Psyllid ID: psy1288
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1012 | 2.2.26 [Sep-21-2011] | |||||||
| O70196 | 710 | Prolyl endopeptidase OS=R | yes | N/A | 0.392 | 0.559 | 0.539 | 1e-138 | |
| Q9QUR6 | 710 | Prolyl endopeptidase OS=M | yes | N/A | 0.392 | 0.559 | 0.533 | 1e-138 | |
| P48147 | 710 | Prolyl endopeptidase OS=H | yes | N/A | 0.392 | 0.559 | 0.526 | 1e-134 | |
| P23687 | 710 | Prolyl endopeptidase OS=S | yes | N/A | 0.392 | 0.559 | 0.519 | 1e-132 | |
| Q9XTA2 | 710 | Prolyl endopeptidase OS=B | yes | N/A | 0.389 | 0.554 | 0.503 | 1e-126 | |
| Q06903 | 690 | Prolyl endopeptidase OS=A | no | N/A | 0.601 | 0.882 | 0.380 | 1e-125 | |
| P27028 | 705 | Prolyl endopeptidase OS=F | N/A | N/A | 0.600 | 0.862 | 0.350 | 1e-116 | |
| P27195 | 705 | Prolyl endopeptidase OS=E | N/A | N/A | 0.585 | 0.841 | 0.353 | 1e-111 | |
| Q86AS5 | 760 | Prolyl endopeptidase OS=D | yes | N/A | 0.384 | 0.511 | 0.383 | 9e-75 | |
| P55577 | 726 | Uncharacterized peptidase | yes | N/A | 0.307 | 0.428 | 0.322 | 1e-50 |
| >sp|O70196|PPCE_RAT Prolyl endopeptidase OS=Rattus norvegicus GN=Prep PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/452 (53%), Positives = 303/452 (67%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
YITNEG F FKTN+++PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YITNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+ +VKN++ LHDL +G L TFPLDVG++VG+SG+KK SEIFY F SFL P +I+HC+
Sbjct: 352 CYLRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T QVFYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----REELEPRVFREVTVKGIDASDYQTIQVFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT S RL I GGSNGGLL AAC NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
V+DMLKF+KFTIG+ W +
Sbjct: 580 ------------------------------------------VMDMLKFHKFTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+LL YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLLKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q+NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQSNPLLIHVDTKAGHGPGKPTAK 688
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has high activity on the succinyl- (suc-) peptide-4-methylcoumaryl-7-amide (MCA) substrates suc-Gly-Pro-Leu-Gly-Pro-MCA, suc-Gly-Pro-MCA and suc-Ala-Ala-Ala-MCA. Rattus norvegicus (taxid: 10116) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 6 |
| >sp|Q9QUR6|PPCE_MOUSE Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust.
Identities = 241/452 (53%), Positives = 301/452 (66%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+++PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN++ LHDL +G L TFPLDVG++VG+SG+KK SEIFY F SFL P +I+HC+
Sbjct: 352 CYLHDVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D + ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPMVFREVTVKGIDAADYQTIQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL AAC NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
V+DMLKF+KFTIG+ W +
Sbjct: 580 ------------------------------------------VMDMLKFHKFTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG FE+LL YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDTKQHFEWLLKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q+NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAK 688
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P48147|PPCE_HUMAN Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/452 (52%), Positives = 299/452 (66%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYR+I IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN++ LHDL +G L TFPLDVG+IVG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R GI A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL AAC NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLVKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q+NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAK 688
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P23687|PPCE_PIG Prolyl endopeptidase OS=Sus scrofa GN=PREP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/452 (51%), Positives = 296/452 (65%), Gaps = 55/452 (12%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG------- 579
Query: 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWES 612
++ +K FH K+TIG+ W +
Sbjct: 580 ----VMDMLK------FH--------------------------------KYTIGHAWTT 597
Query: 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672
DYG + FE+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HSLKF ATL
Sbjct: 598 DYGCSDSKQHFEWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
Q + Q NPLLI ++TKAGHG GKPT K
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q9XTA2|PPCE_BOVIN Prolyl endopeptidase OS=Bos taurus GN=PREP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/455 (50%), Positives = 288/455 (63%), Gaps = 61/455 (13%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHD+A+G L TFPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV +++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG ++
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYF 609
++ I H T C +N HF
Sbjct: 587 HKYTIGHAWTTDYGCSDNKQHF-------------------------------------- 608
Query: 610 WESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFA 669
E+L+ YSPLHN++ P E QYP+ LL+TADHDDRV P+HS KF
Sbjct: 609 --------------EWLIKYSPLHNVKLP-EADDIQYPSMLLLTADHDDRVVPLHSPKFI 653
Query: 670 ATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704
ATLQ + Q NPLLI ++TKAGHG GKPT K
Sbjct: 654 ATLQHLVGRSRKQNNPLLIHVDTKAGHGAGKPTAK 688
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q06903|PPCE_AERHY Prolyl endopeptidase OS=Aeromonas hydrophila PE=1 SV=2 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust.
Identities = 285/749 (38%), Positives = 385/749 (51%), Gaps = 140/749 (18%)
Query: 34 TKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRD 93
+ YP R++E L D Y G + DPY W+ED S ET+ +V +N +++ YL P RD
Sbjct: 5 ARLHYPVTRQSEQL-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNRVTQDYLAQIPFRD 63
Query: 94 KVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGE-ARVFLDPNNLS 152
+K +L W+Y K +P R+G +++FF N GLQN +V+ Q L G+ A VFLDPN LS
Sbjct: 64 AIKGKLATSWNYAKEGAPFREGRYHYFFKNDGLQNQNVLCGQ--LAGKPAEVFLDPNLLS 121
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DGT +L SFS DGKTLAY LS +GSDW +H DV + + L +KF I+W
Sbjct: 122 PDGTTALDQLSFSRDGKTLAYSLSLAGSDWREIHLMDVESKQPLETPLRDVKFSGISWL- 180
Query: 213 DHKGVFYSN------QEPKSKSKKH----------------------------------- 231
++G FYS+ E +++ +H
Sbjct: 181 GNEGFFYSSYDKPDGSELSARTDQHKLYFHRLGTAQEEDRLVFGAIPAQRHRYVGATVTE 240
Query: 232 ------------SKKNRSSAYHLTVNVAPITS---------QYITNEGPQFVFKTNKDAP 270
+ NR LT AP+ + + N+G + TN+DAP
Sbjct: 241 DDRYLLISAADSTSGNRLYVKDLTREGAPLLTVQGDLAADVSLVDNKGSRLYLLTNRDAP 300
Query: 271 NYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASG 330
N RL+T++ DN W+ LI E + VL L Y+ + D G
Sbjct: 301 NRRLVTVEADNPGPEQWRDLIPE-RQQVL--TVHSGGGYLFAEYMVDATARVEQFD-HDG 356
Query: 331 KHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFR 389
K + L +G++ GF+GK+ +++ F ++ QP ++ + +PNS S++R
Sbjct: 357 KRVREVGLPGLGSVSGFNGKQDDPALYFGFENYAQPPTLY------KFEPNSG-AISLYR 409
Query: 390 EIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG 449
P F P + ++Q FY SKDGT++P+ I RKG +LDG+NP ILYGYGGF VSL P
Sbjct: 410 ASAAP-FKPEDYVSEQRFYRSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPS 468
Query: 450 FSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509
FSV+ +L D G+YA+ N+RGGGEYG+ WH G +NKQNVFDDF AAEYL A GYT
Sbjct: 469 FSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTRMNKQNVFDDFIAAAEYLKAEGYT 527
Query: 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMF 569
++ RLAI+GGSNGGLL A + QRPDL A VG
Sbjct: 528 RTDRLAIRGGSNGGLLVGAVMTQRPDLMRVACQAVG------------------------ 563
Query: 570 HFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANS-SQFEYLLG 628
VLDML+++ FT G W DYG+ A+S + F+YL G
Sbjct: 564 -------------------------VLDMLRYHTFTAGAGWAYDYGTSADSEAMFDYLKG 598
Query: 629 YSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLI 688
YSPLH+++ G YP+TL+ TADHDDRV P HS KFAATLQ PH P LI
Sbjct: 599 YSPLHSVRA-----GVSYPSTLVTTADHDDRVVPAHSFKFAATLQADDAG-PH---PQLI 649
Query: 689 RIETKAGHGGGKPTTKQFPLTIPVIYFYL 717
RIET AGHG G P K + + F L
Sbjct: 650 RIETNAGHGAGTPVAKLIEQSADIYAFTL 678
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Aeromonas hydrophila (taxid: 644) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27028|PPCE_FLAME Prolyl endopeptidase OS=Flavobacterium meningosepticum GN=f1pep1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 261/745 (35%), Positives = 371/745 (49%), Gaps = 137/745 (18%)
Query: 36 FEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKV 95
+YP+ +K S D Y G ++ DPY W+ED +E+TK +V +E ++ YL P RD++
Sbjct: 26 LKYPETKK-VSHTDTYFGTQVSDPYRWLEDDRAEDTKAWVQQEVKFTQDYLAQIPFRDQL 84
Query: 96 KAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG 155
K +L +W+Y K S+P ++G + +F N GLQ SV+Y +D+ G+ VFLDPN S+ G
Sbjct: 85 KKQLMDIWNYEKISAPFKKGKYTYFSKNDGLQAQSVLYRKDAA-GKTEVFLDPNKFSEKG 143
Query: 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215
T SL S SF++ G +AY +S GSDW + D T K+ E L +KF I+W D
Sbjct: 144 TTSLASVSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQLDETLLDVKFSGISWLGDE- 202
Query: 216 GVFYSN-QEPKSKSKKHSKKNRSSAY---------------------------------- 240
G FYS+ +PK S ++ Y
Sbjct: 203 GFFYSSYDKPKEGSVLSGMTDKHKVYFHKLGTKQSQDELIIGGDKFPRRYIGAYVTDDQR 262
Query: 241 HLTVNVA--------------------PITSQYITN------EGPQFVFKTNKDAPNYRL 274
+L V+ A PI + + +N +G T+KDAPN RL
Sbjct: 263 YLVVSAANATNGNELYIKDLKNKTDFIPIITGFDSNVNVADTDGDTLYLFTDKDAPNKRL 322
Query: 275 ITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334
+ N WK +I E + + +Y+ + + +D +GK +
Sbjct: 323 VKTTIQNPKAETWKDVIAETSEPL---EINTGGGYFFATYMKDAIDQVKQYD-KNGKLVR 378
Query: 335 TFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKV 393
L G GF G+K +++YSF +++ P IF N+ + ++++ KV
Sbjct: 379 AIKLPGSGNASGFGGEKTEKDLYYSFTNYITPPTIFKYNVTTG-------NSEVYQKPKV 431
Query: 394 PDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT 453
F+P + ++QVFY S DGTKIPM I +KG + DG NP ILY YGGF +SLQP FSV
Sbjct: 432 K-FNPENYVSEQVFYTSSDGTKIPMMISYKKGLKKDGKNPTILYSYGGFNISLQPAFSVV 490
Query: 454 KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSR 513
+++ + GIYA+PNIRGGGEYG++WHD G + K+NVF+DF A EYL +GYT
Sbjct: 491 NAIWMEN-GGIYAVPNIRGGGEYGKKWHDAGTKMQKKNVFNDFIAAGEYLQKNGYTSKEY 549
Query: 514 LAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCD 573
+A+ G SNGGLL A + RPDL A VG
Sbjct: 550 MALSGRSNGGLLVGATMTMRPDLAKVAFPGVG---------------------------- 581
Query: 574 LDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQ-FEYLLGYSPL 632
VLDML++NKFT G W DYG+ +S + FEYL YSP+
Sbjct: 582 ---------------------VLDMLRYNKFTAGAGWAYDYGTAEDSKEMFEYLKSYSPV 620
Query: 633 HNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIET 692
HN++ G YP+T+++T+DHDDRV P HS KF + LQ K NP+LIRIET
Sbjct: 621 HNVKA-----GTCYPSTMVITSDHDDRVVPAHSFKFGSELQAK----QSCKNPILIRIET 671
Query: 693 KAGHGGGKPTTKQFPLTIPVIYFYL 717
AGHG G+ T + ++ F L
Sbjct: 672 NAGHGAGRSTEQVVAENADLLSFAL 696
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Flavobacterium meningosepticum (taxid: 238) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27195|PPCF_ELIMR Prolyl endopeptidase OS=Elizabethkingia miricola PE=1 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust.
Identities = 258/730 (35%), Positives = 369/730 (50%), Gaps = 137/730 (18%)
Query: 36 FEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKV 95
+YP+ +K + D Y G ++ DPY W+ED +E+TK +V +E ++ YL P R ++
Sbjct: 26 LKYPETKK-VNHTDTYFGNQVSDPYRWLEDDRAEDTKAWVQQEVKFTQDYLAQIPFRGQI 84
Query: 96 KAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG 155
K +L +W+Y K S+P ++G + +F+ N GLQ SV+Y +D+ G+ VFLDPN SD G
Sbjct: 85 KKQLLDIWNYEKISAPFKKGKYTYFYKNDGLQAQSVLYRKDA-SGKTEVFLDPNKFSDKG 143
Query: 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215
T SL + SF++ G +AY +S GSDW + D T K+ E L +KF I+W D
Sbjct: 144 TTSLANLSFNKKGTLVAYSISEGGSDWNKIIILDAETKKQIDETLLDVKFSGISWLGDE- 202
Query: 216 GVFYSN-QEPKSKSKKHSKKNRSSAY---------------------------------- 240
G FYS+ +PK S ++ Y
Sbjct: 203 GFFYSSYDKPKDGSVLSGMTDKHKVYFHKLGTKQSQDELIIGGDKFPRRYLSGYVTEDQR 262
Query: 241 HLTVNVA--------------------PITSQYITN------EGPQFVFKTNKDAPNYRL 274
+L V+ A PI + + +N +G T+K+APN R+
Sbjct: 263 YLVVSAANATNGNELYIKDLKNKTDFIPIITGFESNVGLVDTDGDTLFLHTDKNAPNMRM 322
Query: 275 ITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334
+ N WK +I E + + +Y+ + + +D +GK +
Sbjct: 323 VKTTIQNPKPETWKDVIAETSEPM---RVNSGGGYFFATYMKDALSQIKQYD-KTGKLVR 378
Query: 335 TFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKV 393
L GT GF G+K E++YSF +++ P IF +I + ++ ++++ KV
Sbjct: 379 EIKLPGSGTAGGFGGEKTEKELYYSFTNYITPPTIFKFSIDSG-------KSEVYQKPKV 431
Query: 394 PDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT 453
F+P + ++QVFY S DGTKIPM I ++KG + DG NP ILY YGGF +SLQP FSV
Sbjct: 432 K-FNPENYVSEQVFYTSADGTKIPMMISNKKGLKKDGKNPTILYSYGGFNISLQPAFSVV 490
Query: 454 KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSR 513
+++ + GIYA+PNIRGGGEYG++WHD G K+NVF+DF A EYL +GYT
Sbjct: 491 NAIWMEN-GGIYAVPNIRGGGEYGKKWHDAGTKQQKKNVFNDFIAAGEYLQKNGYTSKDY 549
Query: 514 LAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCD 573
+A+ G SNGGLL A + RPDL A VG
Sbjct: 550 MALSGRSNGGLLVGATMTMRPDLAKVAFPGVG---------------------------- 581
Query: 574 LDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQ-FEYLLGYSPL 632
VLDML++NKFT G W DYG+ +S + FEYL YSP+
Sbjct: 582 ---------------------VLDMLRYNKFTAGAGWAYDYGTAEDSKEMFEYLKSYSPV 620
Query: 633 HNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIET 692
HN++ G YP+T+++T+DHDDRV P HS KF A LQ K NP+LIRIET
Sbjct: 621 HNVKA-----GTCYPSTMVITSDHDDRVVPAHSFKFGAELQAK----QACKNPVLIRIET 671
Query: 693 KAGHGGGKPT 702
AGHG G+ T
Sbjct: 672 NAGHGAGRST 681
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Elizabethkingia miricola (taxid: 172045) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q86AS5|PPCE_DICDI Prolyl endopeptidase OS=Dictyostelium discoideum GN=prep PE=1 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 246/464 (53%), Gaps = 75/464 (16%)
Query: 253 YITN-EGPQFVFKTNKDAPNYRLITIDFDN--------FAESNWKTLIEENKDDVLDWAT 303
YITN + ++ F TN AP RLI+I ++ ++ +K +I E KD VL+ +
Sbjct: 340 YITNTKQGEYFFLTNLSAPFNRLISIQLNDDQPIVPNSKSKLEFKEIIPE-KDYVLESVS 398
Query: 304 CVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFL 363
+ +K +SY HV++++ ++D +GK+L L S + + IF +F + +
Sbjct: 399 RSSQEKFYVSYQKHVQDIIEVYDF-NGKYLKDIKLPGPGSASLSATEYHDHIFINFSNLV 457
Query: 364 QPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPS-KDGTKIPMFILS 422
P++ ++ + ++ D E +F+E + F S +E KQVFY S KD TKIPMFI
Sbjct: 458 SPSVTYY--MDSKND-----ELLLFKEPHIEGFKSSDYECKQVFYESPKDKTKIPMFIAY 510
Query: 423 RKGAQL-DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481
+K + GN P + GYGGF +S FS+ I FL FNGI+ I NIRGGGEYG+ WH
Sbjct: 511 KKTTDITSGNAPTYMTGYGGFNISYTQSFSIRNIYFLNKFNGIFVIANIRGGGEYGKAWH 570
Query: 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541
+ G NKQN FDDF AAEYLI YT ++LA++GGSNGGLL A NQRPDLF +
Sbjct: 571 EAGSKKNKQNCFDDFIGAAEYLIKENYTNQNKLAVRGGSNGGLLMGAISNQRPDLFKCVV 630
Query: 542 VQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKF 601
VG V+DML+F
Sbjct: 631 ADVG-------------------------------------------------VMDMLRF 641
Query: 602 NKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVS 661
+ TIG W SDYG N F+ L+ YSPL+N+ P + QYP+ +L T DHDDRV
Sbjct: 642 HLHTIGSNWVSDYGRSDNPDDFDVLIKYSPLNNV--PKD--SNQYPSIMLCTGDHDDRVI 697
Query: 662 PVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ 705
P HS KF + LQ +L PLLIR++ +GHG GK +KQ
Sbjct: 698 PAHSYKFISELQYQLG--KKVDTPLLIRVDKDSGHGAGKGLSKQ 739
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P55577|Y4NA_RHISN Uncharacterized peptidase y4nA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02410 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/375 (32%), Positives = 179/375 (47%), Gaps = 64/375 (17%)
Query: 302 ATCVANDKLILSYIHHVKNVMHLHDLASGK-HLYTFPLDVGTIVGFSGKKKYSEIFYSFM 360
T ++L+LS + +V + + D G + L + + + S+ + F
Sbjct: 371 GTTQTKNRLVLSILSNVTSEVRSFDFGKGGWSSFKLALPENSTLSLTSSDDESDQLFVFS 430
Query: 361 -SFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMF 419
FL+P+ +F + A K+ ++ R FD + +Q + SKDGTK+P F
Sbjct: 431 EGFLEPSTLFCAD--AATGQVEKITSTPAR------FDAGGLQAQQFWATSKDGTKVPYF 482
Query: 420 ILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479
+++RK +LDG NP ILY YGGF + +QP +S + G YA+ NIRGGGE+G +
Sbjct: 483 LVARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFGPK 542
Query: 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGA 539
WHD G N+Q V+DDFQ A+ LIA T + L I GGSNGGLL + QRPDL+ A
Sbjct: 543 WHDAGLKTNRQRVYDDFQAVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLWNA 602
Query: 540 AIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDML 599
++QV PL LDM+
Sbjct: 603 VVIQV------------------------------------------PL-------LDMV 613
Query: 600 KFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDR 659
F + + G W+++YGSP + + +L SP HN++ G YP T+ DDR
Sbjct: 614 NFTRMSAGASWQAEYGSPDDPVEGAFLRSISPYHNVKA-----GVAYPEPFFETSTKDDR 668
Query: 660 VSPVHSLKFAATLQE 674
V PVH+ K AA ++
Sbjct: 669 VGPVHARKMAALFED 683
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1012 | ||||||
| 332024972 | 647 | Prolyl endopeptidase [Acromyrmex echinat | 0.619 | 0.969 | 0.499 | 0.0 | |
| 380014010 | 765 | PREDICTED: prolyl endopeptidase-like [Ap | 0.621 | 0.822 | 0.472 | 0.0 | |
| 350417638 | 763 | PREDICTED: prolyl endopeptidase-like [Bo | 0.621 | 0.824 | 0.472 | 0.0 | |
| 66505780 | 765 | PREDICTED: prolyl endopeptidase-like iso | 0.621 | 0.822 | 0.471 | 0.0 | |
| 340712277 | 763 | PREDICTED: prolyl endopeptidase-like [Bo | 0.621 | 0.824 | 0.467 | 0.0 | |
| 321468258 | 708 | hypothetical protein DAPPUDRAFT_304946 [ | 0.607 | 0.868 | 0.464 | 0.0 | |
| 307177097 | 706 | Prolyl endopeptidase [Camponotus florida | 0.617 | 0.885 | 0.452 | 0.0 | |
| 405972967 | 706 | Prolyl endopeptidase [Crassostrea gigas] | 0.617 | 0.885 | 0.453 | 0.0 | |
| 194766113 | 734 | GF23775 [Drosophila ananassae] gi|190617 | 0.615 | 0.848 | 0.442 | 1e-176 | |
| 291227779 | 716 | PREDICTED: prolyl endopeptidase-like [Sa | 0.605 | 0.856 | 0.460 | 1e-175 |
| >gi|332024972|gb|EGI65159.1| Prolyl endopeptidase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/697 (49%), Positives = 460/697 (65%), Gaps = 70/697 (10%)
Query: 34 TKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRD 93
T+ +YP+AR++ES+VD+YHGVKI DPY W+EDPDS ETK FVD +NAI++PYL RD
Sbjct: 3 TRIQYPEARRDESVVDDYHGVKISDPYRWLEDPDSPETKAFVDAQNAITKPYLTACKARD 62
Query: 94 KVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSD 153
+ L ++WD+PKYS P + G+ Y+F+ N+GLQN SV+Y+QD+L+ E +VFLDPN S+
Sbjct: 63 DIHDRLKQLWDFPKYSCPAKHGEKYYFYKNSGLQNQSVLYVQDTLESEPKVFLDPNTFSE 122
Query: 154 DGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHD 213
DGTV++ S SF+EDG AY LS SGSDW ++HF + TG++Y E+L ++KF SI WTHD
Sbjct: 123 DGTVAITSSSFTEDGSIFAYGLSKSGSDWRTIHFLNAHTGEKYSEILEKVKFSSITWTHD 182
Query: 214 HKGVFYS---NQEPKSK-SKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQ-------FV 262
++G+FY +Q+ K+ S+ +N+ YH+ + + E P+ V
Sbjct: 183 NRGIFYGQYRDQQGKTDGSETLGNENQKLCYHVVGTSQ--SDDVVAVEFPEEPLWRIKAV 240
Query: 263 FKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVM 322
F+TNK+APNY+LI ID ++ + W L+ E+ ++VLDWA V DK + YI VKN++
Sbjct: 241 FRTNKNAPNYKLIAIDLLDYEQHKWVDLLPEHPENVLDWAEAVDGDKFVACYIQDVKNIL 300
Query: 323 HLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSK 382
LH L +GK L +FPLD+GT+VGFSG+KKYSEIFY F SFL P II+ ++ +P
Sbjct: 301 QLHCLNTGKVLRSFPLDLGTVVGFSGEKKYSEIFYQFTSFLTPGIIYTIDLKKEEEPR-- 358
Query: 383 LETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGF 442
I REIKV DFD SL++T Q+FY SKD TK+PMFI++R A LDG P +LYGYGGF
Sbjct: 359 ----ILREIKVKDFDASLYKTSQIFYKSKDSTKVPMFIVTRNDATLDGTMPGLLYGYGGF 414
Query: 443 AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEY 502
S+QP FSVT++VF++ FNG+ A+ N+RGGGEYGERWH+ GR N+QN FDDFQ AA+Y
Sbjct: 415 NASIQPTFSVTRLVFIQHFNGVLAVANVRGGGEYGERWHNAGRFFNRQNAFDDFQYAAKY 474
Query: 503 LIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMK 562
L+ +GYT S++L IQGGSNGGL C+NQRPDLFGAAI QVG
Sbjct: 475 LVENGYTTSAKLTIQGGSNGGLAVGVCVNQRPDLFGAAIAQVG----------------- 517
Query: 563 DCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQ 622
V+DML+F+KFTIG W SDYG+P +
Sbjct: 518 --------------------------------VMDMLRFHKFTIGSAWVSDYGNPDDPKH 545
Query: 623 FEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQ 682
FE LL YSPLHN++ P + QYPA LL+TADHDDRV P+H+LK ATLQ L + Q
Sbjct: 546 FENLLKYSPLHNVRIPQD--DIQYPAMLLLTADHDDRVVPLHTLKLTATLQYTLGNVSKQ 603
Query: 683 TNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719
NPL +I+TKAGHG GKPT K + ++ F S
Sbjct: 604 KNPLFAKIDTKAGHGSGKPTMKMIEESTDILSFIAQS 640
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380014010|ref|XP_003691037.1| PREDICTED: prolyl endopeptidase-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/760 (47%), Positives = 462/760 (60%), Gaps = 131/760 (17%)
Query: 31 KAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHP 90
K M K +YP+A ++ES++D YHG+++ DPY W+EDPDSE+TK FVD +N+I+ PYL
Sbjct: 59 KKMEKLQYPEAYRDESIIDNYHGIEVQDPYRWLEDPDSEKTKAFVDAQNSITTPYLTSCK 118
Query: 91 DRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNN 150
R + L ++WD+PKYS P R G+ Y+F+ NTGLQN SV+Y+QD+LD E RVFLDPN
Sbjct: 119 ARQDIHDRLKQLWDFPKYSCPARYGNKYYFYKNTGLQNQSVLYVQDTLDSEPRVFLDPNT 178
Query: 151 LSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAW 210
LS+DGT+++ FSEDG A+ LS+SGSDW ++HF + TG++YPE+L ++KF I W
Sbjct: 179 LSEDGTIAITISKFSEDGSIYAFGLSASGSDWCTIHFMNTETGEKYPEILEKVKFSPITW 238
Query: 211 THDHKGVFYS---NQEPKSK-SKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQ------ 260
THD+ G+FY +Q+ K+ S+ +++ YH+ P + I E P+
Sbjct: 239 THDNCGIFYGCYPDQKGKTDGSETEGNRDQKLCYHII--GTPQSEDIIVVEFPEEPLWRI 296
Query: 261 ----------FVFKTNKDA-----------PNYRL------------ITIDFDNFAESNW 287
+ KD P ++ + D++ +
Sbjct: 297 GAQVSDCGKWLIVTPVKDCRDNLVYFTELKPEIKIKEKLHLTQVVDKLEADYEYVTNDDT 356
Query: 288 KTLIEENKD---------DVLDW-------------------ATCVANDKLILSYIHHVK 319
K + NK+ D+LD+ A V DK + YI HVK
Sbjct: 357 KAIFRTNKNAPNYKLIAIDLLDYKQEKWVDLLPEHPDNVLDWACAVDGDKFVACYIEHVK 416
Query: 320 NVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDP 379
N++ LH L SG L TFPLDVGTIV F+G+KKYSEIFY F SFL P II+ RVD
Sbjct: 417 NILQLHSLKSGDILRTFPLDVGTIVNFAGQKKYSEIFYQFKSFLIPGIIY------RVDL 470
Query: 380 NSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGY 439
++ E I REIKV +FDPSL++T Q+FY SKDGTKIPMFI+ + A LDG+ P +LYGY
Sbjct: 471 KNEEEPQILREIKVKNFDPSLYKTSQIFYTSKDGTKIPMFIVMKHDAVLDGSMPALLYGY 530
Query: 440 GGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA 499
GGF VS+QP FSVTK+VF++ NG+ A+ NIRGGGEYGE+WH+GGR NKQNVFDDFQ A
Sbjct: 531 GGFNVSIQPTFSVTKLVFVQHLNGVLAVANIRGGGEYGEKWHNGGRFFNKQNVFDDFQTA 590
Query: 500 AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559
AEYLI +GYT SS+L+I G SNGGLL AACINQRPDLFGAAI QVG
Sbjct: 591 AEYLIENGYTTSSKLSILGASNGGLLIAACINQRPDLFGAAIAQVG-------------- 636
Query: 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN 619
V+DML+F+KFTIG W SDYGS +
Sbjct: 637 -----------------------------------VMDMLRFHKFTIGVAWVSDYGSSDD 661
Query: 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDY 679
S FE L+ YSPLHN++ P+ QYPATLL+TADHDDRV P+HSLK ATLQ L
Sbjct: 662 SKHFENLIKYSPLHNVRVPE---NGQYPATLLLTADHDDRVVPLHSLKLIATLQYTLGKL 718
Query: 680 PHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719
P QTNPLLI+IETKAGHGGGKPT K + ++ F + S
Sbjct: 719 PQQTNPLLIKIETKAGHGGGKPTMKVIEESTDILAFIVKS 758
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350417638|ref|XP_003491520.1| PREDICTED: prolyl endopeptidase-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/760 (47%), Positives = 461/760 (60%), Gaps = 131/760 (17%)
Query: 31 KAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHP 90
K M K +YP+A ++E++VD YHGV++ D Y W+EDPDSE+TK FVD +NA++ PYL
Sbjct: 57 KIMEKLQYPEAYRDETIVDNYHGVEVQDSYRWLEDPDSEKTKAFVDAQNAVTIPYLASCK 116
Query: 91 DRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNN 150
R + L ++WD+PKYS P R G+ Y+F+ NTGLQN SV+Y+QD+LD E R+FLDPN
Sbjct: 117 ARQDIHDRLKQLWDFPKYSCPARYGNKYYFYKNTGLQNQSVLYVQDTLDSEPRIFLDPNT 176
Query: 151 LSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAW 210
LS+DGT+++ S FSEDG AY LS SGSDW ++HF + TG++YPE+L ++KF I W
Sbjct: 177 LSEDGTIAITSSKFSEDGSIYAYGLSISGSDWCTIHFMNTETGEKYPEILEKVKFSPITW 236
Query: 211 THDHKGVFYS---NQEPKSK-SKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQ------ 260
THD++G+FY +Q+ K+ S+ +++ YH+ P + I E P+
Sbjct: 237 THDNRGIFYGCYPDQKGKTDGSETEGNRDQKLCYHIV--GTPQSEDVIVVEFPEEPLWRI 294
Query: 261 ----------------------FVFKTN-----KDAPNYRLITI------DFDNFAESNW 287
V+ T K A +LI + D++ +
Sbjct: 295 GAQVSDCGKWLIVTPVKDCRDNLVYFTELKPEKKIAEKLQLIQVVDKLEADYEYVTNDDT 354
Query: 288 KTLIEENKD---------DVLD-------------------WATCVANDKLILSYIHHVK 319
K + NK+ D+LD WA V DK + YI VK
Sbjct: 355 KAIFRTNKNAPNYKLIAIDLLDYKQEKWVDLLPEHPDNVLDWACAVDGDKFVACYIADVK 414
Query: 320 NVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDP 379
N++ LH L SG+ L FPLDVGTIV F+G+KKYSEIFY F SFL P II+ RVD
Sbjct: 415 NILQLHSLTSGEKLRIFPLDVGTIVNFAGQKKYSEIFYQFKSFLVPGIIY------RVDL 468
Query: 380 NSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGY 439
++ E + REIKV +FDPSL++T Q+FY SKDGTKIPMFI+ + A LDG+ P +LYGY
Sbjct: 469 KNEEEPQVLREIKVKNFDPSLYKTSQIFYTSKDGTKIPMFIVMKHDAVLDGSMPALLYGY 528
Query: 440 GGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA 499
GGF VS+QP FSVTK+VF++ NG+ A+ NIRGGGEYGE+WH+GGR NKQNVFDDFQ A
Sbjct: 529 GGFNVSIQPTFSVTKLVFVQHLNGVLAVANIRGGGEYGEKWHNGGRFFNKQNVFDDFQAA 588
Query: 500 AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559
AEYL+ GYT SS+L+I G SNGGLL AAC+NQRPDLFGAAI QVG
Sbjct: 589 AEYLVEKGYTTSSKLSILGASNGGLLVAACVNQRPDLFGAAIAQVG-------------- 634
Query: 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN 619
V+DML+F+KFTIG W SDYGS +
Sbjct: 635 -----------------------------------VMDMLRFHKFTIGVAWVSDYGSSDD 659
Query: 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDY 679
FE LL YSPLHN++ P+ QYPATLL+TADHDDRV P+HSLK ATLQ L
Sbjct: 660 PKHFENLLKYSPLHNVRIPE---NGQYPATLLLTADHDDRVVPLHSLKLIATLQCTLGKL 716
Query: 680 PHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719
P QTNPLLI+IETKAGHGGGKPT K + ++ F + S
Sbjct: 717 PQQTNPLLIKIETKAGHGGGKPTMKVIEESTDILAFIVKS 756
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66505780|ref|XP_395364.2| PREDICTED: prolyl endopeptidase-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/760 (47%), Positives = 462/760 (60%), Gaps = 131/760 (17%)
Query: 31 KAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHP 90
K M K +YP+A ++ES++D YHG+++ DPY W+EDPDSE+TK FVD +N+I+ PYL
Sbjct: 59 KKMEKLQYPEAYRDESIIDNYHGIEVQDPYRWLEDPDSEKTKAFVDAQNSITTPYLTSCK 118
Query: 91 DRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNN 150
R + L ++WD+PKYS P R G+ Y+F+ NTGLQN SV+Y+QD+LD E RVFLDPN
Sbjct: 119 ARQDIHDRLKQLWDFPKYSCPARYGNKYYFYKNTGLQNQSVLYVQDTLDSEPRVFLDPNT 178
Query: 151 LSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAW 210
LS+DGT+++ FSEDG A+ LS+SGSDW ++HF + TG++YPE+L ++KF I W
Sbjct: 179 LSEDGTIAITISKFSEDGSIYAFGLSASGSDWCTIHFMNTETGEKYPEILEKVKFSPITW 238
Query: 211 THDHKGVFYS---NQEPKSK-SKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQ------ 260
THD+ G+FY +Q+ K+ S+ +++ YH+ P + I E P+
Sbjct: 239 THDNYGIFYGCYPDQKGKTDGSETEGNRDQKLCYHII--GTPQSEDIIVVEFPEEPLWRI 296
Query: 261 ----------FVFKTNKDA-----------PNYRL------------ITIDFDNFAESNW 287
+ KD P ++ + D++ +
Sbjct: 297 GAQVSDCGKWLIVTPVKDCRDNLVYFTELKPEMKIREKLHLTQVVDKLEADYEYVTNDDT 356
Query: 288 KTLIEENKD---------DVLDW-------------------ATCVANDKLILSYIHHVK 319
K + NK+ D+LD+ A V DK + YI HVK
Sbjct: 357 KAIFRTNKNAPNYKLIAIDLLDYKQEKWVDLLPEHPDNVLDWACAVDGDKFVACYIEHVK 416
Query: 320 NVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDP 379
N++ LH L SG L TFPLDVGTIV F+G+KKYSEIFY F SFL P II+ RVD
Sbjct: 417 NILQLHSLKSGDILRTFPLDVGTIVNFAGQKKYSEIFYQFKSFLIPGIIY------RVDL 470
Query: 380 NSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGY 439
++ E + REIKV +FDPSL++T Q+FY SKDGTKIPMFI+ + A LDG+ P +LYGY
Sbjct: 471 KNEEEPQVLREIKVKNFDPSLYKTSQIFYTSKDGTKIPMFIVMKHDAVLDGSMPALLYGY 530
Query: 440 GGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA 499
GGF VS+QP FSVTK+VF++ NG+ A+ NIRGGGEYGE+WH+GGR NKQNVFDDFQ A
Sbjct: 531 GGFNVSIQPTFSVTKLVFVQHLNGVLAVANIRGGGEYGEKWHNGGRFFNKQNVFDDFQTA 590
Query: 500 AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559
AEYLI +GYT SS+L+I G SNGGLL AACINQRPDLFGAAI QVG
Sbjct: 591 AEYLIENGYTTSSKLSILGASNGGLLIAACINQRPDLFGAAIAQVG-------------- 636
Query: 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN 619
V+DML+F+KFTIG W SDYGS +
Sbjct: 637 -----------------------------------VMDMLRFHKFTIGVAWVSDYGSSDD 661
Query: 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDY 679
S FE L+ YSPLHN++ P+ QYPATLL+TADHDDRV P+HSLK ATLQ L
Sbjct: 662 SKHFENLIKYSPLHNVRVPE---NGQYPATLLLTADHDDRVVPLHSLKLIATLQYTLGKL 718
Query: 680 PHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719
P QTNPLLI+IETKAGHGGGKPT K + ++ F + S
Sbjct: 719 PQQTNPLLIKIETKAGHGGGKPTMKVIEESTDILAFIVKS 758
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340712277|ref|XP_003394688.1| PREDICTED: prolyl endopeptidase-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/760 (46%), Positives = 459/760 (60%), Gaps = 131/760 (17%)
Query: 31 KAMTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHP 90
K M K +YP+A ++E++VD YHGV++ D Y W+EDPDSE+TK FVD +N+++ PYL
Sbjct: 57 KIMEKLQYPEAYRDETIVDNYHGVEVQDSYRWLEDPDSEKTKAFVDAQNSVTIPYLASCK 116
Query: 91 DRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNN 150
R + L ++WD+PKYS P R G+ Y+F+ NTGLQN SV+Y+QD+LD E R+FLDPN
Sbjct: 117 ARQDIHDRLKQLWDFPKYSCPARYGNKYYFYKNTGLQNQSVLYVQDTLDSEPRIFLDPNT 176
Query: 151 LSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAW 210
S+DGT+++ S FSEDG AY LS SGSDW ++HF + TG++YPE+L ++KF I W
Sbjct: 177 FSEDGTIAITSSKFSEDGSIYAYGLSISGSDWCTIHFMNTETGEKYPEILEKVKFSPITW 236
Query: 211 THDHKGVFYS---NQEPKSK-SKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQ------ 260
THD++G+FY +Q+ K+ S+ +++ YH+ P + I E P+
Sbjct: 237 THDNRGIFYGCYPDQKGKTDGSETEGNRDQKLCYHIV--GTPQSEDVIVVEFPEEPLWRI 294
Query: 261 ----------------------FVFKTN-----KDAPNYRLITI------DFDNFAESNW 287
V+ T K A +L + D++ +
Sbjct: 295 GAQVSDCGKWLIVTPVKDCRDNLVYFTELKPEKKIAEKLQLTQVVDKLEADYEYVTNDDT 354
Query: 288 KTLIEENKD---------DVLDW-------------------ATCVANDKLILSYIHHVK 319
K + NK+ D+LD+ A V DK + YI VK
Sbjct: 355 KAIFRTNKNAPNYKLIAIDLLDYKQEKWVDLLPEHPDNVLDWACAVDGDKFVACYIADVK 414
Query: 320 NVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDP 379
N++ LH L SG+ L FPLDVGTIV F+G+KKYSEIFY F SFL P II+ RVD
Sbjct: 415 NILQLHSLTSGEKLRIFPLDVGTIVNFAGQKKYSEIFYQFKSFLVPGIIY------RVDL 468
Query: 380 NSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGY 439
++ E + REIKV +FDPSL++T Q+FY SKDGTKIPMFI+ + A LDG+ P +LYGY
Sbjct: 469 KNEEEPQVLREIKVKNFDPSLYKTSQIFYTSKDGTKIPMFIVMKHDAVLDGSMPALLYGY 528
Query: 440 GGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA 499
GGF VS+QP FSVTK+VF++ NG+ A+ NIRGGGEYGE+WH+GGR NKQNVFDDFQ A
Sbjct: 529 GGFNVSIQPTFSVTKLVFVQHLNGVLAVANIRGGGEYGEKWHNGGRFFNKQNVFDDFQAA 588
Query: 500 AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559
AEYL+ GYT SS+L+I G SNGGLL AAC+NQRPDLFGAAI QVG
Sbjct: 589 AEYLVEKGYTTSSKLSILGASNGGLLVAACVNQRPDLFGAAIAQVG-------------- 634
Query: 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN 619
V+DML+F+KFTIG W SDYGS +
Sbjct: 635 -----------------------------------VMDMLRFHKFTIGVAWVSDYGSSDD 659
Query: 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDY 679
FE LL YSPLHN++ P+ QYPATLL+TADHDDRV P+HSLK ATLQ L
Sbjct: 660 PKHFENLLKYSPLHNVRIPE---NGQYPATLLLTADHDDRVVPLHSLKLIATLQCTLGKL 716
Query: 680 PHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719
P QTNPLLI+IETKAGHGGGKPT K + ++ F + S
Sbjct: 717 PQQTNPLLIKIETKAGHGGGKPTMKVIEESTDILAFIVKS 756
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321468258|gb|EFX79244.1| hypothetical protein DAPPUDRAFT_304946 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/743 (46%), Positives = 450/743 (60%), Gaps = 128/743 (17%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M+ F YP A++ + + HG+ + DPY W+EDPDS ET++FV +N ++ PY++ P
Sbjct: 1 MSSFTYPIAKRTD-FSENLHGIAVEDPYRWLEDPDSAETQEFVRLQNELTTPYIQGSPAL 59
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
+K LT++W++PKYS P ++G+HYFF+ N+GLQNHSV+++QDSL+ E R+FLDPN LS
Sbjct: 60 SSIKTRLTELWNFPKYSCPTKKGNHYFFYKNSGLQNHSVLFVQDSLESEPRIFLDPNTLS 119
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
DDGTVSL FSEDG+ AY LS SGSDW S+HFK V TG+++PEVL ++KF SI+WTH
Sbjct: 120 DDGTVSLSMKKFSEDGEIFAYGLSQSGSDWNSIHFKCVKTGEDFPEVLEKIKFSSISWTH 179
Query: 213 DHKGVFYS----NQEPKSKSKKHSKKNRSSAYH----------LTVNVAPITSQYI---- 254
D KGVFYS Q S+ S +N YH L V + I
Sbjct: 180 DRKGVFYSCYPEQQGKTDGSETTSNENHKLFYHRIGTQQSEDILVVEFSEEPKWRIQGGV 239
Query: 255 TNEGPQFVFKTNKDA-------------PN------YRLITI------DFDNFAESNWKT 289
T+ G + T +D PN L T+ D++ +
Sbjct: 240 TDCGRYLIVTTGRDCQYNNVYFCDLTALPNQAISGKLELTTVVDKMEADYEYVTNTGAVV 299
Query: 290 LIEENKD--------------DVLDWATCVAND--------------KLILSYIHHVKNV 321
+ NKD + W T + D KLI+ Y+H VKN+
Sbjct: 300 VFRTNKDAPNYRLIQIDFNQPEREQWKTLLEADPSDVLDWVACINKDKLIVCYMHDVKNI 359
Query: 322 MHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNS 381
+ L DL +G+ L T+ L++GT+ FSGK SE F+ F SFL P +I+ C+I V+
Sbjct: 360 LQLRDLQNGQLLKTYALEMGTVREFSGKNTSSEFFFQFGSFLTPGVIYRCDIGESVEA-- 417
Query: 382 KLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG 441
E ++FR+I++ FDPSLFET+QVFYPSKDGT+IPMFI+ +K LDG NPC++YGYGG
Sbjct: 418 --EPTVFRQIELNGFDPSLFETQQVFYPSKDGTRIPMFIVKKKTVVLDGTNPCLMYGYGG 475
Query: 442 FAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAE 501
F +SL+P FSVT+IVF++ FNG++A+PNIRGGGEYGE WHDGGRL NKQN FDDF AAE
Sbjct: 476 FNISLEPAFSVTRIVFMQHFNGVFAVPNIRGGGEYGEAWHDGGRLFNKQNSFDDFHSAAE 535
Query: 502 YLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTM 561
YLIA+GYT SS+LAIQG SNGGLL AC+NQRP+L+ A I VG
Sbjct: 536 YLIANGYTSSSKLAIQGASNGGLLIGACVNQRPELYAAGIAHVG---------------- 579
Query: 562 KDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSS 621
V+DML+F+KFT+GY W SDYGSP +
Sbjct: 580 ---------------------------------VMDMLRFHKFTVGYCWVSDYGSPEEKA 606
Query: 622 QFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPH 681
FE LL +SPLHN++ P+ QYPA LL+TADHDDRV P+HSLK+ A + RD P
Sbjct: 607 AFENLLKFSPLHNLKVPET---GQYPAMLLLTADHDDRVVPLHSLKYMAQMHHTFRDCPK 663
Query: 682 QTNPLLIRIETKAGHGGGKPTTK 704
QTNPL+IRIETKAGHG KPT+K
Sbjct: 664 QTNPLMIRIETKAGHGANKPTSK 686
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307177097|gb|EFN66352.1| Prolyl endopeptidase [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/761 (45%), Positives = 454/761 (59%), Gaps = 136/761 (17%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
MT+ +YP+AR++ES+VD YHGV+I DPY W+EDPDS ETK FVD +NAI++PYL R
Sbjct: 1 MTRIQYPEARRDESVVDNYHGVEIADPYRWLEDPDSTETKAFVDAQNAITKPYLAACKVR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS 152
D + LT++WD+PKYS P + G Y+F+ NTGLQN SV+Y+QD+L+ E +VFLDPN LS
Sbjct: 61 DSIHERLTQLWDFPKYSCPAKHGGKYYFYKNTGLQNQSVLYVQDTLESEPKVFLDPNTLS 120
Query: 153 DDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
+DGTV++ S SFSEDG AY LS SGSDW+++HF + TG++YPE+L ++KF I WTH
Sbjct: 121 EDGTVAITSSSFSEDGSIFAYGLSESGSDWSTIHFLNAQTGEKYPEILEKVKFSPITWTH 180
Query: 213 DHKGVFYS---NQEPKSK-SKKHSKKNRSSAYHL--TVNVAPITSQYITNEGPQFVFKTN 266
D++G+FY +Q+ K+ S+ +N+ YH+ T + + E +
Sbjct: 181 DNRGIFYGQYRDQQGKTDGSETLGNQNQKLCYHIVGTSQSDDVVAIEFPEEPLWRIGAEV 240
Query: 267 KDAPNYRLIT-----------------------------------IDFDNFAESNWKTLI 291
D N+ ++T D++ K +
Sbjct: 241 SDCGNWLIVTPLKDCRDNLVYFTPLKAGMDISNNLPLTQVVDKLEADYEYITNVGTKAVF 300
Query: 292 EENKD---------DVLDWATCVANDKLILSYIHHVKNVMHLHD---------------- 326
NK+ D+LD+ DK + H +NV+ D
Sbjct: 301 RTNKNAPNYKLIAIDLLDY----GQDKWVDLLPEHPENVLDWADAVDGDKFVACYIQDVK 356
Query: 327 -------LASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDP 379
L +GK + TFPLD+GT+VGFSG+KKYSEIFY F SFL P II+ ++ +P
Sbjct: 357 NILQLHCLKTGKIIRTFPLDLGTVVGFSGEKKYSEIFYQFTSFLTPGIIYTIDLKKEEEP 416
Query: 380 NSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGY 439
I REIKV FD SL++T Q+FYPSKDGTKIPMFI+++ A LDG P +LYGY
Sbjct: 417 R------ILREIKVKGFDASLYKTSQIFYPSKDGTKIPMFIVTKSDAVLDGTMPALLYGY 470
Query: 440 GGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA 499
GGF S+QP FSVT++VF++ NGI A+ N+RGGGEYGERWH+ GR N+QNVFDDFQ A
Sbjct: 471 GGFNASIQPTFSVTRLVFIQHLNGILAVANVRGGGEYGERWHNAGRFFNRQNVFDDFQYA 530
Query: 500 AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559
A+YL+ +GYT S++L IQGGSNGGL A CINQRPDLFGAAI QVG
Sbjct: 531 AKYLVENGYTTSTKLTIQGGSNGGLAVAVCINQRPDLFGAAIAQVG-------------- 576
Query: 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN 619
V+DML+F+KFTIG W SDYGS +
Sbjct: 577 -----------------------------------VMDMLRFHKFTIGSAWVSDYGSSDD 601
Query: 620 SSQFEYLLGYSPLHNIQ-GPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRD 678
+ F+ LL YSPLHN++ PD++ QYPATLL+TADHDDRV P+H+LK ATLQ R+
Sbjct: 602 AKHFQNLLKYSPLHNVRIPPDDV---QYPATLLLTADHDDRVVPLHTLKLIATLQYTFRN 658
Query: 679 YPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719
Q NP+L RI+TKAGHGGGKPT K + ++ F + S
Sbjct: 659 VSKQENPILARIDTKAGHGGGKPTMKVLEESTDILSFIVQS 699
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405972967|gb|EKC37709.1| Prolyl endopeptidase [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/752 (45%), Positives = 462/752 (61%), Gaps = 127/752 (16%)
Query: 40 KARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAEL 99
+AR+++ VD+YHG KI D Y WMEDPDSEETK FV+ +N ISRP+L+ P RDK+ L
Sbjct: 6 EARRDDGQVDDYHGTKISDAYHWMEDPDSEETKAFVEAQNNISRPFLDSCPVRDKLNKRL 65
Query: 100 TKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSL 159
T++WD+PKY P ++GDHY++ +N+GLQN SV+Y+QDSL+ EARVFLDPN LSDDGTVSL
Sbjct: 66 TELWDFPKYGCPYKRGDHYYYSYNSGLQNQSVLYVQDSLESEARVFLDPNLLSDDGTVSL 125
Query: 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFY 219
+FSE+GK LAY +S SGSDW ++ FK+ +GK+ P+ L ++KF S+AWTHDHKG+FY
Sbjct: 126 NGKAFSENGKYLAYGISKSGSDWITIKFKEAPSGKDLPDTLEKVKFSSMAWTHDHKGLFY 185
Query: 220 S---NQEPKSK-SKKHSKKNRSSAYH---------LTVNVAPITSQYI----TNEGPQFV 262
+ ++ K++ ++ S +N+ YH + V P +++ ++ ++V
Sbjct: 186 NKYLDENIKAEGTETASNQNQKLFYHRIGTDQSKDVLVAEFPDNPKWMIGAEVSDCGRYV 245
Query: 263 FKTNKDA--PNYRLITIDF-----------------DNFAES------------------ 285
T + P RL +D DNF
Sbjct: 246 VLTPTEGCDPTNRLFYVDLQTLPDGINGILPCVKVVDNFDAQYEYLTNEGTLFTFKTNLK 305
Query: 286 --NWKTL-IEENKDDVLDWAT-------------CVANDKLILSYIHHVKNVMHLHDLAS 329
N+K + I+ +K ++ W T CV N+KL++ Y+ VKN +++H+L+
Sbjct: 306 APNYKLIQIDFSKPEMETWTTLVEETSSVLEWTACVNNNKLVMCYLEDVKNKLYVHNLSD 365
Query: 330 GKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFR 389
GK + FPL++GTI G+SGKK+ +EIF+ F+SFL P +I+ C++ ++FR
Sbjct: 366 GKRMAEFPLEIGTIAGYSGKKEQTEIFFQFISFLTPGVIYRCDM-----TKDTYTPTVFR 420
Query: 390 EIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG 449
E K+ +FD +ETKQ+FYPSKDGTKIPMFI+ +K LDG+NPC+LYGYGGF +S+ P
Sbjct: 421 ETKLKNFDFDQYETKQIFYPSKDGTKIPMFIVKKKDMPLDGDNPCLLYGYGGFNISISPH 480
Query: 450 FSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509
FSV+++VF++ G++A+ NIRGGGEYG+ WH GGR NKQNVFDDFQ AA+YLI + YT
Sbjct: 481 FSVSRMVFMQHLGGVFAVANIRGGGEYGDDWHKGGRFGNKQNVFDDFQAAAQYLIDNKYT 540
Query: 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMF 569
+ +L I GGSNGGLL AC+NQRPDLFG I QVG
Sbjct: 541 SAKKLVINGGSNGGLLVGACMNQRPDLFGCGIAQVG------------------------ 576
Query: 570 HFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGY 629
V+DMLKF+KFTIG+ W +DYG QF YL+ Y
Sbjct: 577 -------------------------VMDMLKFHKFTIGHAWTTDYGCSDKEDQFPYLIKY 611
Query: 630 SPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIR 689
SPLHNI+ PD QYPA LL+T DHDDRV P HSLKF A LQ L+D QTNP++IR
Sbjct: 612 SPLHNIKVPD--GDTQYPAVLLLTGDHDDRVVPSHSLKFMAELQHTLKDCQKQTNPIMIR 669
Query: 690 IETKAGHGGGKPTTKQF-PLTIPVIYFYLTSG 720
++TKAGHG GKPT K LT + LT+G
Sbjct: 670 VDTKAGHGSGKPTAKIIEELTDIYSFIILTAG 701
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|194766113|ref|XP_001965169.1| GF23775 [Drosophila ananassae] gi|190617779|gb|EDV33303.1| GF23775 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 332/750 (44%), Positives = 437/750 (58%), Gaps = 127/750 (16%)
Query: 38 YPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKA 97
YP AR++ S+ ++ H +I D Y W+E+PDS ET++F++ +NAIS+P+LE+ + +
Sbjct: 28 YPAARRDVSMEEKIHDYRIRDVYRWLENPDSAETQQFINAQNAISKPFLENTQEWQAIHD 87
Query: 98 ELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTV 157
++TK+WDYPKY P R G Y++F NTGLQN SV+ Q+SLDG FLDPN+L+ DGT
Sbjct: 88 KMTKLWDYPKYGCPSRHGKFYYYFKNTGLQNQSVLMQQESLDGPEVEFLDPNSLAADGTT 147
Query: 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGV 217
+L SFSE+G +AY LS GSDW + + A G ++PE+L ++KF +I+WT D++G
Sbjct: 148 ALTQKSFSENGAYMAYGLSEQGSDWIKIRIRKAADGTDFPEILEKVKFSNISWTKDNRGF 207
Query: 218 FYS---NQE----------------------------------PKSKSKKHSKKNRSSAY 240
FY NQE P++ S + + +
Sbjct: 208 FYGRYPNQEGKTDGSETKQNEFQKLYYHRVGKSQGNDTLVAEFPENPSWRIASEVSDCGK 267
Query: 241 HLTVNVAPITS--------------------------------QYITNEGPQFVFKTNKD 268
+L ++V+P T +YITNEG + F TNK
Sbjct: 268 YLILSVSPTTRDNMVFYANLEPGKDITEKLEVKPIVDKLDADYEYITNEGSKMYFHTNKG 327
Query: 269 APNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLA 328
APNYR++ IDF + AE NW T+I E++ DVL+WA CV +KL+L Y VKN++ ++L
Sbjct: 328 APNYRVVIIDFASPAEDNWTTVIPEHEKDVLEWALCVHQNKLVLCYNRDVKNILQSYELH 387
Query: 329 SGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIF 388
+GK F LD+GTI G SGK+KYSEIFYSF SFL P II+H + V ++ I
Sbjct: 388 TGKMTGQFGLDIGTINGISGKRKYSEIFYSFTSFLTPGIIYHYDFAKPV-----MKPKIL 442
Query: 389 RE--IKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQ-LDGNNPCILYGYGGFAVS 445
RE + + F+ + QVFY SKD T IPMFI+ RK ++ PC++YGYGGF S
Sbjct: 443 RETHLNLEGFNRDDYSVDQVFYESKDETPIPMFIIQRKRSEDTVSPRPCLMYGYGGFNYS 502
Query: 446 LQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIA 505
L P S T I+F+ F+G+ A PNIRGGGEYG WH+GGRLLNKQN FDDFQ AAEYL
Sbjct: 503 LMPVLSNTGIMFMDTFDGVLAYPNIRGGGEYGIEWHNGGRLLNKQNCFDDFQAAAEYLTK 562
Query: 506 SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCK 565
YT RLAIQG SNGGLL ACINQRPDLFGAAI QVG
Sbjct: 563 QKYTTKERLAIQGASNGGLLVGACINQRPDLFGAAIAQVG-------------------- 602
Query: 566 NNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEY 625
V+DML+FNKFTIG+ W++DYG+P F Y
Sbjct: 603 -----------------------------VMDMLRFNKFTIGHAWQTDYGNPGERQAFAY 633
Query: 626 LLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNP 685
L YSPLHN+Q P ++YP+TL++T DHDDRVSP+HSLKFAA LQE R +Q NP
Sbjct: 634 LYKYSPLHNVQIPLN-PTQEYPSTLILTGDHDDRVSPLHSLKFAAALQEAARHSEYQVNP 692
Query: 686 LLIRIETKAGHGGGKPTTKQFPLTIPVIYF 715
+L+R+ TKAGHG GKPT + +I F
Sbjct: 693 ILLRVYTKAGHGAGKPTKMRIKEATDIITF 722
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291227779|ref|XP_002733861.1| PREDICTED: prolyl endopeptidase-like [Saccoglossus kowalevskii] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-175, Method: Compositional matrix adjust.
Identities = 341/740 (46%), Positives = 446/740 (60%), Gaps = 127/740 (17%)
Query: 36 FEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKV 95
+ YPKAR++ES +++YHG KI +PY W+EDPDSEETK FV+ +NA++ PYLE R K
Sbjct: 3 YNYPKARRDESKIEDYHGTKIAEPYEWLEDPDSEETKAFVEAQNAVTMPYLEKCKIRQKF 62
Query: 96 KAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG 155
L MWD+PKY P ++G YF+F+NTGLQN SV+Y+QDS++ EA+VFLDPN SDDG
Sbjct: 63 HDRLKAMWDFPKYGCPFKRGPRYFYFYNTGLQNQSVLYVQDSIEAEAKVFLDPNKFSDDG 122
Query: 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215
TV+L YSF+EDG+ LAY LS SGSDW ++ F VA +E P++L R+KF ++WTHD K
Sbjct: 123 TVALRGYSFTEDGEYLAYGLSDSGSDWVTVKFMKVAGSEELPDILKRVKFSCMSWTHDGK 182
Query: 216 GVFYS---NQEPKSKSKKHSKK-NRSSAYHLT-------VNVAP-------ITSQYITNE 257
G+FY+ QE K+ + + ++ YH+ V A ++ +T++
Sbjct: 183 GLFYNRYLEQEGKTDGTETTANLDQKLCYHILGTEQSSDVLCAEFPDEPKWMSGAELTDD 242
Query: 258 GPQFVFKTNKDA-PNYRLITIDF-----------------DNF-AE----SNWKTL---- 290
G + ++ P RL D DNF AE +N TL
Sbjct: 243 GRYILLSISEGCDPVNRLYYCDMKTLTDGIKGLIPWVKLVDNFDAEYEYIANEGTLFTFK 302
Query: 291 ------------IEENKDDVLDWATCVAN-DKLILSYIHHVKN-------------VMHL 324
I+ +K ++ +W ++ D +L + V N ++L
Sbjct: 303 TNLNSPRYKLINIDISKPEMENWKDLISQADTDVLEWASCVNNDKLMLCYLHDVKSQLYL 362
Query: 325 HDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLE 384
H+L +G L TFPLDVGTI G+SGKKK EIFY F SFL P II+ C++ A KLE
Sbjct: 363 HELNTGNRLTTFPLDVGTITGYSGKKKDHEIFYQFTSFLTPGIIYRCDLSA-----DKLE 417
Query: 385 TSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAV 444
S+FR+I V FD S F+T QVF+ SKDGTKIPMFI+ RKG +LDG++P +LYGYGGF +
Sbjct: 418 PSVFRQIDVKGFDQSQFQTVQVFFSSKDGTKIPMFIVHRKGIELDGSHPVLLYGYGGFNI 477
Query: 445 SLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLI 504
S+ PGFSV++IVF++ GI AIPNIRGGGEYGE WH GG L NKQN FDDFQ AA++LI
Sbjct: 478 SITPGFSVSRIVFIQHLGGILAIPNIRGGGEYGETWHKGGMLANKQNCFDDFQFAAQWLI 537
Query: 505 ASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDC 564
+ YT ++++ + GGSNGGLL AAC NQRPDLFG I QVG
Sbjct: 538 ENKYTSANKITLNGGSNGGLLVAACANQRPDLFGCIINQVG------------------- 578
Query: 565 KNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFE 624
V+DMLKF+KFTIG+ W +D+G FE
Sbjct: 579 ------------------------------VMDMLKFHKFTIGHAWITDFGCSEKKDNFE 608
Query: 625 YLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTN 684
YL+ YSPLHNI+ PD QYP+ LL+TADHDDRV P+HSLK+ A LQ + QTN
Sbjct: 609 YLIKYSPLHNIKSPD--GDTQYPSMLLLTADHDDRVVPLHSLKYIAELQHTMGSESKQTN 666
Query: 685 PLLIRIETKAGHGGGKPTTK 704
PL+IR++TKAGHG GKPT K
Sbjct: 667 PLMIRLDTKAGHGAGKPTAK 686
|
Source: Saccoglossus kowalevskii Species: Saccoglossus kowalevskii Genus: Saccoglossus Family: Harrimaniidae Order: Class: Enteropneusta Phylum: Hemichordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1012 | ||||||
| UNIPROTKB|F1NUS2 | 710 | PREP "Uncharacterized protein" | 0.299 | 0.426 | 0.587 | 4e-196 | |
| RGD|620841 | 710 | Prep "prolyl endopeptidase" [R | 0.310 | 0.442 | 0.568 | 1.3e-195 | |
| UNIPROTKB|O70196 | 710 | Prep "Prolyl endopeptidase" [R | 0.310 | 0.442 | 0.568 | 1.3e-195 | |
| MGI|MGI:1270863 | 710 | Prep "prolyl endopeptidase" [M | 0.310 | 0.442 | 0.559 | 1.3e-195 | |
| UNIPROTKB|P48147 | 710 | PREP "Prolyl endopeptidase" [H | 0.310 | 0.442 | 0.565 | 1.1e-193 | |
| UNIPROTKB|F6QHN4 | 702 | PREP "Prolyl endopeptidase" [B | 0.310 | 0.447 | 0.562 | 5.8e-193 | |
| UNIPROTKB|P23687 | 710 | PREP "Prolyl endopeptidase" [S | 0.310 | 0.442 | 0.555 | 7.4e-193 | |
| UNIPROTKB|Q9XTA2 | 710 | PREP "Prolyl endopeptidase" [B | 0.310 | 0.442 | 0.559 | 1.2e-192 | |
| UNIPROTKB|F1PHX2 | 710 | PREP "Uncharacterized protein" | 0.310 | 0.442 | 0.559 | 5.2e-192 | |
| UNIPROTKB|F1PHW5 | 699 | PREP "Uncharacterized protein" | 0.310 | 0.449 | 0.559 | 1.6e-190 |
| UNIPROTKB|F1NUS2 PREP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 997 (356.0 bits), Expect = 4.0e-196, Sum P(3) = 4.0e-196
Identities = 181/308 (58%), Positives = 230/308 (74%)
Query: 252 QYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLI 311
+Y+TNEG F FKTN+ +PNYRLI IDF + ES WK LI E++ DVL+W CV ++ L+
Sbjct: 291 EYVTNEGTVFTFKTNRHSPNYRLINIDFSDPEESKWKVLIPEHERDVLEWVACVRSNFLV 350
Query: 312 LSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHC 371
L Y+H VKN++ LHDLA+G HL TFPLDVG+IVG+SG+KK +EIFY F SFL P II+HC
Sbjct: 351 LCYLHDVKNILQLHDLATGAHLKTFPLDVGSIVGYSGQKKDNEIFYQFTSFLSPGIIYHC 410
Query: 372 NIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGN 431
++ +LE +FRE+ V FDPS+++T QVFYPSKDGTKIPMFI+ +KG +LDG+
Sbjct: 411 DLT-----KEELEPRVFREVTVKGFDPSVYQTIQVFYPSKDGTKIPMFIIHKKGIKLDGS 465
Query: 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491
+P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 466 HPAFLYGYGGFNISITPSYSVSRLIFVRHLGGVLAVANIRGGGEYGETWHKGGILANKQN 525
Query: 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISD 551
FDDFQ AA+YLI GYT +L I GGSNGGLL AAC NQRPDLFG I QVG ++
Sbjct: 526 CFDDFQYAAKYLIREGYTSPKKLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLK 585
Query: 552 CGRWLIVH 559
++ I H
Sbjct: 586 FHKYTIGH 593
|
|
| RGD|620841 Prep "prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 1.3e-195, Sum P(3) = 1.3e-195
Identities = 183/322 (56%), Positives = 233/322 (72%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
YITNEG F FKTN+++PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YITNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+ +VKN++ LHDL +G L TFPLDVG++VG+SG+KK SEIFY F SFL P +I+HC+
Sbjct: 352 CYLRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T QVFYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----REELEPRVFREVTVKGIDASDYQTIQVFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT S RL I GGSNGGLL AAC NQRPDLFG I QVG ++
Sbjct: 527 FDDFQCAAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C ++ HF
Sbjct: 587 HKFTIGHAWTTDYGCSDSKQHF 608
|
|
| UNIPROTKB|O70196 Prep "Prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 1.3e-195, Sum P(3) = 1.3e-195
Identities = 183/322 (56%), Positives = 233/322 (72%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
YITNEG F FKTN+++PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YITNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+ +VKN++ LHDL +G L TFPLDVG++VG+SG+KK SEIFY F SFL P +I+HC+
Sbjct: 352 CYLRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T QVFYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----REELEPRVFREVTVKGIDASDYQTIQVFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT S RL I GGSNGGLL AAC NQRPDLFG I QVG ++
Sbjct: 527 FDDFQCAAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C ++ HF
Sbjct: 587 HKFTIGHAWTTDYGCSDSKQHF 608
|
|
| MGI|MGI:1270863 Prep "prolyl endopeptidase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 1.3e-195, Sum P(3) = 1.3e-195
Identities = 180/322 (55%), Positives = 231/322 (71%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+++PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN++ LHDL +G L TFPLDVG++VG+SG+KK SEIFY F SFL P +I+HC+
Sbjct: 352 CYLHDVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D + ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPMVFREVTVKGIDAADYQTIQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL AAC NQRPDLFG I QVG ++
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C + HF
Sbjct: 587 HKFTIGHAWTTDYGCSDTKQHF 608
|
|
| UNIPROTKB|P48147 PREP "Prolyl endopeptidase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 1.1e-193, Sum P(3) = 1.1e-193
Identities = 182/322 (56%), Positives = 231/322 (71%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYR+I IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN++ LHDL +G L TFPLDVG+IVG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R GI A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL AAC NQRPDLFG I QVG ++
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C ++ HF
Sbjct: 587 HKYTIGHAWTTDYGCSDSKQHF 608
|
|
| UNIPROTKB|F6QHN4 PREP "Prolyl endopeptidase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 5.8e-193, Sum P(3) = 5.8e-193
Identities = 181/322 (56%), Positives = 230/322 (71%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 284 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVL 343
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L TFPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 344 CYLHDVKNTLQLHDLATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 403
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 404 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 458
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 459 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 518
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG ++
Sbjct: 519 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 578
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C +N HF
Sbjct: 579 HKYTIGHAWTTDYGCSDNKQHF 600
|
|
| UNIPROTKB|P23687 PREP "Prolyl endopeptidase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 7.4e-193, Sum P(3) = 7.4e-193
Identities = 179/322 (55%), Positives = 229/322 (71%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG ++
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C ++ HF
Sbjct: 587 HKYTIGHAWTTDYGCSDSKQHF 608
|
|
| UNIPROTKB|Q9XTA2 PREP "Prolyl endopeptidase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 977 (349.0 bits), Expect = 1.2e-192, Sum P(3) = 1.2e-192
Identities = 180/322 (55%), Positives = 229/322 (71%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H VKN + LHD+A+G L TFPL+VG++VG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVKNTLQLHDMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV +++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQCAAEYLI GYT RL I GGSNGGLL A C NQRPDLFG I QVG ++
Sbjct: 527 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C +N HF
Sbjct: 587 HKYTIGHAWTTDYGCSDNKQHF 608
|
|
| UNIPROTKB|F1PHX2 PREP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 5.2e-192, Sum P(3) = 5.2e-192
Identities = 180/322 (55%), Positives = 231/322 (71%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H V+N++ LHDLA+G L TFPL+VG+IVG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 352 CYLHDVRNILQLHDLATGALLKTFPLEVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 412 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 466
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 467 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 526
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQ AAEYLI GYT RL I GGSNGGLL AAC NQRPDLFG I QVG ++
Sbjct: 527 FDDFQHAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKF 586
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C ++ HF
Sbjct: 587 HKYTIGHAWTTDYGCSDSKQHF 608
|
|
| UNIPROTKB|F1PHW5 PREP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.6e-190, Sum P(3) = 1.6e-190
Identities = 180/322 (55%), Positives = 231/322 (71%)
Query: 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312
Y+TNEG F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L
Sbjct: 281 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 340
Query: 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
Y+H V+N++ LHDLA+G L TFPL+VG+IVG+SG+KK +EIFY F SFL P II+HC+
Sbjct: 341 CYLHDVRNILQLHDLATGALLKTFPLEVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 400
Query: 373 IPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432
+ +LE +FRE+ V D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++
Sbjct: 401 LT-----KEELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSH 455
Query: 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492
P LYGYGGF +S+ P +SV++++F+R G+ A+ NIRGGGEYGE WH GG L NKQN
Sbjct: 456 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 515
Query: 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552
FDDFQ AAEYLI GYT RL I GGSNGGLL AAC NQRPDLFG I QVG ++
Sbjct: 516 FDDFQHAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKF 575
Query: 553 GRWLIVH---TMKDCKNNMFHF 571
++ I H T C ++ HF
Sbjct: 576 HKYTIGHAWTTDYGCSDSKQHF 597
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9XTA2 | PPCE_BOVIN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5032 | 0.3893 | 0.5549 | yes | N/A |
| Q9QUR6 | PPCE_MOUSE | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5331 | 0.3922 | 0.5591 | yes | N/A |
| O70196 | PPCE_RAT | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5398 | 0.3922 | 0.5591 | yes | N/A |
| P48147 | PPCE_HUMAN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5265 | 0.3922 | 0.5591 | yes | N/A |
| P23687 | PPCE_PIG | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5199 | 0.3922 | 0.5591 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1012 | |||
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 1e-138 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 1e-93 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 5e-88 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 4e-56 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 9e-39 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 3e-29 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 4e-19 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 4e-19 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 1e-15 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 4e-12 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 7e-09 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 1e-05 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 1e-04 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 428 bits (1103), Expect = e-138
Identities = 216/706 (30%), Positives = 313/706 (44%), Gaps = 133/706 (18%)
Query: 57 PDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQGD 116
PDPY W+ED DS E K+V+ +NA +R +L + R L ++WDY P +G
Sbjct: 3 PDPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGG 62
Query: 117 HYFFFHN-----TGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG--TVSLGSYSFSEDGK 169
Y+ F GL + + S E V +D + LS D V+LG S DG
Sbjct: 63 RYYNFWQDALYPRGLYRRTTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGT 122
Query: 170 TLAYCLSSSGSDWTSMHFKDVATGK-------EYPEVLHRLK---FVSIAWTHDHK---G 216
L Y LS GSD D+ TG+ ++P + FVS W K G
Sbjct: 123 RLLYSLSIGGSDAGITREFDLETGEFVEEEGFKFPGISWLDDDGVFVSRYWRPKEKTPSG 182
Query: 217 VFYSNQ--------EPKSKSKKHSKKNRSSAYHLTVNVAP------ITSQYITNEGP--- 259
+ E + + + + + ++ ++ T+
Sbjct: 183 YPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIK 242
Query: 260 ------------QFVFKTNKDAP----NYRLITIDFDNFAE-SNWKTLIEENKDDVLDWA 302
+ V D +Y L+ + D E ++ L+
Sbjct: 243 LGLPDKVGYEWGKLVNTLRADWTFADVDYGLLYLLTDEDLELGKVIAEFIPEEEQSLEQV 302
Query: 303 TCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDV---GTIVGFSGKKKYSEIFYSF 359
DKL+ + +V + ++DL + +++ G + S K E+F +F
Sbjct: 303 VTT-KDKLVAGTLDNVSGRLEVYDLKGERIE---EVELPPPGALGMGSADKDGDEVFLAF 358
Query: 360 MSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMF 419
SF P+ ++ + +LE + RE V FD +E +Q F SKDGT+IP F
Sbjct: 359 TSFTTPSTLYRLD-----LFGGELE--VIREQPV-QFDADNYEVEQFFATSKDGTRIPYF 410
Query: 420 ILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479
I+ RKGA+ D NP +LY YGGF +SL P FS ++ ++L G++ + NIRGGGE+G
Sbjct: 411 IV-RKGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLER-GGVFVLANIRGGGEFGPE 467
Query: 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGA 539
WH G NKQNVFDDF AE LI G T +L IQGGSNGGLL A + QRP+LFGA
Sbjct: 468 WHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGA 527
Query: 540 AIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDML 599
A+ +V +LDML
Sbjct: 528 AVCEVP-------------------------------------------------LLDML 538
Query: 600 KFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDR 659
+++ T G W ++YG+P + +LL YSP HN++ G++YP TL+ T+ HDDR
Sbjct: 539 RYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKP-----GQKYPPTLITTSLHDDR 593
Query: 660 VSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ 705
V P H+ KFAA LQE P+L+R ETK GHGG PT +
Sbjct: 594 VHPAHARKFAAKLQE-------VGAPVLLREETKGGHGGAAPTAEI 632
|
Length = 648 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 303 bits (777), Expect = 1e-93
Identities = 132/400 (33%), Positives = 198/400 (49%), Gaps = 66/400 (16%)
Query: 39 PKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLE-DHPDRDKVKA 97
P R++E++VDEYHG + DPY W+ED DS E +V+ EN + +L P R+K+K
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDDSPEVLAWVEAENKYTEDFLAQLKPLREKIKE 60
Query: 98 ELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA---RVFLDPNNLSDD 154
ELT + +Y S+P R+G +Y++F NTG +N SV+Y +D+ +G VFLDPN LS+D
Sbjct: 61 ELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDAGEGPGETEEVFLDPNTLSED 120
Query: 155 G--TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL------------ 200
G TV+L Y+FS DG+ LAY LS SGSDW ++ F+DV TG+ P+VL
Sbjct: 121 GDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPLPDVLEGVKFSGIVWAP 180
Query: 201 --------------------------HRL------------------KFVSIAWTHDHKG 216
HRL ++ + D K
Sbjct: 181 DNKGFFYSRYDEPERGSTNLNQKVWRHRLGTPQSQDVLVFEEPDEPFWYLGAERSDDGKY 240
Query: 217 VFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPI---TSQYITNEGPQFVFKTNKDAPNYR 273
+F S+ ++ + V P Y+ +EG F F TN APN+R
Sbjct: 241 LFISSASGTDVNELYVLDLAQEKDGPLRKVVPRFDGVYYYVEHEGDTFYFLTNDGAPNFR 300
Query: 274 LITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGK-H 332
L+ +D ++ + ++WK +I E+++DVL V + L+LSY + + + DL G
Sbjct: 301 LVRVDLNDPSPADWKDVIVEHREDVLLEEITVFGNYLVLSYRRDALSRLQVFDLGGGGVL 360
Query: 333 LYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372
F VG++ SG+ E+ YSF SFL P I+ +
Sbjct: 361 FEEFLPGVGSVSSASGEYDDDELRYSFSSFLTPGTIYDLD 400
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 5e-88
Identities = 193/724 (26%), Positives = 309/724 (42%), Gaps = 137/724 (18%)
Query: 39 PKARKNESLVDEYHGVKIPDPYGWMEDPD--SEETKKFVDEENAISRPYLED-HPDRDKV 95
P A+K +HG D Y W+ D + + E +++ ENA + + P + K+
Sbjct: 7 PIAKK-VPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKI 65
Query: 96 KAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA--RVFLDPNNLSD 153
E+ K S + Y ++ T +Y + +G V LD N ++
Sbjct: 66 FEEI-KGRIKEDDLSVPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAE 124
Query: 154 DGT-VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH 212
SLG+ S S D LAY + G + ++ FKD+ATG+E P+ + S AW
Sbjct: 125 GHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSG-SFAWAA 183
Query: 213 DHKGVFYSNQEPK---SKSKKHS-----------------------KKNRSSAYHLTVNV 246
D K +FY+ + K +H ++RS AY + +++
Sbjct: 184 DGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAY-IVISL 242
Query: 247 AP-ITSQ-------------------------YITNEGPQFVFKTNKDAPNYRLITIDFD 280
ITS+ + + G +F +N D N++L+
Sbjct: 243 GSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFKLVRAP-V 301
Query: 281 NFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD- 339
+ +SNW+ LI +D L+ A D L+L + + D +G D
Sbjct: 302 SADKSNWRELIPHREDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTG-EERGIAFDD 359
Query: 340 --VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPD-F 396
+ + + + YS+ S P +F ++ E ++ ++ +VP F
Sbjct: 360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATG-------ERTLLKQQEVPGGF 412
Query: 397 DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIV 456
DP + +++++ + DG ++P+ ++ RK +LDG+ P +LYGYG + +S+ P FS +
Sbjct: 413 DPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFS-IARL 471
Query: 457 FLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAI 516
L D +YAI ++RGGGE G W++ G+LLNK+N F DF AA +L+ GYT R+
Sbjct: 472 SLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVA 531
Query: 517 QGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCD-LD 575
GGS GG+L A N PDLF I QV P F D L
Sbjct: 532 IGGSAGGMLMGAVANMAPDLFAGIIAQV--P-----------------------FVDVLT 566
Query: 576 TIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESD-YGSPANSSQFEYLLGYSPLHN 634
T+ D LPLT E D +G+P + ++Y+ YSP N
Sbjct: 567 TMLDP----SLPLTV-------------------TEWDEWGNPLDPEYYDYIKSYSPYDN 603
Query: 635 IQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA 694
+ + + YPA L+ T +D RV K+ A KLR+ NPLL++ A
Sbjct: 604 V------EAQPYPAILVTTGLNDPRVQYWEPAKWVA----KLRELKTDGNPLLLKTNMDA 653
Query: 695 GHGG 698
GHGG
Sbjct: 654 GHGG 657
|
Length = 682 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 4e-56
Identities = 92/260 (35%), Positives = 114/260 (43%), Gaps = 67/260 (25%)
Query: 448 PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507
P FS + L D + A+ N RG G YG WHD G+ QN FDDF AAEYLIA G
Sbjct: 1 PSFS-WNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQG 59
Query: 508 YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNN 567
Y RLAI GGS GG LT A +NQRPDLF AA+ V
Sbjct: 60 YVDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVP---------------------- 97
Query: 568 MFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWE-SDYGSPANSSQ-FEY 625
V+D L + T + ++G+P ++ + + Y
Sbjct: 98 ---------------------------VVDWLTYMSDTSPFTERYMEWGNPWDNEEGYRY 130
Query: 626 LLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNP 685
L YSP N+ K YP LL+ HDDRV P +LK A LQ K
Sbjct: 131 LSPYSPYDNV--------KAYPPLLLIHGLHDDRVPPAEALKLVAALQAK-------GKN 175
Query: 686 LLIRIETKAGHGGGKPTTKQ 705
+L+ I GHGGGKP K+
Sbjct: 176 VLLLIFPDEGHGGGKPRNKR 195
|
Length = 212 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 9e-39
Identities = 101/358 (28%), Positives = 171/358 (47%), Gaps = 66/358 (18%)
Query: 342 TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLF 401
T + ++ + + S + Y + S P +F ++ E + ++ +VP FD + +
Sbjct: 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG-------ERRVLKQTEVPGFDAANY 414
Query: 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL-RD 460
++ ++ ++DG ++P+ ++ + G+NP ++YGYG + S+ FS +++ L R
Sbjct: 415 RSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRG 474
Query: 461 FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGS 520
F +YAI ++RGGGE G++W++ G+ L K+N F+D+ A + L+ GY S GGS
Sbjct: 475 F--VYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGS 532
Query: 521 NGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDR 580
GG+L INQRP+LF I QV P + +V TM D ++IP
Sbjct: 533 AGGMLMGVAINQRPELFHGVIAQV--PFVD------VVTTMLD-----------ESIP-- 571
Query: 581 KIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDE 640
T G F E +G+P + +EY+ YSP N+
Sbjct: 572 -----------------------LTTGEFEE--WGNPQDPQYYEYMKSYSPYDNV----- 601
Query: 641 LKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 698
+ YP L+ T HD +V K+ A KLR+ + LL+ + +GHGG
Sbjct: 602 -TAQAYPHLLVTTGLHDSQVQYWEPAKWVA----KLRELKTDDHLLLLCTDMDSGHGG 654
|
Length = 686 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-29
Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 12/111 (10%)
Query: 764 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTA 823
+LDML+++ T G W ++YG+P + +LL YSP HN++ G++YP TL+ T+
Sbjct: 534 LLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKP-----GQKYPPTLITTS 588
Query: 824 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ 874
HDDRV P H+ KFAA LQE P+L+R ETK GHGG PT +
Sbjct: 589 LHDDRVHPAHARKFAAKLQE-------VGAPVLLREETKGGHGGAAPTAEI 632
|
Length = 648 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-19
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 898 TFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIP 957
F SF P+ ++ + +LE + RE V FD +E +Q F SKDGT+IP
Sbjct: 357 AFTSFTTPSTLYRLD-----LFGGELE--VIREQPV-QFDADNYEVEQFFATSKDGTRIP 408
Query: 958 MFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL 998
FI+ RKGA+ D NP +LY YGGF +SL P FS ++ ++L
Sbjct: 409 YFIV-RKGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWL 447
|
Length = 648 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 17/121 (14%)
Query: 756 KDDILIAEVLDMLKFNKFTIGYFWE-SDYGSPANSSQ-FEYLLGYSPLHNIQGPNELKGK 813
K + + V+D L + T + ++G+P ++ + + YL YSP N+ K
Sbjct: 90 KAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGYRYLSPYSPYDNV--------K 141
Query: 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873
YP LL+ HDDRV P +LK A LQ K +L+ I GHGGGKP K
Sbjct: 142 AYPPLLLIHGLHDDRVPPAEALKLVAALQAK-------GKNVLLLIFPDEGHGGGKPRNK 194
Query: 874 Q 874
+
Sbjct: 195 R 195
|
Length = 212 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 92/511 (18%), Positives = 145/511 (28%), Gaps = 108/511 (21%)
Query: 193 GKEYPEVLHRLKFVSIAWTHDHKGVFYSN--QEPKSKSKKHSKKNRSS--AYHLTVNVAP 248
K L L VS A D + V + + LT
Sbjct: 158 SKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGS 217
Query: 249 ITSQYITNEGPQFVFKTNKDAPN---------YRLITIDFDNFAESNWKT----LIEENK 295
I+ +G + + D S T +E
Sbjct: 218 ISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGL 277
Query: 296 DDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEI 355
D D +A D S + V ++ + SG D G + GF + +
Sbjct: 278 DG--DGLLFIATDGGGSSPLFRVDDLGGGVEGLSG--------DDGGVPGFDVDGRK--L 325
Query: 356 FYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTK 415
++ S +P I+ D + + + + + E V Y S DG
Sbjct: 326 ALAYSSPTEPPEIY------LYDRGEEAKLTSSNNSGLKKVKLAEPEP--VTYKSNDGET 377
Query: 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFL-RDFNGIYAIPNIRGGG 474
I ++ G P I+Y +GG + + F+ V + + PN RG
Sbjct: 378 IHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLA--PNYRGST 435
Query: 475 EYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534
YG + D R +D A + L+ R+ I GGS GG +T + P
Sbjct: 436 GYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP 495
Query: 535 DLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHK 594
A V G
Sbjct: 496 RFKAAVAVAGG------------------------------------------------- 506
Query: 595 VLDMLKFNKFTIGYF---WESDYGSPANSSQFEYLLGYSPL---HNIQGPDELKGKQYPA 648
V +L F + T G E+ G P + E SP+ NI+ P
Sbjct: 507 VDWLLYFGESTEGLRFDPEENGGGPPED---REKYEDRSPIFYADNIKTP---------- 553
Query: 649 TLLMTADHDDRVSPVHSLKFAATLQEKLRDY 679
LL+ + DDRV + + L+ K +
Sbjct: 554 LLLIHGEEDDRVPIEQAEQLVDALKRKGKPV 584
|
Length = 620 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 933 VPD-FDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS 991
VP FDP + +++++ + DG ++P+ ++ RK +LDG+ P +LYGYG + +S+ P FS
Sbjct: 408 VPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFS 467
|
Length = 682 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-09
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 779 WESD-YGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKF 837
E D +G+P + ++Y+ YSP N+ + + YPA L+ T +D RV K+
Sbjct: 578 TEWDEWGNPLDPEYYDYIKSYSPYDNV------EAQPYPAILVTTGLNDPRVQYWEPAKW 631
Query: 838 AATLQEKLRDYPHQTNPLLIRIETKAGHGG 867
A KLR+ NPLL++ AGHGG
Sbjct: 632 VA----KLRELKTDGNPLLLKTNMDAGHGG 657
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 19/75 (25%), Positives = 45/75 (60%)
Query: 924 ETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFA 983
E + ++ +VP FD + + ++ ++ ++DG ++P+ ++ + G+NP ++YGYG +
Sbjct: 397 ERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYG 456
Query: 984 VSLQPGFSVTKIVFL 998
S+ FS +++ L
Sbjct: 457 ASIDADFSFSRLSLL 471
|
Length = 686 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 773 FTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPV 832
T G F E +G+P + +EY+ YSP N+ + YP L+ T HD +V
Sbjct: 572 LTTGEFEE--WGNPQDPQYYEYMKSYSPYDNV------TAQAYPHLLVTTGLHDSQVQYW 623
Query: 833 HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867
K+ A KLR+ + LL+ + +GHGG
Sbjct: 624 EPAKWVA----KLRELKTDDHLLLLCTDMDSGHGG 654
|
Length = 686 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1012 | |||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2237|consensus | 712 | 100.0 | ||
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 100.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.97 | |
| PRK10115 | 686 | protease 2; Provisional | 99.96 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 99.95 | |
| KOG2100|consensus | 755 | 99.93 | ||
| KOG2281|consensus | 867 | 99.93 | ||
| KOG2237|consensus | 712 | 99.93 | ||
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.92 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.87 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.74 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.71 | |
| KOG2100|consensus | 755 | 99.69 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.67 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.67 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.66 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.62 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK10566 | 249 | esterase; Provisional | 99.6 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.59 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.59 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.58 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.57 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.55 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.52 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.51 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.5 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.5 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.49 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.48 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.47 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.47 | |
| KOG1455|consensus | 313 | 99.45 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.44 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.43 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.43 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.43 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.4 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.39 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.37 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.36 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.35 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.33 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.27 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.25 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.24 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.22 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.21 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.18 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.16 | |
| KOG1552|consensus | 258 | 99.15 | ||
| KOG1515|consensus | 336 | 99.14 | ||
| KOG2281|consensus | 867 | 99.14 | ||
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.13 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.11 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.11 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.1 | |
| KOG4391|consensus | 300 | 99.1 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.04 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.04 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.03 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.0 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.96 | |
| PLN02511 | 388 | hydrolase | 98.95 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 98.92 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 98.91 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 98.89 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 98.84 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 98.83 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 98.83 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 98.81 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 98.8 | |
| PLN02872 | 395 | triacylglycerol lipase | 98.77 | |
| PLN00021 | 313 | chlorophyllase | 98.77 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 98.76 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 98.72 | |
| PRK10566 | 249 | esterase; Provisional | 98.72 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 98.71 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 98.69 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 98.67 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 98.67 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 98.63 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 98.63 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 98.62 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 98.62 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 98.61 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 98.6 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 98.58 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 98.58 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 98.58 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 98.56 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.55 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 98.55 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 98.55 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 98.5 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 98.49 | |
| KOG1838|consensus | 409 | 98.48 | ||
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 98.47 | |
| KOG4667|consensus | 269 | 98.47 | ||
| PLN02965 | 255 | Probable pheophorbidase | 98.47 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 98.47 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 98.46 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 98.45 | |
| KOG4627|consensus | 270 | 98.45 | ||
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.45 | |
| KOG3043|consensus | 242 | 98.44 | ||
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 98.44 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 98.42 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.41 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 98.41 | |
| PRK07581 | 339 | hypothetical protein; Validated | 98.4 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 98.39 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.39 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.38 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 98.33 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 98.3 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 98.3 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 98.29 | |
| PLN02578 | 354 | hydrolase | 98.28 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.27 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 98.26 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 98.24 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.22 | |
| KOG4178|consensus | 322 | 98.22 | ||
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 98.2 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 98.15 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.14 | |
| KOG2984|consensus | 277 | 98.11 | ||
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 98.11 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 98.08 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 98.08 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 97.98 | |
| KOG3101|consensus | 283 | 97.97 | ||
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 97.94 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 97.91 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 97.9 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 97.9 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.9 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 97.89 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 97.89 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 97.88 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 97.84 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 97.81 | |
| KOG0293|consensus | 519 | 97.79 | ||
| KOG4409|consensus | 365 | 97.78 | ||
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 97.74 | |
| KOG0279|consensus | 315 | 97.73 | ||
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 97.73 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 97.71 | |
| KOG0271|consensus | 480 | 97.71 | ||
| KOG1454|consensus | 326 | 97.69 | ||
| KOG2112|consensus | 206 | 97.67 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.67 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 97.67 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 97.65 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 97.64 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.63 | |
| KOG0293|consensus | 519 | 97.62 | ||
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 97.57 | |
| KOG1552|consensus | 258 | 97.55 | ||
| KOG2564|consensus | 343 | 97.54 | ||
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 97.54 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 97.53 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.53 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 97.49 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 97.44 | |
| KOG3847|consensus | 399 | 97.43 | ||
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 97.42 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 97.41 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 97.41 | |
| KOG0291|consensus | 893 | 97.36 | ||
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 97.35 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 97.28 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.28 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 97.27 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.24 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 97.23 | |
| KOG2314|consensus | 698 | 97.23 | ||
| KOG0318|consensus | 603 | 97.21 | ||
| KOG4497|consensus | 447 | 97.2 | ||
| KOG1553|consensus | 517 | 97.17 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.13 | |
| PTZ00420 | 568 | coronin; Provisional | 97.1 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 97.1 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 97.1 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 97.09 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.08 | |
| KOG2139|consensus | 445 | 97.07 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.06 | |
| KOG0266|consensus | 456 | 97.04 | ||
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 97.02 | |
| KOG0291|consensus | 893 | 97.01 | ||
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 97.0 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 96.98 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 96.96 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.95 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 96.93 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 96.92 | |
| PTZ00420 | 568 | coronin; Provisional | 96.87 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 96.87 | |
| KOG2314|consensus | 698 | 96.84 | ||
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 96.84 | |
| PTZ00421 | 493 | coronin; Provisional | 96.81 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 96.75 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.75 | |
| KOG2624|consensus | 403 | 96.75 | ||
| KOG1516|consensus | 545 | 96.74 | ||
| KOG0318|consensus | 603 | 96.71 | ||
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 96.69 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.67 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 96.67 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 96.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 96.63 | |
| PTZ00421 | 493 | coronin; Provisional | 96.6 | |
| KOG1407|consensus | 313 | 96.58 | ||
| PHA02857 | 276 | monoglyceride lipase; Provisional | 96.56 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.52 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 96.45 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 96.38 | |
| KOG2048|consensus | 691 | 96.37 | ||
| KOG2055|consensus | 514 | 96.35 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.32 | |
| KOG0266|consensus | 456 | 96.32 | ||
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 96.28 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 96.27 | |
| KOG0305|consensus | 484 | 96.22 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 96.22 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.18 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 96.17 | |
| KOG4389|consensus | 601 | 96.05 | ||
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 96.04 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.02 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 95.97 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 95.97 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 95.97 | |
| KOG0772|consensus | 641 | 95.96 | ||
| KOG0973|consensus | 942 | 95.96 | ||
| KOG2055|consensus | 514 | 95.93 | ||
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 95.92 | |
| KOG1273|consensus | 405 | 95.91 | ||
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 95.89 | |
| KOG0275|consensus | 508 | 95.88 | ||
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 95.85 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 95.76 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 95.75 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 95.72 | |
| KOG1407|consensus | 313 | 95.71 | ||
| KOG4497|consensus | 447 | 95.69 | ||
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 95.66 | |
| KOG0315|consensus | 311 | 95.6 | ||
| KOG0272|consensus | 459 | 95.56 | ||
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 95.54 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 95.48 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 95.31 | |
| KOG1446|consensus | 311 | 95.29 | ||
| KOG0973|consensus | 942 | 95.26 | ||
| KOG1445|consensus | 1012 | 95.13 | ||
| KOG1838|consensus | 409 | 95.1 | ||
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 95.09 | |
| KOG3253|consensus | 784 | 95.07 | ||
| KOG0645|consensus | 312 | 95.0 | ||
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 94.94 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 94.82 | |
| KOG0272|consensus | 459 | 94.71 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 94.62 | |
| KOG2096|consensus | 420 | 94.61 | ||
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 94.59 | |
| KOG0271|consensus | 480 | 94.54 | ||
| KOG0273|consensus | 524 | 94.41 | ||
| PRK10749 | 330 | lysophospholipase L2; Provisional | 94.17 | |
| PLN02578 | 354 | hydrolase | 94.15 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 94.1 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 94.09 | |
| KOG0284|consensus | 464 | 94.09 | ||
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 94.08 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 94.05 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 94.01 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 94.0 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 93.99 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 93.94 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 93.93 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 93.88 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 93.85 | |
| KOG2096|consensus | 420 | 93.79 | ||
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 93.78 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 93.73 | |
| PLN00021 | 313 | chlorophyllase | 93.62 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 93.56 | |
| KOG2394|consensus | 636 | 93.55 | ||
| KOG1274|consensus | 933 | 93.54 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.38 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 93.28 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 93.28 | |
| KOG0263|consensus | 707 | 93.25 | ||
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 93.01 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 92.99 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 92.93 | |
| KOG0263|consensus | 707 | 92.92 | ||
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 92.89 | |
| KOG1455|consensus | 313 | 92.86 | ||
| KOG0772|consensus | 641 | 92.73 | ||
| KOG4391|consensus | 300 | 92.68 | ||
| KOG0296|consensus | 399 | 92.68 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.65 | |
| KOG0650|consensus | 733 | 92.6 | ||
| KOG1524|consensus | 737 | 92.57 | ||
| KOG1446|consensus | 311 | 92.47 | ||
| KOG2139|consensus | 445 | 92.37 | ||
| KOG1063|consensus | 764 | 92.36 | ||
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 92.33 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 92.24 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 92.17 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 92.14 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 91.74 | |
| KOG2382|consensus | 315 | 91.71 | ||
| KOG1274|consensus | 933 | 91.7 | ||
| KOG2183|consensus | 492 | 91.37 | ||
| KOG2315|consensus | 566 | 91.34 | ||
| KOG1538|consensus | 1081 | 91.32 | ||
| KOG0286|consensus | 343 | 91.13 | ||
| KOG3043|consensus | 242 | 90.71 | ||
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 90.68 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 90.19 | |
| KOG1539|consensus | 910 | 90.01 | ||
| KOG2110|consensus | 391 | 89.89 | ||
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 89.86 | |
| KOG0299|consensus | 479 | 89.8 | ||
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 89.7 | |
| KOG2551|consensus | 230 | 89.66 | ||
| KOG0315|consensus | 311 | 89.64 | ||
| KOG0306|consensus | 888 | 89.62 | ||
| KOG0275|consensus | 508 | 89.5 | ||
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 89.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 89.27 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 89.16 | |
| KOG0643|consensus | 327 | 89.04 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 88.87 | |
| KOG0771|consensus | 398 | 88.53 | ||
| PLN02511 | 388 | hydrolase | 88.51 | |
| KOG0286|consensus | 343 | 88.5 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 88.28 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 88.18 | |
| KOG2182|consensus | 514 | 88.09 | ||
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 87.84 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 87.69 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 87.66 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 87.59 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 87.46 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 87.36 | |
| KOG2112|consensus | 206 | 87.34 | ||
| KOG3253|consensus | 784 | 87.28 | ||
| KOG0282|consensus | 503 | 87.22 | ||
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 87.11 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 87.01 | |
| KOG0273|consensus | 524 | 86.98 | ||
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 86.84 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 86.72 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 86.68 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 86.56 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 86.44 | |
| KOG1282|consensus | 454 | 86.39 | ||
| KOG1273|consensus | 405 | 86.18 | ||
| KOG0282|consensus | 503 | 85.74 | ||
| KOG2106|consensus | 626 | 85.58 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 85.5 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 85.03 | |
| KOG3967|consensus | 297 | 84.99 | ||
| KOG2315|consensus | 566 | 84.77 | ||
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 84.66 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 84.46 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 84.43 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 84.33 | |
| KOG2919|consensus | 406 | 84.28 | ||
| KOG1515|consensus | 336 | 84.21 | ||
| PLN02965 | 255 | Probable pheophorbidase | 83.96 | |
| KOG4388|consensus | 880 | 83.82 | ||
| COG3150 | 191 | Predicted esterase [General function prediction on | 83.6 | |
| KOG0639|consensus | 705 | 83.3 | ||
| KOG4499|consensus | 310 | 82.96 | ||
| PRK07581 | 339 | hypothetical protein; Validated | 82.76 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 82.62 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 82.61 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 82.61 | |
| KOG2984|consensus | 277 | 82.28 | ||
| PRK06489 | 360 | hypothetical protein; Provisional | 82.25 | |
| PLN02209 | 437 | serine carboxypeptidase | 82.21 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 82.11 | |
| KOG0303|consensus | 472 | 82.06 | ||
| KOG2919|consensus | 406 | 82.01 | ||
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 81.89 | |
| KOG0288|consensus | 459 | 81.68 | ||
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 81.53 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 81.52 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 81.41 | |
| KOG0265|consensus | 338 | 81.26 | ||
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 81.05 | |
| KOG0296|consensus | 399 | 80.97 | ||
| PRK10985 | 324 | putative hydrolase; Provisional | 80.82 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 80.81 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 80.59 | |
| KOG2110|consensus | 391 | 80.38 | ||
| KOG1445|consensus | 1012 | 80.26 | ||
| KOG0302|consensus | 440 | 80.22 | ||
| KOG0645|consensus | 312 | 80.21 | ||
| KOG0310|consensus | 487 | 80.21 | ||
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 80.21 |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-88 Score=751.39 Aligned_cols=616 Identities=30% Similarity=0.534 Sum_probs=546.6
Q ss_pred CCCCCCccCcceeecccCccccCCCCCCCCCC--CHHHHHHHHHhhhchHhhhccC-CChHHHHHHHhhcccCCCCCCCe
Q psy1288 36 FEYPKARKNESLVDEYHGVKIPDPYGWMEDPD--SEETKKFVDEENAISRPYLEDH-PDRDKVKAELTKMWDYPKYSSPQ 112 (1012)
Q Consensus 36 ~~~P~a~~~~~~~~~~hG~~~~Dpy~WLed~~--~~~~~~~l~~qn~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~s~p~ 112 (1012)
+.||.|+|.|+. .+.||++++|+|+||+|.+ +|+|++||+|||+|++++|+++ +++++|++||+.+++.++.|+|.
T Consensus 4 p~pP~a~k~~~~-~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~ 82 (682)
T COG1770 4 PLPPIAKKVPTT-RTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPY 82 (682)
T ss_pred CCCCCcccccee-eeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCcc
Confidence 469999999965 8889999999999999998 9999999999999999999999 99999999999999999999999
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCc-eEEEcCCCCCCCC-CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGE-ARVFLDPNNLSDD-GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~-~~~L~D~n~la~~-g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
++|.+.||.+.+.+.+++.-||+...++. +++|+|.|+++.+ .++.++.+.+|||++++||+.+..|++++.|.++|+
T Consensus 83 ~~~~~~Yy~r~~~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL 162 (682)
T COG1770 83 RKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDL 162 (682)
T ss_pred ccCCeeEEEEecCCCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEec
Confidence 99999999999888777666664444554 8999999999988 688999999999999999999999999999999999
Q ss_pred CCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc------c-CCCCCceEEEEeeccc-----------------
Q psy1288 191 ATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK------K-HSKKNRSSAYHLTVNV----------------- 246 (1012)
Q Consensus 191 ~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~------~-~~~~~~~l~~~~~~~~----------------- 246 (1012)
++|+..++.+.++. .+++|.+|+++|+|++.+...+-. . ......+++|++....
T Consensus 163 ~tg~~~~d~i~~~~-~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~ 241 (682)
T COG1770 163 ATGEELPDEITNTS-GSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVIS 241 (682)
T ss_pred ccccccchhhcccc-cceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEE
Confidence 99999888877653 779999999999999876532111 0 1112345556552000
Q ss_pred ----------------------------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCce
Q psy1288 247 ----------------------------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDV 298 (1012)
Q Consensus 247 ----------------------------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~ 298 (1012)
.+++|. ..+.|+.+|+.+|.++++++|++.++ .+..++|+.++++.++..
T Consensus 242 ~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~-~eh~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~ 319 (682)
T COG1770 242 LGSHITSEVRLLDADDPEAEPKVVLPRENGVEYS-VEHGGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVR 319 (682)
T ss_pred cCCCcceeEEEEecCCCCCceEEEEEcCCCcEEe-eeecCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCce
Confidence 234454 67789999999999989999999998 666678999999999999
Q ss_pred eeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC--ceEEE-eecccccCcEEEEEecCCCCCcEEEEEeCCC
Q psy1288 299 LDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD--VGTIV-GFSGKKKYSEIFYSFMSFLQPTIIFHCNIPA 375 (1012)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~--~~~v~-~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~ 375 (1012)
++.+..++ ++|++..+.++.+++++.+..+|+.. .|.++ .++.. ..+..++.+.|+|.++|+++|.++|.+|+
T Consensus 320 l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~~~~~-~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm-- 395 (682)
T COG1770 320 LEGVDLFA-DHLVLLERQEGLPRVVVRDRKTGEER-GIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDM-- 395 (682)
T ss_pred eeeeeeec-cEEEEEecccCCceEEEEecCCCcee-eEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeec--
Confidence 99999998 99999999999999999999777653 35555 22221 33445678999999999999999999999
Q ss_pred CCCCCCCcceEEEEeccCCC-CCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhH
Q psy1288 376 RVDPNSKLETSIFREIKVPD-FDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTK 454 (1012)
Q Consensus 376 ~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~ 454 (1012)
.++ +.++|++.++++ ++++.|.++++++++.||.+||..++++++...+++.|+++++||+++.++.+.|+...
T Consensus 396 ---~t~--er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~ 470 (682)
T COG1770 396 ---ATG--ERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIAR 470 (682)
T ss_pred ---cCC--cEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccce
Confidence 577 788999988887 99999999999999999999999999999988899999999999999999999999888
Q ss_pred HHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC
Q psy1288 455 IVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534 (1012)
Q Consensus 455 ~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 534 (1012)
+++++ ||++++++++||||+.|+.|+++|+...+.++|.||++|+++|++++++++++|+++|+|+||+++++++++.|
T Consensus 471 lSLlD-RGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P 549 (682)
T COG1770 471 LSLLD-RGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAP 549 (682)
T ss_pred eeeec-CceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhCh
Confidence 88887 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEccCCCccccCcceeeeecccccccCcccccc-cCCCCcccccCCCCcchhhhhhhhhhhccccccccccccc
Q psy1288 535 DLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCD-LDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESD 613 (1012)
Q Consensus 535 ~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~d-l~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~ 613 (1012)
++|+++|+.+| |+| +++|.+ +++|||.. +| .|
T Consensus 550 ~lf~~iiA~VP-------------------------FVDvltTMlD----~slPLT~~-----------------E~-~E 582 (682)
T COG1770 550 DLFAGIIAQVP-------------------------FVDVLTTMLD----PSLPLTVT-----------------EW-DE 582 (682)
T ss_pred hhhhheeecCC-------------------------ccchhhhhcC----CCCCCCcc-----------------ch-hh
Confidence 99999999999 999 688876 79999985 34 79
Q ss_pred cCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCC
Q psy1288 614 YGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETK 693 (1012)
Q Consensus 614 ~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~ 693 (1012)
||+|.+++.++++++|||+.|+. .+.||++|++.|.+|+||.++++.+|.++|++. .+++.+++|++++.
T Consensus 583 WGNP~d~e~y~yikSYSPYdNV~------a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~----~td~~plLlkt~M~ 652 (682)
T COG1770 583 WGNPLDPEYYDYIKSYSPYDNVE------AQPYPAILVTTGLNDPRVQYWEPAKWVAKLREL----KTDGNPLLLKTNMD 652 (682)
T ss_pred hCCcCCHHHHHHHhhcCchhccc------cCCCCceEEEccccCCccccchHHHHHHHHhhc----ccCCCcEEEEeccc
Confidence 99999999999999999999999 689999999999999999999999999999998 56688999999999
Q ss_pred CCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 694 AGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 694 ~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+|||...++.+.+++.+..++|+.+.++.
T Consensus 653 aGHgG~SgRf~~lee~A~eYaF~l~~~~~ 681 (682)
T COG1770 653 AGHGGASGRFQRLEEIAFEYAFLLKLAGT 681 (682)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHhhhccC
Confidence 99999888888899999999999887643
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-77 Score=719.52 Aligned_cols=611 Identities=24% Similarity=0.430 Sum_probs=501.5
Q ss_pred CCCCccCcceeecccCccccCCCCCCCCC--CCHHHHHHHHHhhhchHhhhccC-CChHHHHHHHhhcccCCCCCCCeee
Q psy1288 38 YPKARKNESLVDEYHGVKIPDPYGWMEDP--DSEETKKFVDEENAISRPYLEDH-PDRDKVKAELTKMWDYPKYSSPQRQ 114 (1012)
Q Consensus 38 ~P~a~~~~~~~~~~hG~~~~Dpy~WLed~--~~~~~~~~l~~qn~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~s~p~~d 114 (1012)
||.++|+|+ ++++||+++.|||+||||. ++|+|++||++||+||+++|++. +++++|+++|++++..++.++|.+.
T Consensus 2 pP~a~~~~~-~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 80 (686)
T PRK10115 2 LPKAARIPH-AMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIK 80 (686)
T ss_pred cCCCCCCCe-eEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEE
Confidence 788899885 4899999999999999996 59999999999999999999995 9999999999999999999999999
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCC-C---CceEEEcCCCCCCCC-CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 115 GDHYFFFHNTGLQNHSVMYIQDSL-D---GEARVFLDPNNLSDD-GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 115 G~~~yy~~~~~~~~~~~l~~~~~~-~---g~~~~L~D~n~la~~-g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
|+++||.++..+. +..||++... + +.+++|+|+|+++++ +++.++.+.|||||++|||+.+.+|+++++|+++|
T Consensus 81 g~~~y~~~~~~g~-~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d 159 (686)
T PRK10115 81 NGYRYRHIYEPGC-EYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRN 159 (686)
T ss_pred CCEEEEEEEcCCC-ccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEE
Confidence 9999998886655 5777776543 2 457999999999755 67899999999999999999999999999999999
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCC-C---------CcccCCCCCceEEEEee----------------
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPK-S---------KSKKHSKKNRSSAYHLT---------------- 243 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~-~---------~g~~~~~~~~~l~~~~~---------------- 243 (1012)
+++|+.+++.+.+.. ..++|++||++|+|++.+.. . .|+ . .....+++.+.
T Consensus 160 ~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt-~-~~~d~lv~~e~~~~~~~~~~~s~d~~~ 236 (686)
T PRK10115 160 LETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT-P-ASQDELVYEEKDDTFYVSLHKTTSKHY 236 (686)
T ss_pred CCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC-C-hhHCeEEEeeCCCCEEEEEEEcCCCCE
Confidence 999987666666665 45999999999999976421 1 121 0 00112222210
Q ss_pred ------cc--------------c---------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccC
Q psy1288 244 ------VN--------------V---------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEEN 294 (1012)
Q Consensus 244 ------~~--------------~---------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~ 294 (1012)
.+ . .+..+. ..+.++.||+.+|.++++++|+.+++.+. .+|+.|+++.
T Consensus 237 l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ly~~tn~~~~~~~l~~~~~~~~--~~~~~l~~~~ 313 (686)
T PRK10115 237 VVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYS-LDHYQHRFYLRSNRHGKNFGLYRTRVRDE--QQWEELIPPR 313 (686)
T ss_pred EEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEE-EEeCCCEEEEEEcCCCCCceEEEecCCCc--ccCeEEECCC
Confidence 00 0 011132 33567899999999999999999998753 3599999987
Q ss_pred CCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecc--cccCcEEEEEecCCCCCcEEEEE
Q psy1288 295 KDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSG--KKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~--spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
++..++.+.+.. ++|++..+.++.++|+++++.++ ....++++ ...+..++. +++++.+++.++++.+|.++|.+
T Consensus 314 ~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 391 (686)
T PRK10115 314 ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFEL 391 (686)
T ss_pred CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEE
Confidence 666777777775 89999999999999999998533 33455532 122223333 46778899999999999999999
Q ss_pred eCCCCCCCCCCcceEEEEeccCCCCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC
Q psy1288 372 NIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS 451 (1012)
Q Consensus 372 d~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~ 451 (1012)
|+ .++ +.++++....+.+++..+.+++++++|.||.+|+++++++++...+++.|+||++|||++.+..+.|+
T Consensus 392 d~-----~~~--~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~ 464 (686)
T PRK10115 392 DM-----DTG--ERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFS 464 (686)
T ss_pred EC-----CCC--cEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCcc
Confidence 99 355 56778876666688888899999999999999999888777654567789999999999999999999
Q ss_pred hhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh
Q psy1288 452 VTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN 531 (1012)
Q Consensus 452 ~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 531 (1012)
...+.|++ +||+|+.+|+||++++|+.|++.+...++.++++|+++|++||+++++++++||+|+|+|+||+|++++++
T Consensus 465 ~~~~~l~~-rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~ 543 (686)
T PRK10115 465 FSRLSLLD-RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAIN 543 (686)
T ss_pred HHHHHHHH-CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHh
Confidence 98766665 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccc
Q psy1288 532 QRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWE 611 (1012)
Q Consensus 532 ~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~ 611 (1012)
++|++|+|+|+.+| +.|+. ..|.+ +++|++. .|.
T Consensus 544 ~~Pdlf~A~v~~vp---~~D~~---------------------~~~~~----~~~p~~~------------------~~~ 577 (686)
T PRK10115 544 QRPELFHGVIAQVP---FVDVV---------------------TTMLD----ESIPLTT------------------GEF 577 (686)
T ss_pred cChhheeEEEecCC---chhHh---------------------hhccc----CCCCCCh------------------hHH
Confidence 99999999999999 33321 11111 1223322 355
Q ss_pred cccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEe
Q psy1288 612 SDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIE 691 (1012)
Q Consensus 612 ~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~ 691 (1012)
.+||+|.+++.++++.++||+++++ +++||++|++||.+|+||+++++.+|+++|++. .....+++++++
T Consensus 578 ~e~G~p~~~~~~~~l~~~SP~~~v~------~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~----~~~~~~vl~~~~ 647 (686)
T PRK10115 578 EEWGNPQDPQYYEYMKSYSPYDNVT------AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLREL----KTDDHLLLLCTD 647 (686)
T ss_pred HHhCCCCCHHHHHHHHHcCchhccC------ccCCCceeEEecCCCCCcCchHHHHHHHHHHhc----CCCCceEEEEec
Confidence 7899999888899999999999998 689999999999999999999999999999998 222455888888
Q ss_pred CCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 692 TKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 692 p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+++|||......+.+++.++.++|+..+++.
T Consensus 648 ~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 648 MDSGHGGKSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998777777789999999999998765
|
|
| >KOG2237|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-78 Score=663.86 Aligned_cols=626 Identities=42% Similarity=0.707 Sum_probs=510.8
Q ss_pred cCCCCCCccCcceeecccCccccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCCCCCCCeee
Q psy1288 35 KFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQ 114 (1012)
Q Consensus 35 ~~~~P~a~~~~~~~~~~hG~~~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~~d 114 (1012)
.+.||+++|+.++++.+||++|.|||+||||+++.++.+||++||.||+++|+++...++|..||+.+++++.+++|.+.
T Consensus 3 ~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d~~~~~~fv~~en~~t~~vl~~~e~~~kl~~em~~~i~ye~~~~p~r~ 82 (712)
T KOG2237|consen 3 PLQYPVARKDESVAEDFHGVTVEDPYRWLEDPDDTEMKEFVEAENKYTDAVLEDTETKEKLFSEMTKRIDYEIITPPLRW 82 (712)
T ss_pred CCCCCCcccccchhhhcCCceecCcchhhcCCcHHHHHHHHHHhhhhhHHHHhccHHHHHHHHHhhhccCccccCCcccc
Confidence 34799999999999999999999999999999999999999999999999999998777999999999999999999999
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCCCCceEEEc-------------CCCCCCCCC-ceEeeeEEECCCCcEEEEEEeCCCC
Q psy1288 115 GDHYFFFHNTGLQNHSVMYIQDSLDGEARVFL-------------DPNNLSDDG-TVSLGSYSFSEDGKTLAYCLSSSGS 180 (1012)
Q Consensus 115 G~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~-------------D~n~la~~g-~~~i~~~~~SPDGk~iAy~~~~~G~ 180 (1012)
|+|+||.++.+++ +..+++++....++++++ |.|++++++ ++..+-...|||.++|||+....|+
T Consensus 83 G~~yyY~~n~~lk-q~vl~~rr~~~~e~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~ 161 (712)
T KOG2237|consen 83 GPWYYYFYNTGLK-QYVLYCRRLLEKEEEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGK 161 (712)
T ss_pred CCEEEEEEcCCce-ehhHHHHhhhhcccceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCC
Confidence 9999999999887 677777665544444444 444555442 3455555677888888888777777
Q ss_pred ceEEEEEEECCCCceeceeecceeeeeeEEee-CCCeEEEEecCCCC---------CcccCCCCCceEEEEeecc-----
Q psy1288 181 DWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH-DHKGVFYSNQEPKS---------KSKKHSKKNRSSAYHLTVN----- 245 (1012)
Q Consensus 181 ~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSp-DG~~l~y~~~~~~~---------~g~~~~~~~~~l~~~~~~~----- 245 (1012)
+.+.+ |.++...+... +....+++..+|.. ||..|.|.+.+... .|+ ++ ..+.+++++..+
T Consensus 162 e~~~~-v~~~~~~~~~~-~~~~~g~~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~~Gt-dq-~~Dvl~~~e~d~~~~vf 237 (712)
T KOG2237|consen 162 ELFTV-VIDVKFSGPVW-THDGKGVSYLAWAKQDGEDLLYGTEDENNRPHKVYYHTLGT-DQ-SEDVLLYEEKDEPKHVF 237 (712)
T ss_pred cccee-eeeeccCCcee-eccCCceEeeeecccCCceeeeeeeccccCcceEEEEeccc-CC-CcceEEEecCCCCeEEE
Confidence 77777 77776666532 23334456778876 77777666543211 121 11 112233332100
Q ss_pred -----------------------c----------ccee----------------eeeeecCCCEEEEEECCCCCCceEEE
Q psy1288 246 -----------------------V----------APIT----------------SQYITNEGPQFVFKTNKDAPNYRLIT 276 (1012)
Q Consensus 246 -----------------------~----------~~i~----------------~~~~s~dg~~l~~~tn~~~~~~~L~~ 276 (1012)
. .++. +..+..++..++|++|.++++..+.+
T Consensus 238 ~~~~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r 317 (712)
T KOG2237|consen 238 ISETKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFVEHYDFITNEGTEFYFLTNKDAPNYYLLR 317 (712)
T ss_pred EEEEecCceEEEEEeeccCCccceEEEEecccccCCcchheeeccchhhhhhhhhhheeccCcceeeeccCCCCceeEEe
Confidence 0 0000 23455567899999999999999999
Q ss_pred EeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEE
Q psy1288 277 IDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIF 356 (1012)
Q Consensus 277 ~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~ 356 (1012)
+++..++...|+.++.+.+..+++++...+++.+++.+..+....+.+.++.+|...+.+++|.+++..+....+.+.++
T Consensus 318 ~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~ 397 (712)
T KOG2237|consen 318 IDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIR 397 (712)
T ss_pred eeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEE
Confidence 99988877789999999999999998888877888888887766665666667777788999988887777777789999
Q ss_pred EEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccC--CCCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcE
Q psy1288 357 YSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKV--PDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPC 434 (1012)
Q Consensus 357 ~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~ 434 (1012)
|.++|+.+|+.+|.||+. .|..+..++.+... ++++.+.|+++++++.|.||+.||+++++.++.+.+++.|+
T Consensus 398 f~~sS~l~P~~iy~yDl~-----~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~ 472 (712)
T KOG2237|consen 398 FQFSSFLTPGSIYDYDLA-----NGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPL 472 (712)
T ss_pred EEEeccCCCCeEEEeecc-----CCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhhhcCCCce
Confidence 999999999999999994 55334556665544 78999999999999999999999999999888888899999
Q ss_pred EEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcE
Q psy1288 435 ILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRL 514 (1012)
Q Consensus 435 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i 514 (1012)
+|++|||++.++++.|..+.+.++. +|++++.+|+||||++|..|+..|+...++|.|+|+++|++||++++++.|+++
T Consensus 473 LLygYGay~isl~p~f~~srl~lld-~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL 551 (712)
T KOG2237|consen 473 LLYGYGAYGISLDPSFRASRLSLLD-RGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKL 551 (712)
T ss_pred EEEEecccceeeccccccceeEEEe-cceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccce
Confidence 9999999999999999988777777 799999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhh
Q psy1288 515 AIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHK 594 (1012)
Q Consensus 515 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~ 594 (1012)
++.|+|+||++++++++++|++|+|+|+.+|
T Consensus 552 ~i~G~SaGGlLvga~iN~rPdLF~avia~Vp------------------------------------------------- 582 (712)
T KOG2237|consen 552 AIEGGSAGGLLVGACINQRPDLFGAVIAKVP------------------------------------------------- 582 (712)
T ss_pred eEecccCccchhHHHhccCchHhhhhhhcCc-------------------------------------------------
Confidence 9999999999999999999999999999999
Q ss_pred hhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHh
Q psy1288 595 VLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQE 674 (1012)
Q Consensus 595 ~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~ 674 (1012)
.+|+++++.+++++.|..+|+...+++.++++..++|++++++|. +...||.+|+..+.+|+||.++++.+|.++|+.
T Consensus 583 fmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~i~~y~pv~~i~--~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre 660 (712)
T KOG2237|consen 583 FMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIKISPYSPVDNIK--KQVQYPSMLVTTADHDDRVGPLESLKWVAKLRE 660 (712)
T ss_pred ceehhhhhccCccccchhhhcccCChhhhhhhheecccCccCCCc--hhccCcceEEeeccCCCcccccchHHHHHHHHH
Confidence 566677777777777777666555555666666666655555431 233599999999999999999999999999999
Q ss_pred hhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 675 KLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 675 ~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+...+..+..++++.+++++||+.++++.+++++.++.++||.+.+..
T Consensus 661 ~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~~ 708 (712)
T KOG2237|consen 661 ATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLNS 708 (712)
T ss_pred HhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhcC
Confidence 876655556889999999999999999999999999999999998764
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=602.57 Aligned_cols=587 Identities=37% Similarity=0.609 Sum_probs=480.8
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCCCCCCCeeeCCEEEEEEEcCCCCeeEEEEE
Q psy1288 56 IPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQ 135 (1012)
Q Consensus 56 ~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~~dG~~~yy~~~~~~~~~~~l~~~ 135 (1012)
..|||+||||.+++|+++|+++||+.|..+|...+.++.+.+++.+++.+++++.|+..|+++|..+++. ++...+|++
T Consensus 2 ~~DPy~wlEd~~~~eal~wv~~~N~~t~~~L~~~~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~-~~p~Glwr~ 80 (648)
T COG1505 2 VPDPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDA-LYPRGLYRR 80 (648)
T ss_pred CCCcchhhhcCCcHHHHHHHHhhhhHHHHHhhcchhhHHHHHHHHHHhhccccCcceeccceeEEeeccc-cCcceeEEe
Confidence 5799999999999999999999999999999999999999999999999999999999999999999875 466789988
Q ss_pred eCC------CCceEEEcCCCCCCCCC--ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeee
Q psy1288 136 DSL------DGEARVFLDPNNLSDDG--TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVS 207 (1012)
Q Consensus 136 ~~~------~g~~~~L~D~n~la~~g--~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~ 207 (1012)
... .++|++|+|+++|+++. .+.....+.+|||++++|+.+.+|+++..++++|+++|+..... +..+..
T Consensus 81 ttl~syrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~--~f~~~~ 158 (648)
T COG1505 81 TTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEE--GFKFPG 158 (648)
T ss_pred ecceeecccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEecccccccCC--Cccccc
Confidence 643 57899999999998773 67788888889999999999999999999999999999876543 223344
Q ss_pred eEEeeCCCeEEEEecCCCC----Cccc------------CCCCCceEEEEee--------------c-----------cc
Q psy1288 208 IAWTHDHKGVFYSNQEPKS----KSKK------------HSKKNRSSAYHLT--------------V-----------NV 246 (1012)
Q Consensus 208 ~~WSpDG~~l~y~~~~~~~----~g~~------------~~~~~~~l~~~~~--------------~-----------~~ 246 (1012)
+.|..++ +++|.+..... .|.. ...+....++... . +.
T Consensus 159 ~~wld~d-~~~~~~~~~~~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 237 (648)
T COG1505 159 ISWLDDD-GVFVSRYWRPKEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSG 237 (648)
T ss_pred eEEecCC-CEEEecccCCcccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccchhhheeeEeccC
Confidence 8999887 66666533211 1110 0001111111000 0 00
Q ss_pred cc-eeee---eeecCCCEEEEEECCC-----CCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcC
Q psy1288 247 AP-ITSQ---YITNEGPQFVFKTNKD-----APNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHH 317 (1012)
Q Consensus 247 ~~-i~~~---~~s~dg~~l~~~tn~~-----~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (1012)
++ +... ..+-.-++|++....+ .....|+.......+......++.......++++...+ +.+++...++
T Consensus 238 ~~~~~l~~p~~~~~~~~~l~~~~r~dw~~~~~~~g~l~l~~~e~~~~g~~~a~~~P~~~~~le~v~tt~-~~~va~~l~n 316 (648)
T COG1505 238 KGLIKLGLPDKVGYEWGKLVNTLRADWTFADVDYGLLYLLTDEDLELGKVIAEFIPEEEQSLEQVVTTK-DKLVAGTLDN 316 (648)
T ss_pred CCceeccCCccccceeeeeeEeecccccccCcccceEEEEehhccccCceeEEecCCcccceeeeEEEc-CeEEeeeehh
Confidence 00 0000 0111123344433221 11233333332221111122244444567788888887 8899999999
Q ss_pred ceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccCCCC
Q psy1288 318 VKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDF 396 (1012)
Q Consensus 318 g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~~ 396 (1012)
..+++.+++. .|...+.++++ .+.+..++.+.+|+++++.++++++|+++|++++ .++ +.+.+++. ...|
T Consensus 317 v~~~l~v~~~-~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~-----~~~--eLe~ik~~-p~~F 387 (648)
T COG1505 317 VSGRLEVYDL-KGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDL-----FGG--ELEVIREQ-PVQF 387 (648)
T ss_pred ccceEEEecc-CceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEec-----CCc--eehhhhhc-cCCc
Confidence 9999999998 56666777776 5666555667788999999999999999999998 344 55666653 3469
Q ss_pred CCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCC
Q psy1288 397 DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEY 476 (1012)
Q Consensus 397 ~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~ 476 (1012)
+++++.+++.+.+|.||++||+++++ ++.+.+ +.|++|+.|||+..+.+|.|++....||. +|.+++.+|+||+|+|
T Consensus 388 Da~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~fs~~~~~WLe-rGg~~v~ANIRGGGEf 464 (648)
T COG1505 388 DADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLE-RGGVFVLANIRGGGEF 464 (648)
T ss_pred CccCceEEEEEEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccccCCccchhhHHHHh-cCCeEEEEecccCCcc
Confidence 99999999999999999999999999 887777 89999999999999999999998888888 6999999999999999
Q ss_pred chhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCccee
Q psy1288 477 GERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWL 556 (1012)
Q Consensus 477 g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~ 556 (1012)
|..||+++.+..+++.|+||.++++.|++++++.|++|+|.|+|+||+++..+++++|++|.|+|+.+|
T Consensus 465 Gp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evP----------- 533 (648)
T COG1505 465 GPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVP----------- 533 (648)
T ss_pred CHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCC
Q psy1288 557 IVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQ 636 (1012)
Q Consensus 557 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~ 636 (1012)
++||+||+.+.+|..|+.|||+|.+|+++..+.+|||++|++
T Consensus 534 --------------------------------------llDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~ 575 (648)
T COG1505 534 --------------------------------------LLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLK 575 (648)
T ss_pred --------------------------------------hhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcCchhcCC
Confidence 899999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHH
Q psy1288 637 GPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFY 716 (1012)
Q Consensus 637 ~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl 716 (1012)
++.+||++||.++.+|.||+|+|+++|+++|+++ +.++.++.+-++||+.+.+..+...+.++.+.||
T Consensus 576 -----~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~-------~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl 643 (648)
T COG1505 576 -----PGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEV-------GAPVLLREETKGGHGGAAPTAEIARELADLLAFL 643 (648)
T ss_pred -----ccccCCCeEEEcccccccccchHHHHHHHHHHhc-------CCceEEEeecCCcccCCCChHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999 8999999999999999998888789999999999
Q ss_pred HHhC
Q psy1288 717 LTSG 720 (1012)
Q Consensus 717 ~~~l 720 (1012)
.+.|
T Consensus 644 ~r~L 647 (648)
T COG1505 644 LRTL 647 (648)
T ss_pred HHhh
Confidence 9876
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=372.55 Aligned_cols=342 Identities=33% Similarity=0.615 Sum_probs=264.5
Q ss_pred CCCccCcceeecccCccccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccC-CChHHHHHHHhhcccCCCCCCCeeeCCE
Q psy1288 39 PKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDH-PDRDKVKAELTKMWDYPKYSSPQRQGDH 117 (1012)
Q Consensus 39 P~a~~~~~~~~~~hG~~~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~-~~~~~l~~~~~~~~~~~~~s~p~~dG~~ 117 (1012)
|+++|++.+++++||+++.|||+||||.++|+|++||++||+|++++|+++ ++++.|.++|++++..++.++|...|++
T Consensus 1 P~~~~~~~~~~~~hg~~~~DpY~WLed~~~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~~ 80 (414)
T PF02897_consen 1 PPTARKPPVVETLHGVTITDPYRWLEDDDSPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGGY 80 (414)
T ss_dssp S-TTS-TTSEEEETTEEEE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETTE
T ss_pred CCCCCCCCeeeecCCCEeecCchhhcCCCCHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECCe
Confidence 444444435599999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred EEEEEEcCCCCeeEEEEEeCC--CCc-eEEEcCCCCCCCCC-ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy1288 118 YFFFHNTGLQNHSVMYIQDSL--DGE-ARVFLDPNNLSDDG-TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATG 193 (1012)
Q Consensus 118 ~yy~~~~~~~~~~~l~~~~~~--~g~-~~~L~D~n~la~~g-~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg 193 (1012)
+||.+..+++++..+||+... +++ +++|+|+|++++++ ...++.+++||||++|||+++.+|+++++|+++|+++|
T Consensus 81 ~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg 160 (414)
T PF02897_consen 81 YYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG 160 (414)
T ss_dssp EEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT
T ss_pred EEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC
Confidence 999999888889999999887 344 59999999999886 67788999999999999999999999999999999999
Q ss_pred ceeceeecceeeeeeEEeeCCCeEEEEecCCCCC---------------cccCCCCCceEEEEee---------------
Q psy1288 194 KEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSK---------------SKKHSKKNRSSAYHLT--------------- 243 (1012)
Q Consensus 194 ~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~---------------g~~~~~~~~~l~~~~~--------------- 243 (1012)
+.+.+.+.....+++.|++||+.|+|++.+.... |+ . .....++|.+.
T Consensus 161 ~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt-~-~~~d~lvfe~~~~~~~~~~~~~s~d~ 238 (414)
T PF02897_consen 161 KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT-P-QSEDELVFEEPDEPFWFVSVSRSKDG 238 (414)
T ss_dssp EEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS---GGG-EEEEC-TTCTTSEEEEEE-TTS
T ss_pred cCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC-C-hHhCeeEEeecCCCcEEEEEEecCcc
Confidence 9888777777656699999999999998544211 11 0 00111222110
Q ss_pred ----------cc--c-------c------cee---------eeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcE-
Q psy1288 244 ----------VN--V-------A------PIT---------SQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWK- 288 (1012)
Q Consensus 244 ----------~~--~-------~------~i~---------~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~- 288 (1012)
.. . . ... ...+.+.|+.||+++|.++++++|++++++.+....|.
T Consensus 239 ~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~ 318 (414)
T PF02897_consen 239 RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWT 318 (414)
T ss_dssp SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE
T ss_pred cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccccccee
Confidence 00 0 1 000 22356679999999999999999999999988755566
Q ss_pred EeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcE
Q psy1288 289 TLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTI 367 (1012)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~ 367 (1012)
.++++.+...+..+..++ ++|++.++.++.++|.++++..+.....++++ .+++.+.+.+++++.++|.++++.+|+.
