-s~E~--------~~~~---------  132 (273)
T 2w7t_A           80 R---G---VDGKCAAAQVARMNN--IPYFGVXLGMQVAVIE-LSRNVVGWSDAN-SEEF--------NKES---------  132 (273)
T ss_dssp             T---T---HHHHHHHHHHHHHHT--CCEEEETHHHHHHHHH-HHHHTTCCTTCE-ETTT--------CTTC---------
T ss_pred             c---C---chhHHHHHHHHHHCC--CcEEEECcCHHHHHHH-HhCccccccCCc-hhhc--------cccc---------
Confidence            2   1   124566677777644  9999999999999999 999873  1111 0000        0000         


Q ss_pred             hcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceee--ccceeee
Q psy12875        171 EGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHN--NHIWCIT  248 (308)
Q Consensus       171 ~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~--~H~~~v~  248 (308)
                         ..|.+|+- -|         .+...  +....++++..... ..++++++.++..        ..+++  .|++.++
T Consensus       133 ---~~~~l~~~-~~---------~~~~~--~~~~~~g~~~v~~~-~~~s~l~~~~~~~--------~~v~~~H~Hsy~v~  188 (273)
T 2w7t_A          133 ---THQVVRIM-DC---------DRNKM--GANMHLGACDVYIV-EKSSIMAKIYSKS--------NIVVERHRHRYEVN  188 (273)
T ss_dssp             ---SCEEEECC-GG---------GBCSS--CBCCEEEEEEEEEC-CTTSHHHHHTTTC--------SEEEEEEEECCEEC
T ss_pred             ---CCCceeec-cc---------ccccc--CCcccccceEEEEe-cCCcHHHHHhCCC--------ceEEeecccccccC
Confidence               01111110 00         00000  00001222211100 1244454433322        22344  6789998


Q ss_pred             eccccccCC-CCCeEEEEEecCCC--ceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875        249 RQDMIKYGL-TETWNILTLSKYKS--WEFVSTVEHKEYPIV-GIQFHPEKNAYEW  299 (308)
Q Consensus       249 ~~~~~~~~l-~~~~~via~s~~~~--~~~v~ai~~~~~p~~-GvQFHPE~~~~~~  299 (308)
                      ++.+.  .+ |++++++|+++++.  ..+++|++++++|++ |+|||||++.++.
T Consensus       189 ~~~v~--~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~  241 (273)
T 2w7t_A          189 TAYFE--DLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPM  241 (273)
T ss_dssp             GGGHH--HHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTT
T ss_pred             HHHHH--hhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCC
Confidence            65432  26 78999999997720  015899999998865 9999999998764

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.87  E-value=1.5e-22  Score=203.76  Aligned_cols=161  Identities=17%  Similarity=0.258  Sum_probs=109.5

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      +.+.+.|+++|+.++++|++.+.+++..  .++|||||+||+.+...     .....+   .++..+  .++||||||+|
T Consensus        43 ~liar~lre~Gv~~~ivp~~~~~e~i~~--~~~dGIILsGGp~s~~~-----~~~~~~---~~~i~~--~g~PvLGIC~G  110 (697)
T 2vxo_A           43 KVIDRRVRELFVQSEIFPLETPAFAIKE--QGFRAIIISGGPNSVYA-----EDAPWF---DPAIFT--IGKPVLGICYG  110 (697)
T ss_dssp             HHHHHHHHHTTCCEEEEETTCCHHHHHH--HTCSEEEEEECC------------CCCC---CGGGTT--SSCCEEEEEHH
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHhh--cCCCEEEECCCCCcccC-----ccchhH---HHHHHh--CCCCEEEECHH
Confidence            3567999999999999999877655543  47999999999864321     100000   112233  34899999999


Q ss_pred             hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875        127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV  206 (308)
Q Consensus       127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~  206 (308)
                      ||+|+.+ +||++.+...                               +                      .+|. ..+
T Consensus       111 ~QlLa~~-lGG~v~~~~~-------------------------------~----------------------e~G~-~~v  135 (697)
T 2vxo_A          111 MQMMNKV-FGGTVHKKSV-------------------------------R----------------------EDGV-FNI  135 (697)
T ss_dssp             HHHHHHH-TTCCBCC------------------------------------------------------------C-EEE
T ss_pred             HHHHHHH-hCCeEeecCC-------------------------------C----------------------ccce-EEE
Confidence            9999988 8887642100                               0                      0010 011


Q ss_pred             eecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEE
Q psy12875        207 NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIV  286 (308)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~  286 (308)
                      .+       ..+++||++++..+.        ++++|++.|..       +|++|+++|++++    .++|+++.++++|
T Consensus       136 ~~-------~~~~~Lf~~l~~~~~--------v~~~H~~~V~~-------lp~g~~vlA~s~~----~i~ai~~~~~~i~  189 (697)
T 2vxo_A          136 SV-------DNTCSLFRGLQKEEV--------VLLTHGDSVDK-------VADGFKVVARSGN----IVAGIANESKKLY  189 (697)
T ss_dssp             EE-------CTTSGGGTTCCSEEE--------ECCCSSCCBSS-------CCTTCEEEEEETT----EEEEEEETTTTEE
T ss_pred             Ee-------cCCChhhhcCCccCc--------ceeecccceec-------CCCCeEEEEEeCC----ceEEEEeCCCCEE
Confidence            11       135678998876543        48899999863       8999999999843    4999999999999


Q ss_pred             EEeecCCccCcccC
Q psy12875        287 GIQFHPEKNAYEWT  300 (308)
Q Consensus       287 GvQFHPE~~~~~~~  300 (308)
                      |+|||||+..++.|
T Consensus       190 GvQFHPE~~~t~~g  203 (697)
T 2vxo_A          190 GAQFHPEVGLTENG  203 (697)
T ss_dssp             EESSCTTSSSSTTH
T ss_pred             EEEecccCCCCccc
Confidence            99999999987665

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.87  E-value=4.1e-22  Score=199.03  Aligned_cols=171  Identities=14%  Similarity=0.121  Sum_probs=115.8

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF  118 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~  118 (308)
                      +.+++| ..++++++++.|+.+.+++++.+.     .+.++||||++||+.+....  ...+...+.++++++.+.+  +
T Consensus       453 D~gdsf-~~~l~~~l~~~G~~v~Vv~~d~~~-----~~~~~DgIIlsGGPg~p~d~--~~p~i~~~~~lI~~a~~~~--i  522 (645)
T 3r75_A          453 DAEDHF-TAMIAQQLSSLGLATEVCGVHDAV-----DLARYDVVVMGPGPGDPSDA--GDPRIARLYAWLRHLIDEG--K  522 (645)
T ss_dssp             ESSCTH-HHHHHHHHHHTTCEEEEEETTCCC-----CGGGCSEEEECCCSSCTTCT--TSHHHHHHHHHHHHHHHHT--C
T ss_pred             ECCccH-HHHHHHHHHHCCCEEEEEECCCcc-----cccCCCEEEECCCCCChhhh--hhhhHHHHHHHHHHHHHCC--C
Confidence            345566 468999999999999999987642     24679999999987554431  1123445667777777744  9


Q ss_pred             cEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        119 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       119 PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ||||||+|||+|+.+ +||++.+...                               |..|.                  
T Consensus       523 PiLGIClG~QlLa~a-lGG~V~~~~~-------------------------------~~~G~------------------  552 (645)
T 3r75_A          523 PFMAVCLSHQILNAI-LGIPLVRREV-------------------------------PNQGI------------------  552 (645)
T ss_dssp             CEEEETHHHHHHHHH-TTCCEEEEEE-------------------------------EEEEE------------------
T ss_pred             CEEEECHHHHHHHHH-hCCEEEcCCC-------------------------------ccccc------------------
Confidence            999999999999999 9998753211                               00110                  


Q ss_pred             CCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEE
Q psy12875        199 KSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTV  278 (308)
Q Consensus       199 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai  278 (308)
                          ...+.+        .+++++.+++..+.        ++++|...+.       .+|++++++|+++++.   |+++
T Consensus       553 ----~~~i~~--------~~~~l~~~~~~~~~--------v~~~h~~~~~-------~lp~g~~v~A~s~dg~---i~Ai  602 (645)
T 3r75_A          553 ----QVEIDL--------FGQRERVGFYNTYV--------AQTVRDEMDV-------DGVGTVAISRDPRTGE---VHAL  602 (645)
T ss_dssp             ----EEEEEE--------TTEEEEEEEEEEEE--------EBCSCSEEEE-------TTTEEEEEEECTTTCB---EEEE
T ss_pred             ----ceEEee--------ecCcceecCCCcEE--------EEEehhhccc-------cCCCCeEEEEEcCCCc---EEEE
Confidence                111111        12334444333322        2445655443       2889999999988875   8899


Q ss_pred             EecCCCEEEEeecCCccCcccCC
Q psy12875        279 EHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       279 ~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++++  +||+|||||++.+++|.
T Consensus       603 ~~~~--~~GVQFHPE~~~t~~G~  623 (645)
T 3r75_A          603 RGPT--FSSMQFHAESVLTVDGP  623 (645)
T ss_dssp             EETT--EEEESSBTTSTTCTTHH
T ss_pred             EcCC--EEEEEeCCeecCCcchH
Confidence            9886  79999999999987753

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.86  E-value=5e-22  Score=169.56  Aligned_cols=154  Identities=16%  Similarity=0.263  Sum_probs=97.8

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHH--HHHHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADA--GRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      ++.++|+++|+++++++.   ++    .++++||||+|||+.+     .|.+.  .+++.+.++   +  .++||||||+
T Consensus        14 ~~~~~l~~~G~~~~~~~~---~~----~~~~~dglil~GG~~~-----~~~~~~~~~~~~~~i~---~--~~~PilGIC~   76 (186)
T 2ywj_A           14 EHEEAIKKAGYEAKKVKR---VE----DLEGIDALIIPGGEST-----AIGKLMKKYGLLEKIK---N--SNLPILGTCA   76 (186)
T ss_dssp             HHHHHHHHTTSEEEEECS---GG----GGTTCSEEEECCSCHH-----HHHHHHHHTTHHHHHH---T--CCCCEEEETH
T ss_pred             HHHHHHHHCCCEEEEECC---hH----HhccCCEEEECCCCch-----hhhhhhhccCHHHHHH---h--cCCcEEEECH
Confidence            567999999999888763   22    4678999999999621     23322  223445444   3  4599999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+.+ +||+. +.          +.+.++                                   ++.+..++.. .
T Consensus        77 G~Qll~~~-~gg~~-~~----------lg~~~~-----------------------------------~~~~~~~~~~-~  108 (186)
T 2ywj_A           77 GMVLLSKG-TGINQ-IL----------LELMDI-----------------------------------TVKRNAYGRQ-V  108 (186)
T ss_dssp             HHHHHSSC-CSSCC-CC----------CCCSSE-----------------------------------EEETTTTCSS-S
T ss_pred             HHHHHHHH-hCCCc-Cc----------cCCCce-----------------------------------eEEeccCCCc-c
Confidence            99999999 99873 21          111111                                   1110000000 0


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCC-CCCeEEEEEecCCCceEEEEEEecCCC
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGL-TETWNILTLSKYKSWEFVSTVEHKEYP  284 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l-~~~~~via~s~~~~~~~v~ai~~~~~p  284 (308)
                      ..+        ..+.++.++ .++        .++++|++++..       + |++++++|++ ++   +++|++++  +
T Consensus       109 ~~~--------~~~~~~~~~-~~~--------~~~~~H~~~v~~-------l~~~~~~v~a~s-d~---~~~a~~~~--~  158 (186)
T 2ywj_A          109 DSF--------EKEIEFKDL-GKV--------YGVFIRAPVVDK-------ILSDDVEVIARD-GD---KIVGVKQG--K  158 (186)
T ss_dssp             CCE--------EEEEEETTT-EEE--------EEEESSCCEEEE-------ECCTTCEEEEEE-TT---EEEEEEET--T
T ss_pred             cce--------ecccccccC-CcE--------EEEEEecceeee-------cCCCCeEEEEEE-CC---EEEEEeeC--C
Confidence            000        011234433 222        248899999863       7 8999999998 43   48899975  5


Q ss_pred             EEEEeecCCccC
Q psy12875        285 IVGIQFHPEKNA  296 (308)
Q Consensus       285 ~~GvQFHPE~~~  296 (308)
                      ++|+|||||++.
T Consensus       159 ~~gvQfHPE~~~  170 (186)
T 2ywj_A          159 YMALSFHPELSE  170 (186)
T ss_dssp             EEEESSCGGGST
T ss_pred             EEEEECCCCcCC
Confidence            999999999875

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.84  E-value=3.9e-21  Score=175.25  Aligned_cols=193  Identities=16%  Similarity=0.190  Sum_probs=112.6

Q ss_pred             HHHHHHHHcCC----eEEEEEcCCCh----------hHHHH---hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAGA----RVVPILIGQDR----------EYYAE---ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDK  110 (308)
Q Consensus        48 ~~~~~l~~aG~----~~~~i~~~~~~----------~~~~~---~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~  110 (308)
                      ++.++|+++|+    .+.+++++.+.          +++++   .+.++||||+|||..+  +   .   .....+.+++
T Consensus        43 si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~--~---~---~~~~~~~i~~  114 (289)
T 2v4u_A           43 SVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGI--R---G---TLGKLQAISW  114 (289)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSS--T---T---HHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCc--h---h---HHHHHHHHHH
Confidence            77889988764    45666654321          11111   3678999999999632  2   1   1456777888


Q ss_pred             HHHcCCCccEEEechhhhHHHHHhcCCccc--cccccccc---c-ccceeeecCCCCcchhhhHhhhcCCCCeeeeehhH
Q psy12875        111 INEEGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQ---V-NLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGF  184 (308)
Q Consensus       111 ~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~---~-~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~  184 (308)
                      +.+.  ++||||||+|||+|+.+ +||++.  ++....+-   . .+.+.+.|+....                      
T Consensus       115 ~~~~--~~PilGIC~G~Q~l~~a-~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~~----------------------  169 (289)
T 2v4u_A          115 ARTK--KIPFLGVXLGMQLAVIE-FARNCLNLKDADSTEFRPNAPVPLVIDMPEHNPG----------------------  169 (289)
T ss_dssp             HHHT--TCCEEEETHHHHHHHHH-HHHHHSCCTTEEESTTCTTCSEEEEEECCBCCTT----------------------
T ss_pred             HHHc--CCcEEEECccHHHHHHH-HhccccccccCcccccCccccccceecchhhccc----------------------
Confidence            8774  49999999999999999 999873  22110000   0 0001111110000                      


Q ss_pred             HHHHHHhCCcccccCCcccceeee-cccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCC-CCeE
Q psy12875        185 ELILQVSNNDTDFRKSCKVQQVNL-NLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLT-ETWN  262 (308)
Q Consensus       185 Qll~~~~G~~v~~~~~g~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~-~~~~  262 (308)
                                    +.+....++. .+...  ..++.+++.++.+..+      ..++.|++.|+++.+.  .+| ++++
T Consensus       170 --------------~~~~~~~~g~~~v~~~--~~~s~l~~~~~~~~~v------~~~H~H~y~vn~~~v~--~l~~~g~~  225 (289)
T 2v4u_A          170 --------------NLGGTMRLGIRRTVFK--TENSILRKLYGDVPFI------EERHRHRFEVNPNLIK--QFEQNDLS  225 (289)
T ss_dssp             --------------CSSCBCEEEEEEEEES--CSCCHHHHHTTSCSEE------EEEEEECEEECGGGSG--GGTTSSEE
T ss_pred             --------------ccCCccccceEEEEEe--cCCCHHHHhcCCCceE------EEecccccccCHHHHH--hcccCCeE
Confidence                          0000000111 11110  0244454443321111      1245678888876653  278 9999


Q ss_pred             EEEEecCCCceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875        263 ILTLSKYKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEW  299 (308)
Q Consensus       263 via~s~~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~  299 (308)
                      ++|+++|+.  +|+|++++++|++ |+|||||+..++.
T Consensus       226 v~A~s~dg~--~ieaie~~~~p~~lGvQfHPE~~~~~~  261 (289)
T 2v4u_A          226 FVGQDVDGD--RMEIIELANHPYFVGVQFHPEFSSRPM  261 (289)
T ss_dssp             EEEEETTSC--SEEEEEESSSSCEEEESSBGGGGCBTT
T ss_pred             EEEEcCCCC--eEEEEEcCCCCeEEEEECCCCCCCCCC
Confidence            999998874  3779999988876 9999999987654

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.84  E-value=1.6e-20  Score=163.20  Aligned_cols=185  Identities=16%  Similarity=0.183  Sum_probs=113.3

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY   97 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~   97 (308)
                      .+.|+|+..+...              ...++.++|+++|+++.+++...       .++++|+||+|||....+.. .+
T Consensus         2 ~~~i~il~~~~~~--------------~~~~~~~~l~~~g~~~~~~~~~~-------~~~~~d~lil~Gg~~~~~~~-~~   59 (213)
T 3d54_D            2 KPRACVVVYPGSN--------------CDRDAYHALEINGFEPSYVGLDD-------KLDDYELIILPGGFSYGDYL-RP   59 (213)
T ss_dssp             CCEEEEECCTTEE--------------EHHHHHHHHHTTTCEEEEECTTC-------CCSSCSEEEECEECGGGGCS-ST
T ss_pred             CcEEEEEEcCCCC--------------ccHHHHHHHHHCCCEEEEEecCC-------CcccCCEEEECCCCchhhhh-cc
Confidence            4678888654321              11356899999999998887532       46789999999997322110 11


Q ss_pred             hHH--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHHh-cCCccccccccccccccceeeecCCCCcchhhhHhhhcCC
Q psy12875         98 ADA--GRQILHLVDKINEEGVTFPVLGVCLGFELILQVS-NNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVT  174 (308)
Q Consensus        98 ~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~-~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~  174 (308)
                      ...  .+.+.++++++.+++  +||+|||+|+|+|+.+. ++|++.+..             .++               
T Consensus        60 ~~~~~~~~~~~~l~~~~~~~--~pilgIC~G~qlLa~aGll~g~v~~~~-------------~~~---------------  109 (213)
T 3d54_D           60 GAVAAREKIAFEIAKAAERG--KLIMGICNGFQILIEMGLLKGALLQNS-------------SGK---------------  109 (213)
T ss_dssp             THHHHTSTTHHHHHHHHHHT--CEEEECHHHHHHHHHHTSSCSEEECCS-------------SSS---------------
T ss_pred             ccccccHHHHHHHHHHHHCC--CEEEEECHHHHHHHHcCCCCCCeecCC-------------CCc---------------
Confidence            111  235677788887754  99999999999999872 344331100             000               


Q ss_pred             CCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeecc---ceeeeecc
Q psy12875        175 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNH---IWCITRQD  251 (308)
Q Consensus       175 ~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H---~~~v~~~~  251 (308)
                       ...|+                       ..+.+    .  .+++++++.++.....      .++.+|   ++.+.   
T Consensus       110 -~~~g~-----------------------~~v~~----~--~~~~~l~~~~~~~~~~------~~~~~H~~~s~~~~---  150 (213)
T 3d54_D          110 -FICKW-----------------------VDLIV----E--NNDTPFTNAFEKGEKI------RIPIAHGFGRYVKI---  150 (213)
T ss_dssp             -CBCCE-----------------------EEEEE----C--CCSSTTSTTSCTTCEE------EEECCBSSCEEECS---
T ss_pred             -eEeee-----------------------EEEEe----C--CCCCceeeccCCCCEE------EEEeecCceEEEec---
Confidence             00011                       11111    0  1357788877642110      124478   55542   


Q ss_pred             ccccCCCCCeEEEEEecC--CCceEEEEEEecCCCEEEEeecCCccCccc
Q psy12875        252 MIKYGLTETWNILTLSKY--KSWEFVSTVEHKEYPIVGIQFHPEKNAYEW  299 (308)
Q Consensus       252 ~~~~~l~~~~~via~s~~--~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~  299 (308)
                            |+++.++|++++  +....++|+++++.+++|+|||||++...|
T Consensus       151 ------~~~~~~~a~~~~~ng~~~~i~a~~~~~~~~~gvQfHPE~~~~~~  194 (213)
T 3d54_D          151 ------DDVNVVLRYVKDVNGSDERIAGVLNESGNVFGLMPHPERAVEEL  194 (213)
T ss_dssp             ------SCCEEEEEESSCSSCCGGGEEEEECSSSCEEEECSCSTTTTSTT
T ss_pred             ------CCCcEEEEEcCCCCCCccceeEEEcCCCCEEEEeCCHHHhcCHh
Confidence                  367889999865  310138899987778999999999998654

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.84  E-value=3.8e-21  Score=166.08  Aligned_cols=159  Identities=21%  Similarity=0.314  Sum_probs=97.7

Q ss_pred             HHHHHHHHHcC-----CeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCcc
Q psy12875         47 ASYVKNIEAAG-----ARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFP  119 (308)
Q Consensus        47 ~~~~~~l~~aG-----~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~P  119 (308)
                      .++.++|+++|     +.+.+++..   +    . .++||||+|||+. ..   ....+.+  .+.++++++.+++  +|
T Consensus        14 ~s~~~~l~~~G~~~~~~~~~~~~~~---~----~-~~~dglilpG~g~-~~---~~~~~l~~~~~~~~i~~~~~~~--~P   79 (201)
T 1gpw_B           14 MNLYRGVKRASENFEDVSIELVESP---R----N-DLYDLLFIPGVGH-FG---EGMRRLRENDLIDFVRKHVEDE--RY   79 (201)
T ss_dssp             HHHHHHHHHHSTTBSSCEEEEECSC---C----S-SCCSEEEECCCSC-SH---HHHHHHHHTTCHHHHHHHHHTT--CE
T ss_pred             HHHHHHHHHcCCCCCceEEEEECCC---c----c-cCCCEEEECCCCc-HH---HHHHHHHhhCHHHHHHHHHHcC--Ce
Confidence            46778999999     888877642   1    2 6799999999752 11   1111222  2567788887744  99


Q ss_pred             EEEechhhhHHHHHhcC--CccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        120 VLGVCLGFELILQVSNN--DTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       120 vlGIC~G~Qll~~~~~g--g~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      |||||+|||+|+.+ +|  |+ .+.          +.+.+|                                   ++.+
T Consensus        80 ilGIC~G~Qll~~~-~g~~G~-~~~----------l~~~~g-----------------------------------~v~~  112 (201)
T 1gpw_B           80 VVGVCLGMQLLFEE-SEEAPG-VKG----------LSLIEG-----------------------------------NVVK  112 (201)
T ss_dssp             EEEETHHHHTTSSE-ETTEEE-EEC----------CCSSSE-----------------------------------EEEE
T ss_pred             EEEEChhHHHHHHh-hccCCC-CCC----------cceeee-----------------------------------EEEE
Confidence            99999999999998 76  33 111          111111                                   2211


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVS  276 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~  276 (308)
                      ...++...++++          +++...+ ..+        .++++|++.+.+       +  +++++|++++++. .++
T Consensus       113 ~~~~~~~~~g~~----------~l~~~~~~~~~--------~v~~~H~~~v~~-------~--~~~vla~s~~~g~-~~~  164 (201)
T 1gpw_B          113 LRSRRLPHMGWN----------EVIFKDTFPNG--------YYYFVHTYRAVC-------E--EEHVLGTTEYDGE-IFP  164 (201)
T ss_dssp             CCCSSCSEEEEE----------EEEESSSSCCE--------EEEEEESEEEEE-------C--GGGEEEEEEETTE-EEE
T ss_pred             cCCCCCCcccce----------eeEeccCCCCC--------eEEEECcceecc-------C--CCEEEEEEccCCc-eEE
Confidence            110011111211          1221111 112        258999999974       3  6789999876221 377


Q ss_pred             EEEecCCCEEEEeecCCcc
Q psy12875        277 TVEHKEYPIVGIQFHPEKN  295 (308)
Q Consensus       277 ai~~~~~p~~GvQFHPE~~  295 (308)
                      |+++++ +++|+|||||++
T Consensus       165 a~~~~~-~i~gvQfHPE~~  182 (201)
T 1gpw_B          165 SAVRKG-RILGFQFHPEKS  182 (201)
T ss_dssp             EEEEET-TEEEESSCGGGS
T ss_pred             EEEECC-CEEEEECCCccc
Confidence            998876 899999999998

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.84  E-value=2.3e-21  Score=169.87  Aligned_cols=175  Identities=19%  Similarity=0.277  Sum_probs=109.8

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPN   95 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~   95 (308)
                      +.++.|+|+....              +|.  ++.++|+++|+++++++..   +    .++++||||+|||...     
T Consensus        21 ~~~~~I~il~~~~--------------~~~--~~~~~l~~~G~~~~~~~~~---~----~l~~~Dglil~GG~~~-----   72 (219)
T 1q7r_A           21 QSNMKIGVLGLQG--------------AVR--EHVRAIEACGAEAVIVKKS---E----QLEGLDGLVLPGGEST-----   72 (219)
T ss_dssp             CCCCEEEEESCGG--------------GCH--HHHHHHHHTTCEEEEECSG---G----GGTTCSEEEECCCCHH-----
T ss_pred             CCCCEEEEEeCCC--------------CcH--HHHHHHHHCCCEEEEECCH---H----HHhhCCEEEECCCChH-----
Confidence            4468999994421              222  3568999999998887642   2    3678999999999621     


Q ss_pred             chhHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcC
Q psy12875         96 GYADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGV  173 (308)
Q Consensus        96 ~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~  173 (308)
                      .+....  ..+.++++++.+++  +||||||+|||+|+.+ +||+..+.          +.+.|+.....          
T Consensus        73 ~~~~~~~~~~~~~~i~~~~~~~--~PilGIC~G~QlL~~~-~gg~~~~~----------lg~~~~~~~~~----------  129 (219)
T 1q7r_A           73 TMRRLIDRYGLMEPLKQFAAAG--KPMFGTCAGLILLAKR-IVGYDEPH----------LGLMDITVERN----------  129 (219)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT--CCEEEETTHHHHHEEE-EESSCCCC----------CCCEEEEEECH----------
T ss_pred             HHHHHhhhhHHHHHHHHHHHcC--CeEEEECHHHHHHHHH-hCCCCcCC----------cCccceEEEec----------
Confidence            132222  23467788888754  9999999999999999 88875321          22222110000          


Q ss_pred             CCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeecccc
Q psy12875        174 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMI  253 (308)
Q Consensus       174 ~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~  253 (308)
                                      ..|..+.          .+        ..+..+.+++.++.        ++++|++.+..    
T Consensus       130 ----------------~~g~~~~----------~~--------~~~~~~~g~g~~~~--------~~~~h~~~v~~----  163 (219)
T 1q7r_A          130 ----------------SFGRQRE----------SF--------EAELSIKGVGDGFV--------GVFIRAPHIVE----  163 (219)
T ss_dssp             ----------------HHHCCCC----------CE--------EEEEEETTTEEEEE--------EEESSCCEEEE----
T ss_pred             ----------------CCCcccc----------ce--------ecCcccCCCCCceE--------EEEEecceeec----
Confidence                            0000000          00        00111233322332        37789988864    


Q ss_pred             ccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        254 KYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       254 ~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                         +|++++++|++ ++   .++|++++  +++|+|||||+..
T Consensus       164 ---l~~~~~v~a~s-dg---~~ea~~~~--~i~GvQfHPE~~~  197 (219)
T 1q7r_A          164 ---AGDGVDVLATY-ND---RIVAARQG--QFLGCSFHPELTD  197 (219)
T ss_dssp             ---ECTTCEEEEEE-TT---EEEEEEET--TEEEESSCGGGSS
T ss_pred             ---cCCCcEEEEEc-CC---EEEEEEEC--CEEEEEECcccCC
Confidence               78899999998 54   47899985  6999999999974