T Consensus 319 ~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~ 397 (414)
T PF02897_consen 319 VLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPT 397 (414)
T ss_dssp EEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEE
T ss_pred EEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCE
Confidence 666666666888888776 89999999999999999999536655667766 6777788888899999999999999999
Q ss_pred EEEEeCCCCCCCCCCcceEEEEe
Q psy1288 368 IFHCNIPARVDPNSKLETSIFRE 390 (1012)
Q Consensus 368 l~~~d~~~~~~~~g~~~~~~l~~ 390 (1012)
+|.+|+ +++ +.+++++
T Consensus 398 ~y~~d~-----~t~--~~~~~k~ 413 (414)
T PF02897_consen 398 VYRYDL-----ATG--ELTLLKQ 413 (414)
T ss_dssp EEEEET-----TTT--CEEEEEE
T ss_pred EEEEEC-----CCC--CEEEEEe
Confidence 999999 577 5666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=359.15 Aligned_cols=515 Identities=19% Similarity=0.234 Sum_probs=347.2
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEe-----CCC-------
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLS-----SSG------- 179 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~-----~~G------- 179 (1012)
+|+|..+++..+.++ ...++|+.+.. + .+.. ....+....|||+|+.+++... ..|
T Consensus 68 spdg~~~~~~~~~~~-~~~~l~l~~~~-g---~~~~-------~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 135 (620)
T COG1506 68 SPDGSVLAFVSTDGG-RVAQLYLVDVG-G---LITK-------TAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVD 135 (620)
T ss_pred CCCCCEEEEEeccCC-CcceEEEEecC-C---ceee-------eecccccceeCCCCCeEEEEecccccccCCceeeeec
Confidence 599999999985543 36788888765 3 1111 1245778999999999999321 112
Q ss_pred ----------CceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCC-CCcc----cCCCCCceEEEEeec
Q psy1288 180 ----------SDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPK-SKSK----KHSKKNRSSAYHLTV 244 (1012)
Q Consensus 180 ----------~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~-~~g~----~~~~~~~~l~~~~~~ 244 (1012)
.+..+++++|.++ +..........+..++|.+|++.++....... .... .....+..+.... .
T Consensus 136 ~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 213 (620)
T COG1506 136 RLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLT-P 213 (620)
T ss_pred ccceeecCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEc-C
Confidence 1456788888766 33333344444566777777777777654422 1000 0000000000000 0
Q ss_pred cccceeeeeeecCCCEEEEEECCCC----CCceEEEEeCCCCcccCcEEeeccCC---C-ceeeeeEEecCCEEEEEEEc
Q psy1288 245 NVAPITSQYITNEGPQFVFKTNKDA----PNYRLITIDFDNFAESNWKTLIEENK---D-DVLDWATCVANDKLILSYIH 316 (1012)
Q Consensus 245 ~~~~i~~~~~s~dg~~l~~~tn~~~----~~~~L~~~dl~~~~~~~~~~l~~~~~---~-~~~~~~~~~~~~~l~~~~~~ 316 (1012)
....+....+.++|+.+++..+... ....++..+....+. .......+ . ..+... .+++.+++....
T Consensus 214 ~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 288 (620)
T COG1506 214 GEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEV---DGDLSSGDDTRGAWAVEGG--LDGDGLLFIATD 288 (620)
T ss_pred CCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEecccccc---ceeeccCCcccCcHHhccc--cCCCcEEEEEec
Confidence 0012334457889998888876432 233444444222221 11111111 0 001111 233556665555
Q ss_pred -CceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccCCC
Q psy1288 317 -HVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPD 395 (1012)
Q Consensus 317 -~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~ 395 (1012)
.+...++..+...+. ...+..+.+.+..++. +++.+++..+++..|+++|.++. .. +.+++.. ....
T Consensus 289 ~~g~~~l~~~~~~~~~-~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~------~~--~~~~~~~-~~~~ 356 (620)
T COG1506 289 GGGSSPLFRVDDLGGG-VEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR------GE--EAKLTSS-NNSG 356 (620)
T ss_pred CCCceEEEEEeccCCc-eeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC------CC--ceEEeec-cccc
Confidence 555555555542222 2334444466666654 88999999999999999999985 11 2222222 1222
Q ss_pred C-CCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCC
Q psy1288 396 F-DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGG 474 (1012)
Q Consensus 396 ~-~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g 474 (1012)
+ ......++.+++.+.||.+|.++++.|.++++.+++|+||++|||+.......|.... +.++.+||+|+.+|+||++
T Consensus 357 ~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~-q~~~~~G~~V~~~n~RGS~ 435 (620)
T COG1506 357 LKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEI-QVLASAGYAVLAPNYRGST 435 (620)
T ss_pred ccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhh-HHHhcCCeEEEEeCCCCCC
Confidence 2 2234578999999999999999999999998888899999999999777776777664 5566689999999999999
Q ss_pred CCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcc
Q psy1288 475 EYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGR 554 (1012)
Q Consensus 475 ~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~ 554 (1012)
+||+.|.+...+.++...++|+.++++++.+.+.+|++||+|+|+|+||+|+++++++.| +|+++++..+ +++|..
T Consensus 436 GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~---~~~~~~ 511 (620)
T COG1506 436 GYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAG---GVDWLL 511 (620)
T ss_pred ccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccC---cchhhh
Confidence 999999999999999999999999999999999999999999999999999999999877 8888888877 433211
Q ss_pred eeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccC
Q psy1288 555 WLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHN 634 (1012)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~ 634 (1012)
.+. ..+. ... ..+....+.+.. ..+.++..||+.+
T Consensus 512 ~~~----------------~~~~-------------------~~~--------~~~~~~~~~~~~--~~~~~~~~sp~~~ 546 (620)
T COG1506 512 YFG----------------ESTE-------------------GLR--------FDPEENGGGPPE--DREKYEDRSPIFY 546 (620)
T ss_pred hcc----------------ccch-------------------hhc--------CCHHHhCCCccc--ChHHHHhcChhhh
Confidence 110 0000 000 001011122221 3456899999999
Q ss_pred CCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHH
Q psy1288 635 IQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIY 714 (1012)
Q Consensus 635 ~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~ 714 (1012)
+. ++++| +|+|||..|.+|+..|+.+++.+|+.. +++++++++|+++|++..+.+ ..+.+..+++
T Consensus 547 ~~------~i~~P-~LliHG~~D~~v~~~q~~~~~~aL~~~-------g~~~~~~~~p~e~H~~~~~~~-~~~~~~~~~~ 611 (620)
T COG1506 547 AD------NIKTP-LLLIHGEEDDRVPIEQAEQLVDALKRK-------GKPVELVVFPDEGHGFSRPEN-RVKVLKEILD 611 (620)
T ss_pred hc------ccCCC-EEEEeecCCccCChHHHHHHHHHHHHc-------CceEEEEEeCCCCcCCCCchh-HHHHHHHHHH
Confidence 88 78999 999999999999999999999999998 999999999999999988544 4678889999
Q ss_pred HHHHhCCC
Q psy1288 715 FYLTSGPV 722 (1012)
Q Consensus 715 fl~~~l~~ 722 (1012)
|+.++++.
T Consensus 612 ~~~~~~~~ 619 (620)
T COG1506 612 WFKRHLKQ 619 (620)
T ss_pred HHHHHhcC
Confidence 99999764
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-32 Score=301.76 Aligned_cols=133 Identities=27% Similarity=0.596 Sum_probs=120.2
Q ss_pred CEEEEEe--CCCCCCCCCCchhhhhhhhhccCCCCcccccccceEE-eeccCCCCcEEEEeeCCCCCCCCCCcceeEEEe
Q psy1288 854 PLLIRIE--TKAGHGGGKPTTKQLCVRYMMGGHFTVEFIRSVTTIR-TFMSFLQPTIIFHCNIPARVDPNSKLETSIFRE 930 (1012)
Q Consensus 854 ~~~~~~~--~~~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1012)
|...+.. .+|-|++. .....+.++++.|+||+ +..+| .|+||+||.++|+|||.++ ++++||+
T Consensus 340 p~v~v~~~~~~~~~~i~-----f~~~ay~~~l~~~~e~~--s~~lR~~ysS~ttP~~~~~~dm~t~-------er~~Lkq 405 (682)
T COG1770 340 PRVVVRDRKTGEERGIA-----FDDEAYSAGLSGNPEFD--SDRLRYSYSSMTTPATLFDYDMATG-------ERTLLKQ 405 (682)
T ss_pred ceEEEEecCCCceeeEE-----ecchhhhccccCCCCCC--CccEEEEeecccccceeEEeeccCC-------cEEEEEe
Confidence 6666553 34556543 22345778889999999 99999 9999999999999999998 9999999
Q ss_pred eecCC-cCCCCcEEEEEEEeCCCCceeceEEEEecCCCCCCCCceEEEeccccCCCCCCCccccceecccc
Q psy1288 931 IKVPD-FDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD 1000 (1012)
Q Consensus 931 ~~~~~-~~~~~y~~~~~~~~~~dg~~vp~~~~~~~~~~~~~~~p~~l~gyg~y~~~~~p~f~~~~~~l~~~ 1000 (1012)
|+||+ |||++|++||+||+++||++||||||||||.+++|++|||||||||||+||+|+||..|||||||
T Consensus 406 qeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDR 476 (682)
T COG1770 406 QEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDR 476 (682)
T ss_pred ccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccceeeeecC
Confidence 99995 99999999999999999999999999999999999999999999999999999999999999998
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=280.57 Aligned_cols=198 Identities=17% Similarity=0.177 Sum_probs=149.1
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc------hhhhhHHHHHHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ------FPLTIPVIYFYL 717 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~------~~~~~~~~~fl~ 717 (1012)
.+.|.+|.+||+......+..+.. .+.... .+.+++..|.+||.|+|+.+.+. ...+.|.++.++
T Consensus 443 ~~~P~ll~~hGg~~~~~~p~f~~~--~~~l~~-------rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~ 513 (686)
T PRK10115 443 GHNPLLVYGYGSYGASIDADFSFS--RLSLLD-------RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACD 513 (686)
T ss_pred CCCCEEEEEECCCCCCCCCCccHH--HHHHHH-------CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHH
Confidence 356999999999655544443322 234444 78999999999999999765442 123344444444
Q ss_pred HhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCC---CCCCCCcccCCCCC
Q psy1288 718 TSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKF---TIGYFWESDYGSPA 787 (1012)
Q Consensus 718 ~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~g~~~ 787 (1012)
..+.. ++.++.+++ ||||| ||.++++++++|++|.| |++||++++.. .....|+.|||+|+
T Consensus 514 ~Lv~~--g~~d~~rl~i~G~S~G-------G~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~ 584 (686)
T PRK10115 514 ALLKL--GYGSPSLCYGMGGSAG-------GMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQ 584 (686)
T ss_pred HHHHc--CCCChHHeEEEEECHH-------HHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCC
Confidence 33333 677788887 99999 88887888888888866 89999988532 23444668999999
Q ss_pred ChhhhhHhHcCCCCCCCCCCCCCCCCCCCc-eEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 788 NSSQFEYLLGYSPLHNIQGPNELKGKQYPA-TLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 788 ~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p-~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
++++++.+..+||++||+ ++++| +||+||+||+|||++|++||+++||++|++ .++++|.+.+++|||
T Consensus 585 ~~~~~~~l~~~SP~~~v~-------~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~----~~~vl~~~~~~~GHg 653 (686)
T PRK10115 585 DPQYYEYMKSYSPYDNVT-------AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTD----DHLLLLCTDMDSGHG 653 (686)
T ss_pred CHHHHHHHHHcCchhccC-------ccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCC----CceEEEEecCCCCCC
Confidence 888899999999999999 78888 678899999999999999999999999882 234555555999999
Q ss_pred CCCC
Q psy1288 867 GGKP 870 (1012)
Q Consensus 867 ~~~~ 870 (1012)
..+.
T Consensus 654 ~~~~ 657 (686)
T PRK10115 654 GKSG 657 (686)
T ss_pred CCcC
Confidence 6553
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=284.15 Aligned_cols=205 Identities=16% Similarity=0.194 Sum_probs=159.5
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccch------hhhhHHHHHH
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQF------PLTIPVIYFY 716 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~------~~~~~~~~fl 716 (1012)
+++||.+|.+||++..++. .++.+..+..+. .+++++.+|++|+.|+|+.+.+.. .++.|+++.+
T Consensus 391 ~k~yP~i~~~hGGP~~~~~--~~~~~~~q~~~~-------~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~ 461 (620)
T COG1506 391 RKKYPLIVYIHGGPSAQVG--YSFNPEIQVLAS-------AGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461 (620)
T ss_pred CCCCCEEEEeCCCCccccc--cccchhhHHHhc-------CCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHH
Confidence 4679999999999766555 566777777777 899999999999999988765532 3556666666
Q ss_pred HHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCcc--c-CCCC
Q psy1288 717 LTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWES--D-YGSP 786 (1012)
Q Consensus 717 ~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~-~g~~ 786 (1012)
+..... +..|+.+++ |+||| +||+++++++.+ .|.| +++||+.++.......|.. + .+.+
T Consensus 462 ~~l~~~--~~~d~~ri~i~G~SyG-------Gymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (620)
T COG1506 462 DALVKL--PLVDPERIGITGGSYG-------GYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGP 531 (620)
T ss_pred HHHHhC--CCcChHHeEEeccChH-------HHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCCCc
Confidence 622222 556666666 99999 999999999988 5544 5666666655544443432 2 2322
Q ss_pred CChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 787 ANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 787 ~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
.. +.+.++.+||+++++ ++++|+|||||++|+|||+.||++|+++||++|+ +++|++||+|||+
T Consensus 532 ~~--~~~~~~~~sp~~~~~-------~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~-------~~~~~~~p~e~H~ 595 (620)
T COG1506 532 PE--DREKYEDRSPIFYAD-------NIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGK-------PVELVVFPDEGHG 595 (620)
T ss_pred cc--ChHHHHhcChhhhhc-------ccCCCEEEEeecCCccCChHHHHHHHHHHHHcCc-------eEEEEEeCCCCcC
Confidence 21 567789999999999 9999999999999999999999999999999999 9999999999999
Q ss_pred CCCCchhhhhhhhhcc
Q psy1288 867 GGKPTTKQLCVRYMMG 882 (1012)
Q Consensus 867 ~~~~~~~~~~~~~~~~ 882 (1012)
+.++.|++..+..++.
T Consensus 596 ~~~~~~~~~~~~~~~~ 611 (620)
T COG1506 596 FSRPENRVKVLKEILD 611 (620)
T ss_pred CCCchhHHHHHHHHHH
Confidence 9999888877766543
|
|
| >KOG2100|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-22 Score=239.61 Aligned_cols=337 Identities=17% Similarity=0.152 Sum_probs=239.0
Q ss_pred cCCEEEEEEEcC--ceEEEEEEecCCCceeeeecCC----ceEEEeecccccCcEEEEEecCCCCCcEEEEEeCCCCCCC
Q psy1288 306 ANDKLILSYIHH--VKNVMHLHDLASGKHLYTFPLD----VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDP 379 (1012)
Q Consensus 306 ~~~~l~~~~~~~--g~~~l~~~dl~~G~~~~~l~~~----~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~ 379 (1012)
+.+.+++..... +..+|+.+++.++.. ..++.. ...+...+++...+.++..+..+..|.. .+... .
T Consensus 398 ~~~~i~f~~~~~~~~~~~ly~i~~~~~~~-~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~--~~~~~----~ 470 (755)
T KOG2100|consen 398 DSNRIYFDAYEEDPSERHLYSISLGSGTV-ESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG--QLTRH----S 470 (755)
T ss_pred CCceEEEEecCCCCCceEEEEEEcccccc-ccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc--eeecc----c
Confidence 446777777664 457888888865432 234433 2344455666666777777766666643 12211 0
Q ss_pred CCC-cceEEEEecc-CC----CCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcCh
Q psy1288 380 NSK-LETSIFREIK-VP----DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSV 452 (1012)
Q Consensus 380 ~g~-~~~~~l~~~~-~~----~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~ 452 (1012)
+.. .+...|.... .. .+.......+.+.+ ||....+.+..|+++...++.|+++.+|||++.... ..|..
T Consensus 471 ~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~---~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~ 547 (755)
T KOG2100|consen 471 SKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI---DGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSV 547 (755)
T ss_pred cccceEEEEeccChhhHHHhhcccCCcceeEEEEe---ccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEe
Confidence 110 0112222211 00 11111223344444 899999999999999999999999999999974432 23333
Q ss_pred hHH-HHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh
Q psy1288 453 TKI-VFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN 531 (1012)
Q Consensus 453 ~~~-~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 531 (1012)
.+. ..+..+|++|+.+|.||++++|..+.....+..+....+|.+.+++++++..++|++||+|+|+|+||++++.++.
T Consensus 548 ~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~ 627 (755)
T KOG2100|consen 548 DWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLE 627 (755)
T ss_pred cHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhh
Confidence 332 2355679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-CceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccccccccc
Q psy1288 532 QRP-DLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFW 610 (1012)
Q Consensus 532 ~~p-~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~ 610 (1012)
..| +.|+|+++.+| |+||..+.++ +
T Consensus 628 ~~~~~~fkcgvavaP---Vtd~~~yds~---------------------------------------------------~ 653 (755)
T KOG2100|consen 628 SDPGDVFKCGVAVAP---VTDWLYYDST---------------------------------------------------Y 653 (755)
T ss_pred hCcCceEEEEEEecc---eeeeeeeccc---------------------------------------------------c
Confidence 987 78999999999 8876522111 1
Q ss_pred cccc-CCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEE
Q psy1288 611 ESDY-GSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIR 689 (1012)
Q Consensus 611 ~~~~-g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~ 689 (1012)
.++| |.|.+.. ..+...++...+. .++.|-+|++||..|.+|++.++.+++.+|+.+ |.++.+.
T Consensus 654 terymg~p~~~~--~~y~e~~~~~~~~------~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~-------gv~~~~~ 718 (755)
T KOG2100|consen 654 TERYMGLPSEND--KGYEESSVSSPAN------NIKTPKLLLIHGTEDDNVHFQQSAILIKALQNA-------GVPFRLL 718 (755)
T ss_pred cHhhcCCCcccc--chhhhccccchhh------hhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC-------CCceEEE
Confidence 1233 4443221 1255566666665 567776899999999999999999999999999 9999999
Q ss_pred EeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 690 IETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 690 ~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+||++.|++...... ...+..+..|+..++..
T Consensus 719 vypde~H~is~~~~~-~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 719 VYPDENHGISYVEVI-SHLYEKLDRFLRDCFGS 750 (755)
T ss_pred EeCCCCcccccccch-HHHHHHHHHHHHHHcCc
Confidence 999999999875432 35666777898877654
|
|
| >KOG2281|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=229.93 Aligned_cols=334 Identities=16% Similarity=0.207 Sum_probs=234.8
Q ss_pred EEEEEEEcCc--eEEEEEEecC-CCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcce
Q psy1288 309 KLILSYIHHV--KNVMHLHDLA-SGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLET 385 (1012)
Q Consensus 309 ~l~~~~~~~g--~~~l~~~dl~-~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~ 385 (1012)
.+++..+.++ ..+|++..+. .|+. .+++.+..+. ....+.+=+.++..+++-..|+.+..+.+. .++...
T Consensus 517 LVYf~gt~d~PlE~hLyvvsye~~g~~-~rlt~~g~sh-~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls-----~~~~~~ 589 (867)
T KOG2281|consen 517 LVYFVGTKDTPLEHHLYVVSYENPGEI-ARLTEPGYSH-SCELDQQCDHFVSYYSSVGSPPCVSLYSLS-----WPENDP 589 (867)
T ss_pred EEEEEccCCCCceeeEEEEEEecCCce-eeccCCCccc-chhhhhhhhhHhhhhhcCCCCceEEEEecc-----CCccCc
Confidence 4566666665 3689998886 4554 5566553222 112333334455566788889988877762 221011
Q ss_pred EEEEecc-----C-CCCCCCCCc-eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcCh---hH
Q psy1288 386 SIFREIK-----V-PDFDPSLFE-TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSV---TK 454 (1012)
Q Consensus 386 ~~l~~~~-----~-~~~~~~~~~-~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~---~~ 454 (1012)
+..+.. . ....+.++. ++-+.+.++.|..+.+.++.|.++++.+++|+++++|||++.++- ..|.. ..
T Consensus 590 -l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR 668 (867)
T KOG2281|consen 590 -LPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLR 668 (867)
T ss_pred -ccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhh
Confidence 111110 0 011223443 466778888899999999999999999999999999999988753 33432 23
Q ss_pred HHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc-CCCCCCcEEEEecChHHHHHHHHHhhC
Q psy1288 455 IVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQR 533 (1012)
Q Consensus 455 ~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~ 533 (1012)
...|+++||+|+.+|-||+...|..|...-+...+.-.++|.+.++++|.++ +++|++||+|.|+|+||+|++..+.++
T Consensus 669 ~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~ 748 (867)
T KOG2281|consen 669 FCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQY 748 (867)
T ss_pred hhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcC
Confidence 4567889999999999999999999988888888999999999999999998 589999999999999999999999999
Q ss_pred CCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccc
Q psy1288 534 PDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESD 613 (1012)
Q Consensus 534 p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~ 613 (1012)
|++|+++|+++| |++|..|.. .+.+.
T Consensus 749 P~IfrvAIAGap---VT~W~~YDT---------------------------------------------------gYTER 774 (867)
T KOG2281|consen 749 PNIFRVAIAGAP---VTDWRLYDT---------------------------------------------------GYTER 774 (867)
T ss_pred cceeeEEeccCc---ceeeeeecc---------------------------------------------------cchhh
Confidence 999999999999 888643321 01111
Q ss_pred c-CCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeC
Q psy1288 614 Y-GSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIET 692 (1012)
Q Consensus 614 ~-g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p 692 (1012)
| |-|...+ +.+.+-|-..++.+ |+...- .+|++||.-|..|++.|...+..+|..+ |++.++.+||
T Consensus 775 YMg~P~~nE--~gY~agSV~~~Vek---lpdepn-RLlLvHGliDENVHF~Hts~Lvs~lvka-------gKpyeL~IfP 841 (867)
T KOG2281|consen 775 YMGYPDNNE--HGYGAGSVAGHVEK---LPDEPN-RLLLVHGLIDENVHFAHTSRLVSALVKA-------GKPYELQIFP 841 (867)
T ss_pred hcCCCccch--hcccchhHHHHHhh---CCCCCc-eEEEEecccccchhhhhHHHHHHHHHhC-------CCceEEEEcc
Confidence 1 2221111 11111122222210 001111 2999999999999999999999999999 9999999999
Q ss_pred CCCCCCCCccccchhhhhHHHHHHHH
Q psy1288 693 KAGHGGGKPTTKQFPLTIPVIYFYLT 718 (1012)
Q Consensus 693 ~~gHg~~~~~~~~~~~~~~~~~fl~~ 718 (1012)
++-|+....... +..-+.++.|+.+
T Consensus 842 ~ERHsiR~~es~-~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 842 NERHSIRNPESG-IYYEARLLHFLQE 866 (867)
T ss_pred ccccccCCCccc-hhHHHHHHHHHhh
Confidence 999998776543 3444567778764
|
|
| >KOG2237|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-26 Score=253.04 Aligned_cols=110 Identities=42% Similarity=0.761 Sum_probs=100.6
Q ss_pred ccccccceEE-eeccCCCCcEEEEeeCCCCCCCCCCcceeEEEeeec--CCcCCCCcEEEEEEEeCCCCceeceEEEEec
Q psy1288 888 EFIRSVTTIR-TFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKV--PDFDPSLFETKQVFYPSKDGTKIPMFILSRK 964 (1012)
Q Consensus 888 ~~~~~~~~~~-~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~~~~dg~~vp~~~~~~~ 964 (1012)
++. .+++| +|+||++|+++|+||++++. -+..++++..+ ||||+++|+++|+|+.|+|||+|||||||||
T Consensus 390 ~~~--~~~~~f~~sS~l~P~~iy~yDl~~~~-----~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk 462 (712)
T KOG2237|consen 390 DFK--SSTIRFQFSSFLTPGSIYDYDLANGK-----PEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKK 462 (712)
T ss_pred CCC--CceEEEEEeccCCCCeEEEeeccCCC-----CCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEec
Confidence 555 88899 99999999999999999862 25678888877 8999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEeccccCCCCCCCccccceecccccCccc
Q psy1288 965 GAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGKE 1005 (1012)
Q Consensus 965 ~~~~~~~~p~~l~gyg~y~~~~~p~f~~~~~~l~~~~~~~~ 1005 (1012)
+.+++|+.|||||||||||||++|+|+++|||||| +..++
T Consensus 463 ~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld-~G~Vl 502 (712)
T KOG2237|consen 463 DIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLD-RGWVL 502 (712)
T ss_pred hhhhcCCCceEEEEecccceeeccccccceeEEEe-cceEE
Confidence 99999999999999999999999999999999999 55443
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=231.66 Aligned_cols=208 Identities=29% Similarity=0.443 Sum_probs=161.5
Q ss_pred CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHH
Q psy1288 449 GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAA 528 (1012)
Q Consensus 449 ~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 528 (1012)
.|+ ...++|+++||+|+.+|+||++++|..|...+....+...++|+.+++++++++..+|++||+|+|+|+||++++.
T Consensus 2 ~f~-~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~ 80 (213)
T PF00326_consen 2 SFN-WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALL 80 (213)
T ss_dssp --S-HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHH
T ss_pred eee-HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccch
Confidence 466 3468888899999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccccccc
Q psy1288 529 CINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGY 608 (1012)
Q Consensus 529 ~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~ 608 (1012)
++.++|++|+++++.+| ++|+..+. . ..+. ...
T Consensus 81 ~~~~~~~~f~a~v~~~g---~~d~~~~~----------------------~---------------~~~~-------~~~ 113 (213)
T PF00326_consen 81 AATQHPDRFKAAVAGAG---VSDLFSYY----------------------G---------------TTDI-------YTK 113 (213)
T ss_dssp HHHHTCCGSSEEEEESE----SSTTCSB----------------------H---------------HTCC-------HHH
T ss_pred hhcccceeeeeeeccce---ecchhccc----------------------c---------------cccc-------ccc
Confidence 99989999999999999 44422111 0 0000 000
Q ss_pred ccccccCCCC-ChHHHHHHHcCCcccCCCCCCcccC--CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCc
Q psy1288 609 FWESDYGSPA-NSSQFEYLLGYSPLHNIQGPDELKG--KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNP 685 (1012)
Q Consensus 609 ~~~~~~g~p~-~~~~~~~~~~~sP~~~~~~p~~~~~--~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~ 685 (1012)
.+..+++.+. ..+. +...+|+..+. + .+.| +|++||.+|.+||+.++.+++++|+++ +.+
T Consensus 114 ~~~~~~~~~~~~~~~---~~~~s~~~~~~------~~~~~~P-~li~hG~~D~~Vp~~~s~~~~~~L~~~-------g~~ 176 (213)
T PF00326_consen 114 AEYLEYGDPWDNPEF---YRELSPISPAD------NVQIKPP-VLIIHGENDPRVPPSQSLRLYNALRKA-------GKP 176 (213)
T ss_dssp GHHHHHSSTTTSHHH---HHHHHHGGGGG------GCGGGSE-EEEEEETTBSSSTTHHHHHHHHHHHHT-------TSS
T ss_pred ccccccCccchhhhh---hhhhccccccc------cccCCCC-EEEEccCCCCccCHHHHHHHHHHHHhc-------CCC
Confidence 1123455553 3333 44445555544 2 4455 999999999999999999999999998 999
Q ss_pred EEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 686 LLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 686 ~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
++++++|+++|++....... .....+++|++++++.
T Consensus 177 ~~~~~~p~~gH~~~~~~~~~-~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 177 VELLIFPGEGHGFGNPENRR-DWYERILDFFDKYLKK 212 (213)
T ss_dssp EEEEEETT-SSSTTSHHHHH-HHHHHHHHHHHHHTT-
T ss_pred EEEEEcCcCCCCCCCchhHH-HHHHHHHHHHHHHcCC
Confidence 99999999999998776554 7788899999999864
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=223.19 Aligned_cols=164 Identities=35% Similarity=0.580 Sum_probs=137.0
Q ss_pred EEEEEeCCCCCCCCCccccc---------hhhhhHHHHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeecccc
Q psy1288 686 LLIRIETKAGHGGGKPTTKQ---------FPLTIPVIYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTD 754 (1012)
Q Consensus 686 ~~l~~~p~~gHg~~~~~~~~---------~~~~~~~~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t 754 (1012)
+-+..|-+||-.||...+++ .++...+.+.|.+. ++..+.+++ |||+| +.-..+++|
T Consensus 452 ~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~r-----gitspe~lgi~GgSNG-------GLLvg~alT 519 (648)
T COG1505 452 VFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKR-----GITSPEKLGIQGGSNG-------GLLVGAALT 519 (648)
T ss_pred eEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHh-----CCCCHHHhhhccCCCC-------ceEEEeeec
Confidence 34445667777777654433 34444444444443 555555665 99999 666669999
Q ss_pred ccccchhh-----hcccccCCCCCCCCCCCcccCCCCCChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCC
Q psy1288 755 QKDDILIA-----EVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRV 829 (1012)
Q Consensus 755 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv 829 (1012)
|||+.|-| |++||++|+..+.|.+|..|||+|++|+++++|.++||++|++ +|+.|||+||.+|.+|.||
T Consensus 520 QrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~-----~g~kYP~~LITTs~~DDRV 594 (648)
T COG1505 520 QRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLK-----PGQKYPPTLITTSLHDDRV 594 (648)
T ss_pred cChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcCchhcCC-----ccccCCCeEEEcccccccc
Confidence 99999965 8999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred CCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCchh
Q psy1288 830 SPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873 (1012)
Q Consensus 830 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 873 (1012)
+|+||.+|+++||+.|. |+.|+...+.||+.+++..+
T Consensus 595 HPaHarKfaa~L~e~~~-------pv~~~e~t~gGH~g~~~~~~ 631 (648)
T COG1505 595 HPAHARKFAAKLQEVGA-------PVLLREETKGGHGGAAPTAE 631 (648)
T ss_pred cchHHHHHHHHHHhcCC-------ceEEEeecCCcccCCCChHH
Confidence 99999999999999987 99999999999999987443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-16 Score=178.34 Aligned_cols=261 Identities=12% Similarity=0.084 Sum_probs=169.8
Q ss_pred HHHHHhhcccCCCCCCCeeeCCEEEEEEEcCCC----CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcE
Q psy1288 95 VKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQ----NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKT 170 (1012)
Q Consensus 95 l~~~~~~~~~~~~~s~p~~dG~~~yy~~~~~~~----~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~ 170 (1012)
+..++...+...-.+.|-.-+.+++|+....+. ....||+++.++++.++||.. ......|+|||||+.
T Consensus 126 ~~h~~~D~~~~~~tg~~g~~~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~-------~~~~~sP~wSPDG~~ 198 (428)
T PRK01029 126 KIHEAADTIHYALTGVPGISSGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQE-------HSLSITPTWMHIGSG 198 (428)
T ss_pred HHHHHHHHHHHHHcCCCccccCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccC-------CCCcccceEccCCCc
Confidence 334444444333334443448999999875432 256999999999989999873 234568999999988
Q ss_pred --EEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCC-cc-----cCC---CCCceEE
Q psy1288 171 --LAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSK-SK-----KHS---KKNRSSA 239 (1012)
Q Consensus 171 --iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~-g~-----~~~---~~~~~l~ 239 (1012)
++|+..+.|. .+||++++++|+.++++........++|||||+.|+|+....... .. .+. +...+++
T Consensus 199 ~~~~y~S~~~g~--~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 199 FPYLYVSYKLGV--PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred eEEEEEEccCCC--ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee
Confidence 5567777664 599999999999877665444446799999999999997532100 00 000 0001111
Q ss_pred EEeeccccce-eeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCc
Q psy1288 240 YHLTVNVAPI-TSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHV 318 (1012)
Q Consensus 240 ~~~~~~~~~i-~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g 318 (1012)
. ...++ ..+.|+|||++|+|.++++. ..+||.++++.... ..+.+.... .........++++.|++....++
T Consensus 277 ~----~~~~~~~~p~wSPDG~~Laf~s~~~g-~~~ly~~~~~~~g~-~~~~lt~~~-~~~~~p~wSPDG~~Laf~~~~~g 349 (428)
T PRK01029 277 N----EAFGTQGNPSFSPDGTRLVFVSNKDG-RPRIYIMQIDPEGQ-SPRLLTKKY-RNSSCPAWSPDGKKIAFCSVIKG 349 (428)
T ss_pred c----CCCCCcCCeEECCCCCEEEEEECCCC-CceEEEEECccccc-ceEEeccCC-CCccceeECCCCCEEEEEEcCCC
Confidence 0 00111 24569999999999997653 45799988753211 123343332 22222233456678888877777
Q ss_pred eEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 319 KNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 319 ~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+|+++++++|+. +.++.....+..+.|+|||+.|+|..+.. ....||.+|+
T Consensus 350 ~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl 402 (428)
T PRK01029 350 VRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISL 402 (428)
T ss_pred CcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEEC
Confidence 78999999977765 44554333455688999999999887643 3468999999
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-18 Score=182.91 Aligned_cols=183 Identities=22% Similarity=0.254 Sum_probs=126.5
Q ss_pred HHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc------hhhhhHHHHHHHHhCCCCCCCCCCCCCc--cCCccc
Q psy1288 668 FAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ------FPLTIPVIYFYLTSGPVLQRYPETPNKA--DGSENV 739 (1012)
Q Consensus 668 ~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~------~~~~~~~~~fl~~~l~~~~~~~d~~~~~--GgS~g~ 739 (1012)
+..++.+. .+++++.++.+++.|++..+... ..+..|+++.++..... ...|+.+++ |+|+|
T Consensus 5 ~~~~~la~-------~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--~~iD~~ri~i~G~S~G- 74 (213)
T PF00326_consen 5 WNAQLLAS-------QGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQ--YYIDPDRIGIMGHSYG- 74 (213)
T ss_dssp HHHHHHHT-------TT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHT--TSEEEEEEEEEEETHH-
T ss_pred HHHHHHHh-------CCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhcc--ccccceeEEEEccccc-
Confidence 45566666 88999999999999987654431 23344444444443333 345666776 99999
Q ss_pred cccCccceeeeccccccccchhh-----hcccccCCCCCCCC--CCCcccCCCC-CChhhhhHhHcCCCCCCCCCCCCCC
Q psy1288 740 RNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIG--YFWESDYGSP-ANSSQFEYLLGYSPLHNIQGPNELK 811 (1012)
Q Consensus 740 ~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~g~~-~~~~~~~~~~~~Sp~~~v~~~~~~~ 811 (1012)
++.++++++++|++|.| |++|+..+...... ..+..++|.+ ++++.++.+++++|+.++.
T Consensus 75 ------G~~a~~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~------ 142 (213)
T PF00326_consen 75 ------GYLALLAATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQ------ 142 (213)
T ss_dssp ------HHHHHHHHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG------
T ss_pred ------ccccchhhcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhcccccccccc------
Confidence 77776666666777655 89999888765433 1133456777 4444455555555554410
Q ss_pred CCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCchhhhhhhhhc
Q psy1288 812 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQLCVRYMM 881 (1012)
Q Consensus 812 ~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 881 (1012)
+++|+||+||++|.+||+.|+.+|+++|+++|+ |++++++|++||++.++.++......++
T Consensus 143 --~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~-------~~~~~~~p~~gH~~~~~~~~~~~~~~~~ 203 (213)
T PF00326_consen 143 --IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGK-------PVELLIFPGEGHGFGNPENRRDWYERIL 203 (213)
T ss_dssp --GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTS-------SEEEEEETT-SSSTTSHHHHHHHHHHHH
T ss_pred --CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCC-------CEEEEEcCcCCCCCCCchhHHHHHHHHH
Confidence 559999999999999999999999999999988 9999999999999998877776555443
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >KOG2100|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-14 Score=174.58 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=130.9
Q ss_pred CCCCCcEEEEeeCCCCCCCh-HHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc------hhhhhHHHHH
Q psy1288 643 GKQYPATLLMTADHDDRVSP-VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ------FPLTIPVIYF 715 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~-~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~------~~~~~~~~~f 715 (1012)
.++||.++.+||+.+.+... .....|...+... .+.+++.++.+|+-++|..+... ..+..|...-
T Consensus 523 ~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~-------~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~ 595 (755)
T KOG2100|consen 523 SKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSS-------RGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEA 595 (755)
T ss_pred CCCCCEEEEecCCCCcceeeeeEEecHHHHhhcc-------CCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHH
Confidence 46999999999997633222 2234455555444 78899999999999988764322 1344444444
Q ss_pred HHHhCCCCCCCCCCCCCc--cCCcc------ccccCc-cceeeeccccccccchhhhcccccCCCCCCCCCCCcccC-CC
Q psy1288 716 YLTSGPVLQRYPETPNKA--DGSEN------VRNQDQ-KLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDY-GS 785 (1012)
Q Consensus 716 l~~~l~~~~~~~d~~~~~--GgS~g------~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~ 785 (1012)
+...+.. .++|+.+++ |+||| .+..++ +.|+|.++ ++||+||. ++..+.. ++| |.
T Consensus 596 ~~~~~~~--~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgva--------vaPVtd~~-~yds~~t----erymg~ 660 (755)
T KOG2100|consen 596 VKKVLKL--PFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVA--------VAPVTDWL-YYDSTYT----ERYMGL 660 (755)
T ss_pred HHHHHhc--ccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEE--------ecceeeee-eeccccc----HhhcCC
Confidence 4444444 377888888 99999 112221 44555444 55999998 6554332 344 66
Q ss_pred CCChhhhhHhHcCCCCCCCCCCCCCCCCCCCce-EEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q psy1288 786 PANSSQFEYLLGYSPLHNIQGPNELKGKQYPAT-LLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAG 864 (1012)
Q Consensus 786 ~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~-l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 864 (1012)
|..... .+.+.+|..++. ++++|. |+|||+.|.+|+..||.+++.+||.+|| |+.+++||+|.
T Consensus 661 p~~~~~--~y~e~~~~~~~~-------~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv-------~~~~~vypde~ 724 (755)
T KOG2100|consen 661 PSENDK--GYEESSVSSPAN-------NIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGV-------PFRLLVYPDEN 724 (755)
T ss_pred Cccccc--hhhhccccchhh-------hhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCC-------ceEEEEeCCCC
Confidence 643222 134445555555 555777 9999999999999999999999999999 99999999999
Q ss_pred CCCCCCc
Q psy1288 865 HGGGKPT 871 (1012)
Q Consensus 865 H~~~~~~ 871 (1012)
||++++.
T Consensus 725 H~is~~~ 731 (755)
T KOG2100|consen 725 HGISYVE 731 (755)
T ss_pred ccccccc
Confidence 9999864
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-15 Score=171.49 Aligned_cols=235 Identities=12% Similarity=0.070 Sum_probs=162.6
Q ss_pred eCCEEEEEEEcCCCC--eeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 114 QGDHYFFFHNTGLQN--HSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 114 dG~~~yy~~~~~~~~--~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
-..+++|+...++.+ ...||+.+..+...++|+. +...+..++|||||++|+|+....|. .+||++|++
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~-------~~~~v~~p~wSpDG~~lay~s~~~g~--~~i~~~dl~ 234 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTD-------GSSLVLTPRFSPNRQEITYMSYANGR--PRVYLLDLE 234 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEec-------CCCCeEeeEECCCCCEEEEEEecCCC--CEEEEEECC
Confidence 456899998765422 5799999988888888886 33357789999999999999877664 599999999
Q ss_pred CCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc--------ccc-eeeeeeecCCCEEE
Q psy1288 192 TGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN--------VAP-ITSQYITNEGPQFV 262 (1012)
Q Consensus 192 tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~--------~~~-i~~~~~s~dg~~l~ 262 (1012)
+|+.++++........++|||||+.|+|+..... +..++.....+ ... ...+.|+|||++|+
T Consensus 235 ~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~ 305 (435)
T PRK05137 235 TGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG---------NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIV 305 (435)
T ss_pred CCcEEEeecCCCcccCcEECCCCCEEEEEEecCC---------CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEE
Confidence 9988766543333467999999999999864321 11222211100 011 12356999999999
Q ss_pred EEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceE
Q psy1288 263 FKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGT 342 (1012)
Q Consensus 263 ~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~ 342 (1012)
|.++++. ..+||.+|+++++ .+.++... .........++++.|++.....+..+|++++++++. .+.++.. ..
T Consensus 306 f~s~~~g-~~~Iy~~d~~g~~---~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~-~~ 378 (435)
T PRK05137 306 FESDRSG-SPQLYVMNADGSN---PRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSG-FL 378 (435)
T ss_pred EEECCCC-CCeEEEEECCCCC---eEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCC-CC
Confidence 9997654 4689999987654 35555432 222222233566788877766666799999985443 3455443 23
Q ss_pred EEeecccccCcEEEEEecCCCCC--cEEEEEeC
Q psy1288 343 IVGFSGKKKYSEIFYSFMSFLQP--TIIFHCNI 373 (1012)
Q Consensus 343 v~~~~~spdg~~l~~~~ss~~~p--~~l~~~d~ 373 (1012)
+..++|+|||+.|+|..+..... ..||.+|+
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 55788999999999988754442 57999999
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-14 Score=163.88 Aligned_cols=228 Identities=9% Similarity=-0.007 Sum_probs=154.9
Q ss_pred EEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcE-EEEEEeCCCCceEEEEEEECCCCce
Q psy1288 117 HYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKT-LAYCLSSSGSDWTSMHFKDVATGKE 195 (1012)
Q Consensus 117 ~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~-iAy~~~~~G~~~~~L~v~dl~tg~~ 195 (1012)
+++|+....+.....||+++.++...++++. +. ....++|||||++ ++|+...++. .+||++|+++|+.
T Consensus 156 r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~-------~~-~~~~p~wSpDG~~~i~y~s~~~~~--~~Iyv~dl~tg~~ 225 (419)
T PRK04043 156 RKVVFSKYTGPKKSNIVLADYTLTYQKVIVK-------GG-LNIFPKWANKEQTAFYYTSYGERK--PTLYKYNLYTGKK 225 (419)
T ss_pred eEEEEEEccCCCcceEEEECCCCCceeEEcc-------CC-CeEeEEECCCCCcEEEEEEccCCC--CEEEEEECCCCcE
Confidence 4444444322246899999998888887776 22 4568999999997 6666554433 4999999999998
Q ss_pred eceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc--------ccc-eeeeeeecCCCEEEEEEC
Q psy1288 196 YPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN--------VAP-ITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 196 ~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~--------~~~-i~~~~~s~dg~~l~~~tn 266 (1012)
++++........+.|||||+.|+|+..... +.+++.....+ ... ...+.|+|||++|+|.++
T Consensus 226 ~~lt~~~g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 226 EKIASSQGMLVVSDVSKDGSKLLLTMAPKG---------QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred EEEecCCCcEEeeEECCCCCEEEEEEccCC---------CcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEEC
Confidence 887654443467899999999999875421 12232222100 011 113469999999999998
Q ss_pred CCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcC------ceEEEEEEecCCCceeeeecCCc
Q psy1288 267 KDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHH------VKNVMHLHDLASGKHLYTFPLDV 340 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~l~~~dl~~G~~~~~l~~~~ 340 (1012)
+.. ..+||.+|+++++ .++++..... . ....++++.+++..... +..+|+++++++|+. +.|+..
T Consensus 297 r~g-~~~Iy~~dl~~g~---~~rlt~~g~~-~--~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~- 367 (419)
T PRK04043 297 RLG-YPNIFMKKLNSGS---VEQVVFHGKN-N--SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN- 367 (419)
T ss_pred CCC-CceEEEEECCCCC---eEeCccCCCc-C--ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-
Confidence 753 5789999998776 3456544322 1 23345767887776654 336899999977764 456543
Q ss_pred eEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 341 GTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 341 ~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+....++|+|||+.|+|.... ..-..|+.+++
T Consensus 368 ~~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l 399 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFIKYL-GNQSALGIIRL 399 (419)
T ss_pred CCcCCeEECCCCCEEEEEEcc-CCcEEEEEEec
Confidence 223357899999999998765 34457999998
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=170.83 Aligned_cols=214 Identities=11% Similarity=0.113 Sum_probs=149.3
Q ss_pred CCCeeeCCE-EEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEE
Q psy1288 109 SSPQRQGDH-YFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHF 187 (1012)
Q Consensus 109 s~p~~dG~~-~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v 187 (1012)
+.++|||++ +||++.++ ..++||+.+..+++.++|++.. .....+.|||||++|+|+.+..|+ .+||+
T Consensus 193 p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt~~~-------g~~~~~~~SPDG~~la~~~~~~g~--~~Iy~ 261 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIASSQ-------GMLVVSDVSKDGSKLLLTMAPKGQ--PDIYL 261 (419)
T ss_pred EEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEecCC-------CcEEeeEECCCCCEEEEEEccCCC--cEEEE
Confidence 455799996 88877764 2469999999889999998732 234568899999999999988764 59999
Q ss_pred EECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc-------cceeeeeeecCCCE
Q psy1288 188 KDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV-------APITSQYITNEGPQ 260 (1012)
Q Consensus 188 ~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~-------~~i~~~~~s~dg~~ 260 (1012)
+|+++|+.++++........+.|||||++|+|++++.. ..+++....... .+.....|||||+.
T Consensus 262 ~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g---------~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~ 332 (419)
T PRK04043 262 YDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG---------YPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNY 332 (419)
T ss_pred EECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC---------CceEEEEECCCCCeEeCccCCCcCceECCCCCE
Confidence 99999998887765543467899999999999986532 112222211000 01112369999999
Q ss_pred EEEEECCCC-----CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeee
Q psy1288 261 FVFKTNKDA-----PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYT 335 (1012)
Q Consensus 261 l~~~tn~~~-----~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~ 335 (1012)
|++..+... ..++|+.+++++++ ++.|+...... .....++|+.+++.....+...|+++++ +|.....
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~~~~~--~p~~SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~ 406 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTANGVNQ--FPRFSSDGGSIMFIKYLGNQSALGIIRL-NYNKSFL 406 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCCCCcC--CeEECCCCCEEEEEEccCCcEEEEEEec-CCCeeEE
Confidence 999987542 23799999998776 56666542211 1223456678888887777889999999 5655566
Q ss_pred ecCCceEEEeecc
Q psy1288 336 FPLDVGTIVGFSG 348 (1012)
Q Consensus 336 l~~~~~~v~~~~~ 348 (1012)
++...+.+..++|
T Consensus 407 l~~~~g~~~~p~W 419 (419)
T PRK04043 407 FPLKVGKIQSIDW 419 (419)
T ss_pred eecCCCccCCCCC
Confidence 6655555544443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-14 Score=164.89 Aligned_cols=233 Identities=12% Similarity=0.047 Sum_probs=159.8
Q ss_pred CCEEEEEEEcC-CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy1288 115 GDHYFFFHNTG-LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATG 193 (1012)
Q Consensus 115 G~~~yy~~~~~-~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg 193 (1012)
..+++|+.... +.....||+++..+...++++. +...+..++|||||++|||+....|. .+||++|+++|
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~-------~~~~~~~p~wSPDG~~la~~s~~~g~--~~i~i~dl~~G 233 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-------SPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLANG 233 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeec-------CCCceeeeEEcCCCCEEEEEEecCCC--cEEEEEECCCC
Confidence 47888888743 3346799999998888888877 33457889999999999999865553 58999999999
Q ss_pred ceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---------ccceeeeeeecCCCEEEEE
Q psy1288 194 KEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN---------VAPITSQYITNEGPQFVFK 264 (1012)
Q Consensus 194 ~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~---------~~~i~~~~~s~dg~~l~~~ 264 (1012)
+.++++........+.|||||+.|+|+..... ...++...... ......+.|+|||++|+|.
T Consensus 234 ~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g---------~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~ 304 (429)
T PRK03629 234 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYT 304 (429)
T ss_pred CeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---------CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEE
Confidence 87665533333467999999999999864311 11222211100 0122345699999999999
Q ss_pred ECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEE
Q psy1288 265 TNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIV 344 (1012)
Q Consensus 265 tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~ 344 (1012)
+++.. ..+||.+++++++ .+.+.... .........++++.+++....++..+|+++++++|+. +.++.. ....
T Consensus 305 s~~~g-~~~Iy~~d~~~g~---~~~lt~~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~ 377 (429)
T PRK03629 305 SDQAG-RPQVYKVNINGGA---PQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDE 377 (429)
T ss_pred eCCCC-CceEEEEECCCCC---eEEeecCC-CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCC
Confidence 98653 4689999998765 34454332 1221222335667888877777778899999977754 455533 2233
Q ss_pred eecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 345 GFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 345 ~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++|+|||+.|+|...... ...|+.+++
T Consensus 378 ~p~~SpDG~~i~~~s~~~~-~~~l~~~~~ 405 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGM-GSVLNLVST 405 (429)
T ss_pred CceECCCCCEEEEEEcCCC-ceEEEEEEC
Confidence 6789999999998876432 356888888
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=167.75 Aligned_cols=270 Identities=13% Similarity=0.039 Sum_probs=187.7
Q ss_pred hhhchHhhhccCCChHHHHHHHhhcccCCCCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCce
Q psy1288 78 ENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTV 157 (1012)
Q Consensus 78 qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~ 157 (1012)
|+.++.+++...+....+..++...+.+...+.|...+.+++|++..+++++..||+++..++..++|++.+ .
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-------~ 190 (417)
T TIGR02800 118 LQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSR-------E 190 (417)
T ss_pred EEeeeeeEEcCHHHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCC-------C
Confidence 566777777666777788888888877777778888899999998876566789999998878888888844 2
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCce
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRS 237 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~ 237 (1012)
.+..+.|||||++|||+....+. .+|+++|+++|+.............++|+|||+.|+|+.... ....
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~--~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~---------~~~~ 259 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGK--PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD---------GNPD 259 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC---------CCcc
Confidence 35678999999999999876553 589999999997655443332335689999999999986431 1223
Q ss_pred EEEEeeccc--------cc-eeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCC
Q psy1288 238 SAYHLTVNV--------AP-ITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVAND 308 (1012)
Q Consensus 238 l~~~~~~~~--------~~-i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (1012)
++.+...+. .. ...+.|++||++|+|.+++.. ..+||.+++.+++ ++.+.... ..........+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g-~~~iy~~d~~~~~---~~~l~~~~-~~~~~~~~spdg~ 334 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG-SPQIYMMDADGGE---VRRLTFRG-GYNASPSWSPDGD 334 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC-CceEEEEECCCCC---EEEeecCC-CCccCeEECCCCC
Confidence 333332110 11 113468999999999988654 4589999987655 45555433 2222222334557
Q ss_pred EEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 309 KLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+++.....+..+|+++++.++.. +.++... ....+.|+||++.|++....... ..++.++.
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~ 396 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDESPSFAPNGRMILYATTRGGR-GVLGLVST 396 (417)
T ss_pred EEEEEEccCCceEEEEEeCCCCCe-EEccCCC-CCCCceECCCCCEEEEEEeCCCc-EEEEEEEC
Confidence 777777766678999999966543 4444332 23356789999999988775433 56777776
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=159.31 Aligned_cols=234 Identities=13% Similarity=0.044 Sum_probs=158.9
Q ss_pred eCCEEEEEEEcCC-CCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 114 QGDHYFFFHNTGL-QNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 114 dG~~~yy~~~~~~-~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
-..+++|+....+ .....||+.+..+...++|+. +...+..++|||||++|+|+....| ..+||++|+++
T Consensus 181 f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~-------~~~~~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~t 251 (448)
T PRK04792 181 FLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLR-------SPEPLMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYT 251 (448)
T ss_pred ccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeec-------CCCcccCceECCCCCEEEEEEecCC--CcEEEEEECCC
Confidence 3457778776443 235789999988877788887 3345778999999999999988755 35899999999
Q ss_pred CceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc---------cceeeeeeecCCCEEEE
Q psy1288 193 GKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV---------APITSQYITNEGPQFVF 263 (1012)
Q Consensus 193 g~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~---------~~i~~~~~s~dg~~l~~ 263 (1012)
|+..+++........++|||||+.|+|+..... ..+++....... .....+.|+|||++|+|
T Consensus 252 g~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---------~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f 322 (448)
T PRK04792 252 QVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---------QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIF 322 (448)
T ss_pred CCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---------CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEE
Confidence 987665533333357999999999999864311 123332221100 11124569999999999
Q ss_pred EECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEE
Q psy1288 264 KTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTI 343 (1012)
Q Consensus 264 ~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v 343 (1012)
.++++. ..+||.+++++++ ++.|+..... ........+++.+++....++..+|+++++++|+. +.++.... .
T Consensus 323 ~s~~~g-~~~Iy~~dl~~g~---~~~Lt~~g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~~-d 395 (448)
T PRK04792 323 TSERGG-KPQIYRVNLASGK---VSRLTFEGEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTRL-D 395 (448)
T ss_pred EECCCC-CceEEEEECCCCC---EEEEecCCCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCCC-C
Confidence 987654 4689999997765 4555533322 12222345667888877767778899999976654 44543311 2
Q ss_pred EeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 344 VGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 344 ~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..++|+|||+.|+|..... ....||.++.
T Consensus 396 ~~ps~spdG~~I~~~~~~~-g~~~l~~~~~ 424 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQ-GKQVLAAVSI 424 (448)
T ss_pred CCceECCCCCEEEEEEecC-CceEEEEEEC
Confidence 2467999999999887643 3356888887
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-14 Score=165.86 Aligned_cols=215 Identities=17% Similarity=0.176 Sum_probs=150.6
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|.+.+. +...||+.+..+++.+++++.. .....+.|||||++|+|+.+.+|. .+||++
T Consensus 223 p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~-------g~~~~~~wSPDG~~La~~~~~~g~--~~Iy~~ 291 (448)
T PRK04792 223 PAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFP-------GINGAPRFSPDGKKLALVLSKDGQ--PEIYVV 291 (448)
T ss_pred ceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCC-------CCcCCeeECCCCCEEEEEEeCCCC--eEEEEE
Confidence 45579999999998764 3578999999888888877632 123478999999999999887764 589999
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---------ccceeeeeeecCCC
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN---------VAPITSQYITNEGP 259 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~---------~~~i~~~~~s~dg~ 259 (1012)
|+++++.++++........++|||||+.|+|++.+.. ..+++...... ......+.|+|||+
T Consensus 292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g---------~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~ 362 (448)
T PRK04792 292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG---------KPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGR 362 (448)
T ss_pred ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC---------CceEEEEECCCCCEEEEecCCCCCcCeeECCCCC
Confidence 9999998776655444577999999999999975421 11222211100 00111346999999
Q ss_pred EEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD 339 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~ 339 (1012)
.|+|....+ ..++|+.+|+++++ .+.+.... .. .......+++.|++....++...|++++. +|+..+.++.+
T Consensus 363 ~l~~~~~~~-g~~~I~~~dl~~g~---~~~lt~~~-~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~ 435 (448)
T PRK04792 363 SMIMVNRTN-GKFNIARQDLETGA---MQVLTSTR-LD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG 435 (448)
T ss_pred EEEEEEecC-CceEEEEEECCCCC---eEEccCCC-CC-CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC
Confidence 999987653 46789999998765 33443221 11 11123456678888888888889999998 67666677666
Q ss_pred ceEEEeecccc
Q psy1288 340 VGTIVGFSGKK 350 (1012)
Q Consensus 340 ~~~v~~~~~sp 350 (1012)
.+.+..++|+|
T Consensus 436 ~g~~~~p~Wsp 446 (448)
T PRK04792 436 QGEVKSPAWSP 446 (448)
T ss_pred CCCcCCCccCC
Confidence 56666777876
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=154.42 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=142.5
Q ss_pred EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCC-CCCchhHHhhhh
Q psy1288 407 FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGG-GEYGERWHDGGR 485 (1012)
Q Consensus 407 ~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~-g~~g~~~~~~~~ 485 (1012)
.+.+.||.+|.+|+..|++. ...+.++|+.+||-.... .+...+..+|.++||.|+.+|.||+ |+.+..+.+...
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~---~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~ 88 (307)
T PRK13604 13 VICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM---DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTM 88 (307)
T ss_pred eEEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh---HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcc
Confidence 35678999999999999752 246678999999954432 2233456788889999999999876 655554432211
Q ss_pred cCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccc
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCK 565 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~ 565 (1012)
. ....|+.++++|+.++ +.++|+++|+|+||..+..++.. + ..+++|+.+| .+++.+++..
T Consensus 89 s----~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp---~~~l~d~l~~------- 149 (307)
T PRK13604 89 S----IGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINE-I-DLSFLITAVG---VVNLRDTLER------- 149 (307)
T ss_pred c----ccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCC---cccHHHHHHH-------
Confidence 1 1257999999999876 34689999999999997666654 2 3788999999 4432211100
Q ss_pred cCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCC-hHHHHHHHc------CCcccCCCCC
Q psy1288 566 NNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN-SSQFEYLLG------YSPLHNIQGP 638 (1012)
Q Consensus 566 ~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~-~~~~~~~~~------~sP~~~~~~p 638 (1012)
.+...+ ..+|+.. +.+.+.+. |..-. ...+..... .+|...++
T Consensus 150 ----------~~~~~~--~~~p~~~----lp~~~d~~------------g~~l~~~~f~~~~~~~~~~~~~s~i~~~~-- 199 (307)
T PRK13604 150 ----------ALGYDY--LSLPIDE----LPEDLDFE------------GHNLGSEVFVTDCFKHGWDTLDSTINKMK-- 199 (307)
T ss_pred ----------hhhccc--ccCcccc----cccccccc------------cccccHHHHHHHHHhcCccccccHHHHHh--
Confidence 000000 0001000 00000000 00000 011111111 22334344
Q ss_pred CcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCc
Q psy1288 639 DELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 701 (1012)
Q Consensus 639 ~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~ 701 (1012)
+.+.| +|+|||..|..|++.++.+++.++.. .+..++.+++++|.+.+.
T Consensus 200 ----~l~~P-vLiIHG~~D~lVp~~~s~~l~e~~~s---------~~kkl~~i~Ga~H~l~~~ 248 (307)
T PRK13604 200 ----GLDIP-FIAFTANNDSWVKQSEVIDLLDSIRS---------EQCKLYSLIGSSHDLGEN 248 (307)
T ss_pred ----hcCCC-EEEEEcCCCCccCHHHHHHHHHHhcc---------CCcEEEEeCCCccccCcc
Confidence 56778 99999999999999999999887542 367899999999998763
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-13 Score=158.27 Aligned_cols=230 Identities=15% Similarity=0.082 Sum_probs=155.8
Q ss_pred CEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCce
Q psy1288 116 DHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKE 195 (1012)
Q Consensus 116 ~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~ 195 (1012)
.+++|+...+ +...||..+..+...++++.. ...+..++|||||++|||+....+. .+||++|+++|+.
T Consensus 164 ~~iayv~~~~--~~~~L~~~D~dG~~~~~l~~~-------~~~v~~p~wSPDG~~la~~s~~~~~--~~I~~~dl~~g~~ 232 (427)
T PRK02889 164 TRIAYVIKTG--NRYQLQISDADGQNAQSALSS-------PEPIISPAWSPDGTKLAYVSFESKK--PVVYVHDLATGRR 232 (427)
T ss_pred cEEEEEEccC--CccEEEEECCCCCCceEeccC-------CCCcccceEcCCCCEEEEEEccCCC--cEEEEEECCCCCE
Confidence 6788887543 357899999877777777762 2346789999999999999876543 4899999999987
Q ss_pred eceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc--------ccc-eeeeeeecCCCEEEEEEC
Q psy1288 196 YPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN--------VAP-ITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 196 ~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~--------~~~-i~~~~~s~dg~~l~~~tn 266 (1012)
.+++........++|||||+.|+|+..... ...++.....+ ... ...+.|+|||++|+|.++
T Consensus 233 ~~l~~~~g~~~~~~~SPDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 233 RVVANFKGSNSAPAWSPDGRTLAVALSRDG---------NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEccCC---------CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEec
Confidence 766533333467999999999999764321 12222211100 011 123469999999999987
Q ss_pred CCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEee
Q psy1288 267 KDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGF 346 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~ 346 (1012)
++. ..+||.++++++. .+.+..+. .........++++.|++....++..+|+++++.+|+. +.++.. .....+
T Consensus 304 ~~g-~~~Iy~~~~~~g~---~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-~~lt~~-~~~~~p 376 (427)
T PRK02889 304 RGG-APQIYRMPASGGA---AQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-TALTDT-TRDESP 376 (427)
T ss_pred CCC-CcEEEEEECCCCc---eEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-EEccCC-CCccCc
Confidence 653 4689999987654 34454333 2122222345667888777666677899999977765 344433 223467
Q ss_pred cccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 347 SGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 347 ~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+|+|||+.|+|..+... -..|+.+++
T Consensus 377 ~~spdg~~l~~~~~~~g-~~~l~~~~~ 402 (427)
T PRK02889 377 SFAPNGRYILYATQQGG-RSVLAAVSS 402 (427)
T ss_pred eECCCCCEEEEEEecCC-CEEEEEEEC
Confidence 89999999999886543 356888888
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=165.10 Aligned_cols=215 Identities=16% Similarity=0.162 Sum_probs=149.7
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|++...+ ...||+.+..+++.++|++.. .....+.|||||++|+|+.+..|. .+||++
T Consensus 204 p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~~~~l~~~~-------~~~~~~~~SPDG~~La~~~~~~g~--~~I~~~ 272 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFP-------RHNGAPAFSPDGSKLAFALSKTGS--LNLYVM 272 (429)
T ss_pred eEEcCCCCEEEEEEecCC--CcEEEEEECCCCCeEEccCCC-------CCcCCeEECCCCCEEEEEEcCCCC--cEEEEE
Confidence 455799999999886543 478999998888888887632 124578999999999999887664 379999
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---------ccceeeeeeecCCC
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN---------VAPITSQYITNEGP 259 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~---------~~~i~~~~~s~dg~ 259 (1012)
|+++|+.++++........+.|||||+.|+|++.+.. ..+++.....+ ......+.|+|||+
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g---------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG---------RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC---------CceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 9999998777655545678999999999999986521 11222211100 01122356999999
Q ss_pred EEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD 339 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~ 339 (1012)
.|++....+. ...|+.+|+++++ ++.|.... .........|++.|++...+.+...|+++++ +|+..+.++..
T Consensus 344 ~Ia~~~~~~g-~~~I~~~dl~~g~---~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~ 416 (429)
T PRK03629 344 FMVMVSSNGG-QQHIAKQDLATGG---VQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPAT 416 (429)
T ss_pred EEEEEEccCC-CceEEEEECCCCC---eEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccC
Confidence 9999886543 5689999998765 44554322 1112223356677888877777788999999 56655666654
Q ss_pred ceEEEeecccc
Q psy1288 340 VGTIVGFSGKK 350 (1012)
Q Consensus 340 ~~~v~~~~~sp 350 (1012)
.+.+..++|+|
T Consensus 417 ~~~~~~p~Wsp 427 (429)
T PRK03629 417 DGQVKFPAWSP 427 (429)
T ss_pred CCCcCCcccCC
Confidence 55666777876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-14 Score=162.51 Aligned_cols=219 Identities=11% Similarity=0.029 Sum_probs=144.5
Q ss_pred CCCCeeeCCE--EEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEE
Q psy1288 108 YSSPQRQGDH--YFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSM 185 (1012)
Q Consensus 108 ~s~p~~dG~~--~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L 185 (1012)
.+.++|||++ ++|++.+. +.++||+++..+++.++|++.. .....++|||||++|||+.+..|.. +|
T Consensus 189 sP~wSPDG~~~~~~y~S~~~--g~~~I~~~~l~~g~~~~lt~~~-------g~~~~p~wSPDG~~Laf~s~~~g~~--di 257 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKL--GVPKIFLGSLENPAGKKILALQ-------GNQLMPTFSPRKKLLAFISDRYGNP--DL 257 (428)
T ss_pred cceEccCCCceEEEEEEccC--CCceEEEEECCCCCceEeecCC-------CCccceEECCCCCEEEEEECCCCCc--ce
Confidence 3456799987 66677765 3589999999999989998732 2345699999999999999877754 55
Q ss_pred EE--EECCC---Cceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEee--cc---------ccc
Q psy1288 186 HF--KDVAT---GKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT--VN---------VAP 248 (1012)
Q Consensus 186 ~v--~dl~t---g~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~--~~---------~~~ 248 (1012)
|+ +++++ |+.++++... .....++|||||+.|+|++.+.. ..+++.... .+ ...
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g---------~~~ly~~~~~~~g~~~~~lt~~~~~ 328 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG---------RPRIYIMQIDPEGQSPRLLTKKYRN 328 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---------CceEEEEECcccccceEEeccCCCC
Confidence 65 46664 4555555332 22367999999999999986421 112221110 00 012
Q ss_pred eeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecC
Q psy1288 249 ITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLA 328 (1012)
Q Consensus 249 i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~ 328 (1012)
...+.|||||++|+|.+..+. ..+|+.+|+++++ .+.|+.. +..........+++.|++....++...|++++++
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g~---~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATGR---DYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred ccceeECCCCCEEEEEEcCCC-CcEEEEEECCCCC---eEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 234579999999999987543 5789999998776 3445433 2222222223466788887777777899999996
Q ss_pred CCceeeeecCCceEEEeecccccC
Q psy1288 329 SGKHLYTFPLDVGTIVGFSGKKKY 352 (1012)
Q Consensus 329 ~G~~~~~l~~~~~~v~~~~~spdg 352 (1012)
+++. +.++...+.+..++|+|-.
T Consensus 404 ~g~~-~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 404 TKKT-RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCE-EEeecCCCcccCceecCCC
Confidence 6654 4455444555567787643
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-14 Score=152.59 Aligned_cols=231 Identities=18% Similarity=0.134 Sum_probs=140.1
Q ss_pred EEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCC-chhHHhhhhc--CCCcch
Q psy1288 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEY-GERWHDGGRL--LNKQNV 492 (1012)
Q Consensus 416 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~-g~~~~~~~~~--~~~~~~ 492 (1012)
+....+.|.+ ..+++.|+||++||..+... .|. .....|+++||.|+++|+||.|.. +..-...... ......
T Consensus 12 ~~~~~~~p~~-~~~~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK10566 12 IEVLHAFPAG-QRDTPLPTVFFYHGFTSSKL--VYS-YFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQN 87 (249)
T ss_pred cceEEEcCCC-CCCCCCCEEEEeCCCCcccc--hHH-HHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHH
Confidence 3345555653 22356799999999754432 233 245667778999999999997632 1100000000 000123
Q ss_pred HhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEc-cCCCccccCcceeeeecccccccCcccc
Q psy1288 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQ-VGNPEISDCGRWLIVHTMKDCKNNMFHF 571 (1012)
Q Consensus 493 ~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~-~~~~~i~d~~~~~~~~~~~~~~~~~~~~ 571 (1012)
.+|+.++++++.+...+++++|+++|+|+||++++.++.+.|++..+++.. .+ ... .+
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~---~~~------------------~~ 146 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSG---YFT------------------SL 146 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcH---HHH------------------HH
Confidence 567778888988888889999999999999999999988878754333322 22 000 00
Q ss_pred cccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCC-CCCcEE
Q psy1288 572 CDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGK-QYPATL 650 (1012)
Q Consensus 572 ~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~-~~P~vL 650 (1012)
... ..+. ... .. ........+....+..+++...+. ++ +.| +|
T Consensus 147 ~~~-~~~~------~~~--------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~P-~L 190 (249)
T PRK10566 147 ART-LFPP------LIP--------------------ET--AAQQAEFNNIVAPLAEWEVTHQLE------QLADRP-LL 190 (249)
T ss_pred HHH-hccc------ccc--------------------cc--cccHHHHHHHHHHHhhcChhhhhh------hcCCCC-EE
Confidence 000 0000 000 00 000000001112233344433333 33 577 99
Q ss_pred EEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCC--cEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 651 LMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTN--PLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 651 iihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~--~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
++||..|..|++.++.++.+++..+ +. .+++..+++++|++.. ..+.++++||.+++
T Consensus 191 ii~G~~D~~v~~~~~~~l~~~l~~~-------g~~~~~~~~~~~~~~H~~~~------~~~~~~~~fl~~~~ 249 (249)
T PRK10566 191 LWHGLADDVVPAAESLRLQQALRER-------GLDKNLTCLWEPGVRHRITP------EALDAGVAFFRQHL 249 (249)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHhc-------CCCcceEEEecCCCCCccCH------HHHHHHHHHHHhhC
Confidence 9999999999999999999999877 54 4889999999998742 45677889998764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-13 Score=157.77 Aligned_cols=235 Identities=14% Similarity=0.055 Sum_probs=158.9
Q ss_pred eeCCEEEEEEEcC--CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 113 RQGDHYFFFHNTG--LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 113 ~dG~~~yy~~~~~--~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.-+.+++|++..+ +.....||+.+..+...++|+. +...+..++|||||++|+|+....+ ..+||++|+
T Consensus 165 ~f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~-------~~~~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl 235 (433)
T PRK04922 165 AFWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILR-------SAEPILSPAWSPDGKKLAYVSFERG--RSAIYVQDL 235 (433)
T ss_pred cccceEEEEEEeCCCCCceEEEEEECCCCCCceEeec-------CCCccccccCCCCCCEEEEEecCCC--CcEEEEEEC
Confidence 4466789987643 2335789999987777788876 3345778999999999999976655 358999999
Q ss_pred CCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc--------cc-eeeeeeecCCCEE
Q psy1288 191 ATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV--------AP-ITSQYITNEGPQF 261 (1012)
Q Consensus 191 ~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~--------~~-i~~~~~s~dg~~l 261 (1012)
++|+..+++........++|||||+.|+|+..... +..++....... .. ...+.|+|||++|
T Consensus 236 ~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g---------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 236 ATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG---------NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred CCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---------CceEEEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence 99987665433333457899999999999864321 112222111000 11 1234699999999
Q ss_pred EEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCce
Q psy1288 262 VFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVG 341 (1012)
Q Consensus 262 ~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~ 341 (1012)
+|.+++.+ ..+||.+++++++ .+.++... ..........+++.+++....++..+|+++++.+|+. +.++...
T Consensus 307 ~f~sd~~g-~~~iy~~dl~~g~---~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~~Lt~~~- 379 (433)
T PRK04922 307 YFTSDRGG-RPQIYRVAASGGS---AERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-RTLTPGS- 379 (433)
T ss_pred EEEECCCC-CceEEEEECCCCC---eEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-EECCCCC-
Confidence 99998754 4689999987765 45555332 2221222345667888776666667899999976664 3554332
Q ss_pred EEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 342 TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 342 ~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....++|+|||+.|+|..+.. .-..||.+++
T Consensus 380 ~~~~p~~spdG~~i~~~s~~~-g~~~L~~~~~ 410 (433)
T PRK04922 380 LDESPSFAPNGSMVLYATREG-GRGVLAAVST 410 (433)
T ss_pred CCCCceECCCCCEEEEEEecC-CceEEEEEEC
Confidence 233568999999999887653 3357999998
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-14 Score=162.91 Aligned_cols=220 Identities=14% Similarity=0.158 Sum_probs=150.0
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|...+. +...||+.+..+++.+++++.. .....+.|||||++|+|+.+.+|. .+||++
T Consensus 201 p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~-------g~~~~~~~SPDG~~la~~~~~~g~--~~Iy~~ 269 (427)
T PRK02889 201 PAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFK-------GSNSAPAWSPDGRTLAVALSRDGN--SQIYTV 269 (427)
T ss_pred ceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCC-------CCccceEECCCCCEEEEEEccCCC--ceEEEE
Confidence 34569999999998754 3478999999888877776532 234579999999999999887764 589999
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc----cCCCCCceEEEEeeccccceeeeeeecCCCEEEEE
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK----KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFK 264 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~----~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~ 264 (1012)
|+++++.++++........+.|||||+.|+|++++...... .+.+...++.+.. .....+.|||||+.|++.
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYI 345 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC----CCcCceEECCCCCEEEEE
Confidence 99988877665544334678999999999998764211000 0011111111110 111234699999999998
Q ss_pred ECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEE
Q psy1288 265 TNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIV 344 (1012)
Q Consensus 265 tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~ 344 (1012)
++.+. .+.|+.+++.+++ .+.++..... .......+++.|++....++...|+++++ +|+....++.+.+.+.
T Consensus 346 s~~~g-~~~I~v~d~~~g~---~~~lt~~~~~--~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 346 SRVGG-AFKLYVQDLATGQ---VTALTDTTRD--ESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVR 418 (427)
T ss_pred EccCC-cEEEEEEECCCCC---eEEccCCCCc--cCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCC
Confidence 86543 4689999987765 3445433211 11222346678888888888899999999 5766666766667677
Q ss_pred eecccc
Q psy1288 345 GFSGKK 350 (1012)
Q Consensus 345 ~~~~sp 350 (1012)
.++|+|
T Consensus 419 ~p~wsp 424 (427)
T PRK02889 419 EPSWGP 424 (427)
T ss_pred CCccCC
Confidence 778876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-13 Score=156.77 Aligned_cols=235 Identities=11% Similarity=0.066 Sum_probs=157.1
Q ss_pred eeCCEEEEEEEcC--CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 113 RQGDHYFFFHNTG--LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 113 ~dG~~~yy~~~~~--~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
....+++|+.... +.+...||..+..++..++++.. ...+..++|||||++|||+....+ ..+||++|+
T Consensus 160 ~f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~-------~~~~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l 230 (430)
T PRK00178 160 AFSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQS-------REPILSPRWSPDGKRIAYVSFEQK--RPRIFVQNL 230 (430)
T ss_pred cceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecC-------CCceeeeeECCCCCEEEEEEcCCC--CCEEEEEEC
Confidence 3556788877543 23456899999887777777762 235678999999999999987655 348999999
Q ss_pred CCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc--------cc-ceeeeeeecCCCEE
Q psy1288 191 ATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN--------VA-PITSQYITNEGPQF 261 (1012)
Q Consensus 191 ~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~--------~~-~i~~~~~s~dg~~l 261 (1012)
++|+..+++........++|||||+.|+|+..... ...++.....+ .. ....+.|+|||++|
T Consensus 231 ~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g---------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 231 DTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG---------NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred CCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC---------CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEE
Confidence 99987665543333457999999999999864321 11222111100 01 11234699999999
Q ss_pred EEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCce
Q psy1288 262 VFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVG 341 (1012)
Q Consensus 262 ~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~ 341 (1012)
+|.++++. ..+||.+++.+++ ++.+...... ........+++.+++....++..+|+++++.+|+. +.++....
T Consensus 302 ~f~s~~~g-~~~iy~~d~~~g~---~~~lt~~~~~-~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~ 375 (430)
T PRK00178 302 YFTSDRGG-KPQIYKVNVNGGR---AERVTFVGNY-NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSL 375 (430)
T ss_pred EEEECCCC-CceEEEEECCCCC---EEEeecCCCC-ccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCC
Confidence 99987653 4689999987765 4555433211 11112234667888877766777899999977664 44553322
Q ss_pred EEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 342 TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 342 ~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...++|+|||+.++|+..... -..|+.+++
T Consensus 376 -~~~p~~spdg~~i~~~~~~~g-~~~l~~~~~ 405 (430)
T PRK00178 376 -DESPSVAPNGTMLIYATRQQG-RGVLMLVSI 405 (430)
T ss_pred -CCCceECCCCCEEEEEEecCC-ceEEEEEEC
Confidence 225689999999998876432 346899988
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-14 Score=163.21 Aligned_cols=214 Identities=15% Similarity=0.191 Sum_probs=149.6
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
.++|||++++|.+.+. +...||+.+..+++.++|+... .....+.|||||++|+|+.+..|. .+||++|
T Consensus 205 ~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~-------g~~~~~~~SpDG~~la~~~~~~g~--~~Iy~~d 273 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFE-------GLNGAPAWSPDGSKLAFVLSKDGN--PEIYVMD 273 (430)
T ss_pred eECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCC-------CCcCCeEECCCCCEEEEEEccCCC--ceEEEEE
Confidence 4569999999998764 3578999999888888876532 124579999999999999987764 5899999
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc---------cceeeeeeecCCCE
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV---------APITSQYITNEGPQ 260 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~---------~~i~~~~~s~dg~~ 260 (1012)
+++++.++++........+.|||||+.|+|++.+.. ..+++....... .....+.|+|||+.
T Consensus 274 ~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g---------~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 274 LASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG---------KPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKT 344 (430)
T ss_pred CCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC---------CceEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 999988776654444577999999999999975421 112222211000 11113469999999
Q ss_pred EEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCc
Q psy1288 261 FVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDV 340 (1012)
Q Consensus 261 l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~ 340 (1012)
|++....+. .++|+.+|+.+++ .+.|.... ... ......+++.+++....++..+|+++++ +|...+.++.+.
T Consensus 345 i~~~~~~~~-~~~l~~~dl~tg~---~~~lt~~~-~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~ 417 (430)
T PRK00178 345 LVMVHRQDG-NFHVAAQDLQRGS---VRILTDTS-LDE-SPSVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQ 417 (430)
T ss_pred EEEEEccCC-ceEEEEEECCCCC---EEEccCCC-CCC-CceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 999886543 6789999998765 34444322 211 1223346678888888888899999999 565555666555
Q ss_pred eEEEeecccc
Q psy1288 341 GTIVGFSGKK 350 (1012)
Q Consensus 341 ~~v~~~~~sp 350 (1012)
+.+..++|+|
T Consensus 418 g~~~~p~ws~ 427 (430)
T PRK00178 418 GEVREPSWSP 427 (430)
T ss_pred CCcCCCccCC
Confidence 6666677775
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-14 Score=153.41 Aligned_cols=247 Identities=13% Similarity=0.034 Sum_probs=146.5
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCC-----
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGE----- 475 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~----- 475 (1012)
..+.+.+.|+ -|..+++.++.|+. ...++.|+|+++||..+.............+++..|++|+.+|..+.|.
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~ 95 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGE 95 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCC
Confidence 3455566664 57789999999984 3456899999999976544322222333456677799999999764331
Q ss_pred -------CchhHHhhh-hcCCCcchHhH-HHHHH-HHHHHc-CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 476 -------YGERWHDGG-RLLNKQNVFDD-FQCAA-EYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 476 -------~g~~~~~~~-~~~~~~~~~~D-~~a~~-~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
++..+.... ...+....+.+ +...+ .++... ...++++++|+|+|+||++++.++.++|++|+++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~ 175 (283)
T PLN02442 96 ADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFA 175 (283)
T ss_pred ccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEEC
Confidence 111111100 00010001111 21212 222222 23688999999999999999999999999999999988
Q ss_pred CCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHH
Q psy1288 545 GNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFE 624 (1012)
Q Consensus 545 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~ 624 (1012)
| +.+ +..++. + ...+ ...+|.+. +.
T Consensus 176 ~---~~~----------------------~~~~~~-------~--------~~~~-----------~~~~g~~~--~~-- 200 (283)
T PLN02442 176 P---IAN----------------------PINCPW-------G--------QKAF-----------TNYLGSDK--AD-- 200 (283)
T ss_pred C---ccC----------------------cccCch-------h--------hHHH-----------HHHcCCCh--hh--
Confidence 8 222 110000 0 0000 01123221 11
Q ss_pred HHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChH-HHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc
Q psy1288 625 YLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPV-HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT 703 (1012)
Q Consensus 625 ~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~-~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~ 703 (1012)
+..++|...+... ...+.| +|++||..|..|+.. ++..++++++++ +.++.++++|+++|++.
T Consensus 201 -~~~~d~~~~~~~~---~~~~~p-vli~~G~~D~~v~~~~~s~~~~~~l~~~-------g~~~~~~~~pg~~H~~~---- 264 (283)
T PLN02442 201 -WEEYDATELVSKF---NDVSAT-ILIDQGEADKFLKEQLLPENFEEACKEA-------GAPVTLRLQPGYDHSYF---- 264 (283)
T ss_pred -HHHcChhhhhhhc---cccCCC-EEEEECCCCccccccccHHHHHHHHHHc-------CCCeEEEEeCCCCccHH----
Confidence 3334444322210 135566 999999999999874 578899999988 88999999999999864
Q ss_pred cchhhhhHHHHHHHHhC
Q psy1288 704 KQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l 720 (1012)
.....+.+.+.|..+++
T Consensus 265 ~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 265 FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 12233334445555443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=160.74 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=147.6
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|.+... +...||+.+..++..+++++.. + ....++|||||++|+|+.+..|. .+||++
T Consensus 209 p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~-----g--~~~~~~~SpDG~~l~~~~s~~g~--~~Iy~~ 277 (433)
T PRK04922 209 PAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFR-----G--INGAPSFSPDGRRLALTLSRDGN--PEIYVM 277 (433)
T ss_pred ccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCC-----C--CccCceECCCCCEEEEEEeCCCC--ceEEEE
Confidence 34569999999998754 3578999999888878877632 1 24578999999999999988774 489999
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---------ccceeeeeeecCCC
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN---------VAPITSQYITNEGP 259 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~---------~~~i~~~~~s~dg~ 259 (1012)
|+++|+.++++........++|||||+.|+|++++... .+++...... ......+.|||||+
T Consensus 278 d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~---------~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~ 348 (433)
T PRK04922 278 DLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR---------PQIYRVAASGGSAERLTFQGNYNARASVSPDGK 348 (433)
T ss_pred ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCC---------ceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 99999987766544334679999999999999865311 1222211100 01111346999999
Q ss_pred EEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD 339 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~ 339 (1012)
.|++.+.. ...+.|+.+++.+++ .+.|.... .. .......+++.+++.....+..+|+++++ +|...+.++.+
T Consensus 349 ~Ia~~~~~-~~~~~I~v~d~~~g~---~~~Lt~~~-~~-~~p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~ 421 (433)
T PRK04922 349 KIAMVHGS-GGQYRIAVMDLSTGS---VRTLTPGS-LD-ESPSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSA 421 (433)
T ss_pred EEEEEECC-CCceeEEEEECCCCC---eEECCCCC-CC-CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccC
Confidence 99998764 345789999987665 34444322 11 11123346677888877778889999999 56555666655
Q ss_pred ceEEEeecccc
Q psy1288 340 VGTIVGFSGKK 350 (1012)
Q Consensus 340 ~~~v~~~~~sp 350 (1012)
.+.+..++|+|
T Consensus 422 ~g~~~~p~wsp 432 (433)
T PRK04922 422 DGEVREPAWSP 432 (433)
T ss_pred CCCCCCCccCC
Confidence 55555667765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=159.97 Aligned_cols=212 Identities=11% Similarity=0.070 Sum_probs=143.2
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
.++|||++++|.+...+ ...||+.+..++..+++++.. ..+..+.|||||++|+|+.+.+|. .+||++|
T Consensus 208 ~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~-------g~~~~~~~SPDG~~la~~~~~~g~--~~Iy~~d 276 (435)
T PRK05137 208 RFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFP-------GMTFAPRFSPDGRKVVMSLSQGGN--TDIYTMD 276 (435)
T ss_pred EECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCC-------CcccCcEECCCCCEEEEEEecCCC--ceEEEEE
Confidence 34699999999987653 478999999888888887622 235688999999999999887764 5899999
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---------ccceeeeeeecCCCE
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN---------VAPITSQYITNEGPQ 260 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~---------~~~i~~~~~s~dg~~ 260 (1012)
+++++.++++........+.|||||+.|+|++.+.. ..+++.....+ ......+.|+|||+.
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g---------~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG---------SPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC---------CCeEEEEECCCCCeEEeecCCCcccCeEECCCCCE
Confidence 999998777655444567999999999999985421 11222111100 011223569999999
Q ss_pred EEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeE-EecCCEEEEEEEcCce---EEEEEEecCCCceeeee
Q psy1288 261 FVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWAT-CVANDKLILSYIHHVK---NVMHLHDLASGKHLYTF 336 (1012)
Q Consensus 261 l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~---~~l~~~dl~~G~~~~~l 336 (1012)
|++..... ..++|+.+++++.. .+ ++.... . .+... ..+++.|++.....+. .+|++++++++. .+.+
T Consensus 348 ia~~~~~~-~~~~i~~~d~~~~~---~~-~lt~~~-~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-~~~l 419 (435)
T PRK05137 348 IAFTKQGG-GQFSIGVMKPDGSG---ER-ILTSGF-L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-EREV 419 (435)
T ss_pred EEEEEcCC-CceEEEEEECCCCc---eE-eccCCC-C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-eEEc
Confidence 99988543 35789999986544 23 333321 1 22222 3466777777665554 689999995444 3555
Q ss_pred cCCceEEEeecccc
Q psy1288 337 PLDVGTIVGFSGKK 350 (1012)
Q Consensus 337 ~~~~~~v~~~~~sp 350 (1012)
+. .+.+..++|+|
T Consensus 420 ~~-~~~~~~p~Wsp 432 (435)
T PRK05137 420 PT-PGDASDPAWSP 432 (435)
T ss_pred cC-CCCccCcccCC
Confidence 54 33455677775
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=149.81 Aligned_cols=242 Identities=15% Similarity=0.120 Sum_probs=147.4
Q ss_pred EEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcC--CCCCCCc--hh
Q psy1288 405 QVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNI--RGGGEYG--ER 479 (1012)
Q Consensus 405 ~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--RG~g~~g--~~ 479 (1012)
...+.|. -|..+.+.++.|++.. .++.|+|+++||.........+......++++.|++|+.+|. ||.+..+ ..
T Consensus 15 ~~~~~s~~~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~ 93 (275)
T TIGR02821 15 FYRHKSETCGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDA 93 (275)
T ss_pred EEEEeccccCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCccc
Confidence 3444443 4677889999998643 346899999999865443322223334555667999999997 6654322 12
Q ss_pred HHhh---------hhcCC--CcchHhHHHHHHHHHHHc-CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCC
Q psy1288 480 WHDG---------GRLLN--KQNVFDDFQCAAEYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNP 547 (1012)
Q Consensus 480 ~~~~---------~~~~~--~~~~~~D~~a~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 547 (1012)
|... ....+ .......+...+..+++. -.+++++++++|+|+||++++.++.++|++|+++++.+|
T Consensus 94 w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~-- 171 (275)
T TIGR02821 94 WDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAP-- 171 (275)
T ss_pred ccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECC--
Confidence 2110 00000 011122333344444444 337889999999999999999999999999999999888
Q ss_pred ccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHH
Q psy1288 548 EISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLL 627 (1012)
Q Consensus 548 ~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~ 627 (1012)
+.+. ... +. ..+.+ ...++.+. . .+.
T Consensus 172 -~~~~----------------------~~~---------~~------~~~~~-----------~~~l~~~~--~---~~~ 197 (275)
T TIGR02821 172 -IVAP----------------------SRC---------PW------GQKAF-----------SAYLGADE--A---AWR 197 (275)
T ss_pred -ccCc----------------------ccC---------cc------hHHHH-----------HHHhcccc--c---chh
Confidence 2210 000 00 00000 00111111 0 122
Q ss_pred cCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCCh-HHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccch
Q psy1288 628 GYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSP-VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQF 706 (1012)
Q Consensus 628 ~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~-~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~ 706 (1012)
.++|...+.. ....|++++.||..|+.++. .++..+.++|+++ +.++++..+|+.+|+|... .
T Consensus 198 ~~~~~~~~~~-----~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~-------g~~v~~~~~~g~~H~f~~~----~ 261 (275)
T TIGR02821 198 SYDASLLVAD-----GGRHSTILIDQGTADQFLDEQLRPDAFEQACRAA-------GQALTLRRQAGYDHSYYFI----A 261 (275)
T ss_pred hcchHHHHhh-----cccCCCeeEeecCCCcccCccccHHHHHHHHHHc-------CCCeEEEEeCCCCccchhH----H
Confidence 2344333220 12345599999999999999 6888999999998 8999999999999998542 2
Q ss_pred hhhhHHHHHHHHh
Q psy1288 707 PLTIPVIYFYLTS 719 (1012)
Q Consensus 707 ~~~~~~~~fl~~~ 719 (1012)
..+.+.+.|..++
T Consensus 262 ~~~~~~~~~~~~~ 274 (275)
T TIGR02821 262 SFIADHLRHHAER 274 (275)
T ss_pred HhHHHHHHHHHhh
Confidence 3445566666554
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=146.03 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=100.2
Q ss_pred CCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCC
Q psy1288 396 FDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGE 475 (1012)
Q Consensus 396 ~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~ 475 (1012)
..+..+..+...+.+.||.+|.+..+.|.+. ....++||++||..... ...|.. ....|.++||.|+.+|+||.|.
T Consensus 25 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~--~~~~~~VvllHG~~~~~-~~~~~~-~~~~L~~~Gy~V~~~D~rGhG~ 100 (330)
T PLN02298 25 YALKGIKGSKSFFTSPRGLSLFTRSWLPSSS--SPPRALIFMVHGYGNDI-SWTFQS-TAIFLAQMGFACFALDLEGHGR 100 (330)
T ss_pred hhccCCccccceEEcCCCCEEEEEEEecCCC--CCCceEEEEEcCCCCCc-ceehhH-HHHHHHhCCCEEEEecCCCCCC
Confidence 3445556667778889999999988877542 23568999999974322 222222 2344666799999999999885
Q ss_pred CchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 476 YGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 476 ~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.... .+.........+|+.++++++......+..+++++|+|+||.+++.++.++|++++++|+..+
T Consensus 101 S~~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~ 167 (330)
T PLN02298 101 SEGL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAP 167 (330)
T ss_pred CCCc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecc
Confidence 4311 010111123457888888888765434445799999999999999999899999999998877
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=145.67 Aligned_cols=246 Identities=15% Similarity=0.134 Sum_probs=151.2
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHHh-CCeEEEEEcCCCCCCCchh
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLRD-FNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~ 479 (1012)
..+.+.+.+++| .|++.++.|.. ...|+||++|||....... .+.. ....++. .|+.|+.+|||...+.
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~-~~~~la~~~g~~Vv~vdYrlape~--- 126 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDR-IMRLLASYSGCTVIGIDYTLSPEA--- 126 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhH-HHHHHHHHcCCEEEEecCCCCCCC---
Confidence 467777888888 59999999863 3469999999986443332 2333 2344443 5999999999976542
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC------CCceeEEEEccCCCccc
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR------PDLFGAAIVQVGNPEIS 550 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~~i~ 550 (1012)
.....++|+.++++|+.++. .+++++|+|+|+|+||.+++.++.+. +..+.+.+..+| +.
T Consensus 127 --------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p---~~ 195 (318)
T PRK10162 127 --------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYG---LY 195 (318)
T ss_pred --------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECC---cc
Confidence 12335789999999998652 36899999999999999998877542 245677788777 22
Q ss_pred cCcceeeeecccccccCcccccccCCCCccc-ccCCC-CcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHc
Q psy1288 551 DCGRWLIVHTMKDCKNNMFHFCDLDTIPDRK-IEGKL-PLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLG 628 (1012)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~-~~~~~-plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~ 628 (1012)
+ +...+... ..... .|+.. ++..+ |....+++.+ .
T Consensus 196 ~----------------------~~~~~s~~~~~~~~~~l~~~-----~~~~~--------~~~y~~~~~~--------~ 232 (318)
T PRK10162 196 G----------------------LRDSVSRRLLGGVWDGLTQQ-----DLQMY--------EEAYLSNDAD--------R 232 (318)
T ss_pred C----------------------CCCChhHHHhCCCccccCHH-----HHHHH--------HHHhCCCccc--------c
Confidence 2 10000000 00000 01110 00000 0000111111 1
Q ss_pred CCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccc
Q psy1288 629 YSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQ 705 (1012)
Q Consensus 629 ~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~ 705 (1012)
.+|+...... ++ ....|++++++|+.|+.+ .++..+..+|+++ |.+++++.+++..|+|.... ...
T Consensus 233 ~~p~~~p~~~-~l-~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~a-------Gv~v~~~~~~g~~H~f~~~~~~~~~a 301 (318)
T PRK10162 233 ESPYYCLFNN-DL-TRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAH-------QQPCEFKLYPGTLHAFLHYSRMMDTA 301 (318)
T ss_pred CCcccCcchh-hh-hcCCCCeEEEecCCCcCc--ChHHHHHHHHHHc-------CCCEEEEEECCCceehhhccCchHHH
Confidence 1232211000 00 135678999999999876 4788999999999 99999999999999985432 122
Q ss_pred hhhhhHHHHHHHHhCC
Q psy1288 706 FPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 706 ~~~~~~~~~fl~~~l~ 721 (1012)
.+.+.++.+|+.++++
T Consensus 302 ~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 302 DDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445566678877654
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=138.35 Aligned_cols=215 Identities=19% Similarity=0.220 Sum_probs=156.1
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH----
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW---- 480 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~---- 480 (1012)
.+.++++| ..+.+++.+|++ .++.|.||.+|+-++... .-......++..||+|+++|.-+..+.....
T Consensus 4 ~v~~~~~~-~~~~~~~a~P~~---~~~~P~VIv~hei~Gl~~---~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~ 76 (236)
T COG0412 4 DVTIPAPD-GELPAYLARPAG---AGGFPGVIVLHEIFGLNP---HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEP 76 (236)
T ss_pred ceEeeCCC-ceEeEEEecCCc---CCCCCEEEEEecccCCch---HHHHHHHHHHhCCcEEEechhhccCCCCCcccccH
Confidence 45566776 789999999987 344599999999766442 3334556778889999999986533221111
Q ss_pred --Hhhh--hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCccee
Q psy1288 481 --HDGG--RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWL 556 (1012)
Q Consensus 481 --~~~~--~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~ 556 (1012)
...+ ..........|+.++++||..++.+++.+|+++|.|+||.+++.++.+.| .++++++..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg----------- 144 (236)
T COG0412 77 AELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYG----------- 144 (236)
T ss_pred HHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecC-----------
Confidence 1111 01111456789999999999999899999999999999999999998866 7899999888
Q ss_pred eeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCC
Q psy1288 557 IVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQ 636 (1012)
Q Consensus 557 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~ 636 (1012)
.. + . ..+ ...
T Consensus 145 --------------~~---------------~-------~------------------~~~---------------~~~- 154 (236)
T COG0412 145 --------------GL---------------I-------A------------------DDT---------------ADA- 154 (236)
T ss_pred --------------CC---------------C-------C------------------Ccc---------------ccc-
Confidence 00 0 0 000 001
Q ss_pred CCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc------cc---chh
Q psy1288 637 GPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT------TK---QFP 707 (1012)
Q Consensus 637 ~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~------~~---~~~ 707 (1012)
.+.++| +|+.+|+.|+.++......+.+.+..+ +..+.+.+|+++.|+|.... .+ ...
T Consensus 155 -----~~~~~p-vl~~~~~~D~~~p~~~~~~~~~~~~~~-------~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~ 221 (236)
T COG0412 155 -----PKIKVP-VLLHLAGEDPYIPAADVDALAAALEDA-------GVKVDLEIYPGAGHGFANDRADYHPGYDAAAAED 221 (236)
T ss_pred -----ccccCc-EEEEecccCCCCChhHHHHHHHHHHhc-------CCCeeEEEeCCCccccccCCCcccccCCHHHHHH
Confidence 157888 999999999999999988888888887 67899999999999997542 11 135
Q ss_pred hhhHHHHHHHHhCC
Q psy1288 708 LTIPVIYFYLTSGP 721 (1012)
Q Consensus 708 ~~~~~~~fl~~~l~ 721 (1012)
.+.++++|+.+.+.
T Consensus 222 a~~~~~~ff~~~~~ 235 (236)
T COG0412 222 AWQRVLAFFKRLLG 235 (236)
T ss_pred HHHHHHHHHHHhcc
Confidence 56777888887754
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=144.54 Aligned_cols=205 Identities=19% Similarity=0.222 Sum_probs=134.3
Q ss_pred EEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCC-CchhHHh--hhh----cCC
Q psy1288 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGE-YGERWHD--GGR----LLN 488 (1012)
Q Consensus 416 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~-~g~~~~~--~~~----~~~ 488 (1012)
+.+++..|++. ++.|.||.+|+.++.. .+.......|+++||.|+++|+-++.. .-....+ ... ...
T Consensus 1 ~~ay~~~P~~~---~~~~~Vvv~~d~~G~~---~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (218)
T PF01738_consen 1 IDAYVARPEGG---GPRPAVVVIHDIFGLN---PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPR 74 (218)
T ss_dssp EEEEEEEETTS---SSEEEEEEE-BTTBS----HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHS
T ss_pred CeEEEEeCCCC---CCCCEEEEEcCCCCCc---hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhh
Confidence 45788888872 6889999999977544 222234566778899999999866554 1111100 000 001
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCc
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNM 568 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~ 568 (1012)
......|+.+++++|.++...+.++|+++|.|+||.+++.++.+. ..+++++...| -.
T Consensus 75 ~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg---~~------------------ 132 (218)
T PF01738_consen 75 PEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG---GS------------------ 132 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES----SS------------------
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC---CC------------------
Confidence 123457888999999999878899999999999999999888775 57888888766 00
Q ss_pred ccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCc
Q psy1288 569 FHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPA 648 (1012)
Q Consensus 569 ~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~ 648 (1012)
+.. . +.... .+++.|
T Consensus 133 ------------------~~~-----------------------------~-----------~~~~~------~~~~~P- 147 (218)
T PF01738_consen 133 ------------------PPP-----------------------------P-----------PLEDA------PKIKAP- 147 (218)
T ss_dssp ------------------SGG-----------------------------G-----------HHHHG------GG--S--
T ss_pred ------------------CCC-----------------------------c-----------chhhh------cccCCC-
Confidence 000 0 00001 135677
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc------hhhhhHHHHHHHHhC
Q psy1288 649 TLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ------FPLTIPVIYFYLTSG 720 (1012)
Q Consensus 649 vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~------~~~~~~~~~fl~~~l 720 (1012)
+|+++|+.|+.++.....++.+.|+++ +.++++++||+++|||....... .+.+..+++||.++|
T Consensus 148 ~l~~~g~~D~~~~~~~~~~~~~~l~~~-------~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 148 VLILFGENDPFFPPEEVEALEEALKAA-------GVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp EEEEEETT-TTS-HHHHHHHHHHHHCT-------TTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred EeecCccCCCCCChHHHHHHHHHHHhc-------CCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999988899999888 88999999999999997654331 345667778887664
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-13 Score=135.50 Aligned_cols=251 Identities=19% Similarity=0.191 Sum_probs=162.4
Q ss_pred CCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCC
Q psy1288 397 DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEY 476 (1012)
Q Consensus 397 ~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~ 476 (1012)
......+-.++|++.+|.+|.+|++.|+.- .++.|+||..||-.+... +-..++.|.. .||+|+.+|.||.++.
T Consensus 50 ~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~--~~~~P~vV~fhGY~g~~g---~~~~~l~wa~-~Gyavf~MdvRGQg~~ 123 (321)
T COG3458 50 TLPRVEVYDVTFTGYGGARIKGWLVLPRHE--KGKLPAVVQFHGYGGRGG---EWHDMLHWAV-AGYAVFVMDVRGQGSS 123 (321)
T ss_pred cCCceEEEEEEEeccCCceEEEEEEeeccc--CCccceEEEEeeccCCCC---Cccccccccc-cceeEEEEecccCCCc
Confidence 334556788999999999999999999863 388999999998544332 2223345555 5999999999998866
Q ss_pred chh------------HHhhhhcC-----CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeE
Q psy1288 477 GER------------WHDGGRLL-----NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGA 539 (1012)
Q Consensus 477 g~~------------~~~~~~~~-----~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a 539 (1012)
..+ |...+..+ .....+.|...+++.+.....+|..||++.|+|.||.++++++.-.| ++++
T Consensus 124 ~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-rik~ 202 (321)
T COG3458 124 SQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RIKA 202 (321)
T ss_pred cccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hhhc
Confidence 220 11111111 11245789999999999999999999999999999999998887654 7789
Q ss_pred EEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCC
Q psy1288 540 AIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN 619 (1012)
Q Consensus 540 ~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~ 619 (1012)
+++.+| -.+|+..+. .++......++....+. . .|..
T Consensus 203 ~~~~~P--fl~df~r~i----------------------------~~~~~~~ydei~~y~k~------------h-~~~e 239 (321)
T COG3458 203 VVADYP--FLSDFPRAI----------------------------ELATEGPYDEIQTYFKR------------H-DPKE 239 (321)
T ss_pred cccccc--ccccchhhe----------------------------eecccCcHHHHHHHHHh------------c-CchH
Confidence 998888 222322221 01111110011111111 1 1222
Q ss_pred hHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC
Q psy1288 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 699 (1012)
Q Consensus 620 ~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~ 699 (1012)
.+.++.+.-++-.+.+. .+|.| +|+..|..|+.|||.-.+..++++.. ...+.+||--+|..+
T Consensus 240 ~~v~~TL~yfD~~n~A~------RiK~p-vL~svgL~D~vcpPstqFA~yN~l~~----------~K~i~iy~~~aHe~~ 302 (321)
T COG3458 240 AEVFETLSYFDIVNLAA------RIKVP-VLMSVGLMDPVCPPSTQFAAYNALTT----------SKTIEIYPYFAHEGG 302 (321)
T ss_pred HHHHHHHhhhhhhhHHH------hhccc-eEEeecccCCCCCChhhHHHhhcccC----------CceEEEeeccccccC
Confidence 23333333333333333 68899 99999999999999988877777653 345677777779877
Q ss_pred CccccchhhhhHHHHHHHHh
Q psy1288 700 KPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 700 ~~~~~~~~~~~~~~~fl~~~ 719 (1012)
..+.. .+.+.|+...
T Consensus 303 p~~~~-----~~~~~~l~~l 317 (321)
T COG3458 303 PGFQS-----RQQVHFLKIL 317 (321)
T ss_pred cchhH-----HHHHHHHHhh
Confidence 65543 2244566543
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=148.59 Aligned_cols=250 Identities=20% Similarity=0.225 Sum_probs=150.1
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
....+..|.+.+.+|.+|.++++.|++. .++.|+||.+||..+... .+. ....| +.+|++|+.+|.||.++...
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~--~~~~Pavv~~hGyg~~~~--~~~-~~~~~-a~~G~~vl~~d~rGqg~~~~ 125 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA--KGKLPAVVQFHGYGGRSG--DPF-DLLPW-AAAGYAVLAMDVRGQGGRSP 125 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S--SSSEEEEEEE--TT--GG--GHH-HHHHH-HHTT-EEEEE--TTTSSSS-
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC--CCCcCEEEEecCCCCCCC--Ccc-ccccc-ccCCeEEEEecCCCCCCCCC
Confidence 3456788999999999999999999852 588999999999654321 111 12334 45799999999999884433
Q ss_pred hHHh-----------hhhcCCC-----cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEE
Q psy1288 479 RWHD-----------GGRLLNK-----QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIV 542 (1012)
Q Consensus 479 ~~~~-----------~~~~~~~-----~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 542 (1012)
.... .+..... ...+.|...++++|...+.+|+++|++.|.|.||.+++.++.-.+ +++++++
T Consensus 126 d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~ 204 (320)
T PF05448_consen 126 DYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAA 204 (320)
T ss_dssp B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEE
T ss_pred CccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEe
Confidence 2111 1111101 134679999999999999999999999999999999999988765 6888888
Q ss_pred ccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCC---CC
Q psy1288 543 QVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSP---AN 619 (1012)
Q Consensus 543 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p---~~ 619 (1012)
.+| -.+|+...+ .+.. ...|... +..++ .+.++ ..
T Consensus 205 ~vP--~l~d~~~~~-------------------~~~~----~~~~y~~----~~~~~-------------~~~d~~~~~~ 242 (320)
T PF05448_consen 205 DVP--FLCDFRRAL-------------------ELRA----DEGPYPE----IRRYF-------------RWRDPHHERE 242 (320)
T ss_dssp ESE--SSSSHHHHH-------------------HHT------STTTHH----HHHHH-------------HHHSCTHCHH
T ss_pred cCC--Cccchhhhh-------------------hcCC----ccccHHH----HHHHH-------------hccCCCcccH
Confidence 877 111110000 0000 0000000 11111 11111 12
Q ss_pred hHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC
Q psy1288 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 699 (1012)
Q Consensus 620 ~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~ 699 (1012)
++.++.+.-++..+.++ .+++| +|+..|..|+.||+...+..+.++. .+..+.+||..+|...
T Consensus 243 ~~v~~~L~Y~D~~nfA~------ri~~p-vl~~~gl~D~~cPP~t~fA~yN~i~----------~~K~l~vyp~~~He~~ 305 (320)
T PF05448_consen 243 PEVFETLSYFDAVNFAR------RIKCP-VLFSVGLQDPVCPPSTQFAAYNAIP----------GPKELVVYPEYGHEYG 305 (320)
T ss_dssp HHHHHHHHTT-HHHHGG------G--SE-EEEEEETT-SSS-HHHHHHHHCC------------SSEEEEEETT--SSTT
T ss_pred HHHHHHHhhhhHHHHHH------HcCCC-EEEEEecCCCCCCchhHHHHHhccC----------CCeeEEeccCcCCCch
Confidence 34455566666666655 78999 9999999999999999888777764 3478999999999876
Q ss_pred CccccchhhhhHHHHHHHHh
Q psy1288 700 KPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 700 ~~~~~~~~~~~~~~~fl~~~ 719 (1012)
... .....+.||.++
T Consensus 306 ~~~-----~~~~~~~~l~~~ 320 (320)
T PF05448_consen 306 PEF-----QEDKQLNFLKEH 320 (320)
T ss_dssp HHH-----HHHHHHHHHHH-
T ss_pred hhH-----HHHHHHHHHhcC
Confidence 533 123456788764
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-13 Score=138.46 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=90.3
Q ss_pred EEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh--HHhhhhcCCCcchHhHH
Q psy1288 419 FILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER--WHDGGRLLNKQNVFDDF 496 (1012)
Q Consensus 419 ~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~--~~~~~~~~~~~~~~~D~ 496 (1012)
+++.|++. .++.|+||++||+.+..........+..++.+.|++|+.+|.+|++..+.. |..............|+
T Consensus 2 ~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T TIGR01840 2 YVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESL 79 (212)
T ss_pred EEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHH
Confidence 57778764 467899999999865433221111234556667999999999997654332 22221111223345678
Q ss_pred HHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 497 ~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++.++..+++++|+++|+|+||.+++.++.++|++|++++..++
T Consensus 80 ~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g 128 (212)
T TIGR01840 80 HQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAG 128 (212)
T ss_pred HHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecC
Confidence 8888888887778999999999999999999999999999999888877
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-12 Score=145.71 Aligned_cols=133 Identities=19% Similarity=0.143 Sum_probs=97.3
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
+..+.+.++..||..|+++++.|+. +++.|+||+.|| ........|.. ....++.+||.|+++|.||.|.... +
T Consensus 166 ~~~e~v~i~~~~g~~l~g~l~~P~~---~~~~P~Vli~gG-~~~~~~~~~~~-~~~~La~~Gy~vl~~D~pG~G~s~~-~ 239 (414)
T PRK05077 166 GELKELEFPIPGGGPITGFLHLPKG---DGPFPTVLVCGG-LDSLQTDYYRL-FRDYLAPRGIAMLTIDMPSVGFSSK-W 239 (414)
T ss_pred CceEEEEEEcCCCcEEEEEEEECCC---CCCccEEEEeCC-cccchhhhHHH-HHHHHHhCCCEEEEECCCCCCCCCC-C
Confidence 4578899999999899999999873 467888876554 33222222322 3456667899999999999775421 1
Q ss_pred HhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 481 HDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 481 ~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
. ..........++++++...+.+|+++|+++|+|+||++++.++..+|++++++|+..+
T Consensus 240 ~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~ 298 (414)
T PRK05077 240 K------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGP 298 (414)
T ss_pred C------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECC
Confidence 0 0011112234678899888889999999999999999999999888989999998877
|
|
| >KOG1455|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=132.83 Aligned_cols=260 Identities=14% Similarity=0.121 Sum_probs=158.6
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
..-.+.+++|.++....+.|... ..++-+|+++||....+ ...|... ...|+..||.|+..|++|+|...+. .
T Consensus 28 ~~~~~~n~rG~~lft~~W~p~~~--~~pr~lv~~~HG~g~~~-s~~~~~~-a~~l~~~g~~v~a~D~~GhG~SdGl---~ 100 (313)
T KOG1455|consen 28 SESFFTNPRGAKLFTQSWLPLSG--TEPRGLVFLCHGYGEHS-SWRYQST-AKRLAKSGFAVYAIDYEGHGRSDGL---H 100 (313)
T ss_pred eeeeEEcCCCCEeEEEecccCCC--CCCceEEEEEcCCcccc-hhhHHHH-HHHHHhCCCeEEEeeccCCCcCCCC---c
Confidence 34456788999998888888542 25667899999965433 2334333 3455567999999999998854211 1
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccc
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKD 563 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~ 563 (1012)
+........++|+.+-.+....+..-..-..+++|+||||.+++.++.+.|+.+..+|..+|
T Consensus 101 ~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaP------------------ 162 (313)
T KOG1455|consen 101 AYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAP------------------ 162 (313)
T ss_pred ccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeec------------------
Confidence 11111123345666555555555544445678999999999999999989999999999988
Q ss_pred cccCccccccc-CCCCcccccCCCCcchhhhhhhhhhhccccccccccccc----cCC--CCChHHHHHHHcCCcccCCC
Q psy1288 564 CKNNMFHFCDL-DTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESD----YGS--PANSSQFEYLLGYSPLHNIQ 636 (1012)
Q Consensus 564 ~~~~~~~~~dl-~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~----~g~--p~~~~~~~~~~~~sP~~~~~ 636 (1012)
++.+ ..+++. |+... ++-.+.. .-+.|... ... ..+++. ......+|+-...
T Consensus 163 -------mc~i~~~~kp~------p~v~~---~l~~l~~----liP~wk~vp~~d~~~~~~kdp~~-r~~~~~npl~y~g 221 (313)
T KOG1455|consen 163 -------MCKISEDTKPH------PPVIS---ILTLLSK----LIPTWKIVPTKDIIDVAFKDPEK-RKILRSDPLCYTG 221 (313)
T ss_pred -------ccccCCccCCC------cHHHH---HHHHHHH----hCCceeecCCccccccccCCHHH-HHHhhcCCceecC
Confidence 3331 122111 11000 0000000 00011100 000 012221 2233334443322
Q ss_pred CCC----------------cccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC-
Q psy1288 637 GPD----------------ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG- 699 (1012)
Q Consensus 637 ~p~----------------~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~- 699 (1012)
.|+ .+..+..| +|++||+.|..+.+..+.++++..... ...++.||+.-|+..
T Consensus 222 ~pRl~T~~ElLr~~~~le~~l~~vtvP-flilHG~dD~VTDp~~Sk~Lye~A~S~---------DKTlKlYpGm~H~Ll~ 291 (313)
T KOG1455|consen 222 KPRLKTAYELLRVTADLEKNLNEVTVP-FLILHGTDDKVTDPKVSKELYEKASSS---------DKTLKLYPGMWHSLLS 291 (313)
T ss_pred CccHHHHHHHHHHHHHHHHhccccccc-EEEEecCCCcccCcHHHHHHHHhccCC---------CCceeccccHHHHhhc
Confidence 222 23467888 999999999999999999988875543 668999999999975
Q ss_pred -CccccchhhhhHHHHHHHHh
Q psy1288 700 -KPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 700 -~~~~~~~~~~~~~~~fl~~~ 719 (1012)
+..........|+++||+++
T Consensus 292 gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 292 GEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred CCCchhHHHHHHHHHHHHHhc
Confidence 44444556778999999875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-11 Score=139.92 Aligned_cols=198 Identities=9% Similarity=0.005 Sum_probs=129.2
Q ss_pred CCCeeeCCEEEEEEEcCC-CCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGL-QNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHF 187 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~-~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v 187 (1012)
..+-.-+.+++|+....+ .....||+.+..+...++|+. +...+..++|||||++|||+...++ ..+||+
T Consensus 162 g~~g~f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~-------~~~~v~~p~wSPDG~~la~~s~~~~--~~~i~i 232 (429)
T PRK01742 162 AIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNR-------SSQPLMSPAWSPDGSKLAYVSFENK--KSQLVV 232 (429)
T ss_pred CCCCccCCEEEEEEEEcCCCceEEEEEECCCCCCceEecc-------CCCccccceEcCCCCEEEEEEecCC--CcEEEE
Confidence 334456789999887542 235789999987777777776 3345788999999999999876544 358999
Q ss_pred EECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECC
Q psy1288 188 KDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNK 267 (1012)
Q Consensus 188 ~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~ 267 (1012)
+|+++|+...++........++|||||+.|+|+.... |
T Consensus 233 ~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~---------------------------------g--------- 270 (429)
T PRK01742 233 HDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD---------------------------------G--------- 270 (429)
T ss_pred EeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC---------------------------------C---------
Confidence 9999988655443222335789999999999975320 0
Q ss_pred CCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeec
Q psy1288 268 DAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFS 347 (1012)
Q Consensus 268 ~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~ 347 (1012)
..+||.+|++++. .+.+..+. ..........+++.|++....++..+||.++..++.. ..++. .+ ....
T Consensus 271 ---~~~Iy~~d~~~~~---~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~-~~--~~~~ 339 (429)
T PRK01742 271 ---VLNIYVMGANGGT---PSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGG-RG--YSAQ 339 (429)
T ss_pred ---cEEEEEEECCCCC---eEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecC-CC--CCcc
Confidence 1234444443332 23333222 2222222334656788877777788999998854433 34432 22 2467
Q ss_pred ccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 348 GKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 348 ~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
|+|||+.|++... ..++.+|+
T Consensus 340 ~SpDG~~ia~~~~-----~~i~~~Dl 360 (429)
T PRK01742 340 ISADGKTLVMING-----DNVVKQDL 360 (429)
T ss_pred CCCCCCEEEEEcC-----CCEEEEEC
Confidence 9999999888754 35788998
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=145.14 Aligned_cols=223 Identities=15% Similarity=0.146 Sum_probs=145.5
Q ss_pred CCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEE
Q psy1288 108 YSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHF 187 (1012)
Q Consensus 108 ~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v 187 (1012)
.+.++++|..++|+....++ .+.+|+.+...+..+++++.+ .....++|||||++|||+..++|+ .+||+
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~-------g~~~~P~fspDG~~l~f~~~rdg~--~~iy~ 266 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFN-------GNNGAPAFSPDGSKLAFSSSRDGS--PDIYL 266 (425)
T ss_pred ccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccC-------CccCCccCCCCCCEEEEEECCCCC--ccEEE
Confidence 34566999999998876533 278999999888888887744 245689999999999999999875 59999
Q ss_pred EECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc----cCCCCCceEEEEeeccccceeeeeeecCCCEEEE
Q psy1288 188 KDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK----KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVF 263 (1012)
Q Consensus 188 ~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~----~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~ 263 (1012)
+|+.++...+++...+....++|||||++|+|++++...... .++....++.... ..-..+.|+|||++|+|
T Consensus 267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~----~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG----GGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC----CCCcCccCCCCCCEEEE
Confidence 999999877766655555789999999999999876421100 1111111111111 11125679999999999
Q ss_pred EECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEE
Q psy1288 264 KTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTI 343 (1012)
Q Consensus 264 ~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v 343 (1012)
.+..++ ...++..++..... |+.+.... ..... ....++..+++.....+.+.|...+. +|+....+....+.+
T Consensus 343 ~~~~~g-~~~i~~~~~~~~~~--~~~lt~~~-~~e~p-s~~~ng~~i~~~s~~~~~~~l~~~s~-~g~~~~~~~~~~~~~ 416 (425)
T COG0823 343 ESSSGG-QWDIDKNDLASGGK--IRILTSTY-LNESP-SWAPNGRMIMFSSGQGGGSVLSLVSL-DGRVSRPLPLADGDV 416 (425)
T ss_pred EeccCC-ceeeEEeccCCCCc--EEEccccc-cCCCC-CcCCCCceEEEeccCCCCceEEEeec-cceeEEEEeccCcce
Confidence 984322 36788887765441 44333221 11111 11234456666666666788888887 676555555444555
Q ss_pred Eeecccc
Q psy1288 344 VGFSGKK 350 (1012)
Q Consensus 344 ~~~~~sp 350 (1012)
..+.|++
T Consensus 417 ~~p~w~~ 423 (425)
T COG0823 417 RVPAWSP 423 (425)
T ss_pred ecccccC
Confidence 4555543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.8e-12 Score=145.04 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=140.8
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|.+.+. +...||+.+..+++.+++.... + ....++|||||++|+|+.+.+|. .+||++
T Consensus 209 p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~-----g--~~~~~~wSPDG~~La~~~~~~g~--~~Iy~~ 277 (429)
T PRK01742 209 PAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFR-----G--HNGAPAFSPDGSRLAFASSKDGV--LNIYVM 277 (429)
T ss_pred ceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCC-----C--ccCceeECCCCCEEEEEEecCCc--EEEEEE
Confidence 44569999999998754 3478999988777777776532 1 23468999999999999877664 489999
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec-------cccceeeeeeecCCCEE
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV-------NVAPITSQYITNEGPQF 261 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~-------~~~~i~~~~~s~dg~~l 261 (1012)
|+++++.++++........+.|||||+.|+|++.+.. ..+++..... .... ....|+|||+.|
T Consensus 278 d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g---------~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 278 GANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG---------SPQVYRMSASGGGASLVGGRG-YSAQISADGKTL 347 (429)
T ss_pred ECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC---------CceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence 9999988777665555678999999999999975421 1122211110 0011 123589999999
Q ss_pred EEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCce
Q psy1288 262 VFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVG 341 (1012)
Q Consensus 262 ~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~ 341 (1012)
++... ..++.+|+.++. ++.+...... ......++++.+++...+++...+++++. +|+..+.++...+
T Consensus 348 a~~~~-----~~i~~~Dl~~g~---~~~lt~~~~~--~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g 416 (429)
T PRK01742 348 VMING-----DNVVKQDLTSGS---TEVLSSTFLD--ESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDG 416 (429)
T ss_pred EEEcC-----CCEEEEECCCCC---eEEecCCCCC--CCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCC
Confidence 98864 357888987765 3444322111 11123446567777776666667777777 5766666765555
Q ss_pred EEEeeccccc
Q psy1288 342 TIVGFSGKKK 351 (1012)
Q Consensus 342 ~v~~~~~spd 351 (1012)
.+..++|+|-
T Consensus 417 ~~~~p~wsp~ 426 (429)
T PRK01742 417 QVKFPAWSPY 426 (429)
T ss_pred CCCCcccCCC
Confidence 5667778763
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=140.95 Aligned_cols=136 Identities=13% Similarity=0.026 Sum_probs=90.7
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
..++.+..+.||.+|.+..+.|.+ ..+.|+||++||...... ..|. .....|+++||.|+.+|+||.|.....
T Consensus 60 ~~~~~~~~~~~g~~l~~~~~~p~~---~~~~~~iv~lHG~~~~~~-~~~~-~~~~~l~~~g~~v~~~D~~G~G~S~~~-- 132 (349)
T PLN02385 60 KTEESYEVNSRGVEIFSKSWLPEN---SRPKAAVCFCHGYGDTCT-FFFE-GIARKIASSGYGVFAMDYPGFGLSEGL-- 132 (349)
T ss_pred ceeeeeEEcCCCCEEEEEEEecCC---CCCCeEEEEECCCCCccc-hHHH-HHHHHHHhCCCEEEEecCCCCCCCCCC--
Confidence 344445667899999998888864 245689999999643221 1122 234456657999999999998754211
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.........+|+.+.++.+.........++.++|+|+||.+++.++.++|+++.++|...|
T Consensus 133 -~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p 195 (349)
T PLN02385 133 -HGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAP 195 (349)
T ss_pred -CCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecc
Confidence 000001112244555555555443334456899999999999999999999999999888876
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=133.31 Aligned_cols=265 Identities=11% Similarity=0.054 Sum_probs=143.7
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+.++||.+|++.++.|.. .+.++|+++||..... ..|.. ....|.++||.|+.+|.||.|..... .....
T Consensus 5 ~~~~~g~~l~~~~~~~~~----~~~~~v~llHG~~~~~--~~~~~-~~~~l~~~g~~via~D~~G~G~S~~~---~~~~~ 74 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT----YPKALVFISHGAGEHS--GRYEE-LAENISSLGILVFSHDHIGHGRSNGE---KMMID 74 (276)
T ss_pred eecCCCCEEEEEeccCCC----CCCEEEEEeCCCcccc--chHHH-HHHHHHhCCCEEEEccCCCCCCCCCc---cCCcC
Confidence 456799999999998742 4568899999975432 24443 34556667999999999998754221 00001
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNN 567 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~ 567 (1012)
.....++|+...+.++... ....++.++|+|+||.+++.++.+.|++++++|..+| ..+.........+.. .
T Consensus 75 ~~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p---~~~~~~~~~~~~~~~---~ 146 (276)
T PHA02857 75 DFGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSP---LVNAEAVPRLNLLAA---K 146 (276)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEecc---ccccccccHHHHHHH---H
Confidence 1112245666666655443 2245799999999999999999899999999999877 111000000000000 0
Q ss_pred cccccccCCCCcccccCCCC--cchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCc--ccCCCCCCcccC
Q psy1288 568 MFHFCDLDTIPDRKIEGKLP--LTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSP--LHNIQGPDELKG 643 (1012)
Q Consensus 568 ~~~~~dl~~~~~~~~~~~~p--lt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP--~~~~~~p~~~~~ 643 (1012)
+... .++........+ ++.. ......+.. . .+ .............+..... ...+ .+
T Consensus 147 ~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~~~l------~~ 207 (276)
T PHA02857 147 LMGI----FYPNKIVGKLCPESVSRD---MDEVYKYQY---D-PL--VNHEKIKAGFASQVLKATNKVRKII------PK 207 (276)
T ss_pred HHHH----hCCCCccCCCCHhhccCC---HHHHHHHhc---C-CC--ccCCCccHHHHHHHHHHHHHHHHhc------cc
Confidence 0000 000000000000 0000 000000000 0 00 0000000000011111100 0112 25
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc-chhhhhHHHHHHHHhC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK-QFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~-~~~~~~~~~~fl~~~l 720 (1012)
+++| +|++||++|..+++..+.++...+.. .+.+.+++++||........ ..+.+.++.+|++.+.
T Consensus 208 i~~P-vliv~G~~D~i~~~~~~~~l~~~~~~----------~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 208 IKTP-ILILQGTNNEISDVSGAYYFMQHANC----------NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred CCCC-EEEEecCCCCcCChHHHHHHHHHccC----------CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 7888 99999999999999988777665421 35788899999987654332 3456778889998763
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-11 Score=141.67 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=144.0
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|....+ +...||+.+..++..+.+.... .....+.|||||++|+|+.+..|. .+||++
T Consensus 195 p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~-------~~~~~~~~spDg~~l~~~~~~~~~--~~i~~~ 263 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFP-------GMNGAPAFSPDGSKLAVSLSKDGN--PDIYVM 263 (417)
T ss_pred ccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCC-------CCccceEECCCCCEEEEEECCCCC--ccEEEE
Confidence 34679999999987655 3467999988777666665421 124468999999999999877654 489999
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---------ccceeeeeeecCCC
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN---------VAPITSQYITNEGP 259 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~---------~~~i~~~~~s~dg~ 259 (1012)
|+++++..+++........+.|+|||+.|+|++.+.. ..+++.....+ ......+.|+|||+
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g---------~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG---------SPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGD 334 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC---------CceEEEEECCCCCEEEeecCCCCccCeEECCCCC
Confidence 9999887666544333457899999999999876421 11222211100 01122346999999
Q ss_pred EEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD 339 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~ 339 (1012)
.|++..... ..++|+.+++.++. ..++.+... ........+++.|++....++...+++++. +|+....++.+
T Consensus 335 ~i~~~~~~~-~~~~i~~~d~~~~~----~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~ 407 (417)
T TIGR02800 335 LIAFVHREG-GGFNIAVMDLDGGG----ERVLTDTGL-DESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLG 407 (417)
T ss_pred EEEEEEccC-CceEEEEEeCCCCC----eEEccCCCC-CCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC
Confidence 999887654 56789999997743 344443221 112123446678888888888888999887 56666667766
Q ss_pred ceEEEeeccc
Q psy1288 340 VGTIVGFSGK 349 (1012)
Q Consensus 340 ~~~v~~~~~s 349 (1012)
.+.+..++|+
T Consensus 408 ~g~~~~~~ws 417 (417)
T TIGR02800 408 NGDVREPAWS 417 (417)
T ss_pred CCCcCCCCCC
Confidence 6666555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-11 Score=146.71 Aligned_cols=238 Identities=13% Similarity=0.077 Sum_probs=141.2
Q ss_pred HHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC--CCC------------CCcEEEEec
Q psy1288 454 KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG--YTQ------------SSRLAIQGG 519 (1012)
Q Consensus 454 ~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~--~~d------------~~~i~i~G~ 519 (1012)
...++..+||+|+..|.||.++..+.+.. ......+|..++++|+..+. ++| ..+|+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 34677778999999999999876554422 23456789999999999542 223 579999999
Q ss_pred ChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhh
Q psy1288 520 SNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDML 599 (1012)
Q Consensus 520 S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~ 599 (1012)
||||+++..+++..|..++|+|+.++ +++|.+++..++....+..+. -.+...+...+..... .... .....
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~---is~~yd~yr~~G~~~~~~g~~-ged~d~l~~~~~~r~~-~~~~---~~~~~ 417 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAA---ISSWYDYYRENGLVRAPGGYQ-GEDLDVLAELTYSRNL-LAGD---YLRHN 417 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCC---CCcHHHHhhcCCceeccCCcC-CcchhhHHHHhhhccc-Ccch---hhcch
Confidence 99999999888888888999999999 888765543322211110000 0000000000000000 0000 00000
Q ss_pred -hccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhcc
Q psy1288 600 -KFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRD 678 (1012)
Q Consensus 600 -~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~ 678 (1012)
.+.... . .+ ..+-....+..-+.|...++..++. +++.| +|++||..|..|++.++.+++.+|+++
T Consensus 418 ~~~~~~~-~-~~-~~~~~~~~~~y~~fW~~rn~~~~~~------kIkvP-vLlIhGw~D~~V~~~~s~~ly~aL~~~--- 484 (767)
T PRK05371 418 EACEKLL-A-EL-TAAQDRKTGDYNDFWDDRNYLKDAD------KIKAS-VLVVHGLNDWNVKPKQVYQWWDALPEN--- 484 (767)
T ss_pred HHHHHHH-h-hh-hhhhhhcCCCccHHHHhCCHhhHhh------CCCCC-EEEEeeCCCCCCChHHHHHHHHHHHhc---
Confidence 000000 0 00 0000000001112345555555555 68899 999999999999999999999999987
Q ss_pred CCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCCC
Q psy1288 679 YPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 679 ~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
+.+..+.+. .++|+...... ..+....+++|++++|+..
T Consensus 485 ----g~pkkL~l~-~g~H~~~~~~~-~~d~~e~~~~Wfd~~LkG~ 523 (767)
T PRK05371 485 ----GVPKKLFLH-QGGHVYPNNWQ-SIDFRDTMNAWFTHKLLGI 523 (767)
T ss_pred ----CCCeEEEEe-CCCccCCCchh-HHHHHHHHHHHHHhccccC
Confidence 777777665 45787644322 2344556779999998753
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-11 Score=133.10 Aligned_cols=255 Identities=17% Similarity=0.183 Sum_probs=158.1
Q ss_pred eeeCCEEEEEEEcCCC----CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEE
Q psy1288 112 QRQGDHYFFFHNTGLQ----NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHF 187 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~----~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v 187 (1012)
||||+++++..+.... ....+|+.+...++.+.|... ...+..+.|||||++|||+.+. +||+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-------~~~~~~~~~sP~g~~~~~v~~~------nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-------PPKLQDAKWSPDGKYIAFVRDN------NLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-------ETTBSEEEE-SSSTEEEEEETT------EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-------ccccccceeecCCCeeEEEecC------ceEE
Confidence 4899998887663211 235788888888877777663 1236789999999999999752 8999
Q ss_pred EECCCCceeceeecc------------------eeeeeeEEeeCCCeEEEEecCCCCCcc--------------------
Q psy1288 188 KDVATGKEYPEVLHR------------------LKFVSIAWTHDHKGVFYSNQEPKSKSK-------------------- 229 (1012)
Q Consensus 188 ~dl~tg~~~~~t~~~------------------~~~~~~~WSpDG~~l~y~~~~~~~~g~-------------------- 229 (1012)
.++.+++.+++|..+ .....+.|||||+.|+|.+.+......
T Consensus 68 ~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~ 147 (353)
T PF00930_consen 68 RDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR 147 (353)
T ss_dssp ESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE
T ss_pred EECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc
Confidence 999999888777644 012668899999999999855332100
Q ss_pred --cCCCCCce--EEEEeeccc--cc-------------eeeeeeecCCCEEEE-EECCCCCCceEEEEeCCCCcccCcEE
Q psy1288 230 --KHSKKNRS--SAYHLTVNV--AP-------------ITSQYITNEGPQFVF-KTNKDAPNYRLITIDFDNFAESNWKT 289 (1012)
Q Consensus 230 --~~~~~~~~--l~~~~~~~~--~~-------------i~~~~~s~dg~~l~~-~tn~~~~~~~L~~~dl~~~~~~~~~~ 289 (1012)
..+..+.. ++.....+. .. +....|++++++|++ .+||......|..+|..++. .+.