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.83  E-value=7.5e-21  Score=164.21  Aligned_cols=74  Identities=28%  Similarity=0.452  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEec
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVC  124 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC  124 (308)
                      .++.++|+++|+++++++..   +    .++++||||+|||+. ..+   ...+.  +.+.++++++.+++  +||||||
T Consensus        16 ~~~~~~l~~~G~~~~~~~~~---~----~l~~~d~lil~G~g~-~~~---~~~~l~~~~~~~~i~~~~~~~--~PilGIC   82 (200)
T 1ka9_H           16 RSAAKALEAAGFSVAVAQDP---K----AHEEADLLVLPGQGH-FGQ---VMRAFQESGFVERVRRHLERG--LPFLGIC   82 (200)
T ss_dssp             HHHHHHHHHTTCEEEEESST---T----SCSSCSEEEECCCSC-HHH---HHHTTSSSCTHHHHHHHHHTT--CCEEECT
T ss_pred             HHHHHHHHHCCCeEEEecCh---H----HcccCCEEEECCCCc-HHH---HHHHHHhcCHHHHHHHHHHcC--CeEEEEc
Confidence            35789999999999887532   1    467899999999652 111   11111  13567778877744  9999999


Q ss_pred             hhhhHHHHH
Q psy12875        125 LGFELILQV  133 (308)
Q Consensus       125 ~G~Qll~~~  133 (308)
                      +|||+|+.+
T Consensus        83 ~G~Qll~~~   91 (200)
T 1ka9_H           83 VGMQVLYEG   91 (200)
T ss_dssp             HHHHTTSSE
T ss_pred             HHHHHHHHh
Confidence            999999998

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.82  E-value=1.8e-20  Score=161.25  Aligned_cols=160  Identities=18%  Similarity=0.272  Sum_probs=98.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH--HHHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG--RQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      ++.++|+++|++++.++.   .+    .++++|||++|||...     .+.+..  ..+.+.++++.+++  +|++|||+
T Consensus        15 ~~~~~l~~~g~~~~~~~~---~~----~l~~~d~iil~GG~~~-----~~~~~~~~~~~~~~i~~~~~~~--~pilgIC~   80 (196)
T 2nv0_A           15 EHIHAIEACGAAGLVVKR---PE----QLNEVDGLILPGGEST-----TMRRLIDTYQFMEPLREFAAQG--KPMFGTCA   80 (196)
T ss_dssp             HHHHHHHHTTCEEEEECS---GG----GGGGCSEEEECCSCHH-----HHHHHHHHTTCHHHHHHHHHTT--CCEEEETH
T ss_pred             HHHHHHHHCCCEEEEeCC---hH----HHhhCCEEEECCCChh-----hHHHHhhhHHHHHHHHHHHHCC--CcEEEECH
Confidence            346899999999887753   22    3568999999999621     132222  23467778887754  99999999


Q ss_pred             hhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccce
Q psy12875        126 GFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQ  205 (308)
Q Consensus       126 G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~  205 (308)
                      |||+|+.+ +||+..+.          +++.|+.                                   +.+...+....
T Consensus        81 G~q~l~~~-~gg~~~~~----------lg~~~~~-----------------------------------~~~~~~g~~~~  114 (196)
T 2nv0_A           81 GLIILAKE-IAGSDNPH----------LGLLNVV-----------------------------------VERNSFGRQVD  114 (196)
T ss_dssp             HHHHHSBC-CC----CC----------CCCSCEE-----------------------------------EECCCSCTTTS
T ss_pred             HHHHHHHH-hcCCCCCc----------ccCCcee-----------------------------------EeccCCCcccc
Confidence            99999999 99875321          2222211                                   11100000000


Q ss_pred             eeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCE
Q psy12875        206 VNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~  285 (308)
                       .+        ..+..+.+++.++.        ++++|++.+..       +|++++++|++ ++   .+++++++  ++
T Consensus       115 -~~--------~~~~~~~~~g~~~~--------~~~~h~~~v~~-------~~~~~~v~a~~-d~---~~~a~~~~--~~  164 (196)
T 2nv0_A          115 -SF--------EADLTIKGLDEPFT--------GVFIRAPHILE-------AGENVEVLSEH-NG---RIVAAKQG--QF  164 (196)
T ss_dssp             -EE--------EEEECCTTCSSCEE--------EEEESCCEEEE-------ECTTCEEEEEE-TT---EEEEEEET--TE
T ss_pred             -cc--------cCCcccccCCCceE--------EEEEecceecc-------cCCCcEEEEEE-CC---EEEEEEEC--CE
Confidence             00        01112333333332        47789988863       78899999998 43   37799875  69


Q ss_pred             EEEeecCCccCc
Q psy12875        286 VGIQFHPEKNAY  297 (308)
Q Consensus       286 ~GvQFHPE~~~~  297 (308)
                      +|+|||||++..
T Consensus       165 ~gvQfHPE~~~~  176 (196)
T 2nv0_A          165 LGCSFHPELTED  176 (196)
T ss_dssp             EEESSCTTSSSC
T ss_pred             EEEEECCccCCc
Confidence            999999998754

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=3.1e-20  Score=161.36  Aligned_cols=178  Identities=16%  Similarity=0.197  Sum_probs=105.6

Q ss_pred             ccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCC
Q psy12875         14 TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDH   93 (308)
Q Consensus        14 ~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~   93 (308)
                      ...++..|+|+..   .         .  .|  .++.++|+++|+++++++.   .+    .+.++|||++|||..    
T Consensus        16 ~~~~~~~I~ii~~---~---------~--~~--~~~~~~l~~~g~~~~~~~~---~~----~l~~~d~iil~GG~~----   68 (208)
T 2iss_D           16 PRGSHMKIGVLGV---Q---------G--DV--REHVEALHKLGVETLIVKL---PE----QLDMVDGLILPGGES----   68 (208)
T ss_dssp             ----CCEEEEECS---S---------S--CH--HHHHHHHHHTTCEEEEECS---GG----GGGGCSEEEECSSCH----
T ss_pred             CCCCCcEEEEEEC---C---------C--ch--HHHHHHHHHCCCEEEEeCC---hH----HHhhCCEEEECCCcH----
Confidence            4445678999832   1         0  12  3567889999999887753   22    256899999999841    


Q ss_pred             CCchhHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhh
Q psy12875         94 PNGYADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEE  171 (308)
Q Consensus        94 ~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~  171 (308)
                      . .+.+..  +.+.+.++++.+++  +||||||+|||+|+.+ +||+..+          .+++.|+.            
T Consensus        69 ~-~~~~~~~~~~~~~~i~~~~~~g--~PilGIC~G~QlL~~~-~gg~~~~----------~lg~~~~~------------  122 (208)
T 2iss_D           69 T-TMIRILKEMDMDEKLVERINNG--LPVFATCAGVILLAKR-IKNYSQE----------KLGVLDIT------------  122 (208)
T ss_dssp             H-HHHHHHHHTTCHHHHHHHHHTT--CCEEEETHHHHHHEEE-EC---CC----------CCCCEEEE------------
T ss_pred             H-HHHhhhhhhhHHHHHHHHHHCC--CeEEEECHHHHHHHHH-cCCCCCC----------CccccceE------------
Confidence            1 233221  23567778887744  9999999999999999 8886421          13333221            


Q ss_pred             cCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCC-hhHHHhhccCCceeeccceeeeec
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVP-SKYIKKFYQKPLTHNNHIWCITRQ  250 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~v~~~H~~~v~~~  250 (308)
                                             +.+.+.+.... ..        .....+.+++ .++        .++++|++.+.. 
T Consensus       123 -----------------------v~~~~~g~~~~-~~--------~~~~~~~~~~~~~~--------~~~~~h~~~v~~-  161 (208)
T 2iss_D          123 -----------------------VERNAYGRQVE-SF--------ETFVEIPAVGKDPF--------RAIFIRAPRIVE-  161 (208)
T ss_dssp             -----------------------EETTTTCSGGG-CE--------EEEECCGGGCSSCE--------EEEESSCCEEEE-
T ss_pred             -----------------------EEecCCCcccc-cc--------cCCcccccCCCCce--------EEEEEeCccccc-
Confidence                                   11110000000 00        0011222222 122        247789888764 


Q ss_pred             cccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        251 DMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       251 ~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                            +|++++++|++ ++   .+++++.+  +++|+|||||++..
T Consensus       162 ------~~~~~~v~a~~-d~---~~~a~~~~--~i~GvQfHPE~~~~  196 (208)
T 2iss_D          162 ------TGKNVEILATY-DY---DPVLVKEG--NILACTFHPELTDD  196 (208)
T ss_dssp             ------ECSSCEEEEEE-TT---EEEEEEET--TEEEESSCGGGSSC
T ss_pred             ------CCCCcEEEEEE-CC---EEEEEEEC--CEEEEEeCCCcCCc
Confidence                  67889999998 43   48899975  59999999999764

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.81  E-value=2e-20  Score=180.02  Aligned_cols=196  Identities=18%  Similarity=0.230  Sum_probs=113.9

Q ss_pred             CccchHHHHHHHHHHc----CCeEEEEEcCCChhH---H--HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy12875         41 YTSYIAASYVKNIEAA----GARVVPILIGQDREY---Y--AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKI  111 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~~~---~--~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~  111 (308)
                      .++|.  |+.++|+.+    +..+.+.++++..-+   .  .+.++.+|||++|||..+  +      ......+.++.+
T Consensus       306 ~DaY~--Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~--~------~~~g~i~~ir~a  375 (535)
T 3nva_A          306 KDSYI--SIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGS--R------GAEGKIKAIKYA  375 (535)
T ss_dssp             GGGGH--HHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSS--T------THHHHHHHHHHH
T ss_pred             chhHH--HHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCC--c------cHHHHHHHHHHH
Confidence            45664  667777655    467887776543210   0  236789999999999632  1      123566777777


Q ss_pred             HHcCCCccEEEechhhhHHHHHhcCCccc--cccccccc----cccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHH
Q psy12875        112 NEEGVTFPVLGVCLGFELILQVSNNDTDF--RKSCKVQQ----VNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFE  185 (308)
Q Consensus       112 ~~~g~~~PvlGIC~G~Qll~~~~~gg~~~--~~~~~~~~----~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Q  185 (308)
                      .+++  +|+||||+|||+|+.+ +||++.  ++....+.    ..+.+.+.|....                        
T Consensus       376 ~~~~--~PiLGIClG~Qll~va-~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~------------------------  428 (535)
T 3nva_A          376 REHN--IPFLGICFGFQLSIVE-FARDVLGLSEANSTEINPNTKDPVITLLDEQKN------------------------  428 (535)
T ss_dssp             HHHT--CCEEEETHHHHHHHHH-HHHTTTCCTTCEETTTCTTCSCEEEECBCSSSC------------------------
T ss_pred             HHcC--CcEEEECcchhHHHHH-hhccccCccCCcccccCCCCCCCeeecchhccc------------------------
Confidence            7754  9999999999999999 999873  32211100    0111222221100                        


Q ss_pred             HHHHHhCCcccccCCccccee-eecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeeccccccCCCCCeEE
Q psy12875        186 LILQVSNNDTDFRKSCKVQQV-NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQDMIKYGLTETWNI  263 (308)
Q Consensus       186 ll~~~~G~~v~~~~~g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~~~~~~l~~~~~v  263 (308)
                               +..  -|..... .+.+.+   .+++.+.+        .++.... ..+.|+|.|++...... -+++|++
T Consensus       429 ---------~~~--~ggtmrlg~h~v~l---~~gS~L~~--------iyG~~~I~erHrHryeVNs~h~q~l-~~~GL~v  485 (535)
T 3nva_A          429 ---------VTQ--LGGTMRLGAQKIIL---KEGTIAYQ--------LYGKKVVYERHRHRYEVNPKYVDIL-EDAGLVV  485 (535)
T ss_dssp             ---------BCS--SCCCCEEEEEEEEE---CTTSHHHH--------HHTSSEEEEEEEECCEECHHHHHHH-HHTTCEE
T ss_pred             ---------ccc--cCCccccCceEEEE---cCCCcHHH--------HhCCCeeeecccccceechHHHhhc-ccCCeEE
Confidence                     000  0000000 111111   12343333        2222211 24567888865322111 2689999


Q ss_pred             EEEecCCCceEEEEEEecCCC-EEEEeecCCccCccc
Q psy12875        264 LTLSKYKSWEFVSTVEHKEYP-IVGIQFHPEKNAYEW  299 (308)
Q Consensus       264 ia~s~~~~~~~v~ai~~~~~p-~~GvQFHPE~~~~~~  299 (308)
                      +|+++|+.   |+|+|++++| ++|+|||||+..++.
T Consensus       486 sA~s~DG~---IEAIE~~~~pf~vGVQfHPE~~~~p~  519 (535)
T 3nva_A          486 SGISENGL---VEIIELPSNKFFVATQAHPEFKSRPT  519 (535)
T ss_dssp             EEECTTCC---EEEEECTTSSCEEEESSCGGGGCCSS
T ss_pred             EEEeCCCC---EEEEEeCCCCcEEEEEeCCEecCCCC
Confidence            99998875   8899999999 589999999987754

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.81  E-value=2.9e-20  Score=181.59  Aligned_cols=221  Identities=17%  Similarity=0.208  Sum_probs=117.9

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh---hHHHHhcCCCCEEEEcCCCCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR---EYYAEILTQINGVVIPGGGTGFDH   93 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~---~~~~~~l~~~dGlilpGG~~~~~~   93 (308)
                      .++.|++...-..       ..+.+.++. .++..+..+.|+.+.+++++++.   +..++.++++|||++|||..  ++
T Consensus       299 ~~v~I~ivgkyv~-------l~D~y~Sv~-~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfG--d~  368 (550)
T 1vco_A          299 RTVKIAIAGKYVK-------MPDAYLSLL-EALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFG--VR  368 (550)
T ss_dssp             EEEEEEEEESCC----------CTTHHHH-HHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCS--ST
T ss_pred             CceEEcccCCeEE-------EEecHHHHH-HHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCC--Cc
Confidence            3577886544211       123333432 34445555567788888776532   22445678999999999852  22


Q ss_pred             CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccc-ccccccccceeeecCCCCcchhhhHhhhc
Q psy12875         94 PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKS-CKVQQVNLNLKFLPGAKRSSLFSQINEEG  172 (308)
Q Consensus        94 ~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~-~~~~~~~~~l~~~pg~~~~~~~~~i~~~~  172 (308)
                      .      ....++.++.+.+.  ++|+||||+|||+|+.+ +||++.... .....      +.++...|.. ..+. .+
T Consensus       369 ~------~~g~i~~ir~a~e~--~iPiLGICLGmQlL~~a-~Gg~v~~l~~~~s~E------~~~~~~hpvi-~~~~-~q  431 (550)
T 1vco_A          369 G------IEGKVRAAQYARER--KIPYLGICLGLQIAVIE-FARNVAGLKGANSTE------FDPHTPHPVI-DLMP-EQ  431 (550)
T ss_dssp             T------HHHHHHHHHHHHHT--TCCEEEETHHHHHHHHH-HHHHTSCCTTCEETT------TCTTCSCEEE-EESC-GG
T ss_pred             c------hhhhHHHHHHHHHC--CCcEEEECcCHHHHHHH-hCcccccCCcccccc------ccCCCCCCeE-Eecc-cc
Confidence            1      12455667777764  49999999999999999 888764211 00000      0011111100 0000 00


Q ss_pred             CCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeecc
Q psy12875        173 VTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQD  251 (308)
Q Consensus       173 ~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~  251 (308)
                      .++|.+                      +.....+++....  .+++ +       +...+..... ..+.|.|.|+...
T Consensus       432 ~~i~~~----------------------ggtmrlG~~~v~i--~~~s-~-------l~~iy~~~~v~e~h~H~Y~Vns~~  479 (550)
T 1vco_A          432 LEVEGL----------------------GGTMRLGDWPMRI--KPGT-L-------LHRLYGKEEVLERHRHRYEVNPLY  479 (550)
T ss_dssp             GCC-------------------------CCCCEEEEEEEEE--CTTS-H-------HHHHHCCSEEEEEEEESEEECHHH
T ss_pred             cccccc----------------------CCcccccceEEEE--ccCc-h-------hhHhcCCceeeeeccceEEEchHH
Confidence            001100                      0000011110000  0111 1       1111222111 3678888886543


Q ss_pred             ccccCCC-CCeEEEEEecCC----CceEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875        252 MIKYGLT-ETWNILTLSKYK----SWEFVSTVEHKEYPIV-GIQFHPEKNAYEW  299 (308)
Q Consensus       252 ~~~~~l~-~~~~via~s~~~----~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~  299 (308)
                      ..  .++ ++++++|+++++    +. +|++++++++|+| |+|||||+..++.
T Consensus       480 ~~--~l~~~gl~v~a~s~dG~g~~~~-~VeaIe~~~~p~fvGVQFHPE~~~~p~  530 (550)
T 1vco_A          480 VD--GLERAGLVVSATTPGMRGRGAG-LVEAIELKDHPFFLGLQSHPEFKSRPM  530 (550)
T ss_dssp             HH--HHHHHTEEEEEECCCBTTBSTT-CEEEEEETTSSSEEEESSCGGGGCBTT
T ss_pred             hh--ccccCCeEEEEEeCCCCccCCC-cEEEEEeCCCCEEEEEEeCCccCCCCC
Confidence            21  144 689999999774    21 5899999999988 9999999998764

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.80  E-value=3.8e-20  Score=162.87  Aligned_cols=92  Identities=16%  Similarity=0.282  Sum_probs=66.6

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc---CCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA---GARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDH   93 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a---G~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~   93 (308)
                      .+|+|||+.... .             +  .+|.++|+++   |+++++++.   .+    .+.++||||||||...   
T Consensus         2 ~~~~I~Il~~~~-~-------------~--~~~~~~l~~~~~~G~~~~~~~~---~~----~l~~~dglil~GG~~~---   55 (227)
T 2abw_A            2 SEITIGVLSLQG-D-------------F--EPHINHFIKLQIPSLNIIQVRN---VH----DLGLCDGLVIPGGEST---   55 (227)
T ss_dssp             CCEEEEEECTTS-C-------------C--HHHHHHHHTTCCTTEEEEEECS---HH----HHHTCSEEEECCSCHH---
T ss_pred             CCcEEEEEeCCC-C-------------c--HHHHHHHHHhccCCeEEEEEcC---cc----ccccCCEEEECCCcHH---
Confidence            468999997541 1             1  2578999999   988877752   22    3567999999998621   


Q ss_pred             CCchhHH--H--HHHHHHHHHHHHc-CCCccEEEechhhhHHHHHhcCCcc
Q psy12875         94 PNGYADA--G--RQILHLVDKINEE-GVTFPVLGVCLGFELILQVSNNDTD  139 (308)
Q Consensus        94 ~~~~~~~--~--~~~~e~~~~~~~~-g~~~PvlGIC~G~Qll~~~~~gg~~  139 (308)
                        .+...  .  ..+.+.++++.++ +  +||||||+|||+|+.+ +||+.
T Consensus        56 --~~~~~~~~d~~~~~~~i~~~~~~~g--~PilGIC~G~QlL~~~-~gg~~  101 (227)
T 2abw_A           56 --TVRRCCAYENDTLYNALVHFIHVLK--KPIWGTCAGCILLSKN-VENIK  101 (227)
T ss_dssp             --HHHHHTTHHHHHHHHHHHHHHHTSC--CCEEEETHHHHHTEEE-EECCC
T ss_pred             --HHHHHHHHhHHHHHHHHHHHHHhcC--CEEEEECHHHHHHHHH-hcCCc
Confidence              12222  1  3457778888885 5  9999999999999999 88864

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.80  E-value=6e-20  Score=181.28  Aligned_cols=194  Identities=21%  Similarity=0.296  Sum_probs=115.0

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCch
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGY   97 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~   97 (308)
                      .|.|+|+.....              +. .++.++|+++|+.+++++..   +.  ..++.+||||||||+ +..+   .
T Consensus         4 m~~I~Iid~~~g--------------~~-~~~~~~l~~~G~~~~vv~~~---~~--~~l~~~DglILpGgG-~~~~---~   59 (555)
T 1jvn_A            4 MPVVHVIDVESG--------------NL-QSLTNAIEHLGYEVQLVKSP---KD--FNISGTSRLILPGVG-NYGH---F   59 (555)
T ss_dssp             SCEEEEECCSCS--------------CC-HHHHHHHHHTTCEEEEESSG---GG--CCSTTCSCEEEEECS-CHHH---H
T ss_pred             CCEEEEEECCCC--------------CH-HHHHHHHHHCCCEEEEECCc---cc--cccccCCEEEECCCC-chHh---H
Confidence            489999953211              11 36789999999999887632   11  236789999999976 2211   1


Q ss_pred             hHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHHhc--CCccccccccccccccceeeecCCCCcchhhhHhhhcC
Q psy12875         98 ADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQVSN--NDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGV  173 (308)
Q Consensus        98 ~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~--gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~  173 (308)
                      .+..+  .+.+.++++.+++  +||||||+|||+|+.+ +  ||. ++.          +.+.+|.....     .....
T Consensus        60 ~~~l~~~~~~~~i~~~~~~g--~PiLGIC~G~QlL~~a-~~egg~-~~~----------Lg~lgg~v~~~-----~~~~~  120 (555)
T 1jvn_A           60 VDNLFNRGFEKPIREYIESG--KPIMGIXVGLQALFAG-SVESPK-STG----------LNYIDFKLSRF-----DDSEK  120 (555)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT--CCEEEEEHHHHTTEEE-ETTBTT-CCC----------CCSEEEEEEEC-----CTTTS
T ss_pred             hhhhhhccHHHHHHHHHHcC--CcEEEEchhhhhhhhh-hhcCCC-ccc----------cCCCCcEEEEC-----CcCCC
Confidence            12222  3567788887744  9999999999999998 5  222 211          22211111100     00001


Q ss_pred             CCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeecccc
Q psy12875        174 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMI  253 (308)
Q Consensus       174 ~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~  253 (308)
                      +.|.+|+                            +...   .. +++|++++..+.        ++++|++.+......
T Consensus       121 ~~~~~G~----------------------------~~v~---~~-~~L~~~l~~~~~--------~~~vHS~~~~~i~~~  160 (555)
T 1jvn_A          121 PVPEIGW----------------------------NSCI---PS-ENLFFGLDPYKR--------YYFVHSFAAILNSEK  160 (555)
T ss_dssp             CSSEEEE----------------------------ECCC---CC-TTCCTTCCTTSC--------EEEEESEECBCCHHH
T ss_pred             CCccccc----------------------------eEEE---Ec-CHHHhhCCCCce--------EEEEEEEEEEecccc
Confidence            2233333                            2111   12 678887765432        377888887542100


Q ss_pred             ccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        254 KYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       254 ~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                      ...+|+++.++|+++.+...++++++..  ++||+|||||++.
T Consensus       161 ~~~L~~g~~vlA~s~~~~D~~i~ai~~~--~i~GvQFHPE~s~  201 (555)
T 1jvn_A          161 KKNLENDGWKIAKAKYGSEEFIAAVNKN--NIFATQFHPEKSG  201 (555)
T ss_dssp             HHHHHHTTCEEEEEEETTEEEEEEEEET--TEEEESSBGGGSH
T ss_pred             cccCCCCCEEEEEEcCCCCCeEEEEEeC--CEEEEEeCcEecC
Confidence            0002567889999875422368999953  7999999999873

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.78  E-value=7.2e-20  Score=178.61  Aligned_cols=203  Identities=18%  Similarity=0.250  Sum_probs=108.3

Q ss_pred             HHHHHHHHHcCC----eEEEEEcCCChhHHH----HhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875         47 ASYVKNIEAAGA----RVVPILIGQDREYYA----EILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTF  118 (308)
Q Consensus        47 ~~~~~~l~~aG~----~~~~i~~~~~~~~~~----~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~  118 (308)
                      .|+.++|+.+|+    .+.+++++.  +++.    +.+.++|||++|||+.+  +.      .....+.++++.+.  ++
T Consensus       306 ~Si~~aL~~~G~~~~~~V~i~~~d~--e~i~~~~~~~l~~~DGIilsGGpg~--~~------~~g~~~~i~~a~~~--~~  373 (545)
T 1s1m_A          306 KSVIEALKHGGLKNRVSVNIKLIDS--QDVETRGVEILKGLDAILVPGGFGY--RG------VEGMITTARFAREN--NI  373 (545)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEEH--HHHHHHCTTTTTTCSEEEECCCCSS--TT------HHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHhCcccCCeEEEccCCH--HHhhhhhhhhhhcCCEEEECCCCCC--cc------chhhHHHHHHHHHC--CC
Confidence            467778877764    556666542  2332    34678999999999632  21      13456677777764  49


Q ss_pred             cEEEechhhhHHHHHhcCCccccccc-cccccccceeeecCCCCcchhhhHhh---hcCCCCeeeeehhHHHHHHHhCCc
Q psy12875        119 PVLGVCLGFELILQVSNNDTDFRKSC-KVQQVNLNLKFLPGAKRSSLFSQINE---EGVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       119 PvlGIC~G~Qll~~~~~gg~~~~~~~-~~~~~~~~l~~~pg~~~~~~~~~i~~---~~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      |+||||+|||+|+.+ +||++..... ....      +.++...|.. ..+..   ....++  +              .
T Consensus       374 PiLGIClG~Qll~va-~Gg~v~~l~~a~s~E------~~~~~~hpvi-~l~~~w~~~~g~~~--~--------------q  429 (545)
T 1s1m_A          374 PYLGICLGMQVALID-YARHVANMENANSTE------FVPDCKYPVV-ALITEWRDENGNVE--V--------------R  429 (545)
T ss_dssp             CEEEETHHHHHHHHH-HHHHHHCCTTCEETT------TCSSCSCEEE-ECTTTCCCTTSCCC------------------
T ss_pred             cEEEECChHHHHHHH-hCCceecCCCCcccc------cCCCCCCceE-Eeeccccccccccc--c--------------c
Confidence            999999999999999 9988742110 0000      0011111100 00000   000000  0              0


Q ss_pred             ccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC-ceeeccceeeeeccccccCC-CCCeEEEEEecCCCc
Q psy12875        195 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP-LTHNNHIWCITRQDMIKYGL-TETWNILTLSKYKSW  272 (308)
Q Consensus       195 v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~H~~~v~~~~~~~~~l-~~~~~via~s~~~~~  272 (308)
                      ......|.....++.....  .+++.+.+        .+.... ...+.|+|.|+......  + +++++++|+++++. 
T Consensus       430 ~~~~~~ggtmrlG~~~v~l--~~~s~l~~--------iyg~~~v~e~h~Hry~VNs~~~~~--l~~~gl~v~a~s~dg~-  496 (545)
T 1s1m_A          430 SEKSDLGGTMRLGAQQCQL--VDDSLVRQ--------LYNAPTIVERHRHRYEVNNMLLKQ--IEDAGLRVAGRSGDDQ-  496 (545)
T ss_dssp             --------CCEEEEEEEEE--CTTCHHHH--------HTTSSEEEEEEEECCEECHHHHHH--HHHTTCEEEEECSSSC-
T ss_pred             ccccccCccccccceeeEe--ccCCHHHH--------hcCCceEEEecCcceEEChHHhhh--cccCCeEEEEECCCCC-
Confidence            0000000000001100000  01222211        121111 13567888887544321  3 48999999998874 


Q ss_pred             eEEEEEEecCCCEE-EEeecCCccCccc
Q psy12875        273 EFVSTVEHKEYPIV-GIQFHPEKNAYEW  299 (308)
Q Consensus       273 ~~v~ai~~~~~p~~-GvQFHPE~~~~~~  299 (308)
                       .+++++++++|+| |+|||||+..++.
T Consensus       497 -~VEaie~~~~p~flGVQFHPE~~~~p~  523 (545)
T 1s1m_A          497 -LVEIIEVPNHPWFVACQFHPEFTSTPR  523 (545)
T ss_dssp             -CEEEEECTTSSSEEEESSCGGGTCCTT
T ss_pred             -ceEEEEeCCCCEEEEEeCCCCCCCCCC
Confidence             3889999999987 9999999998765

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.66  E-value=4.7e-16  Score=141.70  Aligned_cols=191  Identities=14%  Similarity=0.129  Sum_probs=109.9