T Consensus 148 YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~---~~~ 224 (353)
T PF00930_consen 148 YPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE---TRV 224 (353)
T ss_dssp --BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT---CEE
T ss_pred cCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc---eeE
Confidence 00011111 111100000 00 112358899985555 56888888999999997765 233
Q ss_pred eeccCCCceee---eeEE--ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEE-EeecccccCcEEEEEecCCC
Q psy1288 290 LIEENKDDVLD---WATC--VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTI-VGFSGKKKYSEIFYSFMSFL 363 (1012)
Q Consensus 290 l~~~~~~~~~~---~~~~--~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v-~~~~~spdg~~l~~~~ss~~ 363 (1012)
+..+.....++ .... .+++.+++....+|..||++++.+++. .+.|+.....| ..+.++++++.|+|.++...
T Consensus 225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred EEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCC
Confidence 33332222221 2222 355666666668899999999995544 45777665555 34677889999999987733
Q ss_pred -CCcEEEEEeCCCCCCC-CCCcceEEEEe
Q psy1288 364 -QPTIIFHCNIPARVDP-NSKLETSIFRE 390 (1012)
Q Consensus 364 -~p~~l~~~d~~~~~~~-~g~~~~~~l~~ 390 (1012)
.-..||++++ + ++ +.+.|+.
T Consensus 304 p~~r~lY~v~~-----~~~~--~~~~LT~ 325 (353)
T PF00930_consen 304 PGERHLYRVSL-----DSGG--EPKCLTC 325 (353)
T ss_dssp TTSBEEEEEET-----TETT--EEEESST
T ss_pred CCceEEEEEEe-----CCCC--CeEeccC
Confidence 2357999999 4 44 5666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=127.82 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=124.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCC----CCchhHHhhhhcCCCcch-------HhHHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGG----EYGERWHDGGRLLNKQNV-------FDDFQC 498 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g----~~g~~~~~~~~~~~~~~~-------~~D~~a 498 (1012)
...|+||++||..+... .|.. ....+...+..+..+.++|.. ..|..|..... ...... ...+.+
T Consensus 14 ~~~~~vIlLHG~G~~~~--~~~~-l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~~-~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV--AMGE-IGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQG-ITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCcEEEEEeCCCCChH--HHHH-HHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCCC-CCccchHHHHHHHHHHHHH
Confidence 45689999999654332 3333 334455446444455555532 22456654211 111111 223334
Q ss_pred HHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCC
Q psy1288 499 AAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIP 578 (1012)
Q Consensus 499 ~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~ 578 (1012)
.++++.++..+++++|+++|+|+||.+++.++.+.|+++.+++...+ .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg-------------------------~------- 137 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSG-------------------------R------- 137 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecc-------------------------c-------
Confidence 55666666667889999999999999999988888888877776665 0
Q ss_pred cccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCC
Q psy1288 579 DRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDD 658 (1012)
Q Consensus 579 ~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~ 658 (1012)
+ .. .+. .. ..+.| +|++||.+|+
T Consensus 138 -------------------------------~-~~--~~~----------------~~------~~~~p-vli~hG~~D~ 160 (232)
T PRK11460 138 -------------------------------Y-AS--LPE----------------TA------PTATT-IHLIHGGEDP 160 (232)
T ss_pred -------------------------------c-cc--ccc----------------cc------cCCCc-EEEEecCCCC
Confidence 0 00 000 00 12345 9999999999
Q ss_pred CCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 659 RVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 659 ~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.|++..+.++...|+++ +..++++++++++|++.. +++.++.+|+.+.+..
T Consensus 161 vvp~~~~~~~~~~L~~~-------g~~~~~~~~~~~gH~i~~------~~~~~~~~~l~~~l~~ 211 (232)
T PRK11460 161 VIDVAHAVAAQEALISL-------GGDVTLDIVEDLGHAIDP------RLMQFALDRLRYTVPK 211 (232)
T ss_pred ccCHHHHHHHHHHHHHC-------CCCeEEEEECCCCCCCCH------HHHHHHHHHHHHHcch
Confidence 99999999999999988 888999999999999853 5566677888887643
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=135.99 Aligned_cols=241 Identities=20% Similarity=0.191 Sum_probs=147.4
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC-hhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS-VTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
..++..+++.++.| ......+.|+||++|||.......... .....++...|+.|+++|||-..+. .
T Consensus 58 ~~~~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~ 125 (312)
T COG0657 58 GPSGDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------P 125 (312)
T ss_pred CCCCCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------C
Confidence 34556678888888 223456789999999996555443333 3445566667999999999976643 3
Q ss_pred CcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCCccccCcceeeeecc
Q psy1288 489 KQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNPEISDCGRWLIVHTM 561 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~~i~d~~~~~~~~~~ 561 (1012)
....++|+.+++.|+.++. .+|+++|+++|+|+||.+++.++....+ ...+.+...| ..|...
T Consensus 126 ~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P---~~d~~~------- 195 (312)
T COG0657 126 FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISP---LLDLTS------- 195 (312)
T ss_pred CCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEec---ccCCcc-------
Confidence 3455789999999999874 3799999999999999999887765432 3466777777 222100
Q ss_pred cccccCcccccccCCCCcccc-cCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCc
Q psy1288 562 KDCKNNMFHFCDLDTIPDRKI-EGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDE 640 (1012)
Q Consensus 562 ~~~~~~~~~~~dl~~~~~~~~-~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~ 640 (1012)
..+.... .....++... +..+ +.. .+ .+...+... ...+|+....
T Consensus 196 --------------~~~~~~~~~~~~~~~~~~--~~~~--~~~-----~~---~~~~~~~~~----p~~spl~~~~---- 241 (312)
T COG0657 196 --------------SAASLPGYGEADLLDAAA--ILAW--FAD-----LY---LGAAPDRED----PEASPLASDD---- 241 (312)
T ss_pred --------------cccchhhcCCccccCHHH--HHHH--HHH-----Hh---CcCccccCC----CccCcccccc----
Confidence 0000000 0001111100 0000 000 00 011100000 1234443321
Q ss_pred ccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc-cchhhhhHHHHHHH
Q psy1288 641 LKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT-KQFPLTIPVIYFYL 717 (1012)
Q Consensus 641 ~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~-~~~~~~~~~~~fl~ 717 (1012)
-...|++|+++|+.|+..+ ++..+..+|+++ ++++++..+++..|+|..... ...+.+..+..|+.
T Consensus 242 --~~~lPP~~i~~a~~D~l~~--~~~~~a~~L~~a-------gv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~ 308 (312)
T COG0657 242 --LSGLPPTLIQTAEFDPLRD--EGEAYAERLRAA-------GVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLR 308 (312)
T ss_pred --ccCCCCEEEEecCCCcchh--HHHHHHHHHHHc-------CCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHH
Confidence 0126779999999999877 888999999999 999999999999999844332 12233344445554
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-10 Score=127.88 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=84.0
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
+...+...||.++.+..+.+. .+.++|+++||..... ..|.. ....+.+.||.|+.+|+||.|.........
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~~--~~y~~-~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~ 102 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIESY--VKYAE-LAYDLFHLGYDVLIIDHRGQGRSGRLLDDP 102 (330)
T ss_pred cceEEEcCCCCEEEEEEccCC-----CCCcEEEEECCccchH--HHHHH-HHHHHHHCCCeEEEEcCCCCCCCCCCCCCC
Confidence 445566779999988777553 2346899999964322 12222 233455579999999999988654321110
Q ss_pred hhcCCCcchHhH----HHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDD----FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D----~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
. ......+++ +.+.++.+... .+..++.++|+|+||.+++.++.++|+.++++|..+|
T Consensus 103 ~--~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p 164 (330)
T PRK10749 103 H--RGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAP 164 (330)
T ss_pred C--cCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECc
Confidence 0 001123444 44444433322 2457899999999999999999889999999998877
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=125.86 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=91.0
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
+..+.+.||..+.+..+.+.. .+..+||.+||...... .|.. ....|..+||.|+..|.||+|...+
T Consensus 11 ~~~~~~~d~~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh~~--ry~~-la~~l~~~G~~V~~~D~RGhG~S~r------ 77 (298)
T COG2267 11 EGYFTGADGTRLRYRTWAAPE----PPKGVVVLVHGLGEHSG--RYEE-LADDLAARGFDVYALDLRGHGRSPR------ 77 (298)
T ss_pred cceeecCCCceEEEEeecCCC----CCCcEEEEecCchHHHH--HHHH-HHHHHHhCCCEEEEecCCCCCCCCC------
Confidence 344677899999888877654 22269999999754332 2222 3456667899999999999997643
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCC--CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGY--TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~--~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
........|+|....++.+++... .-..+++++||||||++++..+.+.+..+.++|..+|
T Consensus 78 ~~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP 140 (298)
T COG2267 78 GQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSP 140 (298)
T ss_pred CCcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECc
Confidence 112223336666666655555422 2346899999999999999999999999999999988
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-11 Score=119.38 Aligned_cols=217 Identities=15% Similarity=0.166 Sum_probs=139.6
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..-.|+++||-.+...+..+ ....|.++||.|.+|+++|+|-....+..-+..+| ++|+.++.++|.+.++
T Consensus 14 G~~AVLllHGFTGt~~Dvr~---Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy-- 84 (243)
T COG1647 14 GNRAVLLLHGFTGTPRDVRM---LGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY-- 84 (243)
T ss_pred CCEEEEEEeccCCCcHHHHH---HHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC--
Confidence 34789999996554432222 34567788999999999999988777766555555 5688889999998877
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcch
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQ 590 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~ 590 (1012)
+.|++.|.|+||.+++.++.+.| .+.++..+++..+.++. +.+
T Consensus 85 -~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~--------------------------------~ii-- 127 (243)
T COG1647 85 -DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWR--------------------------------III-- 127 (243)
T ss_pred -CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccch--------------------------------hhh--
Confidence 68999999999999999999987 46666665522222210 001
Q ss_pred hhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCC--ccc----------CCCCCCcccCCCCCcEEEEeeCCCC
Q psy1288 591 VVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYS--PLH----------NIQGPDELKGKQYPATLLMTADHDD 658 (1012)
Q Consensus 591 ~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~s--P~~----------~~~~p~~~~~~~~P~vLiihG~~D~ 658 (1012)
...+.+-+ . ...+-.......-+.++++. |.. .+. .+++.+..| +|++.|.+|+
T Consensus 128 -----e~~l~y~~-----~-~kk~e~k~~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~--~~~~~I~~p-t~vvq~~~D~ 193 (243)
T COG1647 128 -----EGLLEYFR-----N-AKKYEGKDQEQIDKEMKSYKDTPMTTTAQLKKLIKDAR--RSLDKIYSP-TLVVQGRQDE 193 (243)
T ss_pred -----HHHHHHHH-----H-hhhccCCCHHHHHHHHHHhhcchHHHHHHHHHHHHHHH--hhhhhcccc-hhheecccCC
Confidence 01111100 0 00111111111112233333 111 111 123367788 9999999999
Q ss_pred CCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 659 RVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 659 ~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
.|+...+..++..+.. .+..|.++.+.||-...+..+ -+...+++.||+
T Consensus 194 mv~~~sA~~Iy~~v~s---------~~KeL~~~e~SgHVIt~D~Er-d~v~e~V~~FL~ 242 (243)
T COG1647 194 MVPAESANFIYDHVES---------DDKELKWLEGSGHVITLDKER-DQVEEDVITFLE 242 (243)
T ss_pred CCCHHHHHHHHHhccC---------CcceeEEEccCCceeecchhH-HHHHHHHHHHhh
Confidence 9999988887777653 466899999999998775543 245567778875
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=119.44 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=88.5
Q ss_pred EEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch--hHHhhhhcCCCcchH
Q psy1288 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE--RWHDGGRLLNKQNVF 493 (1012)
Q Consensus 416 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~--~~~~~~~~~~~~~~~ 493 (1012)
|.+.++.|++.. .++.|+||.+||+.+......-...+..+.++.|++|+.++......... .|.. .....+....
T Consensus 1 l~Y~lYvP~~~~-~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d~ 78 (220)
T PF10503_consen 1 LSYRLYVPPGAP-RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGDV 78 (220)
T ss_pred CcEEEecCCCCC-CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccch
Confidence 357788888753 35789999999986543211111234455666799999998543222222 3333 1122223344
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+...++++..+..+|++||++.|.|+||.|+..++..+|++|.++...++
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG 130 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSG 130 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecc
Confidence 4455667888888889999999999999999999999999999999887777
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-11 Score=124.38 Aligned_cols=200 Identities=20% Similarity=0.172 Sum_probs=118.7
Q ss_pred EEEEcCCCCCCCCCCcChhHHHHHH-hCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc---CCCC
Q psy1288 435 ILYGYGGFAVSLQPGFSVTKIVFLR-DFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS---GYTQ 510 (1012)
Q Consensus 435 vv~~hGg~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~---~~~d 510 (1012)
||++|||................++ +.|++|+.+|||-..+ ......++|+.++++|+.++ -..|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 6899999766554444444444444 4799999999996543 23345688999999999998 2468
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKL 586 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~ 586 (1012)
+++|+++|.|+||.+++.++.+..+ ..++++..+| +.|+.... -..+.... .....
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p---~~d~~~~~-----------~~~~~~~~------~~~~~ 129 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISP---WTDLQDFD-----------GPSYDDSN------ENKDD 129 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESC---HSSTSTSS-----------CHHHHHHH------HHSTT
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccc---cccchhcc-----------cccccccc------ccccc
Confidence 9999999999999999888764322 4788999988 44320000 00000000 00000
Q ss_pred C-cchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHH
Q psy1288 587 P-LTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHS 665 (1012)
Q Consensus 587 p-lt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s 665 (1012)
+ ++.. ..+.. + ..+-...+.. ....+|..... ....|++++++|+.|.. ..++
T Consensus 130 ~~~~~~---~~~~~----------~-~~~~~~~~~~----~~~~sp~~~~~------~~~~Pp~~i~~g~~D~l--~~~~ 183 (211)
T PF07859_consen 130 PFLPAP---KIDWF----------W-KLYLPGSDRD----DPLASPLNASD------LKGLPPTLIIHGEDDVL--VDDS 183 (211)
T ss_dssp SSSBHH---HHHHH----------H-HHHHSTGGTT----STTTSGGGSSC------CTTCHEEEEEEETTSTT--HHHH
T ss_pred cccccc---ccccc----------c-cccccccccc----ccccccccccc------cccCCCeeeeccccccc--hHHH
Confidence 0 0000 00000 0 0000000000 01335554411 34688999999999975 4688
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCC
Q psy1288 666 LKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 698 (1012)
Q Consensus 666 ~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~ 698 (1012)
..+.++|++. +.+++++++++..|+|
T Consensus 184 ~~~~~~L~~~-------gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 184 LRFAEKLKKA-------GVDVELHVYPGMPHGF 209 (211)
T ss_dssp HHHHHHHHHT-------T-EEEEEEETTEETTG
T ss_pred HHHHHHHHHC-------CCCEEEEEECCCeEEe
Confidence 8999999998 9999999999999986
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=122.99 Aligned_cols=226 Identities=16% Similarity=0.093 Sum_probs=152.6
Q ss_pred cCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecce
Q psy1288 124 TGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRL 203 (1012)
Q Consensus 124 ~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~ 203 (1012)
+.+.....|+..+-.+...+.+++ ....+-.+.|||||+.++|..-..+.. .+||++|+++|+.........
T Consensus 167 ~~~~~~~~l~~~D~dg~~~~~l~~-------~~~~~~~p~ws~~~~~~~y~~f~~~~~-~~i~~~~l~~g~~~~i~~~~g 238 (425)
T COG0823 167 DGGPLPYELALGDYDGYNQQKLTD-------SGSLILTPAWSPDGKKLAYVSFELGGC-PRIYYLDLNTGKRPVILNFNG 238 (425)
T ss_pred ccCCCCceEEEEccCCcceeEecc-------cCcceeccccCcCCCceEEEEEecCCC-ceEEEEeccCCccceeeccCC
Confidence 345567889999887666677776 334567899999999999997765532 689999999998655433333
Q ss_pred eeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec--------cccce-eeeeeecCCCEEEEEECCCCCCceE
Q psy1288 204 KFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV--------NVAPI-TSQYITNEGPQFVFKTNKDAPNYRL 274 (1012)
Q Consensus 204 ~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~--------~~~~i-~~~~~s~dg~~l~~~tn~~~~~~~L 274 (1012)
....++|||||+.|+|+..+.. +..++..... +..++ ..+.|+|||++|+|.+++.+ .-+|
T Consensus 239 ~~~~P~fspDG~~l~f~~~rdg---------~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G-~p~I 308 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRDG---------SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG-RPQI 308 (425)
T ss_pred ccCCccCCCCCCEEEEEECCCC---------CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC-Ccce
Confidence 3478999999999999986532 1222221110 00111 14569999999999999875 3489
Q ss_pred EEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcE
Q psy1288 275 ITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSE 354 (1012)
Q Consensus 275 ~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~ 354 (1012)
+.++++..+ .++++....... ......+++.+++....+|...+...++.++...+.++.. ......+++++++.
T Consensus 309 ~~~~~~g~~---~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~-~~~e~ps~~~ng~~ 383 (425)
T COG0823 309 YLYDLEGSQ---VTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST-YLNESPSWAPNGRM 383 (425)
T ss_pred EEECCCCCc---eeEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc-ccCCCCCcCCCCce
Confidence 999998765 355555543333 2223456678888776566677888888666534445433 22336688899998
Q ss_pred EEEEecCCCCCcEEEEEeC
Q psy1288 355 IFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 355 l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.|..... .-..++.++.
T Consensus 384 i~~~s~~~-~~~~l~~~s~ 401 (425)
T COG0823 384 IMFSSGQG-GGSVLSLVSL 401 (425)
T ss_pred EEEeccCC-CCceEEEeec
Confidence 88887766 3445666665
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-09 Score=123.14 Aligned_cols=274 Identities=11% Similarity=0.021 Sum_probs=145.0
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
......+..++|..+.+..+.|.. ..+.++|+++||...... .|. .....|.++||.|+.+|+||.|......
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~~--~~~-~~a~~L~~~Gy~V~~~D~rGhG~S~~~~- 181 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAA---GEMRGILIIIHGLNEHSG--RYL-HFAKQLTSCGFGVYAMDWIGHGGSDGLH- 181 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCC---CCCceEEEEECCchHHHH--HHH-HHHHHHHHCCCEEEEeCCCCCCCCCCCC-
Confidence 345566778899999988888853 234679999999754321 233 2345566679999999999988543211
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC---ceeEEEEccCCCccccCcceeee
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD---LFGAAIVQVGNPEISDCGRWLIV 558 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~~~i~d~~~~~~~ 558 (1012)
+.........+|+...++++.... ...++.++|+|+||.+++.++. +|+ .+.++|..+| ...... .
T Consensus 182 --~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP---~l~~~~---~ 250 (395)
T PLN02652 182 --GYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP---ALRVKP---A 250 (395)
T ss_pred --CCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc---cccccc---c
Confidence 000011122456777777766431 2247999999999999887664 454 6788888777 110000 0
Q ss_pred ecccccccCcccccccCCCCccccc----CCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCC-ccc
Q psy1288 559 HTMKDCKNNMFHFCDLDTIPDRKIE----GKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYS-PLH 633 (1012)
Q Consensus 559 ~~~~~~~~~~~~~~dl~~~~~~~~~----~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~s-P~~ 633 (1012)
... ...+..+.+ ..++..... ...+++.. ........ ..... .-|........+.+.... ...
T Consensus 251 ~~~---~~~~~~l~~-~~~p~~~~~~~~~~~~~~s~~---~~~~~~~~---~dp~~--~~g~i~~~~~~~~~~~~~~l~~ 318 (395)
T PLN02652 251 HPI---VGAVAPIFS-LVAPRFQFKGANKRGIPVSRD---PAALLAKY---SDPLV--YTGPIRVRTGHEILRISSYLTR 318 (395)
T ss_pred hHH---HHHHHHHHH-HhCCCCcccCcccccCCcCCC---HHHHHHHh---cCCCc--ccCCchHHHHHHHHHHHHHHHh
Confidence 000 000000000 000000000 00011100 00000000 00000 000000000001000000 011
Q ss_pred CCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHH
Q psy1288 634 NIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVI 713 (1012)
Q Consensus 634 ~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~ 713 (1012)
.+ .++++| +|++||..|..+++..+.+++.++... ...++++++++|...... ...+.+.++.
T Consensus 319 ~L------~~I~vP-vLIi~G~~D~vvp~~~a~~l~~~~~~~---------~k~l~~~~ga~H~l~~e~-~~e~v~~~I~ 381 (395)
T PLN02652 319 NF------KSVTVP-FMVLHGTADRVTDPLASQDLYNEAASR---------HKDIKLYDGFLHDLLFEP-EREEVGRDII 381 (395)
T ss_pred hc------ccCCCC-EEEEEeCCCCCCCHHHHHHHHHhcCCC---------CceEEEECCCeEEeccCC-CHHHHHHHHH
Confidence 22 257889 999999999999999998888776432 346777899999864432 2335667788
Q ss_pred HHHHHhCCC
Q psy1288 714 YFYLTSGPV 722 (1012)
Q Consensus 714 ~fl~~~l~~ 722 (1012)
+|+..++..
T Consensus 382 ~FL~~~~~~ 390 (395)
T PLN02652 382 DWMEKRLDL 390 (395)
T ss_pred HHHHHHhhc
Confidence 999988753
|
|
| >KOG1552|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-10 Score=114.24 Aligned_cols=202 Identities=17% Similarity=0.202 Sum_probs=131.7
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHH-hCCeEEEEEcCCCCCCCchhHHh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLR-DFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
+-+..+..-|..+....+.|.. ...+++++.||... +.+-.......+. ..++.++..|++|.|..+..-.
T Consensus 36 ~v~~~~t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~---Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ps- 107 (258)
T KOG1552|consen 36 EVFKVKTSRGNEIVCMYVRPPE----AAHPTLLYSHGNAA---DLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGKPS- 107 (258)
T ss_pred ceEEeecCCCCEEEEEEEcCcc----ccceEEEEcCCccc---chHHHHHHHHHHhhcccceEEEEecccccccCCCcc-
Confidence 3344455667777666666654 24689999999621 1111111112222 2379999999999875433322
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccc
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMK 562 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~ 562 (1012)
..+.++|+.++.+||.+..- .+++|.++|+|+|...++.++.+.| ..++|...| +++-
T Consensus 108 ------E~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SP---f~S~---------- 165 (258)
T KOG1552|consen 108 ------ERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSP---FTSG---------- 165 (258)
T ss_pred ------cccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEecc---chhh----------
Confidence 23678999999999998755 7899999999999999999999887 789999988 1110
Q ss_pred ccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCccc
Q psy1288 563 DCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELK 642 (1012)
Q Consensus 563 ~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~ 642 (1012)
+.-+ ..- .. -..|.+.| +-...++
T Consensus 166 -----------~rv~------------------~~~----~~--~~~~~d~f---------------~~i~kI~------ 189 (258)
T KOG1552|consen 166 -----------MRVA------------------FPD----TK--TTYCFDAF---------------PNIEKIS------ 189 (258)
T ss_pred -----------hhhh------------------ccC----cc--eEEeeccc---------------cccCcce------
Confidence 0000 000 00 00122222 1134444
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~ 702 (1012)
.+++| +|++||..|..+++.++.+++...+.+ ++-.+..++||....-.
T Consensus 190 ~i~~P-VLiiHgtdDevv~~sHg~~Lye~~k~~----------~epl~v~g~gH~~~~~~ 238 (258)
T KOG1552|consen 190 KITCP-VLIIHGTDDEVVDFSHGKALYERCKEK----------VEPLWVKGAGHNDIELY 238 (258)
T ss_pred eccCC-EEEEecccCceecccccHHHHHhcccc----------CCCcEEecCCCcccccC
Confidence 67899 999999999999999999888876654 33444568888765433
|
|
| >KOG1515|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-09 Score=116.93 Aligned_cols=246 Identities=16% Similarity=0.153 Sum_probs=147.3
Q ss_pred CceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC---CCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 413 GTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL---QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 413 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~---~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
...|...+|.|.......+.|+||++|||..... .+.|+..........+.+|+.+|||-..+ ...
T Consensus 71 ~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE-----------h~~ 139 (336)
T KOG1515|consen 71 FTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE-----------HPF 139 (336)
T ss_pred CCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC-----------CCC
Confidence 4567889999987655478999999999864433 33444333334456699999999997553 344
Q ss_pred cchHhHHHHHHHHHHHc----CCCCCCcEEEEecChHHHHHHHHHhhC------CCceeEEEEccCCCccccCcceeeee
Q psy1288 490 QNVFDDFQCAAEYLIAS----GYTQSSRLAIQGGSNGGLLTAACINQR------PDLFGAAIVQVGNPEISDCGRWLIVH 559 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~~i~d~~~~~~~~ 559 (1012)
...++|..+++.|+.++ ...|++|++|+|.|+||.++..++.+. +-..++.|...| +.
T Consensus 140 Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P---~~--------- 207 (336)
T KOG1515|consen 140 PAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYP---FF--------- 207 (336)
T ss_pred CccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEec---cc---------
Confidence 56689999999999886 458999999999999999987765442 235678888888 11
Q ss_pred cccccccCcccccccCCCCcccccCCCC-cchhhhhhhhhhhcccccccc-ccccccCCCCChHHHHHHHcCCcccCCCC
Q psy1288 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLP-LTQVVHKVLDMLKFNKFTIGY-FWESDYGSPANSSQFEYLLGYSPLHNIQG 637 (1012)
Q Consensus 560 ~~~~~~~~~~~~~dl~~~~~~~~~~~~p-lt~~~~~~~d~~~~~~~~~g~-~~~~~~g~p~~~~~~~~~~~~sP~~~~~~ 637 (1012)
+.......- ...+. ...+ ++.. ..++.-......+. .+...| ..|..+..
T Consensus 208 ---~~~~~~~~e--~~~~~-----~~~~~~~~~---~~~~~w~~~lP~~~~~~~~p~--------------~np~~~~~- 259 (336)
T KOG1515|consen 208 ---QGTDRTESE--KQQNL-----NGSPELARP---KIDKWWRLLLPNGKTDLDHPF--------------INPVGNSL- 259 (336)
T ss_pred ---CCCCCCCHH--HHHhh-----cCCcchhHH---HHHHHHHHhCCCCCCCcCCcc--------------cccccccc-
Confidence 100000000 00000 0000 0000 11110000000000 000000 11221100
Q ss_pred CCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccchhhhhHHHH
Q psy1288 638 PDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQFPLTIPVIY 714 (1012)
Q Consensus 638 p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~~~~~~~~~~ 714 (1012)
........+|++|++.++.|... .++..+.++|+.+ |..+++..+.++.|++.--. ....+.+..+.+
T Consensus 260 ~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lkk~-------Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~ 330 (336)
T KOG1515|consen 260 AKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLKKA-------GVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVE 330 (336)
T ss_pred ccCccccCCCceEEEEeCchhhh--hhhHHHHHHHHHc-------CCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHH
Confidence 00113677888999999988654 6888899999988 99999999999999974321 233455555566
Q ss_pred HHHH
Q psy1288 715 FYLT 718 (1012)
Q Consensus 715 fl~~ 718 (1012)
|+..
T Consensus 331 fi~~ 334 (336)
T KOG1515|consen 331 FIKS 334 (336)
T ss_pred HHhh
Confidence 6654
|
|
| >KOG2281|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-11 Score=131.02 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=140.4
Q ss_pred CCCCCcEEEEeeCCCCCCCh-HHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc---------hhhhhHH
Q psy1288 643 GKQYPATLLMTADHDDRVSP-VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ---------FPLTIPV 712 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~-~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~---------~~~~~~~ 712 (1012)
++|||.+|.+-|+ |.|.. -++++....|+-.. -.+.+++++.+..+|+-.-|..+... +++..+.
T Consensus 639 gkkYptvl~VYGG--P~VQlVnnsfkgi~ylR~~~---LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeg 713 (867)
T KOG2281|consen 639 GKKYPTVLNVYGG--PGVQLVNNSFKGIQYLRFCR---LASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEG 713 (867)
T ss_pred CCCCceEEEEcCC--CceEEeeccccceehhhhhh---hhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHH
Confidence 7899999999999 54443 23444443333210 01167887777777654444333221 5677788
Q ss_pred HHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCcc-cCC
Q psy1288 713 IYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWES-DYG 784 (1012)
Q Consensus 713 ~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~g 784 (1012)
+.||.+..+ +.|.++++ ||||| ||.++.+++++|++|.| +|+||.-|-. . +.+ ..|
T Consensus 714 lq~Laeq~g----fidmdrV~vhGWSYG-------GYLSlm~L~~~P~IfrvAIAGapVT~W~~YDT----g-YTERYMg 777 (867)
T KOG2281|consen 714 LQMLAEQTG----FIDMDRVGVHGWSYG-------GYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDT----G-YTERYMG 777 (867)
T ss_pred HHHHHHhcC----cccchheeEeccccc-------cHHHHHHhhcCcceeeEEeccCcceeeeeecc----c-chhhhcC
Confidence 888887754 56677776 99999 99999999999999966 6888865521 1 223 348
Q ss_pred CCCChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q psy1288 785 SPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAG 864 (1012)
Q Consensus 785 ~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g 864 (1012)
-|++.|+ .+.+-|=+.+|. ++++. -.-+|++||--|-.|+-.+.--++.+|-++|. |-++++||+|-
T Consensus 778 ~P~~nE~--gY~agSV~~~Ve---klpde-pnRLlLvHGliDENVHF~Hts~Lvs~lvkagK-------pyeL~IfP~ER 844 (867)
T KOG2281|consen 778 YPDNNEH--GYGAGSVAGHVE---KLPDE-PNRLLLVHGLIDENVHFAHTSRLVSALVKAGK-------PYELQIFPNER 844 (867)
T ss_pred CCccchh--cccchhHHHHHh---hCCCC-CceEEEEecccccchhhhhHHHHHHHHHhCCC-------ceEEEEccccc
Confidence 8865443 245667777777 22221 13489999999999999999999999999877 99999999999
Q ss_pred CCCCCCchhhh
Q psy1288 865 HGGGKPTTKQL 875 (1012)
Q Consensus 865 H~~~~~~~~~~ 875 (1012)
|+++++..++.
T Consensus 845 HsiR~~es~~~ 855 (867)
T KOG2281|consen 845 HSIRNPESGIY 855 (867)
T ss_pred cccCCCccchh
Confidence 99998755443
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=126.57 Aligned_cols=133 Identities=22% Similarity=0.220 Sum_probs=92.5
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC-C--CC-CcChh---HHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS-L--QP-GFSVT---KIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~--~~-~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
||.+|.+.+++| +....++.|+||..++-.... . .. ...+. ....+.++||+|+..|.||.++.+..|...
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~- 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM- 78 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC-
Confidence 899999999999 445578999999988743211 0 00 00110 001155589999999999998876665432
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcc
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGR 554 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~ 554 (1012)
..+..+|..++++|+.++++.+ .+|+++|.|++|..++.++...|..++|++..++ ..|+..
T Consensus 79 ----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~---~~d~~~ 140 (272)
T PF02129_consen 79 ----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSG---WSDLYR 140 (272)
T ss_dssp ----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE----SBTCC
T ss_pred ----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEeccc---CCcccc
Confidence 4556789999999999997755 6999999999999999999877888899999888 666543
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-10 Score=115.79 Aligned_cols=190 Identities=16% Similarity=0.095 Sum_probs=107.0
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHH-HHHhCCeEEEEEcCCC---CCCCch---hHHhhhhcCCC-cchHhHHHHH--
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIV-FLRDFNGIYAIPNIRG---GGEYGE---RWHDGGRLLNK-QNVFDDFQCA-- 499 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~RG---~g~~g~---~~~~~~~~~~~-~~~~~D~~a~-- 499 (1012)
...|+||++||-.... ..+ ..... .+......+++++-.- ....|. .|.+....... ....+++..+
T Consensus 12 ~~~~lvi~LHG~G~~~--~~~-~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 12 KAKPLVILLHGYGDSE--DLF-ALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp T-SEEEEEE--TTS-H--HHH-HHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCceEEEEECCCCCCc--chh-HHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 5678999999953322 111 11111 1112356666665321 111223 67653322111 1122233222
Q ss_pred -HHHHHHc---CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccC
Q psy1288 500 -AEYLIAS---GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLD 575 (1012)
Q Consensus 500 -~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~ 575 (1012)
+..+++. ..++++||++.|.|.||.+++.++.+.|..+.++++.+| +.
T Consensus 89 ~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG-------------------------~~--- 140 (216)
T PF02230_consen 89 RLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSG-------------------------YL--- 140 (216)
T ss_dssp HHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES-------------------------------
T ss_pred HHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeec-------------------------cc---
Confidence 2222221 238999999999999999999999999999999999988 10
Q ss_pred CCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeC
Q psy1288 576 TIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTAD 655 (1012)
Q Consensus 576 ~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~ 655 (1012)
|.. ..+. .... ...+.| +|++||.
T Consensus 141 -----------~~~----------------------~~~~-----------------~~~~-----~~~~~p-i~~~hG~ 164 (216)
T PF02230_consen 141 -----------PPE----------------------SELE-----------------DRPE-----ALAKTP-ILIIHGD 164 (216)
T ss_dssp -----------TTG----------------------CCCH-----------------CCHC-----CCCTS--EEEEEET
T ss_pred -----------ccc----------------------cccc-----------------cccc-----ccCCCc-EEEEecC
Confidence 000 0000 0001 012455 9999999
Q ss_pred CCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 656 HDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 656 ~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
.|+.+|+..+.+....|+++ +..+.+..|+++||.... +++.++.+||.++
T Consensus 165 ~D~vvp~~~~~~~~~~L~~~-------~~~v~~~~~~g~gH~i~~------~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 165 EDPVVPFEWAEKTAEFLKAA-------GANVEFHEYPGGGHEISP------EELRDLREFLEKH 215 (216)
T ss_dssp T-SSSTHHHHHHHHHHHHCT-------T-GEEEEEETT-SSS--H------HHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHhc-------CCCEEEEEcCCCCCCCCH------HHHHHHHHHHhhh
Confidence 99999999999999999998 789999999999998743 5667778899876
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=129.75 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=97.3
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
++.||.+|.+.++.|++ .++.|+||++||...... ...+......++.++||+|+.+|+||.|.....+...
T Consensus 2 ~~~DG~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~---- 74 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL---- 74 (550)
T ss_pred cCCCCCEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec----
Confidence 46799999999999975 357899999997533211 0112222234566689999999999988765443211
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.....+|+.++++|+.++.+.+ .+|+++|+|+||.+++.++...|+.+++++..++
T Consensus 75 -~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~ 130 (550)
T TIGR00976 75 -GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEG 130 (550)
T ss_pred -CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCc
Confidence 1346789999999999988766 6999999999999999999888889999999887
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-09 Score=117.67 Aligned_cols=249 Identities=14% Similarity=0.141 Sum_probs=150.7
Q ss_pred CCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCC--CCCC--------C-ceEeeeEEECCCCcEEEEEE
Q psy1288 107 KYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNN--LSDD--------G-TVSLGSYSFSEDGKTLAYCL 175 (1012)
Q Consensus 107 ~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~--la~~--------g-~~~i~~~~~SPDGk~iAy~~ 175 (1012)
....++|+|++++|+++ ..||+++..++.+.+||.-.. +..+ + ...-..+.|||||++|||..
T Consensus 46 ~~~~~sP~g~~~~~v~~------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 46 QDAKWSPDGKYIAFVRD------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SEEEE-SSSTEEEEEET------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccceeecCCCeeEEEec------CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 34455699999999984 369999888888888876320 0000 0 11235788999999999986
Q ss_pred eCC-----------------------------C--CceEEEEEEECCCCceeceeec------ceeeeeeEEeeCCCeEE
Q psy1288 176 SSS-----------------------------G--SDWTSMHFKDVATGKEYPEVLH------RLKFVSIAWTHDHKGVF 218 (1012)
Q Consensus 176 ~~~-----------------------------G--~~~~~L~v~dl~tg~~~~~t~~------~~~~~~~~WSpDG~~l~ 218 (1012)
-.. | +....|+|+|+++++....... ..-...+.|++|++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 422 1 1235899999999986432222 22357899999999787
Q ss_pred EEec-CCCCCcc---cCC-CCCceEEEEeeccc--cceeeeee-ecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEe
Q psy1288 219 YSNQ-EPKSKSK---KHS-KKNRSSAYHLTVNV--APITSQYI-TNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTL 290 (1012)
Q Consensus 219 y~~~-~~~~~g~---~~~-~~~~~l~~~~~~~~--~~i~~~~~-s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l 290 (1012)
+... +...... .+. ....++++.+..+. .......+ .++++.+++++.+++ ..+||.++.+++. .+.|
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G-~~hly~~~~~~~~---~~~l 275 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG-YRHLYLYDLDGGK---PRQL 275 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS-SEEEEEEETTSSE---EEES
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC-CcEEEEEcccccc---eecc
Confidence 7753 3211000 010 01222333222111 11112223 488999999988654 7899999998765 3444
Q ss_pred eccCCCceeeeeEEe-cCCEEEEEEEcC--ceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCc
Q psy1288 291 IEENKDDVLDWATCV-ANDKLILSYIHH--VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPT 366 (1012)
Q Consensus 291 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~--g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~ 366 (1012)
+ ..+..+.+...+. +++.|++....+ ...+||+++++++...+.|+...+....+++||+++.++..++++..|+
T Consensus 276 T-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 276 T-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp S--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred c-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 4 4445554433333 346888877763 4689999999624445677755332246788999999999999988874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4391|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-09 Score=105.74 Aligned_cols=236 Identities=16% Similarity=0.173 Sum_probs=149.5
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
.++..+++...++|..++.++.+.. ....|+++++|+..+... .+-+...-+....+..|+.+++||-|..-.
T Consensus 50 ~n~pye~i~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmG--hr~~i~~~fy~~l~mnv~ivsYRGYG~S~G 122 (300)
T KOG4391|consen 50 FNMPYERIELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMG--HRLPIARVFYVNLKMNVLIVSYRGYGKSEG 122 (300)
T ss_pred cCCCceEEEEEcCcceeEeeeeecc-----cCCCceEEEEccCCCccc--chhhHHHHHHHHcCceEEEEEeeccccCCC
Confidence 3566789999999999999998873 247899999999755332 222222233445699999999999764322
Q ss_pred hHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeee
Q psy1288 479 RWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIV 558 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~ 558 (1012)
.-.+.| ..-|..++++||..+...|..+|.++|.|.||..+..++....++..|++....
T Consensus 123 spsE~G-------L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENT------------- 182 (300)
T KOG4391|consen 123 SPSEEG-------LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENT------------- 182 (300)
T ss_pred Cccccc-------eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeech-------------
Confidence 222221 134889999999999999999999999999999988888887788888887654
Q ss_pred ecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCC
Q psy1288 559 HTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGP 638 (1012)
Q Consensus 559 ~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p 638 (1012)
|.. +|.- .+|+... +.+ ++ ...| .++ -.+..+..+.
T Consensus 183 ------------F~S---Ip~~----~i~~v~p----~~~-k~---------i~~l-------c~k--n~~~S~~ki~-- 218 (300)
T KOG4391|consen 183 ------------FLS---IPHM----AIPLVFP----FPM-KY---------IPLL-------CYK--NKWLSYRKIG-- 218 (300)
T ss_pred ------------hcc---chhh----hhheecc----chh-hH---------HHHH-------HHH--hhhcchhhhc--
Confidence 211 1100 0111000 000 00 0000 000 0112222333
Q ss_pred CcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHH
Q psy1288 639 DELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLT 718 (1012)
Q Consensus 639 ~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~ 718 (1012)
..+.| +|++.|..|..||+.+-.+++..--.. ...+..||++.|.-.-- ....+..+-+||.+
T Consensus 219 ----~~~~P-~LFiSGlkDelVPP~~Mr~Ly~~c~S~---------~Krl~eFP~gtHNDT~i---~dGYfq~i~dFlaE 281 (300)
T KOG4391|consen 219 ----QCRMP-FLFISGLKDELVPPVMMRQLYELCPSR---------TKRLAEFPDGTHNDTWI---CDGYFQAIEDFLAE 281 (300)
T ss_pred ----cccCc-eEEeecCccccCCcHHHHHHHHhCchh---------hhhheeCCCCccCceEE---eccHHHHHHHHHHH
Confidence 46778 999999999999998876666543322 34688999999964221 11233344478887
Q ss_pred hCCC
Q psy1288 719 SGPV 722 (1012)
Q Consensus 719 ~l~~ 722 (1012)
....
T Consensus 282 ~~~~ 285 (300)
T KOG4391|consen 282 VVKS 285 (300)
T ss_pred hccC
Confidence 7543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-07 Score=101.36 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=74.5
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC--CCceEEEEEEEC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS--GSDWTSMHFKDV 190 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~--G~~~~~L~v~dl 190 (1012)
..|+++.|+..+ .||..++..++.+.|+. +..-+..+++||||++|||+.-.- +....+||+++.
T Consensus 48 I~GD~IiFt~~D------dlWe~slk~g~~~ritS-------~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~ 114 (668)
T COG4946 48 IYGDRIIFTCCD------DLWEYSLKDGKPLRITS-------GLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPS 114 (668)
T ss_pred ccCcEEEEEech------HHHHhhhccCCeeEEec-------ccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeC
Confidence 459999998754 38888888898898887 445667899999999999954322 233458999999
Q ss_pred CCCceeceeecceeeee-eEEeeCCCeEEEEe
Q psy1288 191 ATGKEYPEVLHRLKFVS-IAWTHDHKGVFYSN 221 (1012)
Q Consensus 191 ~tg~~~~~t~~~~~~~~-~~WSpDG~~l~y~~ 221 (1012)
++|+.++.|.-+..++. +.|+|||+-|+++.
T Consensus 115 e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD 146 (668)
T COG4946 115 EDGEAKRITYFGRRFTRVAGWIPDGEIIVSTD 146 (668)
T ss_pred CCCcEEEEEEeccccceeeccCCCCCEEEEec
Confidence 99999998876655544 57999999888774
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-09 Score=116.66 Aligned_cols=133 Identities=15% Similarity=0.030 Sum_probs=79.3
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-----------------------CcChhHHHHHHhCCeE
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-----------------------GFSVTKIVFLRDFNGI 464 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-----------------------~~~~~~~~~l~~~G~~ 464 (1012)
+.+.||..|....+.|+ .+..+|+++||-.+..... .|...+...|.++||.
T Consensus 2 ~~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~ 76 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYS 76 (332)
T ss_pred ccCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCc
Confidence 45679999988887764 2456999999954333210 0223456677778999
Q ss_pred EEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc------------------CCCCCCcEEEEecChHHHHH
Q psy1288 465 YAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS------------------GYTQSSRLAIQGGSNGGLLT 526 (1012)
Q Consensus 465 v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~------------------~~~d~~~i~i~G~S~GG~l~ 526 (1012)
|+..|.||+|.....-...+........++|+...++.+.+. .+-....++++||||||.++
T Consensus 77 V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~ 156 (332)
T TIGR01607 77 VYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIA 156 (332)
T ss_pred EEEecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHH
Confidence 999999998854321000000001111224444444443321 11113468999999999999
Q ss_pred HHHHhhCCC--------ceeEEEEccC
Q psy1288 527 AACINQRPD--------LFGAAIVQVG 545 (1012)
Q Consensus 527 ~~~~~~~p~--------~f~a~v~~~~ 545 (1012)
...+...++ .+.++|..+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~i~g~i~~s~ 183 (332)
T TIGR01607 157 LRLLELLGKSNENNDKLNIKGCISLSG 183 (332)
T ss_pred HHHHHHhccccccccccccceEEEecc
Confidence 887754432 4677776666
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=111.26 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCceEEEEEEEeCCCCCCCCC-cEEEEEcCCCCCCCCCCc---C-hhHHHHH-HhCCeEEEEEcCCCCCCCchhHHhhhh
Q psy1288 412 DGTKIPMFILSRKGAQLDGNN-PCILYGYGGFAVSLQPGF---S-VTKIVFL-RDFNGIYAIPNIRGGGEYGERWHDGGR 485 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~-P~vv~~hGg~~~~~~~~~---~-~~~~~~l-~~~G~~v~~~d~RG~g~~g~~~~~~~~ 485 (1012)
-|.+|.+.++.|+++.+++++ |+++++||+........- + .....|+ .+-++.|+.|.+ ...+.+...
T Consensus 170 tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy------~~if~d~e~ 243 (387)
T COG4099 170 TGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQY------NPIFADSEE 243 (387)
T ss_pred cCceeeEEEecccccCCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccc------ccccccccc
Confidence 588999999999999999998 999999998654432210 0 0011111 112344555542 122211111
Q ss_pred cCCCcchHhHHHHHHH-HHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAE-YLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......-.+..+. -+.++..+|.+||.+.|.|.||+.+++++.+.|+.|+|++..+|
T Consensus 244 --~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG 302 (387)
T COG4099 244 --KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAG 302 (387)
T ss_pred --ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecC
Confidence 11111222333343 55566779999999999999999999999999999999999988
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-09 Score=102.75 Aligned_cols=145 Identities=18% Similarity=0.218 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCc
Q psy1288 434 CILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSR 513 (1012)
Q Consensus 434 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~ 513 (1012)
+||++||..... ..|. .....++++||.|+.+|+++.+..... .+....++++.... .++++
T Consensus 1 ~vv~~HG~~~~~--~~~~-~~~~~l~~~G~~v~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~ 62 (145)
T PF12695_consen 1 VVVLLHGWGGSR--RDYQ-PLAEALAEQGYAVVAFDYPGHGDSDGA--------------DAVERVLADIRAGY-PDPDR 62 (145)
T ss_dssp EEEEECTTTTTT--HHHH-HHHHHHHHTTEEEEEESCTTSTTSHHS--------------HHHHHHHHHHHHHH-CTCCE
T ss_pred CEEEECCCCCCH--HHHH-HHHHHHHHCCCEEEEEecCCCCccchh--------------HHHHHHHHHHHhhc-CCCCc
Confidence 478999986532 2233 334556667999999999987764111 13333444432221 28899
Q ss_pred EEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhh
Q psy1288 514 LAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVH 593 (1012)
Q Consensus 514 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~ 593 (1012)
|+++|+|+||.++..++.+. ..++++|+..+ +
T Consensus 63 i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~-------------------------~---------------------- 94 (145)
T PF12695_consen 63 IILIGHSMGGAIAANLAARN-PRVKAVVLLSP-------------------------Y---------------------- 94 (145)
T ss_dssp EEEEEETHHHHHHHHHHHHS-TTESEEEEESE-------------------------S----------------------
T ss_pred EEEEEEccCcHHHHHHhhhc-cceeEEEEecC-------------------------c----------------------
Confidence 99999999999999998887 67888888766 0
Q ss_pred hhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHH
Q psy1288 594 KVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQ 673 (1012)
Q Consensus 594 ~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~ 673 (1012)
+. .+. + ...+.| +|++||.+|..+++....++++++.
T Consensus 95 -----------------------~~-~~~------------~------~~~~~p-v~~i~g~~D~~~~~~~~~~~~~~~~ 131 (145)
T PF12695_consen 95 -----------------------PD-SED------------L------AKIRIP-VLFIHGENDPLVPPEQVRRLYEALP 131 (145)
T ss_dssp -----------------------SG-CHH------------H------TTTTSE-EEEEEETT-SSSHHHHHHHHHHHHC
T ss_pred -----------------------cc-hhh------------h------hccCCc-EEEEEECCCCcCCHHHHHHHHHHcC
Confidence 00 000 0 124456 9999999999998888887777665
Q ss_pred hhhccCCCCCCcEEEEEeCCCCCC
Q psy1288 674 EKLRDYPHQTNPLLIRIETKAGHG 697 (1012)
Q Consensus 674 ~~~~~~~~~~~~~~l~~~p~~gHg 697 (1012)
.+..+++.++++|+
T Consensus 132 ----------~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 132 ----------GPKELYIIPGAGHF 145 (145)
T ss_dssp ----------SSEEEEEETTS-TT
T ss_pred ----------CCcEEEEeCCCcCc
Confidence 35688999999995
|
... |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=105.10 Aligned_cols=271 Identities=18% Similarity=0.134 Sum_probs=146.0
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
+..+..+||..+-.....++. +...|+||..||-.+...++ |.......+.++||.++++|.||.++--.. .
T Consensus 51 re~v~~pdg~~~~ldw~~~p~---~~~~P~vVl~HGL~G~s~s~-y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~ 122 (345)
T COG0429 51 RERLETPDGGFIDLDWSEDPR---AAKKPLVVLFHGLEGSSNSP-YARGLMRALSRRGWLVVVFHFRGCSGEANT----S 122 (345)
T ss_pred eEEEEcCCCCEEEEeeccCcc---ccCCceEEEEeccCCCCcCH-HHHHHHHHHHhcCCeEEEEecccccCCccc----C
Confidence 334566777666544433222 35569999999977766666 655566677778999999999998753110 1
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHH-HHHHHHhhCCC--ceeEEEEccCCCccccCcceeeeecc
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGL-LTAACINQRPD--LFGAAIVQVGNPEISDCGRWLIVHTM 561 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~-l~~~~~~~~p~--~f~a~v~~~~~~~i~d~~~~~~~~~~ 561 (1012)
.........+|+..+++++.+... +.++.++|.|.||. ++..+....-+ +-++++...| .|+. ..++-|
T Consensus 123 p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P----~Dl~--~~~~~l 194 (345)
T COG0429 123 PRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAP----FDLE--ACAYRL 194 (345)
T ss_pred cceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCH----HHHH--HHHHHh
Confidence 111112234799999999988643 67899999999994 44444433212 2233333333 1110 000000
Q ss_pred ccccc-Cccc-----c----c--ccCCCCcccccCCCCcch-hh-hhhhhhhhccccccccccccccCCCCChHHHHHHH
Q psy1288 562 KDCKN-NMFH-----F----C--DLDTIPDRKIEGKLPLTQ-VV-HKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLL 627 (1012)
Q Consensus 562 ~~~~~-~~~~-----~----~--dl~~~~~~~~~~~~plt~-~~-~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~ 627 (1012)
..-.. .+++ + + .+..+ .+++|.+. .. ..+.....|+.... ...+|- ++..++++
T Consensus 195 ~~~~s~~ly~r~l~~~L~~~~~~kl~~l-----~~~~p~~~~~~ik~~~ti~eFD~~~T----ap~~Gf---~da~dYYr 262 (345)
T COG0429 195 DSGFSLRLYSRYLLRNLKRNAARKLKEL-----EPSLPGTVLAAIKRCRTIREFDDLLT----APLHGF---ADAEDYYR 262 (345)
T ss_pred cCchhhhhhHHHHHHHHHHHHHHHHHhc-----CcccCcHHHHHHHhhchHHhccceee----ecccCC---CcHHHHHH
Confidence 00000 0000 0 0 00000 12344331 00 00011111111000 011232 24567899
Q ss_pred cCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHh-hhccCCCCCCcEEEEEeCCCCCC-CCCcc--c
Q psy1288 628 GYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQE-KLRDYPHQTNPLLIRIETKAGHG-GGKPT--T 703 (1012)
Q Consensus 628 ~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~-~~~~~~~~~~~~~l~~~p~~gHg-~~~~~--~ 703 (1012)
..|++..++ +++.| +||||..+||.+++..-- ..+. . +..+++..-..|||- |-... .
T Consensus 263 ~aSs~~~L~------~Ir~P-tLii~A~DDP~~~~~~iP----~~~~~~-------np~v~l~~t~~GGHvGfl~~~~~~ 324 (345)
T COG0429 263 QASSLPLLP------KIRKP-TLIINAKDDPFMPPEVIP----KLQEML-------NPNVLLQLTEHGGHVGFLGGKLLH 324 (345)
T ss_pred hcccccccc------ccccc-eEEEecCCCCCCChhhCC----cchhcC-------CCceEEEeecCCceEEeccCcccc
Confidence 999998887 79999 999999999998864321 1222 2 556888888999994 32211 1
Q ss_pred cchhhhhHHHHHHHHhCC
Q psy1288 704 KQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l~ 721 (1012)
...-....+.+||+..++
T Consensus 325 ~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 325 PQMWLEQRILDWLDPFLE 342 (345)
T ss_pred chhhHHHHHHHHHHHHHh
Confidence 111233456677776543
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-08 Score=111.83 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=87.6
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
.++..+..+||..+....+.+.........|+||++||..+.... .|.......+.++||.|+++|.||.|+....
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~-~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~--- 146 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDD-SYVRHMLLRARSKGWRVVVFNSRGCADSPVT--- 146 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHCCCEEEEEecCCCCCCCCC---
Confidence 455567778998887544332211122346899999997665432 2322223334457999999999998754211
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc--eeEEEEccC
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL--FGAAIVQVG 545 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~~ 545 (1012)
..........+|+..+++++..+- ...++.++|+|+||.+++..+.++|+. +.++++.++
T Consensus 147 -~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~ 208 (388)
T PLN02511 147 -TPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCN 208 (388)
T ss_pred -CcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECC
Confidence 011112234678988999887652 235799999999999999999888875 566555543
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=102.03 Aligned_cols=124 Identities=23% Similarity=0.183 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCccccccc
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDL 574 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl 574 (1012)
.+.+.++.+..+..++++++.+.|.|+|+.+++.++.++|++|++++...| +
T Consensus 82 ~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g-------------------------~--- 133 (207)
T COG0400 82 KLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSG-------------------------M--- 133 (207)
T ss_pred HHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCC-------------------------c---
Confidence 344445555566668899999999999999999999999999999999888 1
Q ss_pred CCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEee
Q psy1288 575 DTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTA 654 (1012)
Q Consensus 575 ~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG 654 (1012)
+|+.. . +..+ ....| +|++||
T Consensus 134 -----------~~~~~-----------------------~----------------~~~~--------~~~~p-ill~hG 154 (207)
T COG0400 134 -----------LPLEP-----------------------E----------------LLPD--------LAGTP-ILLSHG 154 (207)
T ss_pred -----------CCCCC-----------------------c----------------cccc--------cCCCe-EEEecc
Confidence 01000 0 0001 23445 999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 655 DHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 655 ~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
..|+.||...+.++...|++. +..+....++ +||.... +++..+.+|+...
T Consensus 155 ~~Dpvvp~~~~~~l~~~l~~~-------g~~v~~~~~~-~GH~i~~------e~~~~~~~wl~~~ 205 (207)
T COG0400 155 TEDPVVPLALAEALAEYLTAS-------GADVEVRWHE-GGHEIPP------EELEAARSWLANT 205 (207)
T ss_pred CcCCccCHHHHHHHHHHHHHc-------CCCEEEEEec-CCCcCCH------HHHHHHHHHHHhc
Confidence 999999999999999999998 9999999998 9998764 4555566787654
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=111.29 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=83.3
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
+..+..+||..+......... .....|+||++||..+.... .+.......|.++||.|+++|+||.++.......
T Consensus 33 ~~~~~~~dg~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~-- 107 (324)
T PRK10985 33 WQRLELPDGDFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNS-PYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR-- 107 (324)
T ss_pred eeEEECCCCCEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcC-HHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc--
Confidence 344667899877543321111 23457899999997654322 2322334566778999999999997643211100
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc--eeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL--FGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~~ 545 (1012)
.......+|+..+++++.++- ...++.++|+|+||.+++..+.++++. +.+++..++
T Consensus 108 --~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~ 166 (324)
T PRK10985 108 --IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSA 166 (324)
T ss_pred --eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcC
Confidence 111223678888888888752 235799999999999877777665432 666666655
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=110.98 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=88.8
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
.+..+++.++-. |+.|++++..|++ +++.|+||.+-|--... ..+-..+...+..+|++++++|..|.|... .
T Consensus 162 ~~~i~~v~iP~e-g~~I~g~LhlP~~---~~p~P~VIv~gGlDs~q--eD~~~l~~~~l~~rGiA~LtvDmPG~G~s~-~ 234 (411)
T PF06500_consen 162 DYPIEEVEIPFE-GKTIPGYLHLPSG---EKPYPTVIVCGGLDSLQ--EDLYRLFRDYLAPRGIAMLTVDMPGQGESP-K 234 (411)
T ss_dssp SSEEEEEEEEET-TCEEEEEEEESSS---SS-EEEEEEE--TTS-G--GGGHHHHHCCCHHCT-EEEEE--TTSGGGT-T
T ss_pred CCCcEEEEEeeC-CcEEEEEEEcCCC---CCCCCEEEEeCCcchhH--HHHHHHHHHHHHhCCCEEEEEccCCCcccc-c
Confidence 345778877765 5899999999884 57889888865543222 222212223455689999999999987531 1
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
|- .......-..++++||...+++|.+||+++|.|+||+.+.+++..++++++++|+..+
T Consensus 235 ~~------l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga 294 (411)
T PF06500_consen 235 WP------LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGA 294 (411)
T ss_dssp T-------S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES-
T ss_pred CC------CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCc
Confidence 11 0011112345778999999999999999999999999999998777889999998866
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-09 Score=112.61 Aligned_cols=141 Identities=21% Similarity=0.227 Sum_probs=87.5
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC------------CCCCc---ChhHHHHHHhCCe
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS------------LQPGF---SVTKIVFLRDFNG 463 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~------------~~~~~---~~~~~~~l~~~G~ 463 (1012)
++|..|++.+...++..++++++.|++. .++.|.||.+||-.+.. ....+ .......|+++||
T Consensus 84 dGY~~EKv~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GY 161 (390)
T PF12715_consen 84 DGYTREKVEFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGY 161 (390)
T ss_dssp TTEEEEEEEE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTS
T ss_pred CCeEEEEEEEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCC
Confidence 4578889999888999999999999985 68899999998832111 00011 1123456778899
Q ss_pred EEEEEcCCCCCCCchhH-----------------HhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHH
Q psy1288 464 IYAIPNIRGGGEYGERW-----------------HDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLT 526 (1012)
Q Consensus 464 ~v~~~d~RG~g~~g~~~-----------------~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~ 526 (1012)
+|+++|..|-|+.+..- ...|....+...+ |...+++||..++.+|++||+++|+|+||+.+
T Consensus 162 Vvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~-ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a 240 (390)
T PF12715_consen 162 VVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAW-DDMRALDFLASLPEVDPDRIGCMGFSMGGYRA 240 (390)
T ss_dssp EEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHH-HHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHH
T ss_pred EEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHH-HHHHHHHHHhcCcccCccceEEEeecccHHHH
Confidence 99999999877654311 0111111122233 44568999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEEEc
Q psy1288 527 AACINQRPDLFGAAIVQ 543 (1012)
Q Consensus 527 ~~~~~~~p~~f~a~v~~ 543 (1012)
+.+++.. +++++.+..
T Consensus 241 ~~LaALD-dRIka~v~~ 256 (390)
T PF12715_consen 241 WWLAALD-DRIKATVAN 256 (390)
T ss_dssp HHHHHH--TT--EEEEE
T ss_pred HHHHHcc-hhhHhHhhh
Confidence 8888774 566776654
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-08 Score=103.47 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
+.|+||++||..+... .|.. ....+. +||.|+.+|.||.|...... .....++|....+..+++. .+
T Consensus 12 ~~~~iv~lhG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 12 DAPVVVLSSGLGGSGS--YWAP-QLDVLT-QRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCEEEEEcCCCcchh--HHHH-HHHHHH-hccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--hC
Confidence 4688999999755432 2322 345566 48999999999987543211 1112344444444434433 24
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..++.++|+|+||.+++.++.+.|+.++++|...+
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~ 113 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINA 113 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecC
Confidence 56899999999999999999888988888777655
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-07 Score=101.31 Aligned_cols=128 Identities=11% Similarity=0.030 Sum_probs=84.7
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
.+.+.. +|..|.+++..|.+. +.+.+|++|||....... .........|+++||.|+.+|+||.|.....
T Consensus 4 ~~~~~~-~~~~l~g~~~~p~~~----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~---- 74 (274)
T TIGR03100 4 ALTFSC-EGETLVGVLHIPGAS----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGE---- 74 (274)
T ss_pred eEEEEc-CCcEEEEEEEcCCCC----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC----
Confidence 344543 578899999988642 235677778775433211 1112234566668999999999998854211
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.........|+.++++++.+... ..+++.++|+|+||++++.++.. +..++++|...|
T Consensus 75 --~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p 132 (274)
T TIGR03100 75 --NLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNP 132 (274)
T ss_pred --CCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECC
Confidence 01112335788889988876521 23679999999999998887654 467888888876
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=107.40 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCCCCCCCcCh---hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSV---TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~---~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
.|.||++||...... .|.. .... +.+.||.|+++|.||.|........ . .......+|+.+.++.
T Consensus 30 ~~~ivllHG~~~~~~--~~~~~~~~~~~-l~~~~~~vi~~D~~G~G~S~~~~~~--~-~~~~~~~~~l~~~l~~------ 97 (282)
T TIGR03343 30 GEAVIMLHGGGPGAG--GWSNYYRNIGP-FVDAGYRVILKDSPGFNKSDAVVMD--E-QRGLVNARAVKGLMDA------ 97 (282)
T ss_pred CCeEEEECCCCCchh--hHHHHHHHHHH-HHhCCCEEEEECCCCCCCCCCCcCc--c-cccchhHHHHHHHHHH------
Confidence 467999999643322 2321 1223 3345999999999998754221100 0 0000112333333322
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.+++.++|+|+||.++..++.++|++++++|...+
T Consensus 98 l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 134 (282)
T TIGR03343 98 LDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGP 134 (282)
T ss_pred cCCCCeeEEEECchHHHHHHHHHhChHhhceEEEECC
Confidence 2457899999999999999999999999999888766
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=96.67 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=91.4
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc-----
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL----- 486 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~----- 486 (1012)
.|.+..++++.|.+.. .+.|+||++||+.+......-...+-.+.++.|+.|+.+| ++.+.|...+..
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~p 115 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFGP 115 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCCc
Confidence 5777889999999864 3449999999986543221112223345556699999994 233444322222
Q ss_pred ---CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 487 ---LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 487 ---~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+..++..+.+.+..|+.+.-+||.||+|.|.|+||.|+.+++..+|++|.++...++
T Consensus 116 ~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg 177 (312)
T COG3509 116 ADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAG 177 (312)
T ss_pred ccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeec
Confidence 23344556667777778888889999999999999999999999999999998887777
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.7e-08 Score=109.70 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=90.8
Q ss_pred CCCCceEEEEEECCCCceEEEEEEEeCCC-CCCCCCcEEEEEcCCCCCCCCCCcC---hhHHHHHHhCCeEEEEEcCCCC
Q psy1288 398 PSLFETKQVFYPSKDGTKIPMFILSRKGA-QLDGNNPCILYGYGGFAVSLQPGFS---VTKIVFLRDFNGIYAIPNIRGG 473 (1012)
Q Consensus 398 ~~~~~~~~v~~~s~DG~~i~~~l~~p~~~-~~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~d~RG~ 473 (1012)
..+|.+|+..++++||..|...-+.+... ....+.|.|++.||.......+... ......|+++||.|+.+|.||.
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 34678899999999999887765533221 1123467899999976544432221 1223356678999999999997
Q ss_pred CC-CchhHHhhh-hcCCC----cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC---ceeEEEEcc
Q psy1288 474 GE-YGERWHDGG-RLLNK----QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD---LFGAAIVQV 544 (1012)
Q Consensus 474 g~-~g~~~~~~~-~~~~~----~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~ 544 (1012)
+. .|....... ...|. .....|+.+.++++.+.. .+++.++|||+||.+++.++ .+|+ .++++++.+
T Consensus 119 ~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 119 RWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLC 194 (395)
T ss_pred ccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhc
Confidence 53 232211111 11011 122358899999987642 36899999999999988655 4566 355555555
Q ss_pred C
Q psy1288 545 G 545 (1012)
Q Consensus 545 ~ 545 (1012)
|
T Consensus 195 P 195 (395)
T PLN02872 195 P 195 (395)
T ss_pred c
Confidence 5
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-07 Score=101.74 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=79.8
Q ss_pred ceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchH
Q psy1288 414 TKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVF 493 (1012)
Q Consensus 414 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 493 (1012)
..+++.++.|.. .++.|+|+++||..... ..|. .....|+++||+|+.+|++|.+.. .....+
T Consensus 37 ~~~p~~v~~P~~---~g~~PvVv~lHG~~~~~--~~y~-~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 37 PPKPLLVATPSE---AGTYPVLLFLHGYLLYN--SFYS-QLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCceEEEEeCCC---CCCCCEEEEECCCCCCc--ccHH-HHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 457888999975 46789999999975432 1232 345567778999999998873211 011234
Q ss_pred hHHHHHHHHHHHc--------CCCCCCcEEEEecChHHHHHHHHHhhCCC-----ceeEEEEccC
Q psy1288 494 DDFQCAAEYLIAS--------GYTQSSRLAIQGGSNGGLLTAACINQRPD-----LFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~~ 545 (1012)
+|..+.++|+.+. ...++++++++|||+||.+++.++..+++ .+.+++...|
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldP 164 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDP 164 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecc
Confidence 4556666666642 23577899999999999999999988764 4566666655
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-08 Score=111.14 Aligned_cols=110 Identities=12% Similarity=0.027 Sum_probs=77.2
Q ss_pred cCCccccccCccceeeeccccccccchh-----hhcccccCCCCCCCCCCCcccCCCCCChhhhhHhHcCCCCCCCCCCC
Q psy1288 734 DGSENVRNQDQKLYYHYLGTDQKDDILI-----AEVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPN 808 (1012)
Q Consensus 734 GgS~g~~~~~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Sp~~~v~~~~ 808 (1012)
|.|.| ++.++.....+|++|. +|++|+..... ........+|.+. ++++.+.+.+|+.++.
T Consensus 149 G~S~G-------G~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~--~~~~~~d~~~~~~~~~--- 214 (283)
T PLN02442 149 GHSMG-------GHGALTIYLKNPDKYKSVSAFAPIANPINCPW--GQKAFTNYLGSDK--ADWEEYDATELVSKFN--- 214 (283)
T ss_pred EEChh-------HHHHHHHHHhCchhEEEEEEECCccCcccCch--hhHHHHHHcCCCh--hhHHHcChhhhhhhcc---
Confidence 88888 5555554445566554 35655432100 0000112345542 3466667888888887
Q ss_pred CCCCCCCCceEEEcccCCCCCCC-cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 809 ELKGKQYPATLLMTADHDDRVSP-VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 809 ~~~~~~~~p~l~~~g~~D~rv~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+|+||+||++|.+||. .++..|+++||+.|+ ++.+.++|+++|++.
T Consensus 215 ----~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~-------~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 215 ----DVSATILIDQGEADKFLKEQLLPENFEEACKEAGA-------PVTLRLQPGYDHSYF 264 (283)
T ss_pred ----ccCCCEEEEECCCCccccccccHHHHHHHHHHcCC-------CeEEEEeCCCCccHH
Confidence 7789999999999999997 479999999999988 999999999999875
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-07 Score=99.84 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=78.8
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
.+.+.+..-||.++..... ..+ +...|.||++||...... .|.. ....|.++||.|+++|.||.|......
T Consensus 21 ~~~~~~~~~~~~~~~i~y~-~~G---~~~~~~lvliHG~~~~~~--~w~~-~~~~L~~~gy~vi~~Dl~G~G~S~~~~-- 91 (302)
T PRK00870 21 PHYVDVDDGDGGPLRMHYV-DEG---PADGPPVLLLHGEPSWSY--LYRK-MIPILAAAGHRVIAPDLIGFGRSDKPT-- 91 (302)
T ss_pred ceeEeecCCCCceEEEEEE-ecC---CCCCCEEEEECCCCCchh--hHHH-HHHHHHhCCCEEEEECCCCCCCCCCCC--
Confidence 3445555545665442222 222 112468999999753322 3443 344566569999999999987532110
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
......+++....+..+++. .+.+++.++|||+||.++..++.++|+++.+++...+
T Consensus 92 ----~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 92 ----RREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred ----CcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 00112344544444444443 2345799999999999999999999999988887754
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-08 Score=107.41 Aligned_cols=62 Identities=24% Similarity=0.236 Sum_probs=51.0
Q ss_pred hHcCCCCCCCCCCCCCCCCC-CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 795 LLGYSPLHNIQGPNELKGKQ-YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~~-~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+++...+. ++ ..|+|++||++|..||+.++++++++|+.+|++ ..+.++.++++||++.
T Consensus 172 ~~~~~~~~~~~-------~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~-----~~~~~~~~~~~~H~~~ 234 (249)
T PRK10566 172 LAEWEVTHQLE-------QLADRPLLLWHGLADDVVPAAESLRLQQALRERGLD-----KNLTCLWEPGVRHRIT 234 (249)
T ss_pred HhhcChhhhhh-------hcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCC-----cceEEEecCCCCCccC
Confidence 34455555555 55 589999999999999999999999999998871 1489999999999985
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=100.42 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..|++|++||..... ..|.. ....|. .||.|+.+|.||.|..... .....+.++...+..+++. .+
T Consensus 12 ~~~~li~~hg~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~~--------~~~~~~~~~~~~~~~~i~~--~~ 77 (251)
T TIGR02427 12 GAPVLVFINSLGTDL--RMWDP-VLPALT-PDFRVLRYDKRGHGLSDAP--------EGPYSIEDLADDVLALLDH--LG 77 (251)
T ss_pred CCCeEEEEcCcccch--hhHHH-HHHHhh-cccEEEEecCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHH--hC
Confidence 468899999854332 23333 345566 5999999999998754211 1122455555555555543 23
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.+++.++.+.|+.+.+++...+
T Consensus 78 ~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~ 112 (251)
T TIGR02427 78 IERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNT 112 (251)
T ss_pred CCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccC
Confidence 46899999999999999999888888887776654
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=90.98 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=69.1
Q ss_pred CCCcEEEEEcCCC--CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC
Q psy1288 430 GNNPCILYGYGGF--AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507 (1012)
Q Consensus 430 ~~~P~vv~~hGg~--~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~ 507 (1012)
...|+.|.+|--+ +..+...-.......+.++|+.++.+|+||-|.....| +.+....+|..++++|+.++.
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------D~GiGE~~Da~aaldW~~~~h 99 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------DNGIGELEDAAAALDWLQARH 99 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------cCCcchHHHHHHHHHHHHhhC
Confidence 4567777776532 11221111223345566789999999999987654443 456677899999999999885
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCCCc
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRPDL 536 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 536 (1012)
.-.+ ...+.|.|+|+++++.++.+.|+.
T Consensus 100 p~s~-~~~l~GfSFGa~Ia~~la~r~~e~ 127 (210)
T COG2945 100 PDSA-SCWLAGFSFGAYIAMQLAMRRPEI 127 (210)
T ss_pred CCch-hhhhcccchHHHHHHHHHHhcccc
Confidence 4322 246789999999999998887653
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=104.42 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=102.1
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc--ChhHH---HHHHhCCeEEEEEcCCCCCC
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF--SVTKI---VFLRDFNGIYAIPNIRGGGE 475 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~---~~l~~~G~~v~~~d~RG~g~ 475 (1012)
+..+.+.++-+||++|..-+++|++ .++.|+++..+-.+-......+ ..... .+++.+||+|+..|.||.++
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~---~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~ 93 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG---AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGG 93 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC---CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccccc
Confidence 5567788999999999999999997 4889999988733222211111 11111 24555799999999999887
Q ss_pred CchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 476 YGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 476 ~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+.... . ...+|-.+.++|+.++++.+ .+|+.+|.|++|+..+++++..|.-.+|++...+
T Consensus 94 SeG~~~~~~----~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~ 157 (563)
T COG2936 94 SEGVFDPES----S-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEG 157 (563)
T ss_pred CCcccceec----c-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccc
Confidence 655543221 1 35678889999999999976 6899999999999999988887777788888877
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.7e-07 Score=91.90 Aligned_cols=87 Identities=18% Similarity=0.061 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCCCCCCCcChh-HHHHHHh--CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVT-KIVFLRD--FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~-~~~~l~~--~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
|.||++||-.+... .|... ...++.+ .++.|+.+|.+|.+ ++....+..++++-
T Consensus 2 p~illlHGf~ss~~--~~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSPR--SAKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCcc--hHHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHc--
Confidence 67999999654332 23322 2344543 27999999999742 12333444555442
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+++.++|+|+||.+++.++.++|. + +|...|
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~ 91 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNP 91 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECC
Confidence 23579999999999999999998883 3 344544
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=92.83 Aligned_cols=129 Identities=12% Similarity=0.041 Sum_probs=85.9
Q ss_pred EEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCC-cChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 406 VFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG-FSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 406 v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
+++.++.|. +.++++.|.+ .++.|+||++||......... .-......|+++||.|+.+|+||.|........
T Consensus 3 ~~l~~~~g~-~~~~~~~p~~---~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~-- 76 (266)
T TIGR03101 3 FFLDAPHGF-RFCLYHPPVA---VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAA-- 76 (266)
T ss_pred EEecCCCCc-EEEEEecCCC---CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccc--
Confidence 455666665 4456665654 244689999999543221111 111223456668999999999998754222111
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......+|+..+++++.+.+ ..+++++|+|+||.+++.++.++|+.+.++|...|
T Consensus 77 --~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P 132 (266)
T TIGR03101 77 --ARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQP 132 (266)
T ss_pred --CCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEecc
Confidence 011123478888888887653 46899999999999999999888999988888866
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=97.39 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=75.3
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+...||.+|.+....+ ...+.||++||+++.... ......+...+|.|+.+|.||.|..... ..
T Consensus 9 ~~~~~~~~l~y~~~g~------~~~~~lvllHG~~~~~~~----~~~~~~~~~~~~~vi~~D~~G~G~S~~~------~~ 72 (306)
T TIGR01249 9 LNVSDNHQLYYEQSGN------PDGKPVVFLHGGPGSGTD----PGCRRFFDPETYRIVLFDQRGCGKSTPH------AC 72 (306)
T ss_pred EEcCCCcEEEEEECcC------CCCCEEEEECCCCCCCCC----HHHHhccCccCCEEEEECCCCCCCCCCC------CC
Confidence 4455787776644311 113467889998654321 1122233335899999999997743211 00
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......|+.+.+..+.+. ...+++.++|+|+||.+++.++.++|++++++|....
T Consensus 73 ~~~~~~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~ 128 (306)
T TIGR01249 73 LEENTTWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGI 128 (306)
T ss_pred cccCCHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecc
Confidence 1112344555555555554 2346799999999999999999999998887776644
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=96.15 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+=|..+++||.+++.+++++|+|+|.|.||-+++.++...| .+.++|+.+|
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~p 54 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISP 54 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCC
Confidence 44778899999999999999999999999999999999988 6899999987
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.7e-07 Score=97.52 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=69.2
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||+++... .+......++.+.||.|+.+|.||.|...... .......++++...+..+++. .+.
T Consensus 25 ~~~vl~~hG~~g~~~--~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH--EYLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCeEEEEcCCCCccH--HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHH--cCC
Confidence 477888999865442 22223345566559999999999977532100 000012344555545555543 234
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++.++|+|+||.+++.++..+|+.+.+++...+
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSM 129 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecc
Confidence 5699999999999999999999999988887655
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-06 Score=94.12 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=73.7
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
+|.++.+... +..|.||++||.+.... .|... ...|.+++ .|+++|.||.|...... ...
T Consensus 15 ~g~~i~y~~~--------G~g~~vvllHG~~~~~~--~w~~~-~~~L~~~~-~via~D~~G~G~S~~~~--------~~~ 74 (295)
T PRK03592 15 LGSRMAYIET--------GEGDPIVFLHGNPTSSY--LWRNI-IPHLAGLG-RCLAPDLIGMGASDKPD--------IDY 74 (295)
T ss_pred CCEEEEEEEe--------CCCCEEEEECCCCCCHH--HHHHH-HHHHhhCC-EEEEEcCCCCCCCCCCC--------CCC
Confidence 6777665432 22368999999764432 34433 44566544 99999999987643210 012
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++....+..+++. ...+++.++|+|+||.+++.++.++|+++++++...+
T Consensus 75 ~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~ 126 (295)
T PRK03592 75 TFADHARYLDAWFDA--LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEA 126 (295)
T ss_pred CHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECC
Confidence 234444334444443 2336799999999999999999999999999888764
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-08 Score=104.84 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=51.6
Q ss_pred cCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCC-cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 797 GYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSP-VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 797 ~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
..||...++ ..+..+|+||.||++|++||. .|+.++.++|+++|+ +++++++|+++|+|..
T Consensus 198 ~~~~~~~~~-----~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~-------~v~~~~~~g~~H~f~~ 259 (275)
T TIGR02821 198 SYDASLLVA-----DGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQ-------ALTLRRQAGYDHSYYF 259 (275)
T ss_pred hcchHHHHh-----hcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCC-------CeEEEEeCCCCccchh
Confidence 446665554 124578999999999999999 799999999999988 9999999999999863
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-06 Score=99.42 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=76.8
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHH---hCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLR---DFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~---~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
.|.++.+....|.+. ...|.||++||..+... .|.......+. .++|.|+.+|.||.|..... ..
T Consensus 184 ~~~~l~~~~~gp~~~---~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p-------~~ 251 (481)
T PLN03087 184 SNESLFVHVQQPKDN---KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP-------AD 251 (481)
T ss_pred CCeEEEEEEecCCCC---CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC-------CC
Confidence 456777766666541 23468999999764432 33322212222 35999999999998754211 00
Q ss_pred CcchHhHHHHHH-HHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAA-EYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~-~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+++....+ ..+++. ...+++.++|+|+||.+++.++.++|+++++++...+
T Consensus 252 ~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~ 307 (481)
T PLN03087 252 SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAP 307 (481)
T ss_pred CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECC
Confidence 112344444444 234443 2346899999999999999999999999999888765
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=95.36 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=68.5
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||..+... .|.. ....|+ ++|.|+.+|+||.|...... .....++++...+..+++.- ..
T Consensus 28 ~~~vv~~hG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~i~~~--~~ 94 (278)
T TIGR03056 28 GPLLLLLHGTGASTH--SWRD-LMPPLA-RSFRVVAPDLPGHGFTRAPF-------RFRFTLPSMAEDLSALCAAE--GL 94 (278)
T ss_pred CCeEEEEcCCCCCHH--HHHH-HHHHHh-hCcEEEeecCCCCCCCCCcc-------ccCCCHHHHHHHHHHHHHHc--CC
Confidence 478999999754322 2332 345566 48999999999987532111 11234555555555555542 23
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.+++.++.+.|+++++++...+
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~ 128 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINA 128 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcC
Confidence 5789999999999999999999998887777655
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-06 Score=96.66 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=81.7
Q ss_pred EEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCC----eEEEEEcCCCCCCCch
Q psy1288 404 KQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFN----GIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 404 ~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~RG~g~~g~ 478 (1012)
+.+.+.|. -|....+++|.|+++. .+++|+|++.||......... ...+..+.+.| .+++.+|...+.....
T Consensus 181 ~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~~--~~~ld~li~~g~i~P~ivV~id~~~~~~R~~ 257 (411)
T PRK10439 181 KEIIWKSERLGNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMPV--WPALDSLTHRGQLPPAVYLLIDAIDTTHRSQ 257 (411)
T ss_pred EEEEEEccccCCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCCH--HHHHHHHHHcCCCCceEEEEECCCCcccccc
Confidence 44555553 4667788999998875 567999999999753322111 12233333346 4567777532111110
Q ss_pred hHHhhhhcCCCcchHhHHH--HHHHHHHHc--CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 479 RWHDGGRLLNKQNVFDDFQ--CAAEYLIAS--GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~--a~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
. ......+.+++ ..+-++.++ -..++++.+|+|.|+||+.++.++.++|++|.++++.+|
T Consensus 258 e-------l~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sg 321 (411)
T PRK10439 258 E-------LPCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSG 321 (411)
T ss_pred c-------CCchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEecc
Confidence 0 00111222222 112333333 236888999999999999999999999999999999998
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-06 Score=91.58 Aligned_cols=102 Identities=17% Similarity=0.022 Sum_probs=67.0
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
....|.||++||..+... .|.. ....|. .+|.|+.+|.||.|...... ..++++...-+..+++.
T Consensus 13 ~~~~~~iv~lhG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~s~~~~---------~~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 13 PHNNSPIVLVHGLFGSLD--NLGV-LARDLV-NDHDIIQVDMRNHGLSPRDP---------VMNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCEEEECCCCCchh--HHHH-HHHHHh-hCCeEEEECCCCCCCCCCCC---------CCCHHHHHHHHHHHHHH--
Confidence 345688999999765432 3333 234455 48999999999987543210 11233332222222322
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...+++.++|+|+||.+++.++.++|+++++++....
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~ 114 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEec
Confidence 2446799999999999999999999999988887643
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-05 Score=89.19 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=108.5
Q ss_pred CceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeeccee-eeeeEEeeCCCeEE
Q psy1288 140 GEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLK-FVSIAWTHDHKGVF 218 (1012)
Q Consensus 140 g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~-~~~~~WSpDG~~l~ 218 (1012)
-+..+||+....+ .........|.+||++|+|..+.+|. .+||++||++++.+|+|..... ..+..+||+++.|+
T Consensus 21 ~~VtrLT~~~~~~--h~~YF~~~~ft~dG~kllF~s~~dg~--~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 21 HRVTRLTPPDGHS--HRLYFYQNCFTDDGRKLLFASDFDGN--RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp -EEEE-S-TTS-E--E---TTS--B-TTS-EEEEEE-TTSS---EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEE
T ss_pred ceEEEecCCCCcc--cceeecCCCcCCCCCEEEEEeccCCC--cceEEEEcccCEEEECccCCCCCccceEEecCCCeEE
Confidence 3455677754221 12345678999999999999998775 4999999999999999876432 23578999999999
Q ss_pred EEecCCCCCcc-cCCCCCceEEEEeeccccceeeeee--ecCCCEEEEEECC------------------CCCCceEEEE
Q psy1288 219 YSNQEPKSKSK-KHSKKNRSSAYHLTVNVAPITSQYI--TNEGPQFVFKTNK------------------DAPNYRLITI 277 (1012)
Q Consensus 219 y~~~~~~~~g~-~~~~~~~~l~~~~~~~~~~i~~~~~--s~dg~~l~~~tn~------------------~~~~~~L~~~ 277 (1012)
|......-... .+.. ...++|..+..-.+ +..| ..|+..++..... ..+..+|+.+
T Consensus 97 Yv~~~~~l~~vdL~T~-e~~~vy~~p~~~~g--~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 97 YVKNGRSLRRVDLDTL-EERVVYEVPDDWKG--YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEETTTEEEEEETTT---EEEEEE--TTEEE--EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEECCCeEEEEECCcC-cEEEEEECCccccc--ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 98643111000 1111 23345544322111 2223 3455555443321 1245789999
Q ss_pred eCCCCcccCcEEeeccCCCceeeeeE--EecCCEEEEEEEc--Cc-eEEEEEEecCCCceeeeecC--CceEEEeecccc
Q psy1288 278 DFDNFAESNWKTLIEENKDDVLDWAT--CVANDKLILSYIH--HV-KNVMHLHDLASGKHLYTFPL--DVGTIVGFSGKK 350 (1012)
Q Consensus 278 dl~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~~--~g-~~~l~~~dl~~G~~~~~l~~--~~~~v~~~~~sp 350 (1012)
|+.+++ .+.++.+.. .+.-+. .++...|.++-.. +. ..+||.++.+ |...+.+.. +...+..--|++
T Consensus 174 dl~tG~---~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 174 DLKTGE---RKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp ETTT-----EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-T
T ss_pred ECCCCc---eeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccC
Confidence 999887 455555442 222222 2222344554332 12 3589999984 543333321 233344445899
Q ss_pred cCcEEEEEecCC-CCCcEEEEEeCCCCCCCCCCcceEEEEe
Q psy1288 351 KYSEIFYSFMSF-LQPTIIFHCNIPARVDPNSKLETSIFRE 390 (1012)
Q Consensus 351 dg~~l~~~~ss~-~~p~~l~~~d~~~~~~~~g~~~~~~l~~ 390 (1012)
||..|+|..... ....-|+.+|+ .++ +.+.+.+
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~-----~t~--~~~~~~~ 281 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDP-----DTG--ERRRLME 281 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-T-----TT----EEEEEE
T ss_pred CCCEEEEEeecCCCCceEEEeeCC-----CCC--CceEEEe
Confidence 999999865433 33446788888 466 4444443
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=95.52 Aligned_cols=115 Identities=17% Similarity=0.070 Sum_probs=74.2
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
+|.++.+.... + +...+.||++||...... .|... ...|. .+|.|+++|.||.|..... ....
T Consensus 10 ~~~~~~~~~~~--~---~~~~~plvllHG~~~~~~--~w~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~--------~~~~ 72 (276)
T TIGR02240 10 DGQSIRTAVRP--G---KEGLTPLLIFNGIGANLE--LVFPF-IEALD-PDLEVIAFDVPGVGGSSTP--------RHPY 72 (276)
T ss_pred CCcEEEEEEec--C---CCCCCcEEEEeCCCcchH--HHHHH-HHHhc-cCceEEEECCCCCCCCCCC--------CCcC
Confidence 67777665431 1 112356888999644332 34332 34455 4899999999998754211 0112
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++++...+..+++. .+.+++.++|+|+||.+++.++.++|++++..|...+
T Consensus 73 ~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~ 124 (276)
T TIGR02240 73 RFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAAT 124 (276)
T ss_pred cHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEecc
Confidence 344444444444443 2346799999999999999999999999999888866
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=96.33 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||...... .|... ...|.. .+.|+++|.||.|.....-... ........++|+...+..+++.- ..
T Consensus 29 ~~~vlllHG~~~~~~--~w~~~-~~~L~~-~~~vi~~DlpG~G~S~~~~~~~-~~~~~~~~~~~~a~~l~~~l~~l--~~ 101 (294)
T PLN02824 29 GPALVLVHGFGGNAD--HWRKN-TPVLAK-SHRVYAIDLLGYGYSDKPNPRS-APPNSFYTFETWGEQLNDFCSDV--VG 101 (294)
T ss_pred CCeEEEECCCCCChh--HHHHH-HHHHHh-CCeEEEEcCCCCCCCCCCcccc-ccccccCCHHHHHHHHHHHHHHh--cC
Confidence 378999999765443 45443 344554 5799999999988543210000 00011234556555555555432 23
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~ 135 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINI 135 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECC
Confidence 6899999999999999999999999999998865
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.2e-07 Score=95.38 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=68.1
Q ss_pred EEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcE
Q psy1288 435 ILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRL 514 (1012)
Q Consensus 435 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i 514 (1012)
||++||..... ..|.. ....|+ +||.|+.+|.||.|...... ......+++....+..+++.- ..+++
T Consensus 1 vv~~hG~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~~--~~~~~ 68 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDP-LAEALA-RGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDAL--GIKKV 68 (228)
T ss_dssp EEEE-STTTTG--GGGHH-HHHHHH-TTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHHT--TTSSE
T ss_pred eEEECCCCCCH--HHHHH-HHHHHh-CCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhccccc--ccccc
Confidence 68899976544 34444 345565 69999999999977542211 011233445555554455442 22689
Q ss_pred EEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 515 AIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 515 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++|+|+||.+++.++.++|+.+++++...+
T Consensus 69 ~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~ 99 (228)
T PF12697_consen 69 ILVGHSMGGMIALRLAARYPDRVKGLVLLSP 99 (228)
T ss_dssp EEEEETHHHHHHHHHHHHSGGGEEEEEEESE
T ss_pred cccccccccccccccccccccccccceeecc
Confidence 9999999999999999999999999998877
|
... |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-06 Score=90.11 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=67.6
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHH-HHHHHHcCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA-AEYLIASGYTQS 511 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~-~~~l~~~~~~d~ 511 (1012)
|.||++||..+... .|.. ....|+ .|+.|+.+|.||.|..... .......+++.... +..+.+. .+.
T Consensus 2 ~~vv~~hG~~~~~~--~~~~-~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~ 69 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQA-LIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGI 69 (251)
T ss_pred CEEEEEcCCCCchh--hHHH-HHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCC
Confidence 67999999754333 3433 234555 6999999999997754211 11112233444433 3334333 245
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.++..++.++|+.+.+++...+
T Consensus 70 ~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~ 103 (251)
T TIGR03695 70 EPFFLVGYSMGGRIALYYALQYPERVQGLILESG 103 (251)
T ss_pred CeEEEEEeccHHHHHHHHHHhCchheeeeEEecC
Confidence 7899999999999999999999999988888766
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >KOG1838|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.5e-06 Score=91.76 Aligned_cols=137 Identities=16% Similarity=0.094 Sum_probs=89.6
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCC---CCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQ---LDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
.-++..+..+||..+..-.+.+.... .++..|+||.+||-.+.+.+. |-......+.++||.+++.|.||-++.--
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~-YVr~lv~~a~~~G~r~VVfN~RG~~g~~L 170 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHES-YVRHLVHEAQRKGYRVVVFNHRGLGGSKL 170 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhH-HHHHHHHHHHhCCcEEEEECCCCCCCCcc
Confidence 34566677788888887666544431 235679999999977666553 32223344556799999999999554311
Q ss_pred hHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC---CCceeEEEEccC
Q psy1288 479 RWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR---PDLFGAAIVQVG 545 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~~ 545 (1012)
. .....-...-+|+..+++++.++-- ..++.++|.|+||.+....+.+. ..+.+|+....|
T Consensus 171 t----Tpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~P 234 (409)
T KOG1838|consen 171 T----TPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNP 234 (409)
T ss_pred C----CCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEecc
Confidence 0 0111112234799999999988732 23699999999999988887654 235555555555
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=91.85 Aligned_cols=94 Identities=17% Similarity=0.067 Sum_probs=63.3
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
|.||++||..... ..|.. ....|. .++.|+.+|.||.|..... ....++++. +.+.+.. .+
T Consensus 5 ~~iv~~HG~~~~~--~~~~~-~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~---~~~~~~~---~~ 65 (245)
T TIGR01738 5 VHLVLIHGWGMNA--EVFRC-LDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAA---EAIAAQA---PD 65 (245)
T ss_pred ceEEEEcCCCCch--hhHHH-HHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHH---HHHHHhC---CC
Confidence 6789999964332 23432 344565 4899999999998753210 112233433 3333321 26
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.++|+|+||.+++.++.++|+++.++|...+
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~ 98 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVAS 98 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecC
Confidence 899999999999999999999998888887655
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >KOG4667|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=4e-06 Score=83.03 Aligned_cols=231 Identities=17% Similarity=0.148 Sum_probs=131.4
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
.+.|.++..-+.++.+.+.. .+..-++|.+||..... ...+....+..+++.|+.++.+|++|.|+....++-
T Consensus 10 ~~~ivi~n~~ne~lvg~lh~------tgs~e~vvlcHGfrS~K-n~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~ 82 (269)
T KOG4667|consen 10 AQKIVIPNSRNEKLVGLLHE------TGSTEIVVLCHGFRSHK-NAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYY 82 (269)
T ss_pred eeEEEeccCCCchhhcceec------cCCceEEEEeecccccc-chHHHHHHHHHHHhcCceEEEEEecCCCCcCCcccc
Confidence 34555666666666553322 24556899999964322 122333455667778999999999999987666654
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccc
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMK 562 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~ 562 (1012)
+ ......+|+..+++++... +..--.|.|||-||..++..+...++ ..-+|...| =+| .+.
T Consensus 83 G----n~~~eadDL~sV~q~~s~~---nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsG---Ryd--------l~~ 143 (269)
T KOG4667|consen 83 G----NYNTEADDLHSVIQYFSNS---NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSG---RYD--------LKN 143 (269)
T ss_pred C----cccchHHHHHHHHHHhccC---ceEEEEEEeecCccHHHHHHHHhhcC-chheEEccc---ccc--------hhc
Confidence 2 2233458998888887763 11223488999999999988888776 345566655 111 000
Q ss_pred ccccCccccccc-CCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCC--c-ccCCCCC
Q psy1288 563 DCKNNMFHFCDL-DTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYS--P-LHNIQGP 638 (1012)
Q Consensus 563 ~~~~~~~~~~dl-~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~s--P-~~~~~~p 638 (1012)
+ + +.+ +.. ...++....|..-..-...++.-..++....-+... + ...+
T Consensus 144 --------~--I~eRl-----------g~~---~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkI--- 196 (269)
T KOG4667|consen 144 --------G--INERL-----------GED---YLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKI--- 196 (269)
T ss_pred --------c--hhhhh-----------ccc---HHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCc---
Confidence 0 1 000 000 111111111110000001111111122111111111 0 1123
Q ss_pred CcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc
Q psy1288 639 DELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 639 ~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~ 702 (1012)
.+.|| ||-+||..|..||.+.+.++.+.+... .|.+.+++.|+|....
T Consensus 197 ----d~~C~-VLTvhGs~D~IVPve~AkefAk~i~nH-----------~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 197 ----DKQCR-VLTVHGSEDEIVPVEDAKEFAKIIPNH-----------KLEIIEGADHNYTGHQ 244 (269)
T ss_pred ----CccCc-eEEEeccCCceeechhHHHHHHhccCC-----------ceEEecCCCcCccchh
Confidence 37888 999999999999999998887776543 5888899999997643
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.9e-06 Score=89.02 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC-C
Q psy1288 434 CILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS-S 512 (1012)
Q Consensus 434 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~-~ 512 (1012)
+||++||..... ..|... ...|.+.||.|+.+|.||.|..... .....+++++...+..+++. ... .
T Consensus 5 ~vvllHG~~~~~--~~w~~~-~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~ 72 (255)
T PLN02965 5 HFVFVHGASHGA--WCWYKL-ATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDH 72 (255)
T ss_pred EEEEECCCCCCc--CcHHHH-HHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCC
Confidence 589999976433 245443 4556456999999999998854211 01122345555444444443 222 4
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.++|||+||.++..++.++|++++.+|...+
T Consensus 73 ~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~ 105 (255)
T PLN02965 73 KVILVGHSIGGGSVTEALCKFTDKISMAIYVAA 105 (255)
T ss_pred CEEEEecCcchHHHHHHHHhCchheeEEEEEcc
Confidence 899999999999999999999999988887655
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.8e-06 Score=94.74 Aligned_cols=103 Identities=11% Similarity=0.114 Sum_probs=67.4
Q ss_pred CcEEEEEcCCCCCCCCCCc--ChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchH--hHHHHHHHHHHHcC
Q psy1288 432 NPCILYGYGGFAVSLQPGF--SVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVF--DDFQCAAEYLIASG 507 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~--~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~--~D~~a~~~~l~~~~ 507 (1012)
.| |+.+||-......... .......|.++||.|+++|+||.+.... ......+ +|+.++++++.+..
T Consensus 63 ~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~--------~~~~~d~~~~~~~~~v~~l~~~~ 133 (350)
T TIGR01836 63 TP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADR--------YLTLDDYINGYIDKCVDYICRTS 133 (350)
T ss_pred Cc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHh--------cCCHHHHHHHHHHHHHHHHHHHh
Confidence 45 7777874211111111 1234566777899999999998653111 1111111 34667788887653
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+++.++|+|+||.+++.++..+|+.+++++..++
T Consensus 134 --~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~ 169 (350)
T TIGR01836 134 --KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVT 169 (350)
T ss_pred --CCCcccEEEECHHHHHHHHHHHhCchheeeEEEecc
Confidence 346899999999999999988888998888888766
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-06 Score=91.90 Aligned_cols=101 Identities=20% Similarity=0.103 Sum_probs=69.5
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||..... ..|.. ....|. ++|.|+.+|.||.|..... ......++++.+.+..+++.- +.
T Consensus 34 ~~~iv~lHG~~~~~--~~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~--~~ 100 (286)
T PRK03204 34 GPPILLCHGNPTWS--FLYRD-IIVALR-DRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDHL--GL 100 (286)
T ss_pred CCEEEEECCCCccH--HHHHH-HHHHHh-CCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHh--CC
Confidence 47899999975321 22332 234455 4899999999998754221 011123566777666666652 34
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.++..++..+|++++++|...+
T Consensus 101 ~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (286)
T PRK03204 101 DRYLSMGQDWGGPISMAVAVERADRVRGVVLGNT 134 (286)
T ss_pred CCEEEEEECccHHHHHHHHHhChhheeEEEEECc
Confidence 6799999999999999999889999998887644
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-06 Score=93.89 Aligned_cols=109 Identities=19% Similarity=0.131 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHH-------HhCCeEEEEEcCCCCCCCchhHHhhhh-cCCCcchHhHHHHHHHH-
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFL-------RDFNGIYAIPNIRGGGEYGERWHDGGR-LLNKQNVFDDFQCAAEY- 502 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l-------~~~G~~v~~~d~RG~g~~g~~~~~~~~-~~~~~~~~~D~~a~~~~- 502 (1012)
.|.||++||..+..... +...+...+ ...+|.|+.+|.||.|..... .... .......++++...+..
T Consensus 69 gpplvllHG~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p--~~~~~~~~~~~~~~~~a~~~~~~ 145 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSF-LSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKP--SDGLRAAFPRYDYDDMVEAQYRL 145 (360)
T ss_pred CCeEEEeCCCCCchhhh-ccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCC--CcCCCCCCCcccHHHHHHHHHHH
Confidence 47899999986543221 111222122 135899999999998753210 0000 00012345555543322
Q ss_pred HHHcCCCCCCcEE-EEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 503 LIASGYTQSSRLA-IQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 503 l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+.+. ..-+++. ++|+|+||.+++.++.++|+++.++|...+
T Consensus 146 l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s 187 (360)
T PRK06489 146 VTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMAS 187 (360)
T ss_pred HHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeecc
Confidence 3332 2335664 899999999999999999999999887755
|
|
| >KOG4627|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.8e-07 Score=87.12 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=113.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
...|+++++|||++...+.........-+.++||.|+++++--...- ..-..++.++..+++|+.+...
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q~----------htL~qt~~~~~~gv~filk~~~- 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQV----------HTLEQTMTQFTHGVNFILKYTE- 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCccc----------ccHHHHHHHHHHHHHHHHHhcc-
Confidence 45689999999987655444333333445568999999987543311 1112346788888998887632
Q ss_pred CCCcEEEEecChHHHHHHHHHhh-CCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCc
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQ-RPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPL 588 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~pl 588 (1012)
..+.|.+.|||+|+++++.++.+ +..++.+++..+| +++++...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~G---vY~l~EL~-------------------------------- 178 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCG---VYDLRELS-------------------------------- 178 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhh---HhhHHHHh--------------------------------
Confidence 44568899999999998877655 3346677777777 44422111
Q ss_pred chhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHH
Q psy1288 589 TQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKF 668 (1012)
Q Consensus 589 t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~ 668 (1012)
. .++|+-- +-.-+.....|+....- ...+.| +|++.|.+|.--.+++...|
T Consensus 179 --------------~--------te~g~dl-gLt~~~ae~~Scdl~~~-----~~v~~~-ilVv~~~~espklieQnrdf 229 (270)
T KOG4627|consen 179 --------------N--------TESGNDL-GLTERNAESVSCDLWEY-----TDVTVW-ILVVAAEHESPKLIEQNRDF 229 (270)
T ss_pred --------------C--------Ccccccc-CcccchhhhcCccHHHh-----cCceee-eeEeeecccCcHHHHhhhhH
Confidence 0 0111100 00000112223222111 256778 99999999998889999999
Q ss_pred HHHHHhhhccCCCCCCcEEEEEeCCCCCC
Q psy1288 669 AATLQEKLRDYPHQTNPLLIRIETKAGHG 697 (1012)
Q Consensus 669 ~~~L~~~~~~~~~~~~~~~l~~~p~~gHg 697 (1012)
..+++.+ .+..+++.+|-
T Consensus 230 ~~q~~~a-----------~~~~f~n~~hy 247 (270)
T KOG4627|consen 230 ADQLRKA-----------SFTLFKNYDHY 247 (270)
T ss_pred HHHhhhc-----------ceeecCCcchh
Confidence 9998776 46777877774
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-07 Score=101.26 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCC---CCCCCCCcChhHHHHHHhCC-eEEEEEcCCCCCCCc-hhHHhhh
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGF---AVSLQPGFSVTKIVFLRDFN-GIYAIPNIRGGGEYG-ERWHDGG 484 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~~l~~~G-~~v~~~d~RG~g~~g-~~~~~~~ 484 (1012)
|.|...| -++.|. ....+.|++||+|||. +....+.|+.. -|+++| ++|+.+|||-+- +| -.+....
T Consensus 76 sEDCL~L--NIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs---~La~~g~vVvVSvNYRLG~-lGfL~~~~~~ 147 (491)
T COG2272 76 SEDCLYL--NIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGS---ALAARGDVVVVSVNYRLGA-LGFLDLSSLD 147 (491)
T ss_pred cccceeE--EeeccC--CCCCCCcEEEEEeccccccCCCcccccChH---HHHhcCCEEEEEeCccccc-ceeeehhhcc
Confidence 5565444 455666 2356689999999983 44445556654 355567 999999999654 22 2222222
Q ss_pred --hcCCCcchHhHHHHHHHHHHHc---CCCCCCcEEEEecChHHHHHHHHHhhCCC---ceeEEEEccC
Q psy1288 485 --RLLNKQNVFDDFQCAAEYLIAS---GYTQSSRLAIQGGSNGGLLTAACINQRPD---LFGAAIVQVG 545 (1012)
Q Consensus 485 --~~~~~~~~~~D~~a~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~ 545 (1012)
........+.|++.+++|+.++ --.||+.|.|+|.|+|++.++.++.. |. +|+.+|+.+|
T Consensus 148 ~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg 215 (491)
T COG2272 148 TEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSG 215 (491)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCC
Confidence 1111124578999999999887 23799999999999999999888775 54 7888888877
|
|
| >KOG3043|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-06 Score=86.23 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=113.9
Q ss_pred HHHHHhCCeEEEEEcCCCCC----CC----chhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHH
Q psy1288 455 IVFLRDFNGIYAIPNIRGGG----EY----GERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLT 526 (1012)
Q Consensus 455 ~~~l~~~G~~v~~~d~RG~g----~~----g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~ 526 (1012)
...++..||.|++||+-.+- +. -..|.+ +......+.|+.+.++||..++ ++.+|+++|.++||-.+
T Consensus 60 Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~---~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~v 134 (242)
T KOG3043|consen 60 ADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMK---GHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVV 134 (242)
T ss_pred HHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHh---cCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEE
Confidence 44566679999999985541 11 122333 2223445789999999999654 57899999999999877
Q ss_pred HHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccccc
Q psy1288 527 AACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTI 606 (1012)
Q Consensus 527 ~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~ 606 (1012)
...+...| +|.+++...|
T Consensus 135 v~~~~~~~-~f~a~v~~hp------------------------------------------------------------- 152 (242)
T KOG3043|consen 135 VTLSAKDP-EFDAGVSFHP------------------------------------------------------------- 152 (242)
T ss_pred EEeeccch-hheeeeEecC-------------------------------------------------------------
Confidence 76666655 7888888877
Q ss_pred ccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcE
Q psy1288 607 GYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPL 686 (1012)
Q Consensus 607 g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~ 686 (1012)
++.+.++ +. +.++| +|++.|+.|..+|+.....+...|... + ....
T Consensus 153 ---------s~~d~~D------------~~------~vk~P-ilfl~ae~D~~~p~~~v~~~ee~lk~~----~--~~~~ 198 (242)
T KOG3043|consen 153 ---------SFVDSAD------------IA------NVKAP-ILFLFAELDEDVPPKDVKAWEEKLKEN----P--AVGS 198 (242)
T ss_pred ---------CcCChhH------------Hh------cCCCC-EEEEeecccccCCHHHHHHHHHHHhcC----c--ccce
Confidence 0011111 11 46788 999999999999999988888888765 1 2235
Q ss_pred EEEEeCCCCCCCCCccccc---------hhhhhHHHHHHHHhC
Q psy1288 687 LIRIETKAGHGGGKPTTKQ---------FPLTIPVIYFYLTSG 720 (1012)
Q Consensus 687 ~l~~~p~~gHg~~~~~~~~---------~~~~~~~~~fl~~~l 720 (1012)
.+.+|++-+|||...+.+. -+.+.+...|+.+++
T Consensus 199 ~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 199 QVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred eEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999997422221 234566677877664
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.9e-06 Score=93.60 Aligned_cols=106 Identities=17% Similarity=0.045 Sum_probs=65.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHH-HHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAA-EYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~-~~l~~~~~ 508 (1012)
+..|.||++||..+.. ..|... ...|.+ +|.|+.+|.||.|...+.... ........+.+...+ +++...
T Consensus 103 ~~~p~vvllHG~~~~~--~~~~~~-~~~L~~-~~~vi~~D~rG~G~S~~~~~~---~~~~~~~~~~~~~~i~~~~~~l-- 173 (402)
T PLN02894 103 EDAPTLVMVHGYGASQ--GFFFRN-FDALAS-RFRVIAIDQLGWGGSSRPDFT---CKSTEETEAWFIDSFEEWRKAK-- 173 (402)
T ss_pred CCCCEEEEECCCCcch--hHHHHH-HHHHHh-CCEEEEECCCCCCCCCCCCcc---cccHHHHHHHHHHHHHHHHHHc--
Confidence 3568999999975422 123332 344554 799999999998764321000 000000011122222 333222
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+..++.++|||+||++++.++.++|+.++++|...+
T Consensus 174 -~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p 209 (402)
T PLN02894 174 -NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGP 209 (402)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECC
Confidence 446899999999999999999999999998887765
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=92.00 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
|.||++||...... .|... ...|.+ +|.|+.+|.||.|..... . .....++++...+..+++. ...+
T Consensus 89 p~lvllHG~~~~~~--~w~~~-~~~L~~-~~~via~Dl~G~G~S~~~------~-~~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 89 PPVLLVHGFGASIP--HWRRN-IGVLAK-NYTVYAIDLLGFGASDKP------P-GFSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CeEEEECCCCCCHH--HHHHH-HHHHhc-CCEEEEECCCCCCCCCCC------C-CccccHHHHHHHHHHHHHH--hcCC
Confidence 67899999754332 34433 345664 899999999998754211 0 0112233444333333332 2346
Q ss_pred cEEEEecChHHHHHHHHHh-hCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACIN-QRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~ 545 (1012)
++.++|+|+||.+++.++. .+|++++++|...+
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~ 189 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNC 189 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECC
Confidence 8999999999999887776 46999999887765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.1e-05 Score=82.33 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=141.3
Q ss_pred CCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 107 KYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 107 ~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
.+|.|..-|+++||..+-. +..+||..+..+...+.-|+... + -.=..+-|||+|+|... | +||
T Consensus 227 ~vS~PmIV~~RvYFlsD~e--G~GnlYSvdldGkDlrrHTnFtd-----Y---Y~R~~nsDGkrIvFq~~--G----dIy 290 (668)
T COG4946 227 NVSSPMIVGERVYFLSDHE--GVGNLYSVDLDGKDLRRHTNFTD-----Y---YPRNANSDGKRIVFQNA--G----DIY 290 (668)
T ss_pred CcCCceEEcceEEEEeccc--CccceEEeccCCchhhhcCCchh-----c---cccccCCCCcEEEEecC--C----cEE
Confidence 5788889999999999865 34689999988777676666331 1 11245789999999753 3 799
Q ss_pred EEECCCCceeceeec-----ce---eeeee-----EEe-eCCCeEEEEecCCC-----CCcc-cCCCCCceEEEEe----
Q psy1288 187 FKDVATGKEYPEVLH-----RL---KFVSI-----AWT-HDHKGVFYSNQEPK-----SKSK-KHSKKNRSSAYHL---- 242 (1012)
Q Consensus 187 v~dl~tg~~~~~t~~-----~~---~~~~~-----~WS-pDG~~l~y~~~~~~-----~~g~-~~~~~~~~l~~~~---- 242 (1012)
++|.++.....+.+. .. .+..+ .++ -+|..|++++.... ..+. ........+-|..
T Consensus 291 lydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~ 370 (668)
T COG4946 291 LYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVD 370 (668)
T ss_pred EeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccC
Confidence 999888765443332 10 01110 133 26788887763211 1111 0000011111111
Q ss_pred -------------------e--------ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC
Q psy1288 243 -------------------T--------VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK 295 (1012)
Q Consensus 243 -------------------~--------~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~ 295 (1012)
. .+...++.-..+++|+.+++. | .++.|+.+|++++. .+++....
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-N---dr~el~vididngn----v~~idkS~ 442 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-N---DRFELWVIDIDNGN----VRLIDKSE 442 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-c---CceEEEEEEecCCC----eeEecccc
Confidence 0 001223344578888876654 3 36899999999887 45666666
Q ss_pred CceeeeeEEecCCEEEEEEEcCc--eEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCc
Q psy1288 296 DDVLDWATCVANDKLILSYIHHV--KNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPT 366 (1012)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~g--~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~ 366 (1012)
...+..+.+.++...+.-.-.+| ...|.++|.++++.. .++.| .... .++++||++.|+|......+|+
T Consensus 443 ~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy-~vTT~ta~Df-sPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 443 YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY-DVTTPTAYDF-SPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE-EecCCccccc-CcccCCCCcEEEEEeccccCCC
Confidence 66676676665333332222344 357889999766653 45555 3333 6788999999999888777764
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.1e-06 Score=93.75 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=70.0
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..|.||++||..+... .|... ...|. ++|.|+.+|.||.|..... .....+.++...+..+++. .+
T Consensus 130 ~~~~vl~~HG~~~~~~--~~~~~-~~~l~-~~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 130 DGTPVVLIHGFGGDLN--NWLFN-HAALA-AGRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCeEEEECCCCCccc--hHHHH-HHHHh-cCCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cC
Confidence 3578999998654332 23322 34455 4799999999998754211 1123455666555555543 45
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+.++.++|+|+||.++..++.++|+.+.+++...+
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~ 230 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAP 230 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECc
Confidence 67899999999999999998888988888887766
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-06 Score=95.29 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=69.7
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhh---cCC
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGR---LLN 488 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~---~~~ 488 (1012)
+|.+|.+...-+.. .++.|+|++.||..+......+.......+...+|.|+++|.||.|........... ...
T Consensus 24 ~~~~l~y~~~G~~~---~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~ 100 (339)
T PRK07581 24 PDARLAYKTYGTLN---AAKDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARF 100 (339)
T ss_pred CCceEEEEecCccC---CCCCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCC
Confidence 45556544432211 123467777776543332221110000134335899999999998854321100000 000
Q ss_pred CcchH-hHHHHHHHHHHHcCCCCCCcE-EEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVF-DDFQCAAEYLIASGYTQSSRL-AIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~-~D~~a~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+ +|+.+-...+.+. ...+++ .++|+|+||.+++.++.++|++++.+|...+
T Consensus 101 ~~~~~~~~~~~~~~~l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 101 PHVTIYDNVRAQHRLLTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred CceeHHHHHHHHHHHHHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 00112 3443323334442 233674 6899999999999999999999998887755
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.7e-07 Score=105.94 Aligned_cols=126 Identities=18% Similarity=0.123 Sum_probs=86.0
Q ss_pred EEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCC-eEEEEEcCC-CCCCCchhHHhhhhcCCCcchH
Q psy1288 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFN-GIYAIPNIR-GGGEYGERWHDGGRLLNKQNVF 493 (1012)
Q Consensus 416 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G-~~v~~~d~R-G~g~~g~~~~~~~~~~~~~~~~ 493 (1012)
+...++.|.......+.|+||++|||.......... ....+....+ ++|+.+|+| |..++...... ...+...+
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~~~n~g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---ELPGNYGL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCC---CCCcchhH
Confidence 344566776543456789999999985443333321 1223333334 999999999 55555332111 11223347
Q ss_pred hHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
.|+..+++|+.++- -.||++|.|+|+|+||.++..++.. .+.+|+++|+.+|
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg 211 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSG 211 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcC
Confidence 89999999998762 3799999999999999999888776 2458999998887
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=95.53 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=74.8
Q ss_pred CCeeeCCEEEEEEEc---CCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC-------C
Q psy1288 110 SPQRQGDHYFFFHNT---GLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS-------G 179 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~---~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~-------G 179 (1012)
..+|+|++++|+... .++....||+.+. +++.++++. +. .+..|+|||||++|+|..+.. .
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~-------g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLE-------GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeec-------CC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 346999999999862 2234679999886 455577766 33 378899999999999886531 1
Q ss_pred CceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEe
Q psy1288 180 SDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 180 ~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
....+||++++++|+..+ ... ...++++|||||++|+|+.
T Consensus 427 ~~~gql~~~~vd~ge~~~-~~~-g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-RVP-GPISELQLSRDGVRAAMII 466 (591)
T ss_pred CCCceEEEEeccCchhhh-ccC-CCcCeEEECCCCCEEEEEE
Confidence 123489999999988765 332 2368999999999999986
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=81.26 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=111.5
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC---------C
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS---------G 179 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~---------G 179 (1012)
++.+.||+++.|..+.. +..+||++++.+++.+||||... ....+..+||+.+.|.|..+.. .
T Consensus 41 ~~ft~dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g------~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGPG------DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp --B-TTS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS-------B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred CCcCCCCCEEEEEeccC--CCcceEEEEcccCEEEECccCCC------CCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence 45678999999987754 56899999999999999999321 1112356667777766654311 0
Q ss_pred ----------------------------------------------------CceEEEEEEECCCCceeceeecceeeee
Q psy1288 180 ----------------------------------------------------SDWTSMHFKDVATGKEYPEVLHRLKFVS 207 (1012)
Q Consensus 180 ----------------------------------------------------~~~~~L~v~dl~tg~~~~~t~~~~~~~~ 207 (1012)
...+.|+.+|+.||+.........-.+-
T Consensus 113 e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 113 EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 0013677777777765443222222345
Q ss_pred eEEee-CCCeEEEEecCCCCCcccCCCCCceEEEEeecc-----------ccceeeeeeecCCCEEEEEEC-CCCCCceE
Q psy1288 208 IAWTH-DHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN-----------VAPITSQYITNEGPQFVFKTN-KDAPNYRL 274 (1012)
Q Consensus 208 ~~WSp-DG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~-----------~~~i~~~~~s~dg~~l~~~tn-~~~~~~~L 274 (1012)
+.+|| |...|.|.-..+-. . -+++++.....+ ...+....|++||..|++.+- .+...+-|
T Consensus 193 ~~fsP~dp~li~fCHEGpw~-~-----Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWD-L-----VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TT-T-----SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred cccCCCCCCEEEEeccCCcc-e-----eceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 55665 45556665432110 0 011222221110 022335579999999998765 45557789
Q ss_pred EEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcC--------------ceEEEEEEecCCCceeeeecCC-
Q psy1288 275 ITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHH--------------VKNVMHLHDLASGKHLYTFPLD- 339 (1012)
Q Consensus 275 ~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~l~~~dl~~G~~~~~l~~~- 339 (1012)
+.+++.+++. +.+.+.+. ........+ +.|++.--.+ ...-|+++++..+.... +..-
T Consensus 267 ~~~d~~t~~~----~~~~~~p~-~~H~~ss~D-g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~ 339 (386)
T PF14583_consen 267 AGYDPDTGER----RRLMEMPW-CSHFMSSPD-GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHD 339 (386)
T ss_dssp EEE-TTT--E----EEEEEE-S-EEEEEE-TT-SSEEEEEE-------------------EEEEEETTTTEEEE-EEE--
T ss_pred EeeCCCCCCc----eEEEeCCc-eeeeEEcCC-CCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeecc
Confidence 9999988762 22222222 111111222 3333322111 12467778886554321 1100
Q ss_pred ----------ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 340 ----------VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 340 ----------~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.-.--.++||||++.|+|.++- .-++.||.+++
T Consensus 340 ~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i 382 (386)
T PF14583_consen 340 TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEI 382 (386)
T ss_dssp -----BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE-
T ss_pred CcceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeC
Confidence 0001246789999999998765 45678999987
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=92.33 Aligned_cols=111 Identities=18% Similarity=0.104 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCCCCCCC-----------CcChhH---HHHHHhCCeEEEEEcCCCCC--CCchhHHhh--hhc---CCCc
Q psy1288 432 NPCILYGYGGFAVSLQP-----------GFSVTK---IVFLRDFNGIYAIPNIRGGG--EYGERWHDG--GRL---LNKQ 490 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~-----------~~~~~~---~~~l~~~G~~v~~~d~RG~g--~~g~~~~~~--~~~---~~~~ 490 (1012)
.|.||++||..+..... .|...+ ..++. .+|.|+++|.+|+. ..+...... +.. ....
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~ 126 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-DRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPV 126 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-cceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCc
Confidence 58899999976544311 122211 12224 58999999999842 212111000 000 0113
Q ss_pred chHhHHHHHHHHHHHcCCCCCCc-EEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSR-LAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++|+...+..+++.- ..++ ..++|+|+||.+++.++.++|++++.+|...+
T Consensus 127 ~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 180 (379)
T PRK00175 127 ITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIAS 180 (379)
T ss_pred CCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECC
Confidence 45677776666666542 3356 47999999999999999999999998888765
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-06 Score=103.73 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=54.0
Q ss_pred HhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 794 YLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 794 ~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+|.+.+++.+++ +|+.|+|++||.+|.+|++.|+.++|.+|+++|+ |..+++.++ +|+....
T Consensus 441 fW~~rn~~~~~~-------kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~-------pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 441 FWDDRNYLKDAD-------KIKASVLVVHGLNDWNVKPKQVYQWWDALPENGV-------PKKLFLHQG-GHVYPNN 502 (767)
T ss_pred HHHhCCHhhHhh-------CCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCC-------CeEEEEeCC-CccCCCc
Confidence 456778999999 9999999999999999999999999999999988 888887754 7976543
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=90.29 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=77.5
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC---------CcChhH--HHHHHhCCeEEEEEcCCC--CCCCch
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP---------GFSVTK--IVFLRDFNGIYAIPNIRG--GGEYGE 478 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~---------~~~~~~--~~~l~~~G~~v~~~d~RG--~g~~g~ 478 (1012)
+|.+|.+..+-+.+ ....|.||++||-.+..... .|.... ...+...+|.|+++|.|| +|..+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 56677766654322 12346899999965432111 122211 012323689999999999 333222
Q ss_pred -hHHhhhhc---CCCcchHhHHHHHHHHHHHcCCCCCCc-EEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 479 -RWHDGGRL---LNKQNVFDDFQCAAEYLIASGYTQSSR-LAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 479 -~~~~~~~~---~~~~~~~~D~~a~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+...+.. .....+++|+...+..+++.- ..++ +.++|+|+||.+++.++.++|++++.+|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 160 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLAT 160 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEcc
Confidence 11111110 011234667766665555542 3456 88999999999999999999999998888766
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=88.41 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=55.8
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCC-CcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQT-NPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~-~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.+.| |++.||..|..||+....++++++.++ | ..+.+..++.++|.... .....+.++|+...+..
T Consensus 218 P~~P-v~i~~g~~D~vvP~~~~~~l~~~~c~~-------G~a~V~~~~~~~~~H~~~~-----~~~~~~a~~Wl~~rf~G 284 (290)
T PF03583_consen 218 PTVP-VLIYQGTADEVVPPADTDALVAKWCAA-------GGADVEYVRYPGGGHLGAA-----FASAPDALAWLDDRFAG 284 (290)
T ss_pred CCCC-EEEEecCCCCCCChHHHHHHHHHHHHc-------CCCCEEEEecCCCChhhhh-----hcCcHHHHHHHHHHHCC
Confidence 3567 999999999999999999999999998 8 69999999999997532 34456778999988765
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-05 Score=89.06 Aligned_cols=98 Identities=14% Similarity=-0.005 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc-hHhHHHHHHHHHHHcCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN-VFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~-~~~D~~a~~~~l~~~~~~d~ 511 (1012)
|.||++||..... ..|... ...|+ .+|.|+.+|++|.|....... ..... ..+|+.+.++.+. .
T Consensus 87 ~~vvliHG~~~~~--~~w~~~-~~~l~-~~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~ 151 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWRYN-IPELA-KKYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------K 151 (354)
T ss_pred CeEEEECCCCCCH--HHHHHH-HHHHh-cCCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------c
Confidence 5678999965432 233332 34455 489999999999876433210 01000 0123333333221 3
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||+++..++.++|+++++++...+
T Consensus 152 ~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 152 EPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 6789999999999999999999999998887654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00053 Score=75.57 Aligned_cols=235 Identities=12% Similarity=0.069 Sum_probs=122.3
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|+|+.+|..-... ..|++.+..+++....+.. + .....+.|+|||+.++.+...++ .|+++|+
T Consensus 38 ~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~------~-~~~~~~~~~~~g~~l~~~~~~~~----~l~~~d~ 102 (300)
T TIGR03866 38 LSKDGKLLYVCASDS----DTIQVIDLATGEVIGTLPS------G-PDPELFALHPNGKILYIANEDDN----LVTVIDI 102 (300)
T ss_pred ECCCCCEEEEEECCC----CeEEEEECCCCcEEEeccC------C-CCccEEEECCCCCEEEEEcCCCC----eEEEEEC
Confidence 457888766553221 3455556555543332221 1 12345789999998865543322 7999999
Q ss_pred CCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCC
Q psy1288 191 ATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAP 270 (1012)
Q Consensus 191 ~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~ 270 (1012)
.+++.............++|+|||+.+++........-..+... ..+....... .......|+++|+.|++.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--- 177 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVLVD-QRPRFAEFTADGKELWVSSEI--- 177 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEEcC-CCccEEEECCCCCEEEEEcCC---
Confidence 88765432111222356899999998887654311000000000 0111000000 112234589999988876543
Q ss_pred CceEEEEeCCCCcccCcEEeeccCC----C--ceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEE
Q psy1288 271 NYRLITIDFDNFAESNWKTLIEENK----D--DVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIV 344 (1012)
Q Consensus 271 ~~~L~~~dl~~~~~~~~~~l~~~~~----~--~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~ 344 (1012)
...+..+|+.+++. ...+..... . .........+++.+++....+ .++.+|++.+++....+... ..+.
T Consensus 178 ~~~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~~~-~~~~ 252 (300)
T TIGR03866 178 GGTVSVIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLLVG-QRVW 252 (300)
T ss_pred CCEEEEEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEEeC-CCcc
Confidence 24577788876541 112211110 0 011111223445555544332 46889999777654433222 2344
Q ss_pred eecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 345 GFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 345 ~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++|+|+++.|+.... .-..|.++|+
T Consensus 253 ~~~~~~~g~~l~~~~~---~~~~i~v~d~ 278 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNG---VSNDVSVIDV 278 (300)
T ss_pred eEEECCCCCEEEEEcC---CCCeEEEEEC
Confidence 6788999998765432 1236889998
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-05 Score=81.74 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=79.2
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHH
Q psy1288 417 PMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDF 496 (1012)
Q Consensus 417 ~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~ 496 (1012)
+..++.|.. .+.+|++++.||-. ....+-...++-+++.||+|+.++...-... ......+++
T Consensus 5 ~l~v~~P~~---~g~yPVv~f~~G~~---~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~-----------~~~~~~~~~ 67 (259)
T PF12740_consen 5 PLLVYYPSS---AGTYPVVLFLHGFL---LINSWYSQLLEHVASHGYIVVAPDLYSIGGP-----------DDTDEVASA 67 (259)
T ss_pred CeEEEecCC---CCCcCEEEEeCCcC---CCHHHHHHHHHHHHhCceEEEEecccccCCC-----------CcchhHHHH
Confidence 456777876 57899999999964 2223323346677889999999995442211 112234566
Q ss_pred HHHHHHHHHc---C-----CCCCCcEEEEecChHHHHHHHHHhhC-----CCceeEEEEccC
Q psy1288 497 QCAAEYLIAS---G-----YTQSSRLAIQGGSNGGLLTAACINQR-----PDLFGAAIVQVG 545 (1012)
Q Consensus 497 ~a~~~~l~~~---~-----~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~~ 545 (1012)
...++|+.+. . ..|-++|+++|||.||-++..++... +..|++++...|
T Consensus 68 ~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDP 129 (259)
T PF12740_consen 68 AEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDP 129 (259)
T ss_pred HHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecc
Confidence 7777887663 1 24778999999999999998887775 457999999888
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-05 Score=86.42 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=64.4
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
|.||++||..... ..|.. ....|.+ .|.|+++|.||.|.... + ....++++. +.+.+. ..+
T Consensus 14 ~~ivllHG~~~~~--~~w~~-~~~~L~~-~~~vi~~Dl~G~G~S~~-~--------~~~~~~~~~---~~l~~~---~~~ 74 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWRC-IDEELSS-HFTLHLVDLPGFGRSRG-F--------GALSLADMA---EAVLQQ---APD 74 (256)
T ss_pred CeEEEECCCCCCh--hHHHH-HHHHHhc-CCEEEEecCCCCCCCCC-C--------CCCCHHHHH---HHHHhc---CCC
Confidence 5689999964333 24544 3455664 79999999999875321 0 112233333 334433 347
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.++|+|+||.++..++.++|++++.+|...+
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 889999999999999999999999998887655
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0012 Score=72.63 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=110.3
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEE
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAW 210 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~W 210 (1012)
.|++.+..+++....+. +........|||||+.++.+.... ..|+++|+++++.............+.|
T Consensus 12 ~v~~~d~~t~~~~~~~~-------~~~~~~~l~~~~dg~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 12 TISVIDTATLEVTRTFP-------VGQRPRGITLSKDGKLLYVCASDS----DTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred EEEEEECCCCceEEEEE-------CCCCCCceEECCCCCEEEEEECCC----CeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 45555655554433333 112245689999999876554332 2799999999886542222222356899
Q ss_pred eeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEe
Q psy1288 211 THDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTL 290 (1012)
Q Consensus 211 SpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l 290 (1012)
+|||+.++.+..........+... .+.+...... .......++|+|+.+++..... ..+..++..+... ...+
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~---~~~~~~d~~~~~~--~~~~ 153 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET-RKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETT---NMAHFIDTKTYEI--VDNV 153 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeCC-CCcceEEECCCCCEEEEEecCC---CeEEEEeCCCCeE--EEEE
Confidence 999997766543211000000000 0111110000 1112335889998887765431 2344456654331 1111
Q ss_pred eccCCCceeeeeE-EecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCc-----e--EEEeecccccCcEEEEEecCC
Q psy1288 291 IEENKDDVLDWAT-CVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDV-----G--TIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 291 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~-----~--~v~~~~~spdg~~l~~~~ss~ 362 (1012)
.... .. .... ..+++.+++....+ ..+.+|++.+++....++... . ....+.++|+++.+++...+.
T Consensus 154 ~~~~--~~-~~~~~s~dg~~l~~~~~~~--~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 154 LVDQ--RP-RFAEFTADGKELWVSSEIG--GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EcCC--Cc-cEEEECCCCCEEEEEcCCC--CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 1111 11 1122 23445565543323 468889997776544443211 1 112456789998877655332
Q ss_pred CCCcEEEEEeC
Q psy1288 363 LQPTIIFHCNI 373 (1012)
Q Consensus 363 ~~p~~l~~~d~ 373 (1012)
..+.++|+
T Consensus 229 ---~~i~v~d~ 236 (300)
T TIGR03866 229 ---NRVAVVDA 236 (300)
T ss_pred ---CeEEEEEC
Confidence 36888898
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4178|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00012 Score=78.61 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=69.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
+..|+|+.+||-+....++.+. ...|+++||.|+++|.||.|... ........++.-+...+..+++. .
T Consensus 42 ~~gP~illlHGfPe~wyswr~q---~~~la~~~~rviA~DlrGyG~Sd------~P~~~~~Yt~~~l~~di~~lld~--L 110 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYSWRHQ---IPGLASRGYRVIAPDLRGYGFSD------APPHISEYTIDELVGDIVALLDH--L 110 (322)
T ss_pred CCCCEEEEEccCCccchhhhhh---hhhhhhcceEEEecCCCCCCCCC------CCCCcceeeHHHHHHHHHHHHHH--h
Confidence 4579999999987655443332 23466689999999999976421 11111112222222223333332 1
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.-+++.+.||++|+.++..++..+|++..+.+....
T Consensus 111 g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv 146 (322)
T KOG4178|consen 111 GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNV 146 (322)
T ss_pred ccceeEEEeccchhHHHHHHHHhChhhcceEEEecC
Confidence 147899999999999999999999999999887754
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-05 Score=84.25 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
.+..|.||++||..... ..|... ...|.++||.|+.+|.+|.|.... .......+++....+..+++.-.
T Consensus 15 ~~~~p~vvliHG~~~~~--~~w~~~-~~~L~~~g~~vi~~dl~g~G~s~~-------~~~~~~~~~~~~~~l~~~i~~l~ 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGGS--WCWYKI-RCLMENSGYKVTCIDLKSAGIDQS-------DADSVTTFDEYNKPLIDFLSSLP 84 (273)
T ss_pred cCCCCeEEEECCCCCCc--CcHHHH-HHHHHhCCCEEEEecccCCCCCCC-------CcccCCCHHHHHHHHHHHHHhcC
Confidence 35568999999975433 244433 455665799999999999774210 00112345555544444444321
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+++.++|||+||.++..++.++|++++.+|...+
T Consensus 85 -~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~ 120 (273)
T PLN02211 85 -ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAA 120 (273)
T ss_pred -CCCCEEEEEECchHHHHHHHHHhChhheeEEEEecc
Confidence 236899999999999999998888999988887755
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-06 Score=90.39 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 798 YSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 798 ~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
.||+..++ +++.|+|+|||.+|.-||+.+++++|.+++.. +..++++|+.+|.+.+.