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChh---------------HHHH-hcCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDRE---------------YYAE-ILTQI   79 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~---------------~~~~-~l~~~   79 (308)
                      ++...|||+-. +..          ...| ...+.+.|...+.++.+..+.....               .++. ..+++
T Consensus        33 irplkI~ILnl-mp~----------k~~t-e~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~  100 (301)
T 2vdj_A           33 IRALKIAILNL-MPT----------KQET-EAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKF  100 (301)
T ss_dssp             SCCEEEEEECC-CSS----------HHHH-HHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCE
T ss_pred             CCCceEEEEeC-CCC----------cCch-HHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCccccccccc
Confidence            44568999865 211          1122 4456677766665555443332211               1333 24789


Q ss_pred             CEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeec
Q psy12875         80 NGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLP  157 (308)
Q Consensus        80 dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~p  157 (308)
                      ||+|++|++....+.  ..|-.   .+.++++.+.++  .+|+||||+|+|+++.+ +||.......             
T Consensus       101 DglIITGap~~~~~~ed~~yw~---el~~li~~~~~~--~~~~lgIC~GaQ~~l~~-~~G~~k~~~~-------------  161 (301)
T 2vdj_A          101 DGLIITGAPVETLSFEEVDYWE---ELKRIMEYSKTN--VTSTLHICWGAQAGLYH-HYGVQKYPLK-------------  161 (301)
T ss_dssp             EEEEECCCTTTTSCGGGSTTHH---HHHHHHHHHHHH--EEEEEEETHHHHHHHHH-HHCCCCEEEE-------------
T ss_pred             CEEEECCCCCcCCCcccCchHH---HHHHHHHHHHHc--CCcEEEEcHHHHHHHHH-hCCCccccCC-------------
Confidence            999999998544331  12222   333334434443  49999999999998877 5553211100             


Q ss_pred             CCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC
Q psy12875        158 GAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP  237 (308)
Q Consensus       158 g~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (308)
                                       .+.+||-            .+             ...    ...++|+.+++..+.+      
T Consensus       162 -----------------~K~~Gv~------------~~-------------~~~----~~~~pL~~g~~~~f~~------  189 (301)
T 2vdj_A          162 -----------------EKMFGVF------------EH-------------EVR----EQHVKLLQGFDELFFA------  189 (301)
T ss_dssp             -----------------EEEEEEE------------EE-------------EEC----CSSCGGGTTCCSEEEE------
T ss_pred             -----------------CCEEEEE------------EE-------------Eec----CCCCccccCCCCceEe------
Confidence                             0112221            11             000    2467899888776643      


Q ss_pred             ceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        238 LTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       238 ~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                        .++|+-.+..+.+.  .+ ++++++|.|+.++   +++++.++.+++++|||||.+..
T Consensus       190 --phsr~~~~~~~~v~--~~-pga~vLA~S~~~~---~~~~~~~~~~~~~vQgHpEyd~~  241 (301)
T 2vdj_A          190 --VHSRHTEVRESDIR--EV-KELTLLANSEEAG---VHLVIGQEGRQVFALGHSEYSCD  241 (301)
T ss_dssp             --EEEEEEECCHHHHH--TC-TTEEEEEEETTTE---EEEEEEGGGTEEEECSCTTCCTT
T ss_pred             --eeEeccCcCHHHcc--CC-CCCEEEEeCCCCc---ceEEEecCCCEEEEECCCCCCHH
Confidence              44433233322221  14 3999999999998   66999866679999999999865

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.64  E-value=8.7e-16  Score=140.32  Aligned_cols=190  Identities=16%  Similarity=0.140  Sum_probs=109.8

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC--------hhH-------HHH-hcCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD--------REY-------YAE-ILTQI   79 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~--------~~~-------~~~-~l~~~   79 (308)
                      ++...|||+-. +..          ...| ...+.+.|...+.++.+..+...        .+-       ++. ..+++
T Consensus        45 irplkI~ILnl-mp~----------k~~t-e~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~  112 (312)
T 2h2w_A           45 IRPLEILILNL-MPD----------KIKT-EIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKF  112 (312)
T ss_dssp             CCCEEEEEECC-CSS----------HHHH-HHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCE
T ss_pred             CCCceEEEEeC-CCC----------cCch-HHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCc
Confidence            44568999965 211          1122 45667788777766555433221        111       111 24679


Q ss_pred             CEEEEcCCCCCCCCC--CchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeec
Q psy12875         80 NGVVIPGGGTGFDHP--NGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLP  157 (308)
Q Consensus        80 dGlilpGG~~~~~~~--~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~p  157 (308)
                      ||+|++|++....+.  ..|-.....++++   +.++  .+|+||||+|+|+++.+ +||.......             
T Consensus       113 DglIITGsP~~~~~~ed~~yw~el~~li~~---~~~~--~~p~LGIC~GaQ~~l~~-~~G~~k~~~~-------------  173 (312)
T 2h2w_A          113 DGFIITGAPVELLPFEEVDYWEELTEIMEW---SRHN--VYSTMFICWAAQAGLYY-FYGIPKYELP-------------  173 (312)
T ss_dssp             EEEEECCCSCTTSCGGGSTTHHHHHHHHHH---HHHH--EEEEEEETHHHHHHHHH-HHCCCCEEEE-------------
T ss_pred             CEEEECCCCCCCCCCccCchHHHHHHHHHH---HHHc--CCcEEEECHHHHHHHHH-hCCCccccCC-------------
Confidence            999999998544331  1222223344444   4343  49999999999998888 6653211100             


Q ss_pred             CCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCC
Q psy12875        158 GAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKP  237 (308)
Q Consensus       158 g~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (308)
                                       .+.+||-            .+           ..       ...++|+++++..+.+      
T Consensus       174 -----------------~K~~Gv~------------~~-----------~~-------~~~~pL~~g~~~~f~v------  200 (312)
T 2h2w_A          174 -----------------QKLSGVY------------KH-----------RV-------AKDSVLFRGHDDFFWA------  200 (312)
T ss_dssp             -----------------EEEEEEE------------EE-----------EE-------SSCCGGGTTCCSEEEE------
T ss_pred             -----------------CCEEEEE------------EE-----------EE-------cCCCccccCCCCceEe------
Confidence                             0112221            11           00       1266788888776543      


Q ss_pred             ceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        238 LTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       238 ~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                        .++|+..+....+.   .+++++++|.|+.++   +++++.++.+++++|||||.+..
T Consensus       201 --phsr~~e~~~~~v~---~~pga~vLA~S~~~~---~q~~~~~~~~~~~vQgHPEyd~~  252 (312)
T 2h2w_A          201 --PHSRYTEVKKEDID---KVPELEILAESDEAG---VYVVANKSERQIFVTGHPEYDRY  252 (312)
T ss_dssp             --EEEEEEECCHHHHT---TCC-CEEEEEETTTE---EEEEECSSSSEEEECSCTTCCTT
T ss_pred             --eEEeccccCHHHcc---CCCCCEEEEcCCCCc---ceEEEecCCCEEEEECCCCCCHH
Confidence              44433333322221   225999999999998   66999877789999999999865

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.25  E-value=7.4e-11  Score=125.20  Aligned_cols=101  Identities=16%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCC-C
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHP-N   95 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~-~   95 (308)
                      .||.|+|+..+..+              ...++.++++++|+.+..+++.+- ..-+..++++|+|++|||.+.-+.. .
T Consensus      1046 ~~pkVaIi~~~G~N--------------~~~~~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~d~lvlPGGfSygD~l~~ 1110 (1303)
T 3ugj_A         1046 ARPKVAVLREQGVN--------------SHVEMAAAFHRAGFDAIDVHMSDL-LGGRIGLGNFHALVACGGFSYGDVLGA 1110 (1303)
T ss_dssp             CCCEEEEEECTTCC--------------CHHHHHHHHHHTTCEEEEEEHHHH-HTTSCCGGGCSEEEECCSCGGGGTTST
T ss_pred             CCCEEEEEecCCcC--------------CHHHHHHHHHHhCCceEEEeeccc-ccCcccHhhCCEEEECCCCcchhhhcc
Confidence            58999999887653              234677899999999998875310 0001257789999999997522110 0


Q ss_pred             chhHHH-----HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         96 GYADAG-----RQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        96 ~~~~~~-----~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .-....     ..+.+.++++.++ .++|+||||+|||+|+.+
T Consensus      1111 g~~~a~~~l~~~~l~~~l~~~~~~-~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A         1111 GEGWAKSILFNHRVRDEFETFFHR-PQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp             THHHHHHHHTSHHHHHHHHHHHHS-SSCEEEEETHHHHHHHTT
T ss_pred             chhHHHHHHhchhHHHHHHHHHHh-CCCcEEEECHHHHHHHHh
Confidence            000000     1344555655432 359999999999999976

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.65  E-value=4.7e-08  Score=84.29  Aligned_cols=102  Identities=17%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHP   94 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~   94 (308)
                      ...|.|++...-+..        +.++.|+ +++.+++++.|+++..+.+.. +.++..+.+.++|+|++|||.. .   
T Consensus        25 ~~~~~i~~Ip~As~~--------~~~~~~~-~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~-~---   91 (206)
T 3l4e_A           25 LQGKTVTFIPTASTV--------EEVTFYV-EAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNT-F---   91 (206)
T ss_dssp             CTTCEEEEECGGGGG--------CSCCHHH-HHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCH-H---
T ss_pred             cCCCEEEEECCCCCC--------CCHHHHH-HHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCH-H---
Confidence            345889888765432        1124565 578999999999887664332 3344445678899999999852 1   


Q ss_pred             CchhHH--HHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         95 NGYADA--GRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        95 ~~~~~~--~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                       ...+.  ...+.+.+++++++|  +|++|+|.|||+++..
T Consensus        92 -~l~~~L~~~gl~~~l~~~~~~G--~p~~G~sAGa~~l~~~  129 (206)
T 3l4e_A           92 -FLLQELKRTGADKLILEEIAAG--KLYIGESAGAVITSPN  129 (206)
T ss_dssp             -HHHHHHHHHTHHHHHHHHHHTT--CEEEEETHHHHTTSSB
T ss_pred             -HHHHHHHHCChHHHHHHHHHcC--CeEEEECHHHHHhccc
Confidence             11121  125678888888855  9999999999999854

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=98.48  E-value=1.1e-07  Score=80.90  Aligned_cols=45  Identities=22%  Similarity=0.402  Sum_probs=36.4

Q ss_pred             eeeecCCCCcch----hhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        153 LKFLPGAKRSSL----FSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       153 l~~~pg~~~~~~----~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +.++|||+.+..    ...++....++|+||||+|||+|+.++|+++.+
T Consensus        51 iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~Gg~v~~   99 (192)
T 1i1q_B           51 LMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQ   99 (192)
T ss_dssp             EEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTSCCCCC
T ss_pred             EEECCCCcCchhCchHHHHHHHHhcCCCEEEECcChHHHHHHhCCEEEe
Confidence            889999998753    224444567899999999999999999998755

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=98.41  E-value=1e-07  Score=83.49  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      .+|.|+|...-...       .+ ++.|+ +++.+++++.|+++..+....+   ..+.++++|+|++|||..  .   .
T Consensus        30 ~~~~i~iI~~a~~~-------~~-~~~~~-~~~~~al~~lG~~~~~v~~~~d---~~~~l~~ad~I~lpGG~~--~---~   92 (229)
T 1fy2_A           30 GRRSAVFIPFAGVT-------QT-WDEYT-DKTAEVLAPLGVNVTGIHRVAD---PLAAIEKAEIIIVGGGNT--F---Q   92 (229)
T ss_dssp             TCCEEEEECTTCCS-------SC-HHHHH-HHHHHHHGGGTCEEEETTSSSC---HHHHHHHCSEEEECCSCH--H---H
T ss_pred             CCCeEEEEECCCCC-------CC-HHHHH-HHHHHHHHHCCCEEEEEecccc---HHHHHhcCCEEEECCCcH--H---H
Confidence            46888888654321       11 23454 5788999999998766543222   223567799999999852  1   1


Q ss_pred             hhHHHH--HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         97 YADAGR--QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        97 ~~~~~~--~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..+..+  .+.+.+++++++|  +|++|+|.|||+|+..
T Consensus        93 ~~~~l~~~gl~~~l~~~~~~G--~p~~G~sAG~~~l~~~  129 (229)
T 1fy2_A           93 LLKESRERGLLAPMADRVKRG--ALYIGWSAGANLACPT  129 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT--CEEEEETHHHHHTSSB
T ss_pred             HHHHHHHCChHHHHHHHHHcC--CEEEEECHHHHhhccc
Confidence            222222  4677788888755  9999999999999976

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=98.33  E-value=3.2e-07  Score=85.93  Aligned_cols=48  Identities=23%  Similarity=0.362  Sum_probs=39.1

Q ss_pred             cceeeecCCCCcch----hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||+.|..    ...+++. ..++|+||||+|||+|+.++||++.+.
T Consensus       233 DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~  285 (379)
T 1a9x_B          233 DGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKM  285 (379)
T ss_dssp             SEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhCcEEEec
Confidence            56999999998763    4455654 457999999999999999999998663

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=98.31  E-value=4.2e-07  Score=77.37  Aligned_cols=48  Identities=27%  Similarity=0.348  Sum_probs=37.6

Q ss_pred             cceeeecCCCCcch-------hhhHhhhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL-------FSQINEEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~-------~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+.||++.+..       ...+++...++|+||||+|||+|+.++||++.+.
T Consensus        47 dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGIC~G~QlL~~~~gg~v~~~  101 (195)
T 1qdl_B           47 DRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRA  101 (195)
T ss_dssp             SEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEE
T ss_pred             CEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEEehHHHHHHHHhCCEEecc
Confidence            35788888877552       2445555568999999999999999999998764

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.21  E-value=8e-07  Score=78.00  Aligned_cols=48  Identities=23%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             cceeeecCCCCcc-------------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSS-------------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~-------------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+++||..|.             ....|++ ...++|+||||+|||+|+.++||+|.+.
T Consensus        47 d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~  108 (236)
T 3l7n_A           47 DMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHS  108 (236)
T ss_dssp             SEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEE
T ss_pred             CEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecC
Confidence            4688999998752             2334444 3568999999999999999999998774

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=98.05  E-value=2.4e-06  Score=75.09  Aligned_cols=48  Identities=25%  Similarity=0.352  Sum_probs=36.3

Q ss_pred             cceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+.+||..+.          ....+++. ..++|+||||+|||+|+.++||++.+.
T Consensus        59 Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~  117 (239)
T 1o1y_A           59 SLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRG  117 (239)
T ss_dssp             SEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEC
T ss_pred             CEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecC
Confidence            4578888875542          23344443 568999999999999999999998774

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=98.04  E-value=2.3e-06  Score=85.47  Aligned_cols=48  Identities=17%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             cceeeecCCCCcch---------hhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL---------FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---------~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.++|||+.+..         ...+++ ...++|+||||||||+|+.++||+|.+.
T Consensus       488 DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~  545 (645)
T 3r75_A          488 DVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRR  545 (645)
T ss_dssp             SEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred             CEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcC
Confidence            46899999998763         223333 2568999999999999999999999875

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=97.96  E-value=4.7e-06  Score=73.83  Aligned_cols=48  Identities=23%  Similarity=0.439  Sum_probs=36.7

Q ss_pred             cceeeecCCCCcc--------hhhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSS--------LFSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~--------~~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+.+||..+.        ....+++ ...++|+||||+|||+|+.++||+|.+.
T Consensus        50 d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~  106 (250)
T 3m3p_A           50 SGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDS  106 (250)
T ss_dssp             SEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred             CEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeC
Confidence            4588888887543        1233443 2568999999999999999999999875

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=97.96  E-value=6.1e-06  Score=69.61  Aligned_cols=46  Identities=22%  Similarity=0.397  Sum_probs=35.1

Q ss_pred             ceeeecCCCCcc----hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSS----LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~----~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.+.+|+ .+.    ....+++. ..++|+||||+|||+|+.++||++.+.
T Consensus        46 glil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~   96 (189)
T 1wl8_A           46 GIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRG   96 (189)
T ss_dssp             EEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEEC
T ss_pred             EEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecC
Confidence            46676666 443    24455554 678999999999999999999998764

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=97.92  E-value=3.5e-05  Score=65.24  Aligned_cols=96  Identities=19%  Similarity=0.396  Sum_probs=63.6

Q ss_pred             CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh---------h-----HHHH-hcCCCCEEE
Q psy12875         19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR---------E-----YYAE-ILTQINGVV   83 (308)
Q Consensus        19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~---------~-----~~~~-~l~~~dGli   83 (308)
                      ..|+|+..+...          ...+  ....+.|+++|+++..+......         .     .+++ ..+.+|+|+
T Consensus        24 ~kV~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~li   91 (193)
T 1oi4_A           24 KKIAVLITDEFE----------DSEF--TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALL   91 (193)
T ss_dssp             CEEEEECCTTBC----------THHH--HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEE
T ss_pred             CEEEEEECCCCC----------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEE
Confidence            578998775322          0111  24578899999999888654321         0     0111 134689999


Q ss_pred             EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +|||.. .    ........+.++++++.+++  +||.|||.|.|+|+.+
T Consensus        92 vpGG~~-~----~~l~~~~~l~~~l~~~~~~g--k~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A           92 LPGGHS-P----DYLRGDNRFVTFTRDFVNSG--KPVFAICHGPQLLISA  134 (193)
T ss_dssp             ECCBTH-H----HHHTTSHHHHHHHHHHHHTT--CCEEEETTTHHHHHHH
T ss_pred             ECCCcC-H----HHhhhCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence            999941 1    01111246888899988855  9999999999999987

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=97.90  E-value=4.1e-06  Score=75.15  Aligned_cols=46  Identities=13%  Similarity=0.155  Sum_probs=35.9

Q ss_pred             cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      ..+.+.+|++.+..   ...++.. ..++|+||||+|||+|+.++|+++.
T Consensus        69 dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~  118 (273)
T 2w7t_A           69 DGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV  118 (273)
T ss_dssp             SEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred             CEEEecCCCCCcCchhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence            45888888877543   3344443 4689999999999999999999985

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.90  E-value=5.9e-06  Score=71.24  Aligned_cols=48  Identities=17%  Similarity=0.347  Sum_probs=35.0

Q ss_pred             cceeeecC-CCCcch---hhhHhh--hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPG-AKRSSL---FSQINE--EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg-~~~~~~---~~~i~~--~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+.+| |+.+..   ...+.+  ...++|+||||+|||+|+.++||++.+.
T Consensus        56 DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~  109 (212)
T 2a9v_A           56 DGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKA  109 (212)
T ss_dssp             SEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEE
T ss_pred             CEEEECCCCCCCCcccccchhHHHHHHhCCCCEEEEChHHHHHHHHhCCEEEcC
Confidence            45888888 665442   122222  2568999999999999999999998764

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=97.89  E-value=9.5e-06  Score=71.90  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        165 FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       165 ~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ...+++. ..++|+||||+|||+|+.++||++...
T Consensus        98 ~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~  132 (254)
T 3fij_A           98 IALVRAALDAGKPIFAICRGMQLVNVALGGTLYQD  132 (254)
T ss_dssp             HHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESS
T ss_pred             HHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecc
Confidence            3445543 568999999999999999999998653

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.81  E-value=3.3e-06  Score=72.49  Aligned_cols=45  Identities=33%  Similarity=0.560  Sum_probs=30.2

Q ss_pred             eeecCCCCcchh-h------hHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        154 KFLPGAKRSSLF-S------QINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       154 ~~~pg~~~~~~~-~------~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.||++.+... .      .++. ...++|+||||+|||+|+.++|+++...
T Consensus        44 lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~   96 (211)
T 4gud_A           44 LFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKA   96 (211)
T ss_dssp             EEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----
T ss_pred             EEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCccccc
Confidence            344999886521 1      1222 2468999999999999999999988764

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=97.80  E-value=8.6e-06  Score=79.51  Aligned_cols=49  Identities=16%  Similarity=0.226  Sum_probs=39.1

Q ss_pred             cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      .++.+++||+.+..   ...++.. ..++|+||||+|||+|+.++|+++...+
T Consensus       345 DGIilsGGpg~~~~~g~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~  397 (545)
T 1s1m_A          345 DAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANME  397 (545)
T ss_dssp             SEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCT
T ss_pred             CEEEECCCCCCccchhhHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCC
Confidence            56899999998763   3344443 4689999999999999999999987653

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=97.78  E-value=1.1e-05  Score=78.98  Aligned_cols=49  Identities=14%  Similarity=0.207  Sum_probs=39.1

Q ss_pred             ccceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        150 NLNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       150 ~~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++.+.+|++.+..   +..++.. ..++|+||||||||+|+.++|+++...
T Consensus       356 ~DGIILpGGfGd~~~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l  408 (550)
T 1vco_A          356 VSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGL  408 (550)
T ss_dssp             CSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCC
T ss_pred             CCEEEECCCCCCcchhhhHHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccC
Confidence            356889999998764   3344444 468999999999999999999988764

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=97.78  E-value=9.6e-06  Score=73.34  Aligned_cols=46  Identities=20%  Similarity=0.186  Sum_probs=35.4

Q ss_pred             cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      .++.+.+|++.+..   ...+++. ..++|+||||+|||+|+.++||++.
T Consensus        92 dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~  141 (289)
T 2v4u_A           92 DGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL  141 (289)
T ss_dssp             SEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred             CEEEecCCCCchhHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence            35777777776542   3445544 5689999999999999999999985

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=97.76  E-value=1.4e-05  Score=78.24  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             cceeeecCCCCcchhh--h-Hhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSLFS--Q-INE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~~~--~-i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||..+....  . .+. ...++|+||||+|||+|+.++||+|.+.
T Consensus        55 dgIILsGGp~sv~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~  106 (527)
T 3tqi_A           55 HGIILSGGPETVTLSHTLRAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRT  106 (527)
T ss_dssp             SEEEECCCCC---------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC--
T ss_pred             CEEEECCcCcccccCCChhhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeC
Confidence            4688888887654211  1 111 2568999999999999999999999764

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=97.70  E-value=7e-06  Score=69.04  Aligned_cols=44  Identities=23%  Similarity=0.404  Sum_probs=31.9

Q ss_pred             cceeeecCCCCcc--------hhhhHhhhcCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        151 LNLKFLPGAKRSS--------LFSQINEEGVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       151 ~~l~~~pg~~~~~--------~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      ..+.+.+|+..+.        ..+.++  ..++|+||||+|||+|+.++|+++.
T Consensus        39 dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~PilGIC~G~Qll~~~~gg~~~   90 (186)
T 2ywj_A           39 DALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPILGTCAGMVLLSKGTGINQI   90 (186)
T ss_dssp             SEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCEEEETHHHHHHSSCCSSCCC
T ss_pred             CEEEECCCCchhhhhhhhccCHHHHHH--hcCCcEEEECHHHHHHHHHhCCCcC
Confidence            3577777765432        112232  5689999999999999999998853

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=97.70  E-value=3.8e-05  Score=64.32  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             hcccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC------------hhHHHH-hcCC
Q psy12875         12 TVTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD------------REYYAE-ILTQ   78 (308)
Q Consensus        12 ~~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~------------~~~~~~-~l~~   78 (308)
                      +|.++ +.+|.|+....-+          ...++  .-.+.|+++|+++..+.....            +..+++ ..++
T Consensus         3 ~m~~t-~~~v~il~~~gFe----------~~E~~--~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~   69 (177)
T 4hcj_A            3 AMGKT-NNILYVMSGQNFQ----------DEEYF--ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVE   69 (177)
T ss_dssp             --CCC-CEEEEECCSEEEC----------HHHHH--HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGG
T ss_pred             ccccC-CCEEEEECCCCcc----------HHHHH--HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhH
Confidence            45544 4677777654321          11222  346888999999988764321            011222 2457


Q ss_pred             CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +|+|++|||..   +  ........+.++++++.+++  +||.+||.|.++|+.+
T Consensus        70 yD~liiPGG~g---~--~~l~~~~~~~~~l~~~~~~~--k~iaaIC~g~~~La~a  117 (177)
T 4hcj_A           70 FDAVVFVGGIG---C--ITLWDDWRTQGLAKLFLDNQ--KIVAGIGSGVVIMANA  117 (177)
T ss_dssp             CSEEEECCSGG---G--GGGTTCHHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred             CCEEEECCCcc---H--HHHhhCHHHHHHHHHHHHhC--CEEEEecccHHHHHHC
Confidence            89999999952   1  12222346888899988855  9999999999999876

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=97.70  E-value=0.00024  Score=62.47  Aligned_cols=111  Identities=11%  Similarity=0.115  Sum_probs=64.2

Q ss_pred             ccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC----------------h-hHHH---
Q psy12875         14 TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD----------------R-EYYA---   73 (308)
Q Consensus        14 ~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~----------------~-~~~~---   73 (308)
                      +.+|...|+|+...+..       +++....=.....+.|+++|+++..+.....                . -.+.   
T Consensus        19 ~~~M~kkV~ill~~~~~-------~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~   91 (242)
T 3l3b_A           19 PGSMALNSAVILAGCGH-------MDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESAR   91 (242)
T ss_dssp             -----CEEEEECCCSST-------TTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHH
T ss_pred             cccccCEEEEEEecCCC-------CCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecch
Confidence            44455678888764432       2221111112346888999999988765421                0 0111   


Q ss_pred             ----------H-hcCCCCEEEEcCCCCCC---CC----CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         74 ----------E-ILTQINGVVIPGGGTGF---DH----PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        74 ----------~-~l~~~dGlilpGG~~~~---~~----~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                                + ..+++|+|++|||....   ..    ..........+.++++++.+++  +||.+||.|..+|+.+
T Consensus        92 ~~~~~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~g--k~IaaIC~G~~~La~a  167 (242)
T 3l3b_A           92 IARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAK--KPIGAVCISPAVVVAL  167 (242)
T ss_dssp             HTTTCEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTT--CCEEEETTHHHHHHHH
T ss_pred             hccccCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHh
Confidence                      1 12468999999995210   00    0000012246888899988855  9999999999999987

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=97.68  E-value=2.2e-05  Score=77.29  Aligned_cols=49  Identities=18%  Similarity=0.294  Sum_probs=36.1

Q ss_pred             cceeeecCCCCcch------hhhHhh--hcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        151 LNLKFLPGAKRSSL------FSQINE--EGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       151 ~~l~~~pg~~~~~~------~~~i~~--~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      .++.+++||..+..      ...+.+  ...++|+||||+|||+|+.++||+|.+..
T Consensus        52 dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~  108 (556)
T 3uow_A           52 KGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSK  108 (556)
T ss_dssp             EEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCC
Confidence            45788878876531      122222  24589999999999999999999998764

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=97.68  E-value=2.3e-05  Score=76.55  Aligned_cols=47  Identities=15%  Similarity=0.273  Sum_probs=33.5

Q ss_pred             ceeeecCCCCcchh--hhH-hh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSLF--SQI-NE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~~--~~i-~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ++.+++||..+...  ..+ +. ...++|+||||+|||+|+.++||+|.+.
T Consensus        53 giILsGGp~s~~~~~~~~~~~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~  103 (525)
T 1gpm_A           53 GIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEAS  103 (525)
T ss_dssp             EEEECCCSSCTTSTTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECC
T ss_pred             EEEECCcCccccccCCcchHHHHHHCCCCEEEEChHHHHHHHHcCCEEEeC
Confidence            57777777654310  111 11 2468999999999999999999999775

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=97.62  E-value=2.3e-05  Score=67.91  Aligned_cols=27  Identities=26%  Similarity=0.602  Sum_probs=24.3

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++|+||||+|||+|+.++||++.+.
T Consensus        94 ~~~~PilGIC~G~Qll~~~~GG~v~~~  120 (218)
T 2vpi_A           94 TIGKPVLGICYGMQMMNKVFGGTVHKK  120 (218)
T ss_dssp             TSSCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred             HcCCCEEEEcHHHHHHHHHhCCceEeC
Confidence            457999999999999999999998764

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=97.62  E-value=3.3e-05  Score=75.14  Aligned_cols=47  Identities=19%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             ceeeecCCCCcchh--hhH-hh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSLF--SQI-NE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~~--~~i-~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ++.+++||..+...  ..+ +. ...++|+||||+|||+|+.++||+|.+.
T Consensus        45 giIlsGGp~s~~~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~   95 (503)
T 2ywb_A           45 ALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVERA   95 (503)
T ss_dssp             EEEECCCSSCSSCTTCCCCCGGGGCSSCCEEEETHHHHHHHHTTTCEEECC
T ss_pred             EEEECCCCchhccCCCcchHHHHHhCCCCEEEECHHHHHHHHHhCCeEeeC
Confidence            57777777653310  111 11 2468999999999999999999998764