T Consensus 192 ~s~i~~~~-------~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s~---------~kkl~~i~Ga~H~l~~~ 248 (307)
T PRK13604 192 DSTINKMK-------GLDIPFIAFTANNDSWVKQSEVIDLLDSIRSE---------QCKLYSLIGSSHDLGEN 248 (307)
T ss_pred ccHHHHHh-------hcCCCEEEEEcCCCCccCHHHHHHHHHHhccC---------CcEEEEeCCCccccCcc
Confidence 57778888 88899999999999999999999999997764 77999999999999875
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.6e-06 Score=101.89 Aligned_cols=129 Identities=17% Similarity=0.126 Sum_probs=81.1
Q ss_pred EEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc-ChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHh
Q psy1288 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF-SVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFD 494 (1012)
Q Consensus 416 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 494 (1012)
|..-++.|.......+.|++|++|||.-....... ......++..++++||.+|||-+. +|--.........+...+.
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~gN~Gl~ 187 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPSGNYGLL 187 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHBSTHHHH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCchhhhhh
Confidence 44567788876555579999999998533332211 111234555679999999999532 1111111000002445678
Q ss_pred HHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 495 DFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 495 D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
|.+.+++|+.++- -.||++|.|+|+|+||..+...+... ..+|+.+|+.+|
T Consensus 188 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG 243 (535)
T PF00135_consen 188 DQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSG 243 (535)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES-
T ss_pred hhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccc
Confidence 9999999999873 27999999999999999998877652 358999999988
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG2984|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-06 Score=81.02 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCc
Q psy1288 434 CILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSR 513 (1012)
Q Consensus 434 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~ 513 (1012)
.|+.+-|.-+ +...+|.+...++..-.-+.++..|.+|-|..-.- .+...-+.-..|...+++-+... +..+
T Consensus 44 ~iLlipGalG-s~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP----~Rkf~~~ff~~Da~~avdLM~aL---k~~~ 115 (277)
T KOG2984|consen 44 YILLIPGALG-SYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPP----ERKFEVQFFMKDAEYAVDLMEAL---KLEP 115 (277)
T ss_pred eeEecccccc-cccccCCHHHHhcCCCCceEEEEECCCCCCCCCCC----cccchHHHHHHhHHHHHHHHHHh---CCCC
Confidence 4555566543 33456777766655443489999999986632110 00001111235666777655553 5678
Q ss_pred EEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccc
Q psy1288 514 LAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEIS 550 (1012)
Q Consensus 514 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~ 550 (1012)
+.++|+|-||..++.++.+.++.+...+.+.++..++
T Consensus 116 fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn 152 (277)
T KOG2984|consen 116 FSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVN 152 (277)
T ss_pred eeEeeecCCCeEEEEeeccChhhhhhheeecccceec
Confidence 9999999999999999999888776666665533343
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.2e-05 Score=81.93 Aligned_cols=97 Identities=16% Similarity=0.091 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
|.||++||..+... .|.... ..+ + +|.|+.+|.||.|..... ....+++....+..+++.- ..+
T Consensus 3 p~vvllHG~~~~~~--~w~~~~-~~l-~-~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~~ 66 (242)
T PRK11126 3 PWLVFLHGLLGSGQ--DWQPVG-EAL-P-DYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NIL 66 (242)
T ss_pred CEEEEECCCCCChH--HHHHHH-HHc-C-CCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CCC
Confidence 67999999765442 454433 344 3 799999999998754221 0113444444444444432 346
Q ss_pred cEEEEecChHHHHHHHHHhhCCC-ceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPD-LFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~ 545 (1012)
++.++|+|+||.+++.++.++|+ ++++++...+
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~ 100 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGG 100 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCC
Confidence 89999999999999999988865 4888777655
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.3e-05 Score=83.99 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=50.5
Q ss_pred CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCc-EEEEecChHHHHHHHHHhhCCCceeE
Q psy1288 461 FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSR-LAIQGGSNGGLLTAACINQRPDLFGA 539 (1012)
Q Consensus 461 ~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a 539 (1012)
.+|.|+.+|.||.|+... . .....|....+..+++. ...++ +.++|+|+||.+++.++.++|+++..
T Consensus 98 ~~~~Vi~~Dl~G~g~s~~-------~---~~~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 98 ARFRLLAFDFIGADGSLD-------V---PIDTADQADAIALLLDA--LGIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cccEEEEEeCCCCCCCCC-------C---CCCHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 489999999998754210 0 11233444444444443 22334 46999999999999999999999999
Q ss_pred EEEccC
Q psy1288 540 AIVQVG 545 (1012)
Q Consensus 540 ~v~~~~ 545 (1012)
.|...+
T Consensus 166 LvLi~s 171 (343)
T PRK08775 166 LVVVSG 171 (343)
T ss_pred EEEECc
Confidence 888766
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=89.41 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=43.0
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.-+|++|++|++|+.+ .|++.|.++|++.|+ ++++.++++..|||..
T Consensus 247 ~lPp~~i~~g~~D~L~--de~~~~~~~L~~aGv-------~v~~~~~~g~~H~f~~ 293 (318)
T PRK10162 247 DVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQQ-------PCEFKLYPGTLHAFLH 293 (318)
T ss_pred CCCCeEEEecCCCcCc--ChHHHHHHHHHHcCC-------CEEEEEECCCceehhh
Confidence 4589999999999986 499999999999999 9999999999999863
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=85.04 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=45.4
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+|+|++||++|+.||+.++.+++++|++.|+ ++++.+||+.||++..
T Consensus 148 ~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~-------~~~~~~~~~~gH~i~~ 195 (232)
T PRK11460 148 ATTIHLIHGGEDPVIDVAHAVAAQEALISLGG-------DVTLDIVEDLGHAIDP 195 (232)
T ss_pred CCcEEEEecCCCCccCHHHHHHHHHHHHHCCC-------CeEEEEECCCCCCCCH
Confidence 39999999999999999999999999999987 9999999999999964
|
|
| >KOG3101|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-05 Score=76.86 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=80.6
Q ss_pred CceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC--hhHHHHHHhCCeEEEEEcC--CCCCCCch--hH------
Q psy1288 413 GTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS--VTKIVFLRDFNGIYAIPNI--RGGGEYGE--RW------ 480 (1012)
Q Consensus 413 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~d~--RG~g~~g~--~~------ 480 (1012)
+..+..-++.|+.....++.|+++++.|-.. ....|. ..+.+.....|.+|+.+|- ||-.--|. .|
T Consensus 25 ~c~Mtf~vylPp~a~~~k~~P~lf~LSGLTC--T~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGKRCPVLFYLSGLTC--THENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ccceEEEEecCCCcccCCcCceEEEecCCcc--cchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 3445667788888777777999999988532 222332 2244555567999999985 55321111 11
Q ss_pred --Hhh-hhcCCCc--chHhHHHHHHHHHHH--cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 481 --HDG-GRLLNKQ--NVFDDFQCAAEYLIA--SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 481 --~~~-~~~~~~~--~~~~D~~a~~~~l~~--~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+-. ....|.. ++++=+..-+-.++. .-.+|+.+++|.||||||+-++....+.|.+|+.+-+.+|
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAP 174 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAP 174 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceecccc
Confidence 111 1111211 122222222222222 2347999999999999999988888888999999999988
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-05 Score=86.34 Aligned_cols=131 Identities=19% Similarity=0.170 Sum_probs=80.8
Q ss_pred CceEEEEEEEeCCCCCCCCCcEEEEEcCC-CCCCCCCCcChhHHHHHHhCC----eEEEEEcCCCCCCCchhHHhh----
Q psy1288 413 GTKIPMFILSRKGAQLDGNNPCILYGYGG-FAVSLQPGFSVTKIVFLRDFN----GIYAIPNIRGGGEYGERWHDG---- 483 (1012)
Q Consensus 413 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~RG~g~~g~~~~~~---- 483 (1012)
|..+.++++.|+++...++.|+|++.||. ..... .........+.. .| .++++++..+.......|...
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~~-~~~~~~~~~~~~-~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFRN-GNAQEALDRLIA-EGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHHH-HHHHHHHHHHHH-HHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCcccccc-chHHHHHHHHHH-hCCCCceEEEEEecccccccccccccccccc
Confidence 66788999999998788999999999995 10000 000111112233 23 455555554443222333311
Q ss_pred --hhcCCCcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 --GRLLNKQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 --~~~~~~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.....+...+.+++ ..+.++.++-.+.+++.+|+|.|+||+.++.++.++|++|.++++.+|
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~ 148 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSG 148 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESE
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCc
Confidence 11112222334443 234555555555666699999999999999999999999999999998
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=6e-05 Score=84.34 Aligned_cols=190 Identities=17% Similarity=0.155 Sum_probs=110.8
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEE-eCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRI-ETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~-~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.+.|.+|++||+.=..............+... .+.+++.+ |+-+.+. .+...+++..+.+.|+.++...
T Consensus 77 ~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~-------~g~~vv~vdYrlaPe~---~~p~~~~d~~~a~~~l~~~~~~ 146 (312)
T COG0657 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAA-------AGAVVVSVDYRLAPEH---PFPAALEDAYAAYRWLRANAAE 146 (312)
T ss_pred CCCcEEEEEeCCeeeecChhhhHHHHHHHHHH-------cCCEEEecCCCCCCCC---CCCchHHHHHHHHHHHHhhhHh
Confidence 46889999999954444444443555666555 44444444 4434333 3345578888889999988654
Q ss_pred CCCCCCCCCCccCCccccccCccceeeecccccccc-----chhhhcccccCCCCCCCCCC----------------Ccc
Q psy1288 723 LQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDD-----ILIAEVLDMLKFNKFTIGYF----------------WES 781 (1012)
Q Consensus 723 ~~~~~d~~~~~GgS~g~~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~~~~~~----------------~~~ 781 (1012)
....++...+.|.|-| +..++++++.-+.. ..+..++-|+.... ..... |+.
T Consensus 147 ~g~dp~~i~v~GdSAG------G~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 219 (312)
T COG0657 147 LGIDPSRIAVAGDSAG------GHLALALALAARDRGLPLPAAQVLISPLLDLTS-SAASLPGYGEADLLDAAAILAWFA 219 (312)
T ss_pred hCCCccceEEEecCcc------cHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-cccchhhcCCccccCHHHHHHHHH
Confidence 3333333334488877 23444444443322 11112222222211 00000 110
Q ss_pred --cCCCCCChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEE
Q psy1288 782 --DYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRI 859 (1012)
Q Consensus 782 --~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 859 (1012)
..+...+... -..||+.... +. . -+|+||++|+.|+-.+ |++.+.++|+..|+ ++++.+
T Consensus 220 ~~~~~~~~~~~~----p~~spl~~~~----~~-~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv-------~~~~~~ 280 (312)
T COG0657 220 DLYLGAAPDRED----PEASPLASDD----LS-G-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGV-------PVELRV 280 (312)
T ss_pred HHhCcCccccCC----CccCcccccc----cc-C-CCCEEEEecCCCcchh--HHHHHHHHHHHcCC-------eEEEEE
Confidence 0111111000 1356665552 11 3 6999999999999999 99999999999999 999999
Q ss_pred eCCCCCCCCC
Q psy1288 860 ETKAGHGGGK 869 (1012)
Q Consensus 860 ~~~~gH~~~~ 869 (1012)
+++..|+|..
T Consensus 281 ~~g~~H~f~~ 290 (312)
T COG0657 281 YPGMIHGFDL 290 (312)
T ss_pred eCCcceeccc
Confidence 9999999953
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.8e-05 Score=84.25 Aligned_cols=120 Identities=17% Similarity=0.057 Sum_probs=76.9
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
+.+|.++.+.. .+ .+..|.||++||...... .|... ...|. .+|.|+++|.+|.|....... ....
T Consensus 111 ~~~~~~~~y~~---~G---~~~~~~ivllHG~~~~~~--~w~~~-~~~L~-~~~~Via~DlpG~G~S~~p~~----~~~~ 176 (383)
T PLN03084 111 SSDLFRWFCVE---SG---SNNNPPVLLIHGFPSQAY--SYRKV-LPVLS-KNYHAIAFDWLGFGFSDKPQP----GYGF 176 (383)
T ss_pred cCCceEEEEEe---cC---CCCCCeEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEECCCCCCCCCCCcc----cccc
Confidence 35676665432 22 123478999999754332 34433 45566 489999999999875322100 0011
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++...+..+++.- ..+++.++|+|+||.+++.++.++|++++.+|...+
T Consensus 177 ~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~ 230 (383)
T PLN03084 177 NYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNP 230 (383)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECC
Confidence 224455555555555442 235788999999999999999999999999998865
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00024 Score=81.30 Aligned_cols=85 Identities=18% Similarity=0.075 Sum_probs=59.0
Q ss_pred HhCCeEEEEEcCCCCCC--------CchhHHhhhhc-----CCCcchHhHHHHHHHHHHHcCCCCCCcEE-EEecChHHH
Q psy1288 459 RDFNGIYAIPNIRGGGE--------YGERWHDGGRL-----LNKQNVFDDFQCAAEYLIASGYTQSSRLA-IQGGSNGGL 524 (1012)
Q Consensus 459 ~~~G~~v~~~d~RG~g~--------~g~~~~~~~~~-----~~~~~~~~D~~a~~~~l~~~~~~d~~~i~-i~G~S~GG~ 524 (1012)
+-.-|-|+++|.-|++. .|..-...+.+ .....++.|+...+..+++.- .-+++. ++|+|+||.
T Consensus 96 Dt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ 173 (389)
T PRK06765 96 DTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGM 173 (389)
T ss_pred CCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHH
Confidence 33469999999998752 12111111111 223356788888877777642 345675 899999999
Q ss_pred HHHHHHhhCCCceeEEEEccC
Q psy1288 525 LTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 525 l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++..+.++|+++..+|..++
T Consensus 174 ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 174 QAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred HHHHHHHHChHhhheEEEEec
Confidence 999999999999998888766
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=84.91 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=95.4
Q ss_pred EeeeEEECCCCcEEEEEEeCC---CCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSS---GSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~---G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
.++++++||||+++||+.... ++...+||+.+. +|+.++.+.... .+.++|||||+.|+|+.+.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~-~t~PsWspDG~~lw~v~dg----------- 417 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHS-LTRPSWSLDADAVWVVVDG----------- 417 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCC-CCCceECCCCCceEEEecC-----------
Confidence 578999999999999998532 234579999997 455566554443 6889999999999998642
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 314 (1012)
+.+.++.+.+ ...+++.++++.++.. . ..+..+.......||.++++..
T Consensus 418 ------------------------~~~~~v~~~~-~~gql~~~~vd~ge~~---~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 418 ------------------------NTVVRVIRDP-ATGQLARTPVDASAVA---S---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ------------------------cceEEEeccC-CCceEEEEeccCchhh---h---ccCCCcCeEEECCCCCEEEEEE
Confidence 1122333222 2356777777655421 1 1112222222334666776655
Q ss_pred EcCceEEEEE---EecCCCceeee-----ecCCce-EEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHL---HDLASGKHLYT-----FPLDVG-TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~---~dl~~G~~~~~-----l~~~~~-~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++ +|++ ...++|+ .+. +....+ .+..+.|..++. |++..+.... .++.+++
T Consensus 467 --~g--~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~--~v~~v~v 526 (591)
T PRK13616 467 --GG--KVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEH--PVWYVNL 526 (591)
T ss_pred --CC--EEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCE-EEEEecCCCC--ceEEEec
Confidence 22 5655 4444554 221 222222 234677887766 6655554332 3677877
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00021 Score=96.07 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=70.3
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..|.||++||..+... .|... ...|. .+|.|+.+|.||.|.....-............++++...+..+++. ..
T Consensus 1370 ~~~~vVllHG~~~s~~--~w~~~-~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~ 1443 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE--DWIPI-MKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--IT 1443 (1655)
T ss_pred CCCeEEEECCCCCCHH--HHHHH-HHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hC
Confidence 3578999999765443 34433 34455 3799999999998764321000000001122344554444444443 24
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.+++.++.++|++++.++...+
T Consensus 1444 ~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~ 1478 (1655)
T PLN02980 1444 PGKVTLVGYSMGARIALYMALRFSDKIEGAVIISG 1478 (1655)
T ss_pred CCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECC
Confidence 56899999999999999999999999998887765
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.5e-06 Score=86.41 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=42.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCc
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 871 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 871 (1012)
++..|+|+++|++|+-+|..+-+++.++|+++|+ ++++.+||+.+|||..+.
T Consensus 143 ~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~-------~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 143 KIKAPVLILFGENDPFFPPEEVEALEEALKAAGV-------DVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp G--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTT-------TEEEEEETT--TTTTSTT
T ss_pred ccCCCEeecCccCCCCCChHHHHHHHHHHHhcCC-------cEEEEECCCCcccccCCC
Confidence 5669999999999999999999999999999988 999999999999998763
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.9e-05 Score=81.39 Aligned_cols=232 Identities=16% Similarity=0.094 Sum_probs=126.0
Q ss_pred CCCCcEEEEEcCCCCCCCCCCc--ChhHHHHHHhCCeEEEEEcCC--------------CC-CCCchhHHhhhhcCCCcc
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGF--SVTKIVFLRDFNGIYAIPNIR--------------GG-GEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~--~~~~~~~l~~~G~~v~~~d~R--------------G~-g~~g~~~~~~~~~~~~~~ 491 (1012)
..+.|++++.||-.... +.+ ........+..|++++.+|.. |+ .++..+|........ ..
T Consensus 51 ~~~ipV~~~l~G~t~~~--~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~ 127 (316)
T COG0627 51 GRDIPVLYLLSGLTCNE--PNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PY 127 (316)
T ss_pred CCCCCEEEEeCCCCCCC--CceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-cc
Confidence 35567777777643221 111 111223344557777776322 32 244455554321111 23
Q ss_pred hHhHHHHH-HHHHHH-cCCCCC--CcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccC
Q psy1288 492 VFDDFQCA-AEYLIA-SGYTQS--SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNN 567 (1012)
Q Consensus 492 ~~~D~~a~-~~~l~~-~~~~d~--~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~ 567 (1012)
.+++++.. +-.++. ....+. ++.+|.|+||||+-++.++.++|++|..+.+.+| +-+...+
T Consensus 128 q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg---~~~~s~~------------ 192 (316)
T COG0627 128 QWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSG---ILSPSSP------------ 192 (316)
T ss_pred chhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccc---ccccccc------------
Confidence 34555432 222222 222333 3899999999999999999999999999999998 2221000
Q ss_pred cccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCC---
Q psy1288 568 MFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGK--- 644 (1012)
Q Consensus 568 ~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~--- 644 (1012)
+. +. +......-+..+...||...++ .+..++|..++.+-. ...
T Consensus 193 ---------~~--------~~----------~~~~~~~g~~~~~~~~G~~~~~----~w~~~D~~~~~~~l~--~~~~~~ 239 (316)
T COG0627 193 ---------WG--------PT----------LAMGDPWGGKAFNAMLGPDSDP----AWQENDPLSLIEKLV--ANANTR 239 (316)
T ss_pred ---------cc--------cc----------ccccccccCccHHHhcCCCccc----cccccCchhHHHHhh--hccccc
Confidence 00 00 0000000111222234544321 255666666554100 011
Q ss_pred ------CCCcEEEEeeCCCCCCC--hHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHH
Q psy1288 645 ------QYPATLLMTADHDDRVS--PVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFY 716 (1012)
Q Consensus 645 ------~~P~vLiihG~~D~~v~--~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl 716 (1012)
.-|.+++-+|..|.... ...+..+.+++.++ +.+..+...+++.|.+.- ....+.+.+.|+
T Consensus 240 ~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~-------g~~~~~~~~~~G~Hsw~~----w~~~l~~~~~~~ 308 (316)
T COG0627 240 IWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAA-------GIPNGVRDQPGGDHSWYF----WASQLADHLPWL 308 (316)
T ss_pred ceecccCCCccccccccchhhhhhcccCHHHHHHHHHhc-------CCCceeeeCCCCCcCHHH----HHHHHHHHHHHH
Confidence 33558888888876554 22367788888888 888888888889998643 234566777888
Q ss_pred HHhCCC
Q psy1288 717 LTSGPV 722 (1012)
Q Consensus 717 ~~~l~~ 722 (1012)
...++.
T Consensus 309 a~~l~~ 314 (316)
T COG0627 309 AGALGL 314 (316)
T ss_pred HHHhcc
Confidence 777654
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.2e-05 Score=84.20 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=59.5
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCc------hhHHhhh-------h-----cCCC--
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYG------ERWHDGG-------R-----LLNK-- 489 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g------~~~~~~~-------~-----~~~~-- 489 (1012)
++.|+||+.||-.+... .|+.. ..-|+++||+|++++.|-+.... ..-.... . ....
T Consensus 98 ~~~PvvIFSHGlgg~R~--~yS~~-~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRT--SYSAI-CGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDP 174 (379)
T ss_dssp S-EEEEEEE--TT--TT--TTHHH-HHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----G
T ss_pred CCCCEEEEeCCCCcchh--hHHHH-HHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccc
Confidence 67999999999765543 34443 45677789999999999553221 1100000 0 0000
Q ss_pred cc-----------hHhHHHHHHHHHHH--c------------------CCCCCCcEEEEecChHHHHHHHHHhhCCCcee
Q psy1288 490 QN-----------VFDDFQCAAEYLIA--S------------------GYTQSSRLAIQGGSNGGLLTAACINQRPDLFG 538 (1012)
Q Consensus 490 ~~-----------~~~D~~a~~~~l~~--~------------------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~ 538 (1012)
.. -..++..+++.|.+ . +.+|.++|+++|||+||..++.++.+. .+|+
T Consensus 175 ~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~ 253 (379)
T PF03403_consen 175 EEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFK 253 (379)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcc
Confidence 00 02355555555542 1 235678999999999999998888775 6789
Q ss_pred EEEEccC
Q psy1288 539 AAIVQVG 545 (1012)
Q Consensus 539 a~v~~~~ 545 (1012)
++|..-|
T Consensus 254 ~~I~LD~ 260 (379)
T PF03403_consen 254 AGILLDP 260 (379)
T ss_dssp EEEEES-
T ss_pred eEEEeCC
Confidence 9887766
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00029 Score=86.20 Aligned_cols=107 Identities=10% Similarity=0.074 Sum_probs=64.3
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
...||.+|.+..+-+ ...|.||++||...... .|... ...|. .||.|+.+|+||.|...... ..
T Consensus 8 ~~~~g~~l~~~~~g~------~~~~~ivllHG~~~~~~--~w~~~-~~~L~-~~~~Vi~~D~~G~G~S~~~~------~~ 71 (582)
T PRK05855 8 VSSDGVRLAVYEWGD------PDRPTVVLVHGYPDNHE--VWDGV-APLLA-DRFRVVAYDVRGAGRSSAPK------RT 71 (582)
T ss_pred EeeCCEEEEEEEcCC------CCCCeEEEEcCCCchHH--HHHHH-HHHhh-cceEEEEecCCCCCCCCCCC------cc
Confidence 345888887665421 23578999999764332 34433 44565 59999999999987542211 11
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhh
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
...+++++...+..+++.-. ....+.++|||+||.+++.++.+
T Consensus 72 ~~~~~~~~a~dl~~~i~~l~-~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 72 AAYTLARLADDFAAVIDAVS-PDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred cccCHHHHHHHHHHHHHHhC-CCCcEEEEecChHHHHHHHHHhC
Confidence 11234444444444443311 12349999999999888766654
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00099 Score=72.07 Aligned_cols=198 Identities=17% Similarity=0.143 Sum_probs=107.2
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec--ceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH--RLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSK 233 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~--~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~ 233 (1012)
--+-..++|++||++|=..... ..-||.+.-++.-.+.-|.. ......+.||||.++|+-...+....-. .+.+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~---Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDS---TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCc---eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 3466889999999999655432 23566666555422222222 2235778999999988765433110000 0111
Q ss_pred CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEE
Q psy1288 234 KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313 (1012)
Q Consensus 234 ~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 313 (1012)
+.. ..|.... .-.+....|-|||.++..-+ ++..++..|+++.....|+-+-.. .+..-....||+.++..
T Consensus 302 d~~-~~y~~~~-~~S~~sc~W~pDg~~~V~Gs----~dr~i~~wdlDgn~~~~W~gvr~~---~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 302 DLR-HLYPSGL-GFSVSSCAWCPDGFRFVTGS----PDRTIIMWDLDGNILGNWEGVRDP---KVHDLAITYDGKYVLLV 372 (519)
T ss_pred hhh-hhcccCc-CCCcceeEEccCCceeEecC----CCCcEEEecCCcchhhcccccccc---eeEEEEEcCCCcEEEEE
Confidence 100 0110000 01123456999999966554 446789999887655567543211 12222222354555444
Q ss_pred EEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 314 YIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 314 ~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
. . ..++.+++.++-..+..++. ...+..++.|.|++.+.+.. .+.++..+|++
T Consensus 373 ~-~--d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL----~~qei~LWDl~ 425 (519)
T KOG0293|consen 373 T-V--DKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNL----QDQEIHLWDLE 425 (519)
T ss_pred e-c--ccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEc----ccCeeEEeecc
Confidence 3 2 35677777743322223332 23356778888888776665 44578888884
|
|
| >KOG4409|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00034 Score=75.44 Aligned_cols=102 Identities=16% Similarity=0.060 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh-HHhhhhcCCCcchHhHHHHHH-HHHHHcCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER-WHDGGRLLNKQNVFDDFQCAA-EYLIASGYT 509 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~-~~~~~~~~~~~~~~~D~~a~~-~~l~~~~~~ 509 (1012)
...+|++||-..... -|-.. ..-|+. ...|.++|..|.|...+- |.... ...-.-++..+ +|-.+.+.
T Consensus 90 ~~plVliHGyGAg~g--~f~~N-f~~La~-~~~vyaiDllG~G~SSRP~F~~d~-----~~~e~~fvesiE~WR~~~~L- 159 (365)
T KOG4409|consen 90 KTPLVLIHGYGAGLG--LFFRN-FDDLAK-IRNVYAIDLLGFGRSSRPKFSIDP-----TTAEKEFVESIEQWRKKMGL- 159 (365)
T ss_pred CCcEEEEeccchhHH--HHHHh-hhhhhh-cCceEEecccCCCCCCCCCCCCCc-----ccchHHHHHHHHHHHHHcCC-
Confidence 344666787322111 12222 334553 889999999997754332 11111 11112344443 45556543
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++.++|||+||+++...+.++|+++.-.|+..|
T Consensus 160 --~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP 193 (365)
T KOG4409|consen 160 --EKMILVGHSFGGYLAAKYALKYPERVEKLILVSP 193 (365)
T ss_pred --cceeEeeccchHHHHHHHHHhChHhhceEEEecc
Confidence 5899999999999999999999999998888776
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00069 Score=79.93 Aligned_cols=105 Identities=12% Similarity=-0.004 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCCCCCCcC--hhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFS--VTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
+-||++|+......-.+.. .++..+|.++||.|+++|.||.+.....+. ......+++.++++++.+. ..
T Consensus 189 ~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~------~ddY~~~~i~~al~~v~~~--~g 260 (532)
T TIGR01838 189 TPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKT------FDDYIRDGVIAALEVVEAI--TG 260 (532)
T ss_pred CcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCC------hhhhHHHHHHHHHHHHHHh--cC
Confidence 4466677753222111111 245677777899999999998764322110 1111224566777777654 35
Q ss_pred CCcEEEEecChHHHHHHH----HHhhC-CCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAA----CINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~----~~~~~-p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.++.. ++... ++++++++....
T Consensus 261 ~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t 300 (532)
T TIGR01838 261 EKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTT 300 (532)
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEec
Confidence 678999999999998532 23343 677777776655
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.011 Score=61.42 Aligned_cols=189 Identities=13% Similarity=0.201 Sum_probs=107.5
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc-eeeeeeEEeeCCCeEEEEecCCCC-----Ccc
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKS-----KSK 229 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~-----~g~ 229 (1012)
...++...+|+||++. ++.+.++ .++++|+++|+.++.-.++ ...-++++|+|++.|+--+.+... .|.
T Consensus 63 sH~v~dv~~s~dg~~a-lS~swD~----~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFA-LSASWDG----TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred ceEecceEEccCCceE-Eeccccc----eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 4678999999999765 4555544 8999999999876543333 345789999999998755443211 111
Q ss_pred -----cCCC-CCc--eEEEEeec-----------------cc-------------cceeeeeeecCCCEEEEEECCCCCC
Q psy1288 230 -----KHSK-KNR--SSAYHLTV-----------------NV-------------APITSQYITNEGPQFVFKTNKDAPN 271 (1012)
Q Consensus 230 -----~~~~-~~~--~l~~~~~~-----------------~~-------------~~i~~~~~s~dg~~l~~~tn~~~~~ 271 (1012)
.+.. .+. .+.|+... |. .-+.+..+||||..++- ++..
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas----Ggkd 213 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS----GGKD 213 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec----CCCC
Confidence 0111 111 11111110 00 11235568999876544 4567
Q ss_pred ceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-c--------eE
Q psy1288 272 YRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-V--------GT 342 (1012)
Q Consensus 272 ~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~--------~~ 342 (1012)
..++..|++.++ .+..-.....+....+.. +..++...-+ +.+.+|+++++.....+... . -.
T Consensus 214 g~~~LwdL~~~k-----~lysl~a~~~v~sl~fsp-nrywL~~at~--~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 214 GEAMLWDLNEGK-----NLYSLEAFDIVNSLCFSP-NRYWLCAATA--TSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred ceEEEEEccCCc-----eeEeccCCCeEeeEEecC-CceeEeeccC--CceEEEeccchhhhhhccccccccccccCCcE
Confidence 889999998764 233233334555555444 3333332221 33888999766544433322 1 11
Q ss_pred EEeecccccCcEEEEEecC
Q psy1288 343 IVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 343 v~~~~~spdg~~l~~~~ss 361 (1012)
...++|+.||.+|+-.+++
T Consensus 286 clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred EEEEEEcCCCcEEEeeecC
Confidence 2356788888888766654
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00034 Score=70.56 Aligned_cols=119 Identities=20% Similarity=0.084 Sum_probs=72.0
Q ss_pred EEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhh
Q psy1288 406 VFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGR 485 (1012)
Q Consensus 406 v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 485 (1012)
+.+..+||..+++..+...+ +.+-.+.+-|+.+.. ..|-..+.+.++.+||.|++.|+||.++....-.....
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-----~~~g~~~va~a~Gv~--~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~ 80 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-----KASGRLVVAGATGVG--QYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQ 80 (281)
T ss_pred cccccCCCccCccccccCCC-----CCCCcEEecccCCcc--hhHhHHHHHHhhccCceEEEEecccccCCCccccccCc
Confidence 34567899999888774332 333334445554433 23444456777788999999999998865322111100
Q ss_pred cCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 534 (1012)
-....=...|+.+++.++.+.... -.+..+|||+||.+...+. +++
T Consensus 81 ~~~~DwA~~D~~aal~~~~~~~~~--~P~y~vgHS~GGqa~gL~~-~~~ 126 (281)
T COG4757 81 WRYLDWARLDFPAALAALKKALPG--HPLYFVGHSFGGQALGLLG-QHP 126 (281)
T ss_pred cchhhhhhcchHHHHHHHHhhCCC--CceEEeeccccceeecccc-cCc
Confidence 011111235888888888875322 3467889999998755443 445
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0015 Score=67.40 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=78.5
Q ss_pred CeeeCCEEEEEEE-c---CCCC---eeEEEEEeCCCCceEEE-cCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCce
Q psy1288 111 PQRQGDHYFFFHN-T---GLQN---HSVMYIQDSLDGEARVF-LDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDW 182 (1012)
Q Consensus 111 p~~dG~~~yy~~~-~---~~~~---~~~l~~~~~~~g~~~~L-~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~ 182 (1012)
+.+.|+++..... + .++. ...||+.+..+...+.+ ++ ....+.+++|||+|+++|.......
T Consensus 13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-------~~~~I~~~~WsP~g~~favi~g~~~--- 82 (194)
T PF08662_consen 13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-------KEGPIHDVAWSPNGNEFAVIYGSMP--- 82 (194)
T ss_pred ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-------CCCceEEEEECcCCCEEEEEEccCC---
Confidence 4478888776554 1 1111 24677776655443333 22 1124889999999999987764322
Q ss_pred EEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEee-------ccccceeeeeee
Q psy1288 183 TSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT-------VNVAPITSQYIT 255 (1012)
Q Consensus 183 ~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~-------~~~~~i~~~~~s 255 (1012)
..+.++|+++.... ++.......+.|||+|+.|+....... .|. -. ++... ..........||
T Consensus 83 ~~v~lyd~~~~~i~--~~~~~~~n~i~wsP~G~~l~~~g~~n~-~G~------l~-~wd~~~~~~i~~~~~~~~t~~~Ws 152 (194)
T PF08662_consen 83 AKVTLYDVKGKKIF--SFGTQPRNTISWSPDGRFLVLAGFGNL-NGD------LE-FWDVRKKKKISTFEHSDATDVEWS 152 (194)
T ss_pred cccEEEcCcccEeE--eecCCCceEEEECCCCCEEEEEEccCC-CcE------EE-EEECCCCEEeeccccCcEEEEEEc
Confidence 27888888743332 233333467899999999988763211 011 01 11110 000123344699
Q ss_pred cCCCEEEEEEC
Q psy1288 256 NEGPQFVFKTN 266 (1012)
Q Consensus 256 ~dg~~l~~~tn 266 (1012)
|||++|+..+.
T Consensus 153 PdGr~~~ta~t 163 (194)
T PF08662_consen 153 PDGRYLATATT 163 (194)
T ss_pred CCCCEEEEEEe
Confidence 99999988764
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=69.97 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=44.8
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeeccee-eeeeEEeeCCCeEEEEecC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLK-FVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~-~~~~~WSpDG~~l~y~~~~ 223 (1012)
..+-..+|||||++||= |+...+++++|+.+..+.-....... ...++|||||+.|+-...+
T Consensus 116 e~Vl~~~fsp~g~~l~t-----GsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVT-----GSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred CcEEEEEecCCCceEEe-----cCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC
Confidence 45667899999999974 44456899999988766543333322 4679999999998776543
|
|
| >KOG1454|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00051 Score=76.66 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
...|.|+.+||-... ...|......+....|+.|..+|..|.|..+ +.+.+ ..-...+....+..+......
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s--~~~~~----~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS--PLPRG----PLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCCCCcCC--CCCCC----CceehhHHHHHHHHHHHhhcC
Confidence 456789999995432 2344433322333336999999999955321 11111 112334444444433333222
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEE
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 541 (1012)
.++.++|+|+||+++..++..+|+.....+
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCccccccee
Confidence 348899999999999999999999988877
|
|
| >KOG2112|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00045 Score=69.30 Aligned_cols=61 Identities=18% Similarity=0.054 Sum_probs=51.3
Q ss_pred CCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHH
Q psy1288 645 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLT 718 (1012)
Q Consensus 645 ~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~ 718 (1012)
+++++++.||..|+.||.....+....|+.. +..++++.|++-+|... -+++.++..|+.+
T Consensus 143 ~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~-------~~~~~f~~y~g~~h~~~------~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 143 NYTPILLCHGTADPLVPFRFGEKSAQFLKSL-------GVRVTFKPYPGLGHSTS------PQELDDLKSWIKT 203 (206)
T ss_pred CcchhheecccCCceeehHHHHHHHHHHHHc-------CCceeeeecCCcccccc------HHHHHHHHHHHHH
Confidence 3556999999999999999999999999988 77799999999999643 3566777788876
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.025 Score=63.27 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=58.2
Q ss_pred eCCEEEEEEEcCC-CCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEe-----CCCCceEEEEE
Q psy1288 114 QGDHYFFFHNTGL-QNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLS-----SSGSDWTSMHF 187 (1012)
Q Consensus 114 dG~~~yy~~~~~~-~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~-----~~G~~~~~L~v 187 (1012)
++. .+|+.+... .....+++.+....+..--++. |.. -.. .+||||+.|..... ..|.+.-.|-+
T Consensus 11 ~~~-~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~------G~~-P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v 81 (352)
T TIGR02658 11 DAR-RVYVLDPGHFAATTQVYTIDGEAGRVLGMTDG------GFL-PNP-VVASDGSFFAHASTVYSRIARGKRTDYVEV 81 (352)
T ss_pred CCC-EEEEECCcccccCceEEEEECCCCEEEEEEEc------cCC-Cce-eECCCCCEEEEEeccccccccCCCCCEEEE
Confidence 444 466665431 1125788888755432222221 221 122 49999999977766 12333448999
Q ss_pred EECCCCceece-eecc-------eeeeeeEEeeCCCeEEEEe
Q psy1288 188 KDVATGKEYPE-VLHR-------LKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 188 ~dl~tg~~~~~-t~~~-------~~~~~~~WSpDG~~l~y~~ 221 (1012)
+|+++++.... .++. .....++.|||||.||...
T Consensus 82 ~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 82 IDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred EECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec
Confidence 99999987642 2211 1124789999999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=78.74 Aligned_cols=111 Identities=10% Similarity=0.014 Sum_probs=73.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHH-HHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKI-VFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
...|++|++||..+.. ...|..... .++...++.|+++|+++...... ..... ......+++...+++|.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y--~~a~~--~~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPNY--PQAVN--NTRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccCh--HHHHH--hHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999965433 123332222 35554579999999987632211 11100 001112456666777777645
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.+++.++|||+||.+++.++.+.|+++..++...|
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDP 145 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDP 145 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecC
Confidence 6778999999999999999999998988888888766
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.029 Score=62.75 Aligned_cols=246 Identities=12% Similarity=0.065 Sum_probs=121.4
Q ss_pred CCeeeCCEEEEEEE-----cCCCCeeEEEEEeCCCCceEEEcCC-CC-CCCCCceEeeeEEECCCCcEEEEEEeCCCCce
Q psy1288 110 SPQRQGDHYFFFHN-----TGLQNHSVMYIQDSLDGEARVFLDP-NN-LSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDW 182 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~-----~~~~~~~~l~~~~~~~g~~~~L~D~-n~-la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~ 182 (1012)
..+|||+.+|-... .-++....|-..+....+...=+.. .. ...-+ .....+.+|||||+|... +... .
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~-~~~~~~~ls~dgk~l~V~-n~~p--~ 127 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG-TYPWMTSLTPDNKTLLFY-QFSP--S 127 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc-CccceEEECCCCCEEEEe-cCCC--C
Confidence 36699998775543 1122223455555544332211110 00 00001 123378999999998643 3322 2
Q ss_pred EEEEEEECCCCceece-eeccee-------eeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccce-eeee
Q psy1288 183 TSMHFKDVATGKEYPE-VLHRLK-------FVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPI-TSQY 253 (1012)
Q Consensus 183 ~~L~v~dl~tg~~~~~-t~~~~~-------~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i-~~~~ 253 (1012)
..+-++|+++++.... ..+.+. .....-+.||+.+.++........ .....+++.. ...+ .-+.
T Consensus 128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-----~~~~~vf~~~--~~~v~~rP~ 200 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-----IKPTEVFHPE--DEYLINHPA 200 (352)
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE-----EeeeeeecCC--ccccccCCc
Confidence 3789999999987642 222221 112233467765555433211000 0001111100 0000 1112
Q ss_pred eecCCCEEEEEECCCCCCceEEEEeCCCCcc---cCcEEeeccCC---Cce--eeeeEE-ecCCEEEEEEEc-------C
Q psy1288 254 ITNEGPQFVFKTNKDAPNYRLITIDFDNFAE---SNWKTLIEENK---DDV--LDWATC-VANDKLILSYIH-------H 317 (1012)
Q Consensus 254 ~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~---~~~~~l~~~~~---~~~--~~~~~~-~~~~~l~~~~~~-------~ 317 (1012)
+++.+++.+|.++. ..++.+|+.+.+. ..|..+..... +.. .+.+.. .+++++|+.... +
T Consensus 201 ~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 201 YSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred eEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 45533455555554 6789998754321 12332222111 010 112333 355777775432 2
Q ss_pred ceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 318 VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 318 g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+..+++++|..+++....+.... ...++.+++|++-++|..+.. ...|..+|.
T Consensus 277 ~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~ 329 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTG--DKTLYIFDA 329 (352)
T ss_pred CCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCC--CCcEEEEEC
Confidence 23689999998888777776543 344778899999455555542 345889998
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0028 Score=65.32 Aligned_cols=148 Identities=9% Similarity=0.092 Sum_probs=84.8
Q ss_pred eeEEECCCCcEEEEEEeCC----CC---ceEEEEEEECCCCceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccC
Q psy1288 160 GSYSFSEDGKTLAYCLSSS----GS---DWTSMHFKDVATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKH 231 (1012)
Q Consensus 160 ~~~~~SPDGk~iAy~~~~~----G~---~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~ 231 (1012)
..+.|+|+|++|++.++.. +. ....||.++..+.......+.. .....++|+|+|+.|+.+....
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~------- 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM------- 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccC-------
Confidence 4689999999999988832 21 2358899987766554443332 2368899999999988775210
Q ss_pred CCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEE
Q psy1288 232 SKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLI 311 (1012)
Q Consensus 232 ~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 311 (1012)
..++.+ +...++. +..+ .......+. ..++|+.++
T Consensus 82 ---~~~v~l-------------yd~~~~~-------------i~~~--------------~~~~~n~i~--wsP~G~~l~ 116 (194)
T PF08662_consen 82 ---PAKVTL-------------YDVKGKK-------------IFSF--------------GTQPRNTIS--WSPDGRFLV 116 (194)
T ss_pred ---CcccEE-------------EcCcccE-------------eEee--------------cCCCceEEE--ECCCCCEEE
Confidence 001100 1111111 1111 011111121 234556676
Q ss_pred EEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecC
Q psy1288 312 LSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 312 ~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+....+....|.+||..+.+.... .....+..+.|||||+.++...+.
T Consensus 117 ~~g~~n~~G~l~~wd~~~~~~i~~--~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 117 LAGFGNLNGDLEFWDVRKKKKIST--FEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred EEEccCCCcEEEEEECCCCEEeec--cccCcEEEEEEcCCCCEEEEEEec
Confidence 666555557789999865443322 223345678999999998876654
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00052 Score=71.95 Aligned_cols=135 Identities=21% Similarity=0.255 Sum_probs=75.2
Q ss_pred EECCC-CceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCe-EEEEEcCCC---------CCCC
Q psy1288 408 YPSKD-GTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG-IYAIPNIRG---------GGEY 476 (1012)
Q Consensus 408 ~~s~D-G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~-~v~~~d~RG---------~g~~ 476 (1012)
+.|.+ |+.-.+++..|++..++.++|+|.+..|..-.. ........++++.-. +.+...++. ...|
T Consensus 14 l~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf~---~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~Dy 90 (264)
T COG2819 14 LKSANTGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVFN---ALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDY 90 (264)
T ss_pred eeecCCCcEEEEEecCCCCCCCCCCCcEEEEecchhhhc---hHHHHhhhhhhcCCCceEEEeccccccccccccccccC
Confidence 34444 455667888999887777799877766642111 111112333433211 122222222 1111
Q ss_pred ch----hHHhhh----hcC-CCcchHhHH-HHHHHHHHHcC-CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 477 GE----RWHDGG----RLL-NKQNVFDDF-QCAAEYLIASG-YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 477 g~----~~~~~~----~~~-~~~~~~~D~-~a~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
-. ...... ... .+...|..| ..-+.-.++.. .++.++.+++|||+||+.++.++..+|+.|....+.+|
T Consensus 91 Tp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SP 170 (264)
T COG2819 91 TPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISP 170 (264)
T ss_pred CCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecc
Confidence 00 000000 011 111223333 33344445554 47899999999999999999999999999999999988
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.031 Score=63.34 Aligned_cols=244 Identities=14% Similarity=0.130 Sum_probs=117.4
Q ss_pred CCCCCCeeeCCEEEEEEEcC-CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEE
Q psy1288 106 PKYSSPQRQGDHYFFFHNTG-LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTS 184 (1012)
Q Consensus 106 ~~~s~p~~dG~~~yy~~~~~-~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~ 184 (1012)
+.+-...++++++|-..... ..+.-..|..+...+..+.+-.. ...|. ....+.++|||++|.. ++..++ .
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~---~~~g~-~p~~i~~~~~g~~l~v-any~~g---~ 110 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV---PSGGS-SPCHIAVDPDGRFLYV-ANYGGG---S 110 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE---EESSS-CEEEEEECTTSSEEEE-EETTTT---E
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee---ccCCC-CcEEEEEecCCCEEEE-EEccCC---e
Confidence 34444456777666654322 23344455555544554443221 10111 2346789999999865 444332 5
Q ss_pred EEEEECCC-Cceece--ee------------cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec-----
Q psy1288 185 MHFKDVAT-GKEYPE--VL------------HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV----- 244 (1012)
Q Consensus 185 L~v~dl~t-g~~~~~--t~------------~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~----- 244 (1012)
+.+++++. |..... .. .......+.++|||+.++... .+. +...+|....
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-lG~---------D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-LGA---------DRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-TTT---------TEEEEEEE-TTS-TE
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-cCC---------CEEEEEEEeCCCceE
Confidence 67777765 443221 11 111235789999999876543 221 1111111110
Q ss_pred ---------cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCC--CCcccCcEEe--eccCC-Cc-eeeee-EEecCC
Q psy1288 245 ---------NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFD--NFAESNWKTL--IEENK-DD-VLDWA-TCVAND 308 (1012)
Q Consensus 245 ---------~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~--~~~~~~~~~l--~~~~~-~~-~~~~~-~~~~~~ 308 (1012)
...+.+...++|+|+.+|+..... ..|..+++. .+.......+ ++... .. ....+ ...+++
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS---NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCCC---CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 012333456999999999987543 334444443 3321111111 11111 11 12222 334667
Q ss_pred EEEEEEEcCceEEEEEEec--CCCcee--eeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 309 KLILSYIHHVKNVMHLHDL--ASGKHL--YTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl--~~G~~~--~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.||++.+.. ..|.++++ ++|+.. ..++.....-..+.++|+|+.|++.... ..--.+|.+|.
T Consensus 258 ~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~v~vf~~d~ 323 (345)
T PF10282_consen 258 FLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-SNTVSVFDIDP 323 (345)
T ss_dssp EEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-TTEEEEEEEET
T ss_pred EEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCeEEEEEEeC
Confidence 777766543 45566665 345432 1222211124567789999988876533 33345667776
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0019 Score=69.89 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=59.5
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+++|++++=.+.+ ....||....+ ..-+...-. .+....+....||||.++++--.. ++ .++++|+.
T Consensus 233 S~nGkyLAsaSkD---~Taiiw~v~~d-~~~kl~~tl----vgh~~~V~yi~wSPDdryLlaCg~---~e--~~~lwDv~ 299 (519)
T KOG0293|consen 233 SHNGKYLASASKD---STAIIWIVVYD-VHFKLKKTL----VGHSQPVSYIMWSPDDRYLLACGF---DE--VLSLWDVD 299 (519)
T ss_pred cCCCeeEeeccCC---ceEEEEEEecC-cceeeeeee----ecccCceEEEEECCCCCeEEecCc---hH--heeeccCC
Confidence 3677766654332 34667765432 221111110 112356889999999999763322 12 49999999
Q ss_pred CCceeceeecc--eeeeeeEEeeCCCeEEEEecC
Q psy1288 192 TGKEYPEVLHR--LKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 192 tg~~~~~t~~~--~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
+|+.+.+-..+ ...++.+|-|||.+++-.+.+
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d 333 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD 333 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCC
Confidence 99976532222 345789999999987655433
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=68.48 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=78.9
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHh
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFD 494 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 494 (1012)
..+..++.|.. .+.+|+|++.||-.-. ..|-...++-+++.||+|+.++.-.... ..+...++
T Consensus 32 PkpLlI~tP~~---~G~yPVilF~HG~~l~---ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~ 94 (307)
T PF07224_consen 32 PKPLLIVTPSE---AGTYPVILFLHGFNLY---NSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIK 94 (307)
T ss_pred CCCeEEecCCc---CCCccEEEEeechhhh---hHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHH
Confidence 45677888876 6899999999996432 2333345677788999999999753211 22334456
Q ss_pred HHHHHHHHHHHc--------CCCCCCcEEEEecChHHHHHHHHHhhC-CC-ceeEEEEccC
Q psy1288 495 DFQCAAEYLIAS--------GYTQSSRLAIQGGSNGGLLTAACINQR-PD-LFGAAIVQVG 545 (1012)
Q Consensus 495 D~~a~~~~l~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~-~f~a~v~~~~ 545 (1012)
+....++||-.. -..+.+++++.|||.||-.+.+++..+ .+ .|.+.|..-|
T Consensus 95 ~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDP 155 (307)
T PF07224_consen 95 SAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDP 155 (307)
T ss_pred HHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccc
Confidence 677778887654 235778999999999999988877654 22 3566665555
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG1552|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00038 Score=72.24 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=96.8
Q ss_pred CcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc-cchhhhhHHHHHHHHhCCCCCC
Q psy1288 647 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT-KQFPLTIPVIYFYLTSGPVLQR 725 (1012)
Q Consensus 647 P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~-~~~~~~~~~~~fl~~~l~~~~~ 725 (1012)
+.+|..||. +...++...++..|.... +..+.-+-|.+-|-.-|++.. ...++...+++||.+.-+.
T Consensus 61 ~~lly~hGN---a~Dlgq~~~~~~~l~~~l------n~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~g~--- 128 (258)
T KOG1552|consen 61 PTLLYSHGN---AADLGQMVELFKELSIFL------NCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRYGS--- 128 (258)
T ss_pred eEEEEcCCc---ccchHHHHHHHHHHhhcc------cceEEEEecccccccCCCcccccchhhHHHHHHHHHhhcCC---
Confidence 448888887 445567777777775531 344444445443333333322 2457777778888877541
Q ss_pred CCCCCCCc--cCCccccc------cCccceeeeccccccccchhhhcccccCCCCC-CCCCCCcccCCCCCChhhhhHhH
Q psy1288 726 YPETPNKA--DGSENVRN------QDQKLYYHYLGTDQKDDILIAEVLDMLKFNKF-TIGYFWESDYGSPANSSQFEYLL 796 (1012)
Q Consensus 726 ~~d~~~~~--GgS~g~~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 796 (1012)
..++. |-|-|... ..+ -.+++- ++++++.++.... ..-.+|+..|
T Consensus 129 ---~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL--------~SPf~S~~rv~~~~~~~~~~~d~f------------- 182 (258)
T KOG1552|consen 129 ---PERIILYGQSIGTVPTVDLASRYP--LAAVVL--------HSPFTSGMRVAFPDTKTTYCFDAF------------- 182 (258)
T ss_pred ---CceEEEEEecCCchhhhhHhhcCC--cceEEE--------eccchhhhhhhccCcceEEeeccc-------------
Confidence 23333 77766211 111 111111 3355554443221 1222333222
Q ss_pred cCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 797 GYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 797 ~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+=+.++. .|+.|+||+||+.|..||..++.++|.+++.. ++-....+.||-..
T Consensus 183 --~~i~kI~-------~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~----------~epl~v~g~gH~~~ 235 (258)
T KOG1552|consen 183 --PNIEKIS-------KITCPVLIIHGTDDEVVDFSHGKALYERCKEK----------VEPLWVKGAGHNDI 235 (258)
T ss_pred --cccCcce-------eccCCEEEEecccCceecccccHHHHHhcccc----------CCCcEEecCCCccc
Confidence 2266777 78899999999999999999999999999884 44445567888654
|
|
| >KOG2564|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00034 Score=72.51 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=71.3
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
.+.+.+.|+ .+..++..|. ...-|+++..|||....+ .|..-...+.......++++|.||+|+.--.-.+
T Consensus 52 dv~i~~~~~-t~n~Y~t~~~----~t~gpil~l~HG~G~S~L--SfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~-- 122 (343)
T KOG2564|consen 52 DVSIDGSDL-TFNVYLTLPS----ATEGPILLLLHGGGSSAL--SFAIFASELKSKIRCRCLALDLRGHGETKVENED-- 122 (343)
T ss_pred ccccCCCcc-eEEEEEecCC----CCCccEEEEeecCcccch--hHHHHHHHHHhhcceeEEEeeccccCccccCChh--
Confidence 344444444 4555555553 345689999999865554 3443323333333567799999999864221111
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhh
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
.........|+.+.++++... .+.+|.++|||+||.++...+.+
T Consensus 123 -dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 123 -DLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred -hcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 122234457888888777654 45679999999999988766544
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00097 Score=66.96 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFY 716 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl 716 (1012)
...| -+++.+.+|+.|++..+.++..++.+. +...+++||...... ...+..+++.|
T Consensus 113 l~~~-~~viaS~nDp~vp~~~a~~~A~~l~a~------------~~~~~~~GHf~~~~G---~~~~p~~~~~l 169 (171)
T PF06821_consen 113 LPFP-SIVIASDNDPYVPFERAQRLAQRLGAE------------LIILGGGGHFNAASG---FGPWPEGLDLL 169 (171)
T ss_dssp HHCC-EEEEEETTBSSS-HHHHHHHHHHHT-E------------EEEETS-TTSSGGGT---HSS-HHHHHHH
T ss_pred cCCC-eEEEEcCCCCccCHHHHHHHHHHcCCC------------eEECCCCCCcccccC---CCchHHHHHHh
Confidence 3455 488999999999999999988888664 788899999765433 23344444444
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=77.22 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=65.0
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCC-CCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC--C
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRG-GGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY--T 509 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG-~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~--~ 509 (1012)
-+||++-|-...-.+..|-......|...||.++.+..+- ..++|..-.+ ++.+|+.++++||..... .
T Consensus 34 ~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g~~ 105 (303)
T PF08538_consen 34 NALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGGHF 105 (303)
T ss_dssp SEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS----
T ss_pred cEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcccc
Confidence 3677776633333344555555666766699999999874 3344432222 346799999999998842 3
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCC-----CceeEEEEccCCCccccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRP-----DLFGAAIVQVGNPEISDC 552 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p-----~~f~a~v~~~~~~~i~d~ 552 (1012)
..++|.++|||-|.--++..+.... ..+.++|+++| |||-
T Consensus 106 ~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQAp---VSDR 150 (303)
T PF08538_consen 106 GREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAP---VSDR 150 (303)
T ss_dssp --S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE------T
T ss_pred CCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCC---CCCh
Confidence 6789999999999999988877642 46889999999 8884
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.048 Score=58.58 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=118.5
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEEC-CCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy1288 115 GDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFS-EDGKTLAYCLSSSGSDWTSMHFKDVATG 193 (1012)
Q Consensus 115 G~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~S-PDGk~iAy~~~~~G~~~~~L~v~dl~tg 193 (1012)
.+.+||+-... ..|++.+..++..+.+.-+ + ..+..+. +||+.++ .+.. .+.++|+++|
T Consensus 11 ~g~l~~~D~~~----~~i~~~~~~~~~~~~~~~~------~---~~G~~~~~~~g~l~v--~~~~-----~~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDIPG----GRIYRVDPDTGEVEVIDLP------G---PNGMAFDRPDGRLYV--ADSG-----GIAVVDPDTG 70 (246)
T ss_dssp TTEEEEEETTT----TEEEEEETTTTEEEEEESS------S---EEEEEEECTTSEEEE--EETT-----CEEEEETTTT
T ss_pred CCEEEEEEcCC----CEEEEEECCCCeEEEEecC------C---CceEEEEccCCEEEE--EEcC-----ceEEEecCCC
Confidence 67788874332 5799988876665543221 2 3344555 7765433 3332 2455699999
Q ss_pred ceeceee------cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc-----ccee---eeeeecCCC
Q psy1288 194 KEYPEVL------HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV-----APIT---SQYITNEGP 259 (1012)
Q Consensus 194 ~~~~~t~------~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~-----~~i~---~~~~s~dg~ 259 (1012)
+...+.. ........+..|||+ |+++......... .....++.....+. .++. -..|+|||+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~---~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG---IDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC---GGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSS
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc---ccccceEEECCCCeEEEEecCcccccceEECCcch
Confidence 7654322 123457789999998 7777543211000 00022333322211 1111 225899999
Q ss_pred EEEEEECCCCCCceEEEEeCCCCcc-cCcEEeeccCCCc--eeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeee
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDNFAE-SNWKTLIEENKDD--VLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTF 336 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~~~~-~~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l 336 (1012)
.||+.-. ...+|++++++.... -.-++++.+.... ....+.....+.|++.... ..+|++++. +|+....+
T Consensus 147 ~lyv~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--~~~I~~~~p-~G~~~~~i 220 (246)
T PF08450_consen 147 TLYVADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--GGRIVVFDP-DGKLLREI 220 (246)
T ss_dssp EEEEEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET--TTEEEEEET-TSCEEEEE
T ss_pred heeeccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC--CCEEEEECC-CccEEEEE
Confidence 9998654 346799998864321 0112333222221 3455555544677776553 357889998 48877778
Q ss_pred cCCceEEEeecc-cccCcEEEEEec
Q psy1288 337 PLDVGTIVGFSG-KKKYSEIFYSFM 360 (1012)
Q Consensus 337 ~~~~~~v~~~~~-spdg~~l~~~~s 360 (1012)
..|....+.+.+ .++.++|+++..
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred cCCCCCEEEEEEECCCCCEEEEEeC
Confidence 777335556666 467788988764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00043 Score=80.22 Aligned_cols=40 Identities=10% Similarity=-0.202 Sum_probs=32.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA 863 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 863 (1012)
++..|+|++||++|..||+.+++.+..+. . ...++++|+.
T Consensus 353 ~i~~PvLiI~G~~D~ivP~~~a~~l~~~~----~-------~~~l~~i~~~ 392 (414)
T PRK05077 353 RCPTPMLSGYWKNDPFSPEEDSRLIASSS----A-------DGKLLEIPFK 392 (414)
T ss_pred CCCCcEEEEecCCCCCCCHHHHHHHHHhC----C-------CCeEEEccCC
Confidence 68899999999999999999999765433 1 4467788775
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00033 Score=73.52 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=28.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHH
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEK 844 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~ 844 (1012)
...+|++|+||.+|.-||+..+.+++++|++.
T Consensus 166 ~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 166 GPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 34466889999999999999999999999997
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >KOG3847|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0026 Score=67.06 Aligned_cols=113 Identities=21% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCC--------------chhHHhhhh--cCCC---
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEY--------------GERWHDGGR--LLNK--- 489 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~--------------g~~~~~~~~--~~~~--- 489 (1012)
+.++|++|+.||-.+.. .-|+.- -.-|+++||+|+++..|-...- -..|..-.. ...+
T Consensus 115 ~~k~PvvvFSHGLggsR--t~YSa~-c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGSR--TLYSAY-CTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCccEEEEecccccch--hhHHHH-hhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 57899999999954433 234433 2346778999999999864421 112211000 0000
Q ss_pred -cch-----HhHHHHHHHHHHH---------------------cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEE
Q psy1288 490 -QNV-----FDDFQCAAEYLIA---------------------SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIV 542 (1012)
Q Consensus 490 -~~~-----~~D~~a~~~~l~~---------------------~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 542 (1012)
.+. .+.+..++.-+.+ .+.++..+++|+|||+||..++.....+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 010 1233333332221 1345678899999999998887777664 46888887
Q ss_pred ccC
Q psy1288 543 QVG 545 (1012)
Q Consensus 543 ~~~ 545 (1012)
.-+
T Consensus 271 lD~ 273 (399)
T KOG3847|consen 271 LDA 273 (399)
T ss_pred eee
Confidence 755
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00058 Score=74.74 Aligned_cols=127 Identities=16% Similarity=0.118 Sum_probs=82.1
Q ss_pred EEEECCC-CceEEEEEEEeCCCC---CCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 406 VFYPSKD-GTKIPMFILSRKGAQ---LDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 406 v~~~s~D-G~~i~~~l~~p~~~~---~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
+++..+. +.+++..++.|.... ...+.|+|++.||...... +|.. ..+.+++.||+|+.++..|+..-+..-.
T Consensus 41 i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~~~--~f~~-~A~~lAs~Gf~Va~~~hpgs~~~~~~~~ 117 (365)
T COG4188 41 ITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSYVT--GFAW-LAEHLASYGFVVAAPDHPGSNAGGAPAA 117 (365)
T ss_pred EeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCCcc--chhh-hHHHHhhCceEEEeccCCCcccccCChh
Confidence 3444432 566777777776542 1247899999999644322 3332 2345677899999999998664332222
Q ss_pred hhhhcC----CCcchHhHHHHHHHHHHHc---C----CCCCCcEEEEecChHHHHHHHHHhhCCC
Q psy1288 482 DGGRLL----NKQNVFDDFQCAAEYLIAS---G----YTQSSRLAIQGGSNGGLLTAACINQRPD 535 (1012)
Q Consensus 482 ~~~~~~----~~~~~~~D~~a~~~~l~~~---~----~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 535 (1012)
..+... ....-..|+...+++|... + .+|+.+|+++|||+||+.++.++..+.+
T Consensus 118 ~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 118 YAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 222111 1112245888888888776 3 4788999999999999998887765443
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0052 Score=62.50 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccc
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEIS 550 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~ 550 (1012)
...+.+..+++.. .++.+.++|.|+||+.+..++.+.+ .++ |.. ||.+.
T Consensus 44 ~a~~~l~~~i~~~--~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLi--NPav~ 92 (187)
T PF05728_consen 44 EAIAQLEQLIEEL--KPENVVLIGSSLGGFYATYLAERYG--LPA-VLI--NPAVR 92 (187)
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEE--cCCCC
Confidence 3444455555543 3345999999999999998887764 334 555 44443
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=69.74 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=72.4
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhC---CeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDF---NGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~---G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
+....++.|.++.+..++|+++..||-.......- ....-.++.+. ..+++.+++--.......+ ....
T Consensus 81 ~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i-~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~-------~~n~ 152 (299)
T COG2382 81 ERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRI-PRILDSLIAAGEIPPAILVGIDYIDVKKRREEL-------HCNE 152 (299)
T ss_pred ceeEEEEeCCCCCccccccEEEEeccHHHHhcCCh-HHHHHHHHHcCCCCCceEEecCCCCHHHHHHHh-------cccH
Confidence 44567788888888899999999998532222111 11223344431 2566666653211111111 1111
Q ss_pred hHhHHHH-H-HHHHHHc--CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQC-A-AEYLIAS--GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a-~-~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.++++ . +=++.+. ..-+++.-+++|.|+||+.++.++.++|++|..+++.+|
T Consensus 153 ~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sp 210 (299)
T COG2382 153 AYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSG 210 (299)
T ss_pred HHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCC
Confidence 1222211 1 1222222 124567778999999999999999999999999999999
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.018 Score=67.18 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=103.6
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCcee-ceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEY-PEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~-~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..+.|+--|.+|||....-| +|-|++..+..-. ...-.-.....++.||||+.|+-...+++..-......-
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klg----QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLG----QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccc----eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 35668889999999999988755 7777777665432 111112234789999999988766655331000000000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYI 315 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (1012)
.-+.|.+.. .++....|+..|..++-.+-+ +.+-..|+.... ++++.+...+..... +.....+.|+....
T Consensus 384 C~vTFteHt--s~Vt~v~f~~~g~~llssSLD----GtVRAwDlkRYr--NfRTft~P~p~Qfsc-vavD~sGelV~AG~ 454 (893)
T KOG0291|consen 384 CFVTFTEHT--SGVTAVQFTARGNVLLSSSLD----GTVRAWDLKRYR--NFRTFTSPEPIQFSC-VAVDPSGELVCAGA 454 (893)
T ss_pred EEEEeccCC--CceEEEEEEecCCEEEEeecC----CeEEeeeecccc--eeeeecCCCceeeeE-EEEcCCCCEEEeec
Confidence 111111111 233333366666655444422 233444443322 345555444332222 22222234444443
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEE
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIF 356 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~ 356 (1012)
.+ .-.|++|++++|+....|...++-|..++++|+++.|+
T Consensus 455 ~d-~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 455 QD-SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred cc-eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 33 35799999999998877777778888888999998544
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0055 Score=79.53 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=47.1
Q ss_pred ccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEE-EEeCCCCCCCCCcccc-chhhhhHHHHHHHH
Q psy1288 641 LKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLI-RIETKAGHGGGKPTTK-QFPLTIPVIYFYLT 718 (1012)
Q Consensus 641 ~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l-~~~p~~gHg~~~~~~~-~~~~~~~~~~fl~~ 718 (1012)
|.++++| +|+++|..|..+++..+..+...+..+ .+ .+.+++||...--... ..+.+..+.+||.+
T Consensus 293 L~~i~~P-~L~i~G~~D~ivp~~~~~~l~~~i~~a-----------~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 293 LADITCP-VLAFVGEVDDIGQPASVRGIRRAAPNA-----------EVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred hhhCCCC-EEEEEeCCCCCCCHHHHHHHHHhCCCC-----------eEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 3478899 999999999999998887765543322 33 4568899974211111 23455667789988
Q ss_pred hCCC
Q psy1288 719 SGPV 722 (1012)
Q Consensus 719 ~l~~ 722 (1012)
+-+.
T Consensus 361 ~~~~ 364 (994)
T PRK07868 361 LEGD 364 (994)
T ss_pred hccC
Confidence 7544
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.012 Score=56.05 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=50.1
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh-hcCCCcchHh-HHHHHHHHHHHcCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG-RLLNKQNVFD-DFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~-~~~~~~~~~~-D~~a~~~~l~~~~~~d 510 (1012)
-+|++.||......++... .....|+.+|+.|+.+++.--... .... +......+.. ..+.++..|.+. .+
T Consensus 15 ~tilLaHGAGasmdSt~m~-~~a~~la~~G~~vaRfefpYma~R----rtg~rkPp~~~~t~~~~~~~~~aql~~~--l~ 87 (213)
T COG3571 15 VTILLAHGAGASMDSTSMT-AVAAALARRGWLVARFEFPYMAAR----RTGRRKPPPGSGTLNPEYIVAIAQLRAG--LA 87 (213)
T ss_pred EEEEEecCCCCCCCCHHHH-HHHHHHHhCceeEEEeecchhhhc----cccCCCCcCccccCCHHHHHHHHHHHhc--cc
Confidence 4677889876555444333 344566778999998886421100 0000 0011111122 222333333333 34
Q ss_pred CCcEEEEecChHHHHHHHHHhh
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
...+.+-|+||||-++..++..
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade 109 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADE 109 (213)
T ss_pred CCceeeccccccchHHHHHHHh
Confidence 4578999999999988777654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.062 Score=62.66 Aligned_cols=209 Identities=15% Similarity=0.111 Sum_probs=115.6
Q ss_pred CCeeeCCEEEEEEEcCCCC------eeEEEEEeCCCCce--EEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCc
Q psy1288 110 SPQRQGDHYFFFHNTGLQN------HSVMYIQDSLDGEA--RVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSD 181 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~------~~~l~~~~~~~g~~--~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~ 181 (1012)
.+.+||..+||.+...... ...||+.....+.. ++|+... ++.+....+..|+||++|.+.+.....
T Consensus 176 ~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~----~~~~~~~~~~~s~d~~~l~i~~~~~~~- 250 (414)
T PF02897_consen 176 SWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP----DEPFWFVSVSRSKDGRYLFISSSSGTS- 250 (414)
T ss_dssp EECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T----TCTTSEEEEEE-TTSSEEEEEEESSSS-
T ss_pred EEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec----CCCcEEEEEEecCcccEEEEEEEcccc-
Confidence 4457888999999766444 67899988876543 3555422 123324467899999999988887766
Q ss_pred eEEEEEEECCCC-----ceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcc-----cCCCC--Cce-EEEEeecccc
Q psy1288 182 WTSMHFKDVATG-----KEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSK-----KHSKK--NRS-SAYHLTVNVA 247 (1012)
Q Consensus 182 ~~~L~v~dl~tg-----~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~-----~~~~~--~~~-l~~~~~~~~~ 247 (1012)
.+.+|++|+.++ +...+.... .....+.+. |..|++.++.....+. .+... ... ++.... .
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~ 325 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED---E 325 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S---S
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC---C
Confidence 689999999886 333333221 112333332 6678877765332221 00000 111 222110 1
Q ss_pred ceeeeeeecCCCEEEEEECCCCCCceEEEEeCC-CCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcC-ceEEEEEE
Q psy1288 248 PITSQYITNEGPQFVFKTNKDAPNYRLITIDFD-NFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHH-VKNVMHLH 325 (1012)
Q Consensus 248 ~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~l~~~ 325 (1012)
......++..+++|++..+.+. ..+|..+++. +.. ...+.......+.......+++.+++.+..- ..+.++.+
T Consensus 326 ~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~~~~~---~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~ 401 (414)
T PF02897_consen 326 DVSLEDVSLFKDYLVLSYRENG-SSRLRVYDLDDGKE---SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRY 401 (414)
T ss_dssp SEEEEEEEEETTEEEEEEEETT-EEEEEEEETT-TEE---EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEE
T ss_pred ceeEEEEEEECCEEEEEEEECC-ccEEEEEECCCCcE---EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 1222235667889988887654 5688999987 322 1222222222222222223446777766654 34689999
Q ss_pred ecCCCce
Q psy1288 326 DLASGKH 332 (1012)
Q Consensus 326 dl~~G~~ 332 (1012)
|+.+|+.
T Consensus 402 d~~t~~~ 408 (414)
T PF02897_consen 402 DLATGEL 408 (414)
T ss_dssp ETTTTCE
T ss_pred ECCCCCE
Confidence 9988764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0001 Score=77.17 Aligned_cols=56 Identities=29% Similarity=0.317 Sum_probs=46.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 797 GYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 797 ~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
..||+...+ -+-.+|++|++|++|.-+ .++..|+++||+.|+ +++++++++.+|+|
T Consensus 154 ~~sp~~~~~------~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv-------~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 154 LASPLNASD------LKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGV-------DVELHVYPGMPHGF 209 (211)
T ss_dssp TTSGGGSSC------CTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT--------EEEEEEETTEETTG
T ss_pred ccccccccc------cccCCCeeeeccccccch--HHHHHHHHHHHHCCC-------CEEEEEECCCeEEe
Confidence 457776611 144789999999999876 589999999999999 99999999999987
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.043 Score=58.82 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=105.7
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKK 234 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~ 234 (1012)
..+..+.|+|||++|+.... + ..|+++++.+++.... .........+.|+|+++.|+....++...-. .....
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~-~----g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG-D----GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec-C----cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 46788999999999987654 2 2788889887764332 2222334578999999877776543210000 00000
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 314 (1012)
....+ ......+....|+++++ +++... ....+...++.+.. ....+..... .+..+.+...+.+++..
T Consensus 85 ~~~~~---~~~~~~i~~~~~~~~~~-~~~~~~---~~~~i~~~~~~~~~---~~~~~~~~~~-~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 85 CVRTL---TGHTSYVSSVAFSPDGR-ILSSSS---RDKTIKVWDVETGK---CLTTLRGHTD-WVNSVAFSPDGTFVASS 153 (289)
T ss_pred ceEEE---eccCCcEEEEEEcCCCC-EEEEec---CCCeEEEEECCCcE---EEEEeccCCC-cEEEEEEcCcCCEEEEE
Confidence 00000 00001233345777754 444443 23467777776433 1122221212 23333333323444433
Q ss_pred EcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+ ..+.+|++.+++....+......+..+.++++++.+++... ...+..+|+
T Consensus 154 ~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~ 206 (289)
T cd00200 154 SQD--GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDL 206 (289)
T ss_pred cCC--CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEEC
Confidence 323 46788888666655555544445667888999888777654 346888888
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0019 Score=73.98 Aligned_cols=112 Identities=5% Similarity=-0.083 Sum_probs=71.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHH-HHHhC-CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIV-FLRDF-NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~ 507 (1012)
...|++|++||.........|...... ++... .+.|+++|.+|.+..... .... .......++...+++|.+..
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~--~a~~--~t~~vg~~la~lI~~L~~~~ 114 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYP--TSAA--YTKLVGKDVAKFVNWMQEEF 114 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCc--cccc--cHHHHHHHHHHHHHHHHHhh
Confidence 446899999996543222234443332 33222 599999999987642111 1000 00111234555667776543
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+.+++.++|||+||.+++.++.+.|.++..++...|
T Consensus 115 gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDP 152 (442)
T TIGR03230 115 NYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDP 152 (442)
T ss_pred CCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcC
Confidence 45788999999999999999999888988888887766
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.029 Score=63.30 Aligned_cols=200 Identities=10% Similarity=0.057 Sum_probs=118.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
.+.++.|||-+..|||-.....+--.++-++.+-+++.++. .+.+...-..-|-..|++|++-.++....+....-.+-
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence 47789999999999999887766556778888877776542 23334445688999999999987664322110001122
Q ss_pred eEEEEeeccc--------cceeeeeeecCCCEEEEEECCC-CCCceEEEEeCCCCcccCcEEeeccCCCcee-eeeEEec
Q psy1288 237 SSAYHLTVNV--------APITSQYITNEGPQFVFKTNKD-APNYRLITIDFDNFAESNWKTLIEENKDDVL-DWATCVA 306 (1012)
Q Consensus 237 ~l~~~~~~~~--------~~i~~~~~s~dg~~l~~~tn~~-~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 306 (1012)
.++.....+. ..+-...|.|.|+++.+++... ..+...|.+...... |+ |+..-+.... .-+..+.
T Consensus 428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~---~~-lVk~~dk~~~N~vfwsPk 503 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK---PS-LVKELDKKFANTVFWSPK 503 (698)
T ss_pred EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc---hh-hhhhhcccccceEEEcCC
Confidence 2322221111 1122346999999999987543 346677777643322 22 2222222222 2233456
Q ss_pred CCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCC
Q psy1288 307 NDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 307 ~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~ 362 (1012)
|+.+++.......+.|..+|.+-.. ...+..+ ....+...|+|.|..+.-..++.
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~-~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYAD-LKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred CcEEEEEEecccccceEEEecchhh-hhhccCccccccccceECCCCCEEEEeeehh
Confidence 6778877777667788888874222 2233333 23344667899887655444443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.062 Score=60.49 Aligned_cols=93 Identities=13% Similarity=0.212 Sum_probs=57.9
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCc-eEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGE-ARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~-~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
|.|+.+.|.- ...++.++..... ..+.+. +...+.-.++||.|-|||= |+..-.++|||..
T Consensus 28 pkgd~ilY~n------Gksv~ir~i~~~~~~~iYtE-------H~~~vtVAkySPsG~yiAS-----GD~sG~vRIWdtt 89 (603)
T KOG0318|consen 28 PKGDNILYTN------GKSVIIRNIDNPASVDIYTE-------HAHQVTVAKYSPSGFYIAS-----GDVSGKVRIWDTT 89 (603)
T ss_pred CCCCeEEEeC------CCEEEEEECCCccceeeecc-------ccceeEEEEeCCCceEEee-----cCCcCcEEEEecc
Confidence 6677777741 2345666654432 222222 3456778899999998872 3333478999976
Q ss_pred CCce-ecee--ecceeeeeeEEeeCCCeEEEEecC
Q psy1288 192 TGKE-YPEV--LHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 192 tg~~-~~~t--~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
..+. +.-+ .-.+....++|+.||++|+-+.+.
T Consensus 90 ~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG 124 (603)
T KOG0318|consen 90 QKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG 124 (603)
T ss_pred CcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence 5442 2211 122345789999999999988743
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.001 Score=70.01 Aligned_cols=194 Identities=15% Similarity=0.107 Sum_probs=101.7
Q ss_pred eEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEe-cCCCCCcccCCCCCceEE
Q psy1288 161 SYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSN-QEPKSKSKKHSKKNRSSA 239 (1012)
Q Consensus 161 ~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~-~~~~~~g~~~~~~~~~l~ 239 (1012)
...+||+|++||-..+ ++|.|.|.+|=+..++-.--.....+.|+.|.-.|+-.. .++...-. + -.+.-+
T Consensus 13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvw-s--l~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVW-S--LVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEE-E--eeccee
Confidence 4689999999997653 589999988766655322222346789999998776553 22110000 0 000001
Q ss_pred EEe-eccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcC
Q psy1288 240 YHL-TVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHH 317 (1012)
Q Consensus 240 ~~~-~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 317 (1012)
+-. ..+..++.+..|||||++|+..+.- ..+|-...+.+.+ -.+++.....+ ..+.. .+++...+..+.|
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF---~lriTVWSL~t~~----~~~~~~pK~~~-kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEF---DLRITVWSLNTQK----GYLLPHPKTNV-KGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecc---eeEEEEEEeccce----eEEecccccCc-eeEEECCCCceeeeeeccc
Confidence 111 1122567777899999999988753 2445555555433 23343332222 33333 2334455555544
Q ss_pred ceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 318 VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 318 g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
-..-+.+..-.+-...+.+..+.-+..++.|+|||+.+++--+-.. ..+|.|.-
T Consensus 156 Ckdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le--ykv~aYe~ 209 (447)
T KOG4497|consen 156 CKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE--YKVYAYER 209 (447)
T ss_pred HHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh--heeeeeee
Confidence 3321111111011112233344445567889999998886543221 23555544
|
|
| >KOG1553|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0019 Score=68.55 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=87.4
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
++.++.+.||.+|....+...........-+|+...|..+. |......--.+.||.|+-.|..|-++...
T Consensus 215 ~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGF-----YEvG~m~tP~~lgYsvLGwNhPGFagSTG----- 284 (517)
T KOG1553|consen 215 QRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGF-----YEVGVMNTPAQLGYSVLGWNHPGFAGSTG----- 284 (517)
T ss_pred eEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccc-----eEeeeecChHHhCceeeccCCCCccccCC-----
Confidence 56678888999998766654433333344577777774321 11111111123699999999998654321
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+++..-..+++++.+..--..++.|.++|+|-||+.+.+++..+|+. +++|..+.
T Consensus 285 --~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-kavvLDAt 343 (517)
T KOG1553|consen 285 --LPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-KAVVLDAT 343 (517)
T ss_pred --CCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-eEEEeecc
Confidence 123344555566778888877556788999999999999999999999985 88888776
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.24 Score=55.69 Aligned_cols=244 Identities=9% Similarity=0.009 Sum_probs=107.3
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
..+|+|+++|-..... ..-..|..+ ..+..+.+ . .....+ ....+.++|||++|.-+. ..+ ..|.+++
T Consensus 41 ~~spd~~~lyv~~~~~--~~i~~~~~~-~~g~l~~~-~--~~~~~~--~p~~i~~~~~g~~l~v~~-~~~---~~v~v~~ 108 (330)
T PRK11028 41 VISPDKRHLYVGVRPE--FRVLSYRIA-DDGALTFA-A--ESPLPG--SPTHISTDHQGRFLFSAS-YNA---NCVSVSP 108 (330)
T ss_pred EECCCCCEEEEEECCC--CcEEEEEEC-CCCceEEe-e--eecCCC--CceEEEECCCCCEEEEEE-cCC---CeEEEEE
Confidence 3458888776643321 223345554 23332222 1 111111 235788999999886543 322 2677888
Q ss_pred CCC-Cceec--eeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEE------EEeeccccceeeeeeecCCC
Q psy1288 190 VAT-GKEYP--EVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSA------YHLTVNVAPITSQYITNEGP 259 (1012)
Q Consensus 190 l~t-g~~~~--~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~------~~~~~~~~~i~~~~~s~dg~ 259 (1012)
++. |.... ..... .......++|||+.|+.........-..+......+. .....+ .+.....++|||+
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~ 187 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQ 187 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCC
Confidence 763 32211 11111 1224568999998876654321100000000000000 000000 1112335899999
Q ss_pred EEEEEECCCCCCceEEEEeCC--CCcccCcEEe--eccC---CCceeeeeEEecCCEEEEEEEcCceEEEEEEecCC-Cc
Q psy1288 260 QFVFKTNKDAPNYRLITIDFD--NFAESNWKTL--IEEN---KDDVLDWATCVANDKLILSYIHHVKNVMHLHDLAS-GK 331 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~--~~~~~~~~~l--~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~-G~ 331 (1012)
.+|+.... ...|..++++ +++......+ ++.. +..........+++.+++... +...|.+++++. +.
T Consensus 188 ~lyv~~~~---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 188 YAYCVNEL---NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--TASLISVFSVSEDGS 262 (330)
T ss_pred EEEEEecC---CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--CCCeEEEEEEeCCCC
Confidence 88887532 2345555543 2221111111 1111 111111222345566776532 234566666632 22
Q ss_pred ee---eeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 332 HL---YTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 332 ~~---~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.. ..+... .....+.++|||+.|+.+... ..--.+|.+|.
T Consensus 263 ~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~-~~~v~v~~~~~ 305 (330)
T PRK11028 263 VLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQK-SHHISVYEIDG 305 (330)
T ss_pred eEEEeEEEecc-ccCCceEECCCCCEEEEEEcc-CCcEEEEEEcC
Confidence 11 111111 112356788999988876432 22234555554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.42 Score=57.21 Aligned_cols=200 Identities=13% Similarity=0.040 Sum_probs=97.4
Q ss_pred ceEeeeEEECCC-CcEEEEEEeCCCCceEEEEEEECCCCcee---------ceeecceeeeeeEEeeCCCeEEEEec-CC
Q psy1288 156 TVSLGSYSFSED-GKTLAYCLSSSGSDWTSMHFKDVATGKEY---------PEVLHRLKFVSIAWTHDHKGVFYSNQ-EP 224 (1012)
Q Consensus 156 ~~~i~~~~~SPD-Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~---------~~t~~~~~~~~~~WSpDG~~l~y~~~-~~ 224 (1012)
...+..++|||+ ++.|| +.+.+| .|.+||+.++... .+.........++|+|++..++.+.. +.
T Consensus 74 ~~~V~~lafsP~~~~lLA-SgS~Dg----tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILA-SGSEDL----TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred CCCEEEEEEcCCCCCEEE-EEeCCC----eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 346889999998 55554 444433 7899998754311 01112234578999999988766543 21
Q ss_pred CCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE
Q psy1288 225 KSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC 304 (1012)
Q Consensus 225 ~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (1012)
...-. +..... ..+... ....+....|+++|..|+..+. ...|..+|+.++.. ...+..+........+..
T Consensus 149 tIrIW-Dl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rsg~~--i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 149 FVNIW-DIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRKQEI--ASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred eEEEE-ECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCCCcE--EEEEecccCCceeEEEEe
Confidence 10000 000000 111100 0123444469999997765542 24577778876541 222322221111111111
Q ss_pred ----ecCCEEEEEEEcC-ceEEEEEEecCC-CceeeeecCC--ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 305 ----VANDKLILSYIHH-VKNVMHLHDLAS-GKHLYTFPLD--VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 305 ----~~~~~l~~~~~~~-g~~~l~~~dl~~-G~~~~~l~~~--~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+++.++....++ ...++.+||+.+ ++....+... .+.+. +.++++.+.++++..+. ..++.+++
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD---~tIr~~e~ 292 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGD---GNCRYYQH 292 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECC---CeEEEEEc
Confidence 2434444433332 235799999863 3333333322 22222 23445545555554332 34666666
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0018 Score=66.76 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=45.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
...+|+|++||++|+.||+.++.++.+.|++.|. .|++..++ -||.+...
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~-------~v~~~~~~-~GH~i~~e 193 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEALAEYLTASGA-------DVEVRWHE-GGHEIPPE 193 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCC-------CEEEEEec-CCCcCCHH
Confidence 3449999999999999999999999999999988 99999998 89998753
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0038 Score=66.39 Aligned_cols=51 Identities=25% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+++.|+|+..|++|+.+|..+-..+-++|...++ .+.+.+|++..|||..+
T Consensus 156 ~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~-------~~~~~~y~ga~H~F~~~ 206 (236)
T COG0412 156 KIKVPVLLHLAGEDPYIPAADVDALAAALEDAGV-------KVDLEIYPGAGHGFAND 206 (236)
T ss_pred cccCcEEEEecccCCCCChhHHHHHHHHHHhcCC-------CeeEEEeCCCccccccC
Confidence 7779999999999999999999999999999987 88999999999999876
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.019 Score=64.07 Aligned_cols=115 Identities=14% Similarity=0.197 Sum_probs=69.4
Q ss_pred EEEEE-eCCCCCCCCCcEEEEEcCCC-CCCCCCCc---ChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcch
Q psy1288 418 MFILS-RKGAQLDGNNPCILYGYGGF-AVSLQPGF---SVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492 (1012)
Q Consensus 418 ~~l~~-p~~~~~~~~~P~vv~~hGg~-~~~~~~~~---~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~ 492 (1012)
.|++. |.... .+..|+|+|+|||. .....+.. ...+...+. ...+++.||.....- .........
T Consensus 108 ~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~-------~~~~~yPtQ 177 (374)
T PF10340_consen 108 YWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSD-------EHGHKYPTQ 177 (374)
T ss_pred EEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccc-------cCCCcCchH
Confidence 56665 55433 23469999999983 22222221 112233343 458888888654300 011222344
Q ss_pred HhHHHHHHHHHH-HcCCCCCCcEEEEecChHHHHHHHHHhhC----C-CceeEEEEccC
Q psy1288 493 FDDFQCAAEYLI-ASGYTQSSRLAIQGGSNGGLLTAACINQR----P-DLFGAAIVQVG 545 (1012)
Q Consensus 493 ~~D~~a~~~~l~-~~~~~d~~~i~i~G~S~GG~l~~~~~~~~----p-~~f~a~v~~~~ 545 (1012)
..+.++..++|+ ..+ .+.|.++|.|+||.+++..+... + ..-+.+|+.+|
T Consensus 178 L~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISP 233 (374)
T PF10340_consen 178 LRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISP 233 (374)
T ss_pred HHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECC
Confidence 568888889999 444 36899999999999998775432 1 12367888888
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.3 Score=52.98 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=67.2
Q ss_pred ee-eCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 112 QR-QGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 112 ~~-dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.| ++.-++|-|+.+ .-+++.+..+++..+.+.+ +.+....+...|||||++|.-+.+.-...+-.|-|+|+
T Consensus 13 ~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a----~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 13 HPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWA----PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred CCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcC----CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 35 445677777665 3355556666665554442 23556778899999999998777765555568999999
Q ss_pred CCCceeceee--cceeeeeeEEeeCCCeEEEE
Q psy1288 191 ATGKEYPEVL--HRLKFVSIAWTHDHKGVFYS 220 (1012)
Q Consensus 191 ~tg~~~~~t~--~~~~~~~~~WSpDG~~l~y~ 220 (1012)
+.+-.+...+ .+.+-..+.|.|||+.|+..
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 8444333232 23344678999999988765
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0095 Score=63.80 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=72.0
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSK 233 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~ 233 (1012)
|+..+.+.+|-+||..++=. +. | ...|.++|+++|.-.++. ....+++-..|||||..|+-.+-+..-.-. +
T Consensus 194 gh~pVtsmqwn~dgt~l~tA-S~-g--sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw---~ 266 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTA-SF-G--SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW---Q 266 (445)
T ss_pred CCceeeEEEEcCCCCEEeec-cc-C--cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeee---h
Confidence 45678899999999887643 33 2 247889999998876655 444556789999999988777644210000 0
Q ss_pred CCceEEEEee--ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCC
Q psy1288 234 KNRSSAYHLT--VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFD 280 (1012)
Q Consensus 234 ~~~~l~~~~~--~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~ 280 (1012)
+++. +..+. .....+....|+|+|..|+|..... ..||.+...
T Consensus 267 e~q~-wt~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~ 311 (445)
T KOG2139|consen 267 ENQS-WTKERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFD 311 (445)
T ss_pred hccc-ceecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEeec
Confidence 0000 00000 0112344557999999999988643 457776654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.2 Score=53.50 Aligned_cols=228 Identities=17% Similarity=0.102 Sum_probs=114.7
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCce-EEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA-RVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~-~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.++|++++....+ +.-.+|-... +.. ..+.. ....+..+.|+|++++|+.... + ..|+++|+
T Consensus 18 ~~~~~~l~~~~~~---g~i~i~~~~~--~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~-~----~~i~i~~~ 80 (289)
T cd00200 18 SPDGKLLATGSGD---GTIKVWDLET--GELLRTLKG-------HTGPVRDVAASADGTYLASGSS-D----KTIRLWDL 80 (289)
T ss_pred cCCCCEEEEeecC---cEEEEEEeeC--CCcEEEEec-------CCcceeEEEECCCCCEEEEEcC-C----CeEEEEEc
Confidence 3677877765532 3455564432 222 22211 2234568999999988877654 2 27999999
Q ss_pred CCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCC
Q psy1288 191 ATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDA 269 (1012)
Q Consensus 191 ~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~ 269 (1012)
.+++... ..........+.|+|+++.|+....+....- -+.. ..+...........+....+++++..++...
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---- 154 (289)
T cd00200 81 ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV-WDVE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSS---- 154 (289)
T ss_pred CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEE-EECC-CcEEEEEeccCCCcEEEEEEcCcCCEEEEEc----
Confidence 8865433 2222224577899999764444332211000 0000 0000000000012233445777766555443
Q ss_pred CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecc
Q psy1288 270 PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSG 348 (1012)
Q Consensus 270 ~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~ 348 (1012)
.+..+..+|+..... ...+ ... ...+..+.+. +++.+++... ...+.+|++..++....+......+..+.+
T Consensus 155 ~~~~i~i~d~~~~~~--~~~~-~~~-~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 155 QDGTIKLWDLRTGKC--VATL-TGH-TGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred CCCcEEEEEcccccc--ceeE-ecC-ccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchhhcCCceEEEEE
Confidence 134566777754431 1222 221 1122333333 3235555443 356888898666654444333345667788
Q ss_pred cccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 349 KKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 349 spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++++. +++..+ ....++.+|+
T Consensus 228 ~~~~~-~~~~~~---~~~~i~i~~~ 248 (289)
T cd00200 228 SPDGY-LLASGS---EDGTIRVWDL 248 (289)
T ss_pred cCCCc-EEEEEc---CCCcEEEEEc
Confidence 88844 444443 2346888887
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.068 Score=63.03 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=114.6
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|+|.++. ....+.+-.||.........++|-. +...+....|+|+|+.|+ +.+.++ .++++|+
T Consensus 211 fs~d~~~l~---s~s~D~tiriwd~~~~~~~~~~l~g-------H~~~v~~~~f~p~g~~i~-Sgs~D~----tvriWd~ 275 (456)
T KOG0266|consen 211 FSPDGSYLL---SGSDDKTLRIWDLKDDGRNLKTLKG-------HSTYVTSVAFSPDGNLLV-SGSDDG----TVRIWDV 275 (456)
T ss_pred ECCCCcEEE---EecCCceEEEeeccCCCeEEEEecC-------CCCceEEEEecCCCCEEE-EecCCC----cEEEEec
Confidence 458888333 2233345666655221222333322 455678999999995555 443333 8999999
Q ss_pred CCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc--c-ceeeeeeecCCCEEEEEEC
Q psy1288 191 ATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV--A-PITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 191 ~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~--~-~i~~~~~s~dg~~l~~~tn 266 (1012)
.+|+... +.......+..++++||+.|+-.+.+....-. +.......+....... . .+....++|+|+.|+..+.
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW-DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE-ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 9988754 33334456788999999877665433211000 0000010000110000 1 2345568899998888763
Q ss_pred CCCCCceEEEEeCCCCcccCcEEeeccCCC--ceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEE
Q psy1288 267 KDAPNYRLITIDFDNFAESNWKTLIEENKD--DVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTI 343 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v 343 (1012)
+..+...++..+.. ......+... -.........+..++.. ..+ .-+++|++.++.....+... ...+
T Consensus 355 ----d~~~~~w~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~sg-~~d--~~v~~~~~~s~~~~~~l~~h~~~~~ 425 (456)
T KOG0266|consen 355 ----DRTLKLWDLRSGKS--VGTYTGHSNLVRCIFSPTLSTGGKLIYSG-SED--GSVYVWDSSSGGILQRLEGHSKAAV 425 (456)
T ss_pred ----CCeEEEEEccCCcc--eeeecccCCcceeEecccccCCCCeEEEE-eCC--ceEEEEeCCccchhhhhcCCCCCce
Confidence 33455556654431 1222222211 11111122232333333 332 45778888766655555444 4445
Q ss_pred EeecccccCcEEEEEe
Q psy1288 344 VGFSGKKKYSEIFYSF 359 (1012)
Q Consensus 344 ~~~~~spdg~~l~~~~ 359 (1012)
...++++....++...
T Consensus 426 ~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 426 SDLSSHPTENLIASSS 441 (456)
T ss_pred eccccCCCcCeeeecC
Confidence 5667777666555443
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.025 Score=64.35 Aligned_cols=57 Identities=14% Similarity=0.317 Sum_probs=42.4
Q ss_pred cccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCC
Q psy1288 640 ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 697 (1012)
Q Consensus 640 ~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg 697 (1012)
+|.++++| |+++.|..|..+|+.|++.|...+......-...+..+++.+.+.-||-
T Consensus 292 DLr~Ir~P-iivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 292 DLRNIRSP-IIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred ehhhCCCC-EEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 45689999 9999999999999999988775443221111122777889999999995
|
Their function is unknown. |
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.067 Score=62.72 Aligned_cols=196 Identities=12% Similarity=0.139 Sum_probs=107.8
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHS 232 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~ 232 (1012)
+..++...+.||||++||-..+ ...+.|||..+|.-.. .+-+....+.+.|+.+|+.++-.+.++..+.. ...
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~e-----DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAE-----DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cccceeeEEECCCCcEEEeccC-----CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 3567889999999999996544 3378999998886432 22333456889999999988777665421111 000
Q ss_pred CCCceEEEEeeccccceeee--eeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEE
Q psy1288 233 KKNRSSAYHLTVNVAPITSQ--YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKL 310 (1012)
Q Consensus 233 ~~~~~l~~~~~~~~~~i~~~--~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 310 (1012)
..+-+. | ..-.+++.. .+.|.|. |.+.... ..|.|+..++.++. ..+++...+..+..-.....++.|
T Consensus 424 YrNfRT-f---t~P~p~QfscvavD~sGe-lV~AG~~--d~F~IfvWS~qTGq---llDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 424 YRNFRT-F---TSPEPIQFSCVAVDPSGE-LVCAGAQ--DSFEIFVWSVQTGQ---LLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred cceeee-e---cCCCceeeeEEEEcCCCC-EEEeecc--ceEEEEEEEeecCe---eeehhcCCCCcceeeEEccccCeE
Confidence 000000 0 000222222 2344454 3333322 46899999998876 355555554444432223333444
Q ss_pred EEEEEcCceEEEEEEecCC-CceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 311 ILSYIHHVKNVMHLHDLAS-GKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 311 ~~~~~~~g~~~l~~~dl~~-G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+-.+-+ ..+.+|++=+ ....+.+... ..+..++++|||++|++..-. .+|-.+|.
T Consensus 494 aS~SWD---kTVRiW~if~s~~~vEtl~i~-sdvl~vsfrPdG~elaVaTld----gqItf~d~ 549 (893)
T KOG0291|consen 494 ASGSWD---KTVRIWDIFSSSGTVETLEIR-SDVLAVSFRPDGKELAVATLD----GQITFFDI 549 (893)
T ss_pred Eecccc---ceEEEEEeeccCceeeeEeec-cceeEEEEcCCCCeEEEEEec----ceEEEEEh
Confidence 332222 2355566521 1223334332 345578899999999987644 23444554
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00025 Score=77.53 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=88.6
Q ss_pred CCcEEEEEeCCCCCCCCCcc----ccchhhhhHHHHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeecccccc
Q psy1288 683 TNPLLIRIETKAGHGGGKPT----TKQFPLTIPVIYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQK 756 (1012)
Q Consensus 683 ~~~~~l~~~p~~gHg~~~~~----~~~~~~~~~~~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~ 756 (1012)
.+++++....+|..+....+ ....++..++++|+.++ .- . .-+++ |.||+ ++.++.+...+
T Consensus 56 ~GY~vV~~D~RG~g~S~G~~~~~~~~e~~D~~d~I~W~~~Q-pw----s-~G~VGm~G~SY~-------G~~q~~~A~~~ 122 (272)
T PF02129_consen 56 RGYAVVVQDVRGTGGSEGEFDPMSPNEAQDGYDTIEWIAAQ-PW----S-NGKVGMYGISYG-------GFTQWAAAARR 122 (272)
T ss_dssp TT-EEEEEE-TTSTTS-S-B-TTSHHHHHHHHHHHHHHHHC-TT----E-EEEEEEEEETHH-------HHHHHHHHTTT
T ss_pred CCCEEEEECCcccccCCCccccCChhHHHHHHHHHHHHHhC-CC----C-CCeEEeeccCHH-------HHHHHHHHhcC
Confidence 78999999988765433222 22467888899999886 22 1 22444 88998 55555554545
Q ss_pred ccchhh-----hcccccC-CCCCC------CCCCCc---c------cCCCCC----------------------------
Q psy1288 757 DDILIA-----EVLDMLK-FNKFT------IGYFWE---S------DYGSPA---------------------------- 787 (1012)
Q Consensus 757 ~~~~~~-----~~~~~~~-~~~~~------~~~~~~---~------~~g~~~---------------------------- 787 (1012)
|..++| +..|+.. ..... ....|. . ......
T Consensus 123 ~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (272)
T PF02129_consen 123 PPHLKAIVPQSGWSDLYRDSIYPGGAFRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYW 202 (272)
T ss_dssp -TTEEEEEEESE-SBTCCTSSEETTEEBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHH
T ss_pred CCCceEEEecccCCcccccchhcCCcccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHH
Confidence 555544 4555544 11100 001220 0 000000
Q ss_pred -----ChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHh-cCCCCCCCCEEEEEeC
Q psy1288 788 -----NSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKL-RDYPHQTNPLLIRIET 861 (1012)
Q Consensus 788 -----~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 861 (1012)
.+..-+++.+.++..+++ ++..|+|+++|-.|.-.. .++.+.|++|+..+ . +..|++-|
T Consensus 203 ~~~~~~~~~~~~w~~~~~~~~~~-------~i~vP~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~-------~~~Liigp 267 (272)
T PF02129_consen 203 DEWLDHPPYDPFWQERSPSERLD-------KIDVPVLIVGGWYDTLFL-RGALRAYEALRAPGSK-------PQRLIIGP 267 (272)
T ss_dssp HHHHHT-SSSHHHHTTBHHHHHG-------G--SEEEEEEETTCSSTS-HHHHHHHHHHCTTSTC--------EEEEEES
T ss_pred HHHHhCCCcCHHHHhCChHHHHh-------hCCCCEEEecccCCcccc-hHHHHHHHHhhcCCCC-------CCEEEEeC
Confidence 001123445566665556 888999999999997666 89999999999987 5 78999887
Q ss_pred CCCCC
Q psy1288 862 KAGHG 866 (1012)
Q Consensus 862 ~~gH~ 866 (1012)
.. |+
T Consensus 268 w~-H~ 271 (272)
T PF02129_consen 268 WT-HG 271 (272)
T ss_dssp ES-TT
T ss_pred CC-CC
Confidence 64 75
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.027 Score=55.16 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=78.8
Q ss_pred CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccccccc
Q psy1288 487 LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKN 566 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~ 566 (1012)
.+-...++|.++.+...+... ++.+.+.+||.|+..++..+.+....+++++..+|
T Consensus 37 ~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAp--------------------- 92 (181)
T COG3545 37 DWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAP--------------------- 92 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecC---------------------
Confidence 344556778877776555432 45588999999999999888775556777777777
Q ss_pred CcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCC
Q psy1288 567 NMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQY 646 (1012)
Q Consensus 567 ~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~ 646 (1012)
+ |+ ..+. ........++|+...+ ...
T Consensus 93 ----p-d~----------------------------------------~~~~--~~~~~~~tf~~~p~~~-------lpf 118 (181)
T COG3545 93 ----P-DV----------------------------------------SRPE--IRPKHLMTFDPIPREP-------LPF 118 (181)
T ss_pred ----C-Cc----------------------------------------cccc--cchhhccccCCCcccc-------CCC
Confidence 0 00 0000 0001123344444433 456
Q ss_pred CcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCC
Q psy1288 647 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 698 (1012)
Q Consensus 647 P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~ 698 (1012)
| .++++..+|+.|+++++..+..+.-++ ++.-..+||--
T Consensus 119 p-s~vvaSrnDp~~~~~~a~~~a~~wgs~------------lv~~g~~GHiN 157 (181)
T COG3545 119 P-SVVVASRNDPYVSYEHAEDLANAWGSA------------LVDVGEGGHIN 157 (181)
T ss_pred c-eeEEEecCCCCCCHHHHHHHHHhccHh------------heecccccccc
Confidence 6 999999999999999998888777665 55556677754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.2 Score=57.08 Aligned_cols=249 Identities=10% Similarity=0.027 Sum_probs=109.1
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCC-CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDD-GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~-g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
++||+++|-.-... ..+...+..+.+....+....+..+ ...++.+..-||++...++.+...| +||++|.
T Consensus 86 s~DG~~~~v~n~~~----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~----~I~vVdy 157 (369)
T PF02239_consen 86 SPDGKYVYVANYEP----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG----EIWVVDY 157 (369)
T ss_dssp --TTTEEEEEEEET----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT----EEEEEET
T ss_pred cCCCCEEEEEecCC----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC----eEEEEEe
Confidence 48888776443333 3455666555443333332222111 1235677888999998888887665 8999998
Q ss_pred CCCceeceee-cc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecccccee---eeeeecCCCEEEEEE
Q psy1288 191 ATGKEYPEVL-HR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPIT---SQYITNEGPQFVFKT 265 (1012)
Q Consensus 191 ~tg~~~~~t~-~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~---~~~~s~dg~~l~~~t 265 (1012)
...+....+. .. .......|+|||++++-........+..+..+ ..+......+....+ .....|..+.++...
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeecc-ceEEEEeeccccccccccccccCCCcceEEeec
Confidence 7765433222 11 12356899999998766543221111111111 122221111111100 111222322332222
Q ss_pred CCCCCCceEEEEeCCC-CcccCcEE---eeccCCCceeeeeEEecCCEEEEEEE-cCceEEEEEEecCCCceeeeecCC-
Q psy1288 266 NKDAPNYRLITIDFDN-FAESNWKT---LIEENKDDVLDWATCVANDKLILSYI-HHVKNVMHLHDLASGKHLYTFPLD- 339 (1012)
Q Consensus 266 n~~~~~~~L~~~dl~~-~~~~~~~~---l~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~l~~~dl~~G~~~~~l~~~- 339 (1012)
........++..+... -....|+. +-..... +-....++++++++... ......+.++|.++-+....+...
T Consensus 237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g--lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~ 314 (369)
T PF02239_consen 237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG--LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP 314 (369)
T ss_dssp BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred cccceecccccCCccccchhhcCeEEEEEECCCCc--ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence 2211111122222211 11122332 2222222 11122445567777622 223568899998665443344322
Q ss_pred ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 340 VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 340 ~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+..+.+++||++++++.-.... .|..+|.
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~~~~~--~i~v~D~ 346 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVWDGNG--AIVVYDA 346 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE--TT--EEEEEET
T ss_pred CCcEeccEECCCCCEEEEEEecCCC--EEEEEEC
Confidence 2235578899999999998765433 8999998
|
... |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0016 Score=47.66 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=22.6
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEE
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHF 187 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v 187 (1012)
....+.|||||++|+|+..+.+....+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 467899999999999999998333567875
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.024 Score=60.01 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=79.6
Q ss_pred EEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhh
Q psy1288 406 VFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGR 485 (1012)
Q Consensus 406 v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 485 (1012)
+.+.+.+|+.+..-..+-+......+..+||-+||.|+...+..|- ...|.+.|+.++.+|++|.+....- .
T Consensus 9 ~k~~~~~~~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH~DFkYi---~~~l~~~~iR~I~iN~PGf~~t~~~-----~ 80 (297)
T PF06342_consen 9 VKFQAENGKIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSHNDFKYI---RPPLDEAGIRFIGINYPGFGFTPGY-----P 80 (297)
T ss_pred EEcccccCceEEEEEEEEecCCCCCCceeEEEecCCCCCccchhhh---hhHHHHcCeEEEEeCCCCCCCCCCC-----c
Confidence 3345556666655544444433344556899999999877654443 3567788999999999997633111 0
Q ss_pred cCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+-.+...-+..|.+.-.++ +++.++|||.|+-.++.++..+|- .+.++..|
T Consensus 81 --~~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~~--~g~~lin~ 135 (297)
T PF06342_consen 81 --DQQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHPL--HGLVLINP 135 (297)
T ss_pred --ccccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCcc--ceEEEecC
Confidence 01111123333345555554444 788999999999999999988763 34444433
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0032 Score=71.01 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=41.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||+||++|.-||+.++..++.+++.. ...++++++.||.+.
T Consensus 249 ~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~---------~~~l~~~~~a~H~~~ 295 (330)
T PLN02298 249 DVSIPFIVLHGSADVVTDPDVSRALYEEAKSE---------DKTIKIYDGMMHSLL 295 (330)
T ss_pred hcCCCEEEEecCCCCCCCHHHHHHHHHHhccC---------CceEEEcCCcEeeee
Confidence 67799999999999999999999998888654 357889999999964
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.2 Score=59.94 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=46.6
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
...+..+.|+|+|..++.+.+.+| .|.++|+.+++............+++|+|||+.|+-...+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~Dg----tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDS----FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCC----eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC
Confidence 346889999999999877766554 7999999988754321122345789999999987665433
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.01 Score=64.18 Aligned_cols=121 Identities=20% Similarity=0.240 Sum_probs=80.7
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC----CCcChhHHHHHHhCCeEEEEEcCCCCCCCc
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ----PGFSVTKIVFLRDFNGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~----~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g 477 (1012)
..+++.+.. |+..|....+.-++. .+.-.|++.-|....... ...+..+.......|..|+++||||-|..
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a---~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S- 185 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEA---KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSS- 185 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCC---CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccC-
Confidence 456777666 899998776653332 344567766664221111 11234556666667999999999996632
Q ss_pred hhHHhhhhcCCCcchHhHHHHHHHHHHHcCC-CCCCcEEEEecChHHHHHHHHHhhC
Q psy1288 478 ERWHDGGRLLNKQNVFDDFQCAAEYLIASGY-TQSSRLAIQGGSNGGLLTAACINQR 533 (1012)
Q Consensus 478 ~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~ 533 (1012)
.|.. .....+.|..++++||.++.. ..+++|.+.|+|.||.++..++.++
T Consensus 186 -----~G~~-s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 186 -----TGPP-SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -----CCCC-CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1111 123456789999999998654 6899999999999999887766553
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=57.78 Aligned_cols=236 Identities=16% Similarity=0.195 Sum_probs=119.0
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCc----eEEEcCCCCCCCCCceEeeeEEECCCCcEEE-EEEeC-----CCC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGE----ARVFLDPNNLSDDGTVSLGSYSFSEDGKTLA-YCLSS-----SGS 180 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~----~~~L~D~n~la~~g~~~i~~~~~SPDGk~iA-y~~~~-----~G~ 180 (1012)
++|.|.|++=....| -.|| ||+ .+.+.- -.+....+||.-++|+ |+... +..
T Consensus 218 wSP~GTYL~t~Hk~G----I~lW-----GG~~f~r~~RF~H---------p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG----IALW-----GGESFDRIQRFYH---------PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN 279 (698)
T ss_pred ecCCceEEEEEeccc----eeee-----cCccHHHHHhccC---------CCceeeecCCccceEEEecCCccccCcccC
Confidence 349999888666544 4556 332 122222 2355678999999986 33222 234
Q ss_pred ceEEEEEEECCCCceece-ee---cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeec
Q psy1288 181 DWTSMHFKDVATGKEYPE-VL---HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITN 256 (1012)
Q Consensus 181 ~~~~L~v~dl~tg~~~~~-t~---~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~ 256 (1012)
+..+|.|+|+.||...+- .. .-....-+.||.|+++++-...++-. ..+. ..-.++-..+.+..+|....|+|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sis--IyEt-psf~lld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSIS--IYET-PSFMLLDKKSLKISGIRDFSWSP 356 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEE--EEec-CceeeecccccCCccccCcccCC
Confidence 556999999999987541 11 11123568999999987766532100 0000 00111111122334555445999
Q ss_pred CCCEEEEEECCC---CCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCc-------eEEEEEEe
Q psy1288 257 EGPQFVFKTNKD---APNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHV-------KNVMHLHD 326 (1012)
Q Consensus 257 dg~~l~~~tn~~---~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~l~~~d 326 (1012)
-+.-|++-+... +.+..|+.++ +...-..+.|+.- .+-.+.|. ..|++|.+-..+.. .+++-++.
T Consensus 357 ~~~llAYwtpe~~~~parvtL~evP--s~~~iRt~nlfnV-sDckLhWQ--k~gdyLcvkvdR~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 357 TSNLLAYWTPETNNIPARVTLMEVP--SKREIRTKNLFNV-SDCKLHWQ--KSGDYLCVKVDRHTKSKVKGQFSNLEIFR 431 (698)
T ss_pred CcceEEEEcccccCCcceEEEEecC--ccceeeeccceee-eccEEEec--cCCcEEEEEEEeeccccccceEeeEEEEE
Confidence 999998887532 2234444443 2210000111110 01112222 23356665443221 24555555
Q ss_pred cCCCc-eeeeecCCceEEEeecccccCcEEEEEe-cCCCCCcEEEEEeC
Q psy1288 327 LASGK-HLYTFPLDVGTIVGFSGKKKYSEIFYSF-MSFLQPTIIFHCNI 373 (1012)
Q Consensus 327 l~~G~-~~~~l~~~~~~v~~~~~spdg~~l~~~~-ss~~~p~~l~~~d~ 373 (1012)
+.... ....+.+ ...+..++|.|.|+.+++.. +......+.|.+..
T Consensus 432 ireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 432 IREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred eeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 52211 1112222 23456899999998876544 44444556777664
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0058 Score=69.54 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=40.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+||+||++|.-||+..+.+++..+... ...++++|+.||.+.
T Consensus 277 ~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~~---------~~~l~~i~~~gH~l~ 323 (349)
T PLN02385 277 EVSLPLLILHGEADKVTDPSVSKFLYEKASSS---------DKKLKLYEDAYHSIL 323 (349)
T ss_pred cCCCCEEEEEeCCCCccChHHHHHHHHHcCCC---------CceEEEeCCCeeecc
Confidence 67799999999999999999999998877543 357888999999975
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.29 Score=57.94 Aligned_cols=167 Identities=11% Similarity=0.104 Sum_probs=82.9
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
...+..+.|+|++..++.+...++ .|.++|+++++..... .......+++|+|||+.|+....+....-. +...
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~Dg----tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw-D~rs 199 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADM----VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII-DPRD 199 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCC----EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEE-ECCC
Confidence 356888999999865555555443 7999999988764322 122335789999999877766544211000 0000
Q ss_pred CceEEEEeeccc-cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC-CceeeeeEEecCCEEEE
Q psy1288 235 NRSSAYHLTVNV-APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK-DDVLDWATCVANDKLIL 312 (1012)
Q Consensus 235 ~~~l~~~~~~~~-~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ 312 (1012)
. +.+....... .......|.++++.|+...........+...|+.+... ......... ......+...+++.+++
T Consensus 200 g-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 200 G-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQSSALFIPFFDEDTNLLYI 276 (493)
T ss_pred C-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCCCCceEEEEEcCCCCEEEE
Confidence 0 0111000000 01112347777776654432222345677777765431 111111111 11111122234345555
Q ss_pred EEEcCceEEEEEEecCCCce
Q psy1288 313 SYIHHVKNVMHLHDLASGKH 332 (1012)
Q Consensus 313 ~~~~~g~~~l~~~dl~~G~~ 332 (1012)
.... ...|.+|++.+++.
T Consensus 277 ggkg--Dg~Iriwdl~~~~~ 294 (493)
T PTZ00421 277 GSKG--EGNIRCFELMNERL 294 (493)
T ss_pred EEeC--CCeEEEEEeeCCce
Confidence 4332 34678888866543
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0023 Score=68.58 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=37.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+++.|+||++|++|.-||+.++++++..+. .+.++..++.||.+.-
T Consensus 196 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~~ 241 (257)
T TIGR03611 196 RIQHPVLLIANRDDMLVPYTQSLRLAAALP-----------NAQLKLLPYGGHASNV 241 (257)
T ss_pred ccCccEEEEecCcCcccCHHHHHHHHHhcC-----------CceEEEECCCCCCccc
Confidence 778999999999999999999888876543 2356778999998653
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.75 E-value=1.5 Score=49.70 Aligned_cols=241 Identities=15% Similarity=0.058 Sum_probs=104.0
Q ss_pred eeeEEECCCCcEEEEEEeCC--CCceEEEEEEECCCCceeceee---cceeeeeeEEeeCCCeEEEEecCCCCCcc--cC
Q psy1288 159 LGSYSFSEDGKTLAYCLSSS--GSDWTSMHFKDVATGKEYPEVL---HRLKFVSIAWTHDHKGVFYSNQEPKSKSK--KH 231 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~--G~~~~~L~v~dl~tg~~~~~t~---~~~~~~~~~WSpDG~~l~y~~~~~~~~g~--~~ 231 (1012)
.+.+.+|||+++| |+++.. +......|-++-++|+...+.. .+.....++-+|||+.|+...-....... .+
T Consensus 39 Ps~l~~~~~~~~L-Y~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 39 PSWLAVSPDGRRL-YVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp ECCEEE-TTSSEE-EEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CceEEEEeCCCEE-EEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4578899999776 555554 3334455666666566543221 22223456778999877665432111000 01
Q ss_pred CCC----CceEEEEeec--c----ccc-eeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceee
Q psy1288 232 SKK----NRSSAYHLTV--N----VAP-ITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLD 300 (1012)
Q Consensus 232 ~~~----~~~l~~~~~~--~----~~~-i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~ 300 (1012)
.+. ...++.+... + ... .-...++|||+++|+. +.+.....+|.++-..++......+........-.
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 000 0011111100 0 011 1133589999988765 44444444444443332211111111111111111
Q ss_pred eeEEecCCEEEEEEEcCceEEEEEEecC--CCcee--eeec-CC---ce--EEEeecccccCcEEEEEecCCCCCcEEEE
Q psy1288 301 WATCVANDKLILSYIHHVKNVMHLHDLA--SGKHL--YTFP-LD---VG--TIVGFSGKKKYSEIFYSFMSFLQPTIIFH 370 (1012)
Q Consensus 301 ~~~~~~~~~l~~~~~~~g~~~l~~~dl~--~G~~~--~~l~-~~---~~--~v~~~~~spdg~~l~~~~ss~~~p~~l~~ 370 (1012)
.....+++.+|+..... +.|.++++. +|+.. +.+. .| .+ ....+..+|||+.|+++-.. ...|..
T Consensus 197 ~~f~pdg~~~Yv~~e~s--~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---~~sI~v 271 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELS--NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---SNSISV 271 (345)
T ss_dssp EEE-TTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT---TTEEEE
T ss_pred EEEcCCcCEEEEecCCC--CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc---CCEEEE
Confidence 22233545666654333 445555553 45321 1121 21 11 34567789999988776544 334555
Q ss_pred EeCCCCCCCCCCcceEEEEeccCCCCCCCCCceEEEEEECCCCceEE
Q psy1288 371 CNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIP 417 (1012)
Q Consensus 371 ~d~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~ 417 (1012)
+++.. ++| +.+.+...... .-.++.+.+ ++||..|.
T Consensus 272 f~~d~---~~g--~l~~~~~~~~~-----G~~Pr~~~~-s~~g~~l~ 307 (345)
T PF10282_consen 272 FDLDP---ATG--TLTLVQTVPTG-----GKFPRHFAF-SPDGRYLY 307 (345)
T ss_dssp EEECT---TTT--TEEEEEEEEES-----SSSEEEEEE--TTSSEEE
T ss_pred EEEec---CCC--ceEEEEEEeCC-----CCCccEEEE-eCCCCEEE
Confidence 55510 345 34444332111 112444444 67776553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2624|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0079 Score=68.16 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=96.0
Q ss_pred CCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc---ChhHHHHHHhCCeEEEEEcCCCCC
Q psy1288 398 PSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF---SVTKIVFLRDFNGIYAIPNIRGGG 474 (1012)
Q Consensus 398 ~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~~~~l~~~G~~v~~~d~RG~g 474 (1012)
..++..|...+.+.||--+.. --.|... +++|+|++.||-...+..+-- .....-.|+++||-|-.-|.|| .
T Consensus 43 ~~gy~~E~h~V~T~DgYiL~l-hRIp~~~---~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n 117 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGYILTL-HRIPRGK---KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-N 117 (403)
T ss_pred HcCCceEEEEEEccCCeEEEE-eeecCCC---CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-c
Confidence 346778999999999973332 2223331 789999999997554432221 1234456788999999999999 5
Q ss_pred CCchhHHhhhhc-C---C----CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC---ceeEEEEc
Q psy1288 475 EYGERWHDGGRL-L---N----KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD---LFGAAIVQ 543 (1012)
Q Consensus 475 ~~g~~~~~~~~~-~---~----~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~ 543 (1012)
.|++.-...... . | ..-...|+-+.++++.+.. ..+++..+|||.|+.....++...|+ .++..++.
T Consensus 118 ~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aL 195 (403)
T KOG2624|consen 118 TYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIAL 195 (403)
T ss_pred ccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheeeee
Confidence 565543322211 1 1 1112358889999988763 67899999999999988888877766 46677777
Q ss_pred cC
Q psy1288 544 VG 545 (1012)
Q Consensus 544 ~~ 545 (1012)
+|
T Consensus 196 AP 197 (403)
T KOG2624|consen 196 AP 197 (403)
T ss_pred cc
Confidence 66
|
|
| >KOG1516|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0027 Score=76.95 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=81.3
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChh-HHHHHHhCCeEEEEEcCCCCCCCchhHHhhhh-c
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVT-KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGR-L 486 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~-~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~-~ 486 (1012)
+.|...+ -++.|......+ .|++|++|||.-.... ..+... ....+..+..+|+.+++|-+- +| |...+. .
T Consensus 93 sEDCLyl--NV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~~ 166 (545)
T KOG1516|consen 93 SEDCLYL--NVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDSA 166 (545)
T ss_pred cCCCceE--EEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCCC
Confidence 4454433 455565532222 8999999998432222 112111 123344457999999999642 22 211111 1
Q ss_pred CCCcchHhHHHHHHHHHHHc---CCCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIAS---GYTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
..+.-.+.|...+++|+.++ --.||++|.++|+|+||..+..++... ..+|..+|..+|
T Consensus 167 ~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG 230 (545)
T KOG1516|consen 167 APGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSG 230 (545)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcc
Confidence 12344467999999999876 237999999999999999887665431 247888888887
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.13 Score=57.93 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=45.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-e---ecceeeeeeEEeeCCCeEEEEecC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-V---LHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t---~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
.+..+++||||+++|=+... | .++++|-.+|+.+-. . -..++...++||||++.|+-.+.+
T Consensus 192 FV~~VRysPDG~~Fat~gsD-g----ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSD-G----KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred ceeeEEECCCCCeEEEecCC-c----cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 46789999999998854432 2 799999999886531 1 122346789999999999887655
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0041 Score=65.46 Aligned_cols=77 Identities=18% Similarity=0.111 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEE
Q psy1288 463 GIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIV 542 (1012)
Q Consensus 463 ~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 542 (1012)
|.|+++|.||.|..... ...........|+.+.++.+++.-. -+++.++|+|+||.+++.++.++|++++++++
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALG--IKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHT--TSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhC--CCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 57999999998854321 0122334456788888888887532 34599999999999999999999999999988
Q ss_pred ccC
Q psy1288 543 QVG 545 (1012)
Q Consensus 543 ~~~ 545 (1012)
..+
T Consensus 75 ~~~ 77 (230)
T PF00561_consen 75 ISP 77 (230)
T ss_dssp ESE
T ss_pred Eee
Confidence 866
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.075 Score=64.83 Aligned_cols=95 Identities=17% Similarity=0.288 Sum_probs=63.7
Q ss_pred CEEEEEEEcCCCCeeEEEEEeCCCCceEEE-cCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCC-CceEEEEEEECCCC
Q psy1288 116 DHYFFFHNTGLQNHSVMYIQDSLDGEARVF-LDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSG-SDWTSMHFKDVATG 193 (1012)
Q Consensus 116 ~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L-~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G-~~~~~L~v~dl~tg 193 (1012)
.+++|+....+ .|...|.++...+++ +. ....+-.|.|||||++|||.++..+ .....||+.||++.
T Consensus 319 tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~-------~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 319 AKLAFRNDVTG----NLAYIDYTKGASRAVEIE-------DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred eeEEEEEcCCC----eEEEEecCCCCceEEEec-------CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 46888775432 788899888888877 55 3346778999999999999545444 12357999999765
Q ss_pred ce--eceeecceeeeeeEEe--eCCC-eEEEEecC
Q psy1288 194 KE--YPEVLHRLKFVSIAWT--HDHK-GVFYSNQE 223 (1012)
Q Consensus 194 ~~--~~~t~~~~~~~~~~WS--pDG~-~l~y~~~~ 223 (1012)
.. ..+..+.+ .-|+|- ..|. .|.|+++-
T Consensus 388 ~~~~vkl~ve~a--aiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 388 GSGLVKLPVENA--AIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred CCCceEeecccc--cccceEecCCCCeEEEEEcCC
Confidence 43 33444443 346664 5564 47888753
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0014 Score=66.17 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCchhh
Q psy1288 802 HNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ 874 (1012)
Q Consensus 802 ~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~ 874 (1012)
.+++ .|+.|+||++|.+|+-||..-|.-+|..+..- +=+|..|.+.||-++...++.
T Consensus 175 ~~~~-------~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~---------~KeL~~~e~SgHVIt~D~Erd 231 (243)
T COG1647 175 RSLD-------KIYSPTLVVQGRQDEMVPAESANFIYDHVESD---------DKELKWLEGSGHVITLDKERD 231 (243)
T ss_pred hhhh-------hcccchhheecccCCCCCHHHHHHHHHhccCC---------cceeEEEccCCceeecchhHH
Confidence 5677 89999999999999999999999999988876 558999999999998654443
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.2 Score=58.92 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=53.7
Q ss_pred hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHH----HHHHHHHHHcCCCCCCcEEEEecChHHHHHHH
Q psy1288 453 TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDF----QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAA 528 (1012)
Q Consensus 453 ~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~----~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 528 (1012)
++..++.++|+.|++++.|.-+...+. -.++|. ..|++.+.+. +...+|-++|+|+||.+++.
T Consensus 238 SlVr~lv~qG~~VflIsW~nP~~~~r~-----------~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISWRNPDKAHRE-----------WGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAA 304 (560)
T ss_pred hHHHHHHHcCCeEEEEeCCCCChhhcC-----------CCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHH
Confidence 456788889999999999875532111 123343 3444444433 45678999999999998886
Q ss_pred ----HHhhCCC-ceeEEEEccC
Q psy1288 529 ----CINQRPD-LFGAAIVQVG 545 (1012)
Q Consensus 529 ----~~~~~p~-~f~a~v~~~~ 545 (1012)
++..+++ .++.++....
T Consensus 305 ~~a~~aA~~~~~~V~sltllat 326 (560)
T TIGR01839 305 LVGHLQALGQLRKVNSLTYLVS 326 (560)
T ss_pred HHHHHHhcCCCCceeeEEeeec
Confidence 5566675 6777776655
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.54 Score=53.60 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=90.2
Q ss_pred EEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec
Q psy1288 118 YFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP 197 (1012)
Q Consensus 118 ~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~ 197 (1012)
++|+-..+ ...|...+....+..--+. . +........+||||+++ |+.+++| .|-++|+.+++...
T Consensus 7 l~~V~~~~---~~~v~viD~~t~~~~~~i~-----~-~~~~h~~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 7 LFYVVERG---SGSVAVIDGATNKVVARIP-----T-GGAPHAGLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVA 72 (369)
T ss_dssp EEEEEEGG---GTEEEEEETTT-SEEEEEE-------STTEEEEEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEE
T ss_pred EEEEEecC---CCEEEEEECCCCeEEEEEc-----C-CCCceeEEEecCCCCEE-EEEcCCC----eEEEEECCcccEEE
Confidence 45554433 2356777765443222222 1 11124567899999985 5556654 69999999999765
Q ss_pred eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc-------cceeeeeeecCCCEEEEEECCCCC
Q psy1288 198 EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV-------APITSQYITNEGPQFVFKTNKDAP 270 (1012)
Q Consensus 198 ~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~-------~~i~~~~~s~dg~~l~~~tn~~~~ 270 (1012)
....+....+++.|+||++++.....+......+.. ..+++.+.+... ..+..-..+|....+++...+
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--- 148 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--- 148 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT---
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEEEcc---
Confidence 433344457799999999886554322110001111 111222221110 011112245666665555432
Q ss_pred CceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee
Q psy1288 271 NYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334 (1012)
Q Consensus 271 ~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~ 334 (1012)
..+++.+|.........+ .+ +............+++++++... +..++.++|.++++...
T Consensus 149 ~~~I~vVdy~d~~~~~~~-~i-~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVT-TI-KVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp TTEEEEEETTTSSCEEEE-EE-E--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEE
T ss_pred CCeEEEEEecccccccee-ee-cccccccccccCcccceeeeccc--ccceeEEEeeccceEEE
Confidence 357888887654311111 11 11122222233334455555433 23477788886665543
|
... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.1 Score=53.20 Aligned_cols=202 Identities=12% Similarity=0.010 Sum_probs=98.9
Q ss_pred ceEeeeEEECC-CCcEEEEEEeCCCCceEEEEEEECCCCce-------e-ceeecceeeeeeEEeeCCCeEEEEe-cCCC
Q psy1288 156 TVSLGSYSFSE-DGKTLAYCLSSSGSDWTSMHFKDVATGKE-------Y-PEVLHRLKFVSIAWTHDHKGVFYSN-QEPK 225 (1012)
Q Consensus 156 ~~~i~~~~~SP-DGk~iAy~~~~~G~~~~~L~v~dl~tg~~-------~-~~t~~~~~~~~~~WSpDG~~l~y~~-~~~~ 225 (1012)
...+..+.||| |+++||-. +.+| .|.++|+.++.. . .+.........+.|+|++..++.+. .+..
T Consensus 75 ~~~V~~v~fsP~d~~~LaSg-S~Dg----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTA-SEDG----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEE-eCCC----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 34688999999 88877644 3333 788999876532 1 1111223357799999976555553 2211
Q ss_pred CCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe
Q psy1288 226 SKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV 305 (1012)
Q Consensus 226 ~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (1012)
..-. +.... +...........+....|+++|..|+..+. +..|...|+.++.. ...+..+............
T Consensus 150 VrIW-Dl~tg-~~~~~l~~h~~~V~sla~spdG~lLatgs~----Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 150 VNVW-DVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTTSK----DKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred EEEE-ECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEecC----CCEEEEEECCCCcE--EEEEecCCCCcceEEEEcC
Confidence 0000 00000 011000000123444458999887665542 34577778766541 2233323221111222222
Q ss_pred cCCEEEEEE-EcCceEEEEEEecCCCc-eeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 306 ANDKLILSY-IHHVKNVMHLHDLASGK-HLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 306 ~~~~l~~~~-~~~g~~~l~~~dl~~G~-~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++.++... .......+.+||+.+.. ....+... ...+....+++|++.++....+. ..|..+|+
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD---g~Iriwdl 289 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE---GNIRCFEL 289 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC---CeEEEEEe
Confidence 324443322 22234578899985433 22222222 12233345788888766654222 35777777
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.079 Score=54.69 Aligned_cols=210 Identities=10% Similarity=0.027 Sum_probs=111.1
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
-+|.+++-...+ ....+|-.+.. +.+.+.+- .++...+....|+|-..-+.++++.+ . .|.++|...
T Consensus 30 ~~g~~lasgs~d---ktv~v~n~e~~----r~~~~~~~--~gh~~svdql~w~~~~~d~~atas~d--k--~ir~wd~r~ 96 (313)
T KOG1407|consen 30 CDGTKLASGSFD---KTVSVWNLERD----RFRKELVY--RGHTDSVDQLCWDPKHPDLFATASGD--K--TIRIWDIRS 96 (313)
T ss_pred ccCceeeecccC---CceEEEEecch----hhhhhhcc--cCCCcchhhheeCCCCCcceEEecCC--c--eEEEEEecc
Confidence 566666544332 23455654432 22233211 11233667889999887776666532 2 799999999
Q ss_pred CceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec-----cccce----eeeeeecCCCEEEE
Q psy1288 193 GKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV-----NVAPI----TSQYITNEGPQFVF 263 (1012)
Q Consensus 193 g~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~-----~~~~i----~~~~~s~dg~~l~~ 263 (1012)
++....+..........|||||.++++...+.. +.+.... +.... .-..|. ..+.++|
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~------------it~id~r~~~~~~~~~~~~e~ne~~w~-~~nd~Ff 163 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGEYIAVGNKDDR------------ITFIDARTYKIVNEEQFKFEVNEISWN-NSNDLFF 163 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCCEEEEecCccc------------EEEEEecccceeehhcccceeeeeeec-CCCCEEE
Confidence 987665444444467899999999999865421 1111110 00000 011255 4556788
Q ss_pred EECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEE
Q psy1288 264 KTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTI 343 (1012)
Q Consensus 264 ~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v 343 (1012)
++|..+ ...|+..+. -+ ....+.++. ..-+-.-..++|+++.+...+ ..+-+||++.=-=.+.++--..-|
T Consensus 164 lt~GlG-~v~ILsyps--Lk--pv~si~AH~-snCicI~f~p~GryfA~GsAD---AlvSLWD~~ELiC~R~isRldwpV 234 (313)
T KOG1407|consen 164 LTNGLG-CVEILSYPS--LK--PVQSIKAHP-SNCICIEFDPDGRYFATGSAD---ALVSLWDVDELICERCISRLDWPV 234 (313)
T ss_pred EecCCc-eEEEEeccc--cc--cccccccCC-cceEEEEECCCCceEeecccc---ceeeccChhHhhhheeeccccCce
Confidence 887532 344555442 11 123333333 223333334455666554332 455677774211123344334556
Q ss_pred EeecccccCcEEEE
Q psy1288 344 VGFSGKKKYSEIFY 357 (1012)
Q Consensus 344 ~~~~~spdg~~l~~ 357 (1012)
..+++|.||+.|+-
T Consensus 235 RTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 235 RTLSFSHDGRMLAS 248 (313)
T ss_pred EEEEeccCcceeec
Confidence 77889999987663
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0057 Score=66.93 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=39.3
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+++.|+||+||++|.-||+..+.++.+.++. .+.+.++++.||.+..