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=97.59  E-value=0.00035  Score=60.75  Aligned_cols=88  Identities=16%  Similarity=0.321  Sum_probs=58.0

Q ss_pred             HHHHHHHcCCeEEEEEcCCCh------------------------------hHHHH-hcCCCCEEEEcCCCCCCCCCCch
Q psy12875         49 YVKNIEAAGARVVPILIGQDR------------------------------EYYAE-ILTQINGVVIPGGGTGFDHPNGY   97 (308)
Q Consensus        49 ~~~~l~~aG~~~~~i~~~~~~------------------------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~   97 (308)
                      ..+.|+++|.++..+......                              ..+++ ..+++|+|++|||........++
T Consensus        30 p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~  109 (232)
T 1vhq_A           30 TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNF  109 (232)
T ss_dssp             HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCH
T ss_pred             HHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHHcCcccCCEEEECCCcchHHHHhhh
Confidence            457889999999888654210                              01111 13469999999995210000011


Q ss_pred             h------HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcC-Ccc
Q psy12875         98 A------DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNN-DTD  139 (308)
Q Consensus        98 ~------~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~g-g~~  139 (308)
                      .      +..+.+.++++++.+++  +||.+||.|.++|+.+ +. |+.
T Consensus       110 ~~~~~~~~~~~~l~~~l~~~~~~g--k~vaaIC~G~~~La~a-L~~Gr~  155 (232)
T 1vhq_A          110 ASLGSECTVDRELKALAQAMHQAG--KPLGFMCIAPAMLPKI-FDFPLR  155 (232)
T ss_dssp             HHHGGGCCBCHHHHHHHHHHHHTT--CCEEEETTGGGGHHHH-CSSCCE
T ss_pred             hccccccccCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHH-hcCCCE
Confidence            0      11346888899988855  9999999999999998 87 754

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=97.57  E-value=0.00024  Score=60.04  Aligned_cols=99  Identities=13%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCC-------------hhHHHH--hcCCCCE
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQD-------------REYYAE--ILTQING   81 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~-------------~~~~~~--~l~~~dG   81 (308)
                      |...|+|+..+...          ...+  ....+.|+++|.++..+.....             +..+++  ....+|+
T Consensus         2 m~~~v~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~   69 (197)
T 2rk3_A            2 ASKRALVILAKGAE----------EMET--VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDV   69 (197)
T ss_dssp             CCCEEEEEECTTCC----------HHHH--HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSE
T ss_pred             CCCEEEEEECCCCc----------HHHH--HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCE
Confidence            44678888765322          0112  2456889999999888865421             111222  2368999


Q ss_pred             EEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         82 VVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        82 lilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      |++|||...  .  ......+.+.++++++.+++  +||.+||.|.++|+.+
T Consensus        70 livpGG~~~--~--~~l~~~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           70 VVLPGGNLG--A--QNLSESAAVKEILKEQENRK--GLIATICAGPTALLAH  115 (197)
T ss_dssp             EEECCCHHH--H--HHHHHCHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred             EEECCCchh--H--HHhhhCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHC
Confidence            999999410  0  11222346888999988855  9999999999999976

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=97.56  E-value=4.3e-05  Score=69.83  Aligned_cols=24  Identities=38%  Similarity=0.729  Sum_probs=21.9

Q ss_pred             CCCeeeeehhHHHHHHHhCCcccc
Q psy12875        174 TFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       174 ~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      ++|+||||+|||+|+.++||++..
T Consensus       124 ~~PiLGIC~G~Qll~~a~GG~~~~  147 (315)
T 1l9x_A          124 YFPVWGTCLGFEELSLLISGECLL  147 (315)
T ss_dssp             CCCEEEETHHHHHHHHHHHSSCCC
T ss_pred             CceEEEEChHHHHHHHHhCCcccc
Confidence            699999999999999999998654

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=97.55  E-value=4.6e-05  Score=76.80  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             ceeeecCCCCcchh--hhH-hh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSLF--SQI-NE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~~--~~i-~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ++.+++||..+...  ..+ +. ...++|+||||+|||+|+.++||++.+.
T Consensus        75 GIILsGGp~s~~~~~~~~~~~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~  125 (697)
T 2vxo_A           75 AIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGICYGMQMMNKVFGGTVHKK  125 (697)
T ss_dssp             EEEEEECC-------CCCCCGGGTTSSCCEEEEEHHHHHHHHHTTCCBCC-
T ss_pred             EEEECCCCCcccCccchhHHHHHHhCCCCEEEECHHHHHHHHHhCCeEeec
Confidence            47777777654210  001 11 2457999999999999999999998764

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=97.47  E-value=0.0004  Score=57.00  Aligned_cols=79  Identities=16%  Similarity=0.357  Sum_probs=54.1

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         48 SYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      ...+.|+++|.++..+......            ..+++ ....+|+|++|||..   +  ........+.++++++.++
T Consensus        20 ~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~---~--~~~~~~~~l~~~l~~~~~~   94 (168)
T 3l18_A           20 YPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA---P--EIVRLNEKAVMITRRMFED   94 (168)
T ss_dssp             HHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH---H--HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC---H--HHhccCHHHHHHHHHHHHC
Confidence            4568888999998877643210            00111 123589999999952   1  1112234688899999885


Q ss_pred             CCCccEEEechhhhHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~  133 (308)
                      +  +||.+||.|.++|+.+
T Consensus        95 ~--k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           95 D--KPVASICHGPQILISA  111 (168)
T ss_dssp             T--CCEEEETTTHHHHHHT
T ss_pred             C--CEEEEECHhHHHHHHC
Confidence            5  9999999999999976

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=97.43  E-value=0.00035  Score=59.52  Aligned_cols=80  Identities=16%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC---------------hhHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAGARVVPILIGQD---------------REYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKI  111 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~---------------~~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~  111 (308)
                      ...+.|+++|+++..+.....               +..+++ ....+|+|++|||...  +  ........+.++++++
T Consensus        20 ~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~--~--~~l~~~~~l~~~l~~~   95 (205)
T 2ab0_A           20 TTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKG--A--ECFRDSTLLVETVKQF   95 (205)
T ss_dssp             HHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHH--H--HHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCccc--H--HHhccCHHHHHHHHHH
Confidence            346889999999888765432               112333 2367999999999410  1  1112234688899998


Q ss_pred             HHcCCCccEEEechhh-hHHHHH
Q psy12875        112 NEEGVTFPVLGVCLGF-ELILQV  133 (308)
Q Consensus       112 ~~~g~~~PvlGIC~G~-Qll~~~  133 (308)
                      .+++  +||.+||.|. ++|+.+
T Consensus        96 ~~~g--k~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           96 HRSG--RIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HHTT--CEEEEETHHHHHHTTTT
T ss_pred             HHcC--CEEEEECHhHHHHHHHC
Confidence            8855  9999999999 999865

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=97.39  E-value=0.00041  Score=69.07  Aligned_cols=82  Identities=16%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChh---HHHH-hcCCCCEEEEcCCCCCCC-----CCCchhHHHHHHHHHHHHHHHcCCCc
Q psy12875         48 SYVKNIEAAGARVVPILIGQDRE---YYAE-ILTQINGVVIPGGGTGFD-----HPNGYADAGRQILHLVDKINEEGVTF  118 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~---~~~~-~l~~~dGlilpGG~~~~~-----~~~~~~~~~~~~~e~~~~~~~~g~~~  118 (308)
                      ...++|+++|+.+.++.......   .+.. ....+|+|++|||.....     +  +..+....+.++++++++++  |
T Consensus       556 ~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~--d~Lr~~~~a~~fV~e~~~hg--K  631 (688)
T 3ej6_A          556 ALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAM--SPLFPAGRPSQILTDGYRWG--K  631 (688)
T ss_dssp             HHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTC--CTTSCTTHHHHHHHHHHHTT--C
T ss_pred             HHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccch--hhhccCHHHHHHHHHHHHcC--C
Confidence            56799999999999997643210   1111 234689999999964310     1  12333347889999999965  9


Q ss_pred             cEEEechhhhHHHHH
Q psy12875        119 PVLGVCLGFELILQV  133 (308)
Q Consensus       119 PvlGIC~G~Qll~~~  133 (308)
                      ||.+||.|.++|..+
T Consensus       632 pIAAIchgp~lL~~A  646 (688)
T 3ej6_A          632 PVAAVGSAKKALQSI  646 (688)
T ss_dssp             CEEEEGGGHHHHHHT
T ss_pred             EEEEeCccHHHHHHc
Confidence            999999999999977

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=97.39  E-value=0.00058  Score=57.35  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC-Ch------------hHHHHh-cCCCCEE
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ-DR------------EYYAEI-LTQINGV   82 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~------------~~~~~~-l~~~dGl   82 (308)
                      |...|+|+..+...          ...+  ....+.|+++|.++..+.... ..            ..+++. ...+|.|
T Consensus         4 m~kkv~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~l   71 (190)
T 4e08_A            4 MSKSALVILAPGAE----------EMEF--IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVV   71 (190)
T ss_dssp             CCCEEEEEECTTCC----------HHHH--HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEE
T ss_pred             CCcEEEEEECCCch----------HHHH--HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEE
Confidence            45678887664321          1112  244688999999998887653 11            012221 2468999


Q ss_pred             EEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         83 VIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        83 ilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ++|||...  .  ........+.++++++.+++  +||.+||.|.++|+.+
T Consensus        72 ivpGG~~~--~--~~~~~~~~~~~~l~~~~~~~--k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           72 VLPGGLGG--S--NAMGESSLVGDLLRSQESGG--GLIAAICAAPTVLAKH  116 (190)
T ss_dssp             EECCCHHH--H--HHHHHCHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred             EECCCChH--H--HHhhhCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence            99999310  0  01122346888899988855  9999999999999876

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=97.39  E-value=0.00035  Score=70.06  Aligned_cols=100  Identities=11%  Similarity=0.105  Sum_probs=67.4

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEE
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGV   82 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGl   82 (308)
                      .+...|+|+......          ...+  ...++.|+++|+.+.++......            ..+.. ....+|+|
T Consensus       598 i~grKVaILlaDGfE----------e~El--~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDAL  665 (753)
T 3ttv_A          598 VKGRVVAILLNDEVR----------SADL--LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAV  665 (753)
T ss_dssp             CTTCEEEEECCTTCC----------HHHH--HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEE
T ss_pred             CCCCEEEEEecCCCC----------HHHH--HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEE
Confidence            334578888765322          1112  35679999999999988654321            01111 12348999


Q ss_pred             EEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhc
Q psy12875         83 VIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSN  135 (308)
Q Consensus        83 ilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~  135 (308)
                      ++|||+.      ...+....+.++++++.+++  +||.+||.|.++|+.+.+
T Consensus       666 VVPGGg~------~~Lr~d~~vl~~Vre~~~~g--KpIAAIC~Gp~lLa~AGL  710 (753)
T 3ttv_A          666 IVPCGNI------ADIADNGDANYYLMEAYKHL--KPIALAGDARKFKATIKI  710 (753)
T ss_dssp             EECCSCG------GGTTTCHHHHHHHHHHHHTT--CCEEEEGGGGGGGGGGTC
T ss_pred             EECCCCh------HHhhhCHHHHHHHHHHHhcC--CeEEEECchHHHHHHcCC
Confidence            9999932      23333457889999999965  999999999999998733

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=97.38  E-value=3.2e-05  Score=65.73  Aligned_cols=40  Identities=30%  Similarity=0.502  Sum_probs=29.3

Q ss_pred             ceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHhC
Q psy12875        152 NLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVSN  192 (308)
Q Consensus       152 ~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~G  192 (308)
                      .+.+ ||++.+.          ....+++. ..++|+||||+|||+|+.++|
T Consensus        45 glil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g   95 (201)
T 1gpw_B           45 LLFI-PGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESE   95 (201)
T ss_dssp             EEEE-CCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEET
T ss_pred             EEEE-CCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhc
Confidence            4555 8977653          12344443 568999999999999999997

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=97.37  E-value=7.2e-05  Score=72.28  Aligned_cols=47  Identities=26%  Similarity=0.412  Sum_probs=36.9

Q ss_pred             cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      ..+.+.+|++.+..   ...++.. ..++|+||||+|||+|+.++|+++..
T Consensus       352 DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g  402 (535)
T 3nva_A          352 NGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLG  402 (535)
T ss_dssp             SEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTC
T ss_pred             CEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEECcchhHHHHHhhccccC
Confidence            46888888887653   3445443 46899999999999999999999853

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=97.30  E-value=0.00033  Score=58.74  Aligned_cols=99  Identities=21%  Similarity=0.315  Sum_probs=61.9

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh-----------------hHHHH-hcCC
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR-----------------EYYAE-ILTQ   78 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~-----------------~~~~~-~l~~   78 (308)
                      ....|+|+..+...          ...+  ....+.|+++|+++..+......                 ..+++ ....
T Consensus         8 ~~~~v~il~~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~   75 (190)
T 2vrn_A            8 TGKKIAILAADGVE----------EIEL--TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSD   75 (190)
T ss_dssp             TTCEEEEECCTTCB----------HHHH--HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGG
T ss_pred             CCCEEEEEeCCCCC----------HHHH--HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhh
Confidence            34678988764321          0112  23467888999888777543210                 01111 1247


Q ss_pred             CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +|+|++|||...  .  ........+.++++++.+++  +||.+||.|.++|+.+
T Consensus        76 ~D~livpGG~~~--~--~~~~~~~~l~~~l~~~~~~g--k~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           76 YDGLLLPGGTVN--P--DKLRLEEGAMKFVRDMYDAG--KPIAAICHGPWSLSET  124 (190)
T ss_dssp             CSEEEECCCTHH--H--HHHTTCHHHHHHHHHHHHTT--CCEEEC-CTTHHHHHT
T ss_pred             CCEEEECCCchh--H--HHHhhCHHHHHHHHHHHHcC--CEEEEECHhHHHHHhC
Confidence            899999999411  1  01112346888999988855  9999999999999976

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=97.14  E-value=0.00074  Score=57.68  Aligned_cols=103  Identities=16%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             cccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCC-Chh------------HHHH-hcCC
Q psy12875         13 VTSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQ-DRE------------YYAE-ILTQ   78 (308)
Q Consensus        13 ~~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~------------~~~~-~l~~   78 (308)
                      |+..|.+.|+|+..+...          ...+  ....+.|+++|.++..+.... ...            .+++ ....
T Consensus         4 ~~~~m~~~v~ill~~g~~----------~~e~--~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~   71 (208)
T 3ot1_A            4 MEQGMSKRILVPVAHGSE----------EMET--VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEA   71 (208)
T ss_dssp             -----CCEEEEEECTTCC----------HHHH--HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGG
T ss_pred             cccccCCeEEEEECCCCc----------HHHH--HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcC
Confidence            455566789998775432          0112  244688899999988887642 110            1122 1247


Q ss_pred             CCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh-hHHHHH
Q psy12875         79 INGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF-ELILQV  133 (308)
Q Consensus        79 ~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~-Qll~~~  133 (308)
                      +|.|++|||...  .  ........+.++++++.+++  +||.+||.|. .+|+.+
T Consensus        72 ~D~livpGG~~~--~--~~l~~~~~l~~~l~~~~~~g--k~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           72 FDALALPGGVGG--A--QAFADSTALLALIDAFSQQG--KLVAAICATPALVFAKQ  121 (208)
T ss_dssp             CSEEEECCCHHH--H--HHHHTCHHHHHHHHHHHHTT--CEEEEETTHHHHTTTTT
T ss_pred             CCEEEECCCchH--H--HHHhhCHHHHHHHHHHHHcC--CEEEEEChhHHHHHHHC
Confidence            899999999410  0  11122347888999999855  9999999999 888865

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=96.99  E-value=0.00018  Score=61.07  Aligned_cols=118  Identities=19%  Similarity=0.345  Sum_probs=71.4

Q ss_pred             ceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHH---hC---------CcccccCCcccceeee
Q psy12875        152 NLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQV---SN---------NDTDFRKSCKVQQVNL  208 (308)
Q Consensus       152 ~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~---~G---------~~v~~~~~g~~~~~~~  208 (308)
                      .+.+ ||++.+.          ....+++. ..++|+||||+|||+|+.+   +|         +++.+.+..+...+++
T Consensus        43 ~lil-~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~~G~  121 (200)
T 1ka9_H           43 LLVL-PGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQMGW  121 (200)
T ss_dssp             EEEE-CCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEEEE
T ss_pred             EEEE-CCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCceeE
Confidence            4555 8877653          23344443 5689999999999999999   57         4554432001223343


Q ss_pred             cccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEE
Q psy12875        209 NLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGI  288 (308)
Q Consensus       209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~Gv  288 (308)
                      +....  .+  . +.+++. .        .++++|++.+ +       +++. ++ |++++.+.+ ++++.+++ +++|+
T Consensus       122 ~~v~~--~~--~-l~~~~~-~--------~~~~~Hs~~~-~-------~~~~-~v-a~s~~~g~~-~~~~~~~~-~i~gv  175 (200)
T 1ka9_H          122 NALEF--GG--A-FAPLTG-R--------HFYFANSYYG-P-------LTPY-SL-GKGEYEGTP-FTALLAKE-NLLAP  175 (200)
T ss_dssp             EECEE--CG--G-GGGGTT-C--------EEEEEESEEC-C-------CCTT-CC-EEEEETTEE-EEEEEECS-SEEEE
T ss_pred             EEEEe--ch--h-hhcCCC-C--------CEEEeccccc-C-------CCCC-cE-EEEEeCCeE-EEEEEeeC-CEEEE
Confidence            21111  11  2 443332 2        3588999998 4       2333 56 887661223 55667666 89999


Q ss_pred             eecCCccC
Q psy12875        289 QFHPEKNA  296 (308)
Q Consensus       289 QFHPE~~~  296 (308)
                      |||||++.
T Consensus       176 QfHPE~~~  183 (200)
T 1ka9_H          176 QFHPEKSG  183 (200)
T ss_dssp             SSCTTSSH
T ss_pred             ecCCCcCc
Confidence            99999985

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.98  E-value=0.00014  Score=61.07  Aligned_cols=29  Identities=10%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             hHhhh-cCC-CCeeeeehhHHHHHHHhCC-cc
Q psy12875        167 QINEE-GVT-FPVLGVCLGFELILQVSNN-DT  195 (308)
Q Consensus       167 ~i~~~-~~~-~PilGiClG~Qll~~~~G~-~v  195 (308)
                      .+++. ..+ +|+||||+|||+|+.++|+ ++
T Consensus        65 ~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~   96 (191)
T 2ywd_A           65 EVRKRVEEGSLALFGTCAGAIWLAKEIVGYPE   96 (191)
T ss_dssp             HHHHHHHTTCCEEEEETHHHHHHEEEETTCTT
T ss_pred             HHHHHHHCCCCeEEEECHHHHHHHHHhCCCCC
Confidence            44443 457 9999999999999999998 54

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=96.97  E-value=0.0027  Score=54.29  Aligned_cols=96  Identities=16%  Similarity=0.229  Sum_probs=61.6

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHH--------HcCCeEEEEEcCCCh------------hHHHH-hc
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIE--------AAGARVVPILIGQDR------------EYYAE-IL   76 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~--------~aG~~~~~i~~~~~~------------~~~~~-~l   76 (308)
                      ...|+|+..+....          ..+  ....+.|+        +.|.++..+......            ..+++ ..
T Consensus         5 m~~v~ill~~g~~~----------~e~--~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~   72 (212)
T 3efe_A            5 TKKAFLYVFNTMSD----------WEY--GYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTL   72 (212)
T ss_dssp             CCCEEEEECTTCCT----------TTT--HHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCC
T ss_pred             ccEEEEEECCCccH----------HHH--HHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCc
Confidence            35688887764320          112  13456777        567788777654221            01111 12


Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.+|.|++|||.. ..     ......+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        73 ~~~D~livpGG~~-~~-----~~~~~~l~~~l~~~~~~g--k~iaaiC~G~~~La~a  121 (212)
T 3efe_A           73 ESKDLLILPGGTT-WS-----EEIHQPILERIGQALKIG--TIVAAICGATDALANM  121 (212)
T ss_dssp             CTTCEEEECCCSC-TT-----SGGGHHHHHHHHHHHHHT--CEEEEETHHHHHHHHT
T ss_pred             cCCCEEEECCCCc-cc-----cccCHHHHHHHHHHHHCC--CEEEEEcHHHHHHHHc
Confidence            3799999999963 11     122347888999988865  9999999999999876

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=96.95  E-value=0.00015  Score=62.66  Aligned_cols=45  Identities=18%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             ceeeecCCCCcc--------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        152 NLKFLPGAKRSS--------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       152 ~l~~~pg~~~~~--------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      .+.+..|+....        ....+++. ..++|+||||+|+|+|+.++|+++.
T Consensus        63 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~  116 (219)
T 1q7r_A           63 GLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDE  116 (219)
T ss_dssp             EEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCC
T ss_pred             EEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCc
Confidence            466666654321        13344443 5689999999999999999998763

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=96.91  E-value=0.0013  Score=61.76  Aligned_cols=101  Identities=18%  Similarity=0.362  Sum_probs=66.3

Q ss_pred             ccCCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------------------
Q psy12875         14 TSTDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------------------   69 (308)
Q Consensus        14 ~~~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------------------   69 (308)
                      ...+...|+|+..+...          ...+  ....+.|+++|+++..+..+...                        
T Consensus       201 ~~~~~~ki~ill~dg~~----------~~e~--~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  268 (396)
T 3uk7_A          201 ITGANKRILFLCGDYME----------DYEV--KVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHT  268 (396)
T ss_dssp             EECCCCEEEEECCTTEE----------HHHH--HHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCC
T ss_pred             chhccceEEEEecCCCc----------chhH--HHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCce
Confidence            34456789998775322          0111  24568889999998877543210                        


Q ss_pred             ----hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         70 ----EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        70 ----~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                          ..++. ....+|.|++|||..   +  ......+.+.++++++.+++  +||.+||.|.++|+.+
T Consensus       269 i~~~~~~~~~~~~~~D~livpGg~~---~--~~~~~~~~~~~~l~~~~~~~--~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          269 FALTTNFDDLVSSSYDALVIPGGRA---P--EYLALNEHVLNIVKEFMNSE--KPVASICHGQQILAAA  330 (396)
T ss_dssp             EECCSCGGGCCGGGCSEEEECCBSH---H--HHHTTCHHHHHHHHHHHHTT--CCEEEEGGGHHHHHHT
T ss_pred             eeccCCHHHCCcccCCEEEECCCcc---h--hhhccCHHHHHHHHHHHHCC--CEEEEEchHHHHHHHc
Confidence                01222 134799999999951   1  12222347888999998855  9999999999999976

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=96.91  E-value=0.0011  Score=58.32  Aligned_cols=51  Identities=14%  Similarity=0.234  Sum_probs=38.4

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.+|+|++|||....    ........+.++++++.+++  +||.+||.|..+|+.+
T Consensus       104 ~~yD~l~ipGG~g~~----~~l~~~~~l~~~l~~~~~~g--k~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          104 HDYGLMFVCGGHGAL----YDFPHAKHLQNIAQDIYKRG--GVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             GGCSEEEECCSTTHH----HHGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGGGC
T ss_pred             hhCCEEEEeCCCchh----hhcccCHHHHHHHHHHHHcC--CEEEEEChHHHHHHHh
Confidence            468999999995210    01223357888999999855  9999999999999865

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=96.88  E-value=0.0028  Score=54.04  Aligned_cols=94  Identities=12%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHc-CCeEEEEEcCCC-----------hhHHHHhcCCCCEEEEcC
Q psy12875         19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAA-GARVVPILIGQD-----------REYYAEILTQINGVVIPG   86 (308)
Q Consensus        19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~a-G~~~~~i~~~~~-----------~~~~~~~l~~~dGlilpG   86 (308)
                      ..|+|+..+...      ..    ..+  ...+.|+++ |.++..+.....           +..+++..+.+|.|++||
T Consensus         4 ~kV~ill~~g~~------~~----E~~--~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpG   71 (206)
T 3f5d_A            4 KKALFLILDQYA------DW----EGV--YLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIG   71 (206)
T ss_dssp             EEEEEECCSSBC------TT----TSH--HHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECC
T ss_pred             cEEEEEEcCCCc------HH----HHH--HHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcC
Confidence            568888775432      01    121  335677777 888777654321           001112224789999999


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         87 GGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        87 G~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      |..   +.  .  ....+.++++++.+++  +||.+||.|.++|+.+
T Consensus        72 G~~---~~--~--~~~~l~~~l~~~~~~g--k~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           72 GDS---WS--N--DNKKLLHFVKTAFQKN--IPIAAICGAVDFLAKN  109 (206)
T ss_dssp             BSC---CC--C--CCHHHHHHHHHHHHTT--CCEEEETHHHHHHHHT
T ss_pred             CCC---hh--h--cCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHc
Confidence            962   11  1  2347888899888855  9999999999999976

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.86  E-value=0.0011  Score=54.73  Aligned_cols=51  Identities=16%  Similarity=0.317  Sum_probs=38.5

Q ss_pred             CCCCEEEEcCC--CCCCCCCCchhH---HHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGG--GTGFDHPNGYAD---AGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG--~~~~~~~~~~~~---~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..+|.|++|||  .....    ...   ..+.+.++++++.+++  +||.+||.|.++|+.+
T Consensus        65 ~~~D~livpGG~~~~~~~----~l~~~~~~~~~~~~l~~~~~~g--k~i~aiC~G~~~La~a  120 (175)
T 3cne_A           65 DEFDALVFSCGDAVPVFQ----QYANQPYNVDLMEVIKTFGEKG--KMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GGCSEEEEECCTTGGGGG----GCTTCHHHHHHHHHHHHHHHTT--CEEEEETTHHHHHHHT
T ss_pred             ccCCEEEECCCcCcccHH----HHhhcccCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHC
Confidence            57899999999  31111    111   3457889999998855  9999999999999976

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=96.85  E-value=0.00025  Score=59.83  Aligned_cols=29  Identities=17%  Similarity=0.392  Sum_probs=21.9

Q ss_pred             hHhhh-cCCCCeeeeehhHHHHHHHhCCcc
Q psy12875        167 QINEE-GVTFPVLGVCLGFELILQVSNNDT  195 (308)
Q Consensus       167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~v  195 (308)
                      .+++. ..++|++|||+|||+|+.++|+++
T Consensus        64 ~i~~~~~~~~pilgIC~G~q~l~~~~gg~~   93 (196)
T 2nv0_A           64 PLREFAAQGKPMFGTCAGLIILAKEIAGSD   93 (196)
T ss_dssp             HHHHHHHTTCCEEEETHHHHHHSBCCC---
T ss_pred             HHHHHHHCCCcEEEECHHHHHHHHHhcCCC
Confidence            44443 568999999999999999999876

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=96.82  E-value=0.00088  Score=58.84  Aligned_cols=51  Identities=14%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.+|+|++|||....    ......+.+.++++++.+++  +||.+||.|..+|+.+
T Consensus        97 ~~yD~l~vpGG~~~~----~~l~~~~~l~~~l~~~~~~g--k~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           97 SDYKVFFASAGHGAL----FDYPKAKNLQDIASKIYANG--GVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GGCSEEEECCSTTHH----HHGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             hhCCEEEEcCCCchh----hhcccCHHHHHHHHHHHHcC--CEEEEECHHHHHHHHh
Confidence            468999999995210    11223357888999999855  9999999999999865

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=96.81  E-value=0.00024  Score=60.71  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             hHhhh-cCCCCeeeeehhHHHHHHHhCCcc
Q psy12875        167 QINEE-GVTFPVLGVCLGFELILQVSNNDT  195 (308)
Q Consensus       167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~v  195 (308)
                      .+++. ..++|+||||+|||+|+.++|+..
T Consensus        83 ~i~~~~~~g~PilGIC~G~QlL~~~~gg~~  112 (208)
T 2iss_D           83 KLVERINNGLPVFATCAGVILLAKRIKNYS  112 (208)
T ss_dssp             HHHHHHHTTCCEEEETHHHHHHEEEEC---
T ss_pred             HHHHHHHCCCeEEEECHHHHHHHHHcCCCC
Confidence            34443 568999999999999999999864