T Consensus 207 ~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~----------~~~~~~~~~~gH~~~~ 253 (276)
T PHA02857 207 KIKTPILILQGTNNEISDVSGAYYFMQHANC----------NREIKIYEGAKHHLHK 253 (276)
T ss_pred cCCCCEEEEecCCCCcCChHHHHHHHHHccC----------CceEEEeCCCcccccC
Confidence 5669999999999999999999988776533 3478899999998764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.16 Score=54.63 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=82.9
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCccc--CCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKK--HSKK 234 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~--~~~~ 234 (1012)
..+.++++||||+.+|+.....+ ...|++....+.....+ .......|+|++||.-.++........... ....
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~--~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDG--GRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCC--CCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 45778999999999999983333 34899987654443322 334568899999975333332111000000 0000
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcc------cCcEEeeccCCCceeeeeEEecCC
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE------SNWKTLIEENKDDVLDWATCVAND 308 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~ 308 (1012)
...+-.........|....+||||.+++++...+.. .+|+..-+..... ....++.... ......+.|.++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~-~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGG-GRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDS 177 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCC-CeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCCC
Confidence 000000000000145555699999999999865432 4565554321110 0112222221 1222344555556
Q ss_pred EEEEEEEcCceEEEEEEec
Q psy1288 309 KLILSYIHHVKNVMHLHDL 327 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl 327 (1012)
.|++.....+......+..
T Consensus 178 ~L~V~~~~~~~~~~~~v~~ 196 (253)
T PF10647_consen 178 TLVVLGRSAGGPVVRLVSV 196 (253)
T ss_pred EEEEEeCCCCCceeEEEEc
Confidence 7766655544333224555
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0044 Score=67.97 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=38.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|+++|++|..||+..+++++..+. .+++++.++.||...
T Consensus 221 ~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~-----------~~~~~~i~~agH~~~ 265 (282)
T TIGR03343 221 EIKAKTLVTWGRDDRFVPLDHGLKLLWNMP-----------DAQLHVFSRCGHWAQ 265 (282)
T ss_pred hCCCCEEEEEccCCCcCCchhHHHHHHhCC-----------CCEEEEeCCCCcCCc
Confidence 677999999999999999998888877653 347788999999864
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.48 Score=53.32 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=36.2
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC-Cceec-----eee-cceeeeeeEEeeCCCeEEEEe
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT-GKEYP-----EVL-HRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t-g~~~~-----~t~-~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
.....++|||+++.. .+... . .|+++|+++ |...+ ... .+.....+.|+|||+.+|.+.
T Consensus 128 ~~~~~~~p~g~~l~v-~~~~~-~--~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 128 CHSANIDPDNRTLWV-PCLKE-D--RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred ccEeEeCCCCCEEEE-eeCCC-C--EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence 345679999988754 44332 2 789999876 33221 111 122235689999999776654
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.2 Score=58.19 Aligned_cols=67 Identities=4% Similarity=-0.041 Sum_probs=42.3
Q ss_pred eeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccc-cCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 301 WATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKK-KYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 301 ~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~sp-dg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
-+...+|+++.+.. ....+++|++++++....+......+....++| +.+++++..+. .++|.+|+.
T Consensus 481 l~~SsdG~yiaa~~---t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~ 548 (691)
T KOG2048|consen 481 LVVSSDGNYIAAIS---TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIE 548 (691)
T ss_pred EEEcCCCCEEEEEe---ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecC----CeEEEEecc
Confidence 34455667877765 457899999976665433323334455556664 44677776654 479999993
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.079 Score=58.76 Aligned_cols=190 Identities=6% Similarity=0.017 Sum_probs=103.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc----eeeeeeEEeeCCCeEEEEecCCCCCcccCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR----LKFVSIAWTHDHKGVFYSNQEPKSKSKKHS 232 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~----~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~ 232 (1012)
+.+....|+|+|+..+|+..+. --+|.+|+++++..++.... .....+.-|||++.|++....+
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------- 325 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRR----KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------- 325 (514)
T ss_pred CccceeeecCCCceEEEecccc----eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc--------
Confidence 4567889999999777776542 37999999999876543322 2346688899999888875432
Q ss_pred CCCceEEEEeeccc--------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeE-
Q psy1288 233 KKNRSSAYHLTVNV--------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWAT- 303 (1012)
Q Consensus 233 ~~~~~l~~~~~~~~--------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~- 303 (1012)
...+.|...+. ..+....|+.||+.|+.... .+.+|.+|+.... -..+.+.+. ...-..+.
T Consensus 326 ---~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~----~GeV~v~nl~~~~--~~~rf~D~G-~v~gts~~~ 395 (514)
T KOG2055|consen 326 ---HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG----TGEVYVWNLRQNS--CLHRFVDDG-SVHGTSLCI 395 (514)
T ss_pred ---eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC----CceEEEEecCCcc--eEEEEeecC-ccceeeeee
Confidence 11111211110 11223348899988887753 3579999997653 111222221 11111222
Q ss_pred EecCCEEEEEEEcCceEEEEEEecC----CCceeeeecCC--ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 304 CVANDKLILSYIHHVKNVMHLHDLA----SGKHLYTFPLD--VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~l~~~dl~----~G~~~~~l~~~--~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+ ..++..-.+.|. +-+|+.. ++.++...+.. ...|..+.|++|+.-+++..+... ..+-++.+
T Consensus 396 S~n-g~ylA~GS~~Gi--VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k--nalrLVHv 466 (514)
T KOG2055|consen 396 SLN-GSYLATGSDSGI--VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK--NALRLVHV 466 (514)
T ss_pred cCC-CceEEeccCcce--EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc--cceEEEec
Confidence 123 233333333333 4445532 12221111222 456778889999887766554433 33444444
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.96 Score=49.28 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=87.8
Q ss_pred EEEEEEeCCCCceEEEEEEECC--CCceec--eeecceeeeeeEEeeCCCeEEEEecCCCCCcc----cCCCCCceEEEE
Q psy1288 170 TLAYCLSSSGSDWTSMHFKDVA--TGKEYP--EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK----KHSKKNRSSAYH 241 (1012)
Q Consensus 170 ~iAy~~~~~G~~~~~L~v~dl~--tg~~~~--~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~----~~~~~~~~l~~~ 241 (1012)
+.+|..+..-++...|++++++ +|+... +.......+-++|+|+++.||-....+...+. .+.+ +-.+.+.
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~-~G~Lt~l 81 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPD-DGRLTFL 81 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCC-CCeEEEe
Confidence 4455554331112245555554 555432 22222334678999999887666543221111 1110 0111111
Q ss_pred e--eccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCC--c-------eeeeeEEecCCEE
Q psy1288 242 L--TVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKD--D-------VLDWATCVANDKL 310 (1012)
Q Consensus 242 ~--~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~--~-------~~~~~~~~~~~~l 310 (1012)
. .....+..|..++++|+ ++|.+|-......++.+..+ +.......++.+... . .-.....++++.|
T Consensus 82 n~~~~~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l 159 (346)
T COG2706 82 NRQTLPGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL 159 (346)
T ss_pred eccccCCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEE
Confidence 1 11112223555677765 55555554433344433322 322112222222111 0 0001112343444
Q ss_pred EEEEEcCceEEEEEEecCCCceeeeec---CCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 311 ILSYIHHVKNVMHLHDLASGKHLYTFP---LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 311 ~~~~~~~g~~~l~~~dl~~G~~~~~l~---~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++. +-|..++++|++++|+....-+ .+...-..+.|.|+++.+|+. +....--.+|.++.
T Consensus 160 ~v~--DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~ 222 (346)
T COG2706 160 VVP--DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNP 222 (346)
T ss_pred EEe--ecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcC
Confidence 443 3456789999998776422111 122223456788988755544 44444445667765
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.21 Score=58.99 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=102.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc--eece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK--EYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSK 233 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~--~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~ 233 (1012)
..+....+||||+.++.+.... .+.++++.+++ .... .-.......+.|||||+.|+=.+.+....-. +..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw-d~~ 233 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW-DLK 233 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe-ecc
Confidence 4566789999999988765432 56677776665 3222 2223346889999999965544443210000 000
Q ss_pred CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEE
Q psy1288 234 KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313 (1012)
Q Consensus 234 ~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 313 (1012)
.....+.....-...+....|+|+| .+++....+ ..+...|+.+++ ....+......+.......+++.++..
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D---~tvriWd~~~~~---~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDD---GTVRIWDVRTGE---CVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCC-CEEEEecCC---CcEEEEeccCCe---EEEeeeccCCceEEEEECCCCCEEEEc
Confidence 0001111110000223344588999 555555433 235556666544 233333332333322333343444443
Q ss_pred EEcCceEEEEEEecCCCce--eeeecCCce--EEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 314 YIHHVKNVMHLHDLASGKH--LYTFPLDVG--TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 314 ~~~~g~~~l~~~dl~~G~~--~~~l~~~~~--~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.. ...+.+||+.+|.. ...+..... .+....++|+++.++..... ..+-.+|+
T Consensus 307 -s~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d----~~~~~w~l 363 (456)
T KOG0266|consen 307 -SY--DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD----RTLKLWDL 363 (456)
T ss_pred -CC--CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC----CeEEEEEc
Confidence 32 45788899977762 233332221 46677889999887765432 24556666
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.018 Score=70.47 Aligned_cols=101 Identities=15% Similarity=0.026 Sum_probs=61.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh--HH-----hhh---h---------cCCCc
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER--WH-----DGG---R---------LLNKQ 490 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~--~~-----~~~---~---------~~~~~ 490 (1012)
...|+|+++||-.+... .|.. ....|.++||.|+.+|+||+|..... .. ... . +....
T Consensus 447 ~g~P~VVllHG~~g~~~--~~~~-lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~r 523 (792)
T TIGR03502 447 DGWPVVIYQHGITGAKE--NALA-FAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLR 523 (792)
T ss_pred CCCcEEEEeCCCCCCHH--HHHH-HHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHH
Confidence 34689999999654332 2332 34456657999999999998865221 00 000 0 01112
Q ss_pred chHhHHHHHHHHHH------Hc----CCCCCCcEEEEecChHHHHHHHHHhhC
Q psy1288 491 NVFDDFQCAAEYLI------AS----GYTQSSRLAIQGGSNGGLLTAACINQR 533 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~------~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~ 533 (1012)
....|+......+. .. ...+..++.++|||+||++....+...
T Consensus 524 Q~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 524 QSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 33456665555444 11 124567999999999999988877653
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0089 Score=62.72 Aligned_cols=104 Identities=12% Similarity=-0.011 Sum_probs=69.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhhhcccccCCCCCCCCCCCcccCCCC
Q psy1288 709 TIPVIYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDYGSP 786 (1012)
Q Consensus 709 ~~~~~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 786 (1012)
....++-+++.+... --+|..|+. |-|.| +|.++..+-++|+.|++.+. .. |..
T Consensus 249 l~~~idli~~vlas~-ynID~sRIYviGlSrG-------~~gt~al~~kfPdfFAaa~~--------ia--------G~~ 304 (387)
T COG4099 249 LIEKIDLILEVLAST-YNIDRSRIYVIGLSRG-------GFGTWALAEKFPDFFAAAVP--------IA--------GGG 304 (387)
T ss_pred HHHHHHHHHHHHhhc-cCcccceEEEEeecCc-------chhhHHHHHhCchhhheeee--------ec--------CCC
Confidence 334444454333321 224566665 77888 77787777888999987544 01 111
Q ss_pred CChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q psy1288 787 ANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIET 861 (1012)
Q Consensus 787 ~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 861 (1012)
+++.. .++ ..++|.-|.|+.+|.-+|.+.|.-.|..|+..+. +|.|..|.
T Consensus 305 d~v~l------v~~------------lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~-------kv~Ytaf~ 354 (387)
T COG4099 305 DRVYL------VRT------------LKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDR-------KVNYTAFL 354 (387)
T ss_pred chhhh------hhh------------hccCceEEEEecCCCccccCcceeehHHHHhhcc-------ccchhhhh
Confidence 22111 111 2238999999999999999999999999999977 88888874
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.76 Score=53.19 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=111.9
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-e-cceeeeee
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-L-HRLKFVSI 208 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~-~~~~~~~~ 208 (1012)
.+|+-+...+....|.+.+ ...+.++.|||+|+.||.....+ .+.++|.+..+..+.. . .....+..
T Consensus 198 ~vylW~~~s~~v~~l~~~~------~~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG------EELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred eEEEEecCCCceEEeEecC------CCceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCceeEEE
Confidence 3444444456666666643 24688999999999999876643 7889998776654422 2 34456889
Q ss_pred EEeeCCCeEEEEecCCCCCcccCCCCCceEEEEee------cc-c----cceeeeeeecCCCEEEEEECCCCCCceEEEE
Q psy1288 209 AWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT------VN-V----APITSQYITNEGPQFVFKTNKDAPNYRLITI 277 (1012)
Q Consensus 209 ~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~------~~-~----~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~ 277 (1012)
+|. +. ++-+..+. ..++.+.- .. . +.+--..|++|+..|+--.|+ ..++..
T Consensus 267 aW~--~~-~lssGsr~-----------~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD----N~~~Iw 328 (484)
T KOG0305|consen 267 AWN--SS-VLSSGSRD-----------GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND----NVVFIW 328 (484)
T ss_pred ecc--Cc-eEEEecCC-----------CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCc----cceEec
Confidence 996 22 22222111 01111110 00 0 111122489999887665543 456666
Q ss_pred eCCCCcccCcEEeeccCCCc-eeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEE
Q psy1288 278 DFDNFAESNWKTLIEENKDD-VLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIF 356 (1012)
Q Consensus 278 dl~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~ 356 (1012)
|....+ ....+..+...+ .+.|-.+. ..|+.....-....|..|+..+|+....+.. ...|..+.|++..++|+
T Consensus 329 d~~~~~--p~~~~~~H~aAVKA~awcP~q--~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 329 DGLSPE--PKFTFTEHTAAVKALAWCPWQ--SGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELL 403 (484)
T ss_pred cCCCcc--ccEEEeccceeeeEeeeCCCc--cCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEE
Confidence 653332 123343333221 12222221 3344433333356888999877765544432 34567889999999987
Q ss_pred EEecCCCCCcEEEEE
Q psy1288 357 YSFMSFLQPTIIFHC 371 (1012)
Q Consensus 357 ~~~ss~~~p~~l~~~ 371 (1012)
.+.--...--.||.|
T Consensus 404 sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 404 STHGYSENQITLWKY 418 (484)
T ss_pred EecCCCCCcEEEEec
Confidence 665333222234444
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.5 Score=46.19 Aligned_cols=253 Identities=15% Similarity=0.108 Sum_probs=121.4
Q ss_pred ccCCCCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCce
Q psy1288 103 WDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDW 182 (1012)
Q Consensus 103 ~~~~~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~ 182 (1012)
+..+.+-...++++++|-.-..+.++.-.-|..+..+|..+.| +--.+....+ ..+++++||+++. +++...+
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-n~~~~~g~~p---~yvsvd~~g~~vf-~AnY~~g-- 111 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL-NRQTLPGSPP---CYVSVDEDGRFVF-VANYHSG-- 111 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe-eccccCCCCC---eEEEECCCCCEEE-EEEccCc--
Confidence 3334444445777777766655545555667776655654432 2111111122 4578999998874 4443322
Q ss_pred EEEEEEECCC-Cceece---eec----------ceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---
Q psy1288 183 TSMHFKDVAT-GKEYPE---VLH----------RLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN--- 245 (1012)
Q Consensus 183 ~~L~v~dl~t-g~~~~~---t~~----------~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~--- 245 (1012)
.|.+..+.. |..... ... .........+|||+.|+..... .+...+|.-..+
T Consensus 112 -~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG----------~Dri~~y~~~dg~L~ 180 (346)
T COG2706 112 -SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG----------TDRIFLYDLDDGKLT 180 (346)
T ss_pred -eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC----------CceEEEEEcccCccc
Confidence 455555532 433211 000 0113456889999877665421 111112211100
Q ss_pred ---------ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEe--eccC--CCceeeeeEE-ecCCEEE
Q psy1288 246 ---------VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTL--IEEN--KDDVLDWATC-VANDKLI 311 (1012)
Q Consensus 246 ---------~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l--~~~~--~~~~~~~~~~-~~~~~l~ 311 (1012)
..+.+...|.|+|+..|+++..+. ...++..+...++.+..+.+ ++++ .......+.+ .+|+.||
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s-tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS-TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEEeccCC-EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 122234468899998888876542 34455555433331111111 1221 0111122232 4556666
Q ss_pred EEEEcCceEEEEEEecCCCceeeeec-CC-ceE-EEeecccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCC
Q psy1288 312 LSYIHHVKNVMHLHDLASGKHLYTFP-LD-VGT-IVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNS 381 (1012)
Q Consensus 312 ~~~~~~g~~~l~~~dl~~G~~~~~l~-~~-~~~-v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g 381 (1012)
++-+....-.++.++..+|+. ..+. .+ .+. -..|.+++.++-|+.. +...+.-.+|++|- ++|
T Consensus 260 asNRg~dsI~~f~V~~~~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa-~q~sd~i~vf~~d~-----~TG 325 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKL-ELVGITPTEGQFPRDFNINPSGRFLIAA-NQKSDNITVFERDK-----ETG 325 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEE-EEEEEeccCCcCCccceeCCCCCEEEEE-ccCCCcEEEEEEcC-----CCc
Confidence 654433222344444444542 2221 11 222 2456777777755544 44444567888887 477
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.32 Score=53.64 Aligned_cols=65 Identities=14% Similarity=-0.022 Sum_probs=38.9
Q ss_pred eEeeeEEECCCCcEEEEEEe-----CC-CCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEe
Q psy1288 157 VSLGSYSFSEDGKTLAYCLS-----SS-GSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~-----~~-G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
.+..+..+.|||+..+=+.. .. ....-.||.+|..++..+.....-....+++|||||+.+|++-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 35567888899866543333 11 1222378999875555443222122236789999999887764
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=61.28 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=25.9
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHH
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEK 844 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~ 844 (1012)
-|++|+||..|..|.+..++++.+..+..
T Consensus 170 ~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 170 YPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred CCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 48999999999999999999998887664
|
|
| >KOG4389|consensus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0057 Score=68.39 Aligned_cols=112 Identities=27% Similarity=0.265 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhC-CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC---C
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDF-NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG---Y 508 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~ 508 (1012)
-++|++|||.-.+.++..+.-....|+.. ..+|+.+|||-+. +|-.+........+.-..-|..-+++|+.++- -
T Consensus 136 tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFG 214 (601)
T KOG4389|consen 136 TVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFG 214 (601)
T ss_pred eEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhC
Confidence 38899999854444444432212234433 4899999999643 44332212222222233568888999998873 3
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCC--CceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRP--DLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p--~~f~a~v~~~~ 545 (1012)
.||++|.++|.|+|+..+.+-+...+ .+|+.+|+++|
T Consensus 215 Gnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSG 253 (601)
T KOG4389|consen 215 GNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSG 253 (601)
T ss_pred CCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcC
Confidence 79999999999999977665544321 27888888888
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.15 Score=56.04 Aligned_cols=119 Identities=14% Similarity=0.059 Sum_probs=67.6
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh-------hhhcCCC
Q psy1288 417 PMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD-------GGRLLNK 489 (1012)
Q Consensus 417 ~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~-------~~~~~~~ 489 (1012)
...++.|+.. ....+|+.|++.|.......-...-....++. .|+.-++....-.|..-..... ......+
T Consensus 78 ~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~-~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g 155 (348)
T PF09752_consen 78 RFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLK-EGIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMG 155 (348)
T ss_pred EEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHH-cCcceEEEecccccccChhHhhcccccchhHHHHHH
Confidence 3455667665 23457888888885322211111111234455 4987666654332211111000 0001112
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEE
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAA 540 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 540 (1012)
...+.+....+.|+.++++ .++++.|.|+||.++..+++..|.....+
T Consensus 156 ~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~v 203 (348)
T PF09752_consen 156 RATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALV 203 (348)
T ss_pred hHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEE
Confidence 2345666777889998866 48999999999999999988888754433
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.02 E-value=3.2 Score=45.76 Aligned_cols=242 Identities=14% Similarity=0.121 Sum_probs=116.4
Q ss_pred CeeeCCEEEEEEE-----cCCCCeeEEEEEeCCC--CceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceE
Q psy1288 111 PQRQGDHYFFFHN-----TGLQNHSVMYIQDSLD--GEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWT 183 (1012)
Q Consensus 111 p~~dG~~~yy~~~-----~~~~~~~~l~~~~~~~--g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~ 183 (1012)
.+|||+.+|.... .-|+-...|-..+..+ ...|+.+-+...+.-. ......++|.|||++.+.--. ...
T Consensus 43 ~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~-~~~~~~~ls~dgk~~~V~N~T---Pa~ 118 (342)
T PF06433_consen 43 LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV-PYKNMFALSADGKFLYVQNFT---PAT 118 (342)
T ss_dssp E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS---GGGEEE-TTSSEEEEEEES---SSE
T ss_pred ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec-ccccceEEccCCcEEEEEccC---CCC
Confidence 3588988774322 1122222333334332 3445555432111111 134577999999998654332 235
Q ss_pred EEEEEECCCCceece-eecceeeeeeEEe--------eCCCeEEEEecCCCCCcccCCCCCceEEEEee--ccccc-eee
Q psy1288 184 SMHFKDVATGKEYPE-VLHRLKFVSIAWT--------HDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT--VNVAP-ITS 251 (1012)
Q Consensus 184 ~L~v~dl~tg~~~~~-t~~~~~~~~~~WS--------pDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~--~~~~~-i~~ 251 (1012)
.+-|+|++.++...+ ..+++. .-+-|. .||+.+-+.=+. ++. ........ ..... +..
T Consensus 119 SVtVVDl~~~kvv~ei~~PGC~-~iyP~~~~~F~~lC~DGsl~~v~Ld~-------~Gk--~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPGCW-LIYPSGNRGFSMLCGDGSLLTVTLDA-------DGK--EAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTSEE-EEEEEETTEEEEEETTSCEEEEEETS-------TSS--EEEEEEEESSTTTS-B-S-
T ss_pred eEEEEECCCCceeeeecCCCEE-EEEecCCCceEEEecCCceEEEEECC-------CCC--EeEeeccccCCCCcccccc
Confidence 899999999987653 233442 112222 344332222111 111 11000000 00011 122
Q ss_pred eeeecCCCEEEEEECCCCCCceEEEEeCCCCcc---cCcEEeeccC---CCce--eeeeEE-ecCCEEEEEEEcC-----
Q psy1288 252 QYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE---SNWKTLIEEN---KDDV--LDWATC-VANDKLILSYIHH----- 317 (1012)
Q Consensus 252 ~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~---~~~~~l~~~~---~~~~--~~~~~~-~~~~~l~~~~~~~----- 317 (1012)
+.++..+++++|.+- .+.++.+++...+. ..|..+.... .+.. .+.+.. ...++||+....+
T Consensus 189 ~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -EEETTTTEEEEEBT----TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred cceECCCCeEEEEec----CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 335567788999873 56788888866431 1222121111 1111 111222 2335777754432
Q ss_pred --ceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 318 --VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 318 --g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+-.+||++|+++++...+++++. .+.+++.+.|.+=++|..+. .-..|+.+|.
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~ 319 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSA--GDGTLDVYDA 319 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEET--TTTEEEEEET
T ss_pred cCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcC--CCCeEEEEeC
Confidence 34689999999888877777652 23345667777666666544 2357999998
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0056 Score=64.41 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=40.1
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+|+|++||.+|+.||...+++.++.|++.|. .+++..|++.||++..
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~-------~v~~~~~~g~gH~i~~ 202 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGA-------NVEFHEYPGGGHEISP 202 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT--------GEEEEEETT-SSS--H
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCC-------CEEEEEcCCCCCCCCH
Confidence 39999999999999999999999999999988 9999999999999864
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.027 Score=48.55 Aligned_cols=58 Identities=17% Similarity=0.039 Sum_probs=42.6
Q ss_pred CceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCc
Q psy1288 413 GTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 413 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g 477 (1012)
|.+|.+..+.|+. .++.+|+++||-...+. .|.. ..+.|+++||.|+..|.||.|...
T Consensus 1 G~~L~~~~w~p~~----~~k~~v~i~HG~~eh~~--ry~~-~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN----PPKAVVVIVHGFGEHSG--RYAH-LAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CcEEEEEEecCCC----CCCEEEEEeCCcHHHHH--HHHH-HHHHHHhCCCEEEEECCCcCCCCC
Confidence 5678888887765 25789999999644332 2333 456777889999999999998653
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0011 Score=73.51 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=41.8
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
++.|.=+=.++.+. +|+.|+|+..|-.|+-||+.--...|.+|+. +-++++||..||+....
T Consensus 246 ~~~L~Y~D~~nfA~-------ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~----------~K~l~vyp~~~He~~~~ 307 (320)
T PF05448_consen 246 FETLSYFDAVNFAR-------RIKCPVLFSVGLQDPVCPPSTQFAAYNAIPG----------PKELVVYPEYGHEYGPE 307 (320)
T ss_dssp HHHHHTT-HHHHGG-------G--SEEEEEEETT-SSS-HHHHHHHHCC--S----------SEEEEEETT--SSTTHH
T ss_pred HHHHhhhhHHHHHH-------HcCCCEEEEEecCCCCCCchhHHHHHhccCC----------CeeEEeccCcCCCchhh
Confidence 33344344446777 8999999999999999999988888888754 67999999999987643
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=56.80 Aligned_cols=196 Identities=18% Similarity=0.167 Sum_probs=108.1
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-------cceeeeeeEEeeCCCeEEEEecCCCCC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-------HRLKFVSIAWTHDHKGVFYSNQEPKSK 227 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-------~~~~~~~~~WSpDG~~l~y~~~~~~~~ 227 (1012)
+...+....|.|+.+....+.+.+| +|++||+..-+.....+ ........+|+|||+.|+-...++...
T Consensus 267 Hia~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred ceeeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 3457788999999999999888777 67888876543211111 122347789999999877655443210
Q ss_pred cccCCCCCce-EEEEee--ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcc--cCcEEeeccCCCceeeee
Q psy1288 228 SKKHSKKNRS-SAYHLT--VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE--SNWKTLIEENKDDVLDWA 302 (1012)
Q Consensus 228 g~~~~~~~~~-l~~~~~--~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~--~~~~~l~~~~~~~~~~~~ 302 (1012)
-...++.... .++... ....++....||+||+.|+-....+ .|-..|+..... ..|.-|...-+ ...-.
T Consensus 343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~----tLKvWDLrq~kkpL~~~tgL~t~~~--~tdc~ 416 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD----TLKVWDLRQFKKPLNVRTGLPTPFP--GTDCC 416 (641)
T ss_pred eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC----ceeeeeccccccchhhhcCCCccCC--CCccc
Confidence 0000000000 111111 1124566667999999876655432 355566665431 11222211111 11112
Q ss_pred EEecCCEEEEEEE--cCc--eEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecC
Q psy1288 303 TCVANDKLILSYI--HHV--KNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 303 ~~~~~~~l~~~~~--~~g--~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss 361 (1012)
..++ +.|++.-. .++ ...|+.++..+=+.+..|..+..++....|.|.=++|++....
T Consensus 417 FSPd-~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 417 FSPD-DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred cCCC-ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCC
Confidence 2334 55555432 222 3468888875545556666666677778899888887766544
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.29 Score=60.01 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=18.1
Q ss_pred ceEeeeEEECCCCcEEEEEEeC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSS 177 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~ 177 (1012)
...+.-++|||||+++|.+.+.
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCceeEEEECCCCCeEeeccCc
Confidence 4567889999999999986653
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.2 Score=55.77 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEec
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
.+..+.+||||+.||+.-.. ..|+++...|++..-.-.-.+..+++.||-||+.|+.+..
T Consensus 305 ~~e~FeVShd~~fia~~G~~-----G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNN-----GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred hhheeEecCCCCeEEEcccC-----ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcC
Confidence 56789999999999875432 3899999999986532222334688999999988877653
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.028 Score=64.86 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=34.6
Q ss_pred ceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 817 ATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 817 p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
.+.|-+|..|... .....+|++.|+++|+ ++.|..+++ ||-.
T Consensus 351 r~~i~~G~~E~~~-~~~~~~l~~~L~~~G~-------~~~~~~~~G-GHd~ 392 (411)
T PRK10439 351 RIVLEAGRREPMI-MRANQALYAQLHPAGH-------SVFWRQVDG-GHDA 392 (411)
T ss_pred eEEEeCCCCCchH-HHHHHHHHHHHHHCCC-------cEEEEECCC-CcCH
Confidence 4778899888543 4578899999999998 999999987 7954
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.28 Score=52.03 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=89.8
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcc--cCCCCC
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK--KHSKKN 235 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~--~~~~~~ 235 (1012)
....+||+-|.++|.+...+ .|.++|..|-..-+ ++..-....+++||+||+.|+-.+.+-...-. ..+.-.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG-----~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANG-----RVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCC-----cEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 34689999999999987643 67888887755322 22211235889999999988766543211000 011111
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeee-----EEecCCEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWA-----TCVANDKL 310 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~l 310 (1012)
.++.|. .++-...|.|..+...+.+--+.. -+.+++..+. ..+++.+++.-+... ....|+++
T Consensus 101 ~rirf~-----spv~~~q~hp~k~n~~va~~~~~s---p~vi~~s~~~----h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 101 KRIRFD-----SPVWGAQWHPRKRNKCVATIMEES---PVVIDFSDPK----HSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred eEEEcc-----CccceeeeccccCCeEEEEEecCC---cEEEEecCCc----eeeccCCCccccccccccccccCCCCEE
Confidence 111111 112122356655555554432211 2334444333 344444433222211 12233455
Q ss_pred EEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecC
Q psy1288 311 ILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 311 ~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+.. .+...|.+++..+-+-...+... ...+..+-++..|+.+++..+.
T Consensus 169 itG---tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 169 ITG---TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred EEe---cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 443 34566777776543321111111 2345556667778777766543
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.2 Score=51.62 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCc-hhHHhhhhcCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYG-ERWHDGGRLLN 488 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g-~~~~~~~~~~~ 488 (1012)
-.+|++|..|-..|+.-. ..+++.|+..-| ++..+. .|. ....+|..+|+.|+.+|.-.+-|.. +.-.+ ..
T Consensus 9 ~~~~~~I~vwet~P~~~~-~~~~~tiliA~G-f~rrmd-h~a-gLA~YL~~NGFhViRyDsl~HvGlSsG~I~e----ft 80 (294)
T PF02273_consen 9 LEDGRQIRVWETRPKNNE-PKRNNTILIAPG-FARRMD-HFA-GLAEYLSANGFHVIRYDSLNHVGLSSGDINE----FT 80 (294)
T ss_dssp ETTTEEEEEEEE---TTS----S-EEEEE-T-T-GGGG-GGH-HHHHHHHTTT--EEEE---B-----------------
T ss_pred cCCCCEEEEeccCCCCCC-cccCCeEEEecc-hhHHHH-HHH-HHHHHHhhCCeEEEeccccccccCCCCChhh----cc
Confidence 358999999999998643 455678887665 333331 232 3456677789999998865332211 10000 00
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
-.....|+..+++||...+ ..+++++..|..|-++...++. ++ ..-.|..+|
T Consensus 81 ms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVG 132 (294)
T PF02273_consen 81 MSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-IN-LSFLITAVG 132 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES-
T ss_pred hHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-cC-cceEEEEee
Confidence 0012358888999999775 4679999999999999888875 44 455666667
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.35 Score=51.14 Aligned_cols=57 Identities=12% Similarity=0.196 Sum_probs=37.0
Q ss_pred EEEEEEEcCceEEEEEEecCCCceeeeecCC---ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 309 KLILSYIHHVKNVMHLHDLASGKHLYTFPLD---VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~---~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++++..+. +.++++++ .|+..+.++.. .|.......||.|..++..... ..+|-+..
T Consensus 407 h~iVCNrs---ntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED----~vlYCF~~ 466 (508)
T KOG0275|consen 407 HFIVCNRS---NTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED----GVLYCFSV 466 (508)
T ss_pred eEEEEcCC---CeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccC----cEEEEEEe
Confidence 55555433 45788888 56666666544 3455556678999988877644 35787776
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.021 Score=59.81 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=27.6
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
.++.| .|.++|.+|+.++...+.++...... . ..++. -.+||.+-.
T Consensus 159 ~i~iP-tlHv~G~~D~~~~~~~s~~L~~~~~~--------~--~~v~~-h~gGH~vP~ 204 (212)
T PF03959_consen 159 KISIP-TLHVIGENDPVVPPERSEALAEMFDP--------D--ARVIE-HDGGHHVPR 204 (212)
T ss_dssp T---E-EEEEEETT-SSS-HHHHHHHHHHHHH--------H--EEEEE-ESSSSS---
T ss_pred cCCCC-eEEEEeCCCCCcchHHHHHHHHhccC--------C--cEEEE-ECCCCcCcC
Confidence 46778 99999999999998888777766654 1 23333 467887644
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.033 Score=59.01 Aligned_cols=45 Identities=20% Similarity=0.108 Sum_probs=35.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+||++|++|..||.....++...+. ...++++++.||.+.
T Consensus 191 ~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~ 235 (251)
T TIGR02427 191 AIAVPTLCIAGDQDGSTPPELVREIADLVP-----------GARFAEIRGAGHIPC 235 (251)
T ss_pred hcCCCeEEEEeccCCcCChHHHHHHHHhCC-----------CceEEEECCCCCccc
Confidence 677999999999999999987776655442 236788999999754
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.029 Score=61.11 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||++|++|..||..++.++.+.+. -++++++++.||.+.
T Consensus 218 ~i~~P~lii~g~~D~~vp~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~ 262 (278)
T TIGR03056 218 RITIPLHLIAGEEDKAVPPDESKRAATRVP-----------TATLHVVPGGGHLVH 262 (278)
T ss_pred cCCCCEEEEEeCCCcccCHHHHHHHHHhcc-----------CCeEEEECCCCCccc
Confidence 677999999999999999988777654432 246788999999864
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.14 Score=56.18 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=55.5
Q ss_pred HHcCCcccCCCCCCcccCCC-CCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc
Q psy1288 626 LLGYSPLHNIQGPDELKGKQ-YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704 (1012)
Q Consensus 626 ~~~~sP~~~~~~p~~~~~~~-~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~ 704 (1012)
+...++...+. ... .| +|++||..|..|+..++..++...... +..+...++++|........
T Consensus 218 ~~~~d~~~~~~------~i~~~P-~l~~~G~~D~~vp~~~~~~~~~~~~~~---------~~~~~~~~~~~H~~~~~~~~ 281 (299)
T COG1073 218 LLLLDPFDDAE------KISPRP-VLLVHGERDEVVPLRDAEDLYEAARER---------PKKLLFVPGGGHIDLYDNPP 281 (299)
T ss_pred hccCcchhhHh------hcCCcc-eEEEecCCCcccchhhhHHHHhhhccC---------CceEEEecCCccccccCccH
Confidence 45555555554 233 56 999999999999999998887776542 56778888999987652222
Q ss_pred -chhhhhHHHHHHHHhC
Q psy1288 705 -QFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 705 -~~~~~~~~~~fl~~~l 720 (1012)
..+.+.++..|+.+.+
T Consensus 282 ~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 282 AVEQALDKLAEFLERHL 298 (299)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 1255667778888764
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.4 Score=45.88 Aligned_cols=178 Identities=13% Similarity=0.193 Sum_probs=89.5
Q ss_pred eeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEE
Q psy1288 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSA 239 (1012)
Q Consensus 160 ~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~ 239 (1012)
-...|||||++++++-.. -.|-.+|..+-+...............|..++. +||....- |. -..+-
T Consensus 110 i~i~wsp~g~~~~~~~kd-----D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~Gl---G~-----v~ILs 175 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKD-----DRITFIDARTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGL---GC-----VEILS 175 (313)
T ss_pred eEEEEcCCCCEEEEecCc-----ccEEEEEecccceeehhcccceeeeeeecCCCC-EEEEecCC---ce-----EEEEe
Confidence 357899999999986543 267778877665543222222336689987665 55655321 11 00111
Q ss_pred EEeec-----cc--cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEE
Q psy1288 240 YHLTV-----NV--APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312 (1012)
Q Consensus 240 ~~~~~-----~~--~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 312 (1012)
|.... +. ...-...++|+|++|++-+.+ ..+-..|++.-- ..+.++.-+.. ++.+....++.++.
T Consensus 176 ypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD----AlvSLWD~~ELi---C~R~isRldwp-VRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 176 YPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD----ALVSLWDVDELI---CERCISRLDWP-VRTLSFSHDGRMLA 247 (313)
T ss_pred ccccccccccccCCcceEEEEECCCCceEeecccc----ceeeccChhHhh---hheeeccccCc-eEEEEeccCcceee
Confidence 11000 00 011122489999999886632 112223332111 12233333222 22222222244444
Q ss_pred EEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCC
Q psy1288 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 313 ~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~ 362 (1012)
+..++ .-|-+-..++|....+++.. +....++|.|...-|+|..+..
T Consensus 248 SaSED--h~IDIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 248 SASED--HFIDIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ccCcc--ceEEeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecCC
Confidence 44443 22334455678766666543 2223568999888888887654
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.05 Score=57.67 Aligned_cols=105 Identities=17% Similarity=0.123 Sum_probs=60.2
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCc-ccCCC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKS-KKHSK 233 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g-~~~~~ 233 (1012)
|...++..+|||||+.|+-+.... ..|-|+.+.+.+..-+.......-++++.|||+.-+..+.++=..- ....-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~----lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFD----LRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred CCCcceeeeECCCcceEeeeecce----eEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 456788999999999999877653 3566666665554323333333467899999998777665420000 00000
Q ss_pred CCceEEEE---eeccccceeeeeeecCCCEEEEEEC
Q psy1288 234 KNRSSAYH---LTVNVAPITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 234 ~~~~l~~~---~~~~~~~i~~~~~s~dg~~l~~~tn 266 (1012)
....++-+ .+.+.++++ |+|||..|++.-|
T Consensus 166 ~~W~ll~~f~~dT~Dltgie---WsPdg~~laVwd~ 198 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIE---WSPDGNWLAVWDN 198 (447)
T ss_pred HHHHHHHhcCCCcccccCce---ECCCCcEEEEecc
Confidence 00000000 011224555 9999999988865
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=58.20 Aligned_cols=53 Identities=25% Similarity=0.166 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHHHcCCCCC--CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 493 FDDFQCAAEYLIASGYTQS--SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 493 ~~D~~a~~~~l~~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.-|.+.|+.++...-.... -++...|+|+||+++..++.-.|..+.+++.-++
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~ 217 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSS 217 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCc
Confidence 3588888888888733222 3788889999999999998888999999998776
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.73 Score=47.52 Aligned_cols=187 Identities=11% Similarity=0.121 Sum_probs=105.3
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecc--eeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHR--LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~--~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
.+....++||++.||-.. +..|+++|+.++...+ .+++. .+...+.|--||++.|-.+.++.
T Consensus 42 qVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt--------- 106 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT--------- 106 (311)
T ss_pred ceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce---------
Confidence 567889999999998643 3489999999998755 23332 34678899999998865554421
Q ss_pred CceEEEEeeccc-------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecC
Q psy1288 235 NRSSAYHLTVNV-------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVAN 307 (1012)
Q Consensus 235 ~~~l~~~~~~~~-------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (1012)
.+++-.+.... ..+......|....|+...+ ...+...|+.... --.+|+|+. +..++......+
T Consensus 107 -~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq----sg~irvWDl~~~~--c~~~liPe~-~~~i~sl~v~~d 178 (311)
T KOG0315|consen 107 -VKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ----SGNIRVWDLGENS--CTHELIPED-DTSIQSLTVMPD 178 (311)
T ss_pred -EEEEeccCcccchhccCCCCcceEEecCCcceEEeecC----CCcEEEEEccCCc--cccccCCCC-CcceeeEEEcCC
Confidence 12221111000 22222234555555544432 3457777775532 125677776 455666555433
Q ss_pred CEEEEEEEcCceEEEEEEecCCCceeee------ecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 308 DKLILSYIHHVKNVMHLHDLASGKHLYT------FPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 308 ~~l~~~~~~~g~~~l~~~dl~~G~~~~~------l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+..++..+. ....|+|++-++..... +....+.+..-.+|||++.|+-.. +. .+++.++.
T Consensus 179 gsml~a~nn--kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sd---ktv~iwn~ 244 (311)
T KOG0315|consen 179 GSMLAAANN--KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SD---KTVKIWNT 244 (311)
T ss_pred CcEEEEecC--CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CC---ceEEEEec
Confidence 444443333 45688888854332211 222245555667899998766433 22 24555555
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.45 Score=52.47 Aligned_cols=206 Identities=12% Similarity=0.056 Sum_probs=104.2
Q ss_pred eeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCC--CcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceee
Q psy1288 129 HSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSED--GKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKF 205 (1012)
Q Consensus 129 ~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPD--Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~ 205 (1012)
...+|-++. .+..+.+. ++...+++..|+|. +..|| +.+.+| .+.++++++..+++ ++......
T Consensus 198 ~~kvW~~~~--~~~~~~l~------gH~~~v~~~~fhP~~~~~~la-t~s~Dg----tvklw~~~~e~~l~~l~gH~~RV 264 (459)
T KOG0272|consen 198 LVKVWSVPQ--CNLLQTLR------GHTSRVGAAVFHPVDSDLNLA-TASADG----TVKLWKLSQETPLQDLEGHLARV 264 (459)
T ss_pred ceeEeecCC--cceeEEEe------ccccceeeEEEccCCCcccee-eeccCC----ceeeeccCCCcchhhhhcchhhh
Confidence 467776554 24444444 24568999999998 44454 444444 56777877766554 33344557
Q ss_pred eeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCccc
Q psy1288 206 VSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAES 285 (1012)
Q Consensus 206 ~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~ 285 (1012)
+.++|.|+|+.|.-.+.+...+-. +......+++.+- -..++-..+|.+||.-+ .....+. -.+| .|+.++.
T Consensus 265 s~VafHPsG~~L~TasfD~tWRlW-D~~tk~ElL~QEG-Hs~~v~~iaf~~DGSL~-~tGGlD~-~~Rv--WDlRtgr-- 336 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTASFDSTWRLW-DLETKSELLLQEG-HSKGVFSIAFQPDGSLA-ATGGLDS-LGRV--WDLRTGR-- 336 (459)
T ss_pred eeeeecCCCceeeecccccchhhc-ccccchhhHhhcc-cccccceeEecCCCcee-eccCccc-hhhe--eecccCc--
Confidence 889999999988777655432111 0000011111110 00233334577887633 3322221 1222 4555554
Q ss_pred CcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEe
Q psy1288 286 NWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSF 359 (1012)
Q Consensus 286 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ 359 (1012)
-.-.+...-..++.....++ ++.+.....| ....+||+..-.....++....-|+.+-++|+...+.+++
T Consensus 337 -~im~L~gH~k~I~~V~fsPN-Gy~lATgs~D--nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 337 -CIMFLAGHIKEILSVAFSPN-GYHLATGSSD--NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred -EEEEecccccceeeEeECCC-ceEEeecCCC--CcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 11222222233333333333 5544443333 4566778843333344444344466777888666655554
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.14 Score=53.22 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=40.8
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
...+| +.++.|.+|..|...+...|.... ++...+.+++ |||.|-... ...+++++.+.+
T Consensus 174 pl~~p-i~~~~G~~D~~vs~~~~~~W~~~t----------~~~f~l~~fd-GgHFfl~~~------~~~v~~~i~~~l 233 (244)
T COG3208 174 PLACP-IHAFGGEKDHEVSRDELGAWREHT----------KGDFTLRVFD-GGHFFLNQQ------REEVLARLEQHL 233 (244)
T ss_pred CcCcc-eEEeccCcchhccHHHHHHHHHhh----------cCCceEEEec-Ccceehhhh------HHHHHHHHHHHh
Confidence 47889 999999999998766665555443 4467888876 679886532 233445555554
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.058 Score=63.33 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCCCCCCCc--ChhHHHHHHhCCeEEEEEcCCCCCCCch---hHHhhhhcCCCcchHhHHHHHHHHHHHc
Q psy1288 432 NPCILYGYGGFAVSLQPGF--SVTKIVFLRDFNGIYAIPNIRGGGEYGE---RWHDGGRLLNKQNVFDDFQCAAEYLIAS 506 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~--~~~~~~~l~~~G~~v~~~d~RG~g~~g~---~~~~~~~~~~~~~~~~D~~a~~~~l~~~ 506 (1012)
.|++|++ ||.+... ..+ ......+..+.|..+++..+|--|..-. .-.+.-+...-...+.|+...++++..+
T Consensus 29 gpifl~~-ggE~~~~-~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~ 106 (434)
T PF05577_consen 29 GPIFLYI-GGEGPIE-PFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKK 106 (434)
T ss_dssp SEEEEEE---SS-HH-HHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEE-CCCCccc-hhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHh
Confidence 7888887 4433221 111 1223455556699999999996543211 1111111122235577888888888755
Q ss_pred C-CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 507 G-YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 507 ~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
- ..+..++.++|+|+||.|++++-.++|+++.++++.++
T Consensus 107 ~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSa 146 (434)
T PF05577_consen 107 YNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSA 146 (434)
T ss_dssp TTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET-
T ss_pred hcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccc
Confidence 3 34556899999999999999999999999999998876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.3 Score=49.92 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=61.4
Q ss_pred hHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC
Q psy1288 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 699 (1012)
Q Consensus 620 ~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~ 699 (1012)
++..+.+...+|+.+.+ +.+.| -|+|.|.+|....+..+.-++.+|. ++..++..|+.+|+..
T Consensus 243 p~f~~L~~ivDP~~Y~~------rL~~P-K~ii~atgDeFf~pD~~~~y~d~L~----------G~K~lr~vPN~~H~~~ 305 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRD------RLTMP-KYIINATGDEFFVPDSSNFYYDKLP----------GEKYLRYVPNAGHSLI 305 (367)
T ss_pred HHHHHHHHhcCHHHHHH------hcCcc-EEEEecCCCceeccCchHHHHhhCC----------CCeeEEeCCCCCcccc
Confidence 44455667789998876 67888 8999999999999988888888775 3557888899999986
Q ss_pred CccccchhhhhHHHHHHHHhCCC
Q psy1288 700 KPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 700 ~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
. .+....+..|+...+..
T Consensus 306 ~-----~~~~~~l~~f~~~~~~~ 323 (367)
T PF10142_consen 306 G-----SDVVQSLRAFYNRIQNG 323 (367)
T ss_pred h-----HHHHHHHHHHHHHHHcC
Confidence 6 23445566888876543
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.3 Score=47.25 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=86.5
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
...+.....||-+.... +.+ ..-+|++||+...+-.-...... -.-+++.|.| |+|....+. +.
T Consensus 100 ~~~V~sL~~sP~~d~Fl-S~S----~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~G--LifA~~~~~--------~~ 163 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDTFL-SSS----LDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEG--LIFALANGS--------EL 163 (311)
T ss_pred CceEEEEEecCCCCeEE-ecc----cCCeEEeeEecCCCCceEEecCC-CcceeECCCC--cEEEEecCC--------Ce
Confidence 34677888888774432 222 22389999998655322111111 1346787877 444432211 01
Q ss_pred ceEEEEeeccc----------------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCcee
Q psy1288 236 RSSAYHLTVNV----------------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVL 299 (1012)
Q Consensus 236 ~~l~~~~~~~~----------------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~ 299 (1012)
-+++-.+..+. ..+ -+||||+.|++.++. ..++.+|.=.+....-...-+......+
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l---~FS~dGK~iLlsT~~----s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDL---EFSPDGKSILLSTNA----SFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeee---EEcCCCCEEEEEeCC----CcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 12221111100 223 389999999999964 3466666544431100111111112223
Q ss_pred eeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccC
Q psy1288 300 DWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKY 352 (1012)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg 352 (1012)
+....++ ...+++...+ .+|.+|++++|.....+..+ .+.+.-+.|+|..
T Consensus 237 ~a~ftPd-s~Fvl~gs~d--g~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 237 SATFTPD-SKFVLSGSDD--GTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred eEEECCC-CcEEEEecCC--CcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 4444456 4444444444 46778888888876666554 3434444566643
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.6 Score=57.37 Aligned_cols=101 Identities=11% Similarity=0.019 Sum_probs=62.4
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCC--------C------ceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEe
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLD--------G------EARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLS 176 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~--------g------~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~ 176 (1012)
+++||.++|.-.++ ..-.||.+...+ | .|+.+.- | .++...+.++.||||+.++|=..-
T Consensus 77 ~S~dG~~lAsGSDD---~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~---l-~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 77 FSPDGSYLASGSDD---RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSI---L-RGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred ECCCCCeEeeccCc---ceEEEeeecccCCcccccccccccccceeeEEEE---E-ecCCCccceeccCCCccEEEEecc
Confidence 34999998875433 345678776210 1 1111100 0 113346789999999998874432
Q ss_pred CCCCceEEEEEEECCCCceeceeecc-eeeeeeEEeeCCCeEEEEecC
Q psy1288 177 SSGSDWTSMHFKDVATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 177 ~~G~~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
...|.++|..+.+.......+ ...-+++|-|=|++|+-.+++
T Consensus 150 -----DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 150 -----DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred -----cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC
Confidence 247889999888654322222 235679999999988877655
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.17 Score=57.99 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=57.5
Q ss_pred CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeee
Q psy1288 128 NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFV 206 (1012)
Q Consensus 128 ~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~ 206 (1012)
++-.||+....+. +|....|...-..+...+.+.+|.|=-.-++-+++ ...+|.+||+.+++..- +.-....+.
T Consensus 650 g~i~lWr~~a~gl-~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as----yd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 650 GQINLWRLTANGL-PENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS----YDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ceEEEEEeccCCC-CcccCCcceeeecccceEEEEEecchhhhHhhhhh----ccceeeeeehhhhhhhheeccCcCcee
Confidence 4567888876543 23333333322224456778888885444433333 24589999999887542 222223457
Q ss_pred eeEEeeCCCeEEEEecCC
Q psy1288 207 SIAWTHDHKGVFYSNQEP 224 (1012)
Q Consensus 207 ~~~WSpDG~~l~y~~~~~ 224 (1012)
+++|||||+.++-+..++
T Consensus 725 ~~AWSpdGr~~AtVcKDg 742 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDG 742 (1012)
T ss_pred EEEECCCCcceeeeecCc
Confidence 899999999999887653
|
|
| >KOG1838|consensus | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.23 Score=55.91 Aligned_cols=187 Identities=15% Similarity=0.117 Sum_probs=100.8
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc-----hhhhhHHHHHHHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ-----FPLTIPVIYFYLT 718 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~-----~~~~~~~~~fl~~ 718 (1012)
...|.++++||..-..-. .....+...++. .++-.++.|.+|=+|..-..... -+|+..+++++.+
T Consensus 123 ~~~P~vvilpGltg~S~~-~YVr~lv~~a~~--------~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~ 193 (409)
T KOG1838|consen 123 GTDPIVVILPGLTGGSHE-SYVRHLVHEAQR--------KGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKK 193 (409)
T ss_pred CCCcEEEEecCCCCCChh-HHHHHHHHHHHh--------CCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHH
Confidence 456889999997322110 122223333333 34666777888744432111111 3455555555554
Q ss_pred hCCCCCCCCCCCCCc-cCCcccc--------ccCccceeeeccccccccchhh-------------------hcccccCC
Q psy1288 719 SGPVLQRYPETPNKA-DGSENVR--------NQDQKLYYHYLGTDQKDDILIA-------------------EVLDMLKF 770 (1012)
Q Consensus 719 ~l~~~~~~~d~~~~~-GgS~g~~--------~~~~~~~~~~~~~t~~~~~~~~-------------------~~~~~~~~ 770 (1012)
. +|.++..+ |-|.|.. .++.-...+++++..-.|++++ ++.+++.-
T Consensus 194 ~------~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~ 267 (409)
T KOG1838|consen 194 R------YPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYNRALTLNLKRIVLR 267 (409)
T ss_pred h------CCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHHHHHHHhHHHHHhh
Confidence 4 44454444 6676622 1222356677777777776633 12222111
Q ss_pred CCCC---CCCCCc-----------------ccCCCCCChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCC
Q psy1288 771 NKFT---IGYFWE-----------------SDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVS 830 (1012)
Q Consensus 771 ~~~~---~~~~~~-----------------~~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~ 830 (1012)
+..+ ....|. ..||-++ --++++.-|++++++ +|+.|+|+|++.+||.||
T Consensus 268 ~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~-------~I~VP~L~ina~DDPv~p 337 (409)
T KOG1838|consen 268 HRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVD-------KIKVPLLCINAADDPVVP 337 (409)
T ss_pred hhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhcc-------cccccEEEEecCCCCCCC
Confidence 1110 011110 0223332 235688999999999 999999999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q psy1288 831 PVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 865 (1012)
Q Consensus 831 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH 865 (1012)
.. +.=.-.+.+.. -+.|++-...||
T Consensus 338 ~~-~ip~~~~~~np---------~v~l~~T~~GGH 362 (409)
T KOG1838|consen 338 EE-AIPIDDIKSNP---------NVLLVITSHGGH 362 (409)
T ss_pred cc-cCCHHHHhcCC---------cEEEEEeCCCce
Confidence 85 22221222221 567777777778
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.084 Score=55.80 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.++++||....................+ +.++.+|.||.|... . . ..........+..+.+. ...
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~---~---~~~~~~~~~~~~~~~~~--~~~ 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----P---A---GYSLSAYADDLAALLDA--LGL 87 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEecccCCCCCC----c---c---cccHHHHHHHHHHHHHH--hCC
Confidence 448999999875443222210111111112 899999999877543 0 0 01111112223333332 122
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++.+.|+|+||.++..++.++|+.+..++...+
T Consensus 88 ~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~ 121 (282)
T COG0596 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGP 121 (282)
T ss_pred CceEEEEecccHHHHHHHHHhcchhhheeeEecC
Confidence 3489999999999999999999998888887765
|
|
| >KOG3253|consensus | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.39 Score=55.53 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=37.5
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
.+.| +|++.|-+|.+|.+..-.++..++++. +.+++..+++|.+.-
T Consensus 303 mk~P-VLFV~Gsnd~mcspn~ME~vreKMqA~----------~elhVI~~adhsmai 348 (784)
T KOG3253|consen 303 MKQP-VLFVIGSNDHMCSPNSMEEVREKMQAE----------VELHVIGGADHSMAI 348 (784)
T ss_pred cCCc-eEEEecCCcccCCHHHHHHHHHHhhcc----------ceEEEecCCCccccC
Confidence 5677 999999999999988777777777764 568888899998753
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=95.00 E-value=5.6 Score=41.81 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=96.0
Q ss_pred eEeeeEEECCC-CcEEEEEEeCCCCceEEEEEEECCCCcee--ceee---cceeeeeeEEeeCCCeEEEEecCCCCCccc
Q psy1288 157 VSLGSYSFSED-GKTLAYCLSSSGSDWTSMHFKDVATGKEY--PEVL---HRLKFVSIAWTHDHKGVFYSNQEPKSKSKK 230 (1012)
Q Consensus 157 ~~i~~~~~SPD-Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~--~~t~---~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~ 230 (1012)
.++-.++|+|- |..|| +... ...|+++++.++... ...+ ......+++|||.|+.|+-.+.+..
T Consensus 15 ~r~W~~awhp~~g~ilA-scg~----Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t----- 84 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILA-SCGT----DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT----- 84 (312)
T ss_pred CcEEEEEeccCCceEEE-eecC----CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce-----
Confidence 36778899998 76443 3321 237888888754321 1111 1223578999999998877765421
Q ss_pred CCCCCceEEEEeecc-------c----cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCcee
Q psy1288 231 HSKKNRSSAYHLTVN-------V----APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVL 299 (1012)
Q Consensus 231 ~~~~~~~l~~~~~~~-------~----~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~ 299 (1012)
..+++...+ + ..+....|+.+|..|+--+... ..=++.++. ..+.+-...|.++..+..
T Consensus 85 ------~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK--SVWiWe~de-ddEfec~aVL~~HtqDVK- 154 (312)
T KOG0645|consen 85 ------VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK--SVWIWEIDE-DDEFECIAVLQEHTQDVK- 154 (312)
T ss_pred ------EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC--eEEEEEecC-CCcEEEEeeecccccccc-
Confidence 112221100 0 2233456999999888776432 233444442 111110112222222221
Q ss_pred eeeEEecCCEEEEEEEcCceEEEEEEecCCCce--eeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEE--EeC
Q psy1288 300 DWATCVANDKLILSYIHHVKNVMHLHDLASGKH--LYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFH--CNI 373 (1012)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~--~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~--~d~ 373 (1012)
.+.+-....|+++..-+..-++|..+. ++.. .+.|.....++...+|++.|.+++-..+. ..-.||+ .++
T Consensus 155 -~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD--~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 155 -HVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD--GTVSIWRLYTDL 228 (312)
T ss_pred -EEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCC--cceEeeeeccCc
Confidence 122222134555544443344554443 3332 23444445577788888888776543322 2234555 444
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.1 Score=63.62 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=38.1
Q ss_pred cEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEE-Ee
Q psy1288 169 KTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFY-SN 221 (1012)
Q Consensus 169 k~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y-~~ 221 (1012)
.+|||..+..| +|.++|.+++..+.. .......-+|+|||||+.|+| ++
T Consensus 319 tkiAfv~~~~~----~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts 369 (912)
T TIGR02171 319 AKLAFRNDVTG----NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTG 369 (912)
T ss_pred eeEEEEEcCCC----eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEe
Confidence 57899887555 899999998887655 333444577999999999999 54
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.03 Score=40.85 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=18.9
Q ss_pred eecceeeeeeEEeeCCCeEEEEecCC
Q psy1288 199 VLHRLKFVSIAWTHDHKGVFYSNQEP 224 (1012)
Q Consensus 199 t~~~~~~~~~~WSpDG~~l~y~~~~~ 224 (1012)
+........++|||||++|+|++.+.
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred ccCCccccCEEEecCCCEEEEEecCC
Confidence 33344457899999999999998763
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.4 Score=52.86 Aligned_cols=184 Identities=11% Similarity=0.088 Sum_probs=94.1
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
..+++.++|.|+|++|+=+.- ..+-+++|+.++..+- ..-...+..+++|-|||+-++-...+.-.+-. +.-.
T Consensus 261 ~~RVs~VafHPsG~~L~Tasf-----D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW-DlRt 334 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASF-----DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW-DLRT 334 (459)
T ss_pred hhhheeeeecCCCceeeeccc-----ccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee-eccc
Confidence 358899999999999985433 2467889999987643 22333456889999999744433332110000 0001
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILS 313 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~ 313 (1012)
...+.+... -.+.|-.-.|+|.|-+|+--+.++ ..+++ |+..-. ..-+++..... +..+... ..+..+++
T Consensus 335 gr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn--t~kVW--DLR~r~---~ly~ipAH~nl-VS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 335 GRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDN--TCKVW--DLRMRS---ELYTIPAHSNL-VSQVKYSPQEGYFLVT 405 (459)
T ss_pred CcEEEEecc-cccceeeEeECCCceEEeecCCCC--cEEEe--eecccc---cceecccccch-hhheEecccCCeEEEE
Confidence 112222110 012222335999997776555332 23333 333221 01222222122 2222222 22444444
Q ss_pred EEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEE
Q psy1288 314 YIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIF 356 (1012)
Q Consensus 314 ~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~ 356 (1012)
..-|. .+.+|...+....+.+....+-|..+..++|+..|+
T Consensus 406 asyD~--t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 406 ASYDN--TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred cccCc--ceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 33333 344555545555555655566677788888887544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=6.4 Score=44.89 Aligned_cols=231 Identities=17% Similarity=0.113 Sum_probs=118.6
Q ss_pred CCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC-------CC
Q psy1288 108 YSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS-------GS 180 (1012)
Q Consensus 108 ~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~-------G~ 180 (1012)
....+|.|.++++....+ -.+|--+..+ .-..+.. -.+-...+||.|++|.--.... +.
T Consensus 37 ~~~~SP~G~~l~~~~~~~----V~~~~g~~~~-~l~~~~~---------~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG----VECWGGPSKA-KLVRFRH---------PDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred heeecCcchheehhhccc----eEEccccchh-heeeeec---------CCceecccCcccceeeeeccCCccChhhccC
Confidence 344568898887755432 2334221111 1122211 1355678999999987544322 11
Q ss_pred c---eEEEEEEECCCCceece----eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEe-eccc------
Q psy1288 181 D---WTSMHFKDVATGKEYPE----VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHL-TVNV------ 246 (1012)
Q Consensus 181 ~---~~~L~v~dl~tg~~~~~----t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~-~~~~------ 246 (1012)
. ..+++++|.++|....- ........-+.||-|.+..+++... .+..|+ ..|.
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-------------sl~i~e~t~n~~~~p~~ 169 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-------------SLYIHEITDNIEEHPFK 169 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC-------------eEEEEecCCccccCchh
Confidence 1 12799999999987531 1111122357899999888776422 233333 2221
Q ss_pred ----cceeeeeeecC--CCEEEEEECC-CC--CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcC
Q psy1288 247 ----APITSQYITNE--GPQFVFKTNK-DA--PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHH 317 (1012)
Q Consensus 247 ----~~i~~~~~s~d--g~~l~~~tn~-~~--~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (1012)
.++.-..|+|. ++.|++.+.. .+ ...+++.++..+.. ..+.|+.- +...+.|-. -++.+.+....+
T Consensus 170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l--~tk~lfk~-~~~qLkW~~--~g~~ll~l~~t~ 244 (561)
T COG5354 170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL--VTKNLFKV-SGVQLKWQV--LGKYLLVLVMTH 244 (561)
T ss_pred hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee--eeeeeEee-cccEEEEec--CCceEEEEEEEe
Confidence 23333347775 4456666543 22 23455555533221 11223222 222333322 224444322211
Q ss_pred --------ceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 318 --------VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 318 --------g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
|.+.|+++++. +...+..-.-.+.|..+.|+|.++++++.+ ...|..+-.+|+
T Consensus 245 ~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~--g~~pa~~s~~~l 305 (561)
T COG5354 245 TKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVIS--GYMPASVSVFDL 305 (561)
T ss_pred eecccceeccceEEEEeec-ccccceeccccccceeeeecccCCceeEEe--cccccceeeccc
Confidence 34789999984 432221111145677899999999877654 235666666776
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.1 Score=47.65 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=24.0
Q ss_pred EEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEE
Q psy1288 320 NVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIF 356 (1012)
Q Consensus 320 ~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~ 356 (1012)
+.|.++..++|+....+..- .+.++.++|+++|+.++
T Consensus 352 s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 352 SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIA 389 (420)
T ss_pred CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEe
Confidence 45666776667643333221 56788899999998655
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.24 Score=49.77 Aligned_cols=80 Identities=14% Similarity=0.023 Sum_probs=55.9
Q ss_pred CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHH
Q psy1288 449 GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAA 528 (1012)
Q Consensus 449 ~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~ 528 (1012)
.++......|+++|+.|+-+|-.- --|.+ ........|+...+++..++- ..+++.++|.|+|+-+...
T Consensus 16 ~~d~~~a~~l~~~G~~VvGvdsl~-----Yfw~~----rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~ 84 (192)
T PF06057_consen 16 DLDKQIAEALAKQGVPVVGVDSLR-----YFWSE----RTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPF 84 (192)
T ss_pred hhhHHHHHHHHHCCCeEEEechHH-----HHhhh----CCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHH
Confidence 566667778888999999998531 12322 222344567777777666552 3578999999999988888
Q ss_pred HHhhCCCceeE
Q psy1288 529 CINQRPDLFGA 539 (1012)
Q Consensus 529 ~~~~~p~~f~a 539 (1012)
+.++.|...++
T Consensus 85 ~~nrLp~~~r~ 95 (192)
T PF06057_consen 85 IYNRLPAALRA 95 (192)
T ss_pred HHhhCCHHHHh
Confidence 88888864433
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.19 Score=54.53 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=43.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc-eeeeeeEEeeCCCeEEEEecC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
.-+..+.|||||++||=.+-. ..+.++|-.+|+.+..-.+. .....++||.|.+-|+-.+.+
T Consensus 368 ~lVn~V~fSPd~r~IASaSFD-----kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 368 ALVNHVSFSPDGRYIASASFD-----KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred hheeeEEECCCccEEEEeecc-----cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence 346789999999999855432 26889999999976422222 235789999998755444443
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=94.41 E-value=5.5 Score=44.95 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=47.8
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
..+..+.|+-||..||+..-. | .+++++..++....+....+.+.++.|..+|.+|+-...+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~-G----~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSED-G----EARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecC-c----EEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 357899999999999986643 2 7888898877766565666667889999999988765543
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.042 Score=61.96 Aligned_cols=53 Identities=13% Similarity=-0.060 Sum_probs=44.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+||+||++|.-||+..+.+++++++..+.. ....+++++|+.||.+..
T Consensus 257 ~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~----~~~~~l~~~~gagH~~~~ 309 (330)
T PRK10749 257 DITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHP----CEGGKPLVIKGAYHEILF 309 (330)
T ss_pred CCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCC----CCCceEEEeCCCcchhhh
Confidence 77899999999999999999999999999887641 113589999999998763
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.16 Score=57.83 Aligned_cols=44 Identities=27% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+|+++|++|..||...+.++.+.+. ..++++. +.||.+-
T Consensus 294 ~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p-----------~a~l~~i-~~GH~~~ 337 (354)
T PLN02578 294 KLSCPLLLLWGDLDPWVGPAKAEKIKAFYP-----------DTTLVNL-QAGHCPH 337 (354)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCC-----------CCEEEEe-CCCCCcc
Confidence 678999999999999999988877755442 2245555 5899864
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.3 Score=42.75 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=35.1
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 649 TLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 649 vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
++++....|....+.++.+.+.. ...+.+.++|.|+|..- .+.+.++++|+.
T Consensus 127 ~~vllq~gDEvLDyr~a~~~y~~-------------~y~~~v~~GGdH~f~~f----e~~l~~I~~F~~ 178 (180)
T PRK04940 127 CLVILSRNDEVLDSQRTAEELHP-------------YYEIVWDEEQTHKFKNI----SPHLQRIKAFKT 178 (180)
T ss_pred EEEEEeCCCcccCHHHHHHHhcc-------------CceEEEECCCCCCCCCH----HHHHHHHHHHHh
Confidence 67788888898888777654422 12367889999998642 234566677763
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.11 Score=56.55 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=31.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+||++|++|. +++..+..+...+ - .++++++++.||...
T Consensus 229 ~i~~P~lii~G~~D~-~~~~~~~~~~~~~----~-------~~~~~~~~~~gH~~~ 272 (288)
T TIGR01250 229 EIKVPTLLTVGEFDT-MTPEAAREMQELI----A-------GSRLVVFPDGSHMTM 272 (288)
T ss_pred ccCCCEEEEecCCCc-cCHHHHHHHHHhc----c-------CCeEEEeCCCCCCcc
Confidence 677999999999996 6665544443222 1 346788999999754
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.56 Score=51.54 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=96.6
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCC--ceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATG--KEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSK 233 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg--~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~ 233 (1012)
...+..++|.|+||+|.-..+.+ .++|| +..+= |.. +......+..+.||++|.+++-....+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SG---EFtLW--Ng~~fnFEti-lQaHDs~Vr~m~ws~~g~wmiSgD~gG--------- 160 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSG---EFTLW--NGTSFNFETI-LQAHDSPVRTMKWSHNGTWMISGDKGG--------- 160 (464)
T ss_pred ccceeeEEEcCCCceeEeecccc---cEEEe--cCceeeHHHH-hhhhcccceeEEEccCCCEEEEcCCCc---------
Confidence 45688999999999998776643 24555 22110 000 111122357799999998765332211
Q ss_pred CCceEEEEeeccc---------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE
Q psy1288 234 KNRSSAYHLTVNV---------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC 304 (1012)
Q Consensus 234 ~~~~l~~~~~~~~---------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (1012)
-.-+++...|. +.|+...+||....|+--+++ ..|...|..-+.. -+.|..+. .+ ...+.+
T Consensus 161 --~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdD----g~ikiWdf~~~ke--e~vL~GHg-wd-VksvdW 230 (464)
T KOG0284|consen 161 --MIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDD----GTIKIWDFRMPKE--ERVLRGHG-WD-VKSVDW 230 (464)
T ss_pred --eEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCC----CeEEEEeccCCch--hheeccCC-CC-cceecc
Confidence 01112211110 233444588855544444432 2344444433331 12232222 22 233444
Q ss_pred ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 305 VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 305 ~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
-..+.++++...+. -+.+||..+|.-.-.+..-...|..+.|+++++.|+ +.+.. ..+-++|+
T Consensus 231 HP~kgLiasgskDn--lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll-t~skD---~~~kv~Di 293 (464)
T KOG0284|consen 231 HPTKGLIASGSKDN--LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL-TGSKD---QSCKVFDI 293 (464)
T ss_pred CCccceeEEccCCc--eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeE-EccCC---ceEEEEeh
Confidence 44466777666554 567889887765433333345677889999996544 33322 24566676
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.16 Score=54.51 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=33.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|+|+|++|..|+...++++...+ - -+.++++++.||...
T Consensus 193 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~-------~~~~~~~~~~gH~~~ 237 (255)
T PRK10673 193 AWPHPALFIRGGNSPYVTEAYRDDLLAQF----P-------QARAHVIAGAGHWVH 237 (255)
T ss_pred CCCCCeEEEECCCCCCCCHHHHHHHHHhC----C-------CcEEEEeCCCCCeee
Confidence 45699999999999999976665554332 1 356788999999753
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.071 Score=58.64 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=44.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKL-RDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.-+.|++|.||.+|.-||+....++++.++++| . +|+|+.++..+|...
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a-------~V~~~~~~~~~H~~~ 266 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGA-------DVEYVRYPGGGHLGA 266 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCC-------CEEEEecCCCChhhh
Confidence 345999999999999999999999999999998 6 999999999999743
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.072 Score=60.99 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=33.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||+||++|.-||+.++.+++ - .+.+.++++.||-..
T Consensus 312 ~i~~Pvlii~g~~D~~vp~~~~~~l~-------~-------~~~~~~~~~~gH~~~ 353 (371)
T PRK14875 312 SLAIPVLVIWGEQDRIIPAAHAQGLP-------D-------GVAVHVLPGAGHMPQ 353 (371)
T ss_pred cCCCCEEEEEECCCCccCHHHHhhcc-------C-------CCeEEEeCCCCCChh
Confidence 67799999999999999987765432 1 357788999999764
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.043 Score=53.15 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=37.0
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
.+.|+|+++|++|.-||+.+..+++++++ . +.+++++++.+|+
T Consensus 103 ~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~-------~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 103 IRIPVLFIHGENDPLVPPEQVRRLYEALP---G-------PKELYIIPGAGHF 145 (145)
T ss_dssp TTSEEEEEEETT-SSSHHHHHHHHHHHHC---S-------SEEEEEETTS-TT
T ss_pred cCCcEEEEEECCCCcCCHHHHHHHHHHcC---C-------CcEEEEeCCCcCc
Confidence 34799999999999999999999999998 3 8899999999995
|
... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=8.6 Score=40.90 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=45.0
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece--eecceeeeeeEEeeCCCeEEEE
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE--VLHRLKFVSIAWTHDHKGVFYS 220 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~--t~~~~~~~~~~WSpDG~~l~y~ 220 (1012)
+....+.-++||||++|.-+.+.....+-.|-|+|...+-.+.- ...+.+...+.|.+||+.++..
T Consensus 112 ~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 112 GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred CceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 44556778999999999777665444445788899875443321 1223334679999999988765
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=93.94 E-value=10 Score=40.44 Aligned_cols=197 Identities=12% Similarity=0.140 Sum_probs=89.1
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCcee-ceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcc--c--C
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEY-PEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSK--K--H 231 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~-~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~--~--~ 231 (1012)
.+++.+|.||.+.|+.+.+..+ .|+.++++ |+.+ ...+.+ ...-++++..+|+ ++.+..+....-. . .
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE---
T ss_pred CccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEecc
Confidence 3899999999999877777644 78999986 4543 333433 2346678876664 3334332110000 0 0
Q ss_pred CCC-CceEEEEee-----ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeC--CCCcccCcEEee--ccCC--Ccee
Q psy1288 232 SKK-NRSSAYHLT-----VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDF--DNFAESNWKTLI--EENK--DDVL 299 (1012)
Q Consensus 232 ~~~-~~~l~~~~~-----~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl--~~~~~~~~~~l~--~~~~--~~~~ 299 (1012)
... ....+.+.. .+..+++-..|++.+++|++...+. ...|+.++. ...... ..... .... -.-+
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~--P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK--PKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS--SEEEEEEESTT-SS--E-EEE-HHHH-HT--SS--
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC--ChhhEEEccccCcccee-eccccccccccceeccc
Confidence 000 000001101 0113455556899999999886543 356888876 211100 00000 0000 0012
Q ss_pred eeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCc---------eEEEeecccccCcEEEEEecCCCCCcEEE
Q psy1288 300 DWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDV---------GTIVGFSGKKKYSEIFYSFMSFLQPTIIF 369 (1012)
Q Consensus 300 ~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~---------~~v~~~~~spdg~~l~~~~ss~~~p~~l~ 369 (1012)
..+.. ...+++++.+.. ...|..+|. +|+.+..+.+.. -...+++++++| .||++. +|...|
T Consensus 174 S~l~~~p~t~~lliLS~e--s~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs----EpNlfy 245 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDE--SRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS----EPNLFY 245 (248)
T ss_dssp -EEEEETTTTEEEEEETT--TTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE----TTTEEE
T ss_pred cceEEcCCCCeEEEEECC--CCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEc----CCceEE
Confidence 22222 222466655433 245666675 566544444331 124567788876 566665 366666
Q ss_pred EE
Q psy1288 370 HC 371 (1012)
Q Consensus 370 ~~ 371 (1012)
++
T Consensus 246 ~f 247 (248)
T PF06977_consen 246 RF 247 (248)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=93.93 E-value=19 Score=46.20 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=57.5
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEe-CCCCceEEEcCCCCCCC-CCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE--
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQD-SLDGEARVFLDPNNLSD-DGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK-- 188 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~-~~~g~~~~L~D~n~la~-~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~-- 188 (1012)
...+.+|+....... ...|-+.. ..+.+.+.+.+...-.. .....+-++.+-+|...|.+.... | +|.++
T Consensus 31 ~~sd~i~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~-G----di~~~~~ 104 (928)
T PF04762_consen 31 SDSDSIYFVLGPNEI-DYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS-G----DIILVRE 104 (928)
T ss_pred cCCCeEEEEECCCCc-ceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC-c----eEEEEEc
Confidence 445567776654321 12222221 11233456655432211 122356678888888877766553 3 57777
Q ss_pred --ECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 189 --DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 189 --dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
+.++.+..-...-..+...++||||+..|++++..
T Consensus 105 ~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~ 141 (928)
T PF04762_consen 105 DPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGE 141 (928)
T ss_pred cCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCC
Confidence 54444432222223346789999999999998743
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.21 Score=58.78 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=64.8
Q ss_pred CceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc----------------ChhHHHHHHhCCeEEEEEcC-CCCCC
Q psy1288 413 GTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF----------------SVTKIVFLRDFNGIYAIPNI-RGGGE 475 (1012)
Q Consensus 413 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~----------------~~~~~~~l~~~G~~v~~~d~-RG~g~ 475 (1012)
+..+.+|++.... .....|++++++||++.+...++ ...-..|.. -..++.+|. +|.|
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~--~~~~l~iDqP~G~G- 134 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN--EAYVIYVDQPAGVG- 134 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc--ccCeEEEeCCCCcC-
Confidence 5678888887654 24568999999999876643211 001123443 234555564 5644
Q ss_pred CchhHHhhhhcCCCcchHhHHHHHHHHHHH-cCCCCCCcEEEEecChHHHHHHHHHhh
Q psy1288 476 YGERWHDGGRLLNKQNVFDDFQCAAEYLIA-SGYTQSSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 476 ~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
++..-.. ..........+|+...++.+.+ .+.....++.|+|+|+||..+..++..
T Consensus 135 ~S~~~~~-~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~ 191 (462)
T PTZ00472 135 FSYADKA-DYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYR 191 (462)
T ss_pred cccCCCC-CCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHH
Confidence 3221100 0011112334566666654443 344556789999999999887666543
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.36 Score=53.29 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=55.8
Q ss_pred CeEEEEEcCCCCC-C-CchhHHhhh-h---cCCCcchHhHHHHHHHHHHHcCCCCCCcEE-EEecChHHHHHHHHHhhCC
Q psy1288 462 NGIYAIPNIRGGG-E-YGERWHDGG-R---LLNKQNVFDDFQCAAEYLIASGYTQSSRLA-IQGGSNGGLLTAACINQRP 534 (1012)
Q Consensus 462 G~~v~~~d~RG~g-~-~g~~~~~~~-~---~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p 534 (1012)
-|-|++.|.-|+. + .|..-.... + .....-++.|.+.+-+.|++.- .-+++. ++|+||||..++..+..+|
T Consensus 92 r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~L--GI~~l~avvGgSmGGMqaleWa~~yP 169 (368)
T COG2021 92 RFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDAL--GIKKLAAVVGGSMGGMQALEWAIRYP 169 (368)
T ss_pred ceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhc--CcceEeeeeccChHHHHHHHHHHhCh
Confidence 5899999998765 2 222211111 1 1223456788888887776652 235666 8999999999999999999
Q ss_pred CceeEEEEccC
Q psy1288 535 DLFGAAIVQVG 545 (1012)
Q Consensus 535 ~~f~a~v~~~~ 545 (1012)
++...++..+.
T Consensus 170 d~V~~~i~ia~ 180 (368)
T COG2021 170 DRVRRAIPIAT 180 (368)
T ss_pred HHHhhhheecc
Confidence 98877666655
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.6 Score=46.60 Aligned_cols=71 Identities=23% Similarity=0.225 Sum_probs=45.3
Q ss_pred cCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc---e--eceeecceeeeeeEEeeCCCeEEEE
Q psy1288 146 LDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK---E--YPEVLHRLKFVSIAWTHDHKGVFYS 220 (1012)
Q Consensus 146 ~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~---~--~~~t~~~~~~~~~~WSpDG~~l~y~ 220 (1012)
++.+.|.. +...+..+.||-|||++|-.... ..|++++++.=+ - .+...+-...+.++|+||-+.|++.
T Consensus 77 l~~~~LKg-H~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 77 LNVSVLKG-HKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhhhhhhc-cCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 34444432 23468899999999999866543 268888876421 1 1222322234678999999988876
Q ss_pred ec
Q psy1288 221 NQ 222 (1012)
Q Consensus 221 ~~ 222 (1012)
-.
T Consensus 151 ~~ 152 (420)
T KOG2096|consen 151 VK 152 (420)
T ss_pred Ec
Confidence 54
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.14 Score=61.99 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=32.3
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
++..|+|+++|=.| ....++...|.++++.+ +..+++=|. +|+
T Consensus 230 ~i~vP~l~~~gw~D--~~~~g~~~~~~~~~~~~--------~~~lilGpw-~H~ 272 (550)
T TIGR00976 230 GSDVPTLVTGGWYD--NHSRGSIRLFLAVHRGG--------AQRLVVGPW-THS 272 (550)
T ss_pred CCCCCEEEeCcccC--CCCchHHHHHHHHhhcC--------CceEEEccC-CCC
Confidence 78899999999999 36678888898888752 456666443 354
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.077 Score=59.30 Aligned_cols=112 Identities=10% Similarity=0.041 Sum_probs=59.6
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHH-HHHHh--CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchH-hHHHHHHHHHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKI-VFLRD--FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVF-DDFQCAAEYLI 504 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~-~~l~~--~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~-~D~~a~~~~l~ 504 (1012)
+...|+++++||-........|..... .++.. ..+.|+++|....... .+..+... ...+ .-+...+..|.
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~n---~~~vg~~la~~l~~L~ 142 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVAN---TRLVGRQLAKFLSFLI 142 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhhh---HHHHHHHHHHHHHHHH
Confidence 456799999999755542334433333 34554 4799999998632211 11111100 0011 12233356666
Q ss_pred HcCCCCCCcEEEEecChHHHHHHHHHhhCCC--ceeEEEEccC
Q psy1288 505 ASGYTQSSRLAIQGGSNGGLLTAACINQRPD--LFGAAIVQVG 545 (1012)
Q Consensus 505 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~~ 545 (1012)
....+++++|-++|||.|+++++.+...... .+..+...-|
T Consensus 143 ~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 143 NNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred hhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 5556789999999999999999988877655 4555555544
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.46 Score=52.84 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=32.9
Q ss_pred CCCceEEEcccCCC-----C----CCCcch-HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 814 QYPATLLMTADHDD-----R----VSPVHS-LKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~-----r----v~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+..|+||+++..|. . .|.... .+||.+++. |..+++-++.||--
T Consensus 188 ~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~----------~~~~~~~~~~gH~~ 241 (313)
T PLN00021 188 LDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA----------PAVHFVAKDYGHMD 241 (313)
T ss_pred CCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC----------CeeeeeecCCCcce
Confidence 44999999999873 2 335444 788877765 77888888999963
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.2 Score=51.44 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=34.9
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
...|++|+||.+|.-||..+|.++|++. .+++.++.+|.+...
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~--------------~~~~~~ggdH~f~~~ 177 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC--------------RQTVEEGGNHAFVGF 177 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc--------------ceEEECCCCcchhhH
Confidence 3378899999999999999999999943 223569999999654
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.074 Score=60.05 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=41.7
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec-ceeeeeeEEeeCCCeEEEEe
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH-RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~-~~~~~~~~WSpDG~~l~y~~ 221 (1012)
.+..+.+||||++||-+..+ | -|+|+|.++.+.+-.... -++.--++||||||+|+--.
T Consensus 292 ~in~f~FS~DG~~LA~VSqD-G----fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQD-G----FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred cccceeEcCCCceEEEEecC-c----eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 56789999999999976543 3 789999887765432111 12235589999999887543
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.7 Score=52.76 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=67.9
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec---ee------ecceeeeeeEEeeCCCeEEEEecCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP---EV------LHRLKFVSIAWTHDHKGVFYSNQEPKS 226 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~---~t------~~~~~~~~~~WSpDG~~l~y~~~~~~~ 226 (1012)
...+..+.++|.|+.||-+.-. | .++++|++++.... .. ........++|+|||..|++...+..
T Consensus 138 ~apVl~l~~~p~~~fLAvss~d-G----~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~- 211 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCD-G----KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT- 211 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecC-c----eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-
Confidence 4567889999999999976543 3 78999999887431 11 11112467999999888877754321
Q ss_pred CcccCCCCCceEEEEee---------c--cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCC
Q psy1288 227 KSKKHSKKNRSSAYHLT---------V--NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDN 281 (1012)
Q Consensus 227 ~g~~~~~~~~~l~~~~~---------~--~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~ 281 (1012)
..+|... . ....+.+..|||.|++|+-.+- +.+|...|.++
T Consensus 212 ----------Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~----~g~I~vWnv~t 263 (933)
T KOG1274|consen 212 ----------VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL----DGQILVWNVDT 263 (933)
T ss_pred ----------EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc----CCcEEEEeccc
Confidence 1111110 0 0123455679999999988763 45677777764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.3 Score=47.76 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=39.6
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC---CCceece----eec---ceeeeeeEEeeCCCeEEEEe
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA---TGKEYPE----VLH---RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~---tg~~~~~----t~~---~~~~~~~~WSpDG~~l~y~~ 221 (1012)
.+..+++||||.+||+.+...+.. +|++--+. .|....+ ... ......+.|++|++ |+...
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~--~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V~~ 183 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGG--RVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVVLG 183 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCC--eEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEEEe
Confidence 789999999999999999877664 55555432 3311111 111 12346899999886 55554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.11 Score=47.42 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=37.0
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
..|+||+++++|+.+|..-++.+.++|.. ..+++..+.|||..
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~-----------s~lvt~~g~gHg~~ 76 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG-----------SRLVTVDGAGHGVY 76 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC-----------ceEEEEeccCccee
Confidence 49999999999999999999998777653 36778889999975
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.16 Score=58.89 Aligned_cols=45 Identities=16% Similarity=-0.065 Sum_probs=32.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+|+++|++|.-+ +.++.++... .+. ++++++.++.||..-
T Consensus 323 ~I~vP~liI~G~~D~i~-~~~~~~~~~~---~~~-------~~~~~~i~~aGH~~~ 367 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMN-YEGAVEARKR---MKV-------PCEIIRVPQGGHFVF 367 (402)
T ss_pred cCCCCEEEEEeCCCCCC-cHHHHHHHHH---cCC-------CCcEEEeCCCCCeee
Confidence 67899999999999644 4444444322 233 678999999999754
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.88 Score=54.10 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec
Q psy1288 118 YFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP 197 (1012)
Q Consensus 118 ~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~ 197 (1012)
+||.. .+.+..+.||..+.. ...|++.. +...+..+.+.|+..++|= |+...++++||+-+|..++
T Consensus 506 yYFat-as~D~tArLWs~d~~-~PlRifag-------hlsDV~cv~FHPNs~Y~aT-----GSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 506 YYFAT-ASHDQTARLWSTDHN-KPLRIFAG-------HLSDVDCVSFHPNSNYVAT-----GSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred eEEEe-cCCCceeeeeecccC-Cchhhhcc-------cccccceEEECCccccccc-----CCCCceEEEEEcCCCcEEE
Confidence 34443 345567788876652 22333332 2235667899999988874 3444689999999988765
Q ss_pred ee-ecceeeeeeEEeeCCCeEEEE
Q psy1288 198 EV-LHRLKFVSIAWTHDHKGVFYS 220 (1012)
Q Consensus 198 ~t-~~~~~~~~~~WSpDG~~l~y~ 220 (1012)
.- -+......+++||+|++|+-.
T Consensus 572 iF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 572 IFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred EecCCCCceEEEEEcCCCceEeec
Confidence 43 333446889999999977643
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.1 Score=50.38 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=39.5
Q ss_pred HHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCc
Q psy1288 500 AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCG 553 (1012)
Q Consensus 500 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~ 553 (1012)
-.|++++.. |.+..+.|.|+||+.++....++|++|..+|+.+| ++|.+
T Consensus 91 erYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSG---vYdar 139 (227)
T COG4947 91 ERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSG---VYDAR 139 (227)
T ss_pred HHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecc---eeeHH
Confidence 356666533 45567789999999999999999999999999999 66643
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.07 Score=55.86 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=34.4
Q ss_pred CCCCceEEEcccCCCCCCCcc-hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+|+.|+|+++|++|--.|-.+ ++++.+.|++.|-+. +++++.||++||-+.-|
T Consensus 113 ~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~-----~~~~l~Y~~aGH~i~~P 166 (213)
T PF08840_consen 113 KIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPH-----NVEHLSYPGAGHLIEPP 166 (213)
T ss_dssp G--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT----------EEEEETTB-S---ST
T ss_pred HcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCC-----cceEEEcCCCCceecCC
Confidence 555999999999999999764 557778899887622 68999999999988755
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.29 Score=52.48 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=35.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+=+|...++.+..+++.+ ++++.|+++|+ |..|..|++ ||-..
T Consensus 237 ~~~~~~l~~g~~~~~~~~pNr--~L~~~L~~~g~-------~~~yre~~G-gHdw~ 282 (299)
T COG2382 237 TDERIVLTTGGEEGDFLRPNR--ALAAQLEKKGI-------PYYYREYPG-GHDWA 282 (299)
T ss_pred ccceEEeecCCccccccchhH--HHHHHHHhcCC-------cceeeecCC-CCchh
Confidence 444666777777777777665 57799999999 999999999 99543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=92.92 E-value=4 Score=48.79 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=95.9
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
.+-+.++|||-++|+ +.+. ...+++|.+++......-.++ .....+.|+|-| +||.+.-.. ...
T Consensus 453 PVyg~sFsPd~rfLl-ScSE----D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D--------~tA 517 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLL-SCSE----DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHD--------QTA 517 (707)
T ss_pred ceeeeeeccccccee-eccC----CcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCC--------cee
Confidence 456889999998875 3332 346667777665543322222 223557788876 556543110 112
Q ss_pred eEEEEeec--------cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCC
Q psy1288 237 SSAYHLTV--------NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVAND 308 (1012)
Q Consensus 237 ~l~~~~~~--------~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (1012)
+++-.... ...++....+.|....++ +. .....+-..|+.++. ..+++......+..-...+.|+
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~a--TG--SsD~tVRlWDv~~G~---~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVA--TG--SSDRTVRLWDVSTGN---SVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccc--cC--CCCceEEEEEcCCCc---EEEEecCCCCceEEEEEcCCCc
Confidence 22221110 002233333556544332 21 112233344555554 3566655544444433444544
Q ss_pred EEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 309 KLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+|+-. .+ ...|.+||+.+|+....+-...+.+..+++|.||+.|+..... .+|-++|+
T Consensus 591 ~LaSg-~e--d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D----nsV~lWD~ 648 (707)
T KOG0263|consen 591 YLASG-DE--DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD----NSVRLWDL 648 (707)
T ss_pred eEeec-cc--CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCC----CeEEEEEc
Confidence 44332 22 3568889998777654444446677788999999876643322 23555576
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.24 Score=52.17 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||++|++|..++ +..+.+++..- .+.++++|+.||...
T Consensus 192 ~~~~P~l~i~g~~D~~~~-----~~~~~~~~~~~-------~~~~~~~~~~gH~~~ 235 (251)
T TIGR03695 192 ALTIPVLYLCGEKDEKFV-----QIAKEMQKLLP-------NLTLVIIANAGHNIH 235 (251)
T ss_pred CCCCceEEEeeCcchHHH-----HHHHHHHhcCC-------CCcEEEEcCCCCCcC
Confidence 677999999999997653 22333444322 568888999999764
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >KOG1455|consensus | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.35 Score=51.78 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=41.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++.-|.||+||+.|.-+.+.-|.++|+....+-. .+.+||+.-|+..
T Consensus 244 ~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~DK---------TlKlYpGm~H~Ll 290 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTDPKVSKELYEKASSSDK---------TLKLYPGMWHSLL 290 (313)
T ss_pred cccccEEEEecCCCcccCcHHHHHHHHhccCCCC---------ceeccccHHHHhh
Confidence 6779999999999999999999999998777633 6789999999975
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.9 Score=48.85 Aligned_cols=206 Identities=13% Similarity=0.056 Sum_probs=104.7
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCce-----ece-eecceeeeeeEEeeCCCeEEEEecCCCCCc
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKE-----YPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKS 228 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~-----~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g 228 (1012)
|...++..++-|.|-+++ .|+-.+++..||..+=.. +++ ..+...+.+.+||+-|..|+.++......-
T Consensus 166 gtk~Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred CceEEEEeeecCCCceee-----eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 556788999999998886 356678999999876432 121 112223578999999999988863321000
Q ss_pred ccCCCCCceEEEEe-------eccc----cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCc
Q psy1288 229 KKHSKKNRSSAYHL-------TVNV----APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDD 297 (1012)
Q Consensus 229 ~~~~~~~~~l~~~~-------~~~~----~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~ 297 (1012)
.+......+-+.. ..|. ..+....|.|+.+..++.+..++ ..+|+-++-........+.........
T Consensus 241 -~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg-tlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 241 -LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG-TLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred -EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC-cEEEEecCCchhheeEEeeccCCCccc
Confidence 0000000000000 0111 22345569999998888886554 344554432221111111111222222
Q ss_pred eeeeeEEecCCEEEEEEEcCceEEEEEEecCCCcee------eeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEE
Q psy1288 298 VLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHL------YTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~------~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
....-.+..++.++...-.+|.-++| +. .+... +.-..+...++.++||+||+.|+- .++.+ .|-++
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W--~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS--Rg~D~--tLKvW 391 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIW--DK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS--RGFDD--TLKVW 391 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeee--ec-CCcccccceEeeeccCCCCceeEEEeccccchhhh--ccCCC--ceeee
Confidence 23333333334455555556554544 43 12111 111223346778899999987652 22222 35566
Q ss_pred eCC
Q psy1288 372 NIP 374 (1012)
Q Consensus 372 d~~ 374 (1012)
|+.
T Consensus 392 DLr 394 (641)
T KOG0772|consen 392 DLR 394 (641)
T ss_pred ecc
Confidence 663
|
|
| >KOG4391|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.76 Score=46.49 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=38.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
+.+.|.|++.|..|--||+.+-.|+|...-.+.. ++..||+..|-
T Consensus 219 ~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~K---------rl~eFP~gtHN 263 (300)
T KOG4391|consen 219 QCRMPFLFISGLKDELVPPVMMRQLYELCPSRTK---------RLAEFPDGTHN 263 (300)
T ss_pred cccCceEEeecCccccCCcHHHHHHHHhCchhhh---------hheeCCCCccC
Confidence 5569999999999999999999999998877643 67789998883
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=13 Score=40.69 Aligned_cols=162 Identities=12% Similarity=0.064 Sum_probs=90.5
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCC---CcccC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKS---KSKKH 231 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~---~g~~~ 231 (1012)
...+..++++|+.+++|= |++.-.-|+++..+|+..- ++-...+.....||.||..|+-....+.. ..+ .
T Consensus 64 ~~svFavsl~P~~~l~aT-----GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-t 137 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVAT-----GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-T 137 (399)
T ss_pred CCceEEEEeCCCCceEEe-----cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-c
Confidence 446778899997666652 2223367888998998532 33333456889999999755432221110 000 0
Q ss_pred CCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEE
Q psy1288 232 SKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLI 311 (1012)
Q Consensus 232 ~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 311 (1012)
+.....+. ....++++-.|.|.+..|+.-++ ...++...+.+.. ...++..........-..++|++++
T Consensus 138 g~~~~~~~----~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 138 GGEQWKLD----QEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred CceEEEee----cccCceEEEEecccccEEEeecC----CCcEEEEECCCcc---eeeEecCCCCCcccccccCCCceEE
Confidence 00000110 01145566668887776666654 3456776665532 2445554433333333455667776
Q ss_pred EEEEcCceEEEEEEecCCCceeeeec
Q psy1288 312 LSYIHHVKNVMHLHDLASGKHLYTFP 337 (1012)
Q Consensus 312 ~~~~~~g~~~l~~~dl~~G~~~~~l~ 337 (1012)
..+.+ ..|.+|++.+|.+.-.+.
T Consensus 207 tgy~d---gti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 207 TGYDD---GTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred EEecC---ceEEEEecCCCceeEEec
Confidence 66653 468889998887655544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=14 Score=47.09 Aligned_cols=195 Identities=16% Similarity=0.130 Sum_probs=92.6
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEee-CCCeEEEEecCCCCCcccCCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTH-DHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSp-DG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
.+....|+|..+..+.+.+.+| .|.++|+.+++...... .......+.|+| |+..|+-.+.+....-. +....
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg----~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW-d~~~~ 608 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEG----VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW-SINQG 608 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCC----eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEE-ECCCC
Confidence 4567889876433344444444 79999999887654222 223457899997 66655444433210000 00000
Q ss_pred ceEEEEeeccccceeeeee-ecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEE
Q psy1288 236 RSSAYHLTVNVAPITSQYI-TNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~-s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 314 (1012)
. .+.... ....+....| +++|..|+..+. +..+...|+..... ....+..+. ..+..+.+.+++.++ +.
T Consensus 609 ~-~~~~~~-~~~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~-~~~~~~~h~--~~V~~v~f~~~~~lv-s~ 678 (793)
T PLN00181 609 V-SIGTIK-TKANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKL-PLCTMIGHS--KTVSYVRFVDSSTLV-SS 678 (793)
T ss_pred c-EEEEEe-cCCCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCc-cceEecCCC--CCEEEEEEeCCCEEE-EE
Confidence 0 000000 0012222234 345666665542 34677788765431 112222222 223344444544444 33
Q ss_pred EcCceEEEEEEecCCC------ceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHLHDLASG------KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G------~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+ ..|.+|++..+ +....+......+..+.+++++..|+.... -..+++++.
T Consensus 679 s~D--~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~----D~~v~iw~~ 737 (793)
T PLN00181 679 STD--NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE----TNEVFVYHK 737 (793)
T ss_pred ECC--CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC----CCEEEEEEC
Confidence 333 35777887432 222233322233445667888775544332 235777776
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=92.60 E-value=3 Score=48.23 Aligned_cols=191 Identities=14% Similarity=0.089 Sum_probs=99.3
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCe-EEEEecCCC------CCc
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKG-VFYSNQEPK------SKS 228 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~-l~y~~~~~~------~~g 228 (1012)
...+..+++.|-|.+||=+. +.-.++||.++||.-+....-...+..++|.|.++. |+-++.... ..|
T Consensus 400 tg~Vr~iSvdp~G~wlasGs-----dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGS-----DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred CCeEEEEEecCCcceeeecC-----CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 34677889999999998543 334788899999986554333444678999998864 222221111 111
Q ss_pred c-cC--------------CCCCce-EEEEee-cc-c-----------cceeeeeeecCCCEEEEEECCCCCCceEEEEeC
Q psy1288 229 K-KH--------------SKKNRS-SAYHLT-VN-V-----------APITSQYITNEGPQFVFKTNKDAPNYRLITIDF 279 (1012)
Q Consensus 229 ~-~~--------------~~~~~~-l~~~~~-~~-~-----------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl 279 (1012)
. .. ...+.+ +.+... .. . ..+....|.-+|++|..++..+. +..++.-.+
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~-~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG-NKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC-cceEEEEec
Confidence 1 00 000000 111111 00 0 12223348889999988886543 445666666
Q ss_pred CCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEe
Q psy1288 280 DNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSF 359 (1012)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ 359 (1012)
..... ...+....+.+.....-+-...++++.. ..+.+|++..++..+.+-...-.++.++.+|.|+.|++..
T Consensus 554 SK~~s---Q~PF~kskG~vq~v~FHPs~p~lfVaTq----~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 554 SKRKS---QSPFRKSKGLVQRVKFHPSKPYLFVATQ----RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred ccccc---cCchhhcCCceeEEEecCCCceEEEEec----cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 54321 1111112222222111111134555432 4578889855443333332345577888899998877654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=92.57 E-value=3.9 Score=46.68 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCCeeEEEEEeCCCCceEEEcCCCCCCC----CCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-ee
Q psy1288 125 GLQNHSVMYIQDSLDGEARVFLDPNNLSD----DGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EV 199 (1012)
Q Consensus 125 ~~~~~~~l~~~~~~~g~~~~L~D~n~la~----~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t 199 (1012)
+++.+...+.....+|.-. ++.-+..-+ .+...+...+|||||.-++ ++.++| .|-++. .+|-.+. +.
T Consensus 70 ~~g~~~d~~~i~s~DGkf~-il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG----~iKiWS-rsGMLRStl~ 142 (737)
T KOG1524|consen 70 GGGKGSDTLLICSNDGRFV-ILNKSARVERSISAHAAAISSGRWSPDGAGLL-TAGEDG----VIKIWS-RSGMLRSTVV 142 (737)
T ss_pred CCCCCcceEEEEcCCceEE-EecccchhhhhhhhhhhhhhhcccCCCCceee-eecCCc----eEEEEe-ccchHHHHHh
Confidence 3344556666655555533 333222111 0224567889999998765 333333 555555 3555433 22
Q ss_pred ecceeeeeeEEeeCCCeEEEEec
Q psy1288 200 LHRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 200 ~~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
........++|.||+..++|...
T Consensus 143 Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 143 QNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred hcCceeEEEEECCCCCceEEecC
Confidence 23344578999999999999863
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=92.47 E-value=18 Score=38.98 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=99.3
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCC-CcccCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKS-KSKKHSKK 234 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~-~g~~~~~~ 234 (1012)
..+.++.+|+||..++-.... + .|.++|..+|+..... ...-+..-+.+......+.+.+..... ........
T Consensus 15 ~~i~sl~fs~~G~~litss~d-D----sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED-D----SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CceeEEEecCCCCEEEEecCC-C----eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 357889999999999863332 1 7899999988865422 222234556777777777777642100 00000001
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 314 (1012)
+..+-|-. .-...+.....+|-++.++=.+.+ ..+...|+.... ..-++.-. ... +...|...|++..
T Consensus 90 NkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D----~tvrLWDlR~~~---cqg~l~~~-~~p---i~AfDp~GLifA~ 157 (311)
T KOG1446|consen 90 NKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLD----KTVRLWDLRVKK---CQGLLNLS-GRP---IAAFDPEGLIFAL 157 (311)
T ss_pred CceEEEcC-CCCceEEEEEecCCCCeEEecccC----CeEEeeEecCCC---CceEEecC-CCc---ceeECCCCcEEEE
Confidence 11111100 000122223356666544433322 234455554332 12222211 111 1223335555555
Q ss_pred EcCceEEEEEEecCC--CceeeeecCC---ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHLHDLAS--GKHLYTFPLD---VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~--G~~~~~l~~~---~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..++. .|.+||+.. +.+-..+..+ ......+.+|+||+.|.++.+. ..++++|.
T Consensus 158 ~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----s~~~~lDA 216 (311)
T KOG1446|consen 158 ANGSE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----SFIYLLDA 216 (311)
T ss_pred ecCCC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC----CcEEEEEc
Confidence 44443 677777742 2222333322 3345678899999999988754 45888886
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.49 Score=51.21 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEE-EEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC-----------
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMY-IQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS----------- 178 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~-~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~----------- 178 (1012)
++|||+++|-.+-++ ...|| .......+..++.. .++....|||+|++|+|+....
T Consensus 246 wSPdgd~lfaAt~da---vfrlw~e~q~wt~erw~lgs---------grvqtacWspcGsfLLf~~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDA---VFRLWQENQSWTKERWILGS---------GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGE 313 (445)
T ss_pred EcCCCCEEEEecccc---eeeeehhcccceecceeccC---------CceeeeeecCCCCEEEEEEcCCceEEEEeecCC
Confidence 469999888766544 46777 33333333333322 3788899999999999988643
Q ss_pred -------CCceEEEEEEECC-----CCceeceeecceeeeeeEEeeCCCeEEEEec
Q psy1288 179 -------GSDWTSMHFKDVA-----TGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 179 -------G~~~~~L~v~dl~-----tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
++.+..+-++||. +|+ +.-.+....++|.|-|.+++.+-+
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~----~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQ----RLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCc----ccccCccceeeECCCCCEEEEEEc
Confidence 1233445555542 221 111223467899999999988754
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=92.36 E-value=7.1 Score=46.16 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=50.8
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
.+-+...+.||+|+.||=.....-.+...|++++..+=...+ +....-....+.|||||++|+-++.+
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 467889999999999997766666677899999976543322 22333345789999999998877654
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.036 Score=62.52 Aligned_cols=171 Identities=17% Similarity=0.087 Sum_probs=79.7
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc-ccchhhhhHHHHHHHHhCC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT-TKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~-~~~~~~~~~~~~fl~~~l~ 721 (1012)
..++| ++|+.|+-|..-. .....+...+... |.-++..--|+-|+...... .+.-.....+++||...
T Consensus 187 ~~p~P-~VIv~gGlDs~qe-D~~~l~~~~l~~r-------GiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~-- 255 (411)
T PF06500_consen 187 EKPYP-TVIVCGGLDSLQE-DLYRLFRDYLAPR-------GIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASR-- 255 (411)
T ss_dssp SS-EE-EEEEE--TTS-GG-GGHHHHHCCCHHC-------T-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHS--
T ss_pred CCCCC-EEEEeCCcchhHH-HHHHHHHHHHHhC-------CCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcC--
Confidence 35677 7777888775422 1122222334444 66667777788777532111 12224456777888765
Q ss_pred CCCCCCCCCCCc--cCCccccccCccceeee-ccccccccchhh------hcccccCCCCCCCCCC------CcccCCCC
Q psy1288 722 VLQRYPETPNKA--DGSENVRNQDQKLYYHY-LGTDQKDDILIA------EVLDMLKFNKFTIGYF------WESDYGSP 786 (1012)
Q Consensus 722 ~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~-~~~t~~~~~~~~------~~~~~~~~~~~~~~~~------~~~~~g~~ 786 (1012)
...|..+++ |-|.| +|.+. ++++ .++++++ +|-++++-...-...+ +...+|-.
T Consensus 256 ---p~VD~~RV~~~G~SfG-------Gy~AvRlA~l-e~~RlkavV~~Ga~vh~~ft~~~~~~~~P~my~d~LA~rlG~~ 324 (411)
T PF06500_consen 256 ---PWVDHTRVGAWGFSFG-------GYYAVRLAAL-EDPRLKAVVALGAPVHHFFTDPEWQQRVPDMYLDVLASRLGMA 324 (411)
T ss_dssp ---TTEEEEEEEEEEETHH-------HHHHHHHHHH-TTTT-SEEEEES---SCGGH-HHHHTTS-HHHHHHHHHHCT-S
T ss_pred ---CccChhheEEEEeccc-------hHHHHHHHHh-cccceeeEeeeCchHhhhhccHHHHhcCCHHHHHHHHHHhCCc
Confidence 456777887 66766 44332 1211 1222322 3444433110000000 11234544
Q ss_pred --CChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHH
Q psy1288 787 --ANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFA 838 (1012)
Q Consensus 787 --~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~ 838 (1012)
++..-...+..+|-...-- -...+..+|+|.+.+++|+-+|..++..++
T Consensus 325 ~~~~~~l~~el~~~SLk~qGl---L~~rr~~~plL~i~~~~D~v~P~eD~~lia 375 (411)
T PF06500_consen 325 AVSDESLRGELNKFSLKTQGL---LSGRRCPTPLLAINGEDDPVSPIEDSRLIA 375 (411)
T ss_dssp CE-HHHHHHHGGGGSTTTTTT---TTSS-BSS-EEEEEETT-SSS-HHHHHHHH
T ss_pred cCCHHHHHHHHHhcCcchhcc---ccCCCCCcceEEeecCCCCCCCHHHHHHHH
Confidence 2222245567778764311 001378899999999999999988876653
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.11 Score=59.95 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=40.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+||+||++|.-||+.++.++|+.+... ...+.++++.+|....
T Consensus 322 ~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~~---------~k~l~~~~ga~H~l~~ 369 (395)
T PLN02652 322 SVTVPFMVLHGTADRVTDPLASQDLYNEAASR---------HKDIKLYDGFLHDLLF 369 (395)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhcCCC---------CceEEEECCCeEEecc
Confidence 67899999999999999999999999887554 3467788999998744
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.85 Score=49.49 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHh---CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc--
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRD---FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS-- 506 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~---~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~-- 506 (1012)
.++++++-|.+|.. .|=..++..|-+ ..+.|+.....|....... .........-+++|.+.-...+++.
T Consensus 2 ~~li~~IPGNPGlv---~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV---EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCChH---HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 46888888887644 232233333332 3688999888886643222 0000122333445554433222222
Q ss_pred --CCCCCCcEEEEecChHHHHHHHHHhhCC---CceeEEEEccC
Q psy1288 507 --GYTQSSRLAIQGGSNGGLLTAACINQRP---DLFGAAIVQVG 545 (1012)
Q Consensus 507 --~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~ 545 (1012)
......++.++|||.|+++++.++.+.+ ..+..++...|
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfP 120 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFP 120 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCC
Confidence 1114578999999999999999999988 45566666666
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=92.14 E-value=3.1 Score=47.60 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=44.4
Q ss_pred ccCCC-CCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCC---CCccccchhhhhHHHHHH
Q psy1288 641 LKGKQ-YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG---GKPTTKQFPLTIPVIYFY 716 (1012)
Q Consensus 641 ~~~~~-~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~---~~~~~~~~~~~~~~~~fl 716 (1012)
+.+++ +| +|.+-|..|..|+++++.......... .......+..+++||-. |... ..+-+..+.+|+
T Consensus 333 l~~I~~~p-ll~V~ge~D~I~p~~qt~aa~~l~~~~------~s~~k~~~~~~~~GH~Gvf~G~r~--~~~i~P~i~~wl 403 (406)
T TIGR01849 333 PGAITRVA-LLTVEGENDDISGLGQTKAALRLCTGI------PEDMKRHHLQPGVGHYGVFSGSRF--REEIYPLVREFI 403 (406)
T ss_pred HHHCcccc-eEEEeccCCCcCCHHHhHHHHHHhhcC------ChhhceEeecCCCCeEEEeeChhh--hhhhchHHHHHH
Confidence 35778 99 999999999999999987665543221 02234566667889953 2211 123445566777
Q ss_pred HH
Q psy1288 717 LT 718 (1012)
Q Consensus 717 ~~ 718 (1012)
.+
T Consensus 404 ~~ 405 (406)
T TIGR01849 404 RR 405 (406)
T ss_pred Hh
Confidence 64
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.51 Score=54.98 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc---------C--------hhHHHHHHhCCeEEEEEcCCCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF---------S--------VTKIVFLRDFNGIYAIPNIRGG 473 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~---------~--------~~~~~~l~~~G~~v~~~d~RG~ 473 (1012)
..+..+.+|++..++ .....|+++++.||++.+...+. . .....|.. -..++.+|..-+
T Consensus 21 ~~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~--~an~l~iD~PvG 96 (415)
T PF00450_consen 21 NENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK--FANLLFIDQPVG 96 (415)
T ss_dssp TTTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG--TSEEEEE--STT
T ss_pred CCCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc--ccceEEEeecCc
Confidence 356788888887665 34668999999999986543111 0 11233443 467777887766
Q ss_pred CCCchhHHhhhhcCCCcchHhHHHHHHH-HHHHcCCCCCCcEEEEecChHHHHHHHHH
Q psy1288 474 GEYGERWHDGGRLLNKQNVFDDFQCAAE-YLIASGYTQSSRLAIQGGSNGGLLTAACI 530 (1012)
Q Consensus 474 g~~g~~~~~~~~~~~~~~~~~D~~a~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~ 530 (1012)
.||...-........-....+|+..++. ++...+......+.|.|.|+||..+..++
T Consensus 97 tGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a 154 (415)
T PF00450_consen 97 TGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALA 154 (415)
T ss_dssp STT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHH
T ss_pred eEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhH
Confidence 6665432222111111233455655553 44455666667899999999998765543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG2382|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.1 Score=48.91 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
.+.|.++.+||-.+... .|......+....|--|+..|.|-+|..-..- ........+|+...++.... .+
T Consensus 50 ~~~Pp~i~lHGl~GS~~--Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~-----~h~~~~ma~dv~~Fi~~v~~--~~ 120 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSKE--NWRSVAKNLSRKLGRDVYAVDVRNHGSSPKIT-----VHNYEAMAEDVKLFIDGVGG--ST 120 (315)
T ss_pred CCCCceEEecccccCCC--CHHHHHHHhcccccCceEEEecccCCCCcccc-----ccCHHHHHHHHHHHHHHccc--cc
Confidence 56788999999765442 33222222222336689999999877542110 11122223344333333222 23
Q ss_pred CCCcEEEEecChHH-HHHHHHHhhCCCceeE
Q psy1288 510 QSSRLAIQGGSNGG-LLTAACINQRPDLFGA 539 (1012)
Q Consensus 510 d~~~i~i~G~S~GG-~l~~~~~~~~p~~f~a 539 (1012)
.-.++.+.|||||| -++++.....|++...
T Consensus 121 ~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~r 151 (315)
T KOG2382|consen 121 RLDPVVLLGHSMGGVKVAMAETLKKPDLIER 151 (315)
T ss_pred ccCCceecccCcchHHHHHHHHHhcCcccce
Confidence 45678899999999 4444445556776443
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=91.70 E-value=16 Score=44.84 Aligned_cols=193 Identities=10% Similarity=0.007 Sum_probs=104.1
Q ss_pred eEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCcee-ceeecceeeeee
Q psy1288 130 SVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEY-PEVLHRLKFVSI 208 (1012)
Q Consensus 130 ~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~-~~t~~~~~~~~~ 208 (1012)
..+.+...+.+++.-+++. -...+...++|-+|++||+..+ .+.|-++++.++... .+....+....+
T Consensus 76 ~tv~~y~fps~~~~~iL~R------ftlp~r~~~v~g~g~~iaagsd-----D~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILAR------FTLPIRDLAVSGSGKMIAAGSD-----DTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred ceEEEeeCCCCCccceeee------eeccceEEEEecCCcEEEeecC-----ceeEEEEeccccchheeecccCCceeee
Confidence 4455556666666645442 1245778999999999998654 457888888765432 222233445778
Q ss_pred EEeeCCCeEEEEecCCCCCcccCCCCCceEEEEee------------cc----ccceeeeeeecCCCEEEEEECCCCCCc
Q psy1288 209 AWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT------------VN----VAPITSQYITNEGPQFVFKTNKDAPNY 272 (1012)
Q Consensus 209 ~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~------------~~----~~~i~~~~~s~dg~~l~~~tn~~~~~~ 272 (1012)
.+.|.|..|+.++-++.. +++-... .+ ...+..+.|+|+|++|++..-++
T Consensus 145 ~~~p~~~fLAvss~dG~v----------~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---- 210 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKV----------QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---- 210 (933)
T ss_pred eEcCCCCEEEEEecCceE----------EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----
Confidence 999999988887655321 1110000 00 01122456999999999987542
Q ss_pred eEEEEeCCCCcccCcEEeeccCCCc---eeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecc
Q psy1288 273 RLITIDFDNFAESNWKTLIEENKDD---VLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSG 348 (1012)
Q Consensus 273 ~L~~~dl~~~~~~~~~~l~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~ 348 (1012)
.+..++..+ |..+..-.++. .+....+ +.|.+|..+... .+|.+|+.++-+. ......|-..+|
T Consensus 211 ~Vkvy~r~~-----we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~---g~I~vWnv~t~~~----~~~~~~Vc~~aw 278 (933)
T KOG1274|consen 211 TVKVYSRKG-----WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD---GQILVWNVDTHER----HEFKRAVCCEAW 278 (933)
T ss_pred eEEEEccCC-----ceeheeecccccccceEEEEEcCCCcEEeeeccC---CcEEEEecccchh----ccccceeEEEec
Confidence 233343333 44433222221 1222333 234566554443 4688888854111 111223444556
Q ss_pred cccCcEEEEEe
Q psy1288 349 KKKYSEIFYSF 359 (1012)
Q Consensus 349 spdg~~l~~~~ 359 (1012)
-|+.+.|-+..
T Consensus 279 ~p~~n~it~~~ 289 (933)
T KOG1274|consen 279 KPNANAITLIT 289 (933)
T ss_pred CCCCCeeEEEe
Confidence 66655554443
|
|
| >KOG2183|consensus | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.92 Score=50.45 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=62.9
Q ss_pred HHHHhCCeEEEEEcCCCCCC---CchhHHhhhhc---CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHH
Q psy1288 456 VFLRDFNGIYAIPNIRGGGE---YGERWHDGGRL---LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAAC 529 (1012)
Q Consensus 456 ~~l~~~G~~v~~~d~RG~g~---~g~~~~~~~~~---~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~ 529 (1012)
....+.+-.++.+..|--|+ +|..-+..... ..-.....|+...+.+|..........+.++|+|+||.++++.
T Consensus 105 D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWf 184 (492)
T KOG2183|consen 105 DLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWF 184 (492)
T ss_pred hhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHH
Confidence 34456688888888885443 44442222111 1223457788888888887755666789999999999999999
Q ss_pred HhhCCCceeEEEEccC
Q psy1288 530 INQRPDLFGAAIVQVG 545 (1012)
Q Consensus 530 ~~~~p~~f~a~v~~~~ 545 (1012)
-.++|.+..++++.+.
T Consensus 185 RlKYPHiv~GAlAaSA 200 (492)
T KOG2183|consen 185 RLKYPHIVLGALAASA 200 (492)
T ss_pred HhcChhhhhhhhhccC
Confidence 9999998776666543
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=91.34 E-value=29 Score=40.35 Aligned_cols=193 Identities=9% Similarity=0.073 Sum_probs=99.1
Q ss_pred EeeeEEECCCC--cEEEEEEeCCCCceEEEEEEECC-CCceec---eeecceeeeeeEEeeCCCeEEEEecCCCC-Cccc
Q psy1288 158 SLGSYSFSEDG--KTLAYCLSSSGSDWTSMHFKDVA-TGKEYP---EVLHRLKFVSIAWTHDHKGVFYSNQEPKS-KSKK 230 (1012)
Q Consensus 158 ~i~~~~~SPDG--k~iAy~~~~~G~~~~~L~v~dl~-tg~~~~---~t~~~~~~~~~~WSpDG~~l~y~~~~~~~-~g~~ 230 (1012)
.++.+.+||-+ -.||.-+...++.-..++++-.. .+...+ -++-.+.-..+.|.+-|..|+.+....-+ .+.
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~- 245 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA- 245 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc-
Confidence 56778888864 45665554443333344444332 122111 12323333678999999998877532111 111
Q ss_pred CCCCCceEEEEeeccc---------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeee
Q psy1288 231 HSKKNRSSAYHLTVNV---------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDW 301 (1012)
Q Consensus 231 ~~~~~~~l~~~~~~~~---------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~ 301 (1012)
.--..+.|++....+. .+|-...|++.|..|.++..-- ...+-..|++.. ..--+++.++..+
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM--PAkvtifnlr~~----~v~df~egpRN~~-- 317 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFM--PAKVTIFNLRGK----PVFDFPEGPRNTA-- 317 (566)
T ss_pred cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecc--cceEEEEcCCCC----EeEeCCCCCccce--
Confidence 1112334444432211 2232345999999999886432 223444444321 1222233333322
Q ss_pred eEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecC
Q psy1288 302 ATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 302 ~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+....|+.|++.--.+-...+-+||+.+-+.... ......+-+.|+|||..++-...+
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~--~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK--FKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhccc--cccCCceEEEEcCCCcEEEEEecc
Confidence 2223446667666666678899999965332222 222223357899999877655544
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=91.32 E-value=16 Score=43.03 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=43.9
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc-eeeeeeEEeeCCCeEEEEe
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~ 221 (1012)
..+.+.++-|||..+...+. ..++++|+..|..++....+ ....-++||.||+.++-.+
T Consensus 13 hci~d~afkPDGsqL~lAAg------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred cchheeEECCCCceEEEecC------CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC
Confidence 46778999999999987664 27999999888876533322 2346789999999776443
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=91.13 E-value=24 Score=37.72 Aligned_cols=159 Identities=11% Similarity=0.052 Sum_probs=78.2
Q ss_pred EEEEEEECCCCceeceeecc-eeeeeeEEee-CCCeEEEEecCCCCCcccCCCCCceEEEEee--------ccccceeee
Q psy1288 183 TSMHFKDVATGKEYPEVLHR-LKFVSIAWTH-DHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT--------VNVAPITSQ 252 (1012)
Q Consensus 183 ~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSp-DG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~--------~~~~~i~~~ 252 (1012)
.+.-++|+++|+.++.-.++ +..-++..+| |++.++--.-+. ..+++-.+. .+..+|...
T Consensus 166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~----------~aklWD~R~~~c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK----------SAKLWDVRSGQCVQTFEGHESDINSV 235 (343)
T ss_pred ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccc----------ceeeeeccCcceeEeecccccccceE
Confidence 46778888888876533322 2346678888 887654433321 111111110 011233333
Q ss_pred eeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC-CceeeeeEEecCCEEEE-EEEcCceEEEEEEecCCC
Q psy1288 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK-DDVLDWATCVANDKLIL-SYIHHVKNVMHLHDLASG 330 (1012)
Q Consensus 253 ~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~-~~~~~g~~~l~~~dl~~G 330 (1012)
.+.|+|..|.--++. ..-+|| |+.... -..+..+.. .--+..+.....++|++ .+.+ ....+||.-.|
T Consensus 236 ~ffP~G~afatGSDD--~tcRly--DlRaD~---~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk~ 305 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDD--ATCRLY--DLRADQ---ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLKG 305 (343)
T ss_pred EEccCCCeeeecCCC--ceeEEE--eecCCc---EEeeeccCcccCCceeEEEcccccEEEeeecC---CceeEeecccc
Confidence 467888765554432 233444 443321 011222111 11122333333344444 4443 34667887567
Q ss_pred ceeeeecCCceEEEeecccccCcEEEEEecCCC
Q psy1288 331 KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFL 363 (1012)
Q Consensus 331 ~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~ 363 (1012)
+....|.....-|+.+..+|||.. +...|+.
T Consensus 306 e~vg~L~GHeNRvScl~~s~DG~a--v~TgSWD 336 (343)
T KOG0286|consen 306 ERVGVLAGHENRVSCLGVSPDGMA--VATGSWD 336 (343)
T ss_pred ceEEEeeccCCeeEEEEECCCCcE--EEecchh
Confidence 666666655666778888999854 3344443
|
|
| >KOG3043|consensus | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.24 Score=50.61 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=42.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+++.|+|++.|++|.-||+..--++-+.|++.-. . ...+.+|++-||||..
T Consensus 162 ~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~----~--~~~v~~f~g~~HGf~~ 212 (242)
T KOG3043|consen 162 NVKAPILFLFAELDEDVPPKDVKAWEEKLKENPA----V--GSQVKTFSGVGHGFVA 212 (242)
T ss_pred cCCCCEEEEeecccccCCHHHHHHHHHHHhcCcc----c--ceeEEEcCCccchhhh
Confidence 4449999999999999999988888888888732 1 2578899999999984
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.4 Score=43.71 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=35.5
Q ss_pred CcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 647 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 647 P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
+++|++.+..|+.+|+..+.++.++|..+ .+++..+.||+...
T Consensus 35 ~piL~l~~~~Dp~TP~~~a~~~~~~l~~s-----------~lvt~~g~gHg~~~ 77 (103)
T PF08386_consen 35 PPILVLGGTHDPVTPYEGARAMAARLPGS-----------RLVTVDGAGHGVYA 77 (103)
T ss_pred CCEEEEecCcCCCCcHHHHHHHHHHCCCc-----------eEEEEeccCcceec
Confidence 45999999999999999998888776543 57777888999753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.68 Score=48.67 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=36.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++-|+|+..|-.|+-||++.-..+|++|-. +=.+.+||.-+|...
T Consensus 257 RiK~pvL~svgL~D~vcpPstqFA~yN~l~~----------~K~i~iy~~~aHe~~ 302 (321)
T COG3458 257 RIKVPVLMSVGLMDPVCPPSTQFAAYNALTT----------SKTIEIYPYFAHEGG 302 (321)
T ss_pred hhccceEEeecccCCCCCChhhHHHhhcccC----------CceEEEeeccccccC
Confidence 8999999999999999999988888887754 224556776778654
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.8 Score=54.74 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=45.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEec
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
.+.++.+|||||||+-..-. ..|++||+.+|....--.-.....++++||.|..|+-+..
T Consensus 578 ritd~~FS~DgrWlisasmD-----~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASMD-----STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred ceeeeEeCCCCcEEEEeecC-----CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe
Confidence 67899999999999865542 3899999999987542222223477899999998876653
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=89.89 E-value=3.4 Score=45.16 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=47.4
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec---ceeeeeeEEeeCCCeEEEEec
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH---RLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~---~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
+...+...++||||..||=.++. | .-|+|+.+.+|+....-.. .....+.+|+||++.|.-+++
T Consensus 172 H~~~lAalafs~~G~llATASeK-G---TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEK-G---TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccC-c---eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 34568899999999999965554 3 4899999998876432111 235688999999998777664
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.64 Score=54.78 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=55.7
Q ss_pred cEEEEeeCCCCCCChHHHHHHHHHHHhhhccC-CCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 648 ATLLMTADHDDRVSPVHSLKFAATLQEKLRDY-PHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 648 ~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~-~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
.||+.||..|+.+++..+..++.++.+..... ..-...++|...|+.+|..+.......+.+..+++|+++-
T Consensus 355 KLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G 427 (474)
T PF07519_consen 355 KLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENG 427 (474)
T ss_pred eEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCC
Confidence 39999999999999999999999998873110 0113468899999999998876555567777777888743
|
It also includes several bacterial homologues of unknown function. |
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=89.80 E-value=38 Score=38.43 Aligned_cols=49 Identities=24% Similarity=0.131 Sum_probs=33.1
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEe
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWT 211 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WS 211 (1012)
-+-..++||||++||+.- ....|.|+|.++.+.+.. +.......+.++-
T Consensus 204 eil~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr 253 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR 253 (479)
T ss_pred eeEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhcccccccceeeeeee
Confidence 455789999999999742 234778999999987664 2222334555553
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.29 Score=51.52 Aligned_cols=45 Identities=16% Similarity=-0.075 Sum_probs=36.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+||++|++|.-||+..+.++.+.+. .++++++++.||.+-
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~ 230 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPYLDKLAP-----------HSELYIFAKAAHAPF 230 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHHHHHhCC-----------CCeEEEeCCCCCCcc
Confidence 677999999999999999887776654432 357788999999864
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >KOG2551|consensus | Back alignment and domain information |
|---|
Probab=89.66 E-value=4 Score=41.93 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
.+++| .|.|-|..|..++...+..++.....+ ..+.-.+||-.-... .....+.+|++..+
T Consensus 161 ~i~~P-SLHi~G~~D~iv~~~~s~~L~~~~~~a------------~vl~HpggH~VP~~~----~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 161 PLSTP-SLHIFGETDTIVPSERSEQLAESFKDA------------TVLEHPGGHIVPNKA----KYKEKIADFIQSFL 221 (230)
T ss_pred CCCCC-eeEEecccceeecchHHHHHHHhcCCC------------eEEecCCCccCCCch----HHHHHHHHHHHHHH
Confidence 47888 999999999999999888877765543 333345788875533 23334456666543
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=89.64 E-value=29 Score=36.30 Aligned_cols=183 Identities=10% Similarity=0.014 Sum_probs=94.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
..+..+.|--||+++. +. +|...+.|+|+..-...+.-........+.-.|.-..|+-..+.+ +.
T Consensus 84 kNVtaVgF~~dgrWMy-Tg----seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg----------~i 148 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMY-TG----SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSG----------NI 148 (311)
T ss_pred CceEEEEEeecCeEEE-ec----CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCC----------cE
Confidence 4677888999999985 33 334488999988743322222222334556666544443332211 11
Q ss_pred eEEEEe---------eccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcc-cCcEEe--eccCCCceeeeeEE
Q psy1288 237 SSAYHL---------TVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE-SNWKTL--IEENKDDVLDWATC 304 (1012)
Q Consensus 237 ~l~~~~---------~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~-~~~~~l--~~~~~~~~~~~~~~ 304 (1012)
.++-.. +.....+....+.|||..+.-..|++ ..|..++-.... .....+ +.......+.-...
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG----~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG----NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc----cEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 111110 11113344445789999888777653 466666544221 111111 12233455666666
Q ss_pred ecCCEEEEEEEcCceEEEEEEecCCC-ceeeeecCCceEEEeecccccCcEEEEEecCC
Q psy1288 305 VANDKLILSYIHHVKNVMHLHDLASG-KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 305 ~~~~~l~~~~~~~g~~~l~~~dl~~G-~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~ 362 (1012)
+++++|+....+ ..+++|+.++= +....++....-+..-.||.||..| ++.++.
T Consensus 225 Pd~k~lat~ssd---ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl-vTassd 279 (311)
T KOG0315|consen 225 PDVKYLATCSSD---KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL-VTASSD 279 (311)
T ss_pred CCCcEEEeecCC---ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE-EecCCC
Confidence 665566554432 45677777432 2222334334556677788887654 444443
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=89.62 E-value=10 Score=45.27 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=92.8
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC-----CCCce---------eceeecceeeeeeEEeeCCCeEEEEe
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV-----ATGKE---------YPEVLHRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl-----~tg~~---------~~~t~~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
...+.+.+.||||+..+-.... .++.+||. ..|.. +.+.++. ....++.||||+.|+..=
T Consensus 454 dgaIWsi~~~pD~~g~vT~saD-----ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d-dvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSAD-----KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED-DVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred ccceeeeeecCCCCceEEecCC-----cEEEEEeEEEEeccCcccceeeeeccceEEeccc-cEEEEEEcCCCcEEEEEe
Confidence 3467889999999998754322 23444432 22221 1122222 246789999999887764
Q ss_pred cCCCCCcccCCCCCceEEEEeec----cc----cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeecc
Q psy1288 222 QEPKSKSKKHSKKNRSSAYHLTV----NV----APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEE 293 (1012)
Q Consensus 222 ~~~~~~g~~~~~~~~~l~~~~~~----~~----~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~ 293 (1012)
.+. .-++||..+. +. -++..-.+|||++.++ +...+ .+.+++-+|...-- +.++++
T Consensus 528 Ldn----------TVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv-TgSAD-KnVKiWGLdFGDCH----KS~fAH 591 (888)
T KOG0306|consen 528 LDN----------TVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV-TGSAD-KNVKIWGLDFGDCH----KSFFAH 591 (888)
T ss_pred ccC----------eEEEEEecceeeeeeecccccceeEEeccCCcCeEE-eccCC-CceEEeccccchhh----hhhhcc
Confidence 331 2345554431 11 2223334788876544 33322 46788888774321 345555
Q ss_pred CCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEE
Q psy1288 294 NKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEI 355 (1012)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l 355 (1012)
. +.+..-...++ .+++++...++ .+..||-+.=+..+.+......+.-++.+|+|+.+
T Consensus 592 d-DSvm~V~F~P~-~~~FFt~gKD~--kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~v 649 (888)
T KOG0306|consen 592 D-DSVMSVQFLPK-THLFFTCGKDG--KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFV 649 (888)
T ss_pred c-CceeEEEEccc-ceeEEEecCcc--eEEeechhhhhhheeeccchheeeeeEEcCCCCeE
Confidence 4 34333333444 67777765554 45566542112223333334556677778888743
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=89.50 E-value=1.2 Score=47.22 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=45.8
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeeccee-eeeeEEeeCCCeEEEEecCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLK-FVSIAWTHDHKGVFYSNQEP 224 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~-~~~~~WSpDG~~l~y~~~~~ 224 (1012)
..+...+||-|+.+|+=.. -..++++--+.+|+.+..-.+..+ .....+++||..|+-.+.+.
T Consensus 307 kGvt~l~FSrD~SqiLS~s-----fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 307 KGVTCLSFSRDNSQILSAS-----FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred cCeeEEEEccCcchhhccc-----ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 3577899999999886322 235888889999997765444433 36689999999998776553
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.2 Score=45.06 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=26.5
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCC---CceeEEEEcc
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRP---DLFGAAIVQV 544 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~ 544 (1012)
...+.+|.++||||||.++-.++...+ +.+..+|...
T Consensus 81 ~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 81 RPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred cCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 467889999999999998877765533 3455555543
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.27 E-value=30 Score=39.83 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=105.4
Q ss_pred eEeeeEEECCC--CcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCC
Q psy1288 157 VSLGSYSFSED--GKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSK 233 (1012)
Q Consensus 157 ~~i~~~~~SPD--Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~ 233 (1012)
..+..+.|||- |.-|||-....++.-.++.++.+--+..+. -++-....-.+-|-+.|+.|++...+....+...-+
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 45778999996 566888887766656677777776555433 233333345689999999999986543211110011
Q ss_pred CCceEEEEee------c--cc-cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE
Q psy1288 234 KNRSSAYHLT------V--NV-APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC 304 (1012)
Q Consensus 234 ~~~~l~~~~~------~--~~-~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (1012)
+ ..|+.... + +. ..+-...|+|+++++.+.+... ...+...++.+. .+-.+++.....+- ..
T Consensus 254 e-snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~--pa~~s~~~lr~N----l~~~~Pe~~rNT~~--fs 324 (561)
T COG5354 254 E-SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM--PASVSVFDLRGN----LRFYFPEQKRNTIF--FS 324 (561)
T ss_pred c-ceEEEEeecccccceeccccccceeeeecccCCceeEEeccc--ccceeecccccc----eEEecCCccccccc--cc
Confidence 1 11222111 0 11 1222335999999999998422 123444444331 23333443333221 11
Q ss_pred ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCC
Q psy1288 305 VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFL 363 (1012)
Q Consensus 305 ~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~ 363 (1012)
..++++++..-.+-...+.+++.. |+.+..-.+.....+-..|+||+.-+...+.+..
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~-~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPA-GRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred CcccEEEEecCCccccceEEeccC-CceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 223566665555555667778873 5443221222112223468999987766666544
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.46 Score=54.22 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=38.2
Q ss_pred CCCCceEEEcccCCCCCCCcch-HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHS-LKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+||++|++|.-+|+..+ .+++..|.++-- .++++++++.||..-
T Consensus 290 ~i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip-------~~~l~~i~~aGH~~~ 339 (360)
T PLN02679 290 RISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLP-------NVTLYVLEGVGHCPH 339 (360)
T ss_pred hcCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCC-------ceEEEEcCCCCCCcc
Confidence 6789999999999999998754 345566655422 478999999999864
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=89.04 E-value=8.6 Score=40.41 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=48.6
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC-------CCc-eeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA-------TGK-EYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~-------tg~-~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
.+....||++|.+++++.+..=...+.|.++|++ +.+ .+.......+...+.|+|-|+.|++-..+
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 5668899999999999998764456788889886 333 22233334456889999999999887654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=88.87 E-value=24 Score=42.33 Aligned_cols=193 Identities=13% Similarity=0.046 Sum_probs=93.8
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCce-EEEcCCCCCCCCC----------ce---EeeeEEECCCCcEEEEEEeC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA-RVFLDPNNLSDDG----------TV---SLGSYSFSEDGKTLAYCLSS 177 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~-~~L~D~n~la~~g----------~~---~i~~~~~SPDGk~iAy~~~~ 177 (1012)
..||+|+|-. +. ....+-|.++..-+- +++--||.-...| +. .-...=++|||+.+.-.
T Consensus 138 ~ydGr~~fin--dk--~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~--- 210 (635)
T PRK02888 138 TYDGRYLFIN--DK--ANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDP--- 210 (635)
T ss_pred ccceeEEEEe--cC--CCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecc---
Confidence 3566655542 21 246677776654333 3333455543322 10 01134578999977221
Q ss_pred CCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc---cCCCCCc-eEEEEeeccccceeeee
Q psy1288 178 SGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK---KHSKKNR-SSAYHLTVNVAPITSQY 253 (1012)
Q Consensus 178 ~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~---~~~~~~~-~l~~~~~~~~~~i~~~~ 253 (1012)
......+-++|.++-+......-........++|||++++.+..+.+...+ .+.++.. .+.+.. ..++ .
T Consensus 211 -~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni----~~ie--a 283 (635)
T PRK02888 211 -KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI----ARIE--E 283 (635)
T ss_pred -cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch----HHHH--H
Confidence 334457888999987654322222234567999999998887643221111 1111111 111111 1111 2
Q ss_pred eecCCCEEEEEECCCCCCceEEEEeCCCCc--ccCcEEee--ccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCC
Q psy1288 254 ITNEGPQFVFKTNKDAPNYRLITIDFDNFA--ESNWKTLI--EENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLAS 329 (1012)
Q Consensus 254 ~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~ 329 (1012)
+.++|+..++. ..++..+|..+.. .......+ ...+.. ....+|++++++.-. ....+.++|+++
T Consensus 284 ~vkdGK~~~V~------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHG---V~vSPDGkylyVank--lS~tVSVIDv~k 352 (635)
T PRK02888 284 AVKAGKFKTIG------GSKVPVVDGRKAANAGSALTRYVPVPKNPHG---VNTSPDGKYFIANGK--LSPTVTVIDVRK 352 (635)
T ss_pred hhhCCCEEEEC------CCEEEEEECCccccCCcceEEEEECCCCccc---eEECCCCCEEEEeCC--CCCcEEEEEChh
Confidence 45678766651 2457777766510 00122222 222222 223456667666432 235677888754
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=88.53 E-value=11 Score=42.15 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=40.5
Q ss_pred eeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCce-eceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKE-YPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 160 ~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~-~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
..+++++||..||-.. ..-.|+|++..+-.. +.+...........|||||+.|++++.+
T Consensus 148 k~vaf~~~gs~latgg-----~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-----TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCCEeeecc-----ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC
Confidence 5789999999998643 234788888544332 2222233445789999999999999755
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.55 Score=54.12 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=41.3
Q ss_pred hHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 795 LLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+...|+...+. +|+.|+|||+|++|+.||.....+ .+.+. .+ .+.+++.++.||-.
T Consensus 285 y~~~s~~~~L~-------~I~vPtLiI~g~dDpi~p~~~~~~---~~~~~-~p------~~~l~~~~~gGH~~ 340 (388)
T PLN02511 285 YSNSSSSDSIK-------HVRVPLLCIQAANDPIAPARGIPR---EDIKA-NP------NCLLIVTPSGGHLG 340 (388)
T ss_pred HHHcCchhhhc-------cCCCCeEEEEcCCCCcCCcccCcH---hHHhc-CC------CEEEEECCCcceec
Confidence 45667788888 899999999999999999765422 11111 21 57899999999963
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=88.50 E-value=39 Score=36.24 Aligned_cols=187 Identities=13% Similarity=0.072 Sum_probs=100.4
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc-eeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK-EYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~-~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..+.||+|.|+|+= .+.+| .|.|+|.-|.. ....+.+..-.-..++||.|+.++--..+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivS-aSqDG----klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN----------- 119 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVS-ASQDG----KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN----------- 119 (343)
T ss_pred cceeeeEecCCcCeEEe-eccCC----eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc-----------
Confidence 35778999999999963 44445 68899976543 333444444345678999999777654331
Q ss_pred ceEEEEee-c----------cccce----eeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceee
Q psy1288 236 RSSAYHLT-V----------NVAPI----TSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLD 300 (1012)
Q Consensus 236 ~~l~~~~~-~----------~~~~i----~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~ 300 (1012)
.-.+|... . ...+. ....+-. ..+|+-.+ ........|++++. ....+.....+++.
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~S----GD~TCalWDie~g~---~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGS----GDMTCALWDIETGQ---QTQVFHGHTGDVMS 191 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecC----CCceEEEEEcccce---EEEEecCCcccEEE
Confidence 11112111 0 00111 1111222 23332222 23456667777765 13333333344443
Q ss_pred eeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 301 WATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 301 ~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
-...+ + ...+++-.-+ ....+||+..|.-++.++....+|..+.+-|+|..++ .-+ +-...-.||+.
T Consensus 192 lsl~p~~-~ntFvSg~cD--~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afa--tGS--DD~tcRlyDlR 259 (343)
T KOG0286|consen 192 LSLSPSD-GNTFVSGGCD--KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFA--TGS--DDATCRLYDLR 259 (343)
T ss_pred EecCCCC-CCeEEecccc--cceeeeeccCcceeEeecccccccceEEEccCCCeee--ecC--CCceeEEEeec
Confidence 32222 3 3334433333 3456778877766666766677788888889986544 322 23345566774
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.28 E-value=10 Score=41.95 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=33.3
Q ss_pred EEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 320 NVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 320 ~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
..||+++. .|...+.+......-.++.||||++.+|++-+. ...|+++++.
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~---~~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP---ANRIHRYDLD 193 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC---CCeEEEEecC
Confidence 36888887 455444444323333478899999988877533 3578888773
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=88.18 E-value=0.88 Score=52.84 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=51.8
Q ss_pred HHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC
Q psy1288 454 KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR 533 (1012)
Q Consensus 454 ~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 533 (1012)
....|.+.||.+ ..|.+|.+ .+|.... .....++++...++.+.+. ....++.++||||||+++...+..+
T Consensus 113 li~~L~~~GY~~-~~dL~g~g---YDwR~~~---~~~~~~~~Lk~lIe~~~~~--~g~~kV~LVGHSMGGlva~~fl~~~ 183 (440)
T PLN02733 113 MIEQLIKWGYKE-GKTLFGFG---YDFRQSN---RLPETMDGLKKKLETVYKA--SGGKKVNIISHSMGGLLVKCFMSLH 183 (440)
T ss_pred HHHHHHHcCCcc-CCCcccCC---CCccccc---cHHHHHHHHHHHHHHHHHH--cCCCCEEEEEECHhHHHHHHHHHHC
Confidence 456677789866 56777744 4454321 1112244555555555443 2346899999999999999888877
Q ss_pred CCc----eeEEEEccC
Q psy1288 534 PDL----FGAAIVQVG 545 (1012)
Q Consensus 534 p~~----f~a~v~~~~ 545 (1012)
|+. ++..|+.++
T Consensus 184 p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 184 SDVFEKYVNSWIAIAA 199 (440)
T ss_pred CHhHHhHhccEEEECC
Confidence 764 355555544
|
|
| >KOG2182|consensus | Back alignment and domain information |
|---|
Probab=88.09 E-value=2.8 Score=48.11 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=73.6
Q ss_pred CCcEEEEEcCCCCCCCCC-Cc-ChhHHHHHHhCCeEEEEEcCCCCCCC---chhHHhhhhcCCCcchHhHHHHHHHHHHH
Q psy1288 431 NNPCILYGYGGFAVSLQP-GF-SVTKIVFLRDFNGIYAIPNIRGGGEY---GERWHDGGRLLNKQNVFDDFQCAAEYLIA 505 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~-~~-~~~~~~~l~~~G~~v~~~d~RG~g~~---g~~~~~~~~~~~~~~~~~D~~a~~~~l~~ 505 (1012)
..|+.|++-|-......+ .. ...+..|.++.|..|+...+|=-|.. +..-...-+...-...+.|+...++.+-.
T Consensus 85 ~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~ 164 (514)
T KOG2182|consen 85 GGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNA 164 (514)
T ss_pred CCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHh
Confidence 357777775522222111 11 23467888888999999999953311 11111111112223446677777777665
Q ss_pred c-CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 506 S-GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 506 ~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+ ...++.+...+|+|+-|.|+++.-..+|++..++|+.++
T Consensus 165 k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSa 205 (514)
T KOG2182|consen 165 KFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSA 205 (514)
T ss_pred hcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccc
Confidence 5 345656899999999999999999999999988887765
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=1.1 Score=44.72 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=32.9
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.|.|||||+.|.-|.+....+.... + +..+++.++..|-|..
T Consensus 150 ~~~lvi~g~~Ddvv~l~~~l~~~~~-----~-------~~~~i~i~~a~HFF~g 191 (210)
T COG2945 150 SPGLVIQGDADDVVDLVAVLKWQES-----I-------KITVITIPGADHFFHG 191 (210)
T ss_pred CCceeEecChhhhhcHHHHHHhhcC-----C-------CCceEEecCCCceecc
Confidence 8999999999977776655554332 4 8889999999998764
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=0.53 Score=54.12 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=41.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeC-CCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIET-KAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~gH~~~ 868 (1012)
+|+.|+|||+|++|.-+|+..+.++...+...+. .+.+++.+ +.||...
T Consensus 307 ~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~-------~~~l~~i~~~~GH~~~ 356 (379)
T PRK00175 307 RIKARFLVVSFTSDWLFPPARSREIVDALLAAGA-------DVSYAEIDSPYGHDAF 356 (379)
T ss_pred cCCCCEEEEEECCccccCHHHHHHHHHHHHhcCC-------CeEEEEeCCCCCchhH
Confidence 5669999999999999999999999888887655 66777765 8999754
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.37 Score=51.90 Aligned_cols=46 Identities=15% Similarity=-0.123 Sum_probs=35.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+||++|++|..+|...+..+...+. ..+++++|+.||.+--
T Consensus 194 ~i~~P~lii~G~~D~~~~~~~~~~~~~~i~-----------~~~~~~i~~~gH~~~~ 239 (256)
T PRK10349 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWP-----------HSESYIFAKAAHAPFI 239 (256)
T ss_pred hcCCCeEEEecCCCccCCHHHHHHHHHhCC-----------CCeEEEeCCCCCCccc
Confidence 677999999999999998776654433321 3578899999998653
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=87.59 E-value=6.2 Score=44.57 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=51.3
Q ss_pred hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhh
Q psy1288 453 TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 453 ~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
....|+.++|..|++++.++-...-. ...+.....+++..+++.+.+. +.-++|-+.|.|.||.+...++..
T Consensus 130 s~V~~l~~~g~~vfvIsw~nPd~~~~------~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRNPDASLA------AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccCchHhhh------hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHh
Confidence 45678888899999999886442111 0111111123444555555554 334688899999999998888777
Q ss_pred CCCc-eeEEEEc
Q psy1288 533 RPDL-FGAAIVQ 543 (1012)
Q Consensus 533 ~p~~-f~a~v~~ 543 (1012)
.+.. ++.+...
T Consensus 202 ~~~k~I~S~T~l 213 (445)
T COG3243 202 MAAKRIKSLTLL 213 (445)
T ss_pred hhhcccccceee
Confidence 6665 5544443
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=87.46 E-value=2.9 Score=49.38 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=79.8
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcCh-hHHHHHHhCCeEEEEEcCCCCCCCc---hhHH--hhhhcCC
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSV-TKIVFLRDFNGIYAIPNIRGGGEYG---ERWH--DGGRLLN 488 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g---~~~~--~~~~~~~ 488 (1012)
.|.+.+.+|..+. + ..+...-||+...+...-.. ....-+. +||+++.-|--..+.-+ ..|. .....++
T Consensus 16 ~i~fev~LP~~WN--g--R~~~~GgGG~~G~i~~~~~~~~~~~~~~-~G~A~~~TD~Gh~~~~~~~~~~~~~n~~~~~df 90 (474)
T PF07519_consen 16 NIRFEVWLPDNWN--G--RFLQVGGGGFAGGINYADGKASMATALA-RGYATASTDSGHQGSAGSDDASFGNNPEALLDF 90 (474)
T ss_pred eEEEEEECChhhc--c--CeEEECCCeeeCcccccccccccchhhh-cCeEEEEecCCCCCCcccccccccCCHHHHHHH
Confidence 6777888888652 3 24555555554333222210 0122344 69999998853322211 1221 1112234
Q ss_pred CcchHhHHHHHHHHHHHcCC-CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGY-TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+...+.+.....+.+++.-+ ..|++-...|.|.||-..+.++.++|+.|..+|+.+|
T Consensus 91 a~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaP 148 (474)
T PF07519_consen 91 AYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAP 148 (474)
T ss_pred HhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCc
Confidence 44455666666777777744 4677888999999999999999999999999999998
|
It also includes several bacterial homologues of unknown function. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.49 Score=52.61 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=38.3
Q ss_pred CC-CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQ-YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~-~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
++ ..|+||+||++|.-||..++.+|++++. ..+++++++.||....+
T Consensus 245 ~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~~~ 292 (306)
T TIGR01249 245 KIRNIPTYIVHGRYDLCCPLQSAWALHKAFP-----------EAELKVTNNAGHSAFDP 292 (306)
T ss_pred hccCCCeEEEecCCCCCCCHHHHHHHHHhCC-----------CCEEEEECCCCCCCCCh
Confidence 45 4799999999999999999888877643 24677889999988665
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >KOG2112|consensus | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.64 Score=47.15 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=44.7
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++|.|..||+.|+-||..-+++..+.|+..++ ++++..|++-+|....
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~-------~~~f~~y~g~~h~~~~ 191 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGV-------RVTFKPYPGLGHSTSP 191 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCC-------ceeeeecCCccccccH
Confidence 59999999999999999999999999999988 8999999999997643
|
|
| >KOG3253|consensus | Back alignment and domain information |
|---|
Probab=87.28 E-value=6.4 Score=46.03 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=42.1
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCc
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 871 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 871 (1012)
++.|+|++.|.+|.+|++..-|++-..+|+ ++++++.-+.+|.+.-++
T Consensus 303 mk~PVLFV~Gsnd~mcspn~ME~vreKMqA----------~~elhVI~~adhsmaipk 350 (784)
T KOG3253|consen 303 MKQPVLFVIGSNDHMCSPNSMEEVREKMQA----------EVELHVIGGADHSMAIPK 350 (784)
T ss_pred cCCceEEEecCCcccCCHHHHHHHHHHhhc----------cceEEEecCCCccccCCc
Confidence 339999999999999999999999888887 888999999999987443
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=87.22 E-value=7.5 Score=44.04 Aligned_cols=182 Identities=8% Similarity=0.013 Sum_probs=88.9
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC-Cceeceeec-ceeeeeeEEeeCCCeEEEEecCCCCCcc-cC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT-GKEYPEVLH-RLKFVSIAWTHDHKGVFYSNQEPKSKSK-KH 231 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t-g~~~~~t~~-~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~ 231 (1012)
+...+++.+|.|-.-.|..+..-+ ..|+|+++-+ ++.++.-.+ ......++|+.+|+.|+-.+-+....-. ++
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD----~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMD----GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred CccccchhhhccceeeEEEecCCC----ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence 345788999999444444444333 4788888765 444432222 2335788999999988766644210000 00
Q ss_pred CCCCceEEEEeecccccee-eeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCc--eeeeeEEecCC
Q psy1288 232 SKKNRSSAYHLTVNVAPIT-SQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDD--VLDWATCVAND 308 (1012)
Q Consensus 232 ~~~~~~l~~~~~~~~~~i~-~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 308 (1012)
.+. ...-++. ..+. ..-+.||+..+++..- .+.+|...|+.+++ ++.+-+.. .+..+...+++
T Consensus 289 TG~-~~~~f~~----~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs~k------vvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 289 TGQ-VLSRFHL----DKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRSGK------VVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred cce-EEEEEec----CCCceeeecCCCCCcEEEEec---CCCcEEEEeccchH------HHHHHHhhhhheeeeEEccCC
Confidence 000 0000110 1111 1236788866666542 45689999988765 22221111 12223333434
Q ss_pred EEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEE
Q psy1288 309 KLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIF 356 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~ 356 (1012)
.-+++..++. .+.+|+...+-....+..+ ..+.-.+...|.++.++
T Consensus 355 ~rFissSDdk--s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 355 RRFISSSDDK--SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred ceEeeeccCc--cEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 4455555554 4555555333222222222 11222334566666533
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=87.11 E-value=0.6 Score=52.59 Aligned_cols=47 Identities=13% Similarity=-0.025 Sum_probs=39.2
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
..|+||+||++|.-|++..+.+++.++... ...++++++.+|.+...
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~---------~~~l~~~~g~~H~i~~E 316 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGTVSFYNKLSIS---------NKELHTLEDMDHVITIE 316 (332)
T ss_pred CCCEEEEEeCCCCccCHHHHHHHHHhccCC---------CcEEEEECCCCCCCccC
Confidence 489999999999999999988887765543 45778899999998754
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=87.01 E-value=3 Score=45.43 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=31.7
Q ss_pred CC-CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQ-YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~-~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++ ..|+|+|.|++|.-+|+...++|.+.+. ..+++..+ .||..
T Consensus 208 ~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~-----------~~~~~~l~-~gH~p 251 (273)
T PLN02211 208 DIDKVPRVYIKTLHDHVVKPEQQEAMIKRWP-----------PSQVYELE-SDHSP 251 (273)
T ss_pred ccCccceEEEEeCCCCCCCHHHHHHHHHhCC-----------ccEEEEEC-CCCCc
Confidence 44 5799999999999999988888765432 12445554 89974
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=86.98 E-value=1.8 Score=48.57 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=49.8
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
+...+.++++||||+++|+....+ .+.+++..+++..+.-.....+..++|+-+|..|.-...+
T Consensus 451 H~~pVysvafS~~g~ylAsGs~dg-----~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 451 HQEPVYSVAFSPNGRYLASGSLDG-----CVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCceEEEEecCCCcEEEecCCCC-----eeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 455788999999999999865432 6888999999987655555556889999999888766543
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.56 Score=51.25 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=46.8
Q ss_pred hHcCCCCCCCCCCCCCCCCCC-CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 795 LLGYSPLHNIQGPNELKGKQY-PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~~~-~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+....+...+. ++. .|+|++||.+|..||..+++.+|.+.+.. |...+++++.+|....
T Consensus 218 ~~~~d~~~~~~-------~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~---------~~~~~~~~~~~H~~~~ 277 (299)
T COG1073 218 LLLLDPFDDAE-------KISPRPVLLVHGERDEVVPLRDAEDLYEAARER---------PKKLLFVPGGGHIDLY 277 (299)
T ss_pred hccCcchhhHh-------hcCCcceEEEecCCCcccchhhhHHHHhhhccC---------CceEEEecCCcccccc
Confidence 33444445555 555 69999999999999999999999999886 6677888888898764
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.72 E-value=0.42 Score=56.21 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=36.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+++.|+||++|++|.-+|+..+..|.+.+. -+++++.++.||..
T Consensus 416 ~I~vPtLII~Ge~D~ivP~~~~~~la~~iP-----------~a~l~vI~~aGH~~ 459 (481)
T PLN03087 416 QLKCDVAIFHGGDDELIPVECSYAVKAKVP-----------RARVKVIDDKDHIT 459 (481)
T ss_pred hCCCCEEEEEECCCCCCCHHHHHHHHHhCC-----------CCEEEEeCCCCCcc
Confidence 577999999999999999999888755542 35788999999973
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.68 E-value=66 Score=36.93 Aligned_cols=203 Identities=14% Similarity=0.102 Sum_probs=104.7
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCC-CCCcc-cCCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEP-KSKSK-KHSKKN 235 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~-~~~g~-~~~~~~ 235 (1012)
.-....++++|+++.-.... ...+.++|+++.........+.....++|+||++.+|...... ..... .+...+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~----~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGD----SNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cccceeeCCCCCeEEEecCC----CCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 34467889999877544322 2378999977766544222222346789999999887765421 10000 111111
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcE--EeeccCCCceeeeeEEecCCEEEEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWK--TLIEENKDDVLDWATCVANDKLILS 313 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~l~~~ 313 (1012)
. +....+.+..+ ....++|+|..+|+.. .....|..++.......... ..+..... ........++..+++.
T Consensus 151 ~-~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 151 K-VTATIPVGNTP-TGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVA 224 (381)
T ss_pred e-EEEEEecCCCc-ceEEECCCCCeEEEEe---cCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEE
Confidence 1 11112222112 2235889999888876 23556778876543310000 01111111 1111222344566666
Q ss_pred EEcCceEEEEEEecCCCceeee-ecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 314 YIHHVKNVMHLHDLASGKHLYT-FPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 314 ~~~~g~~~l~~~dl~~G~~~~~-l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+....+..++..++..... .+...........+|+|+.+++..+. ...++.+|.
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~ 282 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDG 282 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeC
Confidence 5544345778888866543221 12211122245678999887766544 567888887
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=86.56 E-value=10 Score=40.59 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=31.9
Q ss_pred CceEEEcccCCC--------CCCCc--chHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 816 PATLLMTADHDD--------RVSPV--HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 816 ~p~l~~~g~~D~--------rv~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
-|+||+-..-.. .|-+. .-.+||.+++. |..+++-++.||-
T Consensus 155 ~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~----------p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 155 MPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP----------PSWHFVAKDYGHM 205 (259)
T ss_pred CCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC----------CEEEEEeCCCCch
Confidence 899999877773 44443 55789998855 8889999999997
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.44 E-value=0.72 Score=52.98 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=41.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCC-CCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETK-AGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~gH~~~ 868 (1012)
+++.|+|||+|++|..+|+.++.++.+.++..+. .+.+++.++ .||-..
T Consensus 321 ~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~-------~a~l~~I~s~~GH~~~ 370 (389)
T PRK06765 321 NIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGK-------YAEVYEIESINGHMAG 370 (389)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCC-------CeEEEEECCCCCcchh
Confidence 5569999999999999999999999888876544 678888875 899753
|
|
| >KOG1282|consensus | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.9 Score=49.93 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=69.0
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChh----------------HHHHHHhCCeEEEEEcCCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT----------------KIVFLRDFNGIYAIPNIRGG 473 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~----------------~~~~l~~~G~~v~~~d~RG~ 473 (1012)
...|+.+.++.+.... .....|+||++-||++.+...++..+ -..|-. -..++..|.+-+
T Consensus 53 ~~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk--~aNiLfLd~PvG 128 (454)
T KOG1282|consen 53 ESEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNK--EANILFLDQPVG 128 (454)
T ss_pred CCCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccc--cccEEEEecCCc
Confidence 3468889888886653 34567999999999987643222100 012221 234555566655
Q ss_pred CCCchhHHhhhhcCCCcchHhHHHHH-HHHHHHcCCCCCCcEEEEecChHHHHHHHHH
Q psy1288 474 GEYGERWHDGGRLLNKQNVFDDFQCA-AEYLIASGYTQSSRLAIQGGSNGGLLTAACI 530 (1012)
Q Consensus 474 g~~g~~~~~~~~~~~~~~~~~D~~a~-~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~ 530 (1012)
.||.-.-........-..+..|...+ .+|+.+.+.-....+.|.|.|++|.-+-.++
T Consensus 129 vGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La 186 (454)
T KOG1282|consen 129 VGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALA 186 (454)
T ss_pred CCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHH
Confidence 55533211111111222334565544 5788888887888999999999997665444
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=86.18 E-value=54 Score=35.49 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=38.6
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEE
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYS 220 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~ 220 (1012)
-..+.+.+||+||+.|+-++ ++ ..|-++|+..|..+....-.....+..|.|-.+..+..
T Consensus 65 ~~pi~sl~WS~dgr~LltsS-~D----~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va 124 (405)
T KOG1273|consen 65 VRPITSLCWSRDGRKLLTSS-RD----WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVA 124 (405)
T ss_pred ccceeEEEecCCCCEeeeec-CC----ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEE
Confidence 34688999999999987443 22 36889999888865432222234556777755444443
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=85.74 E-value=37 Score=38.75 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=42.5
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEe
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
..+.+..||++|..++=. +. ...|.++|++||+.+.--..+.-..-+.+.||+..++++.
T Consensus 259 k~Vrd~~~s~~g~~fLS~-sf----D~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSA-SF----DRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred hhhhhhhccccCCeeeee-ec----ceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe
Confidence 467799999999987633 22 2479999999999765222222246678899997777765
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=85.58 E-value=11 Score=42.90 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=43.1
Q ss_pred eeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 160 ~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
....+.|-| .||..... | ..+|+|.++....++...+...+-+++||||..|+..+.+
T Consensus 411 ~~~~fhpsg-~va~Gt~~-G----~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTAT-G----RWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred eEeeccCcc-eEEEeecc-c----eEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence 456788888 66665443 3 6889999987766555555556889999999999887765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=85.50 E-value=44 Score=43.07 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=32.0
Q ss_pred CEEEEEEEcCceEEEEEEecCCCceeeeecCC----ceEEEeecccccCcEEEEEecC
Q psy1288 308 DKLILSYIHHVKNVMHLHDLASGKHLYTFPLD----VGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 308 ~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~----~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+.|....+......+..+.. +|-....++++ ...+..+.|+.|++.|++....
T Consensus 269 ~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 269 NLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred CEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 33443444444556666665 45444444433 3456788999999988887743
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=85.03 E-value=3.1 Score=43.48 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=42.9
Q ss_pred EEEEcCCCCCCCCCCcChhHHHHHHhCCeE---EEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 435 ILYGYGGFAVSLQPGFSVTKIVFLRDFNGI---YAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 435 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~---v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
||++||-.. .....|... ...|.++||. ++..++-..... ....... ........+.+.++.+.+. +..
T Consensus 4 VVlVHG~~~-~~~~~w~~~-~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa 75 (219)
T PF01674_consen 4 VVLVHGTGG-NAYSNWSTL-APYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA 75 (219)
T ss_dssp EEEE--TTT-TTCGGCCHH-HHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH--HT-
T ss_pred EEEECCCCc-chhhCHHHH-HHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh--hCC
Confidence 667899653 223456554 3455667998 799888443321 1111111 1111223344444444433 445
Q ss_pred CcEEEEecChHHHHHHHHHhh
Q psy1288 512 SRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
+|-|+|||+||.++-..+..
T Consensus 76 -kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp --EEEEEETCHHHHHHHHHHH
T ss_pred -EEEEEEcCCcCHHHHHHHHH
Confidence 89999999999988777654
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG3967|consensus | Back alignment and domain information |
|---|
Probab=84.99 E-value=11 Score=38.31 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=41.7
Q ss_pred hCCeEEEEEcCCCCCCCchhHHhhhh--cCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC
Q psy1288 460 DFNGIYAIPNIRGGGEYGERWHDGGR--LLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD 535 (1012)
Q Consensus 460 ~~G~~v~~~d~RG~g~~g~~~~~~~~--~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~ 535 (1012)
..||-|++.|.--. +.+++.-. ........+-+.-...+++. ...+..+++..||+||++++.++.+.|+
T Consensus 142 ~~Gygviv~N~N~~----~kfye~k~np~kyirt~veh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 142 AEGYGVIVLNPNRE----RKFYEKKRNPQKYIRTPVEHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HcCCcEEEeCCchh----hhhhhcccCcchhccchHHHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCC
Confidence 35888888775421 22333211 11112233333333333333 3567889999999999999999998876
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=84.77 E-value=21 Score=41.39 Aligned_cols=96 Identities=8% Similarity=0.039 Sum_probs=58.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCce
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRS 237 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~ 237 (1012)
-+.+++|||+|+-.+...-.- -..+-++|+++.-. -+..++. -..+-|+|-|+.|++..-.. -.| +.
T Consensus 272 PVhdv~W~~s~~EF~VvyGfM---PAkvtifnlr~~~v-~df~egp-RN~~~fnp~g~ii~lAGFGN-L~G-------~m 338 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFM---PAKVTIFNLRGKPV-FDFPEGP-RNTAFFNPHGNIILLAGFGN-LPG-------DM 338 (566)
T ss_pred CceEEEECCCCCEEEEEEecc---cceEEEEcCCCCEe-EeCCCCC-ccceEECCCCCEEEEeecCC-CCC-------ce
Confidence 467899999999887665332 23566778765433 2222232 25689999999888876431 111 12
Q ss_pred EEEEeec-------cccceeeeeeecCCCEEEEEEC
Q psy1288 238 SAYHLTV-------NVAPITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 238 l~~~~~~-------~~~~i~~~~~s~dg~~l~~~tn 266 (1012)
-+++... +..+-.+..|+|||.+|+..+.
T Consensus 339 EvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred EEEeccchhhccccccCCceEEEEcCCCcEEEEEec
Confidence 2233221 1123345679999998887764
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=84.66 E-value=2.6 Score=49.11 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=64.1
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc---------------------ChhHHHHHHhCCeEEEEEcC
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF---------------------SVTKIVFLRDFNGIYAIPNI 470 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~---------------------~~~~~~~l~~~G~~v~~~d~ 470 (1012)
.+..+.++.+.... .....|+|+++-||++.+...++ ...-..|.. -..++.+|.
T Consensus 48 ~~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~anllfiDq 123 (433)
T PLN03016 48 ENVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK--MANIIFLDQ 123 (433)
T ss_pred CCeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh--cCcEEEecC
Confidence 35667777776543 34578999999999875532110 001123433 356677787
Q ss_pred CCCCCCchhHHhhhhcCCCcchHhHHHHHH-HHHHHcCCCCCCcEEEEecChHHHHHHHHHh
Q psy1288 471 RGGGEYGERWHDGGRLLNKQNVFDDFQCAA-EYLIASGYTQSSRLAIQGGSNGGLLTAACIN 531 (1012)
Q Consensus 471 RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~-~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 531 (1012)
.-+.||...-.... ...-....+|+...+ .|+...+......+.|.|.|+||..+..++.
T Consensus 124 PvGtGfSy~~~~~~-~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~ 184 (433)
T PLN03016 124 PVGSGFSYSKTPID-KTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQ 184 (433)
T ss_pred CCCCCccCCCCCCC-ccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHH
Confidence 66666643211111 000011224555444 4555555555678999999999986655543
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=84.46 E-value=3 Score=45.54 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=30.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHH------HHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFA------ATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+|+++|+.|+-.+ ++. +..+++-. ...+.++++++.||-++.
T Consensus 205 ~~~~P~ll~~g~~D~~~~-----~~~~~~~~~~~~~~~l~-----~~~v~~~~~~~~~H~l~~ 257 (274)
T TIGR03100 205 RFQGPVLFILSGNDLTAQ-----EFADSVLGEPAWRGALE-----DPGIERVEIDGADHTFSD 257 (274)
T ss_pred hcCCcEEEEEcCcchhHH-----HHHHHhccChhhHHHhh-----cCCeEEEecCCCCccccc
Confidence 456899999999998642 232 22222110 015789999999996643
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=84.43 E-value=2.2 Score=44.80 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC----CceeEEEEccC
Q psy1288 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP----DLFGAAIVQVG 545 (1012)
Q Consensus 496 ~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----~~f~a~v~~~~ 545 (1012)
...|++|+.......+..|.+.|||.||.++..++...+ +++..+....+
T Consensus 68 q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 68 QKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 345566665543333456999999999999988877643 34555555444
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=84.33 E-value=0.78 Score=50.68 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=42.7
Q ss_pred CCCCCceEEEcccCCCCCC-CcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCchh
Q psy1288 812 GKQYPATLLMTADHDDRVS-PVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873 (1012)
Q Consensus 812 ~~~~~p~l~~~g~~D~rv~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 873 (1012)
.++..|+||+||+.|.-|+ ...+.++++++... -+.++++++..|.+......
T Consensus 225 ~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~---------~~~~~~~~g~~He~~~E~~~ 278 (298)
T COG2267 225 PAIALPVLLLQGGDDRVVDNVEGLARFFERAGSP---------DKELKVIPGAYHELLNEPDR 278 (298)
T ss_pred ccccCCEEEEecCCCccccCcHHHHHHHHhcCCC---------CceEEecCCcchhhhcCcch
Confidence 3788999999999999999 77777777776654 36899999999997644344
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=84.28 E-value=14 Score=40.01 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=59.9
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC-CCCceec--eeecc------eeeeeeEEeeC-CCeEEEEecCCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV-ATGKEYP--EVLHR------LKFVSIAWTHD-HKGVFYSNQEPKSK 227 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl-~tg~~~~--~t~~~------~~~~~~~WSpD-G~~l~y~~~~~~~~ 227 (1012)
..-+++|||||.+|.-.- ...|+++|+ ..|..-+ .+... .-.+.++++|- .+.++.-+-. ...
T Consensus 160 aAhsL~Fs~DGeqlfaGy------krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~ 232 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGY------KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRV 232 (406)
T ss_pred hheeEEecCCCCeEeecc------cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccc-cee
Confidence 345789999999986432 247999998 4554221 11111 12466788884 4445443311 101
Q ss_pred cccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCC
Q psy1288 228 SKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNF 282 (1012)
Q Consensus 228 g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~ 282 (1012)
|. -.......++..-....+|+...|.+||.+|+.-+..+ -+|...|+...
T Consensus 233 gi-y~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~---dkIl~WDiR~~ 283 (406)
T KOG2919|consen 233 GI-YNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD---DKILCWDIRYS 283 (406)
T ss_pred ee-EecCCCCceeeecccCCCeeeEEeccCcCeecccccCC---CeEEEEeehhc
Confidence 11 00000011111111114566666999999988876543 46777787653
|
|
| >KOG1515|consensus | Back alignment and domain information |
|---|
Probab=84.21 E-value=1 Score=50.26 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=45.8
Q ss_pred CCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 809 ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 809 ~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...|.--+|+||+.++.|.-. -++..++++|++.|+ +++++.+++++||+-
T Consensus 262 d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lkk~Gv-------~v~~~~~e~~~H~~~ 312 (336)
T KOG1515|consen 262 DLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLKKAGV-------EVTLIHYEDGFHGFH 312 (336)
T ss_pred CccccCCCceEEEEeCchhhh--hhhHHHHHHHHHcCC-------eEEEEEECCCeeEEE
Confidence 456788899999999999877 799999999999999 999889999999975
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=83.96 E-value=0.8 Score=49.28 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+|+++|++|.-||+..+++|.+.+. ..+++++++.||.+.
T Consensus 191 ~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~-----------~a~~~~i~~~GH~~~ 235 (255)
T PLN02965 191 AEKVPRVYIKTAKDNLFDPVRQDVMVENWP-----------PAQTYVLEDSDHSAF 235 (255)
T ss_pred cCCCCEEEEEcCCCCCCCHHHHHHHHHhCC-----------cceEEEecCCCCchh
Confidence 588999999999999999977766653322 246788999999865
|
|
| >KOG4388|consensus | Back alignment and domain information |
|---|
Probab=83.82 E-value=1.9 Score=49.74 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCC-CCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC-
Q psy1288 431 NNPCILYGYGGFA-VSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY- 508 (1012)
Q Consensus 431 ~~P~vv~~hGg~~-~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~- 508 (1012)
..-+|+++|||.- .+.......-..+|....|.-++.+||.-.. .....+..+.+.-+--|++.+..
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAP-----------EaPFPRaleEv~fAYcW~inn~al 463 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAP-----------EAPFPRALEEVFFAYCWAINNCAL 463 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCC-----------CCCCCcHHHHHHHHHHHHhcCHHH
Confidence 3458999999843 3334444455567877789999999986433 33445556777777788888732
Q ss_pred --CCCCcEEEEecChHHHHHHHHH
Q psy1288 509 --TQSSRLAIQGGSNGGLLTAACI 530 (1012)
Q Consensus 509 --~d~~~i~i~G~S~GG~l~~~~~ 530 (1012)
...+||++.|.|+||.+...++
T Consensus 464 lG~TgEriv~aGDSAGgNL~~~Va 487 (880)
T KOG4388|consen 464 LGSTGERIVLAGDSAGGNLCFTVA 487 (880)
T ss_pred hCcccceEEEeccCCCcceeehhH
Confidence 3568999999999998765444
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.60 E-value=20 Score=35.35 Aligned_cols=37 Identities=16% Similarity=-0.043 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR 533 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 533 (1012)
...+-++-++... .+ ..++|.|.|.||+.+-++..+.
T Consensus 44 ~a~~ele~~i~~~-~~-~~p~ivGssLGGY~At~l~~~~ 80 (191)
T COG3150 44 QALKELEKAVQEL-GD-ESPLIVGSSLGGYYATWLGFLC 80 (191)
T ss_pred HHHHHHHHHHHHc-CC-CCceEEeecchHHHHHHHHHHh
Confidence 3344444455442 22 2389999999999999888764
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=83.30 E-value=8.9 Score=43.59 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=87.5
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec---eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP---EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~---~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
.+.+..++|||+.|.. |.+..+|-||||++-..+- ++...-.-...+-|||.+ ++|..... .
T Consensus 467 yiRSckL~pdgrtLiv-----GGeastlsiWDLAapTprikaeltssapaCyALa~spDak-vcFsccsd---------G 531 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIV-----GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSD---------G 531 (705)
T ss_pred ceeeeEecCCCceEEe-----ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccC---------C
Confidence 5788999999999976 5567899999998765431 222111124567789976 66665321 1
Q ss_pred CceEEEEee--------ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCC-ceeeeeEEe
Q psy1288 235 NRSSAYHLT--------VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKD-DVLDWATCV 305 (1012)
Q Consensus 235 ~~~l~~~~~--------~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~-~~~~~~~~~ 305 (1012)
+..++-... .-..+.....+++||.+|+-- +...-+-..|+..+ +.+..+.-. .++.--..+
T Consensus 532 nI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG----GlDntvRcWDlreg-----rqlqqhdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 532 NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG----GLDNTVRCWDLREG-----RQLQQHDFSSQIFSLGYCP 602 (705)
T ss_pred cEEEEEcccceeeecccCCCCCceeEEecCCCceeecC----CCccceeehhhhhh-----hhhhhhhhhhhheecccCC
Confidence 111111000 000223333466777666542 22333444555433 222222211 112211233
Q ss_pred cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEE
Q psy1288 306 ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEI 355 (1012)
Q Consensus 306 ~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l 355 (1012)
.++.+.+.... +++++... ++..+..+.....-|-.+-|++-|+.+
T Consensus 603 ~~dWlavGMen---s~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 603 TGDWLAVGMEN---SNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred Cccceeeeccc---CcEEEEec-CCccceeecccccEEEEEEecccCcee
Confidence 44555554432 45566665 555556666655556567777777653
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=82.96 E-value=27 Score=36.23 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=36.4
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCc----eEEEEEEECCCCceeceeeccee-eeeeEEeeCCCeEEEEe
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSD----WTSMHFKDVATGKEYPEVLHRLK-FVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~----~~~L~v~dl~tg~~~~~t~~~~~-~~~~~WSpDG~~l~y~~ 221 (1012)
-+..+..++||||+.+=+....|.+ ...||.+-+ +++.... ..... -.++.|+-|-|.+||+.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i-~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELI-WNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceee-ehhccCCccccccccCcEEEEEc
Confidence 4566788999999965555544432 125555443 3433211 11111 14578998888888874
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=82.76 E-value=0.89 Score=51.33 Aligned_cols=44 Identities=20% Similarity=0.103 Sum_probs=34.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCC-CCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETK-AGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~gH~~ 867 (1012)
+|+.|+|||+|++|.-+|+..+..+.+.+. .+++++.++ .||-.
T Consensus 273 ~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip-----------~a~l~~i~~~~GH~~ 317 (339)
T PRK07581 273 SITAKTFVMPISTDLYFPPEDCEAEAALIP-----------NAELRPIESIWGHLA 317 (339)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCC-----------CCeEEEeCCCCCccc
Confidence 455999999999999999988877755442 246778898 89954
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=82.62 E-value=15 Score=39.44 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR 533 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 533 (1012)
-+..++.+|.++-. -.++-++||||||......+..+
T Consensus 88 wl~~vl~~L~~~Y~--~~~~N~VGHSmGg~~~~~yl~~~ 124 (255)
T PF06028_consen 88 WLKKVLKYLKKKYH--FKKFNLVGHSMGGLSWTYYLENY 124 (255)
T ss_dssp HHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC--CCEEeEEEECccHHHHHHHHHHh
Confidence 45556677766633 46899999999999988877663
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.7 Score=44.74 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+|+++|++|..+|.... +.+++..- .++++++|+.||..
T Consensus 174 ~~~~pvl~i~g~~D~~~~~~~~----~~~~~~~~-------~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 174 RIKVPVLVIHGEDDPIVPPESA----EELADKLP-------NAELVVIPGAGHFL 217 (228)
T ss_dssp GSSSEEEEEEETTSSSSHHHHH----HHHHHHST-------TEEEEEETTSSSTH
T ss_pred ccCCCeEEeecCCCCCCCHHHH----HHHHHHCC-------CCEEEEECCCCCcc
Confidence 5569999999999999994444 44444333 57899999999974
|
... |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.1 Score=49.71 Aligned_cols=47 Identities=13% Similarity=-0.084 Sum_probs=34.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|||+|++|+-||... .+|...+... . -+.++++++.||...
T Consensus 237 ~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~-------~~~~~~i~~~gH~~~ 283 (302)
T PRK00870 237 RWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-A-------GQPHPTIKGAGHFLQ 283 (302)
T ss_pred cCCCceEEEecCCCCcccCch-HHHHhhcccc-c-------ccceeeecCCCccch
Confidence 678999999999999999744 6655544421 0 124668899999864
|
|
| >KOG2984|consensus | Back alignment and domain information |
|---|
Probab=82.28 E-value=1.1 Score=44.77 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=34.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+||+||+.|+.|+-.+..=+ ..++. -.++.++|+.+|-+-
T Consensus 214 ~vkcPtli~hG~kDp~~~~~hv~fi-~~~~~----------~a~~~~~peGkHn~h 258 (277)
T KOG2984|consen 214 QVKCPTLIMHGGKDPFCGDPHVCFI-PVLKS----------LAKVEIHPEGKHNFH 258 (277)
T ss_pred cccCCeeEeeCCcCCCCCCCCccch-hhhcc----------cceEEEccCCCccee
Confidence 5779999999999999998877644 33322 246778899999764
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=1.1 Score=51.11 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=34.6
Q ss_pred CCCCceEEEcccCCCCCCCcch--HHHHHHHHHHhcCCCCCCCCEEEEEeCCC----CCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHS--LKFAATLQEKLRDYPHQTNPLLIRIETKA----GHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----gH~~~ 868 (1012)
+|+.|+|||+|++|..+|+.++ +++...+. ..+++++|+. ||...
T Consensus 290 ~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip-----------~a~l~~i~~a~~~~GH~~~ 340 (360)
T PRK06489 290 KIKAPVLAINSADDERNPPETGVMEAALKRVK-----------HGRLVLIPASPETRGHGTT 340 (360)
T ss_pred hCCCCEEEEecCCCcccChhhHHHHHHHHhCc-----------CCeEEEECCCCCCCCcccc
Confidence 6789999999999999998876 45533331 3478888986 99764
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=82.21 E-value=3.6 Score=47.90 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc---------C------------hhHHHHHHhCCeEEEEEc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF---------S------------VTKIVFLRDFNGIYAIPN 469 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~---------~------------~~~~~~l~~~G~~v~~~d 469 (1012)
..|..+.++.+.... .....|+++++-||++.+...+. . ..-..|.. -..++.+|
T Consensus 49 ~~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~anllfiD 124 (437)
T PLN02209 49 EENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK--TANIIFLD 124 (437)
T ss_pred CCCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh--cCcEEEec
Confidence 346667777765443 24568999999999876543211 0 01113333 24667778
Q ss_pred CCCCCCCchhHHhhhhcCCCcchHhHHHHHHH-HHHHcCCCCCCcEEEEecChHHHHHHHHH
Q psy1288 470 IRGGGEYGERWHDGGRLLNKQNVFDDFQCAAE-YLIASGYTQSSRLAIQGGSNGGLLTAACI 530 (1012)
Q Consensus 470 ~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~-~l~~~~~~d~~~i~i~G~S~GG~l~~~~~ 530 (1012)
..-+.||...-..... ..-....+|+...+. |+...+......+.|.|.|+||..+..++
T Consensus 125 qPvGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a 185 (437)
T PLN02209 125 QPVGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALV 185 (437)
T ss_pred CCCCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHH
Confidence 7766666432111111 111123355655553 44444555556899999999997665544
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=82.11 E-value=3.9 Score=43.37 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=49.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCC--eEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFN--GIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G--~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~ 507 (1012)
....++|++||-... ..... ....++....| ..++.+.....+..-. +..+. ........++...+..|...
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~-~r~aql~~~~~~~~~~i~FsWPS~g~~~~-Y~~d~--~~a~~s~~~l~~~L~~L~~~- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDAL-RRAAQLAHDLGFPGVVILFSWPSDGSLLG-YFYDR--ESARFSGPALARFLRDLARA- 89 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHH-HHHHHHHHHhCCCceEEEEEcCCCCChhh-hhhhh--hhHHHHHHHHHHHHHHHHhc-
Confidence 345799999995321 11110 11222333333 2677777776554211 11110 01111223344444444443
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhh
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
....+|-|++||||+.+++.++..
T Consensus 90 -~~~~~I~ilaHSMG~rv~~~aL~~ 113 (233)
T PF05990_consen 90 -PGIKRIHILAHSMGNRVLLEALRQ 113 (233)
T ss_pred -cCCceEEEEEeCchHHHHHHHHHH
Confidence 346799999999999998877654
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=82.06 E-value=25 Score=39.03 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=47.4
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
+..+++.++|.|--.-+++++.- .+.+.+||+.+|+.+-......-..+++|+-||+.|+-+..+
T Consensus 130 H~rrVg~V~wHPtA~NVLlsag~----Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPNVLLSAGS----DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred cceeEEEEeecccchhhHhhccC----CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc
Confidence 45688999999988887776542 248999999999975322223335789999999988766544
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=82.01 E-value=22 Score=38.48 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=30.2
Q ss_pred EEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 324 LHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 324 ~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
++.-.++.....+-...+.|..+.|-+||+.++. +.+.-..|..+|+.
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfs---GaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFS---GARKDDKILCWDIR 281 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecc---cccCCCeEEEEeeh
Confidence 3333334444444433677888999999998763 33444567788874
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=81.89 E-value=1.4 Score=50.14 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=39.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEE-eCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRI-ETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~gH~~~ 868 (1012)
+|+.|+|||+|++|.-+|+..+++|.+.+..... -++|+. .++.||...
T Consensus 286 ~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~-------~v~~~~i~~~~GH~~~ 335 (351)
T TIGR01392 286 RIKAPFLVVSITSDWLFPPAESRELAKALPAAGL-------RVTYVEIESPYGHDAF 335 (351)
T ss_pred hCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCC-------ceEEEEeCCCCCcchh
Confidence 5669999999999999999999999998876533 444544 468999754
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=81.68 E-value=1.8 Score=47.85 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=42.3
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eee--cceeeeeeEEeeCCCeEEEEe
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVL--HRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~--~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
.....|||||.++|-+... ..||||++.+|+... +.. .+....+.+|.|-|++++-..
T Consensus 390 wtrvvfSpd~~YvaAGS~d-----gsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSAD-----GSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cceeEECCCCceeeeccCC-----CcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 5678999999999975443 379999999998643 222 222367899999998876544
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.53 E-value=1.4 Score=48.48 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=34.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+|||+|++|.-+++.+..++...+-. ..++++.++.||...
T Consensus 226 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----------~~~~~~i~~~gH~~~ 271 (295)
T PRK03592 226 TSDVPKLLINAEPGAILTTGAIRDWCRSWPN----------QLEITVFGAGLHFAQ 271 (295)
T ss_pred cCCCCeEEEeccCCcccCcHHHHHHHHHhhh----------hcceeeccCcchhhh
Confidence 5789999999999999977666555333221 246778899999875
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=81.52 E-value=74 Score=38.77 Aligned_cols=161 Identities=13% Similarity=0.117 Sum_probs=81.5
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCce----eceeecceeeeeeEEeeCCCeEEEEecCCCCCc--c--
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKE----YPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKS--K-- 229 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~----~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g--~-- 229 (1012)
.+.++.+|+||+.+|+... . ...|++-.+.++.. ............|+|.++| .+. +.+...... .
T Consensus 364 ~~~s~avS~~g~~~A~v~~-~---~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vW-tvd~~~~~~~vl~v 437 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA-D---GDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLW-VVDRDPADPRLLWL 437 (599)
T ss_pred CccceEEcCCCceEEEEcC-C---CcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEE-EecCCCCCceEEEE
Confidence 5678999999999999843 1 24788876644433 1122333445778887777 443 322210000 0
Q ss_pred -cCCCCCceEEEEeeccc--cceeeeeeecCCCEEEEEECCCCCCceEEE--EeCCC-Cc--ccCcEEeeccCCCceeee
Q psy1288 230 -KHSKKNRSSAYHLTVNV--APITSQYITNEGPQFVFKTNKDAPNYRLIT--IDFDN-FA--ESNWKTLIEENKDDVLDW 301 (1012)
Q Consensus 230 -~~~~~~~~l~~~~~~~~--~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~--~dl~~-~~--~~~~~~l~~~~~~~~~~~ 301 (1012)
...++... ...... ..|....+|+||-+++++...+. ..+|+. +--.. +. ....+.+.+... . ...
T Consensus 438 ~~~~G~~~~---V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g-~~~v~va~V~R~~~G~~~l~~~~~l~~~l~-~-v~~ 511 (599)
T PRK13613 438 LQGDGEPVE---VRTPELDGHRVVAVRVARDGVRVALIVEKDG-RRSLQIGRIVRDAKAVVSVEEFRSLAPELE-D-VTD 511 (599)
T ss_pred EcCCCcEEE---eeccccCCCEeEEEEECCCccEEEEEEecCC-CcEEEEEEEEeCCCCcEEeeccEEeccCCC-c-cce
Confidence 00000000 000111 13555568999999999886433 223333 32211 11 111233333322 2 234
Q ss_pred eEEecCCEEEEEE-EcCceEEEEEEecCCCc
Q psy1288 302 ATCVANDKLILSY-IHHVKNVMHLHDLASGK 331 (1012)
Q Consensus 302 ~~~~~~~~l~~~~-~~~g~~~l~~~dl~~G~ 331 (1012)
..|.++..|++.. ...+...+++++++ |.
T Consensus 512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~vd-G~ 541 (599)
T PRK13613 512 MSWAGDSQLVVLGREEGGVQQARYVQVD-GS 541 (599)
T ss_pred eEEcCCCEEEEEeccCCCCcceEEEecC-Cc
Confidence 4555557776643 34446778888984 53
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.41 E-value=1.5 Score=47.89 Aligned_cols=58 Identities=22% Similarity=0.274 Sum_probs=43.7
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
.++++.-|.+..+. +|++|+||||+.+||.+++.-=.+. ..+ ..- -|+|...+..||=
T Consensus 258 ~dYYr~aSs~~~L~-------~Ir~PtLii~A~DDP~~~~~~iP~~-~~~--~np-------~v~l~~t~~GGHv 315 (345)
T COG0429 258 EDYYRQASSLPLLP-------KIRKPTLIINAKDDPFMPPEVIPKL-QEM--LNP-------NVLLQLTEHGGHV 315 (345)
T ss_pred HHHHHhcccccccc-------ccccceEEEecCCCCCCChhhCCcc-hhc--CCC-------ceEEEeecCCceE
Confidence 46688999999999 9999999999999999997321111 111 222 5788898888994
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=81.26 E-value=64 Score=34.79 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=41.5
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCcee--ceeecceeeeeeEEeeCCCeEEEEec
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEY--PEVLHRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~--~~t~~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
...-+....|+|||..+|= +|. ..+|++|++.+-..- .+.......-.+.|.+||+.|+-.+.
T Consensus 46 h~geI~~~~F~P~gs~~aS----gG~-Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFAS----GGS-DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred CcceEEEEEECCCCCeEee----cCC-cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC
Confidence 3456778899999999873 233 358999997654421 12333334567899999987765543
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=81.05 E-value=58 Score=39.27 Aligned_cols=162 Identities=10% Similarity=0.083 Sum_probs=77.4
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCC--C------Ccc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPK--S------KSK 229 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~--~------~g~ 229 (1012)
.+.++.+|+||+.+|+... +...|++... ++.. +....+.....++|.++| ++. +..++. . .|.
T Consensus 344 ~~~s~avS~~g~~~A~~~~----~~~~l~~~~~-g~~~-~~~~~g~~Lt~PS~d~~g-~vW-tv~~g~~~~vv~~~~~g~ 415 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG----SRTTLYTVSP-GQPA-RALTSGSTLTRPSFSPQD-WVW-TAGPGGNGRIVAYRPTGV 415 (573)
T ss_pred cccceeecCCCceEEEecC----CCcEEEEecC-CCcc-eeeecCCCccCCcccCCC-CEE-EeeCCCCceEEEEecCCC
Confidence 5678999999999999732 2247887765 3333 223333345677777776 343 322211 0 000
Q ss_pred cCCCCCceEEEEee-ccccceeeeeeecCCCEEEEEECCCCCCceEEE--EeCC-CCcccCcEEeeccCC---Cceeeee
Q psy1288 230 KHSKKNRSSAYHLT-VNVAPITSQYITNEGPQFVFKTNKDAPNYRLIT--IDFD-NFAESNWKTLIEENK---DDVLDWA 302 (1012)
Q Consensus 230 ~~~~~~~~l~~~~~-~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~--~dl~-~~~~~~~~~l~~~~~---~~~~~~~ 302 (1012)
.............. .....|....+|+||-+++++...++. .+|+. +--. .+. .+.|..... .......
T Consensus 416 ~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~-~~V~va~V~R~~~G~---P~~L~~~~~~~~~~~~~sl 491 (573)
T PRK13614 416 AEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGK-SRVQVAGIVRNEDGT---PRELTAPITLAADSDADTG 491 (573)
T ss_pred cccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCc-cEEEEEEEEeCCCCC---eEEccCceecccCCCccee
Confidence 00000000000000 001224455689999999998754332 22333 3221 122 223321110 1122334
Q ss_pred EEecCCEEEEEEE-cCceEEEEEEecCCCc
Q psy1288 303 TCVANDKLILSYI-HHVKNVMHLHDLASGK 331 (1012)
Q Consensus 303 ~~~~~~~l~~~~~-~~g~~~l~~~dl~~G~ 331 (1012)
.|.++..|++... .++..+.+++.+..|.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQ 521 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCC
Confidence 4555567766654 3445667788885444
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=80.97 E-value=96 Score=34.36 Aligned_cols=139 Identities=15% Similarity=0.073 Sum_probs=78.4
Q ss_pred CCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cce
Q psy1288 125 GLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRL 203 (1012)
Q Consensus 125 ~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~ 203 (1012)
+++...-||.....+ ..-.++- +..++....||-||.+||= |+-...|.|+...+|..+.... +..
T Consensus 83 GgDD~AflW~~~~ge-~~~eltg-------HKDSVt~~~FshdgtlLAT-----GdmsG~v~v~~~stg~~~~~~~~e~~ 149 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGE-FAGELTG-------HKDSVTCCSFSHDGTLLAT-----GDMSGKVLVFKVSTGGEQWKLDQEVE 149 (399)
T ss_pred CCCceEEEEEccCCc-ceeEecC-------CCCceEEEEEccCceEEEe-----cCCCccEEEEEcccCceEEEeecccC
Confidence 444566777654422 1122222 4568899999999999984 3223378888988887653222 333
Q ss_pred eeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCC
Q psy1288 204 KFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNF 282 (1012)
Q Consensus 204 ~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~ 282 (1012)
...-+.|.|-+..|++-+.++...-. .......+++. ....+.+...+.|||++++.... +..|...++.++
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~---Gh~~~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg 222 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS---GHNSPCTCGEFIPDGKRILTGYD----DGTIIVWNPKTG 222 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec---CCCCCcccccccCCCceEEEEec----CceEEEEecCCC
Confidence 34668899988766665554321000 00001111111 01122334457899999888764 456777787776
Q ss_pred c
Q psy1288 283 A 283 (1012)
Q Consensus 283 ~ 283 (1012)
.
T Consensus 223 ~ 223 (399)
T KOG0296|consen 223 Q 223 (399)
T ss_pred c
Confidence 4
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.82 E-value=1.9 Score=48.35 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=40.1
Q ss_pred hHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 793 EYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 793 ~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
+++...++..... +++.|+|||+|++|+.+++.....+ ++..- .+.+++.++.||-
T Consensus 240 ~~y~~~~~~~~l~-------~i~~P~lii~g~~D~~~~~~~~~~~----~~~~~-------~~~~~~~~~~GH~ 295 (324)
T PRK10985 240 DYYRQCSALPLLN-------QIRKPTLIIHAKDDPFMTHEVIPKP----ESLPP-------NVEYQLTEHGGHV 295 (324)
T ss_pred HHHHHCChHHHHh-------CCCCCEEEEecCCCCCCChhhChHH----HHhCC-------CeEEEECCCCCce
Confidence 3344555555556 8889999999999999997655544 22211 4688889999995
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=80.81 E-value=2e+02 Score=37.92 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=35.7
Q ss_pred eeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec---------------ceeeeeeEEeeCCCeEEEEe
Q psy1288 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH---------------RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 160 ~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~---------------~~~~~~~~WSpDG~~l~y~~ 221 (1012)
..++++|++..|.++ +.. ..+|+++|..+|......-. -....+++++|||+.||.+.
T Consensus 686 ~gVa~dp~~g~LyVa-d~~---~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 686 WDVCFEPVNEKVYIA-MAG---QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred eEEEEecCCCeEEEE-ECC---CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE
Confidence 367899977665443 332 23799999887765321100 01124589999999887664
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=80.59 E-value=0.046 Score=58.86 Aligned_cols=44 Identities=20% Similarity=0.101 Sum_probs=27.8
Q ss_pred CCceEEEcccCCCCCCCcch----------HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHS----------LKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
..++.+..|..|.......+ .++.+.|+.+|+ +..+..++ .+|-
T Consensus 183 ~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-------~~~~~~~~-G~H~ 236 (251)
T PF00756_consen 183 PLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGI-------PHTYHVFP-GGHD 236 (251)
T ss_dssp EEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEEC-------TTESEEEH-SESS
T ss_pred CCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCC-------CceEEEec-Cccc
Confidence 36788999999996653322 223333444455 88888887 4674
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=80.38 E-value=85 Score=34.81 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=34.9
Q ss_pred CEEEEEEEcCceEEEEEEecCCCceeeeecCC--ceEEEeecccccCcEEEEEecCCCCCcEEEEEe
Q psy1288 308 DKLILSYIHHVKNVMHLHDLASGKHLYTFPLD--VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372 (1012)
Q Consensus 308 ~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~--~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d 372 (1012)
+.++....+.| .-|.++.+.+|+...++.-+ ...+..++|++|+..|..+.++ .--.+|.++
T Consensus 185 G~llATASeKG-TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T--eTVHiFKL~ 248 (391)
T KOG2110|consen 185 GTLLATASEKG-TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT--ETVHIFKLE 248 (391)
T ss_pred CCEEEEeccCc-eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC--CeEEEEEec
Confidence 44444443333 56777777777655555433 3456788999999865544433 323344443
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=80.26 E-value=9.8 Score=44.41 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=44.6
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCcee-ceeec--ceeeeeeEEeeCCCeEEEEecC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEY-PEVLH--RLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~-~~t~~--~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
...+.+++|||||+++|-+... | .|+|++..+++.. +...+ +..-..+.|.=||+.|+.+..+
T Consensus 720 tdqIf~~AWSpdGr~~AtVcKD-g----~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 720 TDQIFGIAWSPDGRRIATVCKD-G----TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred cCceeEEEECCCCcceeeeecC-c----eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 4568899999999999966543 3 7999998877642 21111 1223568999999998888654
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=80.22 E-value=23 Score=39.10 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=66.4
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec---eeecceeeeeeEEeeCCCeEEEEecCCCC----C
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP---EVLHRLKFVSIAWTHDHKGVFYSNQEPKS----K 227 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~---~t~~~~~~~~~~WSpDG~~l~y~~~~~~~----~ 227 (1012)
+..++.+++|||..+-+.++.+-+| .|.|+|+..+.... .........-++|+-+-..|++-.+++.. .
T Consensus 256 H~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred cccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 3457889999999999999998877 68999998884332 12223345678998766544444333211 0
Q ss_pred cccC-CCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeC
Q psy1288 228 SKKH-SKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDF 279 (1012)
Q Consensus 228 g~~~-~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl 279 (1012)
.... +..-...-||. .+|....|+|.....+..+.. ..++...|+
T Consensus 332 R~~~~~~pVA~fk~Hk----~pItsieW~p~e~s~iaasg~---D~QitiWDl 377 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHK----APITSIEWHPHEDSVIAASGE---DNQITIWDL 377 (440)
T ss_pred hhccCCCcceeEEecc----CCeeEEEeccccCceEEeccC---CCcEEEEEe
Confidence 0000 00111222333 455555688877766665543 234555554
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=80.21 E-value=87 Score=33.37 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=40.9
Q ss_pred CceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecc--eeeeeeEEeeCCCeEEEEecC
Q psy1288 155 GTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHR--LKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 155 g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~--~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
+...+..++|||.|++||-.+-. .+.-|+.-.+++..- .++++ ...-.++||++|+.|+-.+.+
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD-----~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFD-----ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred chheeeeeeecCCCcEEEEeecc-----ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 45688999999999988865432 133333333444321 23332 235679999999988877654
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=80.21 E-value=50 Score=37.80 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=81.6
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
.+.+..|-.||+.+|- |++.-.+.|+|..+...++ ..-.........|+|++..++.+..++.....-+.++..
T Consensus 70 ~v~s~~fR~DG~Llaa-----GD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAA-----GDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ceeEEEeecCCeEEEc-----cCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 4678899999999986 3333478899965543332 212222345678899888877766543211000001110
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEc
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIH 316 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (1012)
+.+.......-+....|+|..+++++...-++ .+-..|..... ..+..-+-+..++.+....++.++++.
T Consensus 145 -v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg---~vrl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasA-- 214 (487)
T KOG0310|consen 145 -VQAELSGHTDYVRCGDISPANDHIVVTGSYDG---KVRLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASA-- 214 (487)
T ss_pred -EEEEecCCcceeEeeccccCCCeEEEecCCCc---eEEEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEc--
Confidence 11111000012334568888899998876543 33334443321 112222223334444433334444432
Q ss_pred CceEEEEEEecCCCce
Q psy1288 317 HVKNVMHLHDLASGKH 332 (1012)
Q Consensus 317 ~g~~~l~~~dl~~G~~ 332 (1012)
|-+.+.+||+.+|..
T Consensus 215 -gGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 215 -GGNSVKVWDLTTGGQ 229 (487)
T ss_pred -CCCeEEEEEecCCce
Confidence 346789999965643
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=80.21 E-value=16 Score=38.52 Aligned_cols=90 Identities=17% Similarity=0.069 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCCCCCCcCh-hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 434 CILYGYGGFAVSLQPGFSV-TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 434 ~vv~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
.||.+-||.-....|.... ..++.|+++||+|++.=+.-+ + +...... .....+..+++.|.+.....+.
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~t--f--DH~~~A~-----~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVT--F--DHQAIAR-----EVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCC--C--cHHHHHH-----HHHHHHHHHHHHHHHhcCCCcc
Confidence 6777888754444554432 245667778999988776532 1 1111111 1233456667777766543333
Q ss_pred --cEEEEecChHHHHHHHHHhh
Q psy1288 513 --RLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 513 --~i~i~G~S~GG~l~~~~~~~ 532 (1012)
.+.-+|||+|+.+.+.+...
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~ 110 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSL 110 (250)
T ss_pred cCCeeeeecccchHHHHHHhhh
Confidence 46678999999887765544
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1012 | ||||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 1e-137 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 2e-31 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 6e-27 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 1e-137 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 2e-31 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 7e-27 | ||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 1e-133 | ||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 1e-31 | ||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 7e-27 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 1e-133 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 1e-31 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 7e-27 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 1e-133 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 1e-31 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 7e-27 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 1e-133 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 1e-31 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 2e-26 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 1e-133 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 1e-31 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 2e-26 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 1e-133 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 4e-31 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 7e-27 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 1e-133 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 5e-31 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 6e-27 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 1e-132 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 8e-31 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 7e-27 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 1e-132 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 1e-30 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 7e-27 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-94 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 2e-23 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 5e-15 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 7e-87 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 4e-25 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 4e-16 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 4e-86 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 1e-25 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 3e-16 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 3e-85 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 2e-24 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 3e-16 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 3e-85 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 2e-24 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 3e-16 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 2e-74 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 4e-16 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 3e-15 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 3e-35 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 4e-06 | ||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 6e-35 | ||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 3e-06 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 1e-05 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 1e-05 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 1e-05 | ||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 2e-05 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 3e-05 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 3e-05 |
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1012 | |||
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.93 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.93 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.93 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.93 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.93 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.92 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.89 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.88 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.76 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 99.75 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.74 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.73 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.73 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.72 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.72 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.71 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.69 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.69 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.68 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.66 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.66 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.65 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.65 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.64 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.63 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.63 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.63 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.63 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.63 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.62 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.62 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.62 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.62 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.61 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.61 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.61 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.6 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.6 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.6 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.59 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.59 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.58 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.57 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.57 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.57 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.55 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.55 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.55 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.54 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.54 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.54 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.53 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.53 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.53 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.52 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.51 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.5 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.5 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.5 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.5 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.5 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.49 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.49 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.49 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.48 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.48 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.47 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.46 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.46 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.44 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.43 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.43 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.42 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.42 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.42 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.41 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.4 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.4 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.4 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.4 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.39 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.39 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.39 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.39 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.38 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.38 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.37 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.35 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.35 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.33 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.33 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.32 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.32 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.32 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.32 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.31 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.31 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.3 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.29 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.29 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.29 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.29 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.28 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.26 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.26 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.25 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.25 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.24 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.22 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.21 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.21 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.18 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.18 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.16 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.15 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.15 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.14 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.14 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.12 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.12 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.12 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.07 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.07 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.07 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.07 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.07 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.06 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.05 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.05 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.05 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.05 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.04 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.04 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.03 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.03 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.02 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.02 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.01 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.01 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.01 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.01 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.01 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.0 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.0 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.0 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.0 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.0 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 98.99 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 98.99 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 98.99 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.98 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 98.98 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 98.98 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 98.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.97 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 98.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.96 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 98.96 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 98.93 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 98.92 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 98.92 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 98.92 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 98.91 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 98.9 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 98.9 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 98.89 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 98.89 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 98.88 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 98.87 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 98.87 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 98.87 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 98.86 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 98.86 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 98.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.83 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 98.83 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 98.82 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 98.82 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 98.81 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 98.81 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 98.81 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 98.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 98.79 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 98.78 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 98.78 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 98.77 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.77 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 98.77 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.75 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 98.73 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 98.73 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.72 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.72 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 98.71 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 98.71 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.71 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 98.71 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 98.7 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 98.69 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 98.68 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 98.68 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 98.67 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 98.67 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 98.67 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 98.66 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 98.65 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 98.64 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 98.64 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 98.64 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 98.64 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 98.64 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 98.62 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 98.61 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 98.6 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 98.59 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 98.59 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.58 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 98.56 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 98.56 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 98.55 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.55 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 98.55 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.55 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 98.53 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 98.51 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 98.51 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 98.51 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 98.5 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.47 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.44 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.44 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 97.81 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.43 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 98.42 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 98.41 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 98.4 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.39 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.39 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 98.39 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 98.38 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.38 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.36 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 98.35 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 98.34 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.33 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.33 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.32 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 98.32 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.31 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 98.31 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 98.29 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.28 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 98.26 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.25 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.25 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.24 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 98.24 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 98.23 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 98.23 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 98.23 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 98.21 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.21 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.2 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.2 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.19 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 98.19 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.18 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 98.18 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 98.17 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.17 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 98.16 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.16 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 98.15 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.12 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 98.12 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 98.11 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.11 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.1 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.1 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.08 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.08 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 98.08 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 98.08 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.07 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 98.07 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 98.07 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.05 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 98.04 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 98.04 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 98.03 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 98.03 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 98.03 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 98.02 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 98.01 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 98.01 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.01 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.99 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 97.98 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.97 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 97.97 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 97.96 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 97.96 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 97.95 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 97.94 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 97.94 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 97.94 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.94 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 97.93 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 97.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.93 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 97.92 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.92 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 97.92 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.92 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 97.92 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 97.92 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 97.9 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.9 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 97.88 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.88 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 97.88 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 97.87 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.87 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 97.85 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 97.84 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 97.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 97.83 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 97.82 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 97.82 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 97.82 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 97.81 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 97.81 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 97.81 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.8 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.8 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.8 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.8 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.79 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 97.79 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.78 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.77 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.75 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 97.74 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 97.74 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.74 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.74 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.74 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.73 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 97.73 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 97.72 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 97.71 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 97.71 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.7 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 97.68 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.67 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.67 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.65 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.65 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 97.65 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 97.63 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.63 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.63 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 97.63 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 97.63 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 97.62 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.62 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.61 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.61 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.6 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 97.6 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 97.59 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 97.59 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.59 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.58 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 97.58 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.58 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 97.56 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 97.55 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 97.55 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.54 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 97.54 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.53 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.53 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 97.52 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.51 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.51 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.51 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 97.5 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 97.49 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 97.48 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 97.46 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.46 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.43 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.43 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.42 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 97.41 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.4 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 97.39 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 97.38 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 97.37 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.37 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 97.34 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 97.32 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.31 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 97.29 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 97.27 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.27 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.27 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.26 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 97.26 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.24 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 97.24 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 97.22 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.22 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 97.22 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.21 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.2 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.19 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.19 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.18 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.17 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.16 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.14 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.14 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.14 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 97.13 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 97.12 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.11 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 97.11 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 97.11 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.11 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.09 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.08 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 97.07 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.06 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.06 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.03 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 97.03 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.03 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.02 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.01 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.01 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 97.0 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 96.94 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.92 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.9 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.87 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 96.87 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 96.87 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.86 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 96.86 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 96.82 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.8 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.8 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.8 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.78 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 96.77 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 96.76 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 96.75 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 96.74 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.73 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.73 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 96.72 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.68 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 96.68 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 96.65 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 96.65 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.64 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.61 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.6 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 96.59 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.58 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 96.55 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.54 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 96.54 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 96.54 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 96.53 |
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-75 Score=726.88 Aligned_cols=614 Identities=43% Similarity=0.777 Sum_probs=513.4
Q ss_pred cCCCCCCccCcceeecccCccccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCCCCCCCeee
Q psy1288 35 KFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQ 114 (1012)
Q Consensus 35 ~~~~P~a~~~~~~~~~~hG~~~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~~d 114 (1012)
.+.||+|+|+|++ +++||+++.|||+||||.++|+|++||++||+||+++|++++++++|++||+++++++++++|+++
T Consensus 9 ~~~~p~~~~~~~~-~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~ 87 (693)
T 3iuj_A 9 RLHYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKEKLAASWNYAKEGAPFRE 87 (693)
T ss_dssp -CCCCCCCCCCCE-EEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEECCCEEE
T ss_pred CCCCCCCCCCCeE-EEeCCccccCCchhhcCCCCHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHhhccccCCCCEEE
Confidence 3579999999965 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc
Q psy1288 115 GDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK 194 (1012)
Q Consensus 115 G~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~ 194 (1012)
|+++||.+++++++++.+||++. ++++++|+|+|++++++.+.++.++|||||++|||+.+..|+++++|+++|+++|+
T Consensus 88 g~~~y~~~~~~~~~~~~~~r~~~-~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~ 166 (693)
T 3iuj_A 88 GRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ 166 (693)
T ss_dssp TTEEEEEEECSSCSSCEEEEECT-TSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS
T ss_pred CCEEEEEEEcCCCceeEEEEeCC-CCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC
Confidence 99999999999888899999764 56789999999999998889999999999999999999999999999999999999
Q ss_pred eeceeecceeeeeeEEeeCCCeEEEEecCCC--------C---------Ccc---------cCCC-------------CC
Q psy1288 195 EYPEVLHRLKFVSIAWTHDHKGVFYSNQEPK--------S---------KSK---------KHSK-------------KN 235 (1012)
Q Consensus 195 ~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~--------~---------~g~---------~~~~-------------~~ 235 (1012)
.+++++...++++++|| ||+.|+|++.+.. . .++ .... ..
T Consensus 167 ~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg 245 (693)
T 3iuj_A 167 PLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD 245 (693)
T ss_dssp EEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS
T ss_pred CCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC
Confidence 88877777656889999 9999999986532 0 111 0000 00
Q ss_pred ceEEEEeecc----c--------c--c---e------eeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeec
Q psy1288 236 RSSAYHLTVN----V--------A--P---I------TSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIE 292 (1012)
Q Consensus 236 ~~l~~~~~~~----~--------~--~---i------~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~ 292 (1012)
..+++..... . . . + .+..|+++|++|||++|+++++++|+.+++++++...|+.|++
T Consensus 246 ~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 246 RFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp CEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred CEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence 0111111100 0 0 0 1 1234889999999999998889999999998877667899998
Q ss_pred cCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEE
Q psy1288 293 ENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
+.+.. + .+... +++|++.+.+++..+|++++++ |+..+.++++ .+.+..++++++++.++|.++++.+|.++|.+
T Consensus 326 ~~~~~-~-~~s~~-g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~ 401 (693)
T 3iuj_A 326 ERQQV-L-TVHSG-SGYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF 401 (693)
T ss_dssp CCSSC-E-EEEEE-TTEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred CCCCE-E-EEEEE-CCEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence 87654 4 44444 4899999999999999999995 5555677766 56777888899999999999999999999999
Q ss_pred eCCCCCCCCCCcceEEEEeccCCCCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC
Q psy1288 372 NIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS 451 (1012)
Q Consensus 372 d~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~ 451 (1012)
|+ +++ +.++++.... .+++..+.++++++++.||.+|++++++|++...+++.|+||++|||++....+.|+
T Consensus 402 d~-----~~g--~~~~l~~~~~-~~~~~~~~~~~~~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~ 473 (693)
T 3iuj_A 402 EP-----KSG--AISLYRASAA-PFKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFS 473 (693)
T ss_dssp CT-----TTC--CEEEEECCCS-SCCGGGEEEEEEEEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCC
T ss_pred EC-----CCC--eEEEEEeCCC-CcChhhCeeEEEEEecCCCcEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccC
Confidence 99 466 5677776544 477778889999999999999999999999876678899999999999888888998
Q ss_pred hhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh
Q psy1288 452 VTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN 531 (1012)
Q Consensus 452 ~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 531 (1012)
.....+++ +||+|+++|+||++++|..|+..+....+.+.++|+.+++++|++++.+++++|+|+|+|+||++++++++
T Consensus 474 ~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~ 552 (693)
T 3iuj_A 474 VSVANWLD-LGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMT 552 (693)
T ss_dssp HHHHHHHH-TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHh
Confidence 87655555 79999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred hCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccc
Q psy1288 532 QRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWE 611 (1012)
Q Consensus 532 ~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~ 611 (1012)
++|++|+++|+.+| + .|++.+..+..+..|.
T Consensus 553 ~~p~~~~a~v~~~~---~----------------------------------------------~d~~~~~~~~~~~~~~ 583 (693)
T 3iuj_A 553 QRPDLMRVALPAVG---V----------------------------------------------LDMLRYHTFTAGTGWA 583 (693)
T ss_dssp HCTTSCSEEEEESC---C----------------------------------------------CCTTTGGGSGGGGGCH
T ss_pred hCccceeEEEecCC---c----------------------------------------------chhhhhccCCCchhHH
Confidence 99999999999999 2 2223333344555677
Q ss_pred cccCCCCChHH-HHHHHcCCcccCCCCCCcccC-CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEE
Q psy1288 612 SDYGSPANSSQ-FEYLLGYSPLHNIQGPDELKG-KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIR 689 (1012)
Q Consensus 612 ~~~g~p~~~~~-~~~~~~~sP~~~~~~p~~~~~-~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~ 689 (1012)
.+||+|.+++. ++.+..+||+.++. . +++|++|++||.+|++|++.++.+++++|+++ ..++.+++++
T Consensus 584 ~~~g~p~~~~~~~~~~~~~sp~~~~~------~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~----~~~~~~~~~~ 653 (693)
T 3iuj_A 584 YDYGTSADSEAMFDYLKGYSPLHNVR------PGVSYPSTMVTTADHDDRVVPAHSFKFAATLQAD----NAGPHPQLIR 653 (693)
T ss_dssp HHHCCTTSCHHHHHHHHHHCHHHHCC------TTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHH----CCSSSCEEEE
T ss_pred HHcCCccCHHHHHHHHHhcCHHHhhc------ccCCCCceeEEecCCCCCCChhHHHHHHHHHHhh----CCCCCCEEEE
Confidence 78999987777 88899999999988 5 79999999999999999999999999999988 2224799999
Q ss_pred EeCCCCCCCCCccccchhhhhHHHHHHHHhCCCC
Q psy1288 690 IETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 690 ~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
+++++||++........+..+++++||.++++..
T Consensus 654 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 654 IETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYR 687 (693)
T ss_dssp EEC-------CHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EeCCCCCCCcccHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999998765556788889999999998763
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-72 Score=702.61 Aligned_cols=629 Identities=54% Similarity=1.000 Sum_probs=524.4
Q ss_pred CCCCCCccCcceeecccCccccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCCCCCCCeeeC
Q psy1288 36 FEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQG 115 (1012)
Q Consensus 36 ~~~P~a~~~~~~~~~~hG~~~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~~dG 115 (1012)
+.||+|+|+|.+++++||+++.|||+||||.+++++++||++||++++++|++++++++|.++++++++.++++.|+|+|
T Consensus 4 ~~~p~~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~dG 83 (710)
T 2xdw_A 4 FQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKKG 83 (710)
T ss_dssp SCCCCCCCCTTCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHCSCEECCCEEET
T ss_pred CCCCCCCCCCCeeeeeCCcEEccCChhhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEEC
Confidence 47999999983349999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCce
Q psy1288 116 DHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKE 195 (1012)
Q Consensus 116 ~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~ 195 (1012)
+++||+++++++.+..||+++..++++++|+|+|+++.++...+..++|||||++|||+.+.+|+++++|+++|+++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~ 163 (710)
T 2xdw_A 84 KRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE 163 (710)
T ss_dssp TEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred CEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC
Confidence 99999999887778899999988888999999999998877789999999999999999999999999999999999998
Q ss_pred eceeecceeeeeeEEeeCCCeEEEEecCCC-------------C-------Ccc-c-------CCC-------------C
Q psy1288 196 YPEVLHRLKFVSIAWTHDHKGVFYSNQEPK-------------S-------KSK-K-------HSK-------------K 234 (1012)
Q Consensus 196 ~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~-------------~-------~g~-~-------~~~-------------~ 234 (1012)
++++.....+++++|||||+.|+|++.+.. . .++ . ... .
T Consensus 164 ~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD 243 (710)
T 2xdw_A 164 LPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD 243 (710)
T ss_dssp EEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred CcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC
Confidence 877776665678999999999999975432 0 010 0 000 0
Q ss_pred CceEEEEee-------------cccc------c---e---------eeeeeecCCCEEEEEECCCCCCceEEEEeCCCCc
Q psy1288 235 NRSSAYHLT-------------VNVA------P---I---------TSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFA 283 (1012)
Q Consensus 235 ~~~l~~~~~-------------~~~~------~---i---------~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~ 283 (1012)
...+++... .. . + + ....|+++|++|+|.++.++++++|+.+++++++
T Consensus 244 g~~l~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 244 GRYVLLSIREGCDPVNRLWYCDLQ-QESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SCEEEEEEECSSSSCCEEEEEEGG-GSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CCEEEEEEEccCCCccEEEEEECc-ccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 011111110 00 1 1 1 1335899999999999988889999999998775
Q ss_pred ccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCC
Q psy1288 284 ESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFL 363 (1012)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~ 363 (1012)
...|+.|+++.+...+..+.+.+++.+++....++..+|+++++.+|+..+.++.+.+.+..++++++++.++|+++++.
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~ 402 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL 402 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSS
T ss_pred cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCC
Confidence 44689999887666677777775589999999999999999999777766678777777878889999999999999999
Q ss_pred CCcEEEEEeCCCCCCCCCCcc--eEEEEeccCCCCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCC
Q psy1288 364 QPTIIFHCNIPARVDPNSKLE--TSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG 441 (1012)
Q Consensus 364 ~p~~l~~~d~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg 441 (1012)
+|.++|.+|+ .++ + .+++++.....+++..+.++++++++.||.+|+++++.|++...+++.|+||++|||
T Consensus 403 ~P~~i~~~d~-----~tg--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~~~~~P~vl~~hGg 475 (710)
T 2xdw_A 403 SPGIIYHCDL-----TKE--ELEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGG 475 (710)
T ss_dssp CCCEEEEEET-----TSS--SCCCEEEEECCCTTCCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCC
T ss_pred CCCEEEEEEC-----CCC--ccceEEeeecccCCcCccccEEEEEEEEcCCCCEEEEEEEecCCCCCCCCccEEEEEcCC
Confidence 9999999999 466 4 567777666668888889999999999999999999999987667889999999999
Q ss_pred CCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecCh
Q psy1288 442 FAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSN 521 (1012)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~ 521 (1012)
++....+.|+.....+++.+||+|+++|+||++++|..|+..+...++.+.++|+.+++++|++++++++++|+|+|+|+
T Consensus 476 ~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~ 555 (710)
T 2xdw_A 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSN 555 (710)
T ss_dssp TTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETH
T ss_pred CCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECH
Confidence 98888888887766666636999999999999999999999888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhc
Q psy1288 522 GGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKF 601 (1012)
Q Consensus 522 GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~ 601 (1012)
||++++++++++|++|+++|+.+| +.| ++.+
T Consensus 556 GG~la~~~a~~~p~~~~~~v~~~~---~~d----------------------------------------------~~~~ 586 (710)
T 2xdw_A 556 GGLLVATCANQRPDLFGCVIAQVG---VMD----------------------------------------------MLKF 586 (710)
T ss_dssp HHHHHHHHHHHCGGGCSEEEEESC---CCC----------------------------------------------TTTG
T ss_pred HHHHHHHHHHhCccceeEEEEcCC---ccc----------------------------------------------Hhhc
Confidence 999999999999999999999999 222 2222
Q ss_pred cccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCC
Q psy1288 602 NKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPH 681 (1012)
Q Consensus 602 ~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~ 681 (1012)
..+..+..|..+||+|.+++.++.+..++|+.++.... +.++++||+|++||.+|.+|++.++.+++++|+.+......
T Consensus 587 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~-~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~ 665 (710)
T 2xdw_A 587 HKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPE-ADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRK 665 (710)
T ss_dssp GGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCS-STTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTT
T ss_pred cccCCChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccc-cccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccC
Confidence 22333445667789988888888999999998876100 00367877999999999999999999999999875211122
Q ss_pred CCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 682 QTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 682 ~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
++.++++++++++||++.....+..+...++++||.++++.
T Consensus 666 ~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 666 QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp CCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 36789999999999998776544567888999999998764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-72 Score=697.25 Aligned_cols=614 Identities=35% Similarity=0.677 Sum_probs=511.8
Q ss_pred CCCCCccCcceeecccCccccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCCCCCCCeeeCC
Q psy1288 37 EYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQRQGD 116 (1012)
Q Consensus 37 ~~P~a~~~~~~~~~~hG~~~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~~dG~ 116 (1012)
.||+|+|+|++ +++||+++.|||+||||.++|+|++||++||+||+++|++++++++|+++|+++++.++.+.|+|+|+
T Consensus 2 ~~p~~~~~~~~-~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~dG~ 80 (695)
T 2bkl_A 2 SYPATRAEQVV-DTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREALAARFKELFYTDSVSTPSRRNG 80 (695)
T ss_dssp CCSCCCCCCCE-EEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHSCCEECCCEEETT
T ss_pred CCCCCCCCCee-eeeCCcEEecCChHhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEECC
Confidence 58999999965 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCcee
Q psy1288 117 HYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEY 196 (1012)
Q Consensus 117 ~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~ 196 (1012)
++||+++++++++..||+++..++++++|+|+|.+++++...+..++|||||++|||+.+..|+++.+|+++|+++|+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~ 160 (695)
T 2bkl_A 81 RFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS 160 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC
T ss_pred EEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc
Confidence 99999998877789999999888889999999999988888899999999999999999999999999999999999987
Q ss_pred -ceeecceeeeeeEEeeCCCeEEEEecCCCC-----------------Ccc-c-------CC-C------------CCce
Q psy1288 197 -PEVLHRLKFVSIAWTHDHKGVFYSNQEPKS-----------------KSK-K-------HS-K------------KNRS 237 (1012)
Q Consensus 197 -~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~-----------------~g~-~-------~~-~------------~~~~ 237 (1012)
...+....+.+++|||||+.|+|++.+... .++ . .. . ....
T Consensus 161 ~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 240 (695)
T 2bkl_A 161 KVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY 240 (695)
T ss_dssp SSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC
T ss_pred CCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE
Confidence 444555444789999999999999764320 010 0 00 0 0001
Q ss_pred EEEEeecc------------c----------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC
Q psy1288 238 SAYHLTVN------------V----------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK 295 (1012)
Q Consensus 238 l~~~~~~~------------~----------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~ 295 (1012)
+++....+ . ....++ +.++|+ ||+.++.++++++|+.+|+++++...|+.|+++.+
T Consensus 241 l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 241 LFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEV-HAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp EEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEE-EEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred EEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEE-EecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 11111000 0 011133 347888 99999988889999999998776556899998876
Q ss_pred CceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 296 DDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
...+..+.+.+ +.+++....++..+|+++++ +|+..+.+.++ .+.+..+++++|++.++|+++++.+|.++|++|+
T Consensus 319 ~~~l~~~~~~~-~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~- 395 (695)
T 2bkl_A 319 SASLLSVSIVG-GHLSLEYLKDATSEVRVATL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV- 395 (695)
T ss_dssp SCEEEEEEEET-TEEEEEEEETTEEEEEEEET-TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET-
T ss_pred CCeEEEEEEEC-CEEEEEEEECCEEEEEEEeC-CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC-
Confidence 66677776665 88999999999999999998 46555667766 6677788899999999999999999999999999
Q ss_pred CCCCCCCCcceEEEEeccCCCCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhH
Q psy1288 375 ARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTK 454 (1012)
Q Consensus 375 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~ 454 (1012)
.++ +.++++..... +++..+..+++++++.||.+|+++++.|++...+++.|+||++|||++....+.|+...
T Consensus 396 ----~~g--~~~~l~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~~~~~~~~~~~~ 468 (695)
T 2bkl_A 396 ----STG--KSELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSI 468 (695)
T ss_dssp ----TTC--CEEEEEECCCS-SCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCGGG
T ss_pred ----CCC--cEEEEecCCCC-CCHHHCeEEEEEEECCCCCEEEEEEEECCCCCCCCCccEEEEECCCCccccCCCcCHHH
Confidence 466 56777765443 77777889999999999999999999999876678899999999999888888888776
Q ss_pred HHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC
Q psy1288 455 IVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534 (1012)
Q Consensus 455 ~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 534 (1012)
..++. +||+|+++|+||++++|..|+..+....+.+.++|+.+++++|++++++++++|+|+|+|+||++++++++++|
T Consensus 469 ~~l~~-~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p 547 (695)
T 2bkl_A 469 LPWLD-AGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRP 547 (695)
T ss_dssp HHHHH-TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCG
T ss_pred HHHHh-CCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCC
Confidence 55555 79999999999999999999998887788889999999999999999999999999999999999999999999
Q ss_pred CceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccccccccccccc
Q psy1288 535 DLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDY 614 (1012)
Q Consensus 535 ~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~ 614 (1012)
++|+++|+.+| +.| +..+..+..+..|..+|
T Consensus 548 ~~~~~~v~~~~---~~d----------------------------------------------~~~~~~~~~~~~~~~~~ 578 (695)
T 2bkl_A 548 ELYGAVVCAVP---LLD----------------------------------------------MVRYHLFGSGRTWIPEY 578 (695)
T ss_dssp GGCSEEEEESC---CCC----------------------------------------------TTTGGGSTTGGGGHHHH
T ss_pred cceEEEEEcCC---ccc----------------------------------------------hhhccccCCCcchHHHh
Confidence 99999999999 222 12222223344556778
Q ss_pred CCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCC
Q psy1288 615 GSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA 694 (1012)
Q Consensus 615 g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~ 694 (1012)
|.|.+++.++.+..++|+.+++. ...+||+|++||.+|.+|++.++.+++++|+.+ ...+.++.+++++++
T Consensus 579 g~~~~~~~~~~~~~~sp~~~~~~-----~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~ 649 (695)
T 2bkl_A 579 GTAEKPEDFKTLHAYSPYHHVRP-----DVRYPALLMMAADHDDRVDPMHARKFVAAVQNS----PGNPATALLRIEANA 649 (695)
T ss_dssp CCTTSHHHHHHHHHHCGGGCCCS-----SCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTS----TTCCSCEEEEEETTC
T ss_pred CCCCCHHHHHHHHhcChHhhhhh-----cCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhh----ccCCCCEEEEEeCCC
Confidence 99988888889999999999882 134577999999999999999999999999983 111789999999999
Q ss_pred CCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 695 GHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 695 gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
||++.....+..+.+..+++||.++++.
T Consensus 650 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 677 (695)
T 2bkl_A 650 GHGGADQVAKAIESSVDLYSFLFQVLDV 677 (695)
T ss_dssp BTTBCSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 9998765445567788899999999875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-70 Score=681.71 Aligned_cols=612 Identities=39% Similarity=0.697 Sum_probs=496.9
Q ss_pred cCCCCCCccCcceeecccCccccCCCCCCCCC--CCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCCCCCCCe
Q psy1288 35 KFEYPKARKNESLVDEYHGVKIPDPYGWMEDP--DSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQ 112 (1012)
Q Consensus 35 ~~~~P~a~~~~~~~~~~hG~~~~Dpy~WLed~--~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~ 112 (1012)
...||+|+|+|++ +++||++++|||+||||. ++|++++||++||+|++++|++++++++|+++++++++.++.+.|+
T Consensus 37 ~~~~p~~~~~~~~-~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~aen~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~ 115 (741)
T 1yr2_A 37 LPPYPASPQVPLV-EDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLPERAALEKRMKALIDYERFGLPQ 115 (741)
T ss_dssp -CCCCCCCCCCCE-EEETTEEEECTTGGGGSCTTTCHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEECCCE
T ss_pred cCCCCCCCCCCee-eeeCCcEEccCcHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcccccCCCE
Confidence 3568999999965 999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCC---CCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSL---DGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~---~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
|||+++||+++++++++..||+++.. ++++++|+|+|+++.++...+..++|||||++|||+.+.+|+++.+||++|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 99999999999887778999999987 788999999999998877789999999999999999999999999999999
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCC------------------Ccc---------cCCC---------
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKS------------------KSK---------KHSK--------- 233 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~------------------~g~---------~~~~--------- 233 (1012)
+++|+.+++......+++++|||| +.|+|++.+... .++ ....
T Consensus 196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 274 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS 274 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEE
Confidence 999998776666555578999999 999999754320 110 0000
Q ss_pred --C-CceEEEEeecc-------------cc--c-ee---------eeeeecCCCEEEEEECCCCCCceEEEEeCCCCccc
Q psy1288 234 --K-NRSSAYHLTVN-------------VA--P-IT---------SQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAES 285 (1012)
Q Consensus 234 --~-~~~l~~~~~~~-------------~~--~-i~---------~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~ 285 (1012)
. ...+++..... .. . +. ...++|+|++|+|.++.++++++|+.+|+++++ .
T Consensus 275 ~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~ 353 (741)
T 1yr2_A 275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-P 353 (741)
T ss_dssp ECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-C
T ss_pred ECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-c
Confidence 0 00111111000 01 1 11 223678999999999998889999999998753 3
Q ss_pred CcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCC
Q psy1288 286 NWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQ 364 (1012)
Q Consensus 286 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~ 364 (1012)
.|+.++++.+. .+..+.+.+ +.+++....++..+|+++++ +|+..+.++++ .+.+..+++++|++.++|+++++.+
T Consensus 354 ~~~~l~~~~~~-~l~~~~~~~-~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 354 RFDTVVPESKD-NLESVGIAG-NRLFASYIHDAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp EEEEEECCCSS-EEEEEEEEB-TEEEEEEEETTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred ccEEEecCCCC-eEEEEEEEC-CEEEEEEEECCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 58888877644 456666665 88999999999999999998 46555667766 6777788999999999999999999
Q ss_pred CcEEEEEeCCCCCCCCCCcceEEEEeccCCCCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCC
Q psy1288 365 PTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAV 444 (1012)
Q Consensus 365 p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~ 444 (1012)
|.++|++|+ .++ +.+++++. ...+++..+..+++++++.||.+|+++++.|++. .++.|+||++|||++.
T Consensus 431 P~~i~~~d~-----~tg--~~~~l~~~-~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~--~~~~p~vl~~hGg~~~ 500 (741)
T 1yr2_A 431 PATVLALDP-----ATA--KTTPWEPV-HLTFDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNV 500 (741)
T ss_dssp EEEEEEEET-----TTT--EEEECSCC-CCSSCGGGEEEEEEEEECTTSCEEEEEEEEETTC--CSCCCEEEECCCCTTC
T ss_pred CCEEEEEEC-----CCC--cEEEEecC-CCCCChhHCEEEEEEEEcCCCCEEEEEEEecCCC--CCCCcEEEEECCCCCc
Confidence 999999999 466 56666653 3357777888999999999999999999999875 5678999999999988
Q ss_pred CCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHH
Q psy1288 445 SLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGL 524 (1012)
Q Consensus 445 ~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~ 524 (1012)
...+.|+.....++ ++||+|+++|+||++++|..|+..+...++.+.++|+.+++++|++++++++++|+|+|+|+||+
T Consensus 501 ~~~~~~~~~~~~l~-~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~ 579 (741)
T 1yr2_A 501 ALTPWFSAGFMTWI-DSGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGL 579 (741)
T ss_dssp CCCCCCCHHHHHHH-TTTCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHH
T ss_pred cCCCCcCHHHHHHH-HCCcEEEEEecCCCCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHH
Confidence 88888887755444 57999999999999999999999888778888899999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccc
Q psy1288 525 LTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKF 604 (1012)
Q Consensus 525 l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~ 604 (1012)
+++++++++|++|+++|+.+| +.| ++.+..+
T Consensus 580 la~~~~~~~p~~~~~~v~~~~---~~d----------------------------------------------~~~~~~~ 610 (741)
T 1yr2_A 580 LIGAVTNQRPDLFAAASPAVG---VMD----------------------------------------------MLRFDQF 610 (741)
T ss_dssp HHHHHHHHCGGGCSEEEEESC---CCC----------------------------------------------TTSGGGS
T ss_pred HHHHHHHhCchhheEEEecCC---ccc----------------------------------------------cccccCC
Confidence 999999999999999999999 222 1222222
Q ss_pred ccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccC-CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCC
Q psy1288 605 TIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKG-KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQT 683 (1012)
Q Consensus 605 ~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~-~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~ 683 (1012)
..+..|..+||+|.+++.++.+..++|+.+++ . ++|||+|++||.+|.+|++.++.+++++|+.. ...+
T Consensus 611 ~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~------~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~----~~~g 680 (741)
T 1yr2_A 611 TAGRYWVDDYGYPEKEADWRVLRRYSPYHNVR------SGVDYPAILVTTADTDDRVVPGHSFKYTAALQTA----AIGP 680 (741)
T ss_dssp TTGGGGHHHHCCTTSHHHHHHHHTTCGGGCCC------TTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHS----CCCS
T ss_pred CCCchhHHHcCCCCCHHHHHHHHHcCchhhhh------ccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhh----hcCC
Confidence 33444557789988888889999999999988 4 78877999999999999999999999999982 1128
Q ss_pred CcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 684 NPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 684 ~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.++.+++++++||++.....+..+...++++||.++++.
T Consensus 681 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 719 (741)
T 1yr2_A 681 KPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGL 719 (741)
T ss_dssp SCEEEEEC---------CHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 899999999999998775444567888999999999865
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-69 Score=674.49 Aligned_cols=617 Identities=24% Similarity=0.389 Sum_probs=496.7
Q ss_pred CCCCCCccCcceeecccC---------------ccccCCCCCCCCCC--CHHHHHHHHHhhhchHhhhccC-CChHHHHH
Q psy1288 36 FEYPKARKNESLVDEYHG---------------VKIPDPYGWMEDPD--SEETKKFVDEENAISRPYLEDH-PDRDKVKA 97 (1012)
Q Consensus 36 ~~~P~a~~~~~~~~~~hG---------------~~~~Dpy~WLed~~--~~~~~~~l~~qn~~t~~~l~~~-~~~~~l~~ 97 (1012)
+.||+|+|+|++ ++ || +++.|||+||||.+ ||+|++||++||+||+++|+++ +++++|++
T Consensus 31 ~~~p~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~d~y~wl~d~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~l~~ 108 (751)
T 2xe4_A 31 AQPPIAAKKPHR-VT-LGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYA 108 (751)
T ss_dssp CCCCCCCCCCCE-EE-ESCCTTSCCCSSCCSSCEEEECTTGGGCCTTSCCHHHHHHHHHHHHHHHHHHGGGHHHHHHHHH
T ss_pred CCCCCCCCCCee-ec-CCCcccccccccccCCCeEEeeCCccccCCCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 469999999966 88 99 99999999999999 9999999999999999999999 99999999
Q ss_pred HHhhcccCCCCCCCeeeCCEEEEEEEcCCCCeeEEEEEeC---CCC--ceEEEcCCCCCCCCC-ceEeeeEEEC-CCCcE
Q psy1288 98 ELTKMWDYPKYSSPQRQGDHYFFFHNTGLQNHSVMYIQDS---LDG--EARVFLDPNNLSDDG-TVSLGSYSFS-EDGKT 170 (1012)
Q Consensus 98 ~~~~~~~~~~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~---~~g--~~~~L~D~n~la~~g-~~~i~~~~~S-PDGk~ 170 (1012)
||++++++++.++|.++|+++||+++.+++++..||+++. .++ ++++|+|+|++++++ ++.++.++|| |||++
T Consensus 109 e~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~ 188 (751)
T 2xe4_A 109 EHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDL 188 (751)
T ss_dssp HHHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCE
T ss_pred HHHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCE
Confidence 9999999999999999999999999988888899999986 555 689999999999874 5689999999 99999
Q ss_pred EEEEEeCCCCceEEEEEEECCCC-ceeceeecceeeeeeEEeeCCCeEEEEecCCCCCc-c-----cCCCC-CceEEEEe
Q psy1288 171 LAYCLSSSGSDWTSMHFKDVATG-KEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKS-K-----KHSKK-NRSSAYHL 242 (1012)
Q Consensus 171 iAy~~~~~G~~~~~L~v~dl~tg-~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g-~-----~~~~~-~~~l~~~~ 242 (1012)
|||+.+..|+++++||++|+++| +.+...+... .++++|||||+.|+|++.+..... . ..... ...+++..
T Consensus 189 lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~-~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~ 267 (751)
T 2xe4_A 189 VAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT-NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE 267 (751)
T ss_dssp EEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE-CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC
T ss_pred EEEEEeCCCCceEEEEEEECCCCCEeCCccccCc-eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEec
Confidence 99999999999999999999999 7544444443 478999999999999975421100 0 00000 01122111
Q ss_pred ----------------------e-----------cccc--ce--e-------eeeeecC---CCEEEEEECCC-CCCceE
Q psy1288 243 ----------------------T-----------VNVA--PI--T-------SQYITNE---GPQFVFKTNKD-APNYRL 274 (1012)
Q Consensus 243 ----------------------~-----------~~~~--~i--~-------~~~~s~d---g~~l~~~tn~~-~~~~~L 274 (1012)
. .... .. . ...++++ |++|||++|++ +.+++|
T Consensus 268 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L 347 (751)
T 2xe4_A 268 HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKL 347 (751)
T ss_dssp CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEE
T ss_pred CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEE
Confidence 0 0000 11 1 1224555 99999999987 789999
Q ss_pred EEEeCCCCcccCcEE-eeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEec-------CCCceeeeecCC-ceEEEe
Q psy1288 275 ITIDFDNFAESNWKT-LIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDL-------ASGKHLYTFPLD-VGTIVG 345 (1012)
Q Consensus 275 ~~~dl~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl-------~~G~~~~~l~~~-~~~v~~ 345 (1012)
+.++++++ ..|+. |+++..+..+..+.+.+ +.|++.+..++..+|+++++ ++|+..+.++++ .+.+..
T Consensus 348 ~~~d~~~~--~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~ 424 (751)
T 2xe4_A 348 LIAPRGQP--SDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVH 424 (751)
T ss_dssp EEEETTST--TCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEE
T ss_pred EEEcCCCc--ccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEE
Confidence 99998754 24777 88877665666666654 89999999999999999996 444413556655 233335
Q ss_pred ecc----cccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccCC-CCCCCCCceEEEEEECCCCceEEEEE
Q psy1288 346 FSG----KKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVP-DFDPSLFETKQVFYPSKDGTKIPMFI 420 (1012)
Q Consensus 346 ~~~----spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~-~~~~~~~~~~~v~~~s~DG~~i~~~l 420 (1012)
+++ +++++.++|+++++.+|+++|.+|+ .++ +.+++++...+ .+++..+.++++++++.||.+|++++
T Consensus 425 ~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~-----~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l 497 (751)
T 2xe4_A 425 LVESQMLEYEEPTFRMEYSSLATPNTWFDVSP-----QDH--SRTAVKVREVGGGFDAANYKVERRFATAPDQTKIPLSV 497 (751)
T ss_dssp ECGGGCCCTTCSCEEEEEEETTEEEEEEEECT-----TTC--CEEEEEECCCCTTCCGGGEEEEEEEEECTTCCEEEEEE
T ss_pred eccCcccCCCCCEEEEEEeCCCCCCEEEEEEC-----CCC--cEEEEeccccccCCCccceEEEEEEEECCCCcEEEEEE
Confidence 544 5588899999999999999999999 466 56777775554 67777788999999999999999999
Q ss_pred EEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh-hhhcCCCcchHhHHHHH
Q psy1288 421 LSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD-GGRLLNKQNVFDDFQCA 499 (1012)
Q Consensus 421 ~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~-~~~~~~~~~~~~D~~a~ 499 (1012)
++|++...+++.|+||++|||++....+.|+..... |+++||+|+.+|+||++++|+.|+. .+...++...++|+.++
T Consensus 498 ~~p~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~-l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~ 576 (751)
T 2xe4_A 498 VYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLP-YCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAA 576 (751)
T ss_dssp EEETTSCTTSCCCEEEECCCCTTCCCCCCCCGGGHH-HHTTTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHH
T ss_pred EcCCCCCCCCCccEEEEECCCCCcCCCCcchHHHHH-HHhCCcEEEEEeeCCCCCcCcchhhccccccccCccHHHHHHH
Confidence 999987667889999999999988888888876554 4457999999999999999999999 88777888899999999
Q ss_pred HHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCc
Q psy1288 500 AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPD 579 (1012)
Q Consensus 500 ~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 579 (1012)
+++|++++++++++|+|+|+|+||++++++++++|++|+++|+.+| +.|+..+ +
T Consensus 577 ~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~---~~d~~~~---------------------~-- 630 (751)
T 2xe4_A 577 AEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVP---FVDVMTT---------------------M-- 630 (751)
T ss_dssp HHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESC---CCCHHHH---------------------H--
T ss_pred HHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCC---cchHHhh---------------------h--
Confidence 9999999999999999999999999999999999999999999999 3331100 0
Q ss_pred ccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCC
Q psy1288 580 RKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDR 659 (1012)
Q Consensus 580 ~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~ 659 (1012)
....+|++.. .| .+||+|.+++.++.+..+||+.++. ++++|++|++||.+|.+
T Consensus 631 --~~~~~~~~~~-----------------~~-~~~g~p~~~~~~~~~~~~sp~~~~~------~~~~Pp~Lii~G~~D~~ 684 (751)
T 2xe4_A 631 --CDPSIPLTTG-----------------EW-EEWGNPNEYKYYDYMLSYSPMDNVR------AQEYPNIMVQCGLHDPR 684 (751)
T ss_dssp --TCTTSTTHHH-----------------HT-TTTCCTTSHHHHHHHHHHCTGGGCC------SSCCCEEEEEEETTCSS
T ss_pred --cccCcccchh-----------------hH-HHcCCCCCHHHHHHHHhcChhhhhc------cCCCCceeEEeeCCCCC
Confidence 0011122110 23 4678887777788899999999988 68998899999999999
Q ss_pred CChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 660 VSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 660 v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
|++.++.+++++|+.+ ...+.++++++++++||++.....+..+....+++||.++++.
T Consensus 685 vp~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~ 743 (751)
T 2xe4_A 685 VAYWEPAKWVSKLREC----KTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKS 743 (751)
T ss_dssp SCTHHHHHHHHHHHHH----CCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhc----CCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999987 2224578888999999998765444567778899999999875
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-67 Score=636.32 Aligned_cols=598 Identities=23% Similarity=0.384 Sum_probs=487.6
Q ss_pred cccCccccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCC-CCCCCeeeCCEEEEEEEcCCCC
Q psy1288 50 EYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYP-KYSSPQRQGDHYFFFHNTGLQN 128 (1012)
Q Consensus 50 ~~hG~~~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~-~~s~p~~dG~~~yy~~~~~~~~ 128 (1012)
.-||+++.|||+||||.+++++++||++||++|.++|++.+.+++|+++++++++++ +++.|.+.|+++||.++++.++
T Consensus 14 ~~~~~~~~Dpy~wLEd~~~~~~~~wv~aqN~~T~~~l~~~p~~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~~~~ 93 (711)
T 4hvt_A 14 NNKQIFNPKETKFLEEAEGVEALEWAKERTSKTEKALQAMQEYKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDDKNP 93 (711)
T ss_dssp ------CHHHHGGGGSSSSSHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCSSCS
T ss_pred CCCceeeCCCchhhcCCCCHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHhccccccCCcEEECCEEEEEEecCCCC
Confidence 458999999999999999999999999999999999999999999999999999988 8999999999999999998777
Q ss_pred eeEEEEEeCC------CCceEEEcCCCCCCCC-Cc-eEeeeEE-ECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee
Q psy1288 129 HSVMYIQDSL------DGEARVFLDPNNLSDD-GT-VSLGSYS-FSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV 199 (1012)
Q Consensus 129 ~~~l~~~~~~------~g~~~~L~D~n~la~~-g~-~~i~~~~-~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t 199 (1012)
+ .|||+... +++||+|+|+|+|+++ |. +.+.+.. +||||+++||+++.+|+++..|+++|+++++.+.+.
T Consensus 94 ~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~ 172 (711)
T 4hvt_A 94 Q-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG 172 (711)
T ss_dssp S-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC
T ss_pred c-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC
Confidence 6 99998543 6789999999999977 64 7777777 999999999999999999999999999999988765
Q ss_pred ec-c--------eeeeeeEEeeCCCeEEEEecCCCC---------------CcccCCCCCceEEEEeec-----------
Q psy1288 200 LH-R--------LKFVSIAWTHDHKGVFYSNQEPKS---------------KSKKHSKKNRSSAYHLTV----------- 244 (1012)
Q Consensus 200 ~~-~--------~~~~~~~WSpDG~~l~y~~~~~~~---------------~g~~~~~~~~~l~~~~~~----------- 244 (1012)
+. . ++++.++|. |+++++|.+..+.. .|+ .. ....++|....
T Consensus 173 ~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt-~~-~~~~~v~~~~~~~~~~~~~~~~ 249 (711)
T 4hvt_A 173 FEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITSSLYPNSLYIWKRGE-SI-EKAKKLFEVPKEYIYVSAGKLL 249 (711)
T ss_dssp SCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCTTSSBCEEEEEETTS-CG-GGCEEEEECCTTSCEEEEEESS
T ss_pred cccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCcCCCCCEEEEEECCC-Ch-HHCeEEeccCCCceEEEEEEec
Confidence 54 2 234667997 77788886532211 121 00 01111221100
Q ss_pred ---------------cc----------c---c--ee------eeeeecCCCEEEEEECCC-------CCCceEEEEeCCC
Q psy1288 245 ---------------NV----------A---P--IT------SQYITNEGPQFVFKTNKD-------APNYRLITIDFDN 281 (1012)
Q Consensus 245 ---------------~~----------~---~--i~------~~~~s~dg~~l~~~tn~~-------~~~~~L~~~dl~~ 281 (1012)
+. . + +. ...+...+++|++.+..+ .++++|+.+++++
T Consensus 250 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 329 (711)
T 4hvt_A 250 SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTD 329 (711)
T ss_dssp CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGG
T ss_pred CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCc
Confidence 00 0 0 00 111344567888877432 4789999999987
Q ss_pred Cc-----ccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCc-eeee-ecCC-ceEEEeecccccCc
Q psy1288 282 FA-----ESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGK-HLYT-FPLD-VGTIVGFSGKKKYS 353 (1012)
Q Consensus 282 ~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~-~~~~-l~~~-~~~v~~~~~spdg~ 353 (1012)
+. ..+|+.++++..+..++.+.+.+ +.+++....++.++|+++++.+|+ ..+. +++| .+.+...+.+++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~ 408 (711)
T 4hvt_A 330 LLKTESDKTSLKILFTPTANEVFNFISTTK-DRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEE 408 (711)
T ss_dssp GGSCGGGCTTCEEEECCCTTEEEEEEEECS-SCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCS
T ss_pred ccccccccccceEEECCCCCCeEEEEEEEC-CEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCC
Confidence 53 34689888887788888888877 789999999999999999986664 2344 6666 46676677778899
Q ss_pred EEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccCCCCCCCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCc
Q psy1288 354 EIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNP 433 (1012)
Q Consensus 354 ~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P 433 (1012)
.+++.++++.+|+++|.+|+ . + +.+.++.. ...+++..+.++++++++.||.+|+++++.|++...+++.|
T Consensus 409 ~~~~~~ss~~~P~~~~~~d~-----~-~--~~~~l~~~-~~~~~~~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~P 479 (711)
T 4hvt_A 409 EALITIENSIVPPTIYLWVK-----T-H--ELKIIRKA-LYSFDSENYVLEQKEATSFDGVKIPYFLVYKKGIKFDGKNP 479 (711)
T ss_dssp CEEEEEECSSSCCEEEEECT-----T-S--CEEEEECC-SSCCCGGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCCC
T ss_pred EEEEEEecCCCCCEEEEEeC-----C-C--cEEEEecC-CcccCcccCeeEEEEEECCCCeEEEEEEEecCCCCCCCCcc
Confidence 99999999999999999998 3 4 56677764 34577777889999999999999999999999877778999
Q ss_pred EEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCc
Q psy1288 434 CILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSR 513 (1012)
Q Consensus 434 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~ 513 (1012)
+||++|||++....+.|+....+.+.++||+|+.+|+||++++|..|+..+...++...++|+.++++||++++.++++|
T Consensus 480 ~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~r 559 (711)
T 4hvt_A 480 TLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEY 559 (711)
T ss_dssp EEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGG
T ss_pred EEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999888999877654566689999999999999999999999988889999999999999999999999999
Q ss_pred EEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhh
Q psy1288 514 LAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVH 593 (1012)
Q Consensus 514 i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~ 593 (1012)
|+|+|+|+||++++++++++|++|+++|+.+| +.|
T Consensus 560 I~i~G~S~GG~la~~~a~~~pd~f~a~V~~~p---v~D------------------------------------------ 594 (711)
T 4hvt_A 560 LGIKGGSNGGLLVSVAMTQRPELFGAVACEVP---ILD------------------------------------------ 594 (711)
T ss_dssp EEEEEETHHHHHHHHHHHHCGGGCSEEEEESC---CCC------------------------------------------
T ss_pred EEEEeECHHHHHHHHHHHhCcCceEEEEEeCC---ccc------------------------------------------
Confidence 99999999999999999999999999999999 322
Q ss_pred hhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHH-
Q psy1288 594 KVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL- 672 (1012)
Q Consensus 594 ~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L- 672 (1012)
+..+..+..+..|..+||+|.+++.++.+..+||+.++.. ...+||+|++||.+|++|++.++.+++++|
T Consensus 595 ----~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~-----i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~ 665 (711)
T 4hvt_A 595 ----MIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSL-----TQKYPTVLITDSVLDQRVHPWHGRIFEYVLA 665 (711)
T ss_dssp ----TTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCT-----TSCCCEEEEEEETTCCSSCTHHHHHHHHHHT
T ss_pred ----hhhhhccccchHHHHHhCCCcCHHHHHHHHHcCHHHHHhh-----cCCCCCEEEEecCCCCcCChHHHHHHHHHHH
Confidence 2233333444566678999988888899999999999882 244678999999999999999999999999
Q ss_pred HhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 673 ~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+++ +.++.++++|++||++...........+++++||.++++.
T Consensus 666 ~~~-------g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg~ 708 (711)
T 4hvt_A 666 QNP-------NTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKL 708 (711)
T ss_dssp TCT-------TCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHc-------CCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhCC
Confidence 988 8899999999999999876666677888899999999865
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=398.10 Aligned_cols=521 Identities=15% Similarity=0.121 Sum_probs=374.9
Q ss_pred eeCCE-EEEEEEcCCCCeeEEEEEeCC--C-CceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC-----CCceE
Q psy1288 113 RQGDH-YFFFHNTGLQNHSVMYIQDSL--D-GEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS-----GSDWT 183 (1012)
Q Consensus 113 ~dG~~-~yy~~~~~~~~~~~l~~~~~~--~-g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~-----G~~~~ 183 (1012)
|||++ ++|.... ...||+.+.. + ++.++|+..... .+...+..++|||||++|+|+.... +....
T Consensus 88 PDg~~~la~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAV--GGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBTT----TCCEEEECTTSTTCCCCEECSCCCCS--TTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEECC----CCeEEEEcCCCCCCCCCEeccCCccC--CCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 89999 9987643 2569999886 4 777777762100 0235678999999999999998641 13346
Q ss_pred EEEEEECCC------Cceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec------------
Q psy1288 184 SMHFKDVAT------GKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV------------ 244 (1012)
Q Consensus 184 ~L~v~dl~t------g~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~------------ 244 (1012)
+||++|+++ ++.++++ ........++|||||+.|+|.+.+...... ....++.....
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~----~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW----EGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT----TCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCC----CCcEEEEEEECCCCcccccEEeC
Confidence 999999998 7766555 434445789999999999999754311000 00111111100
Q ss_pred -c-ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCce-------eeeeEEecCCEEEEEEE
Q psy1288 245 -N-VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDV-------LDWATCVANDKLILSYI 315 (1012)
Q Consensus 245 -~-~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~l~~~~~ 315 (1012)
+ ...+..+.|+|||+ ++|.++.+. ..+|+.+++++++ ++.++....... ...+.+.+++.+++...
T Consensus 238 ~~~~~~~~~~~~spdg~-l~~~~~~~~-~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGS-LIVATDRTG-WWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp EETTBCEEEEEECTTSC-EEEEECTTS-SCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred CCCCceEcceEECCCCe-EEEEECCCC-CeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence 0 12233557999999 888888753 5689999986654 556655432210 22334444467777777
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccCCC
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPD 395 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~ 395 (1012)
. +..+|+++++++++ .+.++.+.+.+..+ ++++++.+++..++...|.+||.+|+ +++ +.+.++......
T Consensus 313 ~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~-----~~g--~~~~l~~~~~~~ 382 (662)
T 3azo_A 313 K-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDT-----VTG--RARTIGARHTDP 382 (662)
T ss_dssp S-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEET-----TTC--CEEEEESCCCCS
T ss_pred c-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEEC-----CCC--ceEEeecCCccc
Confidence 7 88899999996555 45666665555444 26788999999999989999999998 456 566666544344
Q ss_pred CCCCCC-ceEEEEEECCCCceEEEEEEEeCCCC----CCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcC
Q psy1288 396 FDPSLF-ETKQVFYPSKDGTKIPMFILSRKGAQ----LDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNI 470 (1012)
Q Consensus 396 ~~~~~~-~~~~v~~~s~DG~~i~~~l~~p~~~~----~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 470 (1012)
+++..+ ..+.+.+.+.||.+|+++++.|++.. ..++.|+||++||+++......|... .+.|+++||+|+.+|+
T Consensus 383 ~~~~~~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~-~~~l~~~G~~v~~~d~ 461 (662)
T 3azo_A 383 VDPAYYPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLD-VAYFTSRGIGVADVNY 461 (662)
T ss_dssp SCGGGSCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHH-HHHHHTTTCEEEEEEC
T ss_pred CCccccCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHH-HHHHHhCCCEEEEECC
Confidence 444444 47889999999999999999998754 45678999999999877666677655 4566668999999999
Q ss_pred CCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccc
Q psy1288 471 RGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEIS 550 (1012)
Q Consensus 471 RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~ 550 (1012)
||++++|..|.......++...++|+.+++++++++..+++++++|+|+|+||++++.++.+ |++|+++++.+| +.
T Consensus 462 rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~---~~ 537 (662)
T 3azo_A 462 GGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYP---VL 537 (662)
T ss_dssp TTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESC---CC
T ss_pred CCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCC---cc
Confidence 99999999998876666667778999999999999988999999999999999999998886 999999999988 33
Q ss_pred cCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccc-cccCCCCChHHHHHHHcC
Q psy1288 551 DCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWE-SDYGSPANSSQFEYLLGY 629 (1012)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~-~~~g~p~~~~~~~~~~~~ 629 (1012)
|+..+. . .... .+. ..+. ..+|.+. +..+.+..+
T Consensus 538 ~~~~~~----------------~-~~~~------------------------~~~--~~~~~~~~~~~~--~~~~~~~~~ 572 (662)
T 3azo_A 538 DLLGWA----------------D-GGTH------------------------DFE--SRYLDFLIGSFE--EFPERYRDR 572 (662)
T ss_dssp CHHHHH----------------T-TCSC------------------------GGG--TTHHHHHTCCTT--TCHHHHHHT
T ss_pred CHHHHh----------------c-cccc------------------------chh--hHhHHHHhCCCc--cchhHHHhh
Confidence 321100 0 0000 000 0000 1133322 334567788
Q ss_pred CcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhh
Q psy1288 630 SPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLT 709 (1012)
Q Consensus 630 sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~ 709 (1012)
+|..++. ++++| +|++||..|.+|++.++.+++++|+.+ +.++.++++++++|++.... ...+.+
T Consensus 573 sp~~~~~------~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~~~~~gH~~~~~~-~~~~~~ 637 (662)
T 3azo_A 573 APLTRAD------RVRVP-FLLLQGLEDPVCPPEQCDRFLEAVAGC-------GVPHAYLSFEGEGHGFRRKE-TMVRAL 637 (662)
T ss_dssp CGGGGGG------GCCSC-EEEEEETTCSSSCTHHHHHHHHHHTTS-------CCCEEEEEETTCCSSCCSHH-HHHHHH
T ss_pred ChHhHhc------cCCCC-EEEEeeCCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEECCCCCCCCChH-HHHHHH
Confidence 9988876 67788 999999999999999999999999988 88999999999999986532 234667
Q ss_pred hHHHHHHHHhCCCC
Q psy1288 710 IPVIYFYLTSGPVL 723 (1012)
Q Consensus 710 ~~~~~fl~~~l~~~ 723 (1012)
..+++||.++++..
T Consensus 638 ~~~~~fl~~~l~~~ 651 (662)
T 3azo_A 638 EAELSLYAQVFGVE 651 (662)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 78889999998763
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=394.15 Aligned_cols=524 Identities=14% Similarity=0.099 Sum_probs=364.9
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCC--CC----------ceEeeeEEECCCCcEEEEEEe
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSD--DG----------TVSLGSYSFSEDGKTLAYCLS 176 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~--~g----------~~~i~~~~~SPDGk~iAy~~~ 176 (1012)
+.++|||++++|.++ ..||+.+..+++.++|+....... .| ......+.|||||++|||...
T Consensus 117 ~~~SPdG~~la~~~~------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 117 VTWSPVGHKLAYVWN------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (740)
T ss_dssp EEECSSTTCEEEEET------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred eEECCCCCEEEEEEC------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE
Confidence 445699999999863 369999988888887765211000 00 001135899999999999864
Q ss_pred CCC-------------------------------CceEEEEEEECCC---C---ceeceee------cceeeeeeEEeeC
Q psy1288 177 SSG-------------------------------SDWTSMHFKDVAT---G---KEYPEVL------HRLKFVSIAWTHD 213 (1012)
Q Consensus 177 ~~G-------------------------------~~~~~L~v~dl~t---g---~~~~~t~------~~~~~~~~~WSpD 213 (1012)
..+ +...+|+++|+++ | +.+++.. .......++||||
T Consensus 191 d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspd 270 (740)
T 4a5s_A 191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ 270 (740)
T ss_dssp ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET
T ss_pred cccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCC
Confidence 322 1234899999999 8 4444433 2223578999999
Q ss_pred CCeEEEEecCCCCCcc-----cCCCC-------CceEEEEeeccccc-----eeeeeeecCCCEEE-EEECCCCCCceEE
Q psy1288 214 HKGVFYSNQEPKSKSK-----KHSKK-------NRSSAYHLTVNVAP-----ITSQYITNEGPQFV-FKTNKDAPNYRLI 275 (1012)
Q Consensus 214 G~~l~y~~~~~~~~g~-----~~~~~-------~~~l~~~~~~~~~~-----i~~~~~s~dg~~l~-~~tn~~~~~~~L~ 275 (1012)
|+.+++...+...... .+.+. ...++ .+..+ .. ...+.|+|||+.|+ +.+++++ ..+|+
T Consensus 271 g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~-~~v~~~~~~~p~fspDG~~l~~~~s~~~G-~~~l~ 347 (740)
T 4a5s_A 271 ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTT-GWVGRFRPSEPHFTLDGNSFYKIISNEEG-YRHIC 347 (740)
T ss_dssp TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSS-SCSSSSSCCCCEECTTSSEEEEEEECTTS-CEEEE
T ss_pred CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCC-ceEccCcCCCceEcCCCCEEEEEEEcCCC-ceEEE
Confidence 9988777654321100 00111 01111 11000 11 12457999999998 6665543 67899
Q ss_pred EEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEc----CceEEEEEEecCCCceeeeecCC----ceEEEeec
Q psy1288 276 TIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIH----HVKNVMHLHDLASGKHLYTFPLD----VGTIVGFS 347 (1012)
Q Consensus 276 ~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~l~~~dl~~G~~~~~l~~~----~~~v~~~~ 347 (1012)
.++++++. .+.|+.. ...+..... .+++.|++.... .+..+|+.+++.+++....++.. .+.+..++
T Consensus 348 ~~~~~~~~---~~~lT~g-~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~ 422 (740)
T 4a5s_A 348 YFQIDKKD---CTFITKG-TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVS 422 (740)
T ss_dssp EEETTCSS---CEESCCS-SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEE
T ss_pred EEECCCCc---eEecccC-CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEE
Confidence 99998765 3555544 344444333 446888888776 35679999999544443356532 24556788
Q ss_pred ccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEecc-C-CCCCCCCC-ceEEEEEECCCCceEEEEEEEeC
Q psy1288 348 GKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIK-V-PDFDPSLF-ETKQVFYPSKDGTKIPMFILSRK 424 (1012)
Q Consensus 348 ~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~-~-~~~~~~~~-~~~~v~~~s~DG~~i~~~l~~p~ 424 (1012)
||||++.+++.+++.. |+.+++++. .+++ ..+++.... . ..+....+ ..+.+.+ +.||..|+++++.|+
T Consensus 423 ~S~dg~~~~~~~s~~~-~p~~~l~~~-----~~~~-~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~dg~~l~~~~~~P~ 494 (740)
T 4a5s_A 423 FSKEAKYYQLRCSGPG-LPLYTLHSS-----VNDK-GLRVLEDNSALDKMLQNVQMPSKKLDFI-ILNETKFWYQMILPP 494 (740)
T ss_dssp ECTTSSEEEEEECSBS-SCEEEEEET-----TTTE-EEEEEECCHHHHHHHTTEECCEEEEEEE-EETTEEEEEEEEECT
T ss_pred ECCCCCEEEEEeCCCC-CCEEEEEEC-----CCCc-EEEEeccChhhhhhhhhccCCccEEEEE-ccCCeEEEEEEEeCC
Confidence 9999999999998876 888999998 3452 234443311 0 11222223 3455666 789999999999999
Q ss_pred CCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHHH-hCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHH
Q psy1288 425 GAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFLR-DFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEY 502 (1012)
Q Consensus 425 ~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~ 502 (1012)
+++..++.|+||++|||++... ...|...+...++ ++||+|+.+|+||+++.|..|........+...++|+.+++++
T Consensus 495 ~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~ 574 (740)
T 4a5s_A 495 HFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQ 574 (740)
T ss_dssp TCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHH
T ss_pred CCCCCCCccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHH
Confidence 8877888999999999976642 3445433444454 5799999999999999999998887777777889999999999
Q ss_pred HHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccc
Q psy1288 503 LIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKI 582 (1012)
Q Consensus 503 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 582 (1012)
|.+.+.+|+++|+|+|+|+||++++.++.++|++|+++++.+| ++|+..+.