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=96.78  E-value=0.00021  Score=61.83  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             hHhhh-cC-CCCeeeeehhHHHHHHHhCCcccccC---CcccceeeecccccCCCC------CCcCccCC----ChhHHH
Q psy12875        167 QINEE-GV-TFPVLGVCLGFELILQVSNNDTDFRK---SCKVQQVNLNLKFLPGAK------RSSLFSQV----PSKYIK  231 (308)
Q Consensus       167 ~i~~~-~~-~~PilGiClG~Qll~~~~G~~v~~~~---~g~~~~~~~~~~~~~~~~------~~~l~~~~----~~~~~~  231 (308)
                      .+++. .. ++|+||||+|+|+|+.++|+.+....   ..................      ....+.++    +.++  
T Consensus        71 ~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~--  148 (227)
T 2abw_A           71 ALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDL--  148 (227)
T ss_dssp             HHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCEEEEEECCC----CCEEEEECEECCCCTTCCTTC--
T ss_pred             HHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCceeEEEEecCCCccccccccccccccccccCCCce--
Confidence            34433 56 89999999999999999998753210   111111111100000000      00111221    1112  


Q ss_pred             hhccCCceeeccceeeeeccccccCC-CCCeEEEEEecCC--CceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        232 KFYQKPLTHNNHIWCITRQDMIKYGL-TETWNILTLSKYK--SWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       232 ~~~~~~~v~~~H~~~v~~~~~~~~~l-~~~~~via~s~~~--~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                            ..++.|++.+..       + |++++++|+++.+  +...++|++.+  +++|+|||||++..
T Consensus       149 ------~~~~~h~~~v~~-------~~~~~~~vla~~~~~~~g~~~~~a~~~~--~v~gvQfHPE~~~~  202 (227)
T 2abw_A          149 ------TAACIRAPYIRE-------ILSDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPELLPH  202 (227)
T ss_dssp             ------EEEEESCCEEEE-------ECCTTCEEEEEEEETTTEEEEEEEEEET--TEEEESSCGGGSSC
T ss_pred             ------eEEEEEcceEee-------cCCCCcEEEEEcccccCCCCceEEEEEC--CEEEEEECCeeCCC
Confidence                  125567777653       5 7899999998631  01247788875  59999999998753

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=96.62  E-value=0.0029  Score=59.28  Aligned_cols=97  Identities=23%  Similarity=0.428  Sum_probs=63.7

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh----------------------------
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR----------------------------   69 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~----------------------------   69 (308)
                      ...|+|+..+...          ...+  ....+.|+++|+++..+.....+                            
T Consensus        12 ~~kv~ill~dg~e----------~~E~--~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~   79 (396)
T 3uk7_A           12 SRTVLILCGDYME----------DYEV--MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLN   79 (396)
T ss_dssp             CCEEEEECCTTEE----------HHHH--HHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECC
T ss_pred             CCeEEEEeCCCcc----------HHHH--HHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeecc
Confidence            4678888764321          0111  24568899999998887654210                            


Q ss_pred             hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         70 EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        70 ~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..++. ....+|.|++|||..   +  ........+.++++++.+++  +||.+||.|.++|+.+
T Consensus        80 ~~~~~~~~~~~D~livpGG~~---~--~~~~~~~~~~~~l~~~~~~~--~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           80 ATFDEVDLSKYDGLVIPGGRA---P--EYLALTASVVELVKEFSRSG--KPIASICHGQLILAAA  137 (396)
T ss_dssp             SCGGGCCGGGCSEEEECCBSH---H--HHHTTCHHHHHHHHHHHHTT--CCEEEETTTHHHHHHT
T ss_pred             CChhhcCcccCCEEEECCCcc---h--hhcccCHHHHHHHHHHHHcC--CEEEEECchHHHHHhc
Confidence            01111 135689999999952   1  11222346888899998855  9999999999999976

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=96.60  E-value=0.0025  Score=57.39  Aligned_cols=98  Identities=15%  Similarity=0.235  Sum_probs=65.6

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCC-eEEEEEcCC----ChhHHHHhcCCCCEEEEcCCCCCCC
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGA-RVVPILIGQ----DREYYAEILTQINGVVIPGGGTGFD   92 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~-~~~~i~~~~----~~~~~~~~l~~~dGlilpGG~~~~~   92 (308)
                      +|.|.+.+.-+..          .+.|. ..|.+++++.|+ .+..+....    ++.++.+.+.++|+|+++||...  
T Consensus        56 ~~~I~~IptAs~~----------~~~~~-~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~--  122 (291)
T 3en0_A           56 DAIIGIIPSASRE----------PLLIG-ERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQL--  122 (291)
T ss_dssp             GCEEEEECTTCSS----------HHHHH-HHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHH--
T ss_pred             CCeEEEEeCCCCC----------hHHHH-HHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHH--
Confidence            4788888664432          23454 467889999999 666666532    12234456778999999999520  


Q ss_pred             CCCchhHHH--HHHHHHHHHHHHcCCCccEEEechhhhHHHH
Q psy12875         93 HPNGYADAG--RQILHLVDKINEEGVTFPVLGVCLGFELILQ  132 (308)
Q Consensus        93 ~~~~~~~~~--~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~  132 (308)
                         .+.+..  ..+.+.+++++++| +.|+.|+|.|.-++..
T Consensus       123 ---~l~~~l~~t~l~~~L~~~~~~G-~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          123 ---RLCGLLADTPLMDRIRQRVHNG-EISLAGTSAGAAVMGH  160 (291)
T ss_dssp             ---HHHHHHTTCHHHHHHHHHHHTT-SSEEEEETHHHHTTSS
T ss_pred             ---HHHHHHHhCCHHHHHHHHHHCC-CeEEEEeCHHHHhhhH
Confidence               122222  25678888888843 3899999999988764

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=96.54  E-value=0.0018  Score=64.56  Aligned_cols=84  Identities=17%  Similarity=0.143  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCh---hHHHH-hcCCCCEEEEcCCCCCCCC------------CCchhHHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAGARVVPILIGQDR---EYYAE-ILTQINGVVIPGGGTGFDH------------PNGYADAGRQILHLVDKI  111 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~---~~~~~-~l~~~dGlilpGG~~~~~~------------~~~~~~~~~~~~e~~~~~  111 (308)
                      ...++|+++|+.++++......   ..+.. ....+|+||+|||...+..            .....+......++++++
T Consensus       549 ~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~  628 (688)
T 2iuf_A          549 KLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDA  628 (688)
T ss_dssp             HHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHH
Confidence            5678999999999999765421   01111 2346999999999422000            001222234688899999


Q ss_pred             HHcCCCccEEEechhhhHHHHH
Q psy12875        112 NEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       112 ~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      .+.+  +||.+||.|-++|..+
T Consensus       629 ~~~g--KpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          629 FRFG--KTVGALGSGSDALESG  648 (688)
T ss_dssp             HHHT--CEEEEEGGGHHHHHHT
T ss_pred             HHcC--CEEEEECchHHHHHHc
Confidence            9966  9999999999988866

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=96.34  E-value=0.0054  Score=55.19  Aligned_cols=79  Identities=15%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             HHHHHHHcCCeEEEEEcCCCh----------------h-------------HHHH------hcCCCCEEEEcCCCCCCCC
Q psy12875         49 YVKNIEAAGARVVPILIGQDR----------------E-------------YYAE------ILTQINGVVIPGGGTGFDH   93 (308)
Q Consensus        49 ~~~~l~~aG~~~~~i~~~~~~----------------~-------------~~~~------~l~~~dGlilpGG~~~~~~   93 (308)
                      -.+.|+++|.++.++......                .             .+++      ..+.+|+|++|||....  
T Consensus        81 p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~--  158 (291)
T 1n57_A           81 PLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGAL--  158 (291)
T ss_dssp             HHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGG--
T ss_pred             HHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchh--
Confidence            457788999999988753211                0             1122      14679999999994211  


Q ss_pred             CCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         94 PNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        94 ~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                        ......+.+.++++++.+++  ++|.+||.|..+|+.+
T Consensus       159 --~~l~~~~~l~~~l~~~~~~g--k~VaaIC~Gp~~La~a  194 (291)
T 1n57_A          159 --IGLPESQDVAAALQWAIKND--RFVISLCHGPAAFLAL  194 (291)
T ss_dssp             --SSGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGGGG
T ss_pred             --hhhhhCHHHHHHHHHHHHcC--CEEEEECccHHHHHhh
Confidence              01222357888999988855  9999999999988766

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=96.21  E-value=0.0095  Score=59.92  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=63.0

Q ss_pred             CCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEE
Q psy12875         18 TPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVI   84 (308)
Q Consensus        18 ~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlil   84 (308)
                      ...|+|+..+...          ....  ....+.|+.+|+++.++......            ..+.. ....+|+|++
T Consensus       534 ~rkVaILl~dGfe----------~~El--~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViV  601 (715)
T 1sy7_A          534 SRRVAIIIADGYD----------NVAY--DAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFI  601 (715)
T ss_dssp             TCEEEEECCTTBC----------HHHH--HHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEE
T ss_pred             CCEEEEEEcCCCC----------HHHH--HHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEE
Confidence            3568888774321          0111  24568899999999888654210            01111 1235899999


Q ss_pred             cCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         85 PGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        85 pGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      |||...  .  ........+.++++++.+++  +||.+||.|..+|+.+
T Consensus       602 PGG~~~--~--~~l~~~~~l~~~Lr~~~~~g--K~IaAIC~G~~lLA~A  644 (715)
T 1sy7_A          602 PGGAKA--A--ETLSKNGRALHWIREAFGHL--KAIGATGEAVDLVAKA  644 (715)
T ss_dssp             CCCHHH--H--HHHHTCHHHHHHHHHHHHTT--CEEEEETTHHHHHHHH
T ss_pred             cCCccc--H--hhhccCHHHHHHHHHHHhCC--CEEEEECHHHHHHHHc
Confidence            999310  0  11122246888999999855  9999999999999987

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=96.17  E-value=0.0039  Score=53.52  Aligned_cols=80  Identities=14%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCh-------------------hHH------HH-hcCCCCEEEEcCCCCCCCCCCchhHHH
Q psy12875         48 SYVKNIEAAGARVVPILIGQDR-------------------EYY------AE-ILTQINGVVIPGGGTGFDHPNGYADAG  101 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~-------------------~~~------~~-~l~~~dGlilpGG~~~~~~~~~~~~~~  101 (308)
                      ...+.|+++|+++..+......                   ..+      +. ....+|+|++|||.....    .....
T Consensus        33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~----~l~~~  108 (224)
T 1u9c_A           33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMF----DFPDN  108 (224)
T ss_dssp             HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHH----HSTTC
T ss_pred             HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHH----HhhcC
Confidence            3467888999999888654211                   001      11 124799999999952100    01123


Q ss_pred             HHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875        102 RQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       102 ~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..+.++++++.+++  +||.+||.|.++|+.+
T Consensus       109 ~~l~~~l~~~~~~~--k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A          109 ETLQYVLQQFAEDG--RIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             HHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             HHHHHHHHHHHHCC--CEEEEEChHHHHHHHc
Confidence            47888999988855  9999999999999866

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=96.15  E-value=0.0016  Score=54.55  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=51.3

Q ss_pred             HHHHHHH-cCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         49 YVKNIEA-AGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        49 ~~~~l~~-aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      ..+.|++ .|.++..+......            ..+++ ..+.+|+|++|||.. .     .......+.++++++.++
T Consensus        20 ~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~-~-----~~~~~~~l~~~l~~~~~~   93 (188)
T 2fex_A           20 LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-W-----EKGTAADLGGLVKRFRDR   93 (188)
T ss_dssp             HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-H-----HHTCCCCCHHHHHHHHHT
T ss_pred             HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCc-c-----cccccHHHHHHHHHHHHC
Confidence            3577777 89888877654210            01111 123789999999952 0     101112567888888885


Q ss_pred             CCCccEEEechhhhHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~  133 (308)
                      +  +||.+||.|.++|+.+
T Consensus        94 ~--k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           94 D--RLVAGICAAASALGGT  110 (188)
T ss_dssp             T--CEEEEETHHHHHHHHT
T ss_pred             C--CEEEEECHHHHHHHHC
Confidence            4  9999999999999976

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=96.07  E-value=0.017  Score=49.09  Aligned_cols=51  Identities=10%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchh--HHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYA--DAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~--~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +..+|.|++|||..   +  ...  ...+.+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        72 ~~~~D~livpGg~~---~--~~~~~~~~~~l~~~l~~~~~~g--~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           72 FDFTNILIIGSIGD---P--LESLDKIDPALFDWIRELHLKG--SKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             CSCCSEEEECCCSC---H--HHHGGGSCHHHHHHHHHHHHTT--CEEEEETTHHHHHHHH
T ss_pred             cCCCCEEEECCCCC---c--hhhhccCCHHHHHHHHHHHhcC--CEEEEEcHHHHHHHHc
Confidence            46799999999952   1  111  12357889999988855  9999999999999987

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=96.07  E-value=0.0097  Score=52.42  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=60.2

Q ss_pred             CEEEEeccccCCCCcccccCCCCccchHHHHHHHH-HHcCCeEEEEEcCCCh------------hHHHHhcCCCCEEEEc
Q psy12875         19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNI-EAAGARVVPILIGQDR------------EYYAEILTQINGVVIP   85 (308)
Q Consensus        19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l-~~aG~~~~~i~~~~~~------------~~~~~~l~~~dGlilp   85 (308)
                      ..|+|+..+...          ..++  ....+.| +..|.++..+......            ..+++....+|.|++|
T Consensus        24 ~~I~ill~~gf~----------~~e~--~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVP   91 (253)
T 3ewn_A           24 EQIAMLVYPGMT----------VMDL--VGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAP   91 (253)
T ss_dssp             CEEEEECCTTBC----------HHHH--HHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEEC
T ss_pred             eEEEEEeCCCCc----------HHHH--HHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEEC
Confidence            488988775432          0111  1345667 5678888877654211            0111122346999999


Q ss_pred             CCC-CCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         86 GGG-TGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        86 GG~-~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ||. .   .  ........+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        92 GG~~g---~--~~l~~~~~l~~~Lr~~~~~g--k~IaaICtG~~lLa~A  133 (253)
T 3ewn_A           92 GGTDG---T--LAAASDAETLAFMADRGARA--KYITSVCSGSLILGAA  133 (253)
T ss_dssp             CBSHH---H--HHHTTCHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred             CCccc---h--hhhccCHHHHHHHHHHHHcC--CEEEEEChHHHHHHHc
Confidence            984 1   0  01112347889999988855  9999999999999876

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.01  E-value=0.0011  Score=65.00  Aligned_cols=39  Identities=23%  Similarity=0.433  Sum_probs=28.0

Q ss_pred             ceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHh
Q psy12875        152 NLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVS  191 (308)
Q Consensus       152 ~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~  191 (308)
                      .+.+ ||++.+.          ....+++. ..++|+||||+|||+|+.++
T Consensus        47 glIL-pGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~   96 (555)
T 1jvn_A           47 RLIL-PGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAGS   96 (555)
T ss_dssp             CEEE-EECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEE
T ss_pred             EEEE-CCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhhh
Confidence            4555 8876643          12344443 56899999999999999988

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=95.94  E-value=0.007  Score=50.99  Aligned_cols=79  Identities=15%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             HHHHHHHcCCeEEEEEcCCCh------------------hH---HHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHH
Q psy12875         49 YVKNIEAAGARVVPILIGQDR------------------EY---YAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHL  107 (308)
Q Consensus        49 ~~~~l~~aG~~~~~i~~~~~~------------------~~---~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~  107 (308)
                      -.+.|+++|..+..+......                  ++   .+...+++|+|++|||...  +  ...+..+.+.++
T Consensus        23 p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPGG~~~--~--~~l~~~~~l~~~   98 (194)
T 4gdh_A           23 PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLG--A--KTLSTTPFVQQV   98 (194)
T ss_dssp             HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECCCHHH--H--HHHHTCHHHHHH
T ss_pred             HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECCCchh--H--hHhhhCHHHHHH
Confidence            357889999888766543210                  00   1112346899999999310  0  112223467888


Q ss_pred             HHHHHHcCCCccEEEechhhhHHHH
Q psy12875        108 VDKINEEGVTFPVLGVCLGFELILQ  132 (308)
Q Consensus       108 ~~~~~~~g~~~PvlGIC~G~Qll~~  132 (308)
                      ++++.++ .++++..||.|..++..
T Consensus        99 l~~~~~~-~~k~iaaiC~g~~l~~a  122 (194)
T 4gdh_A           99 VKEFYKK-PNKWIGMICAGTLTAKT  122 (194)
T ss_dssp             HHHHTTC-TTCEEEEEGGGGHHHHH
T ss_pred             HHHhhhc-CCceEEeecccccchhh
Confidence            8887764 24899999999855443

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=95.82  E-value=0.0066  Score=51.46  Aligned_cols=49  Identities=16%  Similarity=0.228  Sum_probs=38.8

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ...+|.|++|||... ..    ..  ..+.++++++.+++  ++|.+||-|..+|+.+
T Consensus        69 ~~~~D~livpGG~~~-~~----~~--~~l~~~l~~~~~~g--~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           69 LKELDLLVVCGGLRT-PL----KY--PELDRLLNDCAAHG--MALGGLWNGAWFLGRA  117 (202)
T ss_dssp             GTTCSEEEEECCTTC-CS----CC--TTHHHHHHHHHHHT--CEEEEETTHHHHHHHH
T ss_pred             CCCCCEEEEeCCCch-hh----cc--HHHHHHHHHHHhhC--CEEEEECHHHHHHHHc
Confidence            467999999999632 11    11  56788888888865  9999999999999987

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=95.79  E-value=0.0036  Score=54.68  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=38.0

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +++|+|++|||....    ......+.+.++++++.+++  +||.+||.|..+|+.+
T Consensus        97 ~~~D~livpGG~~~~----~~l~~~~~l~~~l~~~~~~g--k~vaaIC~G~~~La~a  147 (243)
T 1rw7_A           97 DDYQIFFASAGHGTL----FDYPKAKDLQDIASEIYANG--GVVAAVCHGPAIFDGL  147 (243)
T ss_dssp             GGEEEEEECCSTTHH----HHGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             hhCcEEEECCCCCch----hhcccCHHHHHHHHHHHHcC--CEEEEECCCHHHHHhc
Confidence            368999999995210    01122347888999988855  9999999999998876

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=95.53  E-value=0.0046  Score=52.49  Aligned_cols=34  Identities=15%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             hhhHhhh-cCCCCeeeeehhHHHHHHH--hCCccccc
Q psy12875        165 FSQINEE-GVTFPVLGVCLGFELILQV--SNNDTDFR  198 (308)
Q Consensus       165 ~~~i~~~-~~~~PilGiClG~Qll~~~--~G~~v~~~  198 (308)
                      ...+++. ..++|++|||+|+|+|+.+  +++++.+.
T Consensus        69 ~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~  105 (213)
T 3d54_D           69 AFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQN  105 (213)
T ss_dssp             HHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECC
T ss_pred             HHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecC
Confidence            4455543 4689999999999999999  88887653

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=95.22  E-value=0.0053  Score=55.53  Aligned_cols=23  Identities=17%  Similarity=0.117  Sum_probs=19.1

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      ...+|+||||+|||+++.++||.
T Consensus       133 ~~~~~~lgIC~GaQ~~l~~~~G~  155 (301)
T 2vdj_A          133 TNVTSTLHICWGAQAGLYHHYGV  155 (301)
T ss_dssp             HHEEEEEEETHHHHHHHHHHHCC
T ss_pred             HcCCcEEEEcHHHHHHHHHhCCC
Confidence            46889999999999977776663

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=95.16  E-value=0.018  Score=49.90  Aligned_cols=97  Identities=16%  Similarity=0.129  Sum_probs=60.5

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHH-cCCeEEEEEcCCCh------------hHHHHhcCCCCEEE
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEA-AGARVVPILIGQDR------------EYYAEILTQINGVV   83 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-aG~~~~~i~~~~~~------------~~~~~~l~~~dGli   83 (308)
                      |...|+|+..+.-.          ..++  ....+.|+. .|.++..+......            ..++ .+..+|.|+
T Consensus         4 m~~~V~ill~~gf~----------~~e~--~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~-~~~~~D~li   70 (231)
T 3noq_A            4 MAVQIGFLLFPEVQ----------QLDL--TGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFA-DCPPLDVIC   70 (231)
T ss_dssp             CCEEEEEECCTTCC----------HHHH--HHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETT-TCCCCSEEE
T ss_pred             CcEEEEEEEeCCCc----------HHHH--HHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChh-HCCcCCEEE
Confidence            34678888775432          0111  134567776 67777666432210            0111 235789999


Q ss_pred             EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +|||.. .    ........+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        71 vpGG~g-~----~~~~~~~~l~~~lr~~~~~g--~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           71 IPGGTG-V----GALMEDPQALAFIRQQAARA--RYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             ECCSTT-H----HHHTTCHHHHHHHHHHHTTC--SEEEEETTHHHHHHHT
T ss_pred             ECCCCC-h----hhhccCHHHHHHHHHHHhcC--CEEEEECHHHHHHHHc
Confidence            999952 1    11112347889999988855  9999999999999876

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=95.13  E-value=0.0058  Score=55.50  Aligned_cols=23  Identities=9%  Similarity=0.020  Sum_probs=19.5

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNND  194 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~  194 (308)
                      ...+|+||||+|||+++.++||.
T Consensus       145 ~~~~p~LGIC~GaQ~~l~~~~G~  167 (312)
T 2h2w_A          145 HNVYSTMFICWAAQAGLYYFYGI  167 (312)
T ss_dssp             HHEEEEEEETHHHHHHHHHHHCC
T ss_pred             HcCCcEEEECHHHHHHHHHhCCC
Confidence            46899999999999977777764

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=95.08  E-value=0.011  Score=50.51  Aligned_cols=50  Identities=16%  Similarity=0.337  Sum_probs=37.5

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ..+|.|++|||..   +  ........+.++++++.+++  ++|.+||.|..+|+.+
T Consensus        64 ~~~D~livpGG~~---~--~~~~~~~~~~~~l~~~~~~~--k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           64 NIEKILFVPGGSG---T--REKVNDDNFINFIGNMVKES--KYIISVCTGSALLSKA  113 (211)
T ss_dssp             SSEEEEEECCSTH---H--HHHTTCHHHHHHHHHHHHHC--SEEEECTTHHHHHHHT
T ss_pred             CCCCEEEECCCcc---h--hhhcCCHHHHHHHHHHHHcC--CEEEEEchHHHHHHhc
Confidence            3579999999951   1  11112246888999988865  9999999999999976

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.49  E-value=0.02  Score=53.16  Aligned_cols=96  Identities=23%  Similarity=0.338  Sum_probs=62.2

Q ss_pred             CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh---------h-----HHHH-hcCCCCEEE
Q psy12875         19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR---------E-----YYAE-ILTQINGVV   83 (308)
Q Consensus        19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~---------~-----~~~~-~l~~~dGli   83 (308)
                      ..|+|+..+...          ...+  ....+.|+.+|+++..+......         .     .++. ....+|.|+
T Consensus        11 kkV~ILl~dgf~----------~~El--~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLi   78 (365)
T 3fse_A           11 KKVAILIEQAVE----------DTEF--IIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVV   78 (365)
T ss_dssp             CEEEEECCTTBC----------HHHH--HHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEE
T ss_pred             eEEEEEECCCCc----------HHHH--HHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEE
Confidence            468888765322          0111  24568889999998887654321         0     0111 112589999


Q ss_pred             EcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         84 IPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        84 lpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +|||..   +  ........+.++++++.+++  +||.+||.|..+|+.+
T Consensus        79 VPGG~g---~--~~l~~~~~l~~~Lr~~~~~g--k~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           79 IPGGMA---P--DKMRRNPNTVRFVQEAMEQG--KLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             ECCBTH---H--HHHTTCHHHHHHHHHHHHTT--CEEEEETTTHHHHHHT
T ss_pred             EECCcc---h--hhccCCHHHHHHHHHHHHCC--CEEEEECHHHHHHHHc
Confidence            999951   1  11122347888999998855  9999999999999976

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=88.53  E-value=0.12  Score=44.77  Aligned_cols=51  Identities=14%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             cCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         76 LTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        76 l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ...+|.|++|||...  .  ......+.+.+++  +.+++ +++|.+||.|..+|+.+
T Consensus        78 ~~~~D~liVPGG~~g--~--~~l~~~~~l~~~L--~~~~~-~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           78 VKEQDVVLITSGYRG--I--PAALQDENFMSAL--KLDPS-RQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             GGGCSEEEECCCTTH--H--HHHHTCHHHHHHC--CCCTT-TCEEEEETTHHHHHHHT
T ss_pred             ccCCCEEEEcCCccC--H--hhhccCHHHHHHH--HhCCC-CCEEEEEcHHHHHHHHc
Confidence            467899999999211  0  0111123566666  33432 23999999999999976

>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A

Probab=86.70  E-value=0.88  Score=36.97  Aligned_cols=70  Identities=7%  Similarity=0.066  Sum_probs=39.5

Q ss_pred             cCCCCEEEEeccccCCCCcccccCCC-CccchHHHHHHHHHHcCCeEEEEE-cCCChhHHH----Hhc-CCCCEEEEcCC
Q psy12875         15 STDTPVIGILAQEYTHIPSYVKAYPN-YTSYIAASYVKNIEAAGARVVPIL-IGQDREYYA----EIL-TQINGVVIPGG   87 (308)
Q Consensus        15 ~~~~P~IGI~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~l~~aG~~~~~i~-~~~~~~~~~----~~l-~~~dGlilpGG   87 (308)
                      ++.+|.++|++.-+..    .  .+. .++ -...+..+|+++|+++.... ..++ +.+.    +.+ +++|-||.+||
T Consensus         4 ~~~~~rv~ii~tGdEl----~--~G~i~Ds-n~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG   75 (164)
T 3pzy_A            4 SMTTRSARVIIASTRA----S--SGEYEDR-CGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG   75 (164)
T ss_dssp             ---CCEEEEEEECHHH----H--C----CC-HHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred             CCCCCEEEEEEECCCC----C--CCceeeH-HHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence            4678999999875432    0  111 121 12245678899999876432 2334 4443    334 37999999999


Q ss_pred             CCCCCC
Q psy12875         88 GTGFDH   93 (308)
Q Consensus        88 ~~~~~~   93 (308)
                      -+ ..+
T Consensus        76 ~s-~g~   80 (164)
T 3pzy_A           76 TG-IAP   80 (164)
T ss_dssp             CS-SST
T ss_pred             CC-CCC
Confidence            74 444

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=84.93  E-value=0.34  Score=41.68  Aligned_cols=19  Identities=16%  Similarity=0.046  Sum_probs=16.7

Q ss_pred             cCCCCeeeeehhHHHHHHH
Q psy12875        172 GVTFPVLGVCLGFELILQV  190 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~  190 (308)
                      ...+|++|+|.|+|+++..
T Consensus       111 ~~G~p~~G~sAG~~~l~~~  129 (229)
T 1fy2_A          111 KRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HTTCEEEEETHHHHHTSSB
T ss_pred             HcCCEEEEECHHHHhhccc
Confidence            4579999999999999874

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=83.63  E-value=0.37  Score=40.82  Aligned_cols=18  Identities=11%  Similarity=0.030  Sum_probs=15.9

Q ss_pred             cCCCCeeeeehhHHHHHH
Q psy12875        172 GVTFPVLGVCLGFELILQ  189 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~  189 (308)
                      ...+|++|+|.|+|+++.
T Consensus       111 ~~G~p~~G~sAGa~~l~~  128 (206)
T 3l4e_A          111 AAGKLYIGESAGAVITSP  128 (206)
T ss_dssp             HTTCEEEEETHHHHTTSS
T ss_pred             HcCCeEEEECHHHHHhcc
Confidence            457899999999999976

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=83.34  E-value=0.35  Score=51.81  Aligned_cols=28  Identities=14%  Similarity=0.108  Sum_probs=24.1