T Consensus 575 l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p---~~~~~~~~-------------------------- 625 (740)
T 4a5s_A 575 FSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP---VSRWEYYD-------------------------- 625 (740)
T ss_dssp HHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESC---CCCGGGSB--------------------------
T ss_pred HHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCC---ccchHHhh--------------------------
Confidence 9988889999999999999999999999999999999999999 44321100
Q ss_pred cCCCCcchhhhhhhhhhhccccccccccccc-cCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCC
Q psy1288 583 EGKLPLTQVVHKVLDMLKFNKFTIGYFWESD-YGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVS 661 (1012)
Q Consensus 583 ~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~-~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~ 661 (1012)
. .|.+. .|.|...+..+.+...+|...+. +.+.||+|++||..|..|+
T Consensus 626 --------------------~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~------~i~~~P~Lii~G~~D~~v~ 674 (740)
T 4a5s_A 626 --------------------S-----VYTERYMGLPTPEDNLDHYRNSTVMSRAE------NFKQVEYLLIHGTADDNVH 674 (740)
T ss_dssp --------------------H-----HHHHHHHCCSSTTTTHHHHHHSCSGGGGG------GGGGSEEEEEEETTCSSSC
T ss_pred --------------------h-----HHHHHHcCCCCccccHHHHHhCCHHHHHh------cCCCCcEEEEEcCCCCccC
Confidence 0 00111 24442233445677888887776 5676459999999999999
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 662 PVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 662 ~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+.++.+++++|+.+ +.++.+.++|+++|++.... .....+..+.+||.++++.
T Consensus 675 ~~~~~~l~~~l~~~-------g~~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~fl~~~l~~ 727 (740)
T 4a5s_A 675 FQQSAQISKALVDV-------GVDFQAMWYTDEDHGIASST-AHQHIYTHMSHFIKQCFSL 727 (740)
T ss_dssp THHHHHHHHHHHHT-------TCCCEEEEETTCCTTCCSHH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC-------CCCeEEEEECCCCCcCCCCc-cHHHHHHHHHHHHHHHcCC
Confidence 99999999999998 88999999999999984432 2345667788999999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=359.08 Aligned_cols=511 Identities=15% Similarity=0.167 Sum_probs=349.6
Q ss_pred HHHHHHHhhcccCCCCC-CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCc-eEeeeEEECCCCcE
Q psy1288 93 DKVKAELTKMWDYPKYS-SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGT-VSLGSYSFSEDGKT 170 (1012)
Q Consensus 93 ~~l~~~~~~~~~~~~~s-~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~-~~i~~~~~SPDGk~ 170 (1012)
.++.+.+.++...+-++ ..+|||++++|..... +...||.. .+++.++|+. +. ..+..+.|||| +
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~--g~~~lw~~--~~g~~~~lt~-------~~~~~~~~~~~spd--~ 76 (582)
T 3o4h_A 10 SRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSE--GSVNAYLY--DGGETVKLNR-------EPINSVLDPHYGVG--R 76 (582)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEET--TEEEEEEE--ETTEEEECCS-------SCCSEECEECTTCS--E
T ss_pred HHHHHHHHHHhccchheeecCCCCCeEEEEEccC--CceeEEEE--cCCCcEeeec-------ccccccccccCCCC--e
Confidence 44555555554444333 2469999999998744 35789986 3567777776 33 36788999999 7
Q ss_pred EEEEEeC-CCCceEEEEEEEC--CCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc-
Q psy1288 171 LAYCLSS-SGSDWTSMHFKDV--ATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV- 246 (1012)
Q Consensus 171 iAy~~~~-~G~~~~~L~v~dl--~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~- 246 (1012)
++|+.+. .|.+..+||.+++ +++.. +++.... ....+|||||+.++|++.... ... ++....+.
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~-~~~~~~s~dg~~~~~~s~~~~---------~~~-l~d~~~g~~ 144 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKP-MRILSGVDTGEAVVFTGATED---------RVA-LYALDGGGL 144 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCS-BEEEEEEECSSCEEEEEECSS---------CEE-EEEEETTEE
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-cccCCCC-ceeeeeCCCCCeEEEEecCCC---------Cce-EEEccCCcE
Confidence 8888885 5666779999999 66554 3322222 245799999999998864311 111 22211100
Q ss_pred ------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceE
Q psy1288 247 ------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKN 320 (1012)
Q Consensus 247 ------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (1012)
.. ....|||||+.|++.+++......|+.+|+++++ .+.|..+. ..+......+||+.|+ ....++..
T Consensus 145 ~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~---~~~l~~~~-~~~~~~~~SpDG~~l~-~~~~~~~~ 218 (582)
T 3o4h_A 145 RELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG---LRVFDSGE-GSFSSASISPGMKVTA-GLETAREA 218 (582)
T ss_dssp EEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---CEEECCSS-CEEEEEEECTTSCEEE-EEECSSCE
T ss_pred EEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---ceEeecCC-CccccceECCCCCEEE-EccCCCee
Confidence 11 2446999999999988765444679999998766 45554432 3333333345655666 55566677
Q ss_pred EEEEEecCCCceeeeecCCceEEEeec--------ccccCcEEEEEe---------------------------------
Q psy1288 321 VMHLHDLASGKHLYTFPLDVGTIVGFS--------GKKKYSEIFYSF--------------------------------- 359 (1012)
Q Consensus 321 ~l~~~dl~~G~~~~~l~~~~~~v~~~~--------~spdg~~l~~~~--------------------------------- 359 (1012)
+|+++++++|+.. .++.....+..+. |+||| .++++.
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~g~~~~~~~~~v~~~~~sdg~~l 296 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLV 296 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEETTEEECCCSSEEEEEEEETTEEE
T ss_pred EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEECCeeccCCCceEEEEecCCEEE
Confidence 9999999776654 3332222222233 66666 344333
Q ss_pred ---cCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccCCCCCC----CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCC
Q psy1288 360 ---MSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVPDFDP----SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNN 432 (1012)
Q Consensus 360 ---ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~~~~----~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~ 432 (1012)
++..+|.++|.+|+. + +.+.| .+++ .....+.+.+++.||.+|+++++.|++.. .+.
T Consensus 297 ~~~s~~~~p~~l~~~d~~------~--~~~~l------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~p~~~~--~~~ 360 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSG------E--PLLEG------GLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAP--TPG 360 (582)
T ss_dssp EEEEETTEEEEEEEETTC------C--EEECC------CCCHHHHHTEEEEEEEEEECTTSCEEEEEEEEETTSC--SSE
T ss_pred EEEcCCCCCCeEEEEcCC------C--ceEEE------ecCCccccccCcceEEEEECCCCCEEEEEEEcCCCCC--CCC
Confidence 333334444444431 1 11111 1222 22356889999999999999999998753 378
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
|+||++||++.......|... .+.|+++||.|+.+|+||++++|..|............++|+.++++++.++..++
T Consensus 361 p~vv~~HG~~~~~~~~~~~~~-~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d-- 437 (582)
T 3o4h_A 361 PTVVLVHGGPFAEDSDSWDTF-AASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS-- 437 (582)
T ss_dssp EEEEEECSSSSCCCCSSCCHH-HHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--
T ss_pred cEEEEECCCcccccccccCHH-HHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--
Confidence 999999998776656667654 45566689999999999999999999888777777788999999999999997766
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhh
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVV 592 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~ 592 (1012)
+++++|+|+||++++.++.++|++|+++++.+| +.++..++ . .. + ..
T Consensus 438 ~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~---~~~~~~~~----------------~--~~-~-------~~---- 484 (582)
T 3o4h_A 438 ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGAS---VVDWEEMY----------------E--LS-D-------AA---- 484 (582)
T ss_dssp EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESC---CCCHHHHH----------------H--TC-C-------HH----
T ss_pred eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCC---ccCHHHHh----------------h--cc-c-------ch----
Confidence 999999999999999999999999999999988 43321100 0 00 0 00
Q ss_pred hhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHH
Q psy1288 593 HKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATL 672 (1012)
Q Consensus 593 ~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L 672 (1012)
...+. ...+| ...+.+..++|..++. +++.| +|++||..|..|++.++.+++++|
T Consensus 485 --~~~~~-----------~~~~~-----~~~~~~~~~sp~~~~~------~i~~P-~lii~G~~D~~v~~~~~~~~~~~l 539 (582)
T 3o4h_A 485 --FRNFI-----------EQLTG-----GSREIMRSRSPINHVD------RIKEP-LALIHPQNASRTPLKPLLRLMGEL 539 (582)
T ss_dssp --HHHHH-----------HHHTT-----TCHHHHHHTCGGGGGG------GCCSC-EEEEEETTCSSSCHHHHHHHHHHH
T ss_pred --hHHHH-----------HHHcC-----cCHHHHHhcCHHHHHh------cCCCC-EEEEecCCCCCcCHHHHHHHHHHH
Confidence 00000 01122 2345578889988776 67777 999999999999999999999999
Q ss_pred HhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 673 QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 673 ~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
+.+ +.++.++++|+++|++.... ...+.+..+++||.++++
T Consensus 540 ~~~-------g~~~~~~~~~~~gH~~~~~~-~~~~~~~~i~~fl~~~l~ 580 (582)
T 3o4h_A 540 LAR-------GKTFEAHIIPDAGHAINTME-DAVKILLPAVFFLATQRE 580 (582)
T ss_dssp HHT-------TCCEEEEEETTCCSSCCBHH-HHHHHHHHHHHHHHHHHT
T ss_pred HhC-------CCCEEEEEECCCCCCCCChH-HHHHHHHHHHHHHHHHcC
Confidence 998 88999999999999987322 234667778899998865
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=369.50 Aligned_cols=516 Identities=14% Similarity=0.068 Sum_probs=353.6
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCC---CCC---------ceEeeeEEECCCCcEEEEEEe
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS---DDG---------TVSLGSYSFSEDGKTLAYCLS 176 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la---~~g---------~~~i~~~~~SPDGk~iAy~~~ 176 (1012)
..++|||++++|.++ ..|++.+..+++..+++...... .+. ......++|||||++|||...
T Consensus 115 ~~~SPDG~~la~~~~------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~ 188 (719)
T 1z68_A 115 LCWSPVGSKLAYVYQ------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF 188 (719)
T ss_dssp EEECSSTTCEEEEET------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred ceECCCCCEEEEEEC------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence 345699999999852 26888888777777776421100 000 001147999999999999876
Q ss_pred CCC-----------------------------CceEEEEEEECCCCcee---ceee------cceeeeeeEEeeCCCeEE
Q psy1288 177 SSG-----------------------------SDWTSMHFKDVATGKEY---PEVL------HRLKFVSIAWTHDHKGVF 218 (1012)
Q Consensus 177 ~~G-----------------------------~~~~~L~v~dl~tg~~~---~~t~------~~~~~~~~~WSpDG~~l~ 218 (1012)
..+ ....+|+++|+++++.+ ++.. .......++|||||+ ++
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~ 267 (719)
T 1z68_A 189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VC 267 (719)
T ss_dssp ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EE
T ss_pred CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EE
Confidence 432 12348999999998742 2211 222357899999975 55
Q ss_pred EEec-CCCCCcccCCCCCceEEEEe----ec-------------c-cccee-----eeeeecCCCEEEEEECCCCCCceE
Q psy1288 219 YSNQ-EPKSKSKKHSKKNRSSAYHL----TV-------------N-VAPIT-----SQYITNEGPQFVFKTNKDAPNYRL 274 (1012)
Q Consensus 219 y~~~-~~~~~g~~~~~~~~~l~~~~----~~-------------~-~~~i~-----~~~~s~dg~~l~~~tn~~~~~~~L 274 (1012)
|+.. +.. ....++... .. . ...+. .+.|+|||+.|++.+.......+|
T Consensus 268 ~~~~~~~~--------~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l 339 (719)
T 1z68_A 268 LQWLKRVQ--------NVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHI 339 (719)
T ss_dssp EEEEESST--------TEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEE
T ss_pred EEEecccc--------CeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEE
Confidence 6532 211 011122111 00 0 01122 456999999998865544446789
Q ss_pred EEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEc----CceEEEEEEecCCCc-eeeeecC----CceEEEe
Q psy1288 275 ITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIH----HVKNVMHLHDLASGK-HLYTFPL----DVGTIVG 345 (1012)
Q Consensus 275 ~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~l~~~dl~~G~-~~~~l~~----~~~~v~~ 345 (1012)
+.+++++++ .+.|... ...+.....+ +++.+++.... .+..+|+.+++.+|. ..+.++. ....+..
T Consensus 340 ~~~~~~~~~---~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~ 414 (719)
T 1z68_A 340 HYIKDTVEN---AIQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT 414 (719)
T ss_dssp EEESSCSTT---CEECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE
T ss_pred EEEECCCCc---eEecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE
Confidence 999987654 3555543 3344443444 76888888766 466789999885553 2234442 2234456
Q ss_pred ecccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccC--CCCCCCCC-ceEEEEEECCCCceEEEEEEE
Q psy1288 346 FSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKV--PDFDPSLF-ETKQVFYPSKDGTKIPMFILS 422 (1012)
Q Consensus 346 ~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~-~~~~v~~~s~DG~~i~~~l~~ 422 (1012)
+++++|++.+++.+++...| .++++|+ ++|+ ..+++..... ..++...+ ..+.+.+++.| .+|.++++.
T Consensus 415 ~~~s~dg~~l~~~~s~~~~p-~~~l~d~-----~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 486 (719)
T 1z68_A 415 ASFSDYAKYYALVCYGPGIP-ISTLHDG-----RTDQ-EIKILEENKELENALKNIQLPKEEIKKLEVDE-ITLWYKMIL 486 (719)
T ss_dssp EEECGGGSSEEEEECCBSSC-EEEEECS-----SSCC-EEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EEEEEEEEE
T ss_pred EEECCCCCEEEEEcCCCCCC-eEEEEEC-----CCCC-EEEEeecchhhhhhhccccCCceEEEEEecCC-eEEEEEEEe
Confidence 78899999999998888777 5888998 4562 2344443211 12333334 56888999888 999999999
Q ss_pred eCCCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHH-HhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHH
Q psy1288 423 RKGAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFL-RDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAA 500 (1012)
Q Consensus 423 p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l-~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~ 500 (1012)
|++....++.|+||++||+.+... ...|...+...+ +++||+|+.+|+||+++.+..|.......++...++|+.+++
T Consensus 487 P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~ 566 (719)
T 1z68_A 487 PPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAV 566 (719)
T ss_dssp CTTCCSSSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHH
T ss_pred CCCCCCCCCccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHH
Confidence 998766778999999999986653 334543334444 467999999999999999998887766666667789999999
Q ss_pred HHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcc
Q psy1288 501 EYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDR 580 (1012)
Q Consensus 501 ~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 580 (1012)
+++.++..+++++++++|+|+||++++.++.++|++|+++++.+| +.++..+. .
T Consensus 567 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~---~~~~~~~~----------------------~- 620 (719)
T 1z68_A 567 RKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP---VSSWEYYA----------------------S- 620 (719)
T ss_dssp HHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESC---CCCTTTSB----------------------H-
T ss_pred HHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCC---ccChHHhc----------------------c-
Confidence 999998888999999999999999999999999999999999988 33321000 0
Q ss_pred cccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCC
Q psy1288 581 KIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRV 660 (1012)
Q Consensus 581 ~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v 660 (1012)
. +. ...+|.|...+..+.+...+|...+. +.+.||+|++||..|.+|
T Consensus 621 --------------~-----~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~P~li~~G~~D~~v 667 (719)
T 1z68_A 621 --------------V-----YT--------ERFMGLPTKDDNLEHYKNSTVMARAE------YFRNVDYLLIHGTADDNV 667 (719)
T ss_dssp --------------H-----HH--------HHHHCCSSTTTTHHHHHHTCSGGGGG------GGTTSEEEEEEETTCSSS
T ss_pred --------------c-----cc--------hhhcCCcccccchhhhhhCCHhHHHh------cCCCCcEEEEEeCCCCCc
Confidence 0 00 00123332222334566778877666 677755999999999999
Q ss_pred ChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 661 SPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 661 ~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
++.++.+++++|+.+ +.++.+.++++++|++.. .........+.+||.+++
T Consensus 668 ~~~~~~~~~~~l~~~-------~~~~~~~~~~~~gH~~~~--~~~~~~~~~i~~fl~~~l 718 (719)
T 1z68_A 668 HFQNSAQIAKALVNA-------QVDFQAMWYSDQNHGLSG--LSTNHLYTHMTHFLKQCF 718 (719)
T ss_dssp CTHHHHHHHHHHHHT-------TCCCEEEEETTCCTTCCT--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-------CCceEEEEECcCCCCCCc--ccHHHHHHHHHHHHHHhh
Confidence 999999999999988 889999999999999832 223455667788998875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=359.03 Aligned_cols=517 Identities=15% Similarity=0.152 Sum_probs=351.3
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCC-----CceEEEcCCCCCC--------CCCceEeeeEEECCCCcEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLD-----GEARVFLDPNNLS--------DDGTVSLGSYSFSEDGKTLAYCL 175 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~-----g~~~~L~D~n~la--------~~g~~~i~~~~~SPDGk~iAy~~ 175 (1012)
..++|||++++|.++ ..||+.+..+ ++...++....-. +++...+..+.|||||++|||..
T Consensus 126 ~~~SpdG~~la~~~~------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~ 199 (706)
T 2z3z_A 126 LDFSPVGDRVAYVRN------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYR 199 (706)
T ss_dssp CEECTTSSEEEEEET------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEE
T ss_pred CcCCCCCCEEEEEEC------CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEE
Confidence 345699999999642 3588888776 7767665522100 00001146899999999999987
Q ss_pred eCC----------------------------CCceEEEEEEECCCCceeceeec---ceeeeeeEEeeCCCeEEEEecCC
Q psy1288 176 SSS----------------------------GSDWTSMHFKDVATGKEYPEVLH---RLKFVSIAWTHDHKGVFYSNQEP 224 (1012)
Q Consensus 176 ~~~----------------------------G~~~~~L~v~dl~tg~~~~~t~~---~~~~~~~~WSpDG~~l~y~~~~~ 224 (1012)
... +....+|+++|+++++..+.... ......++|||||+.|++...+.
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 279 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR 279 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence 321 12346899999999987654422 22356899999999999976432
Q ss_pred CC-Ccc-----cCCCCCceEEEEeeccc--cceeeeeeec--CCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccC
Q psy1288 225 KS-KSK-----KHSKKNRSSAYHLTVNV--APITSQYITN--EGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEEN 294 (1012)
Q Consensus 225 ~~-~g~-----~~~~~~~~l~~~~~~~~--~~i~~~~~s~--dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~ 294 (1012)
.. ... ...+.....+....... ..+....|+| ||+ +++.++++ ...+|+.++.++.. .+.|..+
T Consensus 280 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~-g~~~l~~~~~~~~~---~~~l~~~- 353 (706)
T 2z3z_A 280 AQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRD-GWNHLYLYDTTGRL---IRQVTKG- 353 (706)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTT-SSCEEEEEETTSCE---EEECCCS-
T ss_pred CCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccC-CccEEEEEECCCCE---EEecCCC-
Confidence 11 000 01110111111111000 0112235899 887 55566554 35789999865433 3444433
Q ss_pred CCceeeeeE-EecCCEEEEEEEcCc--eEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEE
Q psy1288 295 KDDVLDWAT-CVANDKLILSYIHHV--KNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 295 ~~~~~~~~~-~~~~~~l~~~~~~~g--~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
...+..... ..+++.|++....++ ..+|+.+++.+++. ..++.. ..+..++|||||+.+++..++...|.+++++
T Consensus 354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~ 431 (706)
T 2z3z_A 354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLTPE-SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVT 431 (706)
T ss_dssp SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESCCS-SSEEEEEECTTSSEEEEEEECSSCSCEEEEE
T ss_pred CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eeccCC-CceEEEEECCCCCEEEEEecCCCCCcEEEEE
Confidence 233333222 345567887776655 46899999976653 445432 3355788999999999999999999999999
Q ss_pred eCCCCCCCCCCcceEEEEeccCCCCCCCC-CceEEEEEECCCC-ceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-C
Q psy1288 372 NIPARVDPNSKLETSIFREIKVPDFDPSL-FETKQVFYPSKDG-TKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-P 448 (1012)
Q Consensus 372 d~~~~~~~~g~~~~~~l~~~~~~~~~~~~-~~~~~v~~~s~DG-~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~ 448 (1012)
|+ .++ +.+.++.. . .+.... ...+.+.+.+.|| .++.++++.|++++..++.|+||++|||+..... .
T Consensus 432 d~-----~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~ 502 (706)
T 2z3z_A 432 NI-----GKG--SHTLLEAK-N-PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTK 502 (706)
T ss_dssp ES-----SSC--EEEEEECC--------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCS
T ss_pred EC-----CCC--eEeecccc-c-hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeecc
Confidence 99 355 33444432 1 122222 2467888999999 8999999999987666778999999998765532 3
Q ss_pred CcChh---HHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHH
Q psy1288 449 GFSVT---KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLL 525 (1012)
Q Consensus 449 ~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l 525 (1012)
.|... +.+.|+++||.|+.+|+||.++.+..+.......++...++|+.++++++.+.+.+++++++++|+|+||++
T Consensus 503 ~~~~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~ 582 (706)
T 2z3z_A 503 TWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFM 582 (706)
T ss_dssp CC----CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHH
T ss_pred ccccCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHH
Confidence 45443 456777789999999999999999888776666666677899999999999888888999999999999999
Q ss_pred HHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccc
Q psy1288 526 TAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFT 605 (1012)
Q Consensus 526 ~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~ 605 (1012)
++.++.++|++|+++|+.+| +.++..+. .
T Consensus 583 a~~~a~~~p~~~~~~v~~~~---~~~~~~~~----------------------------------------------~-- 611 (706)
T 2z3z_A 583 TTNLMLTHGDVFKVGVAGGP---VIDWNRYA----------------------------------------------I-- 611 (706)
T ss_dssp HHHHHHHSTTTEEEEEEESC---CCCGGGSB----------------------------------------------H--
T ss_pred HHHHHHhCCCcEEEEEEcCC---ccchHHHH----------------------------------------------h--
Confidence 99999999999999999988 33321000 0
Q ss_pred ccccccc-ccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCC
Q psy1288 606 IGYFWES-DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTN 684 (1012)
Q Consensus 606 ~g~~~~~-~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~ 684 (1012)
.+.+ ..+.|.. ..+.+...+|...+. +++.| +|++||..|..|++.++.+++++|..+ +.
T Consensus 612 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~-------~~ 672 (706)
T 2z3z_A 612 ---MYGERYFDAPQE--NPEGYDAANLLKRAG------DLKGR-LMLIHGAIDPVVVWQHSLLFLDACVKA-------RT 672 (706)
T ss_dssp ---HHHHHHHCCTTT--CHHHHHHHCGGGGGG------GCCSE-EEEEEETTCSSSCTHHHHHHHHHHHHH-------TC
T ss_pred ---hhhhhhcCCccc--ChhhhhhCCHhHhHH------hCCCC-EEEEeeCCCCCCCHHHHHHHHHHHHHC-------CC
Confidence 0000 1123321 123355667776665 56777 999999999999999999999999988 88
Q ss_pred cEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 685 PLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 685 ~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
++.+.++|+++|++... ........+.+||.+++
T Consensus 673 ~~~~~~~~~~gH~~~~~--~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 673 YPDYYVYPSHEHNVMGP--DRVHLYETITRYFTDHL 706 (706)
T ss_dssp CCEEEEETTCCSSCCTT--HHHHHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCCCCcc--cHHHHHHHHHHHHHHhC
Confidence 89999999999998654 23456677788998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=361.80 Aligned_cols=516 Identities=16% Similarity=0.144 Sum_probs=354.0
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCC--CC--------CceEeeeEEECCCCcEEEEEEeCCC
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS--DD--------GTVSLGSYSFSEDGKTLAYCLSSSG 179 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la--~~--------g~~~i~~~~~SPDGk~iAy~~~~~G 179 (1012)
.++|||++++|.+. ..||+.+..+++..+++....-. .+ ....+..+.|||||++|+|.....+
T Consensus 158 ~~SPDG~~la~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~ 231 (741)
T 2ecf_A 158 KLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES 231 (741)
T ss_dssp EECTTSSEEEEEET------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT
T ss_pred cCCCCCCEEEEEeC------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC
Confidence 45699999999863 26888888877777766521100 00 0001467999999999999875432
Q ss_pred ----------------------------CceEEEEEEECCC-Cceeceeec---ceeeeeeEEeeCCCeEEEEecCCC-C
Q psy1288 180 ----------------------------SDWTSMHFKDVAT-GKEYPEVLH---RLKFVSIAWTHDHKGVFYSNQEPK-S 226 (1012)
Q Consensus 180 ----------------------------~~~~~L~v~dl~t-g~~~~~t~~---~~~~~~~~WSpDG~~l~y~~~~~~-~ 226 (1012)
+...+|+++|+++ ++.+..... ......++| |||+.|++...+.. .
T Consensus 232 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 232 PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 1234899999999 886554322 233578999 99999999864211 1
Q ss_pred Ccc-----cCCCCCceEEEEeeccc--cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCcee
Q psy1288 227 KSK-----KHSKKNRSSAYHLTVNV--APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVL 299 (1012)
Q Consensus 227 ~g~-----~~~~~~~~l~~~~~~~~--~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~ 299 (1012)
... ...+. ...+....... ..+....|+|||+ +++.++.+. ..+|+.+++++. .+.+..+. ..+.
T Consensus 311 ~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g-~~~l~~~~~~~~----~~~l~~~~-~~v~ 382 (741)
T 2ecf_A 311 KLDLVEVTLASNQ-QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG-FQHLYRIDSKGK----AAALTHGN-WSVD 382 (741)
T ss_dssp EEEEEEEETTTCC-EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS-SCEEEEECSSSC----EEESCCSS-SCEE
T ss_pred eEEEEEEECCCCc-eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC-ccEEEEEcCCCC----eeeeeecc-eEEE
Confidence 000 01111 11111111000 0122446999998 667776543 478999987542 34554432 3333
Q ss_pred eee-EEecCCEEEEEEEcCc--eEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCCCC
Q psy1288 300 DWA-TCVANDKLILSYIHHV--KNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPAR 376 (1012)
Q Consensus 300 ~~~-~~~~~~~l~~~~~~~g--~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~ 376 (1012)
... ...+++.+++....++ ..+||.++. +|+....++.. ..+..++|||||+.+++.+++...|+++++++..
T Consensus 383 ~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~-~g~~~~~l~~~-~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~-- 458 (741)
T 2ecf_A 383 ELLAVDEKAGLAYFRAGIESARESQIYAVPL-QGGQPQRLSKA-PGMHSASFARNASVYVDSWSNNSTPPQIELFRAN-- 458 (741)
T ss_dssp EEEEEETTTTEEEEEECSSCTTCBEEEEEET-TCCCCEECCCS-CSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT--
T ss_pred eEeEEeCCCCEEEEEEeCCCCceEEEEEEEc-CCCCeeecccC-CCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC--
Confidence 332 3456567888777665 567777776 35544555543 3345778999999999999999999999999982
Q ss_pred CCCCCCcceEEEEeccC-C---CCCCC--CC-ceEEEEEECCCC-ceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-C
Q psy1288 377 VDPNSKLETSIFREIKV-P---DFDPS--LF-ETKQVFYPSKDG-TKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-Q 447 (1012)
Q Consensus 377 ~~~~g~~~~~~l~~~~~-~---~~~~~--~~-~~~~v~~~s~DG-~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~ 447 (1012)
++ ..+.++.... . .+.+. .+ ..+.+.+++.|| ..|.++++.|++....++.|+||++||++.... .
T Consensus 459 ---~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~ 533 (741)
T 2ecf_A 459 ---GE--KIATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVT 533 (741)
T ss_dssp ---SC--EEECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCS
T ss_pred ---CC--eEEEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCccccc
Confidence 33 3333332211 0 11111 33 578899999999 999999999987655677899999999876542 2
Q ss_pred CCcCh----hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHH
Q psy1288 448 PGFSV----TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGG 523 (1012)
Q Consensus 448 ~~~~~----~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG 523 (1012)
..|.. .....|+++||.|+.+|+||.++.+..|.......++...++|+.++++++.+++.+++++++++|+|+||
T Consensus 534 ~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG 613 (741)
T 2ecf_A 534 DSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGG 613 (741)
T ss_dssp SCCCCSHHHHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHH
T ss_pred ccccccchhHHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHH
Confidence 33442 24566777899999999999999988887766666666778999999999999888889999999999999
Q ss_pred HHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccc
Q psy1288 524 LLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNK 603 (1012)
Q Consensus 524 ~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~ 603 (1012)
++++.++.++|++|+++++.+| +.++..+ +.
T Consensus 614 ~~a~~~a~~~p~~~~~~v~~~~---~~~~~~~-----------------------------------------~~----- 644 (741)
T 2ecf_A 614 YMTLMLLAKASDSYACGVAGAP---VTDWGLY-----------------------------------------DS----- 644 (741)
T ss_dssp HHHHHHHHHCTTTCSEEEEESC---CCCGGGS-----------------------------------------BH-----
T ss_pred HHHHHHHHhCCCceEEEEEcCC---Ccchhhh-----------------------------------------cc-----
Confidence 9999999999999999999988 3321100 00
Q ss_pred ccccccccc-ccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCC
Q psy1288 604 FTIGYFWES-DYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQ 682 (1012)
Q Consensus 604 ~~~g~~~~~-~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~ 682 (1012)
.+.. .++.+. ...+.+...+|...+. +++.| +|++||..|..|++.++.+++++|..+
T Consensus 645 -----~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~i~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~------- 703 (741)
T 2ecf_A 645 -----HYTERYMDLPA--RNDAGYREARVLTHIE------GLRSP-LLLIHGMADDNVLFTNSTSLMSALQKR------- 703 (741)
T ss_dssp -----HHHHHHHCCTG--GGHHHHHHHCSGGGGG------GCCSC-EEEEEETTCSSSCTHHHHHHHHHHHHT-------
T ss_pred -----ccchhhcCCcc--cChhhhhhcCHHHHHh------hCCCC-EEEEccCCCCCCCHHHHHHHHHHHHHC-------
Confidence 0000 012222 1234456678877666 57777 999999999999999999999999988
Q ss_pred CCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 683 TNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 683 ~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
+.++.+.++++++|++..... .+....+.+||.++++
T Consensus 704 ~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 704 GQPFELMTYPGAKHGLSGADA--LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp TCCCEEEEETTCCSSCCHHHH--HHHHHHHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCCCCCch--hHHHHHHHHHHHHhcC
Confidence 888999999999999864322 3556777899988764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=363.71 Aligned_cols=523 Identities=14% Similarity=0.115 Sum_probs=342.6
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCc---------------eEeeeEEECCCCcEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGT---------------VSLGSYSFSEDGKTLAY 173 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~---------------~~i~~~~~SPDGk~iAy 173 (1012)
..++|||++++|.+. ..||+.+..+++..+++..... +. .....+.|||||++|||
T Consensus 119 ~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~~~~~~---~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~ 189 (723)
T 1xfd_A 119 AGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVVSTGKE---GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAY 189 (723)
T ss_dssp CCBCSSTTCEEEEET------TEEEEESSSSSCCEEEECCCBT---TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEE
T ss_pred cEECCCCCEEEEEEC------CeEEEEECCCCceEEEecCCCC---CceECcccceeEEEEeccCcceEEECCCCCEEEE
Confidence 456799999999874 2699998888877777652110 10 01257999999999999
Q ss_pred EEeCCC-----------------------------CceEEEEEEECCCCce-eceeec------ceeeeeeEEeeCCCeE
Q psy1288 174 CLSSSG-----------------------------SDWTSMHFKDVATGKE-YPEVLH------RLKFVSIAWTHDHKGV 217 (1012)
Q Consensus 174 ~~~~~G-----------------------------~~~~~L~v~dl~tg~~-~~~t~~------~~~~~~~~WSpDG~~l 217 (1012)
.....+ +...+|+++|+++++. +.++.. ......++|||||+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l 269 (723)
T 1xfd_A 190 AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVA 269 (723)
T ss_dssp EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred EEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEE
Confidence 875431 1235899999999874 333322 2335779999999988
Q ss_pred EEEecCCCCCcc-----cCCCCCceEEEEeeccccce----eeeeeecCCCEEEEE-ECCCC---CCceEEEEe-CCCCc
Q psy1288 218 FYSNQEPKSKSK-----KHSKKNRSSAYHLTVNVAPI----TSQYITNEGPQFVFK-TNKDA---PNYRLITID-FDNFA 283 (1012)
Q Consensus 218 ~y~~~~~~~~g~-----~~~~~~~~l~~~~~~~~~~i----~~~~~s~dg~~l~~~-tn~~~---~~~~L~~~d-l~~~~ 283 (1012)
++...+...... ...+. ...+...... ..+ ....|+|||+.|++. ++++. ...+|+.+| ..++.
T Consensus 270 ~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 270 VTWLNRAQNVSILTLCDATTGV-CTKKHEDESE-AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp EEEEETTSCEEEEEEEETTTCC-EEEEEEEECS-SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS
T ss_pred EEEEcCCCCeEEEEEEeCCCCc-ceEEEEeccC-CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC
Confidence 776544211110 01111 1111111000 111 144699999999998 54433 256899998 44332
Q ss_pred ccCcEEeeccCCCceeeee-EEecCCEEEEEEEcC--ceEEEEEEecCCCceeeeecC---CceEEEeecccccCcEEEE
Q psy1288 284 ESNWKTLIEENKDDVLDWA-TCVANDKLILSYIHH--VKNVMHLHDLASGKHLYTFPL---DVGTIVGFSGKKKYSEIFY 357 (1012)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~~~l~~~dl~~G~~~~~l~~---~~~~v~~~~~spdg~~l~~ 357 (1012)
....+.|... ...+.... ...+++.|++....+ +..+|+.+++.++.....++. +.+.+..++++|||+.+++
T Consensus 348 ~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 348 NDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp SCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred ccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 0002334322 23333322 345667888777665 567788888744323344443 2344556789999999999
Q ss_pred EecCCCCCcEEEEEeCCCCCCCCCCcceEEEEecc-C-CCCCCCCC-ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcE
Q psy1288 358 SFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIK-V-PDFDPSLF-ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPC 434 (1012)
Q Consensus 358 ~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~-~-~~~~~~~~-~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~ 434 (1012)
.+++...|..++ ++. .+++ +...+.... . ..+....+ ..+.+.+.+.|| +|.++++.|+++...++.|+
T Consensus 427 ~~~~~~~p~~~~-~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~P~~~~~~~~~p~ 498 (723)
T 1xfd_A 427 KCEGPGVPMVTV-HNT-----TDKK-KMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILKPATFTDTTHYPL 498 (723)
T ss_dssp ECCSSSSCCEEE-EET-----TTCC-EEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEBCSSCCSSSCEEE
T ss_pred EccCCCCCeEEE-EEC-----CCCC-EEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEeCCCCCCCCccCE
Confidence 999998887655 465 2332 333443211 0 00112222 467778889999 99999999998766788999
Q ss_pred EEEEcCCCCCCC-CCCcCh-hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 435 ILYGYGGFAVSL-QPGFSV-TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 435 vv~~hGg~~~~~-~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
||++||+++... ...|.. ....+++++||+|+.+|+||++++|..|........+...++|+.++++++.+++.++++
T Consensus 499 vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~ 578 (723)
T 1xfd_A 499 LLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRT 578 (723)
T ss_dssp EEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEE
T ss_pred EEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChh
Confidence 999999876532 333432 234567767999999999999999988876665556667789999999999988878899
Q ss_pred cEEEEecChHHHHHHHHHhhC----CCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCc
Q psy1288 513 RLAIQGGSNGGLLTAACINQR----PDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPL 588 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~pl 588 (1012)
+++++|+|+||++++.++.++ |++|+++++..| +.++..+. ..
T Consensus 579 ~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~---~~~~~~~~----------------------~~-------- 625 (723)
T 1xfd_A 579 RVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP---ITDFKLYA----------------------SA-------- 625 (723)
T ss_dssp EEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESC---CCCTTSSB----------------------HH--------
T ss_pred hEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccC---CcchHHhh----------------------hh--------
Confidence 999999999999999999998 999999999988 33321100 00
Q ss_pred chhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCC-CCcEEEEeeCCCCCCChHHHHH
Q psy1288 589 TQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQ-YPATLLMTADHDDRVSPVHSLK 667 (1012)
Q Consensus 589 t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~-~P~vLiihG~~D~~v~~~~s~~ 667 (1012)
.... ..+.|.... +.+...+|...+. +.+ .| +|++||..|..|++.++.+
T Consensus 626 ------~~~~--------------~~~~~~~~~--~~~~~~~~~~~~~------~~~~~P-~lii~G~~D~~v~~~~~~~ 676 (723)
T 1xfd_A 626 ------FSER--------------YLGLHGLDN--RAYEMTKVAHRVS------ALEEQQ-FLIIHPTADEKIHFQHTAE 676 (723)
T ss_dssp ------HHHH--------------HHCCCSSCC--SSTTTTCTHHHHT------SCCSCE-EEEEEETTCSSSCHHHHHH
T ss_pred ------ccHh--------------hcCCccCCh--hHHHhcChhhHHh------hcCCCC-EEEEEeCCCCCcCHhHHHH
Confidence 0000 001111000 0122233433333 456 46 9999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 668 FAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 668 ~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
++++|+.+ +.++.++++|+++|++.... ........+.+||.++++
T Consensus 677 ~~~~l~~~-------~~~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 677 LITQLIRG-------KANYSLQIYPDESHYFTSSS-LKQHLYRSIINFFVECFR 722 (723)
T ss_dssp HHHHHHHT-------TCCCEEEEETTCCSSCCCHH-HHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHC-------CCCeEEEEECCCCcccccCc-chHHHHHHHHHHHHHHhc
Confidence 99999988 88899999999999984322 223556677889988764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-26 Score=281.70 Aligned_cols=199 Identities=27% Similarity=0.442 Sum_probs=141.1
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc---------cchhhhhHHHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT---------KQFPLTIPVIY 714 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~---------~~~~~~~~~~~ 714 (1012)
.+.|.||++||+......+..... ...|. . .+.+++.++.+++.+++..+. ..++++...++
T Consensus 444 ~~~p~vl~~hGg~~~~~~~~~~~~-~~~l~-~-------~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~ 514 (695)
T 2bkl_A 444 GNAPTLLYGYGGFNVNMEANFRSS-ILPWL-D-------AGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAE 514 (695)
T ss_dssp SCCCEEEECCCCTTCCCCCCCCGG-GHHHH-H-------TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCccccCCCcCHH-HHHHH-h-------CCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHHHHHHHHH
Confidence 578889999997544332211111 11222 3 467788888887665654321 11355555566
Q ss_pred HHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCcccCCCCC
Q psy1288 715 FYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWESDYGSPA 787 (1012)
Q Consensus 715 fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~ 787 (1012)
+|.+. .+.+..+++ |+|+| ++.++..++++|++|.+ |++||..+.....+..|..+||+|.
T Consensus 515 ~l~~~-----~~~~~~~i~i~G~S~G-------G~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~ 582 (695)
T 2bkl_A 515 YLVQQ-----KYTQPKRLAIYGGSNG-------GLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAE 582 (695)
T ss_dssp HHHHT-----TSCCGGGEEEEEETHH-------HHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTT
T ss_pred HHHHc-----CCCCcccEEEEEECHH-------HHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCC
Confidence 66544 334455555 99998 55555555555665544 8899998877666777778899998
Q ss_pred ChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 788 NSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 788 ~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+++.++.+..+||+.+++ ..+.++|+||+||++|.|||+.++.+|+++|+.++. .|+|+++++++++||++
T Consensus 583 ~~~~~~~~~~~sp~~~~~-----~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~gH~~ 653 (695)
T 2bkl_A 583 KPEDFKTLHAYSPYHHVR-----PDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPG----NPATALLRIEANAGHGG 653 (695)
T ss_dssp SHHHHHHHHHHCGGGCCC-----SSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTT----CCSCEEEEEETTCBTTB
T ss_pred CHHHHHHHHhcChHhhhh-----hcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCcCC
Confidence 888899999999999999 223458999999999999999999999999998432 24499999999999999
Q ss_pred CCCch
Q psy1288 868 GKPTT 872 (1012)
Q Consensus 868 ~~~~~ 872 (1012)
.++..
T Consensus 654 ~~~~~ 658 (695)
T 2bkl_A 654 ADQVA 658 (695)
T ss_dssp CSCHH
T ss_pred CCCHH
Confidence 77544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=276.64 Aligned_cols=537 Identities=12% Similarity=0.055 Sum_probs=298.4
Q ss_pred CeeeCCEEEEEEEcCCC----CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 111 PQRQGDHYFFFHNTGLQ----NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~----~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
.+|||++++|..+.... ....+|+.+..+++.++|+. +...+..++|||||++|||+.+ .+||
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~-------~~~~~~~~~~SPdG~~la~~~~------~~i~ 135 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER-------IPNNTQWVTWSPVGHKLAYVWN------NDIY 135 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------CCTTEEEEEECSSTTCEEEEET------TEEE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc-------CCCcceeeEECCCCCEEEEEEC------CeEE
Confidence 36999999998874311 12678899988877666554 2224678999999999999854 2799
Q ss_pred EEECCCCceeceeeccee-------------------eeeeEEeeCCCeEEEEecCCCCCc------------c------
Q psy1288 187 FKDVATGKEYPEVLHRLK-------------------FVSIAWTHDHKGVFYSNQEPKSKS------------K------ 229 (1012)
Q Consensus 187 v~dl~tg~~~~~t~~~~~-------------------~~~~~WSpDG~~l~y~~~~~~~~g------------~------ 229 (1012)
++|+++|+.++++..+.. ...+.|||||+.|+|.+.+..... .
T Consensus 136 ~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (740)
T 4a5s_A 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (740)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred EEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCccee
Confidence 999999988776543321 124899999999999975432100 0
Q ss_pred ----cCCCCCc--eEEEEeecc---c------------------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCC
Q psy1288 230 ----KHSKKNR--SSAYHLTVN---V------------------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNF 282 (1012)
Q Consensus 230 ----~~~~~~~--~l~~~~~~~---~------------------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~ 282 (1012)
..+..+. .++.....+ . .-+....|||||+.+++.+++......|+.+|++++
T Consensus 216 ~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp EECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred ecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 0000111 121111111 0 002234699999988888888766778999998776
Q ss_pred c----ccCcEEeeccCCCcee------eeeEEecCCEEE-EEEEcCceEEEEEEecCCCceeeeecCCceEEEeeccccc
Q psy1288 283 A----ESNWKTLIEENKDDVL------DWATCVANDKLI-LSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKK 351 (1012)
Q Consensus 283 ~----~~~~~~l~~~~~~~~~------~~~~~~~~~~l~-~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spd 351 (1012)
+ ......++.+.....+ ......|++.++ +....+|..+|+++++++++ .+.|+.....+..+ +.+|
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~~~lT~g~~~v~~~-~~~d 373 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGI-EALT 373 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-CEESCCSSSCEEEE-EEEC
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-eEecccCCEEEEEE-EEEe
Confidence 4 1111223222222111 122345666776 66667888999999996554 45666554444332 2355
Q ss_pred CcEEEEEecC--C-CCCcEEEEEeCCCCCCCCCCcceE-EEEeccCCCCCCCCCceEEEEEECCCCceEEEEEEEeCCCC
Q psy1288 352 YSEIFYSFMS--F-LQPTIIFHCNIPARVDPNSKLETS-IFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQ 427 (1012)
Q Consensus 352 g~~l~~~~ss--~-~~p~~l~~~d~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~ 427 (1012)
++.|+|..+. . ..-..||++++. ++ ..+ .|+. .++......... ..|+||..+......+
T Consensus 374 ~~~i~f~~~~~~~~~~~~~ly~v~~~-----g~--~~~~~lt~----~~~~~~~~~~~~-~~S~dg~~~~~~~s~~---- 437 (740)
T 4a5s_A 374 SDYLYYISNEYKGMPGGRNLYKIQLI-----DY--TKVTCLSC----ELNPERCQYYSV-SFSKEAKYYQLRCSGP---- 437 (740)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETT-----EE--EEEEESST----TTSTTTBCBEEE-EECTTSSEEEEEECSB----
T ss_pred CCEEEEEEecCCCCCceeEEEEEECC-----CC--Ccceeecc----ccCCCCCceEEE-EECCCCCEEEEEeCCC----
Confidence 8899998865 1 223579999982 32 222 3331 111111111122 3477777543322111
Q ss_pred CCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC
Q psy1288 428 LDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507 (1012)
Q Consensus 428 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~ 507 (1012)
. .|.+ +++-. +.|-.+...+. + .++. ..+....
T Consensus 438 --~-~p~~-~l~~~------------------~~~~~~~~l~~--------------------n--~~~~---~~~~~~~ 470 (740)
T 4a5s_A 438 --G-LPLY-TLHSS------------------VNDKGLRVLED--------------------N--SALD---KMLQNVQ 470 (740)
T ss_dssp --S-SCEE-EEEET------------------TTTEEEEEEEC--------------------C--HHHH---HHHTTEE
T ss_pred --C-CCEE-EEEEC------------------CCCcEEEEecc--------------------C--hhhh---hhhhhcc
Confidence 1 1222 22110 00111111000 0 0000 0000000
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLP 587 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~p 587 (1012)
.|..-...+...+ . .
T Consensus 471 -------------------------~~~~~~~~~~~dg---~-------------------------------------~ 485 (740)
T 4a5s_A 471 -------------------------MPSKKLDFIILNE---T-------------------------------------K 485 (740)
T ss_dssp -------------------------CCEEEEEEEEETT---E-------------------------------------E
T ss_pred -------------------------CCccEEEEEccCC---e-------------------------------------E
Confidence 0100000001111 0 0
Q ss_pred cchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCC-CChHHHH
Q psy1288 588 LTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDR-VSPVHSL 666 (1012)
Q Consensus 588 lt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~-v~~~~s~ 666 (1012)
+ . . ..+ -|..... ..++|+|+++||+...+ +......
T Consensus 486 l-------------~------~--~~~---------------~P~~~~~------~~~~P~vv~~HGg~~~~~~~~~~~~ 523 (740)
T 4a5s_A 486 F-------------W------Y--QMI---------------LPPHFDK------SKKYPLLLDVYAGPCSQKADTVFRL 523 (740)
T ss_dssp E-------------E------E--EEE---------------ECTTCCT------TSCEEEEEECCCCTTCCCCCCCCCC
T ss_pred E-------------E------E--EEE---------------eCCCCCC------CCCccEEEEECCCCcccccccccCc
Confidence 0 0 0 000 0111111 36789999999985442 1111122
Q ss_pred HHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc---------chhhhhHHHHHHHHhCCCCCCCCCCCCCc--cC
Q psy1288 667 KFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK---------QFPLTIPVIYFYLTSGPVLQRYPETPNKA--DG 735 (1012)
Q Consensus 667 ~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~---------~~~~~~~~~~fl~~~l~~~~~~~d~~~~~--Gg 735 (1012)
.+...|.+. .+++++.+..++..+.+..+.. ..++..+.++|+.+ . ...|..+++ |.
T Consensus 524 ~~~~~l~~~-------~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~---~--~~~d~~ri~i~G~ 591 (740)
T 4a5s_A 524 NWATYLAST-------ENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK---M--GFVDNKRIAIWGW 591 (740)
T ss_dssp SHHHHHHHT-------TCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHT---S--TTEEEEEEEEEEE
T ss_pred CHHHHHHhc-------CCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHh---c--CCcCCccEEEEEE
Confidence 234455544 5677788877653333322111 13444445555542 2 333445555 99
Q ss_pred CccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCcc-cCCCCCChhhhhHhHcCCCCCCCCCCCC
Q psy1288 736 SENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWES-DYGSPANSSQFEYLLGYSPLHNIQGPNE 809 (1012)
Q Consensus 736 S~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~Sp~~~v~~~~~ 809 (1012)
|+| ++.++..+...|++|.+ |+.||..+.. .|.. ..|.|...+..+.+...||+.+++
T Consensus 592 S~G-------G~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 655 (740)
T 4a5s_A 592 SYG-------GYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS-----VYTERYMGLPTPEDNLDHYRNSTVMSRAE---- 655 (740)
T ss_dssp THH-------HHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH-----HHHHHHHCCSSTTTTHHHHHHSCSGGGGG----
T ss_pred CHH-------HHHHHHHHHhCCCceeEEEEcCCccchHHhhh-----HHHHHHcCCCCccccHHHHHhCCHHHHHh----
Confidence 999 77776666666666655 6677654421 1222 236653334456678899999999
Q ss_pred CCCCCCC-ceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 810 LKGKQYP-ATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 810 ~~~~~~~-p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+++. |+||+||++|.+||+.++.+|+++|+..|+ +++++++|++||++...
T Consensus 656 ---~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~-------~~~~~~~~~~~H~~~~~ 707 (740)
T 4a5s_A 656 ---NFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGV-------DFQAMWYTDEDHGIASS 707 (740)
T ss_dssp ---GGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHTTC-------CCEEEEETTCCTTCCSH
T ss_pred ---cCCCCcEEEEEcCCCCccCHHHHHHHHHHHHHCCC-------CeEEEEECCCCCcCCCC
Confidence 8886 999999999999999999999999999988 99999999999999543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=273.49 Aligned_cols=208 Identities=37% Similarity=0.563 Sum_probs=141.3
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc---------chhhhhHHHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK---------QFPLTIPVIY 714 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~---------~~~~~~~~~~ 714 (1012)
.+.|+||++||+......+..... ...|.+. .+.+++.++.+++.+++..+.. .++++.+.++
T Consensus 464 ~~~P~vl~~hGg~~~~~~~~~~~~-~~~l~~~-------~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~ 535 (710)
T 2xdw_A 464 GSHPAFLYGYGGFNISITPNYSVS-RLIFVRH-------MGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535 (710)
T ss_dssp SCSCEEEECCCCTTCCCCCCCCHH-HHHHHHH-------HCCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCcCCCcccHH-HHHHHHh-------CCcEEEEEccCCCCCCChHHHHhhhhhcCCchHHHHHHHHH
Confidence 568889999998543333222211 1234442 3567788888776555432211 1345555555
Q ss_pred HHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchh-----hhcccccCCCCCCCCCCCcccCCCCC
Q psy1288 715 FYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILI-----AEVLDMLKFNKFTIGYFWESDYGSPA 787 (1012)
Q Consensus 715 fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~ 787 (1012)
+|.+. .+.+..+++ |+|+| ++.++..++++|++|. +|++||.++...+.+..|..+||+++
T Consensus 536 ~l~~~-----~~~~~~~i~i~G~S~G-------G~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~ 603 (710)
T 2xdw_A 536 YLIKE-----GYTSPKRLTINGGSNG-------GLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSD 603 (710)
T ss_dssp HHHHT-----TSCCGGGEEEEEETHH-------HHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTT
T ss_pred HHHHc-----CCCCcceEEEEEECHH-------HHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhHHHhCCCCC
Confidence 65544 334455555 99998 5555555555555554 48899999887666667888899998
Q ss_pred ChhhhhHhHcCCCCCCCCCCCCCCCCCC-CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 788 NSSQFEYLLGYSPLHNIQGPNELKGKQY-PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 788 ~~~~~~~~~~~Sp~~~v~~~~~~~~~~~-~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
+++.++.+..+||+.+++... ..++. ||+||+||++|.|||+.++.+|+++|+......+++|+|+++++++++|||
T Consensus 604 ~~~~~~~~~~~sp~~~~~~~~--~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 681 (710)
T 2xdw_A 604 SKQHFEWLIKYSPLHNVKLPE--ADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHG 681 (710)
T ss_dssp SHHHHHHHHHHCGGGCCCCCS--STTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEEEEEESSCCSS
T ss_pred CHHHHHHHHHhCcHhhhcccc--cccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcCEEEEEeCCCCcC
Confidence 888888899999998886100 01344 699999999999999999999999999981111123449999999999999
Q ss_pred CCCCchh
Q psy1288 867 GGKPTTK 873 (1012)
Q Consensus 867 ~~~~~~~ 873 (1012)
+.++..+
T Consensus 682 ~~~~~~~ 688 (710)
T 2xdw_A 682 AGKPTAK 688 (710)
T ss_dssp TTCCHHH
T ss_pred CCCCHHH
Confidence 9887443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=280.79 Aligned_cols=198 Identities=33% Similarity=0.486 Sum_probs=132.3
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc---------chhhhhHHHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK---------QFPLTIPVIY 714 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~---------~~~~~~~~~~ 714 (1012)
.+.|+||++||+.-....+..... ...... .+.+++.++.+|+.+++..+.. .++++...++
T Consensus 486 ~~~p~vl~~hGg~~~~~~~~~~~~--~~~l~~-------~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~ 556 (741)
T 1yr2_A 486 GPLPTLLYGYGGFNVALTPWFSAG--FMTWID-------SGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGE 556 (741)
T ss_dssp SCCCEEEECCCCTTCCCCCCCCHH--HHHHHT-------TTCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCccCCCCcCHH--HHHHHH-------CCcEEEEEecCCCCCCCHHHHHhhhhhcCCCcHHHHHHHHH
Confidence 467889999998543332221111 112223 5678888888876665433211 1345555555
Q ss_pred HHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCcccCCCCC
Q psy1288 715 FYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWESDYGSPA 787 (1012)
Q Consensus 715 fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~ 787 (1012)
+|.+. .+.+..+++ |+|+| ++.++..++++|++|.+ |++||.++.....+..|..+||+|+
T Consensus 557 ~l~~~-----~~~~~~ri~i~G~S~G-------G~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~ 624 (741)
T 1yr2_A 557 WLIAN-----GVTPRHGLAIEGGSNG-------GLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPE 624 (741)
T ss_dssp HHHHT-----TSSCTTCEEEEEETHH-------HHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTT
T ss_pred HHHHc-----CCCChHHEEEEEECHH-------HHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCC
Confidence 65544 334455555 99998 55555555555665544 8899999877666667878899998
Q ss_pred ChhhhhHhHcCCCCCCCCCCCCCCCC-CC-CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q psy1288 788 NSSQFEYLLGYSPLHNIQGPNELKGK-QY-PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 865 (1012)
Q Consensus 788 ~~~~~~~~~~~Sp~~~v~~~~~~~~~-~~-~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH 865 (1012)
+++.++.+..+||+.+++ + +. +|+||+||++|.|||+.|+.+|+++|+... +.|+|+++++++++||
T Consensus 625 ~~~~~~~~~~~sp~~~~~-------~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~----~~g~~~~l~~~~~~gH 693 (741)
T 1yr2_A 625 KEADWRVLRRYSPYHNVR-------SGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAA----IGPKPHLIRIETRAGH 693 (741)
T ss_dssp SHHHHHHHHTTCGGGCCC-------TTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSC----CCSSCEEEEEC-----
T ss_pred CHHHHHHHHHcCchhhhh-------ccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhh----cCCCCEEEEEeCCCCc
Confidence 888899999999999999 5 66 799999999999999999999999999921 1234999999999999
Q ss_pred CCCCCchh
Q psy1288 866 GGGKPTTK 873 (1012)
Q Consensus 866 ~~~~~~~~ 873 (1012)
++..+..+
T Consensus 694 ~~~~~~~~ 701 (741)
T 1yr2_A 694 GSGKPIDK 701 (741)
T ss_dssp ----CHHH
T ss_pred CCCCCHHH
Confidence 99876443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=265.46 Aligned_cols=256 Identities=12% Similarity=0.016 Sum_probs=148.9
Q ss_pred CCCCCeeeCCEEEEEEEc-CCCCeeEEEEEeCCCCceEEEcCCCC--CCCCCceEeeeEEEC--CCCcE-EEEEEeCCCC
Q psy1288 107 KYSSPQRQGDHYFFFHNT-GLQNHSVMYIQDSLDGEARVFLDPNN--LSDDGTVSLGSYSFS--EDGKT-LAYCLSSSGS 180 (1012)
Q Consensus 107 ~~s~p~~dG~~~yy~~~~-~~~~~~~l~~~~~~~g~~~~L~D~n~--la~~g~~~i~~~~~S--PDGk~-iAy~~~~~G~ 180 (1012)
....|..+|+++||++.. ..++...||++ ..++..++|+.... .+.-..+.-..+.|| |||++ |||+.+..
T Consensus 25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~-- 101 (662)
T 3azo_A 25 RPACVGAVGDEVWWVAPRPAEAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD-- 101 (662)
T ss_dssp CCEEEEEETTEEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT--
T ss_pred ccceeEEcCCeEEEEecCcccCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC--
Confidence 455566779999999874 22456889988 44667777765321 100001111245555 99999 99987652
Q ss_pred ceEEEEEEECC--C-Cceeceee-----cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc------c
Q psy1288 181 DWTSMHFKDVA--T-GKEYPEVL-----HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN------V 246 (1012)
Q Consensus 181 ~~~~L~v~dl~--t-g~~~~~t~-----~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~------~ 246 (1012)
.+||+++++ + ++.++++. .......++|||||+.|+|++.+....+ .......++.....+ .
T Consensus 102 --~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 102 --QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG--PSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp --CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS--TTCEEEEEEEEETTSTTTTCGG
T ss_pred --CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC--CCCceeEEEEEECCCCccccCC
Confidence 479999998 5 77666554 2345678999999999999975421000 000011222111111 0
Q ss_pred ----------cceeeeeeecCCCEEEEEECCCC----CCceEEEEeCC-CCcccCcEEeeccCCCceeeeeEEecCCEEE
Q psy1288 247 ----------APITSQYITNEGPQFVFKTNKDA----PNYRLITIDFD-NFAESNWKTLIEENKDDVLDWATCVANDKLI 311 (1012)
Q Consensus 247 ----------~~i~~~~~s~dg~~l~~~tn~~~----~~~~L~~~dl~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 311 (1012)
..+..+.|||||++|++.+.... ....|+.+|++ ++.....+.+.......+.......+++ ++
T Consensus 178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~ 256 (662)
T 3azo_A 178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LI 256 (662)
T ss_dssp GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EE
T ss_pred ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EE
Confidence 11224569999999999885432 23689999997 4511123455543223333222234545 77
Q ss_pred EEEEcCceEEEEEEecCCCceeeeecCCceE--------EEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 312 LSYIHHVKNVMHLHDLASGKHLYTFPLDVGT--------IVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 312 ~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~--------v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+....++..+|+++++++|+....+...... +..+.+++++. ++++.+. .-..||.+|+
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~d~ 323 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK--GAAVLGILDP 323 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS--SSCEEEEEET
T ss_pred EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc--CccEEEEEEC
Confidence 7777777779999998666643332221110 12334455655 5555554 4567999998
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=260.68 Aligned_cols=196 Identities=37% Similarity=0.543 Sum_probs=137.7
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc---------chhhhhHHH
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK---------QFPLTIPVI 713 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~---------~~~~~~~~~ 713 (1012)
..+.|.||++||+.-....+..... ...|. . .+.+++.++.+++.+++..+.. .++++.+.+
T Consensus 451 ~~~~P~ll~~hGg~~~~~~~~~~~~-~~~l~-~-------~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~ 521 (693)
T 3iuj_A 451 DGSNPTILYGYGGFDVSLTPSFSVS-VANWL-D-------LGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAA 521 (693)
T ss_dssp SSCCCEEEECCCCTTCCCCCCCCHH-HHHHH-H-------TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCcCCCCccCHH-HHHHH-H-------CCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHH
Confidence 3578999999997433333222211 12232 3 5678888888887666543322 135666666
Q ss_pred HHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCcccCCCC
Q psy1288 714 YFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWESDYGSP 786 (1012)
Q Consensus 714 ~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~ 786 (1012)
+||.+. ++.++.+++ |+|+| ++.+++.++++|++|.+ |++||.++...+.+..|..+||+|
T Consensus 522 ~~l~~~-----~~~d~~ri~i~G~S~G-------G~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p 589 (693)
T 3iuj_A 522 EYLKAE-----GYTRTDRLAIRGGSNG-------GLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTS 589 (693)
T ss_dssp HHHHHT-----TSCCGGGEEEEEETHH-------HHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCT
T ss_pred HHHHHc-----CCCCcceEEEEEECHH-------HHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHcCCc
Confidence 676655 344555665 99998 55555555556666544 899999988777777788899999
Q ss_pred CChhh-hhHhHcCCCCCCCCCCCCCCCC-CCCc-eEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q psy1288 787 ANSSQ-FEYLLGYSPLHNIQGPNELKGK-QYPA-TLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA 863 (1012)
Q Consensus 787 ~~~~~-~~~~~~~Sp~~~v~~~~~~~~~-~~~p-~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 863 (1012)
+++++ ++.+..+||+.+++ + +..| +||+||++|+|||+.|+.+|+++|+..+. .|+|+++++++++
T Consensus 590 ~~~~~~~~~~~~~sp~~~~~-------~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ 658 (693)
T 3iuj_A 590 ADSEAMFDYLKGYSPLHNVR-------PGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNA----GPHPQLIRIETNA 658 (693)
T ss_dssp TSCHHHHHHHHHHCHHHHCC-------TTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCC----SSSCEEEEEEC--
T ss_pred cCHHHHHHHHHhcCHHHhhc-------ccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCC----CCCCEEEEEeCCC
Confidence 88877 88899999999999 6 6665 99999999999999999999999999853 2449999999999
Q ss_pred CCCCCCC
Q psy1288 864 GHGGGKP 870 (1012)
Q Consensus 864 gH~~~~~ 870 (1012)
|||+.++
T Consensus 659 gH~~~~~ 665 (693)
T 3iuj_A 659 GHGAGTP 665 (693)
T ss_dssp -----CH
T ss_pred CCCCccc
Confidence 9999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=256.40 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=119.8
Q ss_pred CCCCCcEEEEeeCCCCCC-ChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc---------cchhhhhHH
Q psy1288 643 GKQYPATLLMTADHDDRV-SPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT---------KQFPLTIPV 712 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v-~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~---------~~~~~~~~~ 712 (1012)
+.++|.|+++||+..... .......+...|.+. .++.++.++.++.-+.+..+. ...+++...
T Consensus 493 ~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~-------~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~ 565 (719)
T 1z68_A 493 SKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASK-------EGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITA 565 (719)
T ss_dssp SSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHT-------TCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCcCcccccchhhHHHHHHhc-------CCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHH
Confidence 357888999999865431 111111233445434 567777777654333332211 123444445
Q ss_pred HHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCc-ccCC
Q psy1288 713 IYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWE-SDYG 784 (1012)
Q Consensus 713 ~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~g 784 (1012)
++++.+. ...+..+++ |.|+| ++.++..+...|++|.+ |+.||..+.. .+. ..+|
T Consensus 566 ~~~l~~~-----~~~d~~~i~l~G~S~G-------G~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~g 628 (719)
T 1z68_A 566 VRKFIEM-----GFIDEKRIAIWGWSYG-------GYVSSLALASGTGLFKCGIAVAPVSSWEYYAS-----VYTERFMG 628 (719)
T ss_dssp HHHHHTT-----SCEEEEEEEEEEETHH-------HHHHHHHHTTSSSCCSEEEEESCCCCTTTSBH-----HHHHHHHC
T ss_pred HHHHHhc-----CCCCCceEEEEEECHH-------HHHHHHHHHhCCCceEEEEEcCCccChHHhcc-----ccchhhcC
Confidence 5555442 223334444 88998 66665555555665544 6666544311 111 1246
Q ss_pred CCCChhhhhHhHcCCCCCCCCCCCCCCCCCCC-ceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q psy1288 785 SPANSSQFEYLLGYSPLHNIQGPNELKGKQYP-ATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA 863 (1012)
Q Consensus 785 ~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~-p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 863 (1012)
.|...+..+.+...+|+.+++ ++++ |+||+||++|.+||+.++.+|+++|+..++ +++++++|++
T Consensus 629 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~-------~~~~~~~~~~ 694 (719)
T 1z68_A 629 LPTKDDNLEHYKNSTVMARAE-------YFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQV-------DFQAMWYSDQ 694 (719)
T ss_dssp CSSTTTTHHHHHHTCSGGGGG-------GGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTC-------CCEEEEETTC
T ss_pred CcccccchhhhhhCCHhHHHh-------cCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCC-------ceEEEEECcC
Confidence 663333455677889999999 8887 899999999999999999999999999988 9999999999
Q ss_pred CCCC
Q psy1288 864 GHGG 867 (1012)
Q Consensus 864 gH~~ 867 (1012)
||++
T Consensus 695 gH~~ 698 (719)
T 1z68_A 695 NHGL 698 (719)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9999
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=252.61 Aligned_cols=250 Identities=10% Similarity=0.034 Sum_probs=151.9
Q ss_pred CeeeCCEEEEEEEcCCCC----eeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 111 PQRQGDHYFFFHNTGLQN----HSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~----~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
.+|||++++|........ ...||+.+..+++.++|.... +....+..++|||||++|||+.. .+||
T Consensus 68 ~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----~~~~~~~~~~~SPdG~~la~~~~------~~i~ 137 (723)
T 1xfd_A 68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE----VSNAKLQYAGWGPKGQQLIFIFE------NNIY 137 (723)
T ss_dssp ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT----CCSCCCSBCCBCSSTTCEEEEET------TEEE
T ss_pred ECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc----cccccccccEECCCCCEEEEEEC------CeEE
Confidence 459999999987643221 267888888777766665421 11223678999999999999886 1799
Q ss_pred EEECCCCceeceeecce-------------------eeeeeEEeeCCCeEEEEecCCCCCcc------------------
Q psy1288 187 FKDVATGKEYPEVLHRL-------------------KFVSIAWTHDHKGVFYSNQEPKSKSK------------------ 229 (1012)
Q Consensus 187 v~dl~tg~~~~~t~~~~-------------------~~~~~~WSpDG~~l~y~~~~~~~~g~------------------ 229 (1012)
++|+++|+.++++.... ....++|||||+.|+|.+.+......
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceecc
Confidence 99999998776554321 11469999999999999754211000
Q ss_pred --cCC--CCCceEEEEeeccc----------------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEE
Q psy1288 230 --KHS--KKNRSSAYHLTVNV----------------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKT 289 (1012)
Q Consensus 230 --~~~--~~~~~l~~~~~~~~----------------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~ 289 (1012)
.++ +....++.....+. ..+....|||||+.|++.+++......|+.+|+++++ ...
T Consensus 218 ~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~ 294 (723)
T 1xfd_A 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTK 294 (723)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceE
Confidence 000 00112222111000 1122356999999887777776566789999998765 333
Q ss_pred eeccC-CCcee----eeeEEecCCEEEEE-EEcCc----eEEEEEEe-cCCCce--eeeecCCceEEE-eecccccCcEE
Q psy1288 290 LIEEN-KDDVL----DWATCVANDKLILS-YIHHV----KNVMHLHD-LASGKH--LYTFPLDVGTIV-GFSGKKKYSEI 355 (1012)
Q Consensus 290 l~~~~-~~~~~----~~~~~~~~~~l~~~-~~~~g----~~~l~~~d-l~~G~~--~~~l~~~~~~v~-~~~~spdg~~l 355 (1012)
++... ...+. ......+++.|++. ...++ ..+|++++ ..+++. ...++.....+. .+.|+|||+.|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEE
Confidence 43221 11111 11223465667765 55566 67899999 444441 345553323333 36899999999
Q ss_pred EEEecCCC-CCcEEEEEeC
Q psy1288 356 FYSFMSFL-QPTIIFHCNI 373 (1012)
Q Consensus 356 ~~~~ss~~-~p~~l~~~d~ 373 (1012)
+|..+... .-..||.+++
T Consensus 375 ~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEESSSCTTCCEEEEECS
T ss_pred EEEEcCCCCcceEEEEEeC
Confidence 98775531 2346777776
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-22 Score=246.96 Aligned_cols=250 Identities=11% Similarity=0.029 Sum_probs=154.4
Q ss_pred CCeeeCCEEEEEEE-cCCCCeeEEEEEeCCCCceEEEcCCCCCCCC------------------CceEeeeEEECCCCcE
Q psy1288 110 SPQRQGDHYFFFHN-TGLQNHSVMYIQDSLDGEARVFLDPNNLSDD------------------GTVSLGSYSFSEDGKT 170 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~-~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~------------------g~~~i~~~~~SPDGk~ 170 (1012)
.++|||++++|... +++.....||+.+..+++.+++++.....++ +...+..++|||||++
T Consensus 43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~ 122 (741)
T 2ecf_A 43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR 122 (741)
T ss_dssp EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence 45699999999987 5444467899999988888888864432200 0034678999999999
Q ss_pred EEEEEeCCCCceEEEEEEECCCC---ceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecccc
Q psy1288 171 LAYCLSSSGSDWTSMHFKDVATG---KEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVA 247 (1012)
Q Consensus 171 iAy~~~~~G~~~~~L~v~dl~tg---~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 247 (1012)
|+|... .+||++|++++ +.++++........++|||||+.|+|.+.+.-..-..+.+...++. .....
T Consensus 123 l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~---~~~~~ 193 (741)
T 2ecf_A 123 LLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT---ADGST 193 (741)
T ss_dssp EEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC---CCCCS
T ss_pred EEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec---cCCcc
Confidence 999886 38999999999 7666555444467899999999999987431000000000000000 00000
Q ss_pred ----------------ceeeeeeecCCCEEEEEECCCC-----------------------------CCceEEEEeCCC-
Q psy1288 248 ----------------PITSQYITNEGPQFVFKTNKDA-----------------------------PNYRLITIDFDN- 281 (1012)
Q Consensus 248 ----------------~i~~~~~s~dg~~l~~~tn~~~-----------------------------~~~~L~~~dl~~- 281 (1012)
.+....|||||++|++.+..+. ....|+.+|+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0133469999999999865321 123788888876
Q ss_pred CcccCcEEeecc-CCCceeeeeEEecCCEEEEEEEc--CceEEEEEEecCCCceeeeecCCc-e---EEEeecccccCcE
Q psy1288 282 FAESNWKTLIEE-NKDDVLDWATCVANDKLILSYIH--HVKNVMHLHDLASGKHLYTFPLDV-G---TIVGFSGKKKYSE 354 (1012)
Q Consensus 282 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~--~g~~~l~~~dl~~G~~~~~l~~~~-~---~v~~~~~spdg~~ 354 (1012)
++ ...+... .....+..+.+.+++.|++.... .....|+++++.+|+....+.... . .+..+.|+|||+
T Consensus 274 ~~---~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~- 349 (741)
T 2ecf_A 274 AQ---TQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS- 349 (741)
T ss_dssp CC---CEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-
T ss_pred Cc---eEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-
Confidence 55 2333322 11222222222676788776653 235789999998776544433221 1 223578899998
Q ss_pred EEEEecCCCCCcEEEEEeC
Q psy1288 355 IFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 355 l~~~~ss~~~p~~l~~~d~ 373 (1012)
++++.+. ..-..||.+|+
T Consensus 350 ~~~~~~~-~g~~~l~~~~~ 367 (741)
T 2ecf_A 350 ILWSSER-TGFQHLYRIDS 367 (741)
T ss_dssp EEEEECT-TSSCEEEEECS
T ss_pred EEEEecC-CCccEEEEEcC
Confidence 5555433 23367999987
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=239.78 Aligned_cols=240 Identities=12% Similarity=0.101 Sum_probs=149.0
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|| ++++|..+ ..||+.+..+++.+.++... ..+..++|||||++|||+.+ .+|+++|+
T Consensus 89 ~spd-~~~~~~~~------~~i~~~d~~~~~~~~l~~~~-------~~~~~~~~SpdG~~la~~~~------~~i~v~~~ 148 (706)
T 2z3z_A 89 DAGR-GLVVLFTQ------GGLVGFDMLARKVTYLFDTN-------EETASLDFSPVGDRVAYVRN------HNLYIARG 148 (706)
T ss_dssp ETTT-TEEEEEET------TEEEEEETTTTEEEEEECCT-------TCCTTCEECTTSSEEEEEET------TEEEEEEC
T ss_pred ECCC-CeEEEEEC------CEEEEEECCCCceEEccCCc-------ccccCCcCCCCCCEEEEEEC------CeEEEEec
Confidence 3588 88888742 46888888777777776522 23677999999999999642 27999999
Q ss_pred CC-----Cceeceeeccee---------------eeeeEEeeCCCeEEEEecCCCCCcc-------------------c-
Q psy1288 191 AT-----GKEYPEVLHRLK---------------FVSIAWTHDHKGVFYSNQEPKSKSK-------------------K- 230 (1012)
Q Consensus 191 ~t-----g~~~~~t~~~~~---------------~~~~~WSpDG~~l~y~~~~~~~~g~-------------------~- 230 (1012)
++ |+.++++..... ...++|||||+.|+|.+.+...... .
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~ 228 (706)
T 2z3z_A 149 GKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMA 228 (706)
T ss_dssp BCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBT
T ss_pred CcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCC
Confidence 98 887654433222 2679999999999998732110000 0
Q ss_pred -CCCCCceEEEEeeccc------------cceeeeeeecCCCEEEEEE-CCCCCCceEEEEeCCCCcccCcEEeeccCCC
Q psy1288 231 -HSKKNRSSAYHLTVNV------------APITSQYITNEGPQFVFKT-NKDAPNYRLITIDFDNFAESNWKTLIEENKD 296 (1012)
Q Consensus 231 -~~~~~~~l~~~~~~~~------------~~i~~~~~s~dg~~l~~~t-n~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~ 296 (1012)
..+....++....... ..+....|+|||+.|++.+ ++......|+.+|+.+++ ..+.+..+...
T Consensus 229 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~ 306 (706)
T 2z3z_A 229 GTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDK 306 (706)
T ss_dssp TSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECS
T ss_pred CCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCC
Confidence 0001112222111000 1233456999999999875 444556789999998762 13444432221
Q ss_pred ce---eeeeEEec--CCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEe-ecccccCcEEEEEecCCC-CCcEEE
Q psy1288 297 DV---LDWATCVA--NDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVG-FSGKKKYSEIFYSFMSFL-QPTIIF 369 (1012)
Q Consensus 297 ~~---~~~~~~~~--~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~-~~~spdg~~l~~~~ss~~-~p~~l~ 369 (1012)
.. .....+.. ++.+++....++..+|+.++. +++....++.....+.. +.|+||++.|++..+... .-..||
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~ 385 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFY 385 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEE
T ss_pred CeECccCCceeecCCCCEEEEEEccCCccEEEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEE
Confidence 11 12233332 355666666777789999997 45555566554444444 689999999988875522 124799
Q ss_pred EEeC
Q psy1288 370 HCNI 373 (1012)
Q Consensus 370 ~~d~ 373 (1012)
.+|+
T Consensus 386 ~~d~ 389 (706)
T 2z3z_A 386 CIDI 389 (706)
T ss_dssp EEET
T ss_pred EEEc
Confidence 9998
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=250.83 Aligned_cols=197 Identities=18% Similarity=0.231 Sum_probs=138.2
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc----------chhhhhHH
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK----------QFPLTIPV 712 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~----------~~~~~~~~ 712 (1012)
..++|+||++||+......+.... ..+.... .+.+++.++.+|+-+++..+.. .++++.+.
T Consensus 506 ~~~~P~vl~~HGg~~~~~~~~~~~--~~~~l~~-------~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~ 576 (751)
T 2xe4_A 506 SQPQPCMLYGYGSYGLSMDPQFSI--QHLPYCD-------RGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAA 576 (751)
T ss_dssp TSCCCEEEECCCCTTCCCCCCCCG--GGHHHHT-------TTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCcCCCCcchH--HHHHHHh-------CCcEEEEEeeCCCCCcCcchhhccccccccCccHHHHHHH
Confidence 357899999999854333211111 1122233 5788888988877666543322 23455555
Q ss_pred HHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCC---Cccc
Q psy1288 713 IYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYF---WESD 782 (1012)
Q Consensus 713 ~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~ 782 (1012)
++||.+. .+.+..+++ |+|+| ++.+++.++++|++|.+ |++||.++........ +..+
T Consensus 577 ~~~l~~~-----~~~d~~ri~i~G~S~G-------G~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 644 (751)
T 2xe4_A 577 AEFLVNA-----KLTTPSQLACEGRSAG-------GLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEE 644 (751)
T ss_dssp HHHHHHT-----TSCCGGGEEEEEETHH-------HHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHHHHTTT
T ss_pred HHHHHHC-----CCCCcccEEEEEECHH-------HHHHHHHHHhCchheeEEEEeCCcchHHhhhcccCcccchhhHHH
Confidence 6666554 334555665 99999 66666666666666644 7888877542222111 1256
Q ss_pred CCCCCChhhhhHhHcCCCCCCCCCCCCCCCCCCCc-eEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q psy1288 783 YGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPA-TLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIET 861 (1012)
Q Consensus 783 ~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p-~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 861 (1012)
+|+|++++.++.+..+||+.+++ ++..| +||+||++|+|||+.|+.+|+++|+..|+ .++++.+.+++
T Consensus 645 ~g~p~~~~~~~~~~~~sp~~~~~-------~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~~~----~~~~~~~~~~~ 713 (751)
T 2xe4_A 645 WGNPNEYKYYDYMLSYSPMDNVR-------AQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKT----DNNEILLNIDM 713 (751)
T ss_dssp TCCTTSHHHHHHHHHHCTGGGCC-------SSCCCEEEEEEETTCSSSCTHHHHHHHHHHHHHCC----SCCCEEEEEET
T ss_pred cCCCCCHHHHHHHHhcChhhhhc-------cCCCCceeEEeeCCCCCCCHHHHHHHHHHHHhcCC----CCceEEEEECC
Confidence 89888777788899999999999 78886 99999999999999999999999999976 24588999999
Q ss_pred CCCCCCCCCc
Q psy1288 862 KAGHGGGKPT 871 (1012)
Q Consensus 862 ~~gH~~~~~~ 871 (1012)
++||++..+.
T Consensus 714 ~~gH~~~~~~ 723 (751)
T 2xe4_A 714 ESGHFSAKDR 723 (751)
T ss_dssp TCCSSCCSSH
T ss_pred CCCCCCcCCh
Confidence 9999998654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-23 Score=247.21 Aligned_cols=192 Identities=13% Similarity=0.051 Sum_probs=121.5
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
.+..+++||||++|||+...+| ..+||.+ ++|+.++++... .....++|||| .++|++.... +....
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g--~~~lw~~--~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~------g~~~~ 90 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEG--SVNAYLY--DGGETVKLNREPINSVLDPHYGVG--RVILVRDVSK------GAEQH 90 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETT--EEEEEEE--ETTEEEECCSSCCSEECEECTTCS--EEEEEEECST------TSCCE
T ss_pred chheeecCCCCCeEEEEEccCC--ceeEEEE--cCCCcEeeecccccccccccCCCC--eEEEEeccCC------CCcce
Confidence 4668899999999999988665 3466665 688887766554 34678999999 5777765310 01111
Q ss_pred eEEEEee--cc-------ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecC
Q psy1288 237 SSAYHLT--VN-------VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVAN 307 (1012)
Q Consensus 237 ~l~~~~~--~~-------~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (1012)
.++.... .+ ..+.....|+|||+.+++.+..... ..| .|+++++ .+.+.... . ......+||
T Consensus 91 ~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~-~~l--~d~~~g~---~~~l~~~~-~--~~~~~spDG 161 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDR-VAL--YALDGGG---LRELARLP-G--FGFVSDIRG 161 (582)
T ss_dssp EEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSC-EEE--EEEETTE---EEEEEEES-S--CEEEEEEET
T ss_pred EEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCC-ceE--EEccCCc---EEEeecCC-C--ceEEECCCC
Confidence 2222211 00 0223344699999988887754322 224 4666654 34454333 2 233345677
Q ss_pred CEEEEEEEc-CceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 308 DKLILSYIH-HVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 308 ~~l~~~~~~-~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.|++...+ ++...|+++++++|+. +.++...+.+..+.|||||+.|+ .. +......|+++|+
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~-~~-~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTA-GL-ETAREARLVTVDP 225 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEE-EE-ECSSCEEEEEECT
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEE-Ec-cCCCeeEEEEEcC
Confidence 888766554 3446799999977765 45655556677899999999988 32 2223358999999
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=191.11 Aligned_cols=242 Identities=13% Similarity=0.069 Sum_probs=171.1
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
....+++.+++ ||.+|+++++.|++. ++.|+||++||+.+... ..+.. ...+.++||.|+.+|+||.|+.
T Consensus 124 ~~~~~~v~~~~-dg~~i~~~l~~p~~~---~~~P~vl~~hG~~~~~~-~~~~~--~~~l~~~G~~v~~~d~rG~G~s--- 193 (386)
T 2jbw_A 124 SPPAERHELVV-DGIPMPVYVRIPEGP---GPHPAVIMLGGLESTKE-ESFQM--ENLVLDRGMATATFDGPGQGEM--- 193 (386)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEECCSSS---CCEEEEEEECCSSCCTT-TTHHH--HHHHHHTTCEEEEECCTTSGGG---
T ss_pred CCCeEEEEEEe-CCEEEEEEEEcCCCC---CCCCEEEEeCCCCccHH-HHHHH--HHHHHhCCCEEEEECCCCCCCC---
Confidence 35688899888 899999999999873 67899999888654332 22222 4555567999999999997654
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeee
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~ 559 (1012)
...........+++.++++++.+++.+++++|+++|+|+||++++.++.+ |++++++|+. | +.++....
T Consensus 194 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~---~~~~~~~~--- 262 (386)
T 2jbw_A 194 ---FEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-G---GFSDLDYW--- 262 (386)
T ss_dssp ---TTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-S---CCSCSTTG---
T ss_pred ---CCCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-c---cCChHHHH---
Confidence 11122233444578889999999888899999999999999999999998 8899999998 8 33211000
Q ss_pred cccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHH-HHHHcCCcccCCCCC
Q psy1288 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQF-EYLLGYSPLHNIQGP 638 (1012)
Q Consensus 560 ~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~-~~~~~~sP~~~~~~p 638 (1012)
..++. . +.+ .+...+|.+...+.. +.+..++|...+.
T Consensus 263 ---------------~~~~~-----------~---~~~-----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 300 (386)
T 2jbw_A 263 ---------------DLETP-----------L---TKE-----------SWKYVSKVDTLEEARLHVHAALETRDVLS-- 300 (386)
T ss_dssp ---------------GGSCH-----------H---HHH-----------HHHHHTTCSSHHHHHHHHHHHTCCTTTGG--
T ss_pred ---------------HhccH-----------H---HHH-----------HHHHHhCCCCHHHHHHHHHHhCChhhhhc--
Confidence 00000 0 000 011224443333444 6678888887766
Q ss_pred CcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHH-HhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 639 DELKGKQYPATLLMTADHDDRVSPVHSLKFAATL-QEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 639 ~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L-~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
++++| +|++||.+|. |++.++.+++++| .. ++.+.+++++||++.. ........+.+||.
T Consensus 301 ----~i~~P-~Lii~G~~D~-v~~~~~~~l~~~l~~~----------~~~~~~~~~~gH~~~~---~~~~~~~~i~~fl~ 361 (386)
T 2jbw_A 301 ----QIACP-TYILHGVHDE-VPLSFVDTVLELVPAE----------HLNLVVEKDGDHCCHN---LGIRPRLEMADWLY 361 (386)
T ss_dssp ----GCCSC-EEEEEETTSS-SCTHHHHHHHHHSCGG----------GEEEEEETTCCGGGGG---GTTHHHHHHHHHHH
T ss_pred ----ccCCC-EEEEECCCCC-CCHHHHHHHHHHhcCC----------CcEEEEeCCCCcCCcc---chHHHHHHHHHHHH
Confidence 67888 9999999999 9999998888776 42 4689999999997632 23355677889999
Q ss_pred HhCCCC
Q psy1288 718 TSGPVL 723 (1012)
Q Consensus 718 ~~l~~~ 723 (1012)
++++..
T Consensus 362 ~~l~~~ 367 (386)
T 2jbw_A 362 DVLVAG 367 (386)
T ss_dssp HHHTSS
T ss_pred HhcCCc
Confidence 998753
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-19 Score=216.09 Aligned_cols=201 Identities=21% Similarity=0.303 Sum_probs=150.7
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc---------chhhhhHHH
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK---------QFPLTIPVI 713 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~---------~~~~~~~~~ 713 (1012)
..++|.||++||+......+.....+. +.... .+.+++.++.+++-+++..+.. .++++...+
T Consensus 475 ~~~~P~vl~~HGG~~~~~~~~~~~~~~-q~la~-------~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav 546 (711)
T 4hvt_A 475 DGKNPTLLEAYGGFQVINAPYFSRIKN-EVWVK-------NAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVS 546 (711)
T ss_dssp SSCCCEEEECCCCTTCCCCCCCCHHHH-HHTGG-------GTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCCCCCcccHHHH-HHHHH-------CCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHH
Confidence 467899999999854433333222222 22233 5678888999987776643221 134555666
Q ss_pred HHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCCCCCCcccCCCC
Q psy1288 714 YFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTIGYFWESDYGSP 786 (1012)
Q Consensus 714 ~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~ 786 (1012)
+||.+. ++.++.+++ |+|+| +|.++++++++|++|.| |++||.++.....+..|..+||+|
T Consensus 547 ~~L~~~-----~~~d~~rI~i~G~S~G-------G~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p 614 (711)
T 4hvt_A 547 EELIKQ-----NITSPEYLGIKGGSNG-------GLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDP 614 (711)
T ss_dssp HHHHHT-----TSCCGGGEEEEEETHH-------HHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCT
T ss_pred HHHHHc-----CCCCcccEEEEeECHH-------HHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHHHHhCCC
Confidence 666654 445566666 99999 66666666666776654 899999998877777888899999
Q ss_pred CChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHH-HHHhcCCCCCCCCEEEEEeCCCCC
Q psy1288 787 ANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATL-QEKLRDYPHQTNPLLIRIETKAGH 865 (1012)
Q Consensus 787 ~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~gH 865 (1012)
.++++++.+..+||+++++ ..+.+||+||+||++|+|||+.|+.+|+++| |++|+ |++++++|++||
T Consensus 615 ~~~~~~~~l~~~SP~~~v~-----~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~-------pv~l~~~p~~gH 682 (711)
T 4hvt_A 615 EIPNDLLHIKKYAPLENLS-----LTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNT-------KTYFLESKDSGH 682 (711)
T ss_dssp TSHHHHHHHHHHCGGGSCC-----TTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTC-------CEEEEEESSCCS
T ss_pred cCHHHHHHHHHcCHHHHHh-----hcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCC-------CEEEEEECCCCC
Confidence 8888899999999999999 2234469999999999999999999999999 99988 999999999999
Q ss_pred CCCCCchhhh
Q psy1288 866 GGGKPTTKQL 875 (1012)
Q Consensus 866 ~~~~~~~~~~ 875 (1012)
|+.++.++..
T Consensus 683 g~~~~~~~~~ 692 (711)
T 4hvt_A 683 GSGSDLKESA 692 (711)
T ss_dssp SSCSSHHHHH
T ss_pred cCcCCcchHH
Confidence 9987655443
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=174.35 Aligned_cols=216 Identities=13% Similarity=0.094 Sum_probs=135.2
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
..|+.+..+.||.+|+++++.|.+ .++.|+||++||+.+....+.+.. ..++|+++||+|+.+|+||+|+.+....
T Consensus 29 ~~e~~~~~~~dG~~i~g~l~~P~~---~~~~p~Vl~~HG~g~~~~~~~~~~-~a~~la~~Gy~Vl~~D~rG~G~s~~~~~ 104 (259)
T 4ao6_A 29 VQERGFSLEVDGRTVPGVYWSPAE---GSSDRLVLLGHGGTTHKKVEYIEQ-VAKLLVGRGISAMAIDGPGHGERASVQA 104 (259)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESS---SCCSEEEEEEC--------CHHHH-HHHHHHHTTEEEEEECCCC---------
T ss_pred ceEEEEEEeeCCeEEEEEEEeCCC---CCCCCEEEEeCCCcccccchHHHH-HHHHHHHCCCeEEeeccCCCCCCCCccc
Confidence 345555566899999999999987 456799999999876544444433 3567778899999999999886544322
Q ss_pred hhhhcC---------------CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCC
Q psy1288 482 DGGRLL---------------NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGN 546 (1012)
Q Consensus 482 ~~~~~~---------------~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 546 (1012)
...... .....+.|..++++++... .++++|+++|+|+||.+++.++...|++ ++++...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pri-~Aav~~~~- 180 (259)
T 4ao6_A 105 GREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKRI-KVALLGLM- 180 (259)
T ss_dssp ----CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTTE-EEEEEESC-
T ss_pred ccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCce-EEEEEecc-
Confidence 111000 0011234666777777553 5789999999999999999999988764 55554433
Q ss_pred CccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHH
Q psy1288 547 PEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYL 626 (1012)
Q Consensus 547 ~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~ 626 (1012)
..+ .....
T Consensus 181 ------------------------~~~-------------------------------------------~~~~~----- 188 (259)
T 4ao6_A 181 ------------------------GVE-------------------------------------------GVNGE----- 188 (259)
T ss_dssp ------------------------CTT-------------------------------------------STTHH-----
T ss_pred ------------------------ccc-------------------------------------------ccccc-----
Confidence 000 00000
Q ss_pred HcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccch
Q psy1288 627 LGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQF 706 (1012)
Q Consensus 627 ~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~ 706 (1012)
++...+. ++++| +|++||..|.+||+.++.+++.++.. ....++++|+ +|.... ..
T Consensus 189 ---~~~~~a~------~i~~P-~Li~hG~~D~~vp~~~~~~l~~al~~---------~~k~l~~~~G-~H~~~p----~~ 244 (259)
T 4ao6_A 189 ---DLVRLAP------QVTCP-VRYLLQWDDELVSLQSGLELFGKLGT---------KQKTLHVNPG-KHSAVP----TW 244 (259)
T ss_dssp ---HHHHHGG------GCCSC-EEEEEETTCSSSCHHHHHHHHHHCCC---------SSEEEEEESS-CTTCCC----HH
T ss_pred ---chhhhhc------cCCCC-EEEEecCCCCCCCHHHHHHHHHHhCC---------CCeEEEEeCC-CCCCcC----HH
Confidence 0111122 46778 99999999999999999998887643 3567888886 454221 12
Q ss_pred hhhhHHHHHHHHhCC
Q psy1288 707 PLTIPVIYFYLTSGP 721 (1012)
Q Consensus 707 ~~~~~~~~fl~~~l~ 721 (1012)
+.....++||+++|+
T Consensus 245 e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 245 EMFAGTVDYLDQRLK 259 (259)
T ss_dssp HHTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 445677899999975
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=171.38 Aligned_cols=224 Identities=18% Similarity=0.190 Sum_probs=155.9
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
+..+.+.+.+ +|..+.++++.|.+. .++.|+||++||..+.. ..+ ......|+++||.|+++|+||.++....+
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~p~~~--~~~~p~vv~~HG~~g~~--~~~-~~~~~~l~~~G~~v~~~d~~g~g~~~~~~ 77 (241)
T 3f67_A 4 IIAGETSIPS-QGENMPAYHARPKNA--DGPLPIVIVVQEIFGVH--EHI-RDLCRRLAQEGYLAIAPELYFRQGDPNEY 77 (241)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEETTC--CSCEEEEEEECCTTCSC--HHH-HHHHHHHHHTTCEEEEECTTTTTCCGGGC
T ss_pred ceeeeEEEec-CCcceEEEEecCCCC--CCCCCEEEEEcCcCccC--HHH-HHHHHHHHHCCcEEEEecccccCCCCCch
Confidence 4567777887 899999999999863 35689999999965432 122 23445666789999999999876543322
Q ss_pred Hhhh-------hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCc
Q psy1288 481 HDGG-------RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCG 553 (1012)
Q Consensus 481 ~~~~-------~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~ 553 (1012)
.... .........+|+.++++++.++. .++++++++|+|+||.+++.++.+.|+ +.+++...+. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~-~~~~-- 152 (241)
T 3f67_A 78 HDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGK-LVGE-- 152 (241)
T ss_dssp CSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCC-CSCC--
T ss_pred hhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEecc-ccCC--
Confidence 1110 11111234678999999998887 788999999999999999999998887 5666666650 0000
Q ss_pred ceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCccc
Q psy1288 554 RWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLH 633 (1012)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~ 633 (1012)
...+ .+ .+|..
T Consensus 153 ---------------------------------------------------------~~~~-~~-----------~~~~~ 163 (241)
T 3f67_A 153 ---------------------------------------------------------KSLN-SP-----------KHPVD 163 (241)
T ss_dssp ---------------------------------------------------------CCSS-SC-----------CCHHH
T ss_pred ---------------------------------------------------------CccC-Cc-----------cCHHH
Confidence 0000 00 11222
Q ss_pred CCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc------chh
Q psy1288 634 NIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK------QFP 707 (1012)
Q Consensus 634 ~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~------~~~ 707 (1012)
.+. +.+.| +|++||..|..+++.++.++...+.++ +..+.+.++++++|++...... ..+
T Consensus 164 ~~~------~~~~P-~l~~~g~~D~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 229 (241)
T 3f67_A 164 IAV------DLNAP-VLGLYGAKDASIPQDTVETMRQALRAA-------NATAEIVVYPEADHAFNADYRASYHEESAKD 229 (241)
T ss_dssp HGG------GCCSC-EEEEEETTCTTSCHHHHHHHHHHHHHT-------TCSEEEEEETTCCTTTTCTTSTTCCHHHHHH
T ss_pred hhh------hcCCC-EEEEEecCCCCCCHHHHHHHHHHHHHc-------CCCcEEEEECCCCcceecCCCCCCCHHHHHH
Confidence 222 45667 999999999999999999999999988 7889999999999998643111 123
Q ss_pred hhhHHHHHHHH
Q psy1288 708 LTIPVIYFYLT 718 (1012)
Q Consensus 708 ~~~~~~~fl~~ 718 (1012)
.+..+++||.+
T Consensus 230 ~~~~~~~fl~~ 240 (241)
T 3f67_A 230 GWQRMLAWFAQ 240 (241)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 45566777764
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-16 Score=175.57 Aligned_cols=248 Identities=15% Similarity=0.120 Sum_probs=159.5
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh-CCeEEEEEcCCCCCCCch
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD-FNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~ 478 (1012)
.+..+.+.+++.|| .|++.++.|.+. +.|+||++|||................+++ .|+.|+.+|+|+.++..
T Consensus 60 ~~~~~~~~~~~~~g-~i~~~~~~p~~~----~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~- 133 (326)
T 3ga7_A 60 SMTTRTCAVPTPYG-DVTTRLYSPQPT----SQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR- 133 (326)
T ss_dssp CCEEEEEEECCTTS-CEEEEEEESSSS----CSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC-
T ss_pred CcceEEEEeecCCC-CeEEEEEeCCCC----CCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC-
Confidence 35568899999999 899999999752 349999999986333332322334455654 69999999999876531
Q ss_pred hHHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCCc------eeEEEEccCCCcc
Q psy1288 479 RWHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPDL------FGAAIVQVGNPEI 549 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~------f~a~v~~~~~~~i 549 (1012)
....++|+.++++|+.++. .+|+++|+++|+|+||.+++.++.+.++. +++++...| +
T Consensus 134 ----------~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~---~ 200 (326)
T 3ga7_A 134 ----------YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYG---L 200 (326)
T ss_dssp ----------TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESC---C
T ss_pred ----------CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEecc---c
Confidence 2345689999999999874 46899999999999999999988876654 788888877 2
Q ss_pred ccCcceeeeecccccccCcccccccCCCCcccc-cCC-CCcchhhhhhhhhhhcccccccccccccc-CCCCChHHHHHH
Q psy1288 550 SDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKI-EGK-LPLTQVVHKVLDMLKFNKFTIGYFWESDY-GSPANSSQFEYL 626 (1012)
Q Consensus 550 ~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~-~~~-~plt~~~~~~~d~~~~~~~~~g~~~~~~~-g~p~~~~~~~~~ 626 (1012)
.+. ........ ... ..++.. .+..+. ..| +...
T Consensus 201 ~~~----------------------~~~~~~~~~~~~~~~l~~~-----~~~~~~---------~~~~~~~~-------- 236 (326)
T 3ga7_A 201 YGL----------------------QDSVSRRLFGGAWDGLTRE-----DLDMYE---------KAYLRNDE-------- 236 (326)
T ss_dssp CSC----------------------SCCHHHHHCCCTTTTCCHH-----HHHHHH---------HHHCSSGG--------
T ss_pred ccc----------------------CCChhHhhhcCCCCCCCHH-----HHHHHH---------HHhCCCCC--------
Confidence 221 00000000 000 000000 000000 000 0000
Q ss_pred HcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---c
Q psy1288 627 LGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---T 703 (1012)
Q Consensus 627 ~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~ 703 (1012)
...+|+...... . .....|++|++||+.|+.+ .++.+++++|+++ +.+++++++++++|++.... .
T Consensus 237 ~~~~~~~~~~~~-~-~~~~~~P~li~~G~~D~~~--~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~f~~~~~~~~ 305 (326)
T 3ga7_A 237 DRESPWYCLFNN-D-LTRDVPPCFIASAEFDPLI--DDSRLLHQTLQAH-------QQPCEYKMYPGTLHAFLHYSRMMT 305 (326)
T ss_dssp GGGCTTTSGGGS-C-CSSCCCCEEEEEETTCTTH--HHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGGTTTCH
T ss_pred ccCCcccCCCcc-h-hhcCCCCEEEEecCcCcCH--HHHHHHHHHHHHC-------CCcEEEEEeCCCccchhhhcCccH
Confidence 011222211000 0 0124556999999999987 4888899999998 89999999999999985422 1
Q ss_pred cchhhhhHHHHHHHHhCC
Q psy1288 704 KQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l~ 721 (1012)
...+.+.++.+||.++++
T Consensus 306 ~~~~~~~~~~~fl~~~l~ 323 (326)
T 3ga7_A 306 IADDALQDGARFFMARMK 323 (326)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 234667788899988764
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=172.51 Aligned_cols=235 Identities=13% Similarity=0.058 Sum_probs=157.0
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+.+.||..+.+++..+......++.|+||++|||................++++||.|+.+|+||.+.... + .
T Consensus 19 ~~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~-~------~ 91 (276)
T 3hxk_A 19 FSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN-Y------N 91 (276)
T ss_dssp CCCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC-S------C
T ss_pred ccCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC-C------C
Confidence 45678888877766554332347789999999975333333333344566777899999999999865210 0 0
Q ss_pred CCcchHhHHHHHHHHHHHcCC---CCCCcEEEEecChHHHHHHHHHhh-CCCceeEEEEccCCCccccCcceeeeecccc
Q psy1288 488 NKQNVFDDFQCAAEYLIASGY---TQSSRLAIQGGSNGGLLTAACINQ-RPDLFGAAIVQVGNPEISDCGRWLIVHTMKD 563 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~---~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~ 563 (1012)
.......|+.++++++.+... +++++|+++|+|+||.+++.++.+ .+..++++++.+| +.++
T Consensus 92 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p---~~~~----------- 157 (276)
T 3hxk_A 92 FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYP---VTSF----------- 157 (276)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEE---CCBT-----------
T ss_pred cCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecC---cccH-----------
Confidence 111346788999999988742 688999999999999999998887 6788999999887 2111
Q ss_pred cccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccC
Q psy1288 564 CKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKG 643 (1012)
Q Consensus 564 ~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~ 643 (1012)
..... ..+ .+ ..+- +.. +..++|...+. .
T Consensus 158 -----------~~~~~-----~~~---------------------~~-~~~~-~~~------~~~~~~~~~~~------~ 186 (276)
T 3hxk_A 158 -----------TFGWP-----SDL---------------------SH-FNFE-IEN------ISEYNISEKVT------S 186 (276)
T ss_dssp -----------TSSCS-----SSS---------------------SS-SCCC-CSC------CGGGBTTTTCC------T
T ss_pred -----------HhhCC-----cch---------------------hh-hhcC-chh------hhhCChhhccc------c
Confidence 00000 000 00 0000 000 02334555554 4
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc-----------cchhhhhHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT-----------KQFPLTIPV 712 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~-----------~~~~~~~~~ 712 (1012)
.+.| +|++||..|..|++.++..++.+|+.. +.++.+.++++++|++..... ...+.+..+
T Consensus 187 ~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (276)
T 3hxk_A 187 STPP-TFIWHTADDEGVPIYNSLKYCDRLSKH-------QVPFEAHFFESGPHGVSLANRTTAPSDAYCLPSVHRWVSWA 258 (276)
T ss_dssp TSCC-EEEEEETTCSSSCTHHHHHHHHHHHTT-------TCCEEEEEESCCCTTCTTCSTTSCSSSTTCCHHHHTHHHHH
T ss_pred CCCC-EEEEecCCCceeChHHHHHHHHHHHHc-------CCCeEEEEECCCCCCccccCccccccccccCchHHHHHHHH
Confidence 5666 999999999999999999999999988 888999999999999865333 123455566
Q ss_pred HHHHHHhCCC
Q psy1288 713 IYFYLTSGPV 722 (1012)
Q Consensus 713 ~~fl~~~l~~ 722 (1012)
.+||.++.+.
T Consensus 259 ~~wl~~~~~~ 268 (276)
T 3hxk_A 259 SDWLERQIKN 268 (276)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHhCccc
Confidence 6888887544
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=180.45 Aligned_cols=220 Identities=19% Similarity=0.183 Sum_probs=166.2
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCC--------cCh-hHHHHHHhCCeEEEEEcCC
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG--------FSV-TKIVFLRDFNGIYAIPNIR 471 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~--------~~~-~~~~~l~~~G~~v~~~d~R 471 (1012)
..+.+.+.+. ||..+.+.++.|+++...++.|+|+++||+.+...... +.. ....+....|+.++.++.|
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~ 222 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCP 222 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCC
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCC
Confidence 3567788888 99999999999998767788999999999864432211 100 0122334568899999999
Q ss_pred CCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCcccc
Q psy1288 472 GGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISD 551 (1012)
Q Consensus 472 G~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d 551 (1012)
|.++++..|...+..........|+.+.++++.++..+++++|+++|+|+||++++.++.++|++|+++++.+| ..+
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg---~~~ 299 (380)
T 3doh_A 223 PNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICG---GGD 299 (380)
T ss_dssp TTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESC---CCC
T ss_pred CCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecC---CCC
Confidence 99988888876444444456778999999999988778999999999999999999999999999999999988 000
Q ss_pred CcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCc
Q psy1288 552 CGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSP 631 (1012)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP 631 (1012)
+ .
T Consensus 300 -----------------------------------------------------------------~---~---------- 301 (380)
T 3doh_A 300 -----------------------------------------------------------------V---S---------- 301 (380)
T ss_dssp -----------------------------------------------------------------G---G----------
T ss_pred -----------------------------------------------------------------h---h----------
Confidence 0 0
Q ss_pred ccCCCCCCcccCCC-CCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCC---CCCCCCccccchh
Q psy1288 632 LHNIQGPDELKGKQ-YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA---GHGGGKPTTKQFP 707 (1012)
Q Consensus 632 ~~~~~~p~~~~~~~-~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~---gHg~~~~~~~~~~ 707 (1012)
... ..+ .| +|++||..|..+++.++.+++.+|+++ +..+.+.+++++ +|++.... ....
T Consensus 302 --~~~------~~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~~~~~~h~~h~~~~H~-~~~~ 364 (380)
T 3doh_A 302 --KVE------RIKDIP-IWVFHAEDDPVVPVENSRVLVKKLAEI-------GGKVRYTEYEKGFMEKHGWDPHG-SWIP 364 (380)
T ss_dssp --GGG------GGTTSC-EEEEEETTCSSSCTHHHHHHHHHHHHT-------TCCEEEEEECTTHHHHTTCCTTC-THHH
T ss_pred --hhh------hccCCC-EEEEecCCCCccCHHHHHHHHHHHHHC-------CCceEEEEecCCcccCCCCCCch-hHHH
Confidence 000 122 45 999999999999999999999999998 888999999999 55443221 1122
Q ss_pred hhh--HHHHHHHHh
Q psy1288 708 LTI--PVIYFYLTS 719 (1012)
Q Consensus 708 ~~~--~~~~fl~~~ 719 (1012)
.+. ++++||.++
T Consensus 365 ~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 365 TYENQEAIEWLFEQ 378 (380)
T ss_dssp HHTCHHHHHHHHTC
T ss_pred hcCCHHHHHHHHhh
Confidence 333 778898865
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-16 Score=168.59 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=151.8
Q ss_pred eEEEEEECCCCceEEEEEEEeCC---CCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKG---AQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~---~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
.+.+.+ ..+|..+.+.++.|+. +...++.|+||++|||....... .|. .....|+++||.|+.+|+||.|..+.
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~g~~~~ 81 (277)
T 3bxp_A 4 VEQRTL-NTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEA-PIATRMMAAGMHTVVLNYQLIVGDQS 81 (277)
T ss_dssp EEEEEE-CSTTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHH-HHHHHHHHTTCEEEEEECCCSTTTCC
T ss_pred eEEEEe-ccCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccch-HHHHHHHHCCCEEEEEecccCCCCCc
Confidence 455555 4578889999999973 12356789999999974332222 232 23455666899999999999662211
Q ss_pred hHHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--------------CCceeEEE
Q psy1288 479 RWHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--------------PDLFGAAI 541 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------------p~~f~a~v 541 (1012)
.......|+.++++++.+.. .+++++++++|+|+||.+++.++.+. +..+++++
T Consensus 82 ---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v 152 (277)
T 3bxp_A 82 ---------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAII 152 (277)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEE
T ss_pred ---------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEE
Confidence 12245678888888888763 25778999999999999999998874 67789999
Q ss_pred EccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChH
Q psy1288 542 VQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSS 621 (1012)
Q Consensus 542 ~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~ 621 (1012)
+.+| +.+ +... .+... ..+. ..++
T Consensus 153 ~~~p---~~~----------------------~~~~--------~~~~~----~~~~-------------~~~~------ 176 (277)
T 3bxp_A 153 LGYP---VID----------------------LTAG--------FPTTS----AARN-------------QITT------ 176 (277)
T ss_dssp EESC---CCB----------------------TTSS--------SSSSH----HHHH-------------HHCS------
T ss_pred EeCC---ccc----------------------CCCC--------CCCcc----ccch-------------hccc------
Confidence 9888 111 0000 00000 0000 0000
Q ss_pred HHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCc
Q psy1288 622 QFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 701 (1012)
Q Consensus 622 ~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~ 701 (1012)
.+...+|...+. ....| +|++||..|..+++.++.++.++|..+ +.++.++++++++|++...
T Consensus 177 ---~~~~~~~~~~~~------~~~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------~~~~~~~~~~~~~H~~~~~ 239 (277)
T 3bxp_A 177 ---DARLWAAQRLVT------PASKP-AFVWQTATDESVPPINSLKYVQAMLQH-------QVATAYHLFGSGIHGLALA 239 (277)
T ss_dssp ---CGGGSBGGGGCC------TTSCC-EEEEECTTCCCSCTHHHHHHHHHHHHT-------TCCEEEEECCCC-------
T ss_pred ---hhhhcCHhhccc------cCCCC-EEEEeeCCCCccChHHHHHHHHHHHHC-------CCeEEEEEeCCCCcccccc
Confidence 012234444443 34556 999999999999999999999999988 8889999999999987543
Q ss_pred cc-------------cchhhhhHHHHHHHHhC
Q psy1288 702 TT-------------KQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 702 ~~-------------~~~~~~~~~~~fl~~~l 720 (1012)
.. ...+.+..+.+||.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 240 NHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 21 12345667778988763
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=176.96 Aligned_cols=250 Identities=20% Similarity=0.225 Sum_probs=165.1
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
..+..+.+.+.+.||.+|.++++.|++. .++.|+||++||+.+.. .+..... .+.++||+|+++|+||.++.+.
T Consensus 64 ~~~~~~~~~~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~---~~~~~~~-~l~~~G~~v~~~d~rG~g~s~~ 137 (337)
T 1vlq_A 64 KTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGR---GFPHDWL-FWPSMGYICFVMDTRGQGSGWL 137 (337)
T ss_dssp SSEEEEEEEEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCC---CCGGGGC-HHHHTTCEEEEECCTTCCCSSS
T ss_pred CCeEEEEEEEEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCC---CCchhhc-chhhCCCEEEEecCCCCCCccc
Confidence 4456889999999999999999999863 46789999999976543 2222222 3445799999999999885432
Q ss_pred hH-----------------HhhhhcCCC----cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCce
Q psy1288 479 RW-----------------HDGGRLLNK----QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF 537 (1012)
Q Consensus 479 ~~-----------------~~~~~~~~~----~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f 537 (1012)
.. ...+..... ...++|+.++++++.++..+++++|+++|+|+||.+++.++.+.|. +
T Consensus 138 ~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v 216 (337)
T 1vlq_A 138 KGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKK-A 216 (337)
T ss_dssp CCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCSS-C
T ss_pred CCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCCC-c
Confidence 10 000000000 1457899999999999888889999999999999999999998884 7
Q ss_pred eEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCC
Q psy1288 538 GAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSP 617 (1012)
Q Consensus 538 ~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p 617 (1012)
+++++.+| .+.++.. ...+.. ..+... +...+ . ..+
T Consensus 217 ~~~vl~~p--~~~~~~~----------------~~~~~~--------~~~~~~----~~~~~------------~--~~~ 252 (337)
T 1vlq_A 217 KALLCDVP--FLCHFRR----------------AVQLVD--------THPYAE----ITNFL------------K--THR 252 (337)
T ss_dssp CEEEEESC--CSCCHHH----------------HHHHCC--------CTTHHH----HHHHH------------H--HCT
T ss_pred cEEEECCC--cccCHHH----------------HHhcCC--------CcchHH----HHHHH------------H--hCc
Confidence 88887766 1111100 000000 000000 00000 0 011
Q ss_pred C-ChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCC
Q psy1288 618 A-NSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 696 (1012)
Q Consensus 618 ~-~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gH 696 (1012)
. ....+..+..++|...+. .++.| +|++||..|..+++.++.++++++. .++.+.++++++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~------~i~~P-~lii~G~~D~~~p~~~~~~~~~~l~----------~~~~~~~~~~~gH 315 (337)
T 1vlq_A 253 DKEEIVFRTLSYFDGVNFAA------RAKIP-ALFSVGLMDNICPPSTVFAAYNYYA----------GPKEIRIYPYNNH 315 (337)
T ss_dssp TCHHHHHHHHHTTCHHHHHT------TCCSC-EEEEEETTCSSSCHHHHHHHHHHCC----------SSEEEEEETTCCT
T ss_pred hhHHHHHHhhhhccHHHHHH------HcCCC-EEEEeeCCCCCCCchhHHHHHHhcC----------CCcEEEEcCCCCC
Confidence 1 123334455566765555 56767 9999999999999999887776653 2578999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHhCC
Q psy1288 697 GGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 697 g~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
++.. .+....+++||.++++
T Consensus 316 ~~~~-----~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 316 EGGG-----SFQAVEQVKFLKKLFE 335 (337)
T ss_dssp TTTH-----HHHHHHHHHHHHHHHC
T ss_pred CCcc-----hhhHHHHHHHHHHHHh
Confidence 9632 2345677789988764
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=170.22 Aligned_cols=257 Identities=15% Similarity=0.117 Sum_probs=157.8
Q ss_pred CCceEEEEEECCCCceEEEEEEE-eCCC--------------------CCCCCCcEEEEEcCCCCCCCCCC---cChhHH
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILS-RKGA--------------------QLDGNNPCILYGYGGFAVSLQPG---FSVTKI 455 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~-p~~~--------------------~~~~~~P~vv~~hGg~~~~~~~~---~~~~~~ 455 (1012)
.+..+.+.+.+.|| +.+.++. |... ...++.|+||++|||........ |.. ..
T Consensus 61 ~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~-~~ 137 (365)
T 3ebl_A 61 GVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDS-LC 137 (365)
T ss_dssp TEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHH-HH
T ss_pred CCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHH-HH
Confidence 45678888888888 6667776 7653 23467899999999864333222 222 33
Q ss_pred HHHHh-CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC----CCCCC-cEEEEecChHHHHHHHH
Q psy1288 456 VFLRD-FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG----YTQSS-RLAIQGGSNGGLLTAAC 529 (1012)
Q Consensus 456 ~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~~ 529 (1012)
..|+. .|++|+.+|+|+..+.. ....++|+.++++|+.++. .+|++ +|+|+|+|+||.+++.+
T Consensus 138 ~~la~~~g~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~ 206 (365)
T 3ebl_A 138 RRFVKLSKGVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHV 206 (365)
T ss_dssp HHHHHHHTSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHH
Confidence 44544 49999999999876432 2345789999999999765 57898 99999999999999988
Q ss_pred HhhCCC---ceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCccc-ccCCCCc-chhhhhhhhhhhcccc
Q psy1288 530 INQRPD---LFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRK-IEGKLPL-TQVVHKVLDMLKFNKF 604 (1012)
Q Consensus 530 ~~~~p~---~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~-~~~~~pl-t~~~~~~~d~~~~~~~ 604 (1012)
+.+.++ .++++|+.+| +.+ ........ .....++ +.. ..+.
T Consensus 207 a~~~~~~~~~~~g~vl~~p---~~~----------------------~~~~~~~~~~~~~~~~~~~~---~~~~------ 252 (365)
T 3ebl_A 207 AVRAADEGVKVCGNILLNA---MFG----------------------GTERTESERRLDGKYFVTLQ---DRDW------ 252 (365)
T ss_dssp HHHHHHTTCCCCEEEEESC---CCC----------------------CSSCCHHHHHHTTTSSCCHH---HHHH------
T ss_pred HHHHHhcCCceeeEEEEcc---ccC----------------------CCcCChhhhhcCCCcccCHH---HHHH------
Confidence 876554 6899999988 222 11000000 0000000 000 0000
Q ss_pred ccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCC
Q psy1288 605 TIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTN 684 (1012)
Q Consensus 605 ~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~ 684 (1012)
.|....+...... ....+|+.... ..+.+..+|++|++||+.|..+ .++.++.++|+++ +.
T Consensus 253 ----~~~~~~~~~~~~~----~~~~~p~~~~~--~~l~~~~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~-------g~ 313 (365)
T 3ebl_A 253 ----YWKAYLPEDADRD----HPACNPFGPNG--RRLGGLPFAKSLIIVSGLDLTC--DRQLAYADALRED-------GH 313 (365)
T ss_dssp ----HHHHHSCTTCCTT----STTTCTTSTTC--CCCTTSCCCCEEEEEETTSTTH--HHHHHHHHHHHHT-------TC
T ss_pred ----HHHHhCCCCCCCC----CcccCCCCCcc--hhhccCCCCCEEEEEcCcccch--hHHHHHHHHHHHC-------CC
Confidence 0000000000000 00112322110 0112335677999999999654 4668889999988 89
Q ss_pred cEEEEEeCCCCCCCCCc--cccchhhhhHHHHHHHHhCCCC
Q psy1288 685 PLLIRIETKAGHGGGKP--TTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 685 ~~~l~~~p~~gHg~~~~--~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
++++.++++++|++... .....+.+.++.+||.++++..
T Consensus 314 ~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 354 (365)
T 3ebl_A 314 HVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYG 354 (365)
T ss_dssp CEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC--
T ss_pred CEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998622 1223466778889999998763
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=174.36 Aligned_cols=305 Identities=14% Similarity=0.099 Sum_probs=163.8
Q ss_pred cccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEEEeccCC-CCCC---CCCceEEEEEECCCCceEEEEEEEeC
Q psy1288 349 KKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIFREIKVP-DFDP---SLFETKQVFYPSKDGTKIPMFILSRK 424 (1012)
Q Consensus 349 spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~-~~~~---~~~~~~~v~~~s~DG~~i~~~l~~p~ 424 (1012)
+++.++++|.+.++..+...++++. +|+. .+.+..+..+ ..++ ..+..+.+.+.+ |..+.+.++.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~-~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~ 74 (338)
T 2o7r_A 4 DHLETTGSSDPNTNLLKYLPIVLNP------DRTI-TRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPR 74 (338)
T ss_dssp --------------CTTTCSCEECT------TSCE-ECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEG
T ss_pred CCCCCceeeccCcccccccceEECC------CCeE-EecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCC
Confidence 3456678887777767666666665 3421 1112222222 1232 346678888875 566788888887
Q ss_pred CC-CCCCCCcEEEEEcCCCCCCCCCC---cChhHHHHHH-hCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHH
Q psy1288 425 GA-QLDGNNPCILYGYGGFAVSLQPG---FSVTKIVFLR-DFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA 499 (1012)
Q Consensus 425 ~~-~~~~~~P~vv~~hGg~~~~~~~~---~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~ 499 (1012)
+. ...++.|+||++|||........ |... ...|+ +.|++|+.+|+||.++. .....++|+.++
T Consensus 75 ~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~-~~~la~~~g~~vv~~d~rg~~~~-----------~~~~~~~d~~~~ 142 (338)
T 2o7r_A 75 HALYNSAKLPLVVYFHGGGFILFSAASTIFHDF-CCEMAVHAGVVIASVDYRLAPEH-----------RLPAAYDDAMEA 142 (338)
T ss_dssp GGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHH-HHHHHHHHTCEEEEEECCCTTTT-----------CTTHHHHHHHHH
T ss_pred CCCcCCCCceEEEEEcCCcCcCCCCCchhHHHH-HHHHHHHCCcEEEEecCCCCCCC-----------CCchHHHHHHHH
Confidence 64 34577899999999864443322 3333 33444 56999999999997653 123457899999
Q ss_pred HHHHHHcC------CCCCCcEEEEecChHHHHHHHHHhhCCC--------ceeEEEEccCCCccccCcceeeeecccccc
Q psy1288 500 AEYLIASG------YTQSSRLAIQGGSNGGLLTAACINQRPD--------LFGAAIVQVGNPEISDCGRWLIVHTMKDCK 565 (1012)
Q Consensus 500 ~~~l~~~~------~~d~~~i~i~G~S~GG~l~~~~~~~~p~--------~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~ 565 (1012)
++|+.++. .+++++++++|+|+||.+++.++.++|+ +++++|+..| ..+...
T Consensus 143 ~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p---~~~~~~----------- 208 (338)
T 2o7r_A 143 LQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEP---GFGGSK----------- 208 (338)
T ss_dssp HHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESC---CCCCSS-----------
T ss_pred HHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECC---ccCCCc-----------
Confidence 99999863 2577899999999999999999988887 8999999887 111000
Q ss_pred cCcccccccCCCCcccccCCCCc-chhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCC
Q psy1288 566 NNMFHFCDLDTIPDRKIEGKLPL-TQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGK 644 (1012)
Q Consensus 566 ~~~~~~~dl~~~~~~~~~~~~pl-t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~ 644 (1012)
...... .....++ ... ..+......+..+......+.++.. ..+|...+. .+...
T Consensus 209 -~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~l~~~ 264 (338)
T 2o7r_A 209 -RTGSEL---------RLANDSRLPTF---VLDLIWELSLPMGADRDHEYCNPTA--------ESEPLYSFD---KIRSL 264 (338)
T ss_dssp -CCHHHH---------HTTTCSSSCHH---HHHHHHHHHSCTTCCTTSTTTCCC------------CCTHHH---HHHHH
T ss_pred -CChhhh---------ccCCCcccCHH---HHHHHHHHhCCCCCCCCCcccCCCC--------CCcccccHh---hhcCC
Confidence 000000 0000000 000 0000000000000000000000000 000000000 00012
Q ss_pred CCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc-ccchhhhhHHHHHHHHhCCC
Q psy1288 645 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT-TKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 645 ~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~-~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.+| +|++||+.|..++ ++.++.++|+++ +..++++++++++|++.... ....+....+.+|+.++++.
T Consensus 265 ~~P-~Lvi~G~~D~~~~--~~~~~~~~l~~~-------~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~~ 333 (338)
T 2o7r_A 265 GWR-VMVVGCHGDPMID--RQMELAERLEKK-------GVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCTT 333 (338)
T ss_dssp TCE-EEEEEETTSTTHH--HHHHHHHHHHHT-------TCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC-----
T ss_pred CCC-EEEEECCCCcchH--HHHHHHHHHHHC-------CCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhccc
Confidence 234 9999999999876 567788888887 78899999999999975421 11235566777899877643
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-16 Score=188.42 Aligned_cols=293 Identities=13% Similarity=0.045 Sum_probs=177.4
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC----CC-CCcChhHH---HHHHhCCeEEEEEcC
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS----LQ-PGFSVTKI---VFLRDFNGIYAIPNI 470 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~----~~-~~~~~~~~---~~l~~~G~~v~~~d~ 470 (1012)
..+..+.+.+++.||.+|.+.++.|++. ++.|+||++||..... .. ..|..... ++++++||+|+.+|+
T Consensus 21 ~~~~~~~v~i~~~DG~~L~~~~~~P~~~---~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~ 97 (615)
T 1mpx_A 21 NDYIKREVMIPMRDGVKLHTVIVLPKGA---KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDV 97 (615)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEEEECCCCCEEEEEEEeCCCC---CCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECC
Confidence 4566788999999999999999999863 5789999999643221 11 11111111 566778999999999
Q ss_pred CCCCCCchhHHhhhh-----cCCCcchHhHHHHHHHHHHHc-CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 471 RGGGEYGERWHDGGR-----LLNKQNVFDDFQCAAEYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 471 RG~g~~g~~~~~~~~-----~~~~~~~~~D~~a~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
||+++.+..+..... ..++....+|+.++++||.++ ++.+ .+|+++|+|+||++++.++...|+.++++|+.+
T Consensus 98 RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~ 176 (615)
T 1mpx_A 98 RGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 176 (615)
T ss_dssp TTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecC
Confidence 999887665533211 112226789999999999998 7766 599999999999999999888899999999999
Q ss_pred CCCcccc-Cc-ceeeeecccccccCcccc---cccCCCCcccccCCCCc-ch-hhhhhhhhh---hccc-c-cccccccc
Q psy1288 545 GNPEISD-CG-RWLIVHTMKDCKNNMFHF---CDLDTIPDRKIEGKLPL-TQ-VVHKVLDML---KFNK-F-TIGYFWES 612 (1012)
Q Consensus 545 ~~~~i~d-~~-~~~~~~~~~~~~~~~~~~---~dl~~~~~~~~~~~~pl-t~-~~~~~~d~~---~~~~-~-~~g~~~~~ 612 (1012)
+ ++| +. ..+...+.... ..+..+ .-....+. .++. .. .....+... .+.. + .....|..
T Consensus 177 ~---~~d~~~~~~~~~~G~~~l-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 247 (615)
T 1mpx_A 177 P---MIDGWMGDDWFNYGAFRQ-VNFDYFTGQLSKRGKGA-----GIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWH 247 (615)
T ss_dssp C---CCCTTTTSSSEETTEEBG-GGHHHHHHHHSSSSCCC-----CCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHH
T ss_pred C---ccccccccccccCCeehh-hhHHHHHHhhcccCCcc-----cccccchhHHHHHhhcCCccchhhhhccccchHHH
Confidence 9 776 33 22211111100 000000 00000000 0000 00 000000000 0000 0 00000111
Q ss_pred cc-CCCCChHHHHHHHcCCcccCCCCCCcccC--CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCC---cE
Q psy1288 613 DY-GSPANSSQFEYLLGYSPLHNIQGPDELKG--KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTN---PL 686 (1012)
Q Consensus 613 ~~-g~p~~~~~~~~~~~~sP~~~~~~p~~~~~--~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~---~~ 686 (1012)
+| ..+.. -++|...||..++. + ++.| +|++||..|.+ +..++.+++.+|++. +. ++
T Consensus 248 ~~~~~~~~---d~~w~~~Sp~~~~~------~~~I~~P-~Lii~G~~D~~-~~~~~~~~~~aL~~~-------g~p~~~~ 309 (615)
T 1mpx_A 248 KLTEHAAY---DAFWQEQALDKVMA------RTPLKVP-TMWLQGLWDQE-DMWGAIHSYAAMEPR-------DKRNTLN 309 (615)
T ss_dssp HHHHTCSS---CHHHHTTCHHHHHH------TSCCCSC-EEEEEETTCSS-CSSHHHHHHHHHGGG-------CTTSSSE
T ss_pred HHHhCCCc---ChhhhhcChhhhhh------ccCCCCC-EEEeecccCcc-ccccHHHHHHHHHhh-------cCCCcCC
Confidence 11 11111 14577788876665 6 8889 99999999998 888999999999987 53 48
Q ss_pred EEEEeCCCCCCCCC-----c----ccc--c-hhhhhHHHHHHHHhCCCC
Q psy1288 687 LIRIETKAGHGGGK-----P----TTK--Q-FPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 687 ~l~~~p~~gHg~~~-----~----~~~--~-~~~~~~~~~fl~~~l~~~ 723 (1012)
.+.+.|. +|++.. . +.. . .......++|++++|+..
T Consensus 310 ~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 310 YLVMGPW-RHSQVNYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp EEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred EEEECCC-CCCCccccccccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 8888887 598621 0 000 0 011345679999998753
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=169.78 Aligned_cols=247 Identities=16% Similarity=0.075 Sum_probs=157.9
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
.+..+.+.+.+.||..|++.++.|.+ ++.|+||++|||..... ...+......+..+.|+.|+.+|+|+..+..
T Consensus 57 ~~~~~~~~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~- 131 (317)
T 3qh4_A 57 GVAVADDVVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP- 131 (317)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC-
T ss_pred cceEEEEEecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC-
Confidence 45678889999999999999999975 56899999999753322 2234433344444569999999999876532
Q ss_pred hHHhhhhcCCCcchHhHHHHHHHHHHHc---CCCCCCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCCcccc
Q psy1288 479 RWHDGGRLLNKQNVFDDFQCAAEYLIAS---GYTQSSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNPEISD 551 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~a~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~~i~d 551 (1012)
....++|+.++++|+.++ -.+++++|+|+|+|+||.+++.++.+.++ .+++.++.+| +.+
T Consensus 132 ----------~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p---~~~ 198 (317)
T 3qh4_A 132 ----------YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQP---VLD 198 (317)
T ss_dssp ----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESC---CCC
T ss_pred ----------CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECc---eec
Confidence 234567999999999886 34688999999999999999988876544 4788888888 222
Q ss_pred CcceeeeecccccccCcccccccCCCCcccccCCCC-cchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCC
Q psy1288 552 CGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLP-LTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYS 630 (1012)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~p-lt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~s 630 (1012)
. ............+ ++.. .... .|....+.... ....+
T Consensus 199 ~----------------------~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~~~------~~~~~ 237 (317)
T 3qh4_A 199 D----------------------RPTASRSEFRATPAFDGE---AASL----------MWRHYLAGQTP------SPESV 237 (317)
T ss_dssp S----------------------SCCHHHHHTTTCSSSCHH---HHHH----------HHHHHHTTCCC------CTTTC
T ss_pred C----------------------CCCcCHHHhcCCCCcCHH---HHHH----------HHHHhcCCCCC------CcccC
Confidence 1 1000000000000 0000 0000 00000000000 00112
Q ss_pred cccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCc---cccchh
Q psy1288 631 PLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP---TTKQFP 707 (1012)
Q Consensus 631 P~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~---~~~~~~ 707 (1012)
|..... -...|++|++||+.|+.++ ++..+..+|+++ +.+++++++++++|+|... .....+
T Consensus 238 p~~~~~------l~~lpP~li~~G~~D~~~~--~~~~~a~~l~~~-------g~~~~l~~~~g~~H~f~~~~~~~~~~~~ 302 (317)
T 3qh4_A 238 PGRRGQ------LAGLPATLITCGEIDPFRD--EVLDYAQRLLGA-------GVSTELHIFPRACHGFDSLLPEWTTSQR 302 (317)
T ss_dssp GGGCSC------CTTCCCEEEEEEEESTTHH--HHHHHHHHHHHT-------TCCEEEEEEEEEETTHHHHCTTSHHHHH
T ss_pred CCcccc------cCCCCceeEEecCcCCCch--hHHHHHHHHHHc-------CCCEEEEEeCCCccchhhhcCCchHHHH
Confidence 222211 2345569999999998764 778889999988 8999999999999997432 122245
Q ss_pred hhhHHHHHHHHhC
Q psy1288 708 LTIPVIYFYLTSG 720 (1012)
Q Consensus 708 ~~~~~~~fl~~~l 720 (1012)
.+.++.+||.+++
T Consensus 303 ~~~~~~~~l~~~l 315 (317)
T 3qh4_A 303 LFAMQGHALADAF 315 (317)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6677788998775
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=166.45 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=154.3
Q ss_pred eEEEEEECCCCceEEEEEEEeCCC---CCCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGA---QLDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~---~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
.+.+.+.+.+|..+.+.++ |+.. ...++.|+||++|||...... ..|. .....|+++||.|+.+|+||.++.+
T Consensus 19 ~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~~~~~- 95 (283)
T 3bjr_A 19 GMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAE-SLAMAFAGHGYQAFYLEYTLLTDQQ- 95 (283)
T ss_dssp SSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHH-HHHHHHHTTTCEEEEEECCCTTTCS-
T ss_pred CcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccH-HHHHHHHhCCcEEEEEeccCCCccc-
Confidence 4567788889988888888 7652 135678999999997522221 1122 2345666789999999999977542
Q ss_pred hHHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCCc-------------eeEEEE
Q psy1288 479 RWHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPDL-------------FGAAIV 542 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~-------------f~a~v~ 542 (1012)
........|+.++++++.+.. .+++++++++|+|+||.+++.++.++|+. ++++++
T Consensus 96 --------~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 167 (283)
T 3bjr_A 96 --------PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVL 167 (283)
T ss_dssp --------SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEE
T ss_pred --------cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEE
Confidence 111234568888889888763 36778999999999999999999998876 778888
Q ss_pred ccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHH
Q psy1288 543 QVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQ 622 (1012)
Q Consensus 543 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~ 622 (1012)
..| +.++.. .+.. .. ..+...++
T Consensus 168 ~~p---~~~~~~---------------------~~~~---------------~~-----------~~~~~~~~------- 190 (283)
T 3bjr_A 168 GYP---VISPLL---------------------GFPK---------------DD-----------ATLATWTP------- 190 (283)
T ss_dssp ESC---CCCTTS---------------------BC----------------------------------CCCC-------
T ss_pred cCC---cccccc---------------------cccc---------------cc-----------chHHHHHH-------
Confidence 777 111000 0000 00 00000011
Q ss_pred HHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc
Q psy1288 623 FEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 623 ~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~ 702 (1012)
.+...+|...+. ..+.| +|++||..|..+++.++..+..++..+ +.++.+.++++++|++....
T Consensus 191 --~~~~~~~~~~~~------~~~~P-~lii~G~~D~~~p~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~~~~~~ 254 (283)
T 3bjr_A 191 --TPNELAADQHVN------SDNQP-TFIWTTADDPIVPATNTLAYATALATA-------KIPYELHVFKHGPHGLALAN 254 (283)
T ss_dssp --CGGGGCGGGSCC------TTCCC-EEEEEESCCTTSCTHHHHHHHHHHHHT-------TCCEEEEEECCCSHHHHHHH
T ss_pred --HhHhcCHHHhcc------CCCCC-EEEEEcCCCCCCChHHHHHHHHHHHHC-------CCCeEEEEeCCCCccccccc
Confidence 012234444444 45667 999999999999999999999999988 88899999999999874322
Q ss_pred c-----------cchhhhhHHHHHHHHh
Q psy1288 703 T-----------KQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 703 ~-----------~~~~~~~~~~~fl~~~ 719 (1012)
. ...+....+.+||.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 255 AQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHHSCC-------CCHHHHHHHHHHHHT
T ss_pred ccccccccccchhHHHHHHHHHHHHhhc
Confidence 1 1124445666788653
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-16 Score=187.24 Aligned_cols=293 Identities=15% Similarity=0.054 Sum_probs=177.0
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC-CCCCcC-----hhH--H-HHHHhCCeEEEEEcC
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS-LQPGFS-----VTK--I-VFLRDFNGIYAIPNI 470 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~-----~~~--~-~~l~~~G~~v~~~d~ 470 (1012)
.+..+.+.+++.||.+|.+.++.|++. ++.|+||+.||..... ....+. ... . ++++++||+|+.+|+
T Consensus 34 ~~~~~~v~i~~~DG~~L~~~l~~P~~~---~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~ 110 (652)
T 2b9v_A 34 DYIKREVMVPMRDGVKLYTVIVIPKNA---RNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDI 110 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEEC
T ss_pred CcEEEEEEEECCCCcEEEEEEEecCCC---CCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEec
Confidence 356688999999999999999999863 5789999988632110 001111 111 1 566778999999999
Q ss_pred CCCCCCchhHHhhhh-----cCCCcchHhHHHHHHHHHHHc-CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 471 RGGGEYGERWHDGGR-----LLNKQNVFDDFQCAAEYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 471 RG~g~~g~~~~~~~~-----~~~~~~~~~D~~a~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
||+++.+..+..... ..++....+|+.++++||.++ ++.+ .+|+++|+|+||++++.++.+.|+.++++|+.+
T Consensus 111 RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~ 189 (652)
T 2b9v_A 111 RGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPES 189 (652)
T ss_dssp TTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEE
T ss_pred CcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEecc
Confidence 999988776543211 111236789999999999998 8777 599999999999999999988899999999998
Q ss_pred CCCccccCcc--eeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhh-hh------ccc-c-cc-cccccc
Q psy1288 545 GNPEISDCGR--WLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDM-LK------FNK-F-TI-GYFWES 612 (1012)
Q Consensus 545 ~~~~i~d~~~--~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~-~~------~~~-~-~~-g~~~~~ 612 (1012)
+ ++|+.. .+...+.... ..+..+..+...... . ...+.... ..... +. +.. + .. ...|..
T Consensus 190 ~---~~d~~~~d~~~~~G~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 261 (652)
T 2b9v_A 190 P---MVDGWMGDDWFHYGAFRQ-GAFDYFVSQMTARGG-G-NDIPRRDA--DDYTNFLKAGSAGSFATQAGLDQYPFWQR 261 (652)
T ss_dssp E---CCCTTTBSSSEETTEEBT-THHHHHHHHHSSSSC-C-CCCCCSSS--CHHHHHHHHCSHHHHHHHTTGGGCHHHHH
T ss_pred c---ccccccccceecCCchhh-hhHHHHHHhhhcccC-c-ccccccch--HHHHHHhhcCchhhHHHhhccccchHHHH
Confidence 8 666421 1111111100 000000000000000 0 00000000 00000 00 000 0 00 001111
Q ss_pred ccCCCCChHHHHHHHcCCcccCCCCCCcccC--CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCC--CcEEE
Q psy1288 613 DYGSPANSSQFEYLLGYSPLHNIQGPDELKG--KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQT--NPLLI 688 (1012)
Q Consensus 613 ~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~--~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~--~~~~l 688 (1012)
..+.|.. -++|...||..++. + ++.| +|++||..|.+ +..++.+++.+|+.. + +++.+
T Consensus 262 ~~~~p~~---d~yw~~~Sp~~~~~------~~~I~~P-vLiv~G~~D~~-~~~~~~~~~~aL~~~-------g~~~~~~l 323 (652)
T 2b9v_A 262 MHAHPAY---DAFWQGQALDKILA------QRKPTVP-MLWEQGLWDQE-DMWGAIHAWQALKDA-------DVKAPNTL 323 (652)
T ss_dssp HHHCCSS---SHHHHTTCHHHHHH------HHCCCSC-EEEEEETTCSS-CSSHHHHHHHHHHHT-------TCSSCEEE
T ss_pred HHhCCCC---ChHHhcCChhhhhh------cCCCCCC-EEEEeecCCcc-ccccHHHHHHHHHhc-------CCCCCCEE
Confidence 1122221 13467778876655 6 7888 99999999997 667899999999987 6 78888
Q ss_pred EEeCCCCCCCCC-----c----cccc---hhhhhHHHHHHHHhCCCC
Q psy1288 689 RIETKAGHGGGK-----P----TTKQ---FPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 689 ~~~p~~gHg~~~-----~----~~~~---~~~~~~~~~fl~~~l~~~ 723 (1012)
.+.|. +|++.. . +... .......++|++++|+..
T Consensus 324 vigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 324 VMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp EEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred EECCC-CCCCcccccccCCccccccccchhhhhhHHHHHHHHHhCCC
Confidence 88886 698621 0 1000 111455689999998753
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=167.30 Aligned_cols=236 Identities=17% Similarity=0.022 Sum_probs=148.2
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchH
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVF 493 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 493 (1012)
.|++.++.|++ .++.|+||++|||....... .+......+..+.|++|+.+|+|+.++.. ....+
T Consensus 66 ~i~~~~~~p~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-----------~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAPG---CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP-----------FPAAV 131 (322)
T ss_dssp TEEEEEEECTT---CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred CeEEEEEeCCC---CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC-----------CCcHH
Confidence 48888998876 35689999999985332221 12222233333459999999999876432 23456
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc----eeEEEEccCCCccccCcceeeeecccccccCcc
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL----FGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMF 569 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~ 569 (1012)
+|+.++++|+.++ .+++++|+|+|+|+||.+++.++.+.++. ++++++.+| +.++.... .
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p---~~~~~~~~------------~ 195 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISP---WADMTCTN------------D 195 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESC---CCCTTCCC------------T
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECC---EecCcCCC------------c
Confidence 8999999999998 66899999999999999999888765553 889999988 33211000 0
Q ss_pred cccccCCCCcccccCCCCc-chhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCc
Q psy1288 570 HFCDLDTIPDRKIEGKLPL-TQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPA 648 (1012)
Q Consensus 570 ~~~dl~~~~~~~~~~~~pl-t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~ 648 (1012)
.+..... ..++ +.. .... +.. ...+... .. ....+|....- ...|+
T Consensus 196 ~~~~~~~--------~~~~~~~~---~~~~--~~~--------~~~~~~~-~~----~~~~sp~~~~~-------~~~pP 242 (322)
T 3fak_A 196 SFKTRAE--------ADPMVAPG---GINK--MAA--------RYLNGAD-AK----HPYASPNFANL-------KGLPP 242 (322)
T ss_dssp HHHHTTT--------TCCSCCSS---HHHH--HHH--------HHHTTSC-TT----CTTTCGGGSCC-------TTCCC
T ss_pred CHHHhCc--------cCcccCHH---HHHH--HHH--------HhcCCCC-CC----CcccCCCcccc-------cCCCh
Confidence 0000000 0000 000 0000 000 0000000 00 01224442211 34556
Q ss_pred EEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccchhhhhHHHHHHHHhCCC
Q psy1288 649 TLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 649 vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+|++||+.|+. ..++..+.++|+++ +.++++.++++++|++.... ....+.+..+.+||.++++.
T Consensus 243 ~li~~g~~D~~--~~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 310 (322)
T 3fak_A 243 LLIHVGRDEVL--LDDSIKLDAKAKAD-------GVKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAA 310 (322)
T ss_dssp EEEEEETTSTT--HHHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhEEEcCcCcc--HHHHHHHHHHHHHc-------CCCEEEEEeCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999976 46788999999998 89999999999999985321 12345667788999998764
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-14 Score=152.59 Aligned_cols=209 Identities=12% Similarity=0.031 Sum_probs=150.8
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC--CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP--GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~--~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
.+.+.+.|| +|.++++.|.+ .+.|+||++||..+..... .........++++||.|+.+|+||.|.....+
T Consensus 25 ~~~~~~~~g-~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~~-- 97 (249)
T 2i3d_A 25 EVIFNGPAG-RLEGRYQPSKE----KSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF-- 97 (249)
T ss_dssp EEEEEETTE-EEEEEEECCSS----TTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC--
T ss_pred EEEEECCCc-eEEEEEEcCCC----CCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC--
Confidence 888999999 89998887754 5679999999963221111 11123456677789999999999977542221
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccc
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMK 562 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~ 562 (1012)
......++|+.++++++..... ++++++++|+|+||.+++.++.+.|+ ++++|+..+ ..
T Consensus 98 ----~~~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~---~~------------ 156 (249)
T 2i3d_A 98 ----DHGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAP---QP------------ 156 (249)
T ss_dssp ----CSSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESC---CT------------
T ss_pred ----CCccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcC---ch------------
Confidence 1122345789999999988754 77899999999999999999999888 888888877 00
Q ss_pred ccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCccc
Q psy1288 563 DCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELK 642 (1012)
Q Consensus 563 ~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~ 642 (1012)
+. + ....+.
T Consensus 157 ----------------------------------~~---------------~----------------~~~~~~------ 165 (249)
T 2i3d_A 157 ----------------------------------NT---------------Y----------------DFSFLA------ 165 (249)
T ss_dssp ----------------------------------TT---------------S----------------CCTTCT------
T ss_pred ----------------------------------hh---------------h----------------hhhhhc------
Confidence 00 0 001112
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
..+.| +|++||..|..+++..+.+++..+... .+..+.+.++++++|.+.. ...+....+.+||.+.+..
T Consensus 166 ~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~H~~~~---~~~~~~~~i~~fl~~~l~~ 235 (249)
T 2i3d_A 166 PCPSS-GLIINGDADKVAPEKDVNGLVEKLKTQ------KGILITHRTLPGANHFFNG---KVDELMGECEDYLDRRLNG 235 (249)
T ss_dssp TCCSC-EEEEEETTCSSSCHHHHHHHHHHHTTS------TTCCEEEEEETTCCTTCTT---CHHHHHHHHHHHHHHHHTT
T ss_pred ccCCC-EEEEEcCCCCCCCHHHHHHHHHHHhhc------cCCceeEEEECCCCccccc---CHHHHHHHHHHHHHHhcCC
Confidence 35677 999999999999999998888887752 1557899999999999863 2234456677899988754
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-15 Score=165.98 Aligned_cols=139 Identities=14% Similarity=0.092 Sum_probs=105.8
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
.+..+.+.+.+.||..+.++++.|++ ...++.|+||++||+.+.. ..|.......++++||.|+.+|+||.|.....
T Consensus 65 ~~~~~~~~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~ 141 (367)
T 2hdw_A 65 KVEHRKVTFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAVK--EQSSGLYAQTMAERGFVTLAFDPSYTGESGGQ 141 (367)
T ss_dssp TEEEEEEEEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCCT--TSHHHHHHHHHHHTTCEEEEECCTTSTTSCCS
T ss_pred CceeEEEEEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCcc--hhhHHHHHHHHHHCCCEEEEECCCCcCCCCCc
Confidence 34678899999999999999999987 3356789999999976432 23333345667778999999999998754321
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
... ........+|+.++++++.++..+++++++++|+|+||.+++.++.++| .++++|+.+|
T Consensus 142 ~~~---~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p 203 (367)
T 2hdw_A 142 PRN---VASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTM 203 (367)
T ss_dssp SSS---CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESC
T ss_pred Ccc---ccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEecc
Confidence 100 0011245679999999999988788899999999999999999999888 4788888876
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=164.59 Aligned_cols=249 Identities=16% Similarity=0.123 Sum_probs=158.7
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCC-CCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAV-SLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
.+..+.+.+.+.||.+|.++++.|++ .++.|+||++||+.+. .. .+.. .. .+.++|+.|+++|+||.++...
T Consensus 53 ~~~~~~~~~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~~~--~~~~-~~-~l~~~g~~v~~~d~rg~g~s~~ 125 (318)
T 1l7a_A 53 GVKVYRLTYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASYDG--EIHE-MV-NWALHGYATFGMLVRGQQRSED 125 (318)
T ss_dssp SEEEEEEEEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCSGG--GHHH-HH-HHHHTTCEEEEECCTTTSSSCC
T ss_pred CeEEEEEEEEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCCCCC--Cccc-cc-chhhCCcEEEEecCCCCCCCCC
Confidence 44577888988899999999999986 4678999999998654 22 2222 22 4455799999999999887654
Q ss_pred hHHhhhhcC-----CC---------cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 479 RWHDGGRLL-----NK---------QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 479 ~~~~~~~~~-----~~---------~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
.+...+... .+ ...++|+.++++++.++..+++++|+++|+|+||.+++.++...|+ +.+++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~~ 204 (318)
T 1l7a_A 126 TSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADY 204 (318)
T ss_dssp CCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEES
T ss_pred cccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEecC
Confidence 321100000 00 2347899999999999877888999999999999999999988887 45666665
Q ss_pred CCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCC-ChHHH
Q psy1288 545 GNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPA-NSSQF 623 (1012)
Q Consensus 545 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~-~~~~~ 623 (1012)
| .+.++.. ...... ..+... +..++ ..++.+. .....
T Consensus 205 p--~~~~~~~----------------~~~~~~--------~~~~~~----~~~~~------------~~~~~~~~~~~~~ 242 (318)
T 1l7a_A 205 P--YLSNFER----------------AIDVAL--------EQPYLE----INSFF------------RRNGSPETEVQAM 242 (318)
T ss_dssp C--CSCCHHH----------------HHHHCC--------STTTTH----HHHHH------------HHSCCHHHHHHHH
T ss_pred C--cccCHHH----------------HHhcCC--------cCccHH----HHHHH------------hccCCcccHHHHH
Confidence 5 1111100 000000 000000 00000 0011010 11122
Q ss_pred HHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc
Q psy1288 624 EYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT 703 (1012)
Q Consensus 624 ~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~ 703 (1012)
..+..+++...+. .++.| +|++||..|..+++..+.+++.++. .++.+.++++++|+..
T Consensus 243 ~~~~~~~~~~~~~------~~~~P-~li~~g~~D~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~H~~~---- 301 (318)
T 1l7a_A 243 KTLSYFDIMNLAD------RVKVP-VLMSIGLIDKVTPPSTVFAAYNHLE----------TKKELKVYRYFGHEYI---- 301 (318)
T ss_dssp HHHHTTCHHHHGG------GCCSC-EEEEEETTCSSSCHHHHHHHHHHCC----------SSEEEEEETTCCSSCC----
T ss_pred HhhccccHHHHHh------hCCCC-EEEEeccCCCCCCcccHHHHHhhcC----------CCeeEEEccCCCCCCc----
Confidence 2333444544444 46677 9999999999999988877666543 2478999999999932
Q ss_pred cchhhhhHHHHHHHHhCC
Q psy1288 704 KQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l~ 721 (1012)
.+....+.+||.++++
T Consensus 302 --~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 302 --PAFQTEKLAFFKQILK 317 (318)
T ss_dssp --HHHHHHHHHHHHHHHC
T ss_pred --chhHHHHHHHHHHHhC
Confidence 2345667789988754
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=163.00 Aligned_cols=253 Identities=14% Similarity=0.057 Sum_probs=156.4
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHHHhC-CeEEEEEcCCCCCCC
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFLRDF-NGIYAIPNIRGGGEY 476 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~ 476 (1012)
.....+.+.+.+.|| .|.+.++.|++. .++.|+||++|||..... ...|.. ....|+++ |+.|+.+|+||.++.
T Consensus 44 ~~~~~~~~~i~~~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~-~~~~la~~~g~~v~~~d~rg~~~~ 119 (310)
T 2hm7_A 44 PVAEVREFDMDLPGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDP-VCRVLAKDGRAVVFSVDYRLAPEH 119 (310)
T ss_dssp CCSEEEEEEEEETTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHH-HHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CcceEEEEEeccCCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHH-HHHHHHHhcCCEEEEeCCCCCCCC
Confidence 345678888998888 899999999763 356799999999753322 223433 34455544 999999999998764
Q ss_pred chhHHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCCcc
Q psy1288 477 GERWHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNPEI 549 (1012)
Q Consensus 477 g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~~i 549 (1012)
. .....+|+.++++|+.+.. .+++++++++|+|+||.+++.++.++|+ .++++++.+| .
T Consensus 120 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p---~ 185 (310)
T 2hm7_A 120 K-----------FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYP---S 185 (310)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESC---C
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcC---C
Confidence 2 1234678999999998874 2578899999999999999998887665 6888888887 2
Q ss_pred ccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccccccccccccc-CCCCChHHHHHHHc
Q psy1288 550 SDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDY-GSPANSSQFEYLLG 628 (1012)
Q Consensus 550 ~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~-g~p~~~~~~~~~~~ 628 (1012)
.++.... ....+. ... ....++.. .... + + ..+ +.+.... ...
T Consensus 186 ~~~~~~~----------~~~~~~---~~~-----~~~~~~~~---~~~~--~--------~-~~~~~~~~~~~----~~~ 229 (310)
T 2hm7_A 186 TGYDPAH----------PPASIE---ENA-----EGYLLTGG---MMLW--F--------R-DQYLNSLEELT----HPW 229 (310)
T ss_dssp CCCCTTS----------CCHHHH---HTS-----SSSSSCHH---HHHH--H--------H-HHHCSSGGGGG----CTT
T ss_pred cCCCccc----------CCcchh---hcC-----CCCCCCHH---HHHH--H--------H-HHhCCCCCccC----Ccc
Confidence 2210000 000000 000 00000000 0000 0 0 000 0000000 001
Q ss_pred CCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccc
Q psy1288 629 YSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQ 705 (1012)
Q Consensus 629 ~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~ 705 (1012)
.+|..... -...|++|++||..|..+ .++..+..+|..+ +.++.+.++++++|++.... ...
T Consensus 230 ~~p~~~~~------l~~~~P~lii~G~~D~~~--~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~ 294 (310)
T 2hm7_A 230 FSPVLYPD------LSGLPPAYIATAQYDPLR--DVGKLYAEALNKA-------GVKVEIENFEDLIHGFAQFYSLSPGA 294 (310)
T ss_dssp TCGGGCSC------CTTCCCEEEEEEEECTTH--HHHHHHHHHHHHT-------TCCEEEEEEEEEETTGGGGTTTCHHH
T ss_pred CCCCcCcc------ccCCCCEEEEEecCCCch--HHHHHHHHHHHHC-------CCCEEEEEeCCCccchhhhcccChHH
Confidence 23332211 123445999999999986 5788888999888 88999999999999875321 112
Q ss_pred hhhhhHHHHHHHHhC
Q psy1288 706 FPLTIPVIYFYLTSG 720 (1012)
Q Consensus 706 ~~~~~~~~~fl~~~l 720 (1012)
.+....+.+||.+++
T Consensus 295 ~~~~~~i~~fl~~~l 309 (310)
T 2hm7_A 295 TKALVRIAEKLRDAL 309 (310)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 345566778888764
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-14 Score=161.64 Aligned_cols=252 Identities=15% Similarity=0.105 Sum_probs=153.1
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCC--------------CCCCCcEEEEEcCCCCCCCCCC---cChhHHHHHH-hCC
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQ--------------LDGNNPCILYGYGGFAVSLQPG---FSVTKIVFLR-DFN 462 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~--------------~~~~~P~vv~~hGg~~~~~~~~---~~~~~~~~l~-~~G 462 (1012)
...+.+.+.+ +..+.+.++.|++.. ..++.|+||++|||........ |.. ....|+ ++|
T Consensus 70 v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~-~~~~la~~~g 146 (351)
T 2zsh_A 70 VFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDT-LCRRLVGLCK 146 (351)
T ss_dssp EEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHH-HHHHHHHHHT
T ss_pred ceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHH-HHHHHHHHcC
Confidence 4456666655 556888899998642 2467899999999754332222 333 234455 579
Q ss_pred eEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC----CCCCC-cEEEEecChHHHHHHHHHhhCCC--
Q psy1288 463 GIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG----YTQSS-RLAIQGGSNGGLLTAACINQRPD-- 535 (1012)
Q Consensus 463 ~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~----~~d~~-~i~i~G~S~GG~l~~~~~~~~p~-- 535 (1012)
++|+.+|+||.++.. ....++|+.++++|+.++. .++++ +++++|+|+||.+++.++.+.|+
T Consensus 147 ~~vv~~d~rg~~~~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~ 215 (351)
T 2zsh_A 147 CVVVSVNYRRAPENP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESG 215 (351)
T ss_dssp SEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTT
T ss_pred CEEEEecCCCCCCCC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccC
Confidence 999999999976532 2245789999999999864 47889 99999999999999999988887
Q ss_pred -ceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcc-cccCCCCcchhhhhhhhhhhccccccccccccc
Q psy1288 536 -LFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDR-KIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESD 613 (1012)
Q Consensus 536 -~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~ 613 (1012)
.++++|+.+| .. +....... ......++... ...+. .|...
T Consensus 216 ~~v~~~vl~~p---~~----------------------~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~ 258 (351)
T 2zsh_A 216 IDVLGNILLNP---MF----------------------GGNERTESEKSLDGKYFVTV--RDRDW----------YWKAF 258 (351)
T ss_dssp CCCCEEEEESC---CC----------------------CCSSCCHHHHHHTTTSSCCH--HHHHH----------HHHHH
T ss_pred CCeeEEEEECC---cc----------------------CCCcCChhhhhcCCCcccCH--HHHHH----------HHHHh
Confidence 8999999888 11 10000000 00000000000 00000 00000
Q ss_pred cCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCC
Q psy1288 614 YGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETK 693 (1012)
Q Consensus 614 ~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~ 693 (1012)
........ ....+|+.... ..+.++++|++|++||+.|..++ ++.++.++|+++ +..+++.++++
T Consensus 259 ~~~~~~~~----~~~~~~~~~~~--~~l~~i~~pP~Lii~G~~D~~~~--~~~~~~~~l~~~-------g~~~~~~~~~g 323 (351)
T 2zsh_A 259 LPEGEDRE----HPACNPFSPRG--KSLEGVSFPKSLVVVAGLDLIRD--WQLAYAEGLKKA-------GQEVKLMHLEK 323 (351)
T ss_dssp SCTTCCTT----STTTCTTSTTS--CCCTTCCCCEEEEEEETTSTTHH--HHHHHHHHHHHT-------TCCEEEEEETT
T ss_pred CCCCCCCC----CcccCCCCCCc--cchhhCCCCCEEEEEcCCCcchH--HHHHHHHHHHHc-------CCCEEEEEECC
Confidence 00000000 00112221100 01224567669999999998765 667788899887 78899999999
Q ss_pred CCCCCCCc--cccchhhhhHHHHHHHH
Q psy1288 694 AGHGGGKP--TTKQFPLTIPVIYFYLT 718 (1012)
Q Consensus 694 ~gHg~~~~--~~~~~~~~~~~~~fl~~ 718 (1012)
++|++... .....+....+.+||.+
T Consensus 324 ~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 324 ATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp CCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 99998641 11223445566677753
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=159.90 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=147.9
Q ss_pred EEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh--
Q psy1288 406 VFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG-- 483 (1012)
Q Consensus 406 v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~-- 483 (1012)
+.+.+.||.++.++++.|.+ ++.|+||++||..+... .|. .....|+++||.|+.+|+||.|..+......
T Consensus 6 ~~~~~~~g~~l~~~~~~p~~----~~~p~vv~~hG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~ 78 (236)
T 1zi8_A 6 ISIQSYDGHTFGALVGSPAK----APAPVIVIAQDIFGVNA--FMR-ETVSWLVDQGYAAVCPDLYARQAPGTALDPQDE 78 (236)
T ss_dssp CCEECTTSCEECEEEECCSS----CSEEEEEEECCTTBSCH--HHH-HHHHHHHHTTCEEEEECGGGGTSTTCBCCTTCH
T ss_pred EEEecCCCCeEEEEEECCCC----CCCCEEEEEcCCCCCCH--HHH-HHHHHHHhCCcEEEeccccccCCCcccccccch
Confidence 44678899999999998864 56899999999754332 222 3455667679999999999877553211000
Q ss_pred ---------hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcc
Q psy1288 484 ---------GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGR 554 (1012)
Q Consensus 484 ---------~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~ 554 (1012)
..........+|+.++++++.++...+ ++++++|+|+||.+++.++...| +++++...| ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~---~~---- 148 (236)
T 1zi8_A 79 RQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYG---VG---- 148 (236)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESC---SS----
T ss_pred hhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecC---cc----
Confidence 011111233578888888888765434 69999999999999999999887 778877766 00
Q ss_pred eeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccC
Q psy1288 555 WLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHN 634 (1012)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~ 634 (1012)
. . ++...
T Consensus 149 ----------------------------------------~----------------~-----------------~~~~~ 155 (236)
T 1zi8_A 149 ----------------------------------------L----------------E-----------------KQLNK 155 (236)
T ss_dssp ----------------------------------------G----------------G-----------------GCGGG
T ss_pred ----------------------------------------c----------------c-----------------cchhh
Confidence 0 0 00011
Q ss_pred CCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc------chhh
Q psy1288 635 IQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK------QFPL 708 (1012)
Q Consensus 635 ~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~------~~~~ 708 (1012)
+. +.+.| +|++||..|..+++..+..+.+.+... + .+.+.++++++|++...... ..+.
T Consensus 156 ~~------~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 220 (236)
T 1zi8_A 156 VP------EVKHP-ALFHMGGQDHFVPAPSRQLITEGFGAN-------P-LLQVHWYEEAGHSFARTGSSGYVASAAALA 220 (236)
T ss_dssp GG------GCCSC-EEEEEETTCTTSCHHHHHHHHHHHTTC-------T-TEEEEEETTCCTTTTCTTSTTCCHHHHHHH
T ss_pred hh------hcCCC-EEEEecCCCCCCCHHHHHHHHHHHHhC-------C-CceEEEECCCCcccccCCCCccCHHHHHHH
Confidence 11 35567 999999999999999998888887654 4 78999999999988653221 1234
Q ss_pred hhHHHHHHHHhCCC
Q psy1288 709 TIPVIYFYLTSGPV 722 (1012)
Q Consensus 709 ~~~~~~fl~~~l~~ 722 (1012)
...+.+||.++++.
T Consensus 221 ~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 221 NERTLDFLVPLQSR 234 (236)
T ss_dssp HHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHhcCC
Confidence 56778999988764
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=157.73 Aligned_cols=251 Identities=16% Similarity=0.055 Sum_probs=156.3
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC-CCCCcChhHHHHHHh-CCeEEEEEcCCCCCCC
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS-LQPGFSVTKIVFLRD-FNGIYAIPNIRGGGEY 476 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~ 476 (1012)
.....+.+.+.+.+| .|.+.++.|.+ .++.|+||++|||.... ....|... ...|++ .|+.|+.+|+||.++.
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~-~~~La~~~g~~Vv~~Dyrg~~~~ 135 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPL-CRAITNSCQCVTISVDYRLAPEN 135 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHH-HHHHHHHHTSEEEEECCCCTTTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHH-HHHHHHhcCCEEEEecCCCCCCC
Confidence 445678888998888 89999999976 45679999999975322 22334333 344543 4999999999998753
Q ss_pred chhHHhhhhcCCCcchHhHHHHHHHHHHHcCC-C-CCCcEEEEecChHHHHHHHHHhhCCCce---eEEEEccCCCcccc
Q psy1288 477 GERWHDGGRLLNKQNVFDDFQCAAEYLIASGY-T-QSSRLAIQGGSNGGLLTAACINQRPDLF---GAAIVQVGNPEISD 551 (1012)
Q Consensus 477 g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~-~-d~~~i~i~G~S~GG~l~~~~~~~~p~~f---~a~v~~~~~~~i~d 551 (1012)
. ....++|+.++++|+.+... . ++++++++|+|+||.+++.++.+.|+.. ++.+..+| +.+
T Consensus 136 ~-----------~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p---~~~ 201 (323)
T 3ain_A 136 K-----------FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYP---AVS 201 (323)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESC---CCS
T ss_pred C-----------CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEec---ccc
Confidence 2 12346799999999987632 1 7899999999999999999888777655 78888877 222
Q ss_pred CcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCc
Q psy1288 552 CGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSP 631 (1012)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP 631 (1012)
... ....+.... ....++.. .... .|....+.+.+.. ....+|
T Consensus 202 ~~~------------~~~~~~~~~--------~~~~l~~~---~~~~----------~~~~~~~~~~~~~----~~~~sp 244 (323)
T 3ain_A 202 FDL------------ITKSLYDNG--------EGFFLTRE---HIDW----------FGQQYLRSFADLL----DFRFSP 244 (323)
T ss_dssp CCS------------CCHHHHHHS--------SSSSSCHH---HHHH----------HHHHHCSSGGGGG----CTTTCG
T ss_pred CCC------------CCccHHHhc--------cCCCCCHH---HHHH----------HHHHhCCCCcccC----CcccCc
Confidence 100 000000000 00000100 0000 0000001000000 001234
Q ss_pred ccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccchhh
Q psy1288 632 LHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQFPL 708 (1012)
Q Consensus 632 ~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~~~~ 708 (1012)
... . -...|++|++||+.|+.+ .++..+..+|+.+ +.++.+.++++++|++.... ....+.
T Consensus 245 ~~~-~------l~~l~P~lii~G~~D~l~--~~~~~~a~~l~~a-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~ 308 (323)
T 3ain_A 245 ILA-D------LNDLPPALIITAEHDPLR--DQGEAYANKLLQS-------GVQVTSVGFNNVIHGFVSFFPFIEQGRDA 308 (323)
T ss_dssp GGS-C------CTTCCCEEEEEETTCTTH--HHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHHHH
T ss_pred ccC-c------ccCCCHHHEEECCCCccH--HHHHHHHHHHHHc-------CCCEEEEEECCCccccccccCcCHHHHHH
Confidence 332 1 123445999999999876 4778888999988 88999999999999986421 122345
Q ss_pred hhHHHHHHHHhCC
Q psy1288 709 TIPVIYFYLTSGP 721 (1012)
Q Consensus 709 ~~~~~~fl~~~l~ 721 (1012)
...+.+||.+++.
T Consensus 309 ~~~i~~fl~~~l~ 321 (323)
T 3ain_A 309 IGLIGYVLRKVFY 321 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5667788887653
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=168.91 Aligned_cols=251 Identities=17% Similarity=0.220 Sum_probs=160.0
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
..+..+.+.+.+.||.+|.++++.|++ .++.|+||++||+.+... .|... ..++ ++||.|+++|+||.|+...
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~~--~~~~~-~~~~-~~G~~v~~~D~rG~g~s~~ 150 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNSG--DWNDK-LNYV-AAGFTVVAMDVRGQGGQSQ 150 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCSC--CSGGG-HHHH-TTTCEEEEECCTTSSSSCC
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCCC--Chhhh-hHHH-hCCcEEEEEcCCCCCCCCC
Confidence 345678899999999999999999986 467899999999875543 33322 3444 4799999999999886543
Q ss_pred hHHhh------hhcCCC----------cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEE
Q psy1288 479 RWHDG------GRLLNK----------QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIV 542 (1012)
Q Consensus 479 ~~~~~------~~~~~~----------~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 542 (1012)
..... +....+ ...+.|+.++++++.....+++++|+++|+|+||.+++.++.+.|+ ++++++
T Consensus 151 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl 229 (346)
T 3fcy_A 151 DVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVS 229 (346)
T ss_dssp CCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEE
T ss_pred CCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEE
Confidence 32110 000000 1235899999999998888889999999999999999999999998 888888
Q ss_pred ccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHH
Q psy1288 543 QVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQ 622 (1012)
Q Consensus 543 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~ 622 (1012)
.+| .+.++.. ..... . ...+... +..+.... ... .......
T Consensus 230 ~~p--~~~~~~~----------------~~~~~-~------~~~~~~~----~~~~~~~~---------~~~-~~~~~~~ 270 (346)
T 3fcy_A 230 EYP--FLSDYKR----------------VWDLD-L------AKNAYQE----ITDYFRLF---------DPR-HERENEV 270 (346)
T ss_dssp ESC--SSCCHHH----------------HHHTT-C------CCGGGHH----HHHHHHHH---------CTT-CTTHHHH
T ss_pred CCC--cccCHHH----------------Hhhcc-c------cccchHH----HHHHHHhc---------CCC-cchHHHH
Confidence 877 1111000 00000 0 0000000 00100000 000 0011222
Q ss_pred HHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc
Q psy1288 623 FEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 623 ~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~ 702 (1012)
+..+..+++...+. +++.| +|++||..|..+++..+.+++.++ ..++.+.+++++||++..
T Consensus 271 ~~~~~~~d~~~~~~------~i~~P-~lii~G~~D~~~~~~~~~~~~~~~----------~~~~~~~~~~~~gH~~~~-- 331 (346)
T 3fcy_A 271 FTKLGYIDVKNLAK------RIKGD-VLMCVGLMDQVCPPSTVFAAYNNI----------QSKKDIKVYPDYGHEPMR-- 331 (346)
T ss_dssp HHHHGGGCHHHHGG------GCCSE-EEEEEETTCSSSCHHHHHHHHTTC----------CSSEEEEEETTCCSSCCT--
T ss_pred HHHhCcccHHHHHH------hcCCC-EEEEeeCCCCcCCHHHHHHHHHhc----------CCCcEEEEeCCCCCcCHH--
Confidence 33333334433333 56777 999999999999988776555443 236889999999999862
Q ss_pred ccchhhhhHHHHHHHHh
Q psy1288 703 TKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 703 ~~~~~~~~~~~~fl~~~ 719 (1012)
+....+.+||.+.
T Consensus 332 ----~~~~~i~~fl~~l 344 (346)
T 3fcy_A 332 ----GFGDLAMQFMLEL 344 (346)
T ss_dssp ----THHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHh
Confidence 3345567888753
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-15 Score=162.86 Aligned_cols=258 Identities=15% Similarity=0.095 Sum_probs=157.9
Q ss_pred CCceEEEEEECCCCc-eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHh-CCeEEEEEcCCCCCCC
Q psy1288 400 LFETKQVFYPSKDGT-KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRD-FNGIYAIPNIRGGGEY 476 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~-~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~ 476 (1012)
.+..+.+.+.+.||. .|++.++.|++. .++.|+||++|||...... ..|... ...+.+ .|+.|+.+|+||.++.
T Consensus 48 ~~~~~~~~i~~~~g~~~l~~~~~~P~~~--~~~~p~vv~~HGgg~~~g~~~~~~~~-~~~la~~~G~~Vv~~d~rg~~~~ 124 (323)
T 1lzl_A 48 GVSLRELSAPGLDGDPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPF-CVEVARELGFAVANVEYRLAPET 124 (323)
T ss_dssp TEEEEEEEECCSTTCCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHH-HHHHHHHHCCEEEEECCCCTTTS
T ss_pred CceEEEEEecCCCCCceeEEEEEecCCC--CCCCcEEEEECCCccccCChhhhHHH-HHHHHHhcCcEEEEecCCCCCCC
Confidence 456788889999997 899999999752 4567999999998632222 223333 334443 5999999999998764
Q ss_pred chhHHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCCcc
Q psy1288 477 GERWHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNPEI 549 (1012)
Q Consensus 477 g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~~i 549 (1012)
. .....+|+.++++|+.+.. .+++++++++|+|+||.+++.++.+.++ .+++.+..+| +
T Consensus 125 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p---~ 190 (323)
T 1lzl_A 125 T-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIP---E 190 (323)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESC---C
T ss_pred C-----------CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECC---c
Confidence 2 1234678899999988752 3577899999999999999988877655 4888888888 2
Q ss_pred ccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCCh-HHHHHHHc
Q psy1288 550 SDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANS-SQFEYLLG 628 (1012)
Q Consensus 550 ~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~-~~~~~~~~ 628 (1012)
.+... ....+..... ...++.. .... + |....+.+... ........
T Consensus 191 ~~~~~------------~~~~~~~~~~--------~~~~~~~---~~~~--~--------~~~~~~~~~~~~~~~~~~~~ 237 (323)
T 1lzl_A 191 LDDRL------------ETVSMTNFVD--------TPLWHRP---NAIL--S--------WKYYLGESYSGPEDPDVSIY 237 (323)
T ss_dssp CCTTC------------CSHHHHHCSS--------CSSCCHH---HHHH--H--------HHHHHCTTCCCTTCSCCCTT
T ss_pred cCCCc------------CchhHHHhcc--------CCCCCHH---HHHH--H--------HHHhCCCCcccccccCCCcc
Confidence 22100 0000000000 0000000 0000 0 00000000000 00000001
Q ss_pred CCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc--ccch
Q psy1288 629 YSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT--TKQF 706 (1012)
Q Consensus 629 ~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~--~~~~ 706 (1012)
.+|..... -...|++|++||+.|..+ .++..+..+|+++ +.++.+.++++++|++.... ....
T Consensus 238 ~sp~~~~~------~~~~~P~li~~G~~D~~~--~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~ 302 (323)
T 1lzl_A 238 AAPSRATD------LTGLPPTYLSTMELDPLR--DEGIEYALRLLQA-------GVSVELHSFPGTFHGSALVATAAVSE 302 (323)
T ss_dssp TCGGGCSC------CTTCCCEEEEEETTCTTH--HHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGSTTSHHHH
T ss_pred cCcccCcc------cCCCChhheEECCcCCch--HHHHHHHHHHHHc-------CCCEEEEEeCcCccCcccCccCHHHH
Confidence 23332211 123355999999999876 5778889999988 88999999999999975321 1123
Q ss_pred hhhhHHHHHHHHhCCC
Q psy1288 707 PLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 707 ~~~~~~~~fl~~~l~~ 722 (1012)
+....+.+||.+++..
T Consensus 303 ~~~~~i~~fl~~~l~~ 318 (323)
T 1lzl_A 303 RGAAEALTAIRRGLRS 318 (323)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5566788999998764
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=165.19 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=148.9
Q ss_pred eEEEEEEC-CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcCh--hHHHHHHhCCeEEEEEcCCCCCCC---
Q psy1288 403 TKQVFYPS-KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSV--TKIVFLRDFNGIYAIPNIRGGGEY--- 476 (1012)
Q Consensus 403 ~~~v~~~s-~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~d~RG~g~~--- 476 (1012)
.+++.+.| .+|..+.+.++.|++....++.|+|+++||+.+... .|.. ....++++.|++|+.+|.++.|..
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~ 92 (280)
T 3ls2_A 15 HKQYTHSAVSTHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTDE--NFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPN 92 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCCSH--HHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCC
T ss_pred EEEEEEechhcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCChh--hhhcchhHHHHHhhCCeEEEEeCCccccccccc
Confidence 45555665 478899999999998766788999999999865432 2211 134556667999999997643321
Q ss_pred --------chhHHhhhhcC--CCc-chHhHHHHH-HHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 477 --------GERWHDGGRLL--NKQ-NVFDDFQCA-AEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 477 --------g~~~~~~~~~~--~~~-~~~~D~~a~-~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
|..|+...... ... ...+.+... ..++.+. +..+++++++|+|+||++++.++.++|++|+++++.+
T Consensus 93 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s 171 (280)
T 3ls2_A 93 EDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQH-FPVTSTKAISGHSMGGHGALMIALKNPQDYVSASAFS 171 (280)
T ss_dssp CSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHH-SSEEEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEES
T ss_pred ccccccccCCccccccccccccccccHHHHHHHHHHHHHHhh-CCCCCCeEEEEECHHHHHHHHHHHhCchhheEEEEec
Confidence 12222111100 001 112222222 3333333 2235899999999999999999999999999999998
Q ss_pred CCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHH
Q psy1288 545 GNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFE 624 (1012)
Q Consensus 545 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~ 624 (1012)
| +.+ .... |.... .+.. .+|.. . .
T Consensus 172 ~---~~~----------------------~~~~---------~~~~~--~~~~---------------~~g~~--~---~ 195 (280)
T 3ls2_A 172 P---IVN----------------------PINC---------PWGVK--AFTG---------------YLGAD--K---T 195 (280)
T ss_dssp C---CSC----------------------GGGS---------HHHHH--HHHH---------------HHCSC--G---G
T ss_pred C---ccC----------------------cccC---------cchhh--HHHh---------------hcCch--H---H
Confidence 8 211 0000 00000 0000 01110 0 0
Q ss_pred HHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHH-HHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc
Q psy1288 625 YLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT 703 (1012)
Q Consensus 625 ~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~-s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~ 703 (1012)
.+...+|...+.... .....| +|++||..|..++... +.++.++|+++ +.++.+.++|+++|++..
T Consensus 196 ~~~~~~~~~~~~~~~--~~~~~p-~li~~G~~D~~v~~~~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~--- 262 (280)
T 3ls2_A 196 TWAQYDSCKLMAKAE--QSNYLP-MLVSQGDADNFLDEQLKPQNLVAVAKQK-------DYPLTLEMQTGYDHSYFF--- 262 (280)
T ss_dssp GTGGGCHHHHHHTCC--GGGCCC-EEEEEETTCTTCCCCCCHHHHHHHHHHH-------TCCEEEEEETTCCSSHHH---
T ss_pred HHHhcCHHHHHHhcc--ccCCCc-EEEEEeCCCcccCCchhHHHHHHHHHHh-------CCCceEEEeCCCCCchhh---
Confidence 011223332222000 001345 9999999999999854 88899999998 889999999999998632
Q ss_pred cchhhhhHHHHHHHHhCC
Q psy1288 704 KQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l~ 721 (1012)
....+.+.++|+.+.++
T Consensus 263 -~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 263 -ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp -HHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHhc
Confidence 22455677788887753
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-14 Score=164.57 Aligned_cols=239 Identities=13% Similarity=0.047 Sum_probs=153.2
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHh
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFD 494 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 494 (1012)
.|.+.++.|++ .++.|+||++||+.+.. +. .....|+++||.|+.+|+||.++.... ......+
T Consensus 144 ~l~~~l~~P~~---~~~~P~Vv~~hG~~~~~----~~-~~a~~La~~Gy~V~a~D~rG~g~~~~~--------~~~~~~~ 207 (422)
T 3k2i_A 144 RVRATLFLPPG---PGPFPGIIDIFGIGGGL----LE-YRASLLAGHGFATLALAYYNFEDLPNN--------MDNISLE 207 (422)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCTTCSC----CC-HHHHHHHTTTCEEEEEECSSSTTSCSS--------CSCEETH
T ss_pred cEEEEEEcCCC---CCCcCEEEEEcCCCcch----hH-HHHHHHHhCCCEEEEEccCCCCCCCCC--------cccCCHH
Confidence 68899999976 46789999999985431 22 235677778999999999997654322 1223478
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccC--cceeeeecccccccCccccc
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC--GRWLIVHTMKDCKNNMFHFC 572 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~--~~~~~~~~~~~~~~~~~~~~ 572 (1012)
|+.++++++.+...+++++|+++|+|+||.+++.++.++|+ ++++|+..+ .... ..|. +.
T Consensus 208 d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~---~~~~~~~~~~--------------~~ 269 (422)
T 3k2i_A 208 YFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSING---SGISGNTAIN--------------YK 269 (422)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESC---CSBCCSSCEE--------------ET
T ss_pred HHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcC---cccccCCchh--------------hc
Confidence 99999999999888889999999999999999999999998 788888776 1110 0000 00
Q ss_pred ccCCCCcccccCCCCcchhhhhhhhhhhccccccc-cccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEE
Q psy1288 573 DLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIG-YFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLL 651 (1012)
Q Consensus 573 dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g-~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLi 651 (1012)
. ..+ +.++... ........+ ..+...+..+.... ..+....+ .+++.| +|+
T Consensus 270 ~-~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------~~i~~P-~Li 321 (422)
T 3k2i_A 270 H-SSI------PPLGYDL--------RRIKVAFSGLVDIVDIRNALVGGY------KNPSMIPI------EKAQGP-ILL 321 (422)
T ss_dssp T-EEE------CCCCBCG--------GGCEECTTSCEECTTCBCCCTTGG------GSTTBCCG------GGCCSC-EEE
T ss_pred C-CcC------CCcccch--------hhcccCcchhHHHHHHHhhhhhcc------cccccccH------HHCCCC-EEE
Confidence 0 000 0000000 000000000 00111122221110 01111122 256778 999
Q ss_pred EeeCCCCCCChHHH-HHHHHHHHhhhccCCCCCCc-EEEEEeCCCCCCCCCcc--------------------------c
Q psy1288 652 MTADHDDRVSPVHS-LKFAATLQEKLRDYPHQTNP-LLIRIETKAGHGGGKPT--------------------------T 703 (1012)
Q Consensus 652 ihG~~D~~v~~~~s-~~~~~~L~~~~~~~~~~~~~-~~l~~~p~~gHg~~~~~--------------------------~ 703 (1012)
+||..|..++.... ..+..+|+++ +.+ +.+++++++||++..+. .
T Consensus 322 i~G~~D~~vp~~~~~~~~~~~l~~~-------g~~~~~l~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~ 394 (422)
T 3k2i_A 322 IVGQDDHNWRSELYAQTVSERLQAH-------GKEKPQIICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSK 394 (422)
T ss_dssp EEETTCSSSCHHHHHHHHHHHHHHT-------TCCCCEEEEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-------CCCCCEEEEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHH
Confidence 99999999998866 5777888887 777 89999999999973220 1
Q ss_pred cchhhhhHHHHHHHHhCCC
Q psy1288 704 KQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l~~ 722 (1012)
...+.+..+++||.++++.
T Consensus 395 ~~~~~~~~i~~Fl~~~L~~ 413 (422)
T 3k2i_A 395 AQEDAWKQILAFFCKHLGG 413 (422)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 1245677888999999875
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=150.02 Aligned_cols=215 Identities=15% Similarity=0.116 Sum_probs=147.2
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
.+..+.+.+.+ ||.+|.++++.|++ +.|+||++||..+......+ ......++++||.|+.+|+||.+.....
T Consensus 9 ~~~~~~~~~~~-~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~-~~~~~~l~~~G~~v~~~d~~g~g~s~~~ 81 (223)
T 2o2g_A 9 QPQEYAVSVSV-GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRN-RYVAEVLQQAGLATLLIDLLTQEEEEID 81 (223)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHH-HHHHHHHHHHTCEEEEECSSCHHHHHHH
T ss_pred CceeeEEEEec-CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccch-HHHHHHHHHCCCEEEEEcCCCcCCCCcc
Confidence 35567787876 89999999998864 57999999997654432222 2345566667999999999985532111
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeee
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~ 559 (1012)
..............+|+.++++++......++++++++|+|+||.+++.++.++|+.+++++...+ ..
T Consensus 82 ~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~---~~--------- 149 (223)
T 2o2g_A 82 LRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGG---RP--------- 149 (223)
T ss_dssp HHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC---CG---------
T ss_pred chhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCC---CC---------
Confidence 111000011122356888889999888888899999999999999999999999999999998887 00
Q ss_pred cccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCC
Q psy1288 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPD 639 (1012)
Q Consensus 560 ~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~ 639 (1012)
+. .. ..+.
T Consensus 150 -------------------------------------~~------------~~--------------------~~~~--- 157 (223)
T 2o2g_A 150 -------------------------------------DL------------AP--------------------SALP--- 157 (223)
T ss_dssp -------------------------------------GG------------CT--------------------TTGG---
T ss_pred -------------------------------------Cc------------CH--------------------HHHh---
Confidence 00 00 0111
Q ss_pred cccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 640 ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 640 ~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
..+.| +|++||..|..++.. ....+... +..+.+..+++++|.+..... ..+....+.+|+.++
T Consensus 158 ---~~~~P-~l~i~g~~D~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~ 221 (223)
T 2o2g_A 158 ---HVKAP-TLLIVGGYDLPVIAM----NEDALEQL-------QTSKRLVIIPRASHLFEEPGA-LTAVAQLASEWFMHY 221 (223)
T ss_dssp ---GCCSC-EEEEEETTCHHHHHH----HHHHHHHC-------CSSEEEEEETTCCTTCCSTTH-HHHHHHHHHHHHHHH
T ss_pred ---cCCCC-EEEEEccccCCCCHH----HHHHHHhh-------CCCeEEEEeCCCCcccCChHH-HHHHHHHHHHHHHHh
Confidence 34567 999999999887522 23344444 567889999999999754321 124456677899887
Q ss_pred CC
Q psy1288 720 GP 721 (1012)
Q Consensus 720 l~ 721 (1012)
++
T Consensus 222 l~ 223 (223)
T 2o2g_A 222 LR 223 (223)
T ss_dssp CC
T ss_pred cC
Confidence 63
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=158.32 Aligned_cols=253 Identities=17% Similarity=0.114 Sum_probs=153.8
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHhC-CeEEEEEcCCCCCCCc
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRDF-NGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~g 477 (1012)
....+.+.+.+.|| .|++.++.|.+ ..+.|+||++|||...... ..|.. ....++++ |+.|+.+|+||.++..
T Consensus 45 ~~~~~~~~i~~~~g-~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~v~~~d~rg~g~~~ 119 (311)
T 2c7b_A 45 IAETRDVHIPVSGG-SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDH-ICRRLSRLSDSVVVSVDYRLAPEYK 119 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHH-HHHHHHHHHTCEEEEECCCCTTTSC
T ss_pred cceEEEEEecCCCC-cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHH-HHHHHHHhcCCEEEEecCCCCCCCC
Confidence 34678888998888 89999999875 2457999999998522222 22333 34455544 9999999999987642
Q ss_pred hhHHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCCccc
Q psy1288 478 ERWHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNPEIS 550 (1012)
Q Consensus 478 ~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~~i~ 550 (1012)
.....+|+.++++|+.+.. .+++++++++|+|+||.+++.++.+.|+ .++++++.+| ..
T Consensus 120 -----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p---~~ 185 (311)
T 2c7b_A 120 -----------FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYP---VV 185 (311)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESC---CC
T ss_pred -----------CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECC---cc
Confidence 1234578888999988763 3577899999999999999998877665 4888898888 22
Q ss_pred cCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCC
Q psy1288 551 DCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYS 630 (1012)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~s 630 (1012)
++..... .....+ ... ...+++.. ...+. +....+.+.... ....+
T Consensus 186 ~~~~~~~--------~~~~~~---~~~------~~~~~~~~---~~~~~----------~~~~~~~~~~~~----~~~~~ 231 (311)
T 2c7b_A 186 NMTGVPT--------ASLVEF---GVA------ETTSLPIE---LMVWF----------GRQYLKRPEEAY----DFKAS 231 (311)
T ss_dssp CCSSCCC--------HHHHHH---HHC------TTCSSCHH---HHHHH----------HHHHCSSTTGGG----STTTC
T ss_pred CCccccc--------cCCccH---HHh------ccCCCCHH---HHHHH----------HHHhCCCCcccc----CcccC
Confidence 2100000 000000 000 00001000 00000 000001110000 01123
Q ss_pred cccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccchh
Q psy1288 631 PLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQFP 707 (1012)
Q Consensus 631 P~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~~~ 707 (1012)
|....- ...|++|++||+.|+.++ .+..+..+++.+ +.++.++++++++|++.... ....+
T Consensus 232 p~~~~l-------~~~~P~lii~G~~D~~~~--~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~ 295 (311)
T 2c7b_A 232 PLLADL-------GGLPPALVVTAEYDPLRD--EGELYAYKMKAS-------GSRAVAVRFAGMVHGFVSFYPFVDAGRE 295 (311)
T ss_dssp GGGSCC-------TTCCCEEEEEETTCTTHH--HHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHHH
T ss_pred cccccc-------cCCCcceEEEcCCCCchH--HHHHHHHHHHHC-------CCCEEEEEeCCCccccccccccCHHHHH
Confidence 332211 223459999999999875 566677888887 88999999999999986321 12234
Q ss_pred hhhHHHHHHHHhCC
Q psy1288 708 LTIPVIYFYLTSGP 721 (1012)
Q Consensus 708 ~~~~~~~fl~~~l~ 721 (1012)
....+.+||.+++.
T Consensus 296 ~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 296 ALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 56677789988764
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=166.15 Aligned_cols=244 Identities=17% Similarity=0.154 Sum_probs=146.2
Q ss_pred EEEEEEC-CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcCh--hHHHHHHhCCeEEEEEcC--CCCCCCch
Q psy1288 404 KQVFYPS-KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSV--TKIVFLRDFNGIYAIPNI--RGGGEYGE 478 (1012)
Q Consensus 404 ~~v~~~s-~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~d~--RG~g~~g~ 478 (1012)
+.+.+.+ .+|..+.+.++.|++.. .++.|+||++||+.+... .|.. ....+++++|++|+.+|. ||.+..|.
T Consensus 17 ~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~ 93 (282)
T 3fcx_A 17 KVFEHDSVELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCTEQ--NFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGE 93 (282)
T ss_dssp EEEEEEETTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCSH--HHHHHSCCHHHHHHHTCEEEEECSCSSCCCC---
T ss_pred EEEEEEchhcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCcc--chhhcchHHHHhhcCCeEEEEeccccCccccccc
Confidence 3444444 57889999999998753 367899999999865432 1211 123566677999999999 88776543
Q ss_pred h--H--------HhhhhcCC---CcchHhHHH-HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 479 R--W--------HDGGRLLN---KQNVFDDFQ-CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 479 ~--~--------~~~~~~~~---~~~~~~D~~-a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
. | +....... ......++. ....++.+.-.+++++++++|+|+||++++.++.++|++|+++++.+
T Consensus 94 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s 173 (282)
T 3fcx_A 94 DESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFA 173 (282)
T ss_dssp -----CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEES
T ss_pred cccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeC
Confidence 2 1 11000000 001122233 23334433444788999999999999999999999999999999998
Q ss_pred CCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHH
Q psy1288 545 GNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFE 624 (1012)
Q Consensus 545 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~ 624 (1012)
| +.+ +... +. .... +. ..++... .
T Consensus 174 ~---~~~----------------------~~~~---------~~------~~~~--~~---------~~~~~~~-----~ 197 (282)
T 3fcx_A 174 P---ICN----------------------PVLC---------PW------GKKA--FS---------GYLGTDQ-----S 197 (282)
T ss_dssp C---CCC----------------------GGGS---------HH------HHHH--HH---------HHHC--------C
T ss_pred C---ccC----------------------cccC---------ch------hHHH--HH---------HhcCCch-----h
Confidence 8 211 1000 00 0000 00 0011110 0
Q ss_pred HHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHH--HHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc
Q psy1288 625 YLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVH--SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 625 ~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~--s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~ 702 (1012)
.+..++|...+.. +.+.+.| +|++||..|..++..+ +.++.++|+++ +.++.+.++++++|++..
T Consensus 198 ~~~~~~~~~~~~~---~~~~~~p-~li~~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~-- 264 (282)
T 3fcx_A 198 KWKAYDATHLVKS---YPGSQLD-ILIDQGKDDQFLLDGQLLPDNFIAACTEK-------KIPVVFRLQEDYDHSYYF-- 264 (282)
T ss_dssp CGGGGCHHHHHTT---CC---CC-EEEEEETTCHHHHTTSSCHHHHHHHHHHT-------TCCEEEEEETTCCSSHHH--
T ss_pred hhhhcCHHHHHHh---cccCCCc-EEEEcCCCCcccccchhhHHHHHHHHHHc-------CCceEEEECCCCCcCHHH--
Confidence 0112233222220 0123556 9999999999886655 55888999988 889999999999998732
Q ss_pred ccchhhhhHHHHHHHHhCC
Q psy1288 703 TKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 703 ~~~~~~~~~~~~fl~~~l~ 721 (1012)
....+.+.+.|+.+.+.
T Consensus 265 --~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 265 --IATFITDHIRHHAKYLN 281 (282)
T ss_dssp --HHHHHHHHHHHHHHHTT
T ss_pred --HHhhhHHHHHHHHHhhc
Confidence 22445667788887764
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-14 Score=165.19 Aligned_cols=239 Identities=14% Similarity=0.087 Sum_probs=152.3
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHh
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFD 494 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 494 (1012)
.|.++++.|++ .++.|+||++||+.+... . .....|+++||.|+.+|+||.++.... ......+
T Consensus 160 ~l~~~l~~P~~---~~~~P~Vv~lhG~~~~~~----~-~~a~~La~~Gy~Vla~D~rG~~~~~~~--------~~~~~~~ 223 (446)
T 3hlk_A 160 RVRGTLFLPPE---PGPFPGIVDMFGTGGGLL----E-YRASLLAGKGFAVMALAYYNYEDLPKT--------METLHLE 223 (446)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCSSCSCC----C-HHHHHHHTTTCEEEEECCSSSTTSCSC--------CSEEEHH
T ss_pred eEEEEEEeCCC---CCCCCEEEEECCCCcchh----h-HHHHHHHhCCCEEEEeccCCCCCCCcc--------hhhCCHH
Confidence 68899999976 467899999999865321 2 235677778999999999997654322 1123478
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccC--cceeeeecccccccCccccc
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC--GRWLIVHTMKDCKNNMFHFC 572 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~--~~~~~~~~~~~~~~~~~~~~ 572 (1012)
|+.++++++.++..+++++|+++|+|+||.+++.++.++|+ ++++|+..+ .... ..|. +.
T Consensus 224 d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~---~~~~~~~~~~--------------~~ 285 (446)
T 3hlk_A 224 YFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVING---SVANVGGTLR--------------YK 285 (446)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESC---CSBCCSSEEE--------------ET
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcC---cccccCCCcc--------------cc
Confidence 99999999999988899999999999999999999999988 788888776 1110 0000 00
Q ss_pred ccCCCCcccccCCCCcchhhhhhhhhhhccccccc-cccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEE
Q psy1288 573 DLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIG-YFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLL 651 (1012)
Q Consensus 573 dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g-~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLi 651 (1012)
. ..+ +.++... ........+ ..+...+..+..... ......+ .+++.| +|+
T Consensus 286 ~-~~~------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~i~~P-vLi 337 (446)
T 3hlk_A 286 G-ETL------PPVGVNR--------NRIKVTKDGYADIVDVLNSPLEGPD------QKSFIPV------ERAEST-FLF 337 (446)
T ss_dssp T-EEE------CCCCBCG--------GGCEECSSSCEECTTCBCCTTSGGG------GGGBCCG------GGCCSE-EEE
T ss_pred C-ccC------Cccccch--------hccccccchHHHHHHHHhchhhccc------cccccCH------HHCCCC-EEE
Confidence 0 000 0000000 000000000 011111222211110 0011112 246677 999
Q ss_pred EeeCCCCCCChHHH-HHHHHHHHhhhccCCCCCCc-EEEEEeCCCCCCCCCcc--------------------------c
Q psy1288 652 MTADHDDRVSPVHS-LKFAATLQEKLRDYPHQTNP-LLIRIETKAGHGGGKPT--------------------------T 703 (1012)
Q Consensus 652 ihG~~D~~v~~~~s-~~~~~~L~~~~~~~~~~~~~-~~l~~~p~~gHg~~~~~--------------------------~ 703 (1012)
+||..|..++.... ..+.+.|+++ +.+ +.++++|++||++..+. .
T Consensus 338 i~G~~D~~vp~~~~~~~~~~~l~~~-------g~~~~~l~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~ 410 (446)
T 3hlk_A 338 LVGQDDHNWKSEFYANEACKRLQAH-------GRRKPQIICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAM 410 (446)
T ss_dssp EEETTCCSSCHHHHHHHHHHHHHHT-------TCCCCEEEEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHH
T ss_pred EEeCCCCCcChHHHHHHHHHHHHHc-------CCCCcEEEEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHH
Confidence 99999999999655 6788888888 777 89999999999983111 0
Q ss_pred cchhhhhHHHHHHHHhCCC
Q psy1288 704 KQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l~~ 722 (1012)
...+.+..+++||.++++.
T Consensus 411 a~~~~~~~i~~Fl~~~L~~ 429 (446)
T 3hlk_A 411 AQVDAWKQLQTFFHKHLGG 429 (446)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 1234677888999999865
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=163.03 Aligned_cols=244 Identities=15% Similarity=0.103 Sum_probs=149.8
Q ss_pred eEEEEEEC-CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChh--HHHHHHhCCeEEEEEcCCCCCCC---
Q psy1288 403 TKQVFYPS-KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT--KIVFLRDFNGIYAIPNIRGGGEY--- 476 (1012)
Q Consensus 403 ~~~v~~~s-~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~l~~~G~~v~~~d~RG~g~~--- 476 (1012)
.+.+.+.+ .+|..+.+.++.|++....++.|+||++||+.+... .|... ...++++.|++|+.+|.++.|.-
T Consensus 17 ~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~ 94 (280)
T 3i6y_A 17 HKQYSHVSNTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSDE--NFMQKAGAQRLAAELGIAIVAPDTSPRGEGVAD 94 (280)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCSS--HHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCC
T ss_pred EEEEEEeccccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCChh--HHhhcccHHHHHhhCCeEEEEeCCcccccccCc
Confidence 45555655 578999999999998766788999999999865432 22211 34566667999999998754421
Q ss_pred --------chhHHhhhhcC---CCcchHhHHH-HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 477 --------GERWHDGGRLL---NKQNVFDDFQ-CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 477 --------g~~~~~~~~~~---~~~~~~~D~~-a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
|..++...... ......+.+. ..+.++.+.-.+ +++++++|+|+||++++.++.++|++|+++++.+
T Consensus 95 ~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s 173 (280)
T 3i6y_A 95 DEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFS 173 (280)
T ss_dssp CSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEES
T ss_pred ccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeC
Confidence 11111111000 0001122222 233444343333 6899999999999999999999999999999998
Q ss_pred CCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHH
Q psy1288 545 GNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFE 624 (1012)
Q Consensus 545 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~ 624 (1012)
| +.+ +... +... .. + ...++.. . .
T Consensus 174 ~---~~~----------------------~~~~---------~~~~------~~--~---------~~~~~~~--~---~ 197 (280)
T 3i6y_A 174 P---INN----------------------PVNC---------PWGQ------KA--F---------TAYLGKD--T---D 197 (280)
T ss_dssp C---CCC----------------------GGGS---------HHHH------HH--H---------HHHHCSC--G---G
T ss_pred C---ccc----------------------cccC---------chHH------HH--H---------HHhcCCc--h---H
Confidence 8 211 1000 0000 00 0 0001110 0 0
Q ss_pred HHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHH-HHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc
Q psy1288 625 YLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT 703 (1012)
Q Consensus 625 ~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~-s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~ 703 (1012)
.+...+|...+... ....| +|++||..|+.++... +.++.++|+++ +.++.+.++|+++|++..
T Consensus 198 ~~~~~~~~~~~~~~----~~~~P-~li~~G~~D~~v~~~~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~--- 262 (280)
T 3i6y_A 198 TWREYDASLLMRAA----KQYVP-ALVDQGEADNFLAEQLKPEVLEAAASSN-------NYPLELRSHEGYDHSYYF--- 262 (280)
T ss_dssp GTGGGCHHHHHHHC----SSCCC-EEEEEETTCTTHHHHTCHHHHHHHHHHT-------TCCEEEEEETTCCSSHHH---
T ss_pred HHHhcCHHHHHHhc----CCCcc-EEEEEeCCCccccchhhHHHHHHHHHHc-------CCCceEEEeCCCCccHHH---
Confidence 11223333322200 01245 9999999999998755 78889999988 889999999999998632
Q ss_pred cchhhhhHHHHHHHHhCC
Q psy1288 704 KQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 704 ~~~~~~~~~~~fl~~~l~ 721 (1012)
....+.+.++|+.+.+.
T Consensus 263 -~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 263 -IASFIEDHLRFHSNYLN 279 (280)
T ss_dssp -HHHHHHHHHHHHHHHHT
T ss_pred -HHHhHHHHHHHHHhhcc
Confidence 22455677788887753
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.6e-14 Score=155.94 Aligned_cols=242 Identities=16% Similarity=0.063 Sum_probs=146.0
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHH-hCCeEEEEEcCCCCCCCc
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLR-DFNGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g 477 (1012)
....+.+.+ +|..+ +.|.+. ....|+||++|||....... .|.. ....|+ +.|+.|+.+|+|+.++..
T Consensus 57 ~~~~~~~~~---~g~~~----~~p~~~--~~~~~~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~v~~~dyr~~~~~~ 126 (322)
T 3k6k_A 57 GVELTLTDL---GGVPC----IRQATD--GAGAAHILYFHGGGYISGSPSTHLV-LTTQLAKQSSATLWSLDYRLAPENP 126 (322)
T ss_dssp TCEEEEEEE---TTEEE----EEEECT--TCCSCEEEEECCSTTTSCCHHHHHH-HHHHHHHHHTCEEEEECCCCTTTSC
T ss_pred CceEEEEEE---CCEeE----EecCCC--CCCCeEEEEEcCCcccCCChHHHHH-HHHHHHHhcCCEEEEeeCCCCCCCC
Confidence 344444444 56555 456552 22334499999985322221 2222 233444 349999999999876532
Q ss_pred hhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc----eeEEEEccCCCccccCc
Q psy1288 478 ERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL----FGAAIVQVGNPEISDCG 553 (1012)
Q Consensus 478 ~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~~i~d~~ 553 (1012)
....++|+.++++|+.++ .+++++|+++|+|+||.+++.++.+.++. ++++++.+| +.++.
T Consensus 127 -----------~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p---~~~~~ 191 (322)
T 3k6k_A 127 -----------FPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSP---FVDLT 191 (322)
T ss_dssp -----------TTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESC---CCCTT
T ss_pred -----------CchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecC---CcCcc
Confidence 234568999999999987 46889999999999999999888776654 889999988 22211
Q ss_pred ceeeeecccccccCcccccccCCCCcccc---cCCCCcchhhhhhhhhhhcccccccccccccc-CCCCChHHHHHHHcC
Q psy1288 554 RWLIVHTMKDCKNNMFHFCDLDTIPDRKI---EGKLPLTQVVHKVLDMLKFNKFTIGYFWESDY-GSPANSSQFEYLLGY 629 (1012)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~dl~~~~~~~~---~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~-g~p~~~~~~~~~~~~ 629 (1012)
....... .....++.. .... +. ..| +.. ... ....
T Consensus 192 ----------------------~~~~~~~~~~~~~~~~~~~---~~~~--~~---------~~~~~~~-~~~----~~~~ 230 (322)
T 3k6k_A 192 ----------------------LSRWSNSNLADRDFLAEPD---TLGE--MS---------ELYVGGE-DRK----NPLI 230 (322)
T ss_dssp ----------------------CCSHHHHHTGGGCSSSCHH---HHHH--HH---------HHHHTTS-CTT----CTTT
T ss_pred ----------------------cCccchhhccCCCCcCCHH---HHHH--HH---------HHhcCCC-CCC----CCcC
Confidence 0000000 000000000 0000 00 000 000 000 0112
Q ss_pred CcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccch
Q psy1288 630 SPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQF 706 (1012)
Q Consensus 630 sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~~ 706 (1012)
+|..... ...|++|++||+.|.. ..++..+.++|+++ +.+++++++++++|++.... ....
T Consensus 231 sp~~~~~-------~~~pP~li~~G~~D~~--~~~~~~~~~~l~~~-------g~~~~l~~~~g~~H~~~~~~~~~~~~~ 294 (322)
T 3k6k_A 231 SPVYADL-------SGLPEMLIHVGSEEAL--LSDSTTLAERAGAA-------GVSVELKIWPDMPHVFQMYGKFVNAAD 294 (322)
T ss_dssp CGGGSCC-------TTCCCEEEEEESSCTT--HHHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGGTTTCHHHH
T ss_pred Ccccccc-------cCCCcEEEEECCcCcc--HHHHHHHHHHHHHC-------CCCEEEEEECCCccccccccccChHHH
Confidence 4443322 3456699999999976 46888899999998 88999999999999985422 1224
Q ss_pred hhhhHHHHHHHHhCCCC
Q psy1288 707 PLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 707 ~~~~~~~~fl~~~l~~~ 723 (1012)
+.+.++.+||.++++..
T Consensus 295 ~~~~~i~~fl~~~l~~~ 311 (322)
T 3k6k_A 295 ISIKEICHWISARISKL 311 (322)
T ss_dssp HHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56677889999988653
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=146.88 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=133.0
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCC--CCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAV--SLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~--~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
.+.+.+.+.|| +|.++++.|.+ .++.|+||++||+... .....+.......+.++|+.|+.+|+||.|.....+
T Consensus 6 ~~~~~~~~~~g-~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~ 81 (208)
T 3trd_A 6 NEDFLIQGPVG-QLEVMITRPKG---IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRY 81 (208)
T ss_dssp SSCEEEECSSS-EEEEEEECCSS---CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSCC
T ss_pred cceEEEECCCc-eEEEEEEcCCC---CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCCc
Confidence 45677889999 99999998865 3478999999995311 111111123455677789999999999987543221
Q ss_pred HhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeec
Q psy1288 481 HDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHT 560 (1012)
Q Consensus 481 ~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~ 560 (1012)
.......+|+.++++++.++ .+.++++++|+|+||.+++.++ .+| .+++++...+
T Consensus 82 ------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~--------------- 136 (208)
T 3trd_A 82 ------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAP--------------- 136 (208)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESC---------------
T ss_pred ------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecc---------------
Confidence 22234578999999999887 3458999999999999999998 556 7888888877
Q ss_pred ccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCc
Q psy1288 561 MKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDE 640 (1012)
Q Consensus 561 ~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~ 640 (1012)
. .+ .| ++..+.
T Consensus 137 ----------~------------------------~~-----------~~--------------------~~~~~~---- 147 (208)
T 3trd_A 137 ----------P------------------------VF-----------YE--------------------GFASLT---- 147 (208)
T ss_dssp ----------C------------------------TT-----------SG--------------------GGTTCC----
T ss_pred ----------c------------------------cc-----------cC--------------------Cchhhh----
Confidence 0 00 00 001111
Q ss_pred ccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 641 LKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 641 ~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
..+.| +|++||..|..+++..+.++..++. ..+.+.++++++|.+..
T Consensus 148 --~~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~H~~~~ 194 (208)
T 3trd_A 148 --QMASP-WLIVQGDQDEVVPFEQVKAFVNQIS----------SPVEFVVMSGASHFFHG 194 (208)
T ss_dssp --SCCSC-EEEEEETTCSSSCHHHHHHHHHHSS----------SCCEEEEETTCCSSCTT
T ss_pred --hcCCC-EEEEECCCCCCCCHHHHHHHHHHcc----------CceEEEEeCCCCCcccc
Confidence 24566 9999999999999988776655533 23688899999999865
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.6e-15 Score=159.40 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=148.8
Q ss_pred eEEEEEEC-CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcCh--hHHHHHHhCCeEEEEEcCCCCCCCch-
Q psy1288 403 TKQVFYPS-KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSV--TKIVFLRDFNGIYAIPNIRGGGEYGE- 478 (1012)
Q Consensus 403 ~~~v~~~s-~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~d~RG~g~~g~- 478 (1012)
.+.+.+.+ .+|..+.+.++.|++.. .++.|+||++||+.+... .|.. ....++.+.|++|+.+|.||.|....
T Consensus 15 ~~~~~~~s~~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~ 91 (278)
T 3e4d_A 15 QGVFSHQSETLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTHA--NVMEKGEYRRMASELGLVVVCPDTSPRGNDVPD 91 (278)
T ss_dssp EEEEEEEETTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCSH--HHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCC
T ss_pred EEEEEEeccccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCCcc--chhhcccHHHHHhhCCeEEEecCCcccCccccc
Confidence 34455544 47889999999998754 567899999999865432 2221 13445666699999999998764321
Q ss_pred ---hH--------HhhhhcC--CCcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEc
Q psy1288 479 ---RW--------HDGGRLL--NKQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQ 543 (1012)
Q Consensus 479 ---~~--------~~~~~~~--~~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 543 (1012)
.| +...... .....+.+.. ..+.++.+.-.+++++++++|+|+||++++.++.++|++|+++++.
T Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 171 (278)
T 3e4d_A 92 ELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAF 171 (278)
T ss_dssp CTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEE
T ss_pred ccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEe
Confidence 11 1110000 0011122222 2445555554577799999999999999999999999999999999
Q ss_pred cCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHH
Q psy1288 544 VGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQF 623 (1012)
Q Consensus 544 ~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~ 623 (1012)
+| +.+ +...+ .... .+.. .+|... .
T Consensus 172 ~~---~~~----------------------~~~~~---------~~~~--~~~~---------------~~~~~~--~-- 196 (278)
T 3e4d_A 172 AP---IVA----------------------PSSAD---------WSEP--ALEK---------------YLGADR--A-- 196 (278)
T ss_dssp SC---CSC----------------------GGGCT---------TTHH--HHHH---------------HHCSCG--G--
T ss_pred CC---ccc----------------------ccCCc---------cchh--hHHH---------------hcCCcH--H--
Confidence 88 211 11100 0000 0000 011100 0
Q ss_pred HHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHH-HHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc
Q psy1288 624 EYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 624 ~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~-s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~ 702 (1012)
.+..++|...+.. -...|++|++||..|+.++... +..+.+.|+++ +.++.+.++++++|++.-
T Consensus 197 -~~~~~~~~~~~~~-----~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~-- 261 (278)
T 3e4d_A 197 -AWRRYDACSLVED-----GARFPEFLIDQGKADSFLEKGLRPWLFEEAIKGT-------DIGLTLRMHDRYDHSYYF-- 261 (278)
T ss_dssp -GGGGGCHHHHHHT-----TCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTTS-------SCEEEEEEETTCCSSHHH--
T ss_pred -HHHhcChhhHhhc-----CCCCCcEEEEecCCCcccccchhHHHHHHHHHHc-------CCCceEEEeCCCCcCHHH--
Confidence 0112233322221 1123349999999999988532 67888888887 889999999999998632
Q ss_pred ccchhhhhHHHHHHHHhC
Q psy1288 703 TKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 703 ~~~~~~~~~~~~fl~~~l 720 (1012)
....+.+.+.|+.+.+
T Consensus 262 --~~~~~~~~l~~~~~~l 277 (278)
T 3e4d_A 262 --ISTFMDDHLKWHAERL 277 (278)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhc
Confidence 1244566778887764
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=158.90 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=136.6
Q ss_pred CceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcch
Q psy1288 413 GTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492 (1012)
Q Consensus 413 G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~ 492 (1012)
+..+.+.++.|++ ..++.|+||++|||................++++||.|+.+|+||.++... ...
T Consensus 65 ~~~~~~~~~~p~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~~-----------~~~ 131 (303)
T 4e15_A 65 EGRQLVDVFYSEK--TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVTL-----------EQL 131 (303)
T ss_dssp STTCEEEEEECTT--CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSCH-----------HHH
T ss_pred CCCcEEEEEecCC--CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCCh-----------hHH
Confidence 4445667777864 246789999999986433322222223456666899999999999875421 123
Q ss_pred HhHHHHHHHHHHHc-CCCCCCcEEEEecChHHHHHHHHHhhCC-------CceeEEEEccCCCccccCcceeeeeccccc
Q psy1288 493 FDDFQCAAEYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQRP-------DLFGAAIVQVGNPEISDCGRWLIVHTMKDC 564 (1012)
Q Consensus 493 ~~D~~a~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p-------~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~ 564 (1012)
..|+.++++|+.+. ...++++|+++|+|+||++++.++.+.+ +.++++|+.+| +.|+....
T Consensus 132 ~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~---~~~~~~~~-------- 200 (303)
T 4e15_A 132 MTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCG---VYDLRELS-------- 200 (303)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESC---CCCCHHHH--------
T ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEee---eeccHhhh--------
Confidence 57888999999874 2345889999999999999998887543 27899999988 33311000
Q ss_pred ccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcc-cCCCCCCcccC
Q psy1288 565 KNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPL-HNIQGPDELKG 643 (1012)
Q Consensus 565 ~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~-~~~~~p~~~~~ 643 (1012)
...+ .+ ....++... +.+...+|. ..+. .
T Consensus 201 ----------~~~~---------------------~~--------~~~~~~~~~-----~~~~~~sp~~~~~~------~ 230 (303)
T 4e15_A 201 ----------NLES---------------------VN--------PKNILGLNE-----RNIESVSPMLWEYT------D 230 (303)
T ss_dssp ----------TCTT---------------------TS--------GGGTTCCCT-----TTTTTTCGGGCCCC------C
T ss_pred ----------cccc---------------------cc--------hhhhhcCCH-----HHHHHcCchhhccc------c
Confidence 0000 00 000011110 012344565 3333 2
Q ss_pred C----CCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCC
Q psy1288 644 K----QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 697 (1012)
Q Consensus 644 ~----~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg 697 (1012)
. +.| +|++||++|..|++.++.+++++|+.+ +.++.+.++++++|.
T Consensus 231 ~~~~~~~P-~lii~G~~D~~v~~~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~ 280 (303)
T 4e15_A 231 VTVWNSTK-IYVVAAEHDSTTFIEQSRHYADVLRKK-------GYKASFTLFKGYDHF 280 (303)
T ss_dssp GGGGTTSE-EEEEEEEESCHHHHHHHHHHHHHHHHH-------TCCEEEEEEEEEETT
T ss_pred cccCCCCC-EEEEEeCCCCCCchHHHHHHHHHHHHC-------CCceEEEEeCCCCch
Confidence 2 555 999999999999999999999999998 889999999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=150.25 Aligned_cols=235 Identities=12% Similarity=0.045 Sum_probs=160.8
Q ss_pred eeCCEEEEEEEcCCC-CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 113 RQGDHYFFFHNTGLQ-NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~-~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+.+.+++|.....+. ....|++.+..++..+.|+. +...+..++|||||++|||+....+. ..|+++|++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~-------~~~~v~~~~~Spdg~~la~~s~~~~~--~~i~~~d~~ 211 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-------SPQPLMSPAWSPDGSKLAYVTFESGR--SALVIQTLA 211 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE-------ESSCEEEEEECTTSSEEEEEECTTSS--CEEEEEETT
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeC-------CCCcceeeEEcCCCCEEEEEEecCCC--cEEEEEECC
Confidence 457899998875422 12688888887777777765 22357889999999999999876553 489999999
Q ss_pred CCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec---------cccceeeeeeecCCCEEE
Q psy1288 192 TGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV---------NVAPITSQYITNEGPQFV 262 (1012)
Q Consensus 192 tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~---------~~~~i~~~~~s~dg~~l~ 262 (1012)
+|+.+.+.........++|||||+.|+|+..... ...++..... ....+....|+|||+.|+
T Consensus 212 tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g---------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 212 NGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG---------SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp TCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS---------SCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEE
T ss_pred CCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC---------CceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEE
Confidence 9987665444444578999999999999864321 1112211110 002233557999999999
Q ss_pred EEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceE
Q psy1288 263 FKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGT 342 (1012)
Q Consensus 263 ~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~ 342 (1012)
+.++++. ..+|+.+|+.+++ .+.+..+. ..+.......+++.|++....++...|+++++.+++. ..+.... .
T Consensus 283 ~~s~~~g-~~~i~~~d~~~~~---~~~l~~~~-~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~ 355 (415)
T 2hqs_A 283 FTSDQAG-RPQVYKVNINGGA---PQRITWEG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L 355 (415)
T ss_dssp EEECTTS-SCEEEEEETTSSC---CEECCCSS-SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S
T ss_pred EEECCCC-CcEEEEEECCCCC---EEEEecCC-CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C
Confidence 9997543 4689999987765 34443332 2333333345667888887777778999999977765 3444332 4
Q ss_pred EEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 343 IVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 343 v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+..+.|+|||+.|++..... ....||.+|+
T Consensus 356 ~~~~~~spdg~~l~~~s~~~-~~~~l~~~d~ 385 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQG-MGSVLNLVST 385 (415)
T ss_dssp CEEEEECTTSSEEEEEEEET-TEEEEEEEET
T ss_pred cCCeEEcCCCCEEEEEEcCC-CccEEEEEEC
Confidence 56788999999988876532 2457999998
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-14 Score=150.13 Aligned_cols=217 Identities=13% Similarity=0.016 Sum_probs=144.9
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC----hhHHHHHHhC----CeEEEEEcCCC
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS----VTKIVFLRDF----NGIYAIPNIRG 472 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~----~~~~~~l~~~----G~~v~~~d~RG 472 (1012)
..+.+.+.+. +|..+.+.++.|+++...++.|+|+++||+.+........ ......+.++ |++|+.+|+|+
T Consensus 31 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~ 110 (268)
T 1jjf_A 31 QVVNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNA 110 (268)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCC
T ss_pred eEEEEEEeccccCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCC
Confidence 4566777765 6788999999999876667899999999986543221111 1123344444 59999999998
Q ss_pred CCCC-chhHHhhhhcCCCcchHhH-HHHHHHHHHHcCCC--CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCc
Q psy1288 473 GGEY-GERWHDGGRLLNKQNVFDD-FQCAAEYLIASGYT--QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPE 548 (1012)
Q Consensus 473 ~g~~-g~~~~~~~~~~~~~~~~~D-~~a~~~~l~~~~~~--d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~ 548 (1012)
.+.. ...|. ...++ +...+.++.+...+ |+++++++|+|+||++++.++.++|++|+++++.+|
T Consensus 111 ~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~--- 178 (268)
T 1jjf_A 111 AGPGIADGYE---------NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISA--- 178 (268)
T ss_dssp CCTTCSCHHH---------HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESC---
T ss_pred CCccccccHH---------HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCC---
Confidence 6531 11111 01123 23445555544333 789999999999999999999999999999999888
Q ss_pred cccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHc
Q psy1288 549 ISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLG 628 (1012)
Q Consensus 549 i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~ 628 (1012)
..++ . + +...+.... ..
T Consensus 179 ~~~~----------------------~-----------~----------------------~~~~~~~~~--~~------ 195 (268)
T 1jjf_A 179 APNT----------------------Y-----------P----------------------NERLFPDGG--KA------ 195 (268)
T ss_dssp CTTS----------------------C-----------C----------------------HHHHCTTTT--HH------
T ss_pred CCCC----------------------C-----------c----------------------hhhhcCcch--hh------
Confidence 1110 0 0 000011100 00
Q ss_pred CCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhh
Q psy1288 629 YSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPL 708 (1012)
Q Consensus 629 ~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~ 708 (1012)
...+.|++|++||..|+.++. +.++...|+++ +.++.+.++++++|++.. ..+.
T Consensus 196 -------------~~~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~----~~~~ 249 (268)
T 1jjf_A 196 -------------AREKLKLLFIACGTNDSLIGF--GQRVHEYCVAN-------NINHVYWLIQGGGHDFNV----WKPG 249 (268)
T ss_dssp -------------HHHHCSEEEEEEETTCTTHHH--HHHHHHHHHHT-------TCCCEEEEETTCCSSHHH----HHHH
T ss_pred -------------hhhcCceEEEEecCCCCCccH--HHHHHHHHHHC-------CCceEEEEcCCCCcCHhH----HHHH
Confidence 013456699999999998874 66788888887 889999999999999742 1245
Q ss_pred hhHHHHHHHHh
Q psy1288 709 TIPVIYFYLTS 719 (1012)
Q Consensus 709 ~~~~~~fl~~~ 719 (1012)
+.+.+.|+.+.
T Consensus 250 ~~~~~~~l~~~ 260 (268)
T 1jjf_A 250 LWNFLQMADEA 260 (268)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 67778898876
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-14 Score=157.94 Aligned_cols=262 Identities=17% Similarity=0.128 Sum_probs=153.5
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC---CcChhHHHHHHhCCeEEEEEcCCCCCCCc
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP---GFSVTKIVFLRDFNGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~d~RG~g~~g 477 (1012)
+..+.+.+.+.||..|.+.++.|.+. .++.|+||++|||....... .|.. ....|+++|++|+.+|+||++++.
T Consensus 80 ~~~~~~~~~~~~g~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~-~~~~la~~g~~vv~~d~r~~gg~~ 156 (361)
T 1jkm_A 80 VETSTETILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRR-WCTDLAAAGSVVVMVDFRNAWTAE 156 (361)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHH-HHHHHHHTTCEEEEEECCCSEETT
T ss_pred ceeeeeeeecCCCCeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhH-HHHHHHhCCCEEEEEecCCCCCCC
Confidence 45667788888998899999999763 23679999999985322222 2222 344555579999999999986431
Q ss_pred hhHHhhhhcCCCcchHhHHHHHHHHHHHcC-CCCCCcEEEEecChHHHHHHHHHhh-----CCCceeEEEEccCCCcccc
Q psy1288 478 ERWHDGGRLLNKQNVFDDFQCAAEYLIASG-YTQSSRLAIQGGSNGGLLTAACINQ-----RPDLFGAAIVQVGNPEISD 551 (1012)
Q Consensus 478 ~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~~~~~i~d 551 (1012)
........+.|+.++++|+.++. ....++|+++|+|+||.+++.++.+ .|++++++|+.+| +.+
T Consensus 157 -------~~~~~~~~~~D~~~~~~~v~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~---~~~ 226 (361)
T 1jkm_A 157 -------GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIP---YIS 226 (361)
T ss_dssp -------EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESC---CCC
T ss_pred -------CCCCCCccHHHHHHHHHHHHhhHHhcCCCeEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECC---ccc
Confidence 11223345789999999998762 1122399999999999999998887 7878999999988 222
Q ss_pred CcceeeeecccccccCcccccccCCCCcccc-cCCCCcchhhhhhhhhhhcccccccccccccc-CCCCChHHHHHHHcC
Q psy1288 552 CGRWLIVHTMKDCKNNMFHFCDLDTIPDRKI-EGKLPLTQVVHKVLDMLKFNKFTIGYFWESDY-GSPANSSQFEYLLGY 629 (1012)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~-~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~-g~p~~~~~~~~~~~~ 629 (1012)
.... +.. .........+. .....++.. .... + | ..+ +...... ....
T Consensus 227 ~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~--~--------~-~~~~~~~~~~~----~~~~ 275 (361)
T 1jkm_A 227 GGYA------------WDH-ERRLTELPSLVENDGYFIENG---GMAL--L--------V-RAYDPTGEHAE----DPIA 275 (361)
T ss_dssp CCTT------------SCH-HHHHHHCTHHHHTTTSSSCHH---HHHH--H--------H-HHHSSSSTTTT----CTTT
T ss_pred cccc------------ccc-ccccccCcchhhccCcccCHH---HHHH--H--------H-HHhCCCCCCCC----Cccc
Confidence 1000 000 00000000000 000000000 0000 0 0 000 0000000 0011
Q ss_pred CcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC-Ccc---ccc
Q psy1288 630 SPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG-KPT---TKQ 705 (1012)
Q Consensus 630 sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~-~~~---~~~ 705 (1012)
+|..... ..+.+. |++|++||+.|..++ ++.++..+|..+ +.++.++++++++|++. ... ...
T Consensus 276 ~p~~~~~--~~l~~l--~P~Lii~G~~D~~~~--~~~~~~~~l~~~-------g~~~~l~~~~g~~H~~~~~~~~~~~~~ 342 (361)
T 1jkm_A 276 WPYFASE--DELRGL--PPFVVAVNELDPLRD--EGIAFARRLARA-------GVDVAARVNIGLVHGADVIFRHWLPAA 342 (361)
T ss_dssp CGGGCCH--HHHTTC--CCEEEEEETTCTTHH--HHHHHHHHHHHT-------TCCEEEEEETTCCTTHHHHSGGGCHHH
T ss_pred CccccCh--hhHcCC--CceEEEEcCcCcchh--hHHHHHHHHHHc-------CCCEEEEEeCCCccCccccccccccHH
Confidence 2221100 001123 349999999999887 788889999988 88999999999999976 211 111
Q ss_pred -hhhhhHHHHHHHHh
Q psy1288 706 -FPLTIPVIYFYLTS 719 (1012)
Q Consensus 706 -~~~~~~~~~fl~~~ 719 (1012)
.+....+.+||.++
T Consensus 343 ~~~~~~~i~~fl~~~ 357 (361)
T 1jkm_A 343 LESTVRDVAGFAADR 357 (361)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 23455677888765
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=156.07 Aligned_cols=238 Identities=17% Similarity=0.150 Sum_probs=151.8
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
.+.+.+.+ ||.+|.++++.|. +.|+||++||+.+... .|. .....|.++||.|+.+|+||.|........
T Consensus 6 ~~~~~~~~-~g~~l~~~~~~p~------~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~~G~g~s~~~~~~ 75 (290)
T 3ksr_A 6 LSSIEIPV-GQDELSGTLLTPT------GMPGVLFVHGWGGSQH--HSL-VRAREAVGLGCICMTFDLRGHEGYASMRQS 75 (290)
T ss_dssp EEEEEEEE-TTEEEEEEEEEEE------SEEEEEEECCTTCCTT--TTH-HHHHHHHTTTCEEECCCCTTSGGGGGGTTT
T ss_pred eeeEEecC-CCeEEEEEEecCC------CCcEEEEeCCCCCCcC--cHH-HHHHHHHHCCCEEEEeecCCCCCCCCCccc
Confidence 45666766 7899999999886 5799999999865432 333 345667778999999999998755332111
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccc
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMK 562 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~ 562 (1012)
.......+|+.++++++..+..+++++++++|+|+||.+++.++.++| +++++...| .......|.
T Consensus 76 ----~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p--~~~~~~~~~------ 141 (290)
T 3ksr_A 76 ----VTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSP--ALYKDAHWD------ 141 (290)
T ss_dssp ----CBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESC--CCCCSSCTT------
T ss_pred ----ccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCc--chhhhhhhh------
Confidence 111234579999999999887778899999999999999999998887 556666655 010000000
Q ss_pred ccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCccc
Q psy1288 563 DCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELK 642 (1012)
Q Consensus 563 ~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~ 642 (1012)
.|.. ..+. . ..+...+.......... +...+ .
T Consensus 142 -----------------------~~~~-----~~~~---~-----~~~~~~~~~~~~~~~~~------~~~~~------~ 173 (290)
T 3ksr_A 142 -----------------------QPKV-----SLNA---D-----PDLMDYRRRALAPGDNL------ALAAC------A 173 (290)
T ss_dssp -----------------------SBHH-----HHHH---S-----TTHHHHTTSCCCGGGCH------HHHHH------H
T ss_pred -----------------------cccc-----cccC---C-----hhhhhhhhhhhhhcccc------HHHHH------H
Confidence 0000 0000 0 00000001110000000 00111 1
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+.+.| +|++||..|..+++.++..+...+... + .+.+.++++++|.+..... .......+.+||.+++..
T Consensus 174 ~~~~P-~lii~G~~D~~v~~~~~~~~~~~~~~~-------~-~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~~~~~ 243 (290)
T 3ksr_A 174 QYKGD-VLLVEAENDVIVPHPVMRNYADAFTNA-------R-SLTSRVIAGADHALSVKEH-QQEYTRALIDWLTEMVVG 243 (290)
T ss_dssp HCCSE-EEEEEETTCSSSCHHHHHHHHHHTTTS-------S-EEEEEEETTCCTTCCSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred hcCCC-eEEEEecCCcccChHHHHHHHHHhccC-------C-CceEEEcCCCCCCCCcchH-HHHHHHHHHHHHHHHhcC
Confidence 35667 999999999999999998888887665 3 6889999999998754322 123445667899888653
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.1e-15 Score=159.42 Aligned_cols=243 Identities=12% Similarity=0.057 Sum_probs=144.7
Q ss_pred eEEEEEEC-CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC--hhHHHHHHhCCeEEEEEcCC--CCCCC-
Q psy1288 403 TKQVFYPS-KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS--VTKIVFLRDFNGIYAIPNIR--GGGEY- 476 (1012)
Q Consensus 403 ~~~v~~~s-~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~d~R--G~g~~- 476 (1012)
.+.+.+.| .+|..+.+.++.|++.. .++.|+|+++||+.+... .|. .....++++.|++|+.+|.+ |.+..
T Consensus 22 ~~~~~~~s~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~ 98 (283)
T 4b6g_A 22 QQVWAHHAQTLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTEQ--NFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPN 98 (283)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCSH--HHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCC
T ss_pred EEEEEEechhhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCcc--chhhcccHHHHHhhCCeEEEEeccccccccccc
Confidence 34444554 47889999999998764 678999999999865432 221 11345666679999999964 43211
Q ss_pred --------chhHHhhhhcC-C-CcchHhHH-HHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 477 --------GERWHDGGRLL-N-KQNVFDDF-QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 477 --------g~~~~~~~~~~-~-~~~~~~D~-~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
|..|+...... + ....+.++ ...+..+++..+.++++++++|+|+||++++.++.++|++|+++++.+|
T Consensus 99 ~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~ 178 (283)
T 4b6g_A 99 DDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSP 178 (283)
T ss_dssp CSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESC
T ss_pred cccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhCCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECC
Confidence 11111111000 0 00111222 2222222333233468999999999999999999999999999999988
Q ss_pred CCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHH
Q psy1288 546 NPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEY 625 (1012)
Q Consensus 546 ~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~ 625 (1012)
+.+ .... |... ..+ ...+|... ..
T Consensus 179 ---~~~----------------------~~~~---------~~~~-----~~~------------~~~~g~~~-----~~ 202 (283)
T 4b6g_A 179 ---ILS----------------------PSLV---------PWGE-----KAF------------TAYLGKDR-----EK 202 (283)
T ss_dssp ---CCC----------------------GGGS---------HHHH-----HHH------------HHHHCSCG-----GG
T ss_pred ---ccc----------------------cccC---------cchh-----hhH------------HhhcCCch-----HH
Confidence 211 1000 0000 000 00011100 00
Q ss_pred HHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChH-HHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc
Q psy1288 626 LLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPV-HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 704 (1012)
Q Consensus 626 ~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~-~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~ 704 (1012)
+..++|...+.. -...|++|++||..|..++.. ++..+.++|+++ +.++.+.++|+++|++..
T Consensus 203 ~~~~~~~~~~~~-----~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~---- 266 (283)
T 4b6g_A 203 WQQYDANSLIQQ-----GYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAA-------NQPVDVRFHKGYDHSYYF---- 266 (283)
T ss_dssp GGGGCHHHHHHH-----TCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHH-------TCCCEEEEETTCCSSHHH----
T ss_pred HHhcCHHHHHHh-----cccCCCEEEEecCCCccCcchhhHHHHHHHHHHc-------CCCceEEEeCCCCcCHhH----
Confidence 112233322220 112334999999999998863 378899999998 889999999999998632
Q ss_pred chhhhhHHHHHHHHhC
Q psy1288 705 QFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 705 ~~~~~~~~~~fl~~~l 720 (1012)
....+.+.+.|+.+.+
T Consensus 267 ~~~~l~~~l~~~~~~l 282 (283)
T 4b6g_A 267 IASFIGEHIAYHAAFL 282 (283)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 2244567788888775
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=147.84 Aligned_cols=188 Identities=13% Similarity=0.029 Sum_probs=123.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHH---
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIA--- 505 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~--- 505 (1012)
....++||++||..... ..|.. ....+...|+.|+.++.+|.+.|...+....... ...+++..+.++.+++
T Consensus 19 ~~a~~~Vv~lHG~G~~~--~~~~~-l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 93 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGGTA--ADIIS-LQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQN--QPALDSALALVGEVVAEIE 93 (210)
T ss_dssp TTCSEEEEEECCTTCCH--HHHHG-GGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGG--TTHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCH--HHHHH-HHHHhCCCCeEEEeecCCCCCccccccCCCcccc--hHHHHHHHHHHHHHHHHHH
Confidence 34578999999943221 11211 1233444699999999887665543332211111 1223333333333332
Q ss_pred cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCC
Q psy1288 506 SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGK 585 (1012)
Q Consensus 506 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~ 585 (1012)
...++++||+++|+|+||.+++.++.++|++|+++++.++ +.
T Consensus 94 ~~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg-------------------------~l------------- 135 (210)
T 4h0c_A 94 AQGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTG-------------------------GL------------- 135 (210)
T ss_dssp HTTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETC-------------------------CC-------------
T ss_pred HhCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecC-------------------------CC-------------
Confidence 2347999999999999999999999999999999998887 00
Q ss_pred CCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHH
Q psy1288 586 LPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHS 665 (1012)
Q Consensus 586 ~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s 665 (1012)
+.. .. . +..... ...+.| +|++||..|+.||+.++
T Consensus 136 -~~~-----------------------~~----~-----------~~~~~~-----~~~~~P-vl~~hG~~D~~vp~~~~ 170 (210)
T 4h0c_A 136 -IGQ-----------------------EL----A-----------IGNYKG-----DFKQTP-VFISTGNPDPHVPVSRV 170 (210)
T ss_dssp -CSS-----------------------SC----C-----------GGGCCB-----CCTTCE-EEEEEEESCTTSCHHHH
T ss_pred -CCh-----------------------hh----h-----------hhhhhh-----hccCCc-eEEEecCCCCccCHHHH
Confidence 000 00 0 000000 023445 99999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 666 LKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 666 ~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
.+++..|+++ +.++++++||+.||+... +++.++.+||.
T Consensus 171 ~~~~~~L~~~-------g~~v~~~~ypg~gH~i~~------~el~~i~~wL~ 209 (210)
T 4h0c_A 171 QESVTILEDM-------NAAVSQVVYPGRPHTISG------DEIQLVNNTIL 209 (210)
T ss_dssp HHHHHHHHHT-------TCEEEEEEEETCCSSCCH------HHHHHHHHTTT
T ss_pred HHHHHHHHHC-------CCCeEEEEECCCCCCcCH------HHHHHHHHHHc
Confidence 9999999998 899999999999998743 44566666764
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=142.38 Aligned_cols=208 Identities=14% Similarity=0.049 Sum_probs=144.5
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC--CCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS--LQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
..+.+.+.+.|| ++.++++.|++.. .++.|+||++||+.... ....+.......|.++||.|+.+|+||.+.....
T Consensus 9 ~~~~~~~~~~~g-~~~~~~~~p~~~~-~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 86 (220)
T 2fuk_A 9 ESAALTLDGPVG-PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 86 (220)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred cceEEEEeCCCC-eEEEEEEeCCCCC-ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCCC
Confidence 457788899999 8999999887620 14589999999963211 1111112345667777999999999998754322
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeee
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~ 559 (1012)
+ .......+|+.++++++..+. +.++++++|+|+||.+++.++.+. .++++|...+ ..+
T Consensus 87 ~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~---~~~-------- 145 (220)
T 2fuk_A 87 F------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAP---PAG-------- 145 (220)
T ss_dssp C------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESC---CBT--------
T ss_pred c------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecc---ccc--------
Confidence 1 122345689999999998874 567999999999999999988876 6788888877 000
Q ss_pred cccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCC
Q psy1288 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPD 639 (1012)
Q Consensus 560 ~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~ 639 (1012)
. .. +....
T Consensus 146 --------------------------------------~-------------~~------------------~~~~~--- 153 (220)
T 2fuk_A 146 --------------------------------------R-------------WD------------------FSDVQ--- 153 (220)
T ss_dssp --------------------------------------T-------------BC------------------CTTCC---
T ss_pred --------------------------------------c-------------hh------------------hhhcc---
Confidence 0 00 11111
Q ss_pred cccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 640 ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 640 ~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
...| +|++||..|..+++..+.++..++. ..+.+.++++++|.+... ..+....+.+|+.++
T Consensus 154 ----~~~p-~l~i~g~~D~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~H~~~~~---~~~~~~~i~~~l~~~ 215 (220)
T 2fuk_A 154 ----PPAQ-WLVIQGDADEIVDPQAVYDWLETLE----------QQPTLVRMPDTSHFFHRK---LIDLRGALQHGVRRW 215 (220)
T ss_dssp ----CCSS-EEEEEETTCSSSCHHHHHHHHTTCS----------SCCEEEEETTCCTTCTTC---HHHHHHHHHHHHGGG
T ss_pred ----cCCc-EEEEECCCCcccCHHHHHHHHHHhC----------cCCcEEEeCCCCceehhh---HHHHHHHHHHHHHHH
Confidence 2456 9999999999999888766655542 346788899999997652 223455667888887
Q ss_pred CCC
Q psy1288 720 GPV 722 (1012)
Q Consensus 720 l~~ 722 (1012)
+..
T Consensus 216 l~~ 218 (220)
T 2fuk_A 216 LPA 218 (220)
T ss_dssp CSS
T ss_pred hhc
Confidence 653
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-13 Score=141.37 Aligned_cols=123 Identities=17% Similarity=0.115 Sum_probs=95.7
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC-CCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS-LQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
+...+.+.||.+|.+.++.|.+ .++.|+||++||+.... ....|.......+.+. |.|+.+|+||.++...
T Consensus 4 ~~~~~~~~dg~~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~~---- 75 (275)
T 3h04_A 4 IKYKVITKDAFALPYTIIKAKN---QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVSL---- 75 (275)
T ss_dssp EEEEEECTTSCEEEEEEECCSS---SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSCH----
T ss_pred eEEEEecCCcEEEEEEEEccCC---CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCcccc----
Confidence 4566778899999999998874 35789999999976322 2233444566777764 9999999998765321
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+|+.++++++.+. .+.++++++|+|+||.+++.++.+ +.++++|+.+|
T Consensus 76 -------~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~ 127 (275)
T 3h04_A 76 -------DCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYG 127 (275)
T ss_dssp -------HHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESC
T ss_pred -------chhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccc
Confidence 12357888899999887 567899999999999999999888 67899999888
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=151.82 Aligned_cols=243 Identities=15% Similarity=0.095 Sum_probs=147.2
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHH-hCCeEEEEEcCCCCCCCchh
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLR-DFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~-~~G~~v~~~d~RG~g~~g~~ 479 (1012)
..+.+.+.++|| .|++.++ +. .++.|+||++|||....... .+.. +...++ +.|+.|+.+|+||.++..
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~Vv~~dyrg~g~~~-- 125 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDA-LCRRIARLSNSTVVSVDYRLAPEHK-- 125 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHH-HHHHHHHHHTSEEEEEECCCTTTSC--
T ss_pred eEEEEEecCCCC-cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHH-HHHHHHHHhCCEEEEecCCCCCCCC--
Confidence 477888888888 8888888 43 35679999999986322222 2332 344454 469999999999987642
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCCc----eeEEEEccCCCccccC
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPDL----FGAAIVQVGNPEISDC 552 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~~i~d~ 552 (1012)
......|+.++++|+.+.. .+++++++++|+|+||.+++.++.+.++. ++++++.+| +.++
T Consensus 126 ---------~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p---~~~~ 193 (311)
T 1jji_A 126 ---------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYP---VVNF 193 (311)
T ss_dssp ---------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESC---CCCS
T ss_pred ---------CCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCC---ccCC
Confidence 1234578888889988762 35778999999999999999888776655 899999888 2221
Q ss_pred cceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcc
Q psy1288 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPL 632 (1012)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~ 632 (1012)
.. ....+..... ....++.. ...+. |....+...+.. ....+|.
T Consensus 194 ~~------------~~~~~~~~~~-------~~~~~~~~---~~~~~----------~~~~~~~~~~~~----~~~~~p~ 237 (311)
T 1jji_A 194 VA------------PTPSLLEFGE-------GLWILDQK---IMSWF----------SEQYFSREEDKF----NPLASVI 237 (311)
T ss_dssp SS------------CCHHHHHTSS-------SCSSCCHH---HHHHH----------HHHHCSSGGGGG----CTTTSGG
T ss_pred CC------------CCccHHHhcC-------CCccCCHH---HHHHH----------HHHhCCCCccCC----CcccCcc
Confidence 00 0000000000 00001110 00000 000001000000 0112343
Q ss_pred cCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc---ccchhhh
Q psy1288 633 HNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT---TKQFPLT 709 (1012)
Q Consensus 633 ~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~---~~~~~~~ 709 (1012)
.. . -...|++|++||+.|+.+ .++..+..+|+++ +.++.++++++++|++.... ....+..
T Consensus 238 ~~-~------l~~~~P~li~~G~~D~l~--~~~~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~ 301 (311)
T 1jji_A 238 FA-D------LENLPPALIITAEYDPLR--DEGEVFGQMLRRA-------GVEASIVRYRGVLHGFINYYPVLKAARDAI 301 (311)
T ss_dssp GS-C------CTTCCCEEEEEEEECTTH--HHHHHHHHHHHHT-------TCCEEEEEEEEEETTGGGGTTTCHHHHHHH
T ss_pred cc-c------ccCCChheEEEcCcCcch--HHHHHHHHHHHHc-------CCCEEEEEECCCCeeccccCCcCHHHHHHH
Confidence 31 1 123456999999999987 4677788899988 88999999999999985422 1123344
Q ss_pred hHHHHHHH
Q psy1288 710 IPVIYFYL 717 (1012)
Q Consensus 710 ~~~~~fl~ 717 (1012)
..+.+||.
T Consensus 302 ~~i~~fl~ 309 (311)
T 1jji_A 302 NQIAALLV 309 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55666765
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=148.92 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=140.6
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.||.+|.++++.|++. .++.|.||++||..+......|.. ....|.++||.|+.+|+||.|........ ....
T Consensus 8 ~~g~~l~~~~~~p~~~--~~~~p~vvl~HG~~~~~~~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~~~~----~~~~ 80 (251)
T 2wtm_A 8 CDGIKLNAYLDMPKNN--PEKCPLCIIIHGFTGHSEERHIVA-VQETLNEIGVATLRADMYGHGKSDGKFED----HTLF 80 (251)
T ss_dssp ETTEEEEEEEECCTTC--CSSEEEEEEECCTTCCTTSHHHHH-HHHHHHHTTCEEEEECCTTSTTSSSCGGG----CCHH
T ss_pred cCCcEEEEEEEccCCC--CCCCCEEEEEcCCCcccccccHHH-HHHHHHHCCCEEEEecCCCCCCCCCcccc----CCHH
Confidence 4899999998888642 245789999999765421222332 34556667999999999998854321110 0111
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCccc
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFH 570 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~ 570 (1012)
...+|+.+.++++.+.... +++.++|+|+||.+++.++.++|++++++|...| ......... ..+ +..
T Consensus 81 ~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~---~~~~~~~~~-~~~------~~~ 148 (251)
T 2wtm_A 81 KWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSP---AAMIPEIAR-TGE------LLG 148 (251)
T ss_dssp HHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESC---CTTHHHHHH-HTE------ETT
T ss_pred HHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECc---HHHhHHHHh-hhh------hcc
Confidence 2346777777777654322 4899999999999999999999999999998877 111000000 000 000
Q ss_pred -ccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcE
Q psy1288 571 -FCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPAT 649 (1012)
Q Consensus 571 -~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~v 649 (1012)
..+...++.. +.+ + .+.......+..+...++...+. ++++| +
T Consensus 149 ~~~~~~~~~~~--------------~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~------~i~~P-~ 192 (251)
T 2wtm_A 149 LKFDPENIPDE--------------LDA------------W---DGRKLKGNYVRVAQTIRVEDFVD------KYTKP-V 192 (251)
T ss_dssp EECBTTBCCSE--------------EEE------------T---TTEEEETHHHHHHTTCCHHHHHH------HCCSC-E
T ss_pred ccCCchhcchH--------------Hhh------------h---hccccchHHHHHHHccCHHHHHH------hcCCC-E
Confidence 0000000000 000 0 00000001111111122211222 46778 9
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 650 LLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 650 LiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
|++||.+|..+++..+.++.+.+ ..+.+.+++++||.. .. ........+.+|+.+++
T Consensus 193 lii~G~~D~~v~~~~~~~~~~~~-----------~~~~~~~~~~~gH~~-~~--~~~~~~~~i~~fl~~~~ 249 (251)
T 2wtm_A 193 LIVHGDQDEAVPYEASVAFSKQY-----------KNCKLVTIPGDTHCY-DH--HLELVTEAVKEFMLEQI 249 (251)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHS-----------SSEEEEEETTCCTTC-TT--THHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcChHHHHHHHHhC-----------CCcEEEEECCCCccc-ch--hHHHHHHHHHHHHHHhc
Confidence 99999999999998887665543 235788899999998 32 22244566778988764
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=155.85 Aligned_cols=269 Identities=14% Similarity=0.133 Sum_probs=155.3
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
..+++.++. +|..|+++++.+ + .++.|+||++||..+... .|.......+.++||.|+++|+||.|.....
T Consensus 134 ~~~~~~i~~-~~~~l~~~~~~~-~---~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~g~~vi~~D~~G~G~s~~~-- 204 (405)
T 3fnb_A 134 PLKSIEVPF-EGELLPGYAIIS-E---DKAQDTLIVVGGGDTSRE--DLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQ-- 204 (405)
T ss_dssp CCEEEEEEE-TTEEEEEEEECC-S---SSCCCEEEEECCSSCCHH--HHHHHTHHHHHHTTCEEEEECCTTSTTGGGG--
T ss_pred CcEEEEEeE-CCeEEEEEEEcC-C---CCCCCEEEEECCCCCCHH--HHHHHHHHHHHhCCcEEEEEcCCCCcCCCCC--
Confidence 356666666 688899888743 2 345699999999743322 2211112123347999999999998764211
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecc
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTM 561 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~ 561 (1012)
..........|+.++++++.... .+++++|+|+||++++.++.++| +++++|+..| +.++.....
T Consensus 205 ---~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p---~~~~~~~~~---- 269 (405)
T 3fnb_A 205 ---GLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTP---IYDVAEVFR---- 269 (405)
T ss_dssp ---TCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESC---CSCHHHHHH----
T ss_pred ---CCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecC---cCCHHHHHH----
Confidence 11222344678888888877654 78999999999999999999888 8899999888 333211100
Q ss_pred cccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcc
Q psy1288 562 KDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDEL 641 (1012)
Q Consensus 562 ~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~ 641 (1012)
.. +.....++..................... +. .....++.......++.+..+.+...+.
T Consensus 270 ----~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~----- 330 (405)
T 3fnb_A 270 ----IS---FSTALKAPKTILKWGSKLVTSVNKVAEVN-LN------KYAWQFGQVDFITSVNEVLEQAQIVDYN----- 330 (405)
T ss_dssp ----HH---CC------------------CCCHHHHHH-HH------HHHHHHTSSSHHHHHHHHHHHCCCCCGG-----
T ss_pred ----Hh---hhhhhhCcHHHHHHHHHHhhccchhHHHH-HH------HhhhhcCCCCHHHHHHHHHHhhcccCHh-----
Confidence 00 00000000000000000000000000000 00 0000122222222333444444444333
Q ss_pred cCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcccc-chhhhhHHHHHHHHhC
Q psy1288 642 KGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK-QFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 642 ~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~-~~~~~~~~~~fl~~~l 720 (1012)
++++| +|++||..|..+++.++.+++..+..+ +.++.+.++++..|+....... .......+.+||++.+
T Consensus 331 -~i~~P-vLii~G~~D~~v~~~~~~~l~~~l~~~-------~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l 401 (405)
T 3fnb_A 331 -KIDVP-SLFLVGAGEDSELMRQSQVLYDNFKQR-------GIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIF 401 (405)
T ss_dssp -GCCSC-EEEEEETTSCHHHHHHHHHHHHHHHHT-------TCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHH
T ss_pred -hCCCC-EEEEecCCCcCCChHHHHHHHHHhccC-------CCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHh
Confidence 67888 999999999999999999999999988 7789999997776664322222 2334466778999887
Q ss_pred CC
Q psy1288 721 PV 722 (1012)
Q Consensus 721 ~~ 722 (1012)
+.
T Consensus 402 ~~ 403 (405)
T 3fnb_A 402 KK 403 (405)
T ss_dssp C-
T ss_pred Cc
Confidence 54
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=141.20 Aligned_cols=204 Identities=18% Similarity=0.075 Sum_probs=145.7
Q ss_pred CceEEEEEECC--CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 401 FETKQVFYPSK--DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 401 ~~~~~v~~~s~--DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
+..+.+.+++. +|.. .+.+++|... ..++.|+||++||..+... .|.. ....|+++||.|+.+|+||.+....
T Consensus 23 ~~~~~~~~~~~~~~~~~-~~~l~~p~~~-~~~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~g~g~~~~ 97 (262)
T 1jfr_A 23 YATSQTSVSSLVASGFG-GGTIYYPTST-ADGTFGAVVISPGFTAYQS--SIAW-LGPRLASQGFVVFTIDTNTTLDQPD 97 (262)
T ss_dssp SCEEEEEECTTTCSSSC-CEEEEEESCC-TTCCEEEEEEECCTTCCGG--GTTT-HHHHHHTTTCEEEEECCSSTTCCHH
T ss_pred CCccceEecceeccCCC-ceeEEecCCC-CCCCCCEEEEeCCcCCCch--hHHH-HHHHHHhCCCEEEEeCCCCCCCCCc
Confidence 44556666654 3332 4567777652 2467799999999765443 3333 3556767899999999999775422
Q ss_pred hHHhhhhcCCCcchHhHHHHHHHHHHH----cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcc
Q psy1288 479 RWHDGGRLLNKQNVFDDFQCAAEYLIA----SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGR 554 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~a~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~ 554 (1012)
. ...|+..+++++.+ ....+.++++++|+|+||.+++.++.++|+ ++++|...|
T Consensus 98 ~------------~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p--------- 155 (262)
T 1jfr_A 98 S------------RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTG--------- 155 (262)
T ss_dssp H------------HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESC---------
T ss_pred h------------hHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecc---------
Confidence 1 23577888888887 344677899999999999999999988887 788887777
Q ss_pred eeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccC
Q psy1288 555 WLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHN 634 (1012)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~ 634 (1012)
+. . ...
T Consensus 156 ----------------~~---------------------------------------~-------------------~~~ 161 (262)
T 1jfr_A 156 ----------------WN---------------------------------------T-------------------DKT 161 (262)
T ss_dssp ----------------CC---------------------------------------S-------------------CCC
T ss_pred ----------------cC---------------------------------------c-------------------ccc
Confidence 00 0 011
Q ss_pred CCCCCcccCCCCCcEEEEeeCCCCCCChHH-HHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHH
Q psy1288 635 IQGPDELKGKQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVI 713 (1012)
Q Consensus 635 ~~~p~~~~~~~~P~vLiihG~~D~~v~~~~-s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~ 713 (1012)
+. ..+.| +|++||..|..+++.. +.+++..+. . +.++.+.++++++|.+..... .+....+.
T Consensus 162 ~~------~~~~P-~l~i~G~~D~~~~~~~~~~~~~~~l~-~-------~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~ 224 (262)
T 1jfr_A 162 WP------ELRTP-TLVVGADGDTVAPVATHSKPFYESLP-G-------SLDKAYLELRGASHFTPNTSD--TTIAKYSI 224 (262)
T ss_dssp CT------TCCSC-EEEEEETTCSSSCTTTTHHHHHHHSC-T-------TSCEEEEEETTCCTTGGGSCC--HHHHHHHH
T ss_pred cc------ccCCC-EEEEecCccccCCchhhHHHHHHHhh-c-------CCCceEEEeCCCCcCCcccch--HHHHHHHH
Confidence 11 35667 9999999999999998 888887763 2 457889999999999765432 24456777
Q ss_pred HHHHHhCCC
Q psy1288 714 YFYLTSGPV 722 (1012)
Q Consensus 714 ~fl~~~l~~ 722 (1012)
+||.++++.
T Consensus 225 ~fl~~~l~~ 233 (262)
T 1jfr_A 225 SWLKRFIDS 233 (262)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcC
Confidence 999988765
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=147.10 Aligned_cols=207 Identities=15% Similarity=0.093 Sum_probs=136.8
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh--CCeEEEEEcCC---CCCCCchhHHhhhhc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD--FNGIYAIPNIR---GGGEYGERWHDGGRL 486 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~R---G~g~~g~~~~~~~~~ 486 (1012)
.+.+.-.+...|.. +.++.|+||++||..... ..|.. ....+.. .++.++.++-. ...+.|..|++....
T Consensus 48 ~~~~~l~y~~~p~~--~~~~~plVI~LHG~G~~~--~~~~~-~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~ 122 (285)
T 4fhz_A 48 IMTRKLTFGRRGAA--PGEATSLVVFLHGYGADG--ADLLG-LAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWL 122 (285)
T ss_dssp CCCCCCCEEEEESC--TTCCSEEEEEECCTTBCH--HHHHT-THHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHH
T ss_pred cccccceeecCCCC--CCCCCcEEEEEcCCCCCH--HHHHH-HHHHHHHhCCCeEEEecCCCcccccCCCcccccccccc
Confidence 34333333444443 467789999999953221 12211 1233332 27888888742 122345555431110
Q ss_pred C--CC-------cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceee
Q psy1288 487 L--NK-------QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLI 557 (1012)
Q Consensus 487 ~--~~-------~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~ 557 (1012)
. .. .....++.+.++.++++..++++||+++|+|+||.+++.++.++|+.|++++..++
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG------------ 190 (285)
T 4fhz_A 123 DGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSG------------ 190 (285)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESC------------
T ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeec------------
Confidence 0 00 11233455556666666668999999999999999999999999999999998887
Q ss_pred eecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCC
Q psy1288 558 VHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQG 637 (1012)
Q Consensus 558 ~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~ 637 (1012)
+ ++. ++.. . ...
T Consensus 191 -------------~--------------l~~-------------------------------~~~~---~-----~~~-- 202 (285)
T 4fhz_A 191 -------------R--------------LLA-------------------------------PERL---A-----EEA-- 202 (285)
T ss_dssp -------------C--------------CSC-------------------------------HHHH---H-----HHC--
T ss_pred -------------C--------------ccC-------------------------------chhh---h-----hhh--
Confidence 0 000 0000 0 000
Q ss_pred CCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 638 PDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 638 p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
..+.| +|++||..|+.||+.++.++.+.|+++ +.++.+++|++.||+... +++.++.+||.
T Consensus 203 -----~~~~P-vl~~hG~~D~~Vp~~~~~~~~~~L~~~-------g~~~~~~~y~g~gH~i~~------~~l~~~~~fL~ 263 (285)
T 4fhz_A 203 -----RSKPP-VLLVHGDADPVVPFADMSLAGEALAEA-------GFTTYGHVMKGTGHGIAP------DGLSVALAFLK 263 (285)
T ss_dssp -----CCCCC-EEEEEETTCSSSCTHHHHHHHHHHHHT-------TCCEEEEEETTCCSSCCH------HHHHHHHHHHH
T ss_pred -----hhcCc-ccceeeCCCCCcCHHHHHHHHHHHHHC-------CCCEEEEEECCCCCCCCH------HHHHHHHHHHH
Confidence 23455 999999999999999999999999999 999999999999998742 56778889999
Q ss_pred HhCCC
Q psy1288 718 TSGPV 722 (1012)
Q Consensus 718 ~~l~~ 722 (1012)
++|..
T Consensus 264 ~~Lpd 268 (285)
T 4fhz_A 264 ERLPD 268 (285)
T ss_dssp HHCC-
T ss_pred HHCcC
Confidence 99864
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-14 Score=151.91 Aligned_cols=246 Identities=11% Similarity=-0.007 Sum_probs=144.6
Q ss_pred CceEEEEEECC-CCceEEEEEEEeCCCC----CCCCCcEEEEEcCCCCCCCCCCcCh--hHHHHHHhCCeEEEEEcCCCC
Q psy1288 401 FETKQVFYPSK-DGTKIPMFILSRKGAQ----LDGNNPCILYGYGGFAVSLQPGFSV--TKIVFLRDFNGIYAIPNIRGG 473 (1012)
Q Consensus 401 ~~~~~v~~~s~-DG~~i~~~l~~p~~~~----~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~d~RG~ 473 (1012)
+..+.+.+.+. +|..+.+.++.|++.+ ..++.|+||++||+.+... .|.. ....++++.|++|+.++++++
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~ 82 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHN--SWLKRTNVERLLRGTNLIVVMPNTSNG 82 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCCTT--HHHHHSCHHHHTTTCCCEEEECCCTTS
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHH--HHHhccCHHHHHhcCCeEEEEECCCCC
Confidence 45666777664 6889999999998752 3567899999999865332 3332 233455557999999999876
Q ss_pred CCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCc
Q psy1288 474 GEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCG 553 (1012)
Q Consensus 474 g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~ 553 (1012)
+..... . + ........+|+...++.+..+...++++++++|+|+||.+++.++. +|++|+++++.+| ..+
T Consensus 83 ~~~~~~--~-~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~---~~~-- 152 (263)
T 2uz0_A 83 WYTDTQ--Y-G-FDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSG---ALS-- 152 (263)
T ss_dssp TTSBCT--T-S-CBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESC---CCC--
T ss_pred ccccCC--C-c-ccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecC---Ccc--
Confidence 532110 0 0 0000011234444444333223457899999999999999999888 8999999999988 211
Q ss_pred ceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCccc
Q psy1288 554 RWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLH 633 (1012)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~ 633 (1012)
...++.... ..- ... .+...++.+... .+..++|..
T Consensus 153 --------------------~~~~~~~~~---~~~------~~~-----------~~~~~~~~~~~~----~~~~~~~~~ 188 (263)
T 2uz0_A 153 --------------------FQNFSPESQ---NLG------SPA-----------YWRGVFGEIRDW----TTSPYSLES 188 (263)
T ss_dssp --------------------SSSCCGGGT---TCS------CHH-----------HHHHHHCCCSCT----TTSTTSHHH
T ss_pred --------------------hhhcccccc---ccc------cch-----------hHHHHcCChhhh----ccccCCHHH
Confidence 111100000 000 000 000011111100 012223333
Q ss_pred CCCCCCcccCCCC-CcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHH
Q psy1288 634 NIQGPDELKGKQY-PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPV 712 (1012)
Q Consensus 634 ~~~~p~~~~~~~~-P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~ 712 (1012)
.+. ..+- +++|++||..|..++ .+..+.+.|+.. +.++.+.++++ +|.+.. ..+.+.++
T Consensus 189 ~~~------~~~~~~p~li~~G~~D~~v~--~~~~~~~~l~~~-------g~~~~~~~~~g-~H~~~~----~~~~~~~~ 248 (263)
T 2uz0_A 189 LAK------KSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKL-------GFDVTYSHSAG-THEWYY----WEKQLEVF 248 (263)
T ss_dssp HGG------GCCSCSEEEEEEETTSTTHH--HHHHHHHHHHHT-------TCEEEEEEESC-CSSHHH----HHHHHHHH
T ss_pred HHH------hccCCCeEEEEeCCCchhhH--HHHHHHHHHHHC-------CCCeEEEECCC-CcCHHH----HHHHHHHH
Confidence 322 1221 349999999998873 567888888887 88999999998 998631 12455677
Q ss_pred HHHHHHhCCC
Q psy1288 713 IYFYLTSGPV 722 (1012)
Q Consensus 713 ~~fl~~~l~~ 722 (1012)
++|+.++++.
T Consensus 249 ~~~l~~~l~~ 258 (263)
T 2uz0_A 249 LTTLPIDFKL 258 (263)
T ss_dssp HHHSSSCCCC
T ss_pred HHHHHhhccc
Confidence 8888877654
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=145.43 Aligned_cols=246 Identities=15% Similarity=0.101 Sum_probs=147.0
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
..+.+.+. .||.+|.+.++.|.+ .+.|+||++||..+......|. .....|.++||.|+.+|+||.|.......
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~~ 94 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG----EIYDMAIIFHGFTANRNTSLLR-EIANSLRDENIASVRFDFNGHGDSDGKFE 94 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS----SSEEEEEEECCTTCCTTCHHHH-HHHHHHHHTTCEEEEECCTTSTTSSSCGG
T ss_pred cceEEEec-cCCEEEEEEEEcCCC----CCCCEEEEEcCCCCCccccHHH-HHHHHHHhCCcEEEEEccccccCCCCCCC
Confidence 34455544 589999999998864 3579999999986543222222 34556666799999999999876543211
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecc
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTM 561 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~ 561 (1012)
. .......+|+.+.++++.++. ..++++++|+|+||.+++.++.++|+++++++...| ..+......
T Consensus 95 ~----~~~~~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~---~~~~~~~~~---- 161 (270)
T 3pfb_A 95 N----MTVLNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAP---AATLKGDAL---- 161 (270)
T ss_dssp G----CCHHHHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC---CTHHHHHHH----
T ss_pred c----cCHHHHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEecc---ccccchhhh----
Confidence 1 111233568888888887753 235899999999999999999999999999999887 111000000
Q ss_pred cccccCccc-ccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCc
Q psy1288 562 KDCKNNMFH-FCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDE 640 (1012)
Q Consensus 562 ~~~~~~~~~-~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~ 640 (1012)
. ..+.. ..+...++. .+ ..............+...++...+.
T Consensus 162 ~---~~~~~~~~~~~~~~~------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~---- 204 (270)
T 3pfb_A 162 E---GNTQGVTYNPDHIPD------------------RL------------PFKDLTLGGFYLRIAQQLPIYEVSA---- 204 (270)
T ss_dssp H---TEETTEECCTTSCCS------------------EE------------EETTEEEEHHHHHHHHHCCHHHHHT----
T ss_pred h---hhhhccccCcccccc------------------cc------------cccccccchhHhhcccccCHHHHHh----
Confidence 0 00000 000000000 00 0000000112223333333333333
Q ss_pred ccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 641 LKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 641 ~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
..+.| +|++||..|..+++..+.++.+.+ ..+.+.+++++||.+.... .......+.+||.+.
T Consensus 205 --~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~-----------~~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 205 --QFTKP-VCLIHGTDDTVVSPNASKKYDQIY-----------QNSTLHLIEGADHCFSDSY--QKNAVNLTTDFLQNN 267 (270)
T ss_dssp --TCCSC-EEEEEETTCSSSCTHHHHHHHHHC-----------SSEEEEEETTCCTTCCTHH--HHHHHHHHHHHHC--
T ss_pred --hCCcc-EEEEEcCCCCCCCHHHHHHHHHhC-----------CCCeEEEcCCCCcccCccc--hHHHHHHHHHHHhhc
Confidence 56788 999999999999988877655542 2468899999999876321 223344555676654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-12 Score=147.55 Aligned_cols=216 Identities=16% Similarity=0.147 Sum_probs=151.1
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
.++|||++++|...+++ ...|++.+..+++.+.+... ...+..++|||||++|+|+.+.+|. .+||++|
T Consensus 185 ~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~-------~~~~~~~~~spdg~~la~~~~~~g~--~~i~~~d 253 (415)
T 2hqs_A 185 AWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASF-------PRHNGAPAFSPDGSKLAFALSKTGS--LNLYVMD 253 (415)
T ss_dssp EECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECC-------SSCEEEEEECTTSSEEEEEECTTSS--CEEEEEE
T ss_pred EEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecC-------CCcccCEEEcCCCCEEEEEEecCCC--ceEEEEE
Confidence 34699999999987642 36788888888877777652 2357789999999999999887664 4899999
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc---------ccceeeeeeecCCCE
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN---------VAPITSQYITNEGPQ 260 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~---------~~~i~~~~~s~dg~~ 260 (1012)
+++++..+++........++|||||+.|+|.+.+.. ..+++...... ...+....|+|||+.
T Consensus 254 ~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g---------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 254 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG---------RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF 324 (415)
T ss_dssp TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS---------SCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSE
T ss_pred CCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCC---------CcEEEEEECCCCCEEEEecCCCcccCeEECCCCCE
Confidence 999987665544444678999999999999985421 11222111100 012234569999999
Q ss_pred EEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCc
Q psy1288 261 FVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDV 340 (1012)
Q Consensus 261 l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~ 340 (1012)
|++....+. ...|+.+|+.+++ .+.+.... .+......++++.|++....++...|++++++ |+..+.++...
T Consensus 325 l~~~~~~~g-~~~i~~~d~~~~~---~~~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~ 397 (415)
T 2hqs_A 325 MVMVSSNGG-QQHIAKQDLATGG---VQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD 397 (415)
T ss_dssp EEEEEECSS-CEEEEEEETTTCC