Q ss_pred             EEEEEEecCCCEEEEeecCCccCcccCC
Q psy12875        274 FVSTVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       274 ~v~ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      -|++|-..+.+++|...|||+....|-.
T Consensus      1251 ~IaGi~s~~Grvlg~MpHPEr~~~~~~~ 1278 (1303)
T 3ugj_A         1251 GITAVTTENGRVTIMMPHPERVFRTVAN 1278 (1303)
T ss_dssp             GEEEEECTTSSEEEESSBGGGSSBGGGC
T ss_pred             hceEeECCCCCEEEEcCChHHccccccc
Confidence            3889999999999999999999776644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	9e-25
d1jvna2	232	c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain	2e-05
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	2e-04
d1k9vf_	200	c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i	3e-04
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	5e-04
d1ka9h_	195	c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i	0.003

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 9e-25
 Identities = 79/292 (27%), Positives = 116/292 (39%), Gaps = 66/292 (22%)

Query: 19  PVIGILAQEYTHIPSYVKAYPNYT-SYIAASYVKNIEAAGARVVPILIGQDREYYAEILT 77
           P+IGIL Q         K   NY   YIAASYVK +E+AGARVVP+ +    +       
Sbjct: 4   PIIGILMQ-----KCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKD------ 52

Query: 78  QINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNND 137
                                        L   IN  G+ FP   V L      +V+   
Sbjct: 53  --------------------------YEILFKSIN--GILFPGGSVDLRRSDYAKVAKIF 84

Query: 138 TDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF 197
            +                           Q  ++G  FPV G CLGFE +  + + +   
Sbjct: 85  YNLSI------------------------QSFDDGDYFPVWGTCLGFEELSLLISGECLL 120

Query: 198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKY-G 256
                   V + L F  G   S +F   P++ +     +PLT N H W ++ ++      
Sbjct: 121 TA-TDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEK 179

Query: 257 LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS 308
           L + +N+LT +     EF+ST+E  +YP+ G+Q+HPEK  YEW       H+
Sbjct: 180 LKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHA 231

>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 240 HNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEK 294
           +  H +        K  L      +  +KY S EF++ V      I   QFHPEK
Sbjct: 147 YFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN--NIFATQFHPEK 199

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 26/118 (22%)

Query: 176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQ 235
           PV G+CLG +L+   S       K+ K++  +            ++       +     +
Sbjct: 112 PVFGICLGHQLLALASGA-----KTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDE 166

Query: 236 KPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 293
             L  N  +   +  D                       +  +   + P    Q +PE
Sbjct: 167 ATLPANLRVTHKSLFDGT---------------------LQGIHRTDKPAFSFQGNPE 203

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 222 FSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK 281
             ++P     +   K    N + +           + E  ++L  ++Y    F S V   
Sbjct: 115 SRRLPHMGWNEVIFKDTFPNGYYYF----VHTYRAVCEEEHVLGTTEYDGEIFPSAVRKG 170

Query: 282 EYPIVGIQFHPEK----------NAYEWTESQ 303
              I+G QFHPEK             E + S+
Sbjct: 171 --RILGFQFHPEKSSKIGRKLLEKVIECSLSR 200

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)

Query: 176 PVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQ 235
           P+LGVCLG + I           +     +++  +         SL+  +  ++    Y 
Sbjct: 79  PILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNN--SPLSLYYGIAKEFKATRY- 135

Query: 236 KPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPE 293
               H+  +  + R  ++     E   I              + H+EYPI G+QFHPE
Sbjct: 136 ----HSLVVDEVHRPLIVDAISAEDNEI------------MAIHHEEYPIYGVQFHPE 177

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 3/67 (4%)

Query: 228 KYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG 287
           +      +                   YG    +++          F + +  +   ++ 
Sbjct: 116 QMGWNALEFGGAFAPLTGRHFYFANSYYGPLTPYSLGKGEYE-GTPFTALLAKE--NLLA 172

Query: 288 IQFHPEK 294
            QFHPEK
Sbjct: 173 PQFHPEK 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	100.0
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.95
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.94
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.93
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.93
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.92
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.91
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.89
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.87
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.86
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.85
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.84
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.83
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.81
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.8
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.72
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.55
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.37
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	98.96
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	98.68
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	98.63
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	98.62
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	98.36
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.35
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	98.12
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	97.88
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	97.74
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.62
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	97.53
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	97.49
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	97.44
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	97.3
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	97.28
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	97.2
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	97.05
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	96.95
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	96.86
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	96.76
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	96.54
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	96.53
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	96.52
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	96.51
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	95.99
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	95.62
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	95.3
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	88.62

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=322.41  Aligned_cols=229  Identities=33%  Similarity=0.593  Sum_probs=186.6

Q ss_pred             CCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCc
Q psy12875         17 DTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNG   96 (308)
Q Consensus        17 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~   96 (308)
                      .||+|||+++++...    .......+||+++|+++++++|++|+++|++.+.++++..++.+||||+|||+.++++. .
T Consensus         2 ~kPiIGI~~~~~~~~----~~~~~~~~yi~~sYvk~ie~aGa~vvpi~~~~~~~~~~~~l~~idGillpGG~~~~~~~-~   76 (288)
T d1l9xa_           2 KKPIIGILMQKCRNK----VMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRS-D   76 (288)
T ss_dssp             CCCEEEEECEECCSH----HHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTC-H
T ss_pred             CCCEEEEeCCcccCc----ccccchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHhhcCCeEecCCCCCcccc-c
Confidence            689999999987641    11222468999999999999999999999999988888889999999999999888885 7


Q ss_pred             hhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCC
Q psy12875         97 YADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFP  176 (308)
Q Consensus        97 ~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~P  176 (308)
                      |.+..+++++++....+.++++||||||+|||+|+.+ +||++.++..+..+....+.+                     
T Consensus        77 ~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~-~gG~~~~~~~~~~~~~~~~~~---------------------  134 (288)
T d1l9xa_          77 YAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL-ISGECLLTATDTVDVAMPLNF---------------------  134 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH-HHSSCCCEEEEEEEEEECCEE---------------------
T ss_pred             ccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH-hCCEeeccccCcCCcceeEEe---------------------
Confidence            8888889999988877777789999999999999999 999876544321111000000                     


Q ss_pred             eeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccC
Q psy12875        177 VLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYG  256 (308)
Q Consensus       177 ilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~  256 (308)
                                                          ......+.++...+..+...+.+...++++|+++|.+..+....
T Consensus       135 ------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~H~~~v~~~~~~~~~  178 (288)
T d1l9xa_         135 ------------------------------------TGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNE  178 (288)
T ss_dssp             ------------------------------------CSTTTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCH
T ss_pred             ------------------------------------cCCCccceeEeecccchhhhccCCceEEEecccEEEecccchhh
Confidence                                                01123566888888887777888888999999999876654333


Q ss_pred             -CCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccCcccCCCCCCCCC
Q psy12875        257 -LTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNAYEWTESQHNPHS  308 (308)
Q Consensus       257 -l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~~~~~~~~~~~~~  308 (308)
                       ++++++++|++.|+..|+|++++++++|+||+|||||++.+||.+...+||+
T Consensus       179 ~l~~~~~v~a~s~d~~~e~I~~ie~~~~pi~GvQfHPEk~~fE~~~~~~~~H~  231 (288)
T d1l9xa_         179 KLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHA  231 (288)
T ss_dssp             HHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCC
T ss_pred             hcCCceEEEEEECCCCeEEEEEEEcCCCcEEEEEcCCCCCCcccccCCCCCCC
Confidence             7899999999988888999999999999999999999999999998889996

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=4.3e-28  Score=207.23  Aligned_cols=167  Identities=22%  Similarity=0.356  Sum_probs=118.8

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEE
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVL  121 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~Pvl  121 (308)
                      ++|+ .++.++|++.|+.++++|++.+..    .++++||||++||+.+...   ...+.+.+.++   ..+  .++|+|
T Consensus        11 ~~~~-~~i~r~l~~lg~~~~i~~~d~~~~----~~~~~dgiIl~Gg~~~~~~---~~~~~~~l~~~---~~~--~~~Pil   77 (196)
T d2a9va1          11 GQWT-HREWRVLRELGVDTKIVPNDIDSS----ELDGLDGLVLSGGAPNIDE---ELDKLGSVGKY---IDD--HNYPIL   77 (196)
T ss_dssp             CCTT-CHHHHHHHHTTCBCCEEETTSCGG----GGTTCSEEEEEEECSCGGG---TGGGHHHHHHH---HHH--CCSCEE
T ss_pred             CcHH-HHHHHHHHHCCCeEEEEeCCCCHH----HHhcCCcEEEecccccccc---ccchhhhHHHH---Hhh--cCceEE
Confidence            3443 367899999999999999765544    4788999999998643322   12222233333   334  459999


Q ss_pred             EechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCc
Q psy12875        122 GVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSC  201 (308)
Q Consensus       122 GIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g  201 (308)
                      |||+|||+|+.+ +||+.......         .                      .|.                     
T Consensus        78 GIC~G~Qll~~~-~gg~~~~~~~~---------~----------------------~~~---------------------  104 (196)
T d2a9va1          78 GICVGAQFIALH-FGASVVKAKHP---------E----------------------FGK---------------------  104 (196)
T ss_dssp             EETHHHHHHHHH-TTCEEEEEEEE---------E----------------------EEE---------------------
T ss_pred             Eeehhhhhhhhc-ccccccccccc---------c----------------------ccc---------------------
Confidence            999999999999 99976422100         0                      000                     


Q ss_pred             ccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEec
Q psy12875        202 KVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHK  281 (308)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~  281 (308)
                        ..+..       ...+++|++++..+.+        +++|++.+..       +|++++++|+++++.   ++|++++
T Consensus       105 --~~~~~-------~~~~~l~~~~~~~~~~--------~~~H~~~v~~-------~~~~~~v~a~~~~~~---v~ai~~~  157 (196)
T d2a9va1         105 --TKVSV-------MHSENIFGGLPSEITV--------WENHNDEIIN-------LPDDFTLAASSATCQ---VQGFYHK  157 (196)
T ss_dssp             --EEEEE-------SCCCGGGTTCCSEEEE--------EEEEEEEEES-------CCTTEEEEEECSSCS---CSEEEES
T ss_pred             --ceEEE-------ecCCccccCCCCceEE--------EecceeEEEe-------CCCccceeecccccc---hheEEEC
Confidence              00000       2366788888776653        8899999874       899999999998887   6699999


Q ss_pred             CCCEEEEeecCCccCcccCC
Q psy12875        282 EYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       282 ~~p~~GvQFHPE~~~~~~~~  301 (308)
                      ++|+||+|||||+..++.|.
T Consensus       158 ~~~i~gvQfHPE~~~s~~G~  177 (196)
T d2a9va1         158 TRPIYATQFHPEVEHTQYGR  177 (196)
T ss_dssp             SSSEEEESSCTTSTTSTTHH
T ss_pred             CCCEEEEEeCcccCCCccHH
Confidence            99999999999998887663

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=2.3e-25  Score=189.80  Aligned_cols=176  Identities=20%  Similarity=0.270  Sum_probs=116.4

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCC-ChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQ-DREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVT  117 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~-~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  117 (308)
                      ++++||+. .+++.|++.|+++++++.+. +.++++.  ..+|||+++||+.+...     .........+.++++  .+
T Consensus         8 D~~dsft~-Ni~~~l~~lG~~~~vi~~d~~~~~~i~~--~~~~gvilsgGp~~~~~-----~~~~~~~~~i~~~~~--~~   77 (195)
T d1qdlb_           8 DNYDSFVY-NIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLIISPGPGTPEK-----REDIGVSLDVIKYLG--KR   77 (195)
T ss_dssp             ECSCSSHH-HHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEECCCSSCTTS-----HHHHTTHHHHHHHHT--TT
T ss_pred             ECCCchHH-HHHHHHHhCCCeEEEEeCCCCCHHHHHh--hCCCccccCCCCCcccc-----ccccccchhhhhhhc--CC
Confidence            45677753 67889999999999998754 3333332  26899999998743322     111112223444555  35


Q ss_pred             ccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        118 FPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      +|+||||+|||+|+.+ +||.+.+.....                                                   
T Consensus        78 ~PiLGIClG~Qll~~~-~G~~v~~~~~~~---------------------------------------------------  105 (195)
T d1qdlb_          78 TPILGVCLGHQAIGYA-FGAKIRRARKVF---------------------------------------------------  105 (195)
T ss_dssp             SCEEEETHHHHHHHHH-TTCEEEEEEEEE---------------------------------------------------
T ss_pred             CCEEEeehhhhhhhhc-cCCEEEeecccc---------------------------------------------------
Confidence            9999999999999999 999874321100                                                   


Q ss_pred             cCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEe-cCCCceEEE
Q psy12875        198 RKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLS-KYKSWEFVS  276 (308)
Q Consensus       198 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s-~~~~~~~v~  276 (308)
                        ++....+.+.     ......+|.+++..+.+        +++|++.+..       .+..+.+++.+ .++.   ++
T Consensus       106 --~~~~~~~~~~-----~~~~~~lf~~~~~~~~~--------~~~h~~~~~~-------~~~~~~~~~~~~~~~~---i~  160 (195)
T d1qdlb_         106 --HGKISNIILV-----NNSPLSLYYGIAKEFKA--------TRYHSLVVDE-------VHRPLIVDAISAEDNE---IM  160 (195)
T ss_dssp             --EEEEEEEEEC-----CSSCCSTTTTCCSEEEE--------EEEEEEEEEC-------CCTTEEEEEEESSSCC---EE
T ss_pred             --cccccccccc-----cccccccccCCCcccee--------eecceeeeec-------cccCcccceeccCCCc---EE
Confidence              0001111110     02345688888876654        8899988763       56667676655 4444   88


Q ss_pred             EEEecCCCEEEEeecCCccCcccCC
Q psy12875        277 TVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       277 ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      |++++++|+||+|||||++.++.|.
T Consensus       161 ai~~~~~~i~GvQFHPE~~~s~~G~  185 (195)
T d1qdlb_         161 AIHHEEYPIYGVQFHPESVGTSLGY  185 (195)
T ss_dssp             EEEESSSSEEEESSBTTSTTCTTHH
T ss_pred             EEEECCCCEEEEEcCCCCCCCcchH
Confidence            9999999999999999999988774

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.93  E-value=7.3e-26  Score=192.70  Aligned_cols=171  Identities=16%  Similarity=0.199  Sum_probs=116.6

Q ss_pred             CCCccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhc--CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC
Q psy12875         39 PNYTSYIAASYVKNIEAAGARVVPILIGQDREYYAEIL--TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGV  116 (308)
Q Consensus        39 ~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l--~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~  116 (308)
                      +++|||. ..+++.|++.|+.+++++.+...+...+.+  .+.|+|+++||+.+...   ..     ....+++.++  .
T Consensus         7 D~~DSFt-~ni~~~l~~lG~~~~v~~~~~~~~~~~~~l~~~~~~~iils~Gpg~~~~---~~-----~~~~i~~~l~--~   75 (192)
T d1i7qb_           7 DNVDSFT-YNLVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSE---AG-----CMPELLQRLR--G   75 (192)
T ss_dssp             ECSCSSH-HHHHHHHHHTTCEEEEEETTSCHHHHHHHHHHCSSEEEEECCCSSCGGG---ST-----THHHHHHHHB--T
T ss_pred             ECCCcHH-HHHHHHHHHCCCeEEEEeCCCcccccHHHHHhcCCCeEEecCccccccc---cc-----cchhhHHhhh--c
Confidence            4567775 367899999999999999876654333322  36799999777633211   11     1122344455  3


Q ss_pred             CccEEEechhhhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCccc
Q psy12875        117 TFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTD  196 (308)
Q Consensus       117 ~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~  196 (308)
                      ++||||||+|||+|+.+ +||++.+...                               +.                   
T Consensus        76 ~iPiLGIClG~Q~la~~-~Gg~v~~~~~-------------------------------~~-------------------  104 (192)
T d1i7qb_          76 QLPIIGICLGHQAIVEA-YGGQVGQAGE-------------------------------IL-------------------  104 (192)
T ss_dssp             TBCEEEETHHHHHHHHH-TTCEEEEEEE-------------------------------EE-------------------
T ss_pred             CccEEeeeHHHHHHHHH-CCCeEEECCc-------------------------------cc-------------------
Confidence            59999999999999999 9998743210                               00                   


Q ss_pred             ccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEE
Q psy12875        197 FRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVS  276 (308)
Q Consensus       197 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~  276 (308)
                         +|....+.        ..++.+|.+.+..+.        ++++|++.+..       +++.++++|++++    .++
T Consensus       105 ---~g~~~~~~--------~~~~~l~~~~~~~~~--------~~~~h~~~~~~-------~~~~~~~~a~~~~----~i~  154 (192)
T d1i7qb_         105 ---HGKASAIA--------HDGEGMFAGMANPLP--------VARYHSLVGSN-------IPADLTVNARFGE----MVM  154 (192)
T ss_dssp             ---EEEEEEEE--------ECCCGGGTTCCSSEE--------EEEEEEEEEES-------CCTTSEEEEEETT----EEE
T ss_pred             ---ccceEEEe--------ecCCCceeeccccce--------EEeeccccccc-------ccceeeeecCCCC----eeE
Confidence               01011111        135567777765543        48899998874       8899999997643    388


Q ss_pred             EEEecCCCEEEEeecCCccCcccCC
Q psy12875        277 TVEHKEYPIVGIQFHPEKNAYEWTE  301 (308)
Q Consensus       277 ai~~~~~p~~GvQFHPE~~~~~~~~  301 (308)
                      |++++++|+||+|||||+..+++|.
T Consensus       155 ai~~~~~~i~GvQFHPEs~~t~~G~  179 (192)
T d1i7qb_         155 AVRDDRRRVCGFQFHPESILTTHGA  179 (192)
T ss_dssp             EEEETTTTEEEESSCTTSTTSTTHH
T ss_pred             EEEECCCCEEEEEeCCCcCCCCChH
Confidence            9999999999999999998888764

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.5e-25  Score=192.87  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=117.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      ++.++|++.|.++..+.....+ .++..++++||||++||+.++... ....+.+.+.++++++.+.+  +||||||+||
T Consensus        19 ~~~~~l~~~g~~~~~~~~~~~~-~~p~~l~~~d~iii~Ggp~~~~d~-~~~~~~~~~~~~i~~~~~~~--~PilGIC~G~   94 (230)
T d1o1ya_          19 MMEDIFREKNWSFDYLDTPKGE-KLERPLEEYSLVVLLGGYMGAYEE-EKYPFLKYEFQLIEEILKKE--IPFLGICLGS   94 (230)
T ss_dssp             HHHHHHHHTTCEEEEECGGGTC-CCSSCGGGCSEEEECCCSCCTTCT-TTCTHHHHHHHHHHHHHHHT--CCEEEETHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCCC-cCCcchhhCCEEEEcCCCcccccc-hhhhhhHHHHHHHHHHHHhc--ceEEEeecCH
Confidence            4578999999999887654322 233356789999999998665542 22245567778888888854  9999999999


Q ss_pred             hHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceee
Q psy12875        128 ELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVN  207 (308)
Q Consensus       128 Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~  207 (308)
                      |+|+.+ +||++.+..                              +.|..|+.            .+..          
T Consensus        95 Qlla~a-lGg~V~~~~------------------------------~~~~~~~~------------~~~~----------  121 (230)
T d1o1ya_          95 QMLAKV-LGASVYRGK------------------------------NGEEIGWY------------FVEK----------  121 (230)
T ss_dssp             HHHHHH-TTCCEEECT------------------------------TCCEEEEE------------EEEE----------
T ss_pred             HHHHHH-hcccccccc------------------------------cccccccc------------cccc----------
Confidence            999999 999874321                              01111211            1100          


Q ss_pred             ecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEE
Q psy12875        208 LNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVG  287 (308)
Q Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~G  287 (308)
                              .+++++|+++++.+.+        +++|.+.+.        +|++++++|+++++.   +++++.+  ++||
T Consensus       122 --------~~~~~l~~~~~~~~~~--------~~~H~d~~~--------lp~~~~~la~s~~~~---~qa~~~~--~~~g  172 (230)
T d1o1ya_         122 --------VSDNKFFREFPDRLRV--------FQWHGDTFD--------LPRRATRVFTSEKYE---NQGFVYG--KAVG  172 (230)
T ss_dssp             --------CCCCGGGTTSCSEEEE--------EEEESEEEC--------CCTTCEEEEECSSCS---CSEEEET--TEEE
T ss_pred             --------ccchhhhccCCccceE--------EEecceeee--------eccchhhhhhhcCCc---eEEEEec--CEeE
Confidence                    2467899998877653        889988554        899999999999888   4488886  5999


Q ss_pred             EeecCCccC
Q psy12875        288 IQFHPEKNA  296 (308)
Q Consensus       288 vQFHPE~~~  296 (308)
                      +|||||.+.
T Consensus       173 ~QfHPE~~~  181 (230)
T d1o1ya_         173 LQFHIEVGA  181 (230)
T ss_dssp             ESSBSSCCH
T ss_pred             EEeCCCCCH
Confidence            999999763

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7e-24  Score=184.71  Aligned_cols=158  Identities=15%  Similarity=0.250  Sum_probs=110.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      .+..+.|++.|+.+.++|++.+.+++..  .++|||+++||+.+...   .    ....+.++++.+  .++||||||+|
T Consensus        51 ~~ilr~l~~~~~~~~v~p~~~~~~~i~~--~~pdgivlS~GPg~P~~---~----~~~~~~~~~~~~--~~iPILGIClG  119 (228)
T d1a9xb2          51 RNILRMLVDRGCRLTIVPAQTSAEDVLK--MNPDGIFLSNGPGDPAP---C----DYAITAIQKFLE--TDIPVFGICLG  119 (228)
T ss_dssp             HHHHHHHHHTTEEEEEEETTCCHHHHHT--TCCSEEEECCCSBCSTT---C----HHHHHHHHHHTT--SCCCEEEETHH
T ss_pred             HHhHhHHHhcCceEEEcCCCCCHHHHHh--cCCCEEEEeCCCCcccc---c----hhHHHHHHHHHh--CCCCEEEEEcC
Confidence            3567999999999999999887665433  37999999998743222   1    234566666666  34999999999


Q ss_pred             hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875        127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV  206 (308)
Q Consensus       127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~  206 (308)
                      ||+|+.+ +||++.+....                                                     .+|....+
T Consensus       120 ~Qlia~~-~Gg~v~k~~~~-----------------------------------------------------~~G~~~~~  145 (228)
T d1a9xb2         120 HQLLALA-SGAKTVKMKFG-----------------------------------------------------HHGGNHPV  145 (228)
T ss_dssp             HHHHHHH-TTCCEEEEEEE-----------------------------------------------------EEEEEEEE
T ss_pred             hHHHHHH-cCCceeecccc-----------------------------------------------------cccccccc
Confidence            9999999 99987532210                                                     01111111


Q ss_pred             eecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEec-CCCceEEEEEEecCCCE
Q psy12875        207 NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSK-YKSWEFVSTVEHKEYPI  285 (308)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~-~~~~~~v~ai~~~~~p~  285 (308)
                      ..        ..+..+.              .+..+|++.+...+     ++..+.+++.+. |+.   +||++++++|+
T Consensus       146 ~~--------~~~~~~~--------------~~~~~~~~~~~~~~-----~~~~~~v~~~s~~d~~---i~ai~h~~~~i  195 (228)
T d1a9xb2         146 KD--------VEKNVVM--------------ITAQNHGFAVDEAT-----LPANLRVTHKSLFDGT---LQGIHRTDKPA  195 (228)
T ss_dssp             EE--------TTTTEEE--------------EEEEEEEEEECSTT-----CCTTEEEEEEETTTCC---EEEEEESSSSE
T ss_pred             cc--------cccceee--------------eecccccceecccc-----cccceEEEEEecCCCc---EEEEEECCCCE
Confidence            11        1111111              13668888876544     677888888874 555   88999999999


Q ss_pred             EEEeecCCccCccc
Q psy12875        286 VGIQFHPEKNAYEW  299 (308)
Q Consensus       286 ~GvQFHPE~~~~~~  299 (308)
                      ||||||||+..+++
T Consensus       196 ~gVQFHPE~~~t~~  209 (228)
T d1a9xb2         196 FSFQGNPEASPGPH  209 (228)
T ss_dssp             EEESSCTTCSSSCS
T ss_pred             EEEeCCCCCCCCcc
Confidence            99999999999876

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.5e-23  Score=179.81  Aligned_cols=171  Identities=13%  Similarity=0.150  Sum_probs=105.2

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      .++.++|++.|+.+++++++.+.++...  ..+||++++||+.+.... ..       .+.++..++  .++|+||||+|
T Consensus        19 ~~I~r~lr~lg~~~~I~~~d~~~~~~~~--~~~~giils~gp~~~~~~-~~-------~~~~~~~~~--~~~PiLGIClG   86 (205)
T d1gpma2          19 QLVARRVRELGVYCELWAWDVTEAQIRD--FNPSGIILSGGPESTTEE-NS-------PRAPQYVFE--AGVPVFGVCYG   86 (205)
T ss_dssp             HHHHHHHHHTTCEEEEEESCCCHHHHHH--HCCSEEEECCCSSCTTST-TC-------CCCCGGGGT--SSSCEEEETHH
T ss_pred             HHHHHHHHHCCCEEEEECCCCCHHHHhh--cCCCeEEecCCCCccchh-hh-------hhHHHHHHh--CCCCEEEeccc
Confidence            4678999999999999998766554433  378999999887543321 11       111222333  34888888888


Q ss_pred             hhHHHHHhcCCccccccccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCccccee
Q psy12875        127 FELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQV  206 (308)
Q Consensus       127 ~Qll~~~~~gg~~~~~~~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~  206 (308)
                      ||+|+.+ +||+..+..                               .+..|+.            .+..         
T Consensus        87 ~Qlla~~-~Gg~v~~~~-------------------------------~~~~G~~------------~~~~---------  113 (205)
T d1gpma2          87 MQTMAMQ-LGGHVEASN-------------------------------EREFGYA------------QVEV---------  113 (205)
T ss_dssp             HHHHHHH-HTCEEECCS-------------------------------SCEEEEE------------EEEE---------
T ss_pred             hhhhhhh-cCCcccccc-------------------------------ccccCcc------------eecc---------
Confidence            8888888 888763211                               1111211            1100         


Q ss_pred             eecccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEE
Q psy12875        207 NLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIV  286 (308)
Q Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~  286 (308)
                               ...+.++.+.+............++++|++.+..       +++.+.+++++.++.   ++++.++++++|
T Consensus       114 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~ni~  174 (205)
T d1gpma2         114 ---------VNDSALVRGIEDALTADGKPLLDVWMSHGDKVTA-------IPSDFITVASTESCP---FAIMANEEKRFY  174 (205)
T ss_dssp             ---------CSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE-------CCTTCEEEEECSSCS---CSEEEETTTTEE
T ss_pred             ---------ccccccccccccccccCCccceeeeccccccccc-------ccccceeeeccCCCc---eEEEEeCCCCEE
Confidence                     1122333333222111011111246777776653       678888888877766   558888888999


Q ss_pred             EEeecCCccCcccCC
Q psy12875        287 GIQFHPEKNAYEWTE  301 (308)
Q Consensus       287 GvQFHPE~~~~~~~~  301 (308)
                      |+|||||++.++.|.
T Consensus       175 gvQFHPE~s~s~~G~  189 (205)
T d1gpma2         175 GVQFHPEVTHTRQGM  189 (205)
T ss_dssp             EESBCTTSTTSTTHH
T ss_pred             EEEeecccCCCccHH
Confidence            999999999887764

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=3.7e-22  Score=169.86  Aligned_cols=77  Identities=22%  Similarity=0.445  Sum_probs=55.1

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhH--HHHHHHHHHHHHHHcCCCccEEEech
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYAD--AGRQILHLVDKINEEGVTFPVLGVCL  125 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~--~~~~~~e~~~~~~~~g~~~PvlGIC~  125 (308)
                      +.+++|+++|++++.+..   .+    .++++|+||+|||.++.     ...  ....+.+.++++.++  ++|+||||+
T Consensus        15 ~~~~al~~~G~~~~~i~~---~~----~l~~~D~lIlPGG~~~~-----~~~~~~~~~~~~~I~~~~~~--g~pilGIC~   80 (195)
T d2nv0a1          15 EHIHAIEACGAAGLVVKR---PE----QLNEVDGLILPGGESTT-----MRRLIDTYQFMEPLREFAAQ--GKPMFGTCA   80 (195)
T ss_dssp             HHHHHHHHTTCEEEEECS---GG----GGGGCSEEEECCSCHHH-----HHHHHHHTTCHHHHHHHHHT--TCCEEEETH
T ss_pred             HHHHHHHHCCCcEEEECC---HH----HHhhCCEEEECCCCccH-----HHHHhhhchhcchhhhhhhh--cceeeeccc
Confidence            567899999999988752   22    47889999999985311     111  122456777888884  499999999


Q ss_pred             hhhHHHHHhcCCcc
Q psy12875        126 GFELILQVSNNDTD  139 (308)
Q Consensus       126 G~Qll~~~~~gg~~  139 (308)
                      |||+|+.. ++|..
T Consensus        81 G~Qll~~~-~~g~~   93 (195)
T d2nv0a1          81 GLIILAKE-IAGSD   93 (195)
T ss_dssp             HHHHHSBC-CC---
T ss_pred             cHHHHHhh-hcccc
Confidence            99999988 66643

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.85  E-value=6.5e-22  Score=169.20  Aligned_cols=75  Identities=27%  Similarity=0.461  Sum_probs=55.3

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechh
Q psy12875         47 ASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLG  126 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G  126 (308)
                      .+..++|+++|+++.++.   +++    .++++||||||||..+..   ......+.+.++++++.+++  +|+||||+|
T Consensus        19 ~s~~~al~~~G~~~~~v~---~~~----~l~~~D~lIlPGG~~~~~---~~~l~~~~l~~~I~~~~~~g--kPiLGIClG   86 (202)
T d1q7ra_          19 REHVRAIEACGAEAVIVK---KSE----QLEGLDGLVLPGGESTTM---RRLIDRYGLMEPLKQFAAAG--KPMFGTCAG   86 (202)
T ss_dssp             HHHHHHHHHTTCEEEEEC---SGG----GGTTCSEEEECCCCHHHH---HHHHHHTTCHHHHHHHHHTT--CCEEEETTH
T ss_pred             HHHHHHHHHCCCcEEEEC---CHH----HHhcCCEEEECCCCcHHH---HHHhhhhHHHHHHhhhcccc--ceeeeeehh
Confidence            466799999999999885   232    478999999999753110   01112234567888888854  999999999


Q ss_pred             hhHHHHH
Q psy12875        127 FELILQV  133 (308)
Q Consensus       127 ~Qll~~~  133 (308)
                      ||+|+..
T Consensus        87 ~Qll~~~   93 (202)
T d1q7ra_          87 LILLAKR   93 (202)
T ss_dssp             HHHHEEE
T ss_pred             hHHhhhh
Confidence            9999987

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1e-21  Score=171.29  Aligned_cols=211  Identities=15%  Similarity=0.184  Sum_probs=115.0

Q ss_pred             CccchHHHHHHHHHHc----CCeEEEEEcCCChhHH--HHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         41 YTSYIAASYVKNIEAA----GARVVPILIGQDREYY--AEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~~~~--~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      .|+|.  |+.++|+.+    +..+.+.|++++.-+-  .+.|+++|||++|||.-       +.. ....+..++.+.+ 
T Consensus        16 ~DaY~--Sv~eaL~ha~~~~~~~v~i~wi~s~~~e~~~~~~L~~~dGIlvPGGFG-------~RG-~eGki~ai~yARe-   84 (258)
T d1s1ma1          16 PDAYK--SVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFG-------YRG-VEGMITTARFARE-   84 (258)
T ss_dssp             GGGGH--HHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCS-------STT-HHHHHHHHHHHHH-
T ss_pred             chhHH--hHHHHHHHhHHhcCCeEEEEEEccccccccccccccccccEEeecccC-------cCC-HHHHHHHHHHHHH-
Confidence            46785  778888765    4667777775432111  23588999999999951       111 2355566666666 


Q ss_pred             CCCccEEEechhhhHHHHHhcCCcccccccccc-----ccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQ-----QVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQ  189 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~-----~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~  189 (308)
                       +++|+||||+|||+++.......+.....++.     ...+.+.+.|......         .+.-       .|.-..
T Consensus        85 -n~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~~---------~~~~-------~~~~~~  147 (258)
T d1s1ma1          85 -NNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDEN---------GNVE-------VRSEKS  147 (258)
T ss_dssp             -TTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCTT---------SCCC-------------
T ss_pred             -cCccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCEEEecccccccC---------Ccee-------Eeeccc
Confidence             56999999999999998722221110111011     1111122322211100         0000       000000


Q ss_pred             HhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeeccccccCCCCCeEEEEEec
Q psy12875        190 VSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQDMIKYGLTETWNILTLSK  268 (308)
Q Consensus       190 ~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~~~~~~l~~~~~via~s~  268 (308)
                      -+||+..-.        ......   .+++.        ....+++..+ -.+.|+|.+++...+.. ...++++.+.++
T Consensus       148 ~~GgTmrlG--------~~~~~l---~~~s~--------~~~~Y~~~~i~ERHRHRYevN~~y~~~l-e~~gl~~sG~s~  207 (258)
T d1s1ma1         148 DLGGTMRLG--------AQQCQL---VDDSL--------VRQLYNAPTIVERHRHRYEVNNMLLKQI-EDAGLRVAGRSG  207 (258)
T ss_dssp             ----CCEEE--------EEEEEE---CTTCH--------HHHHTTSSEEEEEEEECCEECHHHHHHH-HHTTCEEEEECS
T ss_pred             CccccccCc--------ccchhh---hhHHH--------HHHhcCcceehhhhhcchhhhhhhhhhh-hcCCceeeeecC
Confidence            111121110        000000   11222        2222222222 25789999998765432 457999999998


Q ss_pred             CCCceEEEEEEecCCCEE-EEeecCCccCcccCC
Q psy12875        269 YKSWEFVSTVEHKEYPIV-GIQFHPEKNAYEWTE  301 (308)
Q Consensus       269 ~~~~~~v~ai~~~~~p~~-GvQFHPE~~~~~~~~  301 (308)
                      ++.  .|+++|.+++||| |+|||||+...+.-+
T Consensus       208 dg~--~vEiiEl~~HPffvg~QfHPEf~Srp~~p  239 (258)
T d1s1ma1         208 DDQ--LVEIIEVPNHPWFVACQFHPEFTSTPRDG  239 (258)
T ss_dssp             SSC--CEEEEECTTSSSEEEESSCGGGTCCTTTC
T ss_pred             CCC--eEEEEEeCCCCeEEEecCCccccCCCCCC
Confidence            875  4889999999965 999999999877654

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=3.4e-21  Score=167.36  Aligned_cols=203  Identities=15%  Similarity=0.238  Sum_probs=113.6

Q ss_pred             CccchHHHHHHHHHHc----CCeEEEEEcCCCh---hHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q psy12875         41 YTSYIAASYVKNIEAA----GARVVPILIGQDR---EYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINE  113 (308)
Q Consensus        41 ~~~~i~~~~~~~l~~a----G~~~~~i~~~~~~---~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~  113 (308)
                      .|+|.  |+.++|+.+    +..+.+.|++++.   +...+.|+++|||++|||.-       +.. ....+..++.+.+
T Consensus        16 ~DaY~--Si~eAL~hA~~~~~~~v~i~wi~s~~l~~~~~~~~L~~~dGIlvPGGFG-------~rG-~eGki~ai~yARe   85 (250)
T d1vcoa1          16 PDAYL--SLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFG-------VRG-IEGKVRAAQYARE   85 (250)
T ss_dssp             -CTTH--HHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCS-------STT-HHHHHHHHHHHHH
T ss_pred             chHHH--HHHHHHHHhHHhcCCeEEEEEEcchhcchhhHHHHHhcCCeEEecCCCC-------ccc-hHHHHHHHHHHHH
Confidence            46775  778888866    5667777765532   23456799999999999952       111 2244555565556


Q ss_pred             cCCCccEEEechhhhHHHHHhcCCcccccc-----ccccccccceeeecCCCCcchhhhHhhhcCCCCeeeeehhHHHHH
Q psy12875        114 EGVTFPVLGVCLGFELILQVSNNDTDFRKS-----CKVQQVNLNLKFLPGAKRSSLFSQINEEGVTFPVLGVCLGFELIL  188 (308)
Q Consensus       114 ~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~-----~~~~~~~~~l~~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~  188 (308)
                        +++|+||||+|||+++.......+....     .+.+..++.+.+.|.....                          
T Consensus        86 --n~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~--------------------------  137 (250)
T d1vcoa1          86 --RKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEV--------------------------  137 (250)
T ss_dssp             --TTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC--------------------------
T ss_pred             --cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceec--------------------------
Confidence              5699999999999999872222111000     0011111112222211000                          


Q ss_pred             HHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhccCCc-eeeccceeeeeccccccCCCCCeEEEEEe
Q psy12875        189 QVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPL-THNNHIWCITRQDMIKYGLTETWNILTLS  267 (308)
Q Consensus       189 ~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~H~~~v~~~~~~~~~l~~~~~via~s  267 (308)
                      ...||+....      .  ....+   .+++.+.        ..+++..+ -.+.|+|.|+++..+.. ...++.+.+++
T Consensus       138 ~~~ggtmRLG------~--~~~~l---~~~S~~~--------~~Y~~~~i~ERhRHRYevN~~y~~~l-e~~gl~~sg~~  197 (250)
T d1vcoa1         138 EGLGGTMRLG------D--WPMRI---KPGTLLH--------RLYGKEEVLERHRHRYEVNPLYVDGL-ERAGLVVSATT  197 (250)
T ss_dssp             ---CCCCEEE------E--EEEEE---CTTSHHH--------HHHCCSEEEEEEEESEEECHHHHHHH-HHHTEEEEEEC
T ss_pred             cccCcccccc------c--eeeee---cCCcHHH--------hhccccEEeehcccceeechhhhHHH-HhccccccccC
Confidence            0012221110      0  00001   1223222        22333332 25789999987654322 34689999998


Q ss_pred             cCCC---ceEEEEEEecCCCEE-EEeecCCccCcccCC
Q psy12875        268 KYKS---WEFVSTVEHKEYPIV-GIQFHPEKNAYEWTE  301 (308)
Q Consensus       268 ~~~~---~~~v~ai~~~~~p~~-GvQFHPE~~~~~~~~  301 (308)
                      ++..   ...|+++|.+++||| |+|||||+.....-+
T Consensus       198 ~d~~~~~~~lvEiiEl~~HPffvgvQfHPEf~Srp~~p  235 (250)
T d1vcoa1         198 PGMRGRGAGLVEAIELKDHPFFLGLQSHPEFKSRPMRP  235 (250)
T ss_dssp             CCBTTBSTTCEEEEEETTSSSEEEESSCGGGGCBTTBC
T ss_pred             cccccCCCCeEEEEECCCCCcEEEecCCccccCCCCCC
Confidence            6421   114889999999987 999999998876654

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.81  E-value=1.6e-20  Score=161.78  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=48.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhh
Q psy12875         48 SYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGF  127 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~  127 (308)
                      +..++|+++|.....+....+.+    .++++||||||||++..... ..........+.++++... .++||||||+||
T Consensus        16 ~~~~al~~lg~~~~~v~~~~~~~----~l~~~D~lIlPGgg~~~~~~-~~~~~~~~~~~~i~~~~~~-~gkPilGIC~G~   89 (218)
T d2abwa1          16 PHINHFIKLQIPSLNIIQVRNVH----DLGLCDGLVIPGGESTTVRR-CCAYENDTLYNALVHFIHV-LKKPIWGTCAGC   89 (218)
T ss_dssp             HHHHHHHTTCCTTEEEEEECSHH----HHHTCSEEEECCSCHHHHHH-HTTHHHHHHHHHHHHHHHT-SCCCEEEETHHH
T ss_pred             HHHHHHHHcCCCceEEEEeCCHH----HHhhCCEEEEcCCCccHHHH-HHHHHhccchHHHHHHHHH-cCCeEEEecHHH
Confidence            56789999996433333333443    46789999999987411000 0000112334445544432 359999999999


Q ss_pred             hHHHHH
Q psy12875        128 ELILQV  133 (308)
Q Consensus       128 Qll~~~  133 (308)
                      |+|+..
T Consensus        90 QlL~~~   95 (218)
T d2abwa1          90 ILLSKN   95 (218)
T ss_dssp             HHTEEE
T ss_pred             HHHHHh
Confidence            999987

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=3.2e-20  Score=158.08  Aligned_cols=73  Identities=22%  Similarity=0.404  Sum_probs=49.5

Q ss_pred             HHHHHHHHHcCCeEE--EEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHH-----HHHHHHHHHHHHcCCCcc
Q psy12875         47 ASYVKNIEAAGARVV--PILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAG-----RQILHLVDKINEEGVTFP  119 (308)
Q Consensus        47 ~~~~~~l~~aG~~~~--~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~-----~~~~e~~~~~~~~g~~~P  119 (308)
                      .|+.++|+++|....  .+....+.     ..+.+|+|||||.++       |....     ..+.+.++++.++  ++|
T Consensus        14 ~si~~al~~~g~~~~~~~~~~~~~~-----~~~~~D~lIlPG~G~-------f~~~~~~l~~~~~~~~i~~~~~~--~~P   79 (200)
T d1k9vf_          14 MNLYRGVKRASENFEDVSIELVESP-----RNDLYDLLFIPGVGH-------FGEGMRRLRENDLIDFVRKHVED--ERY   79 (200)
T ss_dssp             HHHHHHHHHHTTTSSSCEEEEESSS-----CSCCCSEEEECCCSC-------HHHHHHHHHHTTCHHHHHHHHHT--TCE
T ss_pred             HHHHHHHHHhccccccceEEEeCCh-----HhhccCeEEEcChHH-------HHHHHHhhhcccccccccccccc--cce
Confidence            367888998885432  22221222     246799999999653       33322     2456778888874  499


Q ss_pred             EEEechhhhHHHHH
Q psy12875        120 VLGVCLGFELILQV  133 (308)
Q Consensus       120 vlGIC~G~Qll~~~  133 (308)
                      |||||+|||+|+..
T Consensus        80 iLGIClG~QlL~~~   93 (200)
T d1k9vf_          80 VVGVCLGMQLLFEE   93 (200)
T ss_dssp             EEEETHHHHTTEEE
T ss_pred             EEEEecceeEEeee
Confidence            99999999999977

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.4e-17  Score=139.85  Aligned_cols=74  Identities=27%  Similarity=0.488  Sum_probs=52.5

Q ss_pred             cchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH-----HHHHHHHHHHHcCCC
Q psy12875         43 SYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR-----QILHLVDKINEEGVT  117 (308)
Q Consensus        43 ~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~-----~~~e~~~~~~~~g~~  117 (308)
                      .++ .++.+++++.|+.+.+++   +.+    .++++|++|+|||++       +.....     ...+.+......  +
T Consensus        11 gN~-~si~~~l~~lg~~~~i~~---~~~----~i~~~d~lIlpG~g~-------~~~~~~~~~~~~~~~~~~~~~~~--g   73 (195)
T d1ka9h_          11 GNL-RSAAKALEAAGFSVAVAQ---DPK----AHEEADLLVLPGQGH-------FGQVMRAFQESGFVERVRRHLER--G   73 (195)
T ss_dssp             SCH-HHHHHHHHHTTCEEEEES---STT----SCSSCSEEEECCCSC-------HHHHHHTTSSSCTHHHHHHHHHT--T
T ss_pred             cHH-HHHHHHHHHCCCeEEEEC---CHH----HHHHHhhhhcCCCcc-------ccchhhhccccCCcccccccccc--c
Confidence            354 478999999999998764   222    478899999999974       222111     233444555553  4


Q ss_pred             ccEEEechhhhHHHHH
Q psy12875        118 FPVLGVCLGFELILQV  133 (308)
Q Consensus       118 ~PvlGIC~G~Qll~~~  133 (308)
                      +|+||||+|||+|+..
T Consensus        74 ~pilGiClG~qll~~~   89 (195)
T d1ka9h_          74 LPFLGICVGMQVLYEG   89 (195)
T ss_dssp             CCEEECTHHHHTTSSE
T ss_pred             chhhhhhhhhheeeec
Confidence            9999999999999976

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.55  E-value=4.4e-15  Score=131.98  Aligned_cols=141  Identities=13%  Similarity=0.148  Sum_probs=92.1

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhH--HHHHHHHHHHHHHHcCCCccEEEechhhhHHHHHhcCCcccccccccccccccee
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYAD--AGRQILHLVDKINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLK  154 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~--~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~~~gg~~~~~~~~~~~~~~~l~  154 (308)
                      +++||+|++|++....+   |.+  +-..+.++++.+.++  .+|+||||+|+|+++.+ +||.......          
T Consensus        82 ~~fDglIITGap~~~~~---fedv~y~~eL~eii~~a~~~--~~~~lgiCwGaQa~~~~-lgGi~k~~~~----------  145 (281)
T d2ghra1          82 EKFDGLIITGAPVETLS---FEEVDYWEELKRIMEYSKTN--VTSTLHICWGAQAGLYH-HYGVQKYPLK----------  145 (281)
T ss_dssp             CCEEEEEECCCSCTTSC---GGGSTTHHHHHHHHHHHHHH--EEEEEEETHHHHHHHHH-HHCCCCEEEE----------
T ss_pred             ccCCEEEEeCCCCCccc---ccccccHHHHHHHHHHHHhc--CCCeEEEcHHHHHHHHH-hCCCccccCC----------
Confidence            57999999999865433   333  234555555555553  48999999999999999 9886521110          


Q ss_pred             eecCCCCcchhhhHhhhcCCCCeeeeehhHHHHHHHhCCcccccCCcccceeeecccccCCCCCCcCccCCChhHHHhhc
Q psy12875        155 FLPGAKRSSLFSQINEEGVTFPVLGVCLGFELILQVSNNDTDFRKSCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFY  234 (308)
Q Consensus       155 ~~pg~~~~~~~~~i~~~~~~~PilGiClG~Qll~~~~G~~v~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (308)
                                          .+..||-            +             +...    .+.++|+.++++.+.+   
T Consensus       146 --------------------~k~~Gv~------------~-------------~~~~----~~~~pL~~g~~d~f~~---  173 (281)
T d2ghra1         146 --------------------EKMFGVF------------E-------------HEVR----EQHVKLLQGFDELFFA---  173 (281)
T ss_dssp             --------------------EEEEEEE------------E-------------EEEC----CSSCGGGTTCCSEEEE---
T ss_pred             --------------------CceEEEE------------E-------------Eeec----cCCChhccCCcchhhe---
Confidence                                0112221            1             0000    2467899999887653   


Q ss_pred             cCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        235 QKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       235 ~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                           .+.|...+..+.+.   .++++.+++.|++++   +.++..++.+++++|+|||...
T Consensus       174 -----p~Sr~~~~~~d~v~---~~p~l~vLa~S~~~g---~~~~~~~~~~~~~iQgHPEYd~  224 (281)
T d2ghra1         174 -----PHSRHTEVRESDIR---EVKELTLLANSEEAG---VHLVIGQEGRQVFALGHSEYSC  224 (281)
T ss_dssp             -----EEEEEEECCHHHHH---TCTTEEEEEEETTTE---EEEEEEGGGTEEEECSCTTCCT
T ss_pred             -----eeeecccCCHHHHh---hCCCceEEeecCCcc---cEEEEECCCCEEEEeCCCCcch
Confidence                 45554444433321   567888999998876   5577777778999999999885

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.37  E-value=1.4e-12  Score=114.36  Aligned_cols=96  Identities=17%  Similarity=0.242  Sum_probs=65.6

Q ss_pred             CCCCEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCChhHH--HHhcCCCCEEEEcCCCCCCCC
Q psy12875         16 TDTPVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDREYY--AEILTQINGVVIPGGGTGFDH   93 (308)
Q Consensus        16 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~--~~~l~~~dGlilpGG~~~~~~   93 (308)
                      ..||.|+|+..|...              .+..-..+++.+|+++..+++++   .+  +..|+++|+|+||||-+.-+ 
T Consensus         4 ~~kpkvaVl~~pGtN--------------cd~e~~~Af~~aG~~~~~v~~~d---l~~~~~~L~~~~~lvipGGFSygD-   65 (262)
T d1t3ta2           4 GARPKVAVLREQGVN--------------SHVEMAAAFHRAGFDAIDVHMSD---LLGGRIGLGNFHALVACGGFSYGD-   65 (262)
T ss_dssp             TCCCEEEEEECTTBC--------------CHHHHHHHHHHTTCEEEEEEHHH---HHHTSCCGGGCSEEEECCBCGGGG-
T ss_pred             CCCCeEEEEeCCCCC--------------cHHHHHHHHHHcCCceEEEEeee---cccCcccccccceEEEeccccccc-
Confidence            468999999998764              13344679999999999998642   12  12588999999999975322 


Q ss_pred             CCchhHHH-----H-----HHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         94 PNGYADAG-----R-----QILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        94 ~~~~~~~~-----~-----~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                         |.+..     .     .+.+.+.++..+ .++||||||.|+|+|...
T Consensus        66 ---~l~ag~~~a~~~~~~~~~~~~~~~f~~~-~~~~iLGICNGfQiL~el  111 (262)
T d1t3ta2          66 ---VLGAGEGWAKSILFNHRVRDEFETFFHR-PQTLALGVCNGCQMMSNL  111 (262)
T ss_dssp             ---TTSTTHHHHHHHHHSHHHHHHHHHHHHS-SSCEEEEETHHHHHHHTT
T ss_pred             ---cccchhHHHhhhhhhhHHHHHHHHHhhc-CCceEEeechHHHHHHHh
Confidence               22211     1     122333444443 359999999999999975

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1.8e-10  Score=98.89  Aligned_cols=49  Identities=24%  Similarity=0.384  Sum_probs=40.7

Q ss_pred             cceeeecCCCCcch----hhhHhh-hcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        151 LNLKFLPGAKRSSL----FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      .++.++|||++|..    ...+++ +..++||||||||||+|+.++||+|.+.+
T Consensus        82 dgivlS~GPg~P~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~~Gg~v~k~~  135 (228)
T d1a9xb2          82 DGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMK  135 (228)
T ss_dssp             SEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEeCCCCccccchhHHHHHHHHHhCCCCEEEEEcChHHHHHHcCCceeecc
Confidence            46999999999874    334444 46799999999999999999999998863

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=98.68  E-value=5.5e-09  Score=87.07  Aligned_cols=47  Identities=21%  Similarity=0.441  Sum_probs=37.9

Q ss_pred             ceeeecCCCCcch---hhhHh-hhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSL---FSQIN-EEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~---~~~i~-~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .+.++|||+.|..   ...++ ....++|+||||||||+|+.++|++|.+.
T Consensus        50 ~iils~Gpg~~~~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~~Gg~v~~~  100 (192)
T d1i7qb_          50 VLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQA  100 (192)
T ss_dssp             EEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTTCEEEEE
T ss_pred             eEEecCccccccccccchhhHHhhhcCccEEeeeHHHHHHHHHCCCeEEEC
Confidence            4788899998773   22333 34679999999999999999999999875

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.63  E-value=1e-08  Score=85.34  Aligned_cols=48  Identities=25%  Similarity=0.295  Sum_probs=37.9

Q ss_pred             cceeeecCCCCcchhh------hHh-hhcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSLFS------QIN-EEGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~~~------~i~-~~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+++||+.|....      .+. ....++|+||||||||+|+.++|+++.+.
T Consensus        47 ~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiLGIClG~Qll~~~~G~~v~~~  101 (195)
T d1qdlb_          47 DRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRA  101 (195)
T ss_dssp             SEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEE
T ss_pred             CccccCCCCCccccccccccchhhhhhhcCCCCEEEeehhhhhhhhccCCEEEee
Confidence            3588999999876311      222 24678999999999999999999999875

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=1.1e-08  Score=85.76  Aligned_cols=49  Identities=14%  Similarity=0.238  Sum_probs=37.9

Q ss_pred             cceeeecCCCCcchhh---hHh-hhcCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        151 LNLKFLPGAKRSSLFS---QIN-EEGVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       151 ~~l~~~pg~~~~~~~~---~i~-~~~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      ..+.++|||+.+....   .+. ....++|+||||||||+|+.++||++.+.+
T Consensus        50 ~giils~gp~~~~~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~~Gg~v~~~~  102 (205)
T d1gpma2          50 SGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASN  102 (205)
T ss_dssp             SEEEECCCSSCTTSTTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCS
T ss_pred             CeEEecCCCCccchhhhhhHHHHHHhCCCCEEEeccchhhhhhhcCCcccccc
Confidence            4588999998875322   222 236789999999999999999999998763

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.36  E-value=2.1e-07  Score=76.58  Aligned_cols=47  Identities=21%  Similarity=0.436  Sum_probs=35.0

Q ss_pred             ceeeecCCCCcch---hhhHhh-hcCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        152 NLKFLPGAKRSSL---FSQINE-EGVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       152 ~l~~~pg~~~~~~---~~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ++.+++||..+..   ...+++ ...++|+||||||||+|+.++|+++.+.
T Consensus        46 gvilsgg~~~~~~~~~~~~i~~~~~~~~PiLGIClG~Q~l~~~~G~~~~~~   96 (188)
T d1wl8a1          46 GIIFSGGPSLENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRG   96 (188)
T ss_dssp             EEEECCCSCTTCCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEEC
T ss_pred             eeeeccCcccccccccccccccccccccceeehhhhhhhhhhhcCCccccc
Confidence            4667777665542   233443 3568999999999999999999998765

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.35  E-value=1.8e-07  Score=79.81  Aligned_cols=49  Identities=27%  Similarity=0.367  Sum_probs=35.9

Q ss_pred             cceeeecCCCCcch----------hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC
Q psy12875        151 LNLKFLPGAKRSSL----------FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK  199 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----------~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~  199 (308)
                      ..+.+..||..+..          .+.+++. ..++|+||||||||+|+.++||+|.+.+
T Consensus        50 d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~alGg~V~~~~  109 (230)
T d1o1ya_          50 SLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGK  109 (230)
T ss_dssp             SEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECT
T ss_pred             CEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHHhcccccccc
Confidence            35777777755431          2333332 5689999999999999999999998753

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.12  E-value=7.1e-07  Score=74.01  Aligned_cols=48  Identities=19%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             cceeeecCCCCcch----hhhHh-hh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL----FSQIN-EE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~----~~~i~-~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..+.+++|++.+..    ...+. .. ..++|+||||+|||+|+.++||++.+.
T Consensus        44 dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gg~~~~~   97 (196)
T d2a9va1          44 DGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKA   97 (196)
T ss_dssp             SEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEeccccccccccchhhhHHHHHhhcCceEEEeehhhhhhhhccccccccc
Confidence            45788888776441    12222 22 468999999999999999999998764

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=97.88  E-value=1.5e-05  Score=63.37  Aligned_cols=95  Identities=12%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             CEEEEeccccCCCCcccccCCCCccchHHHHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEc
Q psy12875         19 PVIGILAQEYTHIPSYVKAYPNYTSYIAASYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVIP   85 (308)
Q Consensus        19 P~IGI~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilp   85 (308)
                      ..|+|+..+...          ...+  ....+.|+++|+++..+......            ..+.. ....+|+|++|
T Consensus         4 rkVaiLv~dg~~----------~~e~--~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~~~~~~~yDaliiP   71 (156)
T d1p80a1           4 RVVAILLNDEVR----------SADL--LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVP   71 (156)
T ss_dssp             CEEEEECCTTCC----------HHHH--HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEEC
T ss_pred             cEEEEEeCCCCC----------HHHH--HHHHHHHHHCCCEEEEEecccccccccceeEEeeeeeeccCCcccCCEEEee
Confidence            478888765432          1122  35678899999999887644321            01111 23478999999


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         86 GGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        86 GG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ||..      .-......+.++++++++++  +||.+||.|.++|+.+
T Consensus        72 GG~~------~~l~~~~~~~~~i~e~~~~~--K~I~aic~g~~~La~a  111 (156)
T d1p80a1          72 CGNI------ADIADNGDANYYLMEAYKHL--KPIALAGDARKFKATI  111 (156)
T ss_dssp             CSCT------HHHHTCHHHHHHHHHHHHTT--CCEEEEGGGGGGGGTT
T ss_pred             CCch------HHHhcchHHHHHHHHHHHcC--CeEEEECchHHHHHHc
Confidence            9952      12222347789999999955  9999999999999866

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=3.3e-05  Score=64.82  Aligned_cols=83  Identities=16%  Similarity=0.345  Sum_probs=55.8

Q ss_pred             HHHHHHHcCCeEEEEEcCCCh------------------------------hHHHH-hcCCCCEEEEcCCCCCCCCCCch
Q psy12875         49 YVKNIEAAGARVVPILIGQDR------------------------------EYYAE-ILTQINGVVIPGGGTGFDHPNGY   97 (308)
Q Consensus        49 ~~~~l~~aG~~~~~i~~~~~~------------------------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~   97 (308)
                      -+..|+++|.+++.+.++...                              ..+.+ ..+++|+|++|||......-..+
T Consensus        25 ~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v~~~~yDaliiPGG~g~~~~l~~~  104 (217)
T d1vhqa_          25 TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNF  104 (217)
T ss_dssp             HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCH
T ss_pred             HHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHCCHhHCCEEEecCCcccHHHHhhh
Confidence            367899999999988654210                              01112 24679999999996311110011


Q ss_pred             ------hHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         98 ------ADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        98 ------~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                            .+..+.+.++++++.+++  +||.+||.|.++|+.+
T Consensus       105 ~~~~~~~~~~~~v~~li~~~~~~g--k~iaaIC~gp~~l~~~  144 (217)
T d1vhqa_         105 ASLGSECTVDRELKALAQAMHQAG--KPLGFMCIAPAMLPKI  144 (217)
T ss_dssp             HHHGGGCCBCHHHHHHHHHHHHTT--CCEEEETTGGGGHHHH
T ss_pred             hccccccccCHHHHHHHHHHHHcC--CCEEEEChhHHHHHHH
Confidence                  111246788889999965  9999999999999877

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=4.7e-06  Score=68.89  Aligned_cols=115  Identities=24%  Similarity=0.371  Sum_probs=63.4

Q ss_pred             ceeeecCCCCcc----------hhhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC------------Ccccceeee
Q psy12875        152 NLKFLPGAKRSS----------LFSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK------------SCKVQQVNL  208 (308)
Q Consensus       152 ~l~~~pg~~~~~----------~~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~------------~g~~~~~~~  208 (308)
                      .+.+ ||++...          ..+.|++. ..++|+||||+|||+|+...+.......            ..+....+|
T Consensus        45 ~lIl-PG~G~f~~~~~~l~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (200)
T d1k9vf_          45 LLFI-PGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGW  123 (200)
T ss_dssp             EEEE-CCCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTEEEETTSTTCCCCCCEEEEEEECSCSSCSEEEE
T ss_pred             eEEE-cChHHHHHHHHhhhcccccccccccccccceEEEEecceeEEeeecccCcccccccccccccccccccccccccc
Confidence            4555 9988621          23345543 5689999999999999976532221110            111111222


Q ss_pred             cccccCCCCCCcCccCCChhHHHhhccCCceeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEE
Q psy12875        209 NLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGI  288 (308)
Q Consensus       209 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~Gv  288 (308)
                      ...        ......         .....++.|++.+.+..        .. +++.+.+++..++++++..  ++||+
T Consensus       124 ~~~--------~~~~~~---------~~~~~~~~hs~~~~~~~--------~~-~~~~~~~~~~~~~a~v~~~--ni~Gv  175 (200)
T d1k9vf_         124 NEV--------IFKDTF---------PNGYYYFVHTYRAVCEE--------EH-VLGTTEYDGEIFPSAVRKG--RILGF  175 (200)
T ss_dssp             EEE--------EESSSS---------CCEEEEEEESEEEEECG--------GG-EEEEEEETTEEEEEEEEET--TEEEE
T ss_pred             ccc--------cccccC---------CceEEEEeeeeeecccc--------cc-eEEEEEECCeEEEEEEEcC--CEEEE
Confidence            100        001111         11234778888876422        22 3344444444567778865  59999


Q ss_pred             eecCCcc
Q psy12875        289 QFHPEKN  295 (308)
Q Consensus       289 QFHPE~~  295 (308)
                      |||||++
T Consensus       176 QFHPEkS  182 (200)
T d1k9vf_         176 QFHPEKS  182 (200)
T ss_dssp             SSBGGGS
T ss_pred             eCCCccc
Confidence            9999987

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=9e-05  Score=59.44  Aligned_cols=79  Identities=20%  Similarity=0.436  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--------------hhHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAGARVVPILIGQD--------------REYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN  112 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~--------------~~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~  112 (308)
                      ...+.|+++|.++..+.....              +..+++ ..+++|+|++|||..   +  .+......+.++++++.
T Consensus        19 ~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~~~~~~yDalivpGG~~---~--~~l~~~~~~~~~i~~~~   93 (170)
T d1oi4a1          19 SPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHS---P--DYLRGDNRFVTFTRDFV   93 (170)
T ss_dssp             HHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTH---H--HHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEeccCCCCceeeeeccCeEEecCCcHHHCChhhceEEEEccchh---h--hhhccChHHHHHHHHHh
Confidence            346788999999887764321              001111 245789999999942   1  13223357889999988


Q ss_pred             HcCCCccEEEechhhhHHHHH
Q psy12875        113 EEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       113 ~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +++  +||.+||.|-.+|+.+
T Consensus        94 ~~~--k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          94 NSG--KPVFAICHGPQLLISA  112 (170)
T ss_dssp             HTT--CCEEEETTTHHHHHHH
T ss_pred             hcC--CeeeecccchHHHhhh
Confidence            854  9999999999999976

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2e-05  Score=68.89  Aligned_cols=27  Identities=37%  Similarity=0.692  Sum_probs=23.7

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ..++|+||||+|||+|+.++||++...
T Consensus        95 ~~~~PilGIC~G~Qll~~~~gG~~~~~  121 (288)
T d1l9xa_          95 GDYFPVWGTCLGFEELSLLISGECLLT  121 (288)
T ss_dssp             TCCCCEEEETHHHHHHHHHHHSSCCCE
T ss_pred             hCCCCeEEEcHHHHHHHHHhCCEeecc
Confidence            457899999999999999999987653

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.44  E-value=0.00011  Score=61.55  Aligned_cols=78  Identities=14%  Similarity=0.165  Sum_probs=53.1

Q ss_pred             HHHHHHcCCeEEEEEcCCC-------------h--hHHHH-----------hcCCCCEEEEcCCCCCCCCCCchhHHHHH
Q psy12875         50 VKNIEAAGARVVPILIGQD-------------R--EYYAE-----------ILTQINGVVIPGGGTGFDHPNGYADAGRQ  103 (308)
Q Consensus        50 ~~~l~~aG~~~~~i~~~~~-------------~--~~~~~-----------~l~~~dGlilpGG~~~~~~~~~~~~~~~~  103 (308)
                      .+.|+++|++++.......             .  .+...           ..++||+|++|||....    ......+.
T Consensus        32 ~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~dYd~v~iPGG~g~~----~~l~~~~~  107 (221)
T d1u9ca_          32 YLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTM----FDFPDNET  107 (221)
T ss_dssp             HHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHH----HHSTTCHH
T ss_pred             HHHHHHCCCEEEEEecCCCcceeccCccccccchhHHHHHHhhCCCChhHCCHhHCCEEEeCCCCchh----hcchhhHH
Confidence            4788999999998875311             0  00001           24679999999996311    01122346


Q ss_pred             HHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875        104 ILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       104 ~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +.++++.+.+++  +||.+||+|.++|..+
T Consensus       108 l~~li~~~~~~~--k~iaAIChgp~~l~~a  135 (221)
T d1u9ca_         108 LQYVLQQFAEDG--RIIAAVCHGPSGLVNA  135 (221)
T ss_dssp             HHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             HHHHHHHHHhcc--Ccceeecccceeeecc
Confidence            777888888854  9999999999999865

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00012  Score=59.36  Aligned_cols=80  Identities=15%  Similarity=0.203  Sum_probs=55.5

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC-------------hhHHHH--hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875         48 SYVKNIEAAGARVVPILIGQD-------------REYYAE--ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN  112 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~-------------~~~~~~--~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~  112 (308)
                      .-.+.|+++|+++.++.....             +..+++  ..+.+|+|++|||..  .+  ......+.+.++++++.
T Consensus        19 ~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipGG~~--~~--~~l~~~~~l~~~lr~~~   94 (186)
T d1p5fa_          19 IPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL--GA--QNLSESAAVKEILKEQE   94 (186)
T ss_dssp             HHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECCCHH--HH--HHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEEecCCcceecCCCccccCccchhccCCcccccEEEEecCcc--cc--ccccchHHHHHHHHHhh
Confidence            346888999999988875421             111222  235799999999841  00  11122346788899998


Q ss_pred             HcCCCccEEEechhhhHHHHH
Q psy12875        113 EEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       113 ~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +++  +||.+||.|..+|+.+
T Consensus        95 ~~~--k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          95 NRK--GLIAAICAGPTALLAH  113 (186)
T ss_dssp             HTT--CEEEEETTTHHHHHHT
T ss_pred             ccc--cceeecccCcchhhhc
Confidence            855  9999999999999976

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.30  E-value=9.2e-05  Score=59.00  Aligned_cols=79  Identities=16%  Similarity=0.338  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         48 SYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      ...+.|+++|+++..+..+...            ..+++ ...++|+|++|||..   +  ......+.+.++++++.++
T Consensus        18 ~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~~~~~~~d~viipGg~~---~--~~~~~~~~~~~~l~~~~~~   92 (166)
T d1g2ia_          18 YPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRA---P--ERVRLNEKAVSIARKMFSE   92 (166)
T ss_dssp             HHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH---H--HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEEEEEeCCCceEeecCCcEEeccccHHHcCcccccEEEEecccc---h--hhhccChHHHHHHHHHHhc
Confidence            3457889999999887643210            01122 235789999999952   1  1222235788899998885


Q ss_pred             CCCccEEEechhhhHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~  133 (308)
                      +  +||.+||.|..+|+.+
T Consensus        93 ~--k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          93 G--KPVASICHGPQILISA  109 (166)
T ss_dssp             T--CCEEEETTTTHHHHHH
T ss_pred             C--Ceeeeccccchhhhhc
Confidence            5  9999999999999977

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=97.28  E-value=0.00047  Score=55.43  Aligned_cols=80  Identities=15%  Similarity=0.139  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         48 SYVKNIEAAGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        48 ~~~~~l~~aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      ...+.|+++|.++..+......            ..+.. ....+|++++|||...  +  ........+.++++++.++
T Consensus        21 ~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~~~~~~~~dalivpgg~~~--~--~~~~~~~~~~~~l~~~~~~   96 (184)
T d1sy7a1          21 AAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKA--A--ETLSKNGRALHWIREAFGH   96 (184)
T ss_dssp             HHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHH--H--HHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCEEEEEEecCCcccccccccccccccccccccccceEEEEeecccc--c--cccccccchhHHHHHHHhc
Confidence            4567889999999887643221            00111 2346899999999521  0  1112234788899999985


Q ss_pred             CCCccEEEechhhhHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~  133 (308)
                      +  +||.+||.|.++|+.+
T Consensus        97 ~--k~i~aic~G~~~La~a  113 (184)
T d1sy7a1          97 L--KAIGATGEAVDLVAKA  113 (184)
T ss_dssp             T--CEEEEETTHHHHHHHH
T ss_pred             C--CceEEechHHHHHHHc
Confidence            5  9999999999999987

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=3.8e-05  Score=63.13  Aligned_cols=110  Identities=13%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             hhHhh-hcCCCCeeeeehhHHHHHHHhCCcccccCC-cccceeeecccc-cCCCCCCcCccCCChhHHHhhccCCceeec
Q psy12875        166 SQINE-EGVTFPVLGVCLGFELILQVSNNDTDFRKS-CKVQQVNLNLKF-LPGAKRSSLFSQVPSKYIKKFYQKPLTHNN  242 (308)
Q Consensus       166 ~~i~~-~~~~~PilGiClG~Qll~~~~G~~v~~~~~-g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~  242 (308)
                      +.|++ ....+|+||||+|||||+..+++....... -+.......... ......+..+++++...        .++++
T Consensus        63 ~~I~~~~~~g~pilGIC~G~Qll~~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  134 (195)
T d2nv0a1          63 EPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPF--------TGVFI  134 (195)
T ss_dssp             HHHHHHHHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEEECCCSCTTTSEEEEEECCTTCSSCE--------EEEEE
T ss_pred             chhhhhhhhcceeeeccccHHHHHhhhcccccccccccccccccccccccceeeeeeecccCCCCCc--------eEEEE
Confidence            44444 356899999999999999988764333210 000000000000 00001223444444333        24778


Q ss_pred             cceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        243 HIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       243 H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                      |++.+..       ++++++++|++++ .   +.|++.+  +++|+|||||++.
T Consensus       135 h~~~~~~-------~~~~~~vla~~~~-~---~~a~~~~--ni~g~QFHPE~s~  175 (195)
T d2nv0a1         135 RAPHILE-------AGENVEVLSEHNG-R---IVAAKQG--QFLGCSFHPELTE  175 (195)
T ss_dssp             SCCEEEE-------ECTTCEEEEEETT-E---EEEEEET--TEEEESSCTTSSS
T ss_pred             eeeEEEe-------cCCCceeeeeECC-E---EEEEEEC--CEEEEEeCCcccC
Confidence            8888764       7788999987644 2   4477765  5999999999886

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00029  Score=57.76  Aligned_cols=79  Identities=15%  Similarity=0.263  Sum_probs=53.2

Q ss_pred             HHHHHHHcCCeEEEEEcCCC---------------hhHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy12875         49 YVKNIEAAGARVVPILIGQD---------------REYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKIN  112 (308)
Q Consensus        49 ~~~~l~~aG~~~~~i~~~~~---------------~~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~  112 (308)
                      -.+.|+++|+++..+....+               +..+++ ...++|+|++|||..  .+  ........+.++++++.
T Consensus        20 p~d~L~rag~~v~~~s~~~~~~~~v~~~~G~~v~~d~~~~d~~~~d~D~liiPGG~~--~~--~~l~~~~~l~~~lr~~~   95 (195)
T d2ab0a1          20 TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIK--GA--ECFRDSTLLVETVKQFH   95 (195)
T ss_dssp             HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHH--HH--HHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEEEcCCCCceEEeCCCcEeecCcChHHcCcccceEEEEccccC--cc--ccccccHHHHHHHHHHh
Confidence            35788999999887764322               011222 356899999999931  00  12222347788899998


Q ss_pred             HcCCCccEEEechh-hhHHHHH
Q psy12875        113 EEGVTFPVLGVCLG-FELILQV  133 (308)
Q Consensus       113 ~~g~~~PvlGIC~G-~Qll~~~  133 (308)
                      +++  +||.+||.| ..+|+.+
T Consensus        96 ~~g--k~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          96 RSG--RIVAAICAAPATVLVPH  115 (195)
T ss_dssp             HTT--CEEEEETHHHHHHTTTT
T ss_pred             hcc--ceeeeeeccchhhhhhc
Confidence            855  999999999 4777755

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00032  Score=59.27  Aligned_cols=51  Identities=14%  Similarity=0.161  Sum_probs=37.3

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      ++||+|++|||....    ......+.+.++++++++++  +||.+||+|...|+.+
T Consensus        96 ~~ydav~ipGG~g~~----~dl~~~~~l~~li~~~~~~g--k~vaAIChGp~~L~~~  146 (236)
T d1qvwa_          96 DDYQIFMASAGHGTL----FDYPKAKDLQDIASEIYANG--GVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             GGCSEEEECCSTTHH----HHGGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGTTC
T ss_pred             hHCCEEEEeCCccch----hcchhhhHHHHHHHHHHhcC--CeEEEehhhHHHHHHH
Confidence            579999999995211    11222346778888889865  9999999999988654

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.76  E-value=0.00013  Score=60.13  Aligned_cols=108  Identities=13%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             hHhhh-cCCCCeeeeehhHHHHHHHhCCcccccC---CcccceeeecccccCCCCCCcCccCCChhHHHhhccCCceeec
Q psy12875        167 QINEE-GVTFPVLGVCLGFELILQVSNNDTDFRK---SCKVQQVNLNLKFLPGAKRSSLFSQVPSKYIKKFYQKPLTHNN  242 (308)
Q Consensus       167 ~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~~---~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~  242 (308)
                      .|++. ..++|+||||+|||+|+...++...+..   .+++........ .........+.+++...        ..+++
T Consensus        69 ~I~~~~~~gkPiLGIClG~Qll~~~~~~~~~~~lg~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~  139 (202)
T d1q7ra_          69 PLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHLGLMDITVERNSFGRQ-RESFEAELSIKGVGDGF--------VGVFI  139 (202)
T ss_dssp             HHHHHHHTTCCEEEETTHHHHHEEEEESSCCCCCCCEEEEEECHHHHCC-CCCEEEEEEETTTEEEE--------EEEES
T ss_pred             HHhhhccccceeeeeehhhHHhhhhccccceeecccccccccccccccc-cccceeccccccccCCc--------ceEEE
Confidence            44443 6789999999999999986554322210   000000000000 00000111222232222        23566


Q ss_pred             cceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        243 HIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       243 H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                      |+..+..       +++.++++|+..+ .   ++|++..  ++||+|||||++.
T Consensus       140 ~~~~~~~-------~~~~~~~~a~~~~-~---~~a~~~g--ni~G~QFHPEkS~  180 (202)
T d1q7ra_         140 RAPHIVE-------AGDGVDVLATYND-R---IVAARQG--QFLGCSFHPELTD  180 (202)
T ss_dssp             SCCEEEE-------ECTTCEEEEEETT-E---EEEEEET--TEEEESSCGGGSS
T ss_pred             eeccccc-------cccceeEEeecCC-E---EEEEEeC--CEEEEEeCCccCC
Confidence            7777664       7889999998644 2   5577765  4999999999975

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.54  E-value=0.00069  Score=55.03  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=51.6

Q ss_pred             HHHHHHH-cCCeEEEEEcCCCh------------hHHHH-hcCCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHc
Q psy12875         49 YVKNIEA-AGARVVPILIGQDR------------EYYAE-ILTQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEE  114 (308)
Q Consensus        49 ~~~~l~~-aG~~~~~i~~~~~~------------~~~~~-~l~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~  114 (308)
                      ....+++ +|.++..+..+..+            ..+++ ...++|.|++|||.. .     .....+++.++++++.++
T Consensus        20 ~~~~l~~~~g~~v~~vs~~~~~V~s~~G~~v~~d~~l~~~~~~~~D~liipGG~~-~-----~~~~~~~l~~~lr~~~~~   93 (188)
T d2fexa1          20 LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLS-W-----EKGTAADLGGLVKRFRDR   93 (188)
T ss_dssp             HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSH-H-----HHTCCCCCHHHHHHHHHT
T ss_pred             HHHHHhhcCCcEEEEEeCCCCcEEcCCCCEEeecCchHHCChhhccEEEecCCcc-c-----cccccHHHHHHHHHHHHh
Confidence            3566765 79998887654321            11222 235799999999852 1     111112477888888885


Q ss_pred             CCCccEEEechhhhHHHHH
Q psy12875        115 GVTFPVLGVCLGFELILQV  133 (308)
Q Consensus       115 g~~~PvlGIC~G~Qll~~~  133 (308)
                      +  +||.+||.|..+|+.+
T Consensus        94 ~--~~i~aiC~g~~~La~a  110 (188)
T d2fexa1          94 D--RLVAGICAAASALGGT  110 (188)
T ss_dssp             T--CEEEEETHHHHHHHHT
T ss_pred             C--CEEEEecchhHHHHHc
Confidence            4  9999999999999875

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00056  Score=58.15  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=33.7

Q ss_pred             ceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCcccc
Q psy12875        152 NLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDF  197 (308)
Q Consensus       152 ~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~  197 (308)
                      ++.+-+|-+....   +..++.. ..++|.||||||||++...+..++-.
T Consensus        60 GIlvPGGFG~RG~eGki~ai~yARen~iPfLGIClGmQ~avIE~ARnvlg  109 (258)
T d1s1ma1          60 AILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVAN  109 (258)
T ss_dssp             EEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHC
T ss_pred             cEEeecccCcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhCC
Confidence            5666667666553   4455543 57999999999999999988766543

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.52  E-value=0.00016  Score=59.78  Aligned_cols=47  Identities=21%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             eeccceeeeeccccccCCCCCeEEEEEec--CCCceEEEEEEecCCCEEEEeecCCccCc
Q psy12875        240 HNNHIWCITRQDMIKYGLTETWNILTLSK--YKSWEFVSTVEHKEYPIVGIQFHPEKNAY  297 (308)
Q Consensus       240 ~~~H~~~v~~~~~~~~~l~~~~~via~s~--~~~~~~v~ai~~~~~p~~GvQFHPE~~~~  297 (308)
                      ++.|++...         +++.+++++..  ..+..+++|++..  +++|+|||||++..
T Consensus       153 y~~h~~~~~---------~~~~~~~a~~~~~~~g~~~i~av~~~--ni~G~QFHPE~s~d  201 (218)
T d2abwa1         153 RAPYIREIL---------SDEVKVLATFSHESYGPNIIAAVEQN--NCLGTVFHPELLPH  201 (218)
T ss_dssp             SCCEEEEEC---------CTTCEEEEEEEETTTEEEEEEEEEET--TEEEESSCGGGSSC
T ss_pred             EeeEEEEee---------cCChhhheeeccccCCCeEEEEEecC--CEEEEEcCCeecCC
Confidence            555666653         45556666543  2334679999876  49999999998753

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.00064  Score=57.54  Aligned_cols=48  Identities=15%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             cceeeecCCCCcch---hhhHhhh-cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        151 LNLKFLPGAKRSSL---FSQINEE-GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       151 ~~l~~~pg~~~~~~---~~~i~~~-~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      .++.+-+|.+....   +..++.. ..++|.||||||||++...+..+|...
T Consensus        60 dGIlvPGGFG~rG~eGki~ai~yARen~iPfLGIClGmQ~avIEfARnvlgl  111 (250)
T d1vcoa1          60 SGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGL  111 (250)
T ss_dssp             SCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCC
T ss_pred             CeEEecCCCCccchHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            35777778777653   4455543 579999999999999999988776554

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=95.99  E-value=0.00079  Score=58.26  Aligned_cols=27  Identities=15%  Similarity=0.158  Sum_probs=23.2

Q ss_pred             cCCCCeeeeehhHHHHHHHhCCccccc
Q psy12875        172 GVTFPVLGVCLGFELILQVSNNDTDFR  198 (308)
Q Consensus       172 ~~~~PilGiClG~Qll~~~~G~~v~~~  198 (308)
                      ...+|+||||+|||++++++||.+.+.
T Consensus       117 ~~~~~~lgiCwGaQa~~~~lgGi~k~~  143 (281)
T d2ghra1         117 TNVTSTLHICWGAQAGLYHHYGVQKYP  143 (281)
T ss_dssp             HHEEEEEEETHHHHHHHHHHHCCCCEE
T ss_pred             hcCCCeEEEcHHHHHHHHHhCCCcccc
Confidence            347899999999999999999977553

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0042  Score=53.39  Aligned_cols=51  Identities=14%  Similarity=0.279  Sum_probs=38.3

Q ss_pred             CCCCEEEEcCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCCccEEEechhhhHHHHH
Q psy12875         77 TQINGVVIPGGGTGFDHPNGYADAGRQILHLVDKINEEGVTFPVLGVCLGFELILQV  133 (308)
Q Consensus        77 ~~~dGlilpGG~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~PvlGIC~G~Qll~~~  133 (308)
                      +++|+|++|||......    ....+++.++++.+.+++  +||.+||+|-..|..+
T Consensus       140 ~dYdav~iPGGhG~~~d----L~~~~~l~~ll~~~~~~g--k~vaaICHGPa~Ll~a  190 (279)
T d1n57a_         140 SEYAAIFVPGGHGALIG----LPESQDVAAALQWAIKND--RFVISLCHGPAAFLAL  190 (279)
T ss_dssp             CSEEEEEECCSGGGGSS----GGGCHHHHHHHHHHHHTT--CEEEEETTGGGGGGGG
T ss_pred             ccccEEEecCCccchhh----hhHHHHHHHHHHHHHHcC--Ccceeccccchhhhhc
Confidence            37999999999632211    122356778888888855  9999999999988766

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=95.30  E-value=0.0026  Score=50.83  Aligned_cols=46  Identities=20%  Similarity=0.153  Sum_probs=29.7

Q ss_pred             eeeccceeeeeccccccCCCCCeEEEEEecCCCceEEEEEEecCCCEEEEeecCCccC
Q psy12875        239 THNNHIWCITRQDMIKYGLTETWNILTLSKYKSWEFVSTVEHKEYPIVGIQFHPEKNA  296 (308)
Q Consensus       239 v~~~H~~~v~~~~~~~~~l~~~~~via~s~~~~~~~v~ai~~~~~p~~GvQFHPE~~~  296 (308)
                      .++.|++.+..        ++.....++  +.+.+++++++.+  ++||+|||||++.
T Consensus       136 ~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~a~v~~~--ni~GvQFHPEkS~  181 (195)
T d1ka9h_         136 FYFANSYYGPL--------TPYSLGKGE--YEGTPFTALLAKE--NLLAPQFHPEKSG  181 (195)
T ss_dssp             EEEEESEECCC--------CTTCCEEEE--ETTEEEEEEEECS--SEEEESSCTTSSH
T ss_pred             cccccceeeec--------cccceeeee--cCCceEEEEEEcC--CEEEEeCCccccc
Confidence            46667776553        233323332  3345678888865  6999999999884

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.62  E-value=0.29  Score=40.08  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             ccchHHHHHHHHHHcCCeEEEEEcCCChhHHHHhcCCCCEEEEcCCCCCCCCCCchhHHHH--HHHHHHHHHHHcCCCcc
Q psy12875         42 TSYIAASYVKNIEAAGARVVPILIGQDREYYAEILTQINGVVIPGGGTGFDHPNGYADAGR--QILHLVDKINEEGVTFP  119 (308)
Q Consensus        42 ~~~i~~~~~~~l~~aG~~~~~i~~~~~~~~~~~~l~~~dGlilpGG~~~~~~~~~~~~~~~--~~~e~~~~~~~~g~~~P  119 (308)
                      +.|+ +.+.+.++..|.++..+....   +..+.++++|+|++.||..  .   .+.+..+  .+.+.+++++++|  .+
T Consensus        47 ~~y~-~~~~~~~~~l~~~v~~l~~~~---~~~~~l~~ad~I~v~GGn~--~---~l~~~l~~t~l~~~l~~~~~~G--~v  115 (229)
T d1fyea_          47 DEYT-DKTAEVLAPLGVNVTGIHRVA---DPLAAIEKAEIIIVGGGNT--F---QLLKESRERGLLAPMADRVKRG--AL  115 (229)
T ss_dssp             HHHH-HHHHHHHGGGTCEEEEGGGSS---CHHHHHHHCSEEEECCSCH--H---HHHHHHHHTTCHHHHHHHHHTT--CE
T ss_pred             hHHH-HHHHHHhhhcCceeEEecccc---cHHHHHhhCCEEEEcCCCH--H---HHHHHHHhCCHHHHHHHHHHcC--Ce
Confidence            4564 355677888899887664332   2344678899999999952  0   1222222  3567788888855  99


Q ss_pred             EEEechhhhHHHH
Q psy12875        120 VLGVCLGFELILQ  132 (308)
Q Consensus       120 vlGIC~G~Qll~~  132 (308)
                      +.|+-.|.-++..
T Consensus       116 i~G~SAGA~v~~~  128 (229)
T d1fyea_         116 YIGWSAGANLACP  128 (229)
T ss_dssp             EEEETHHHHHTSS
T ss_pred             EEEeChhHhhcCc
Confidence            9999999766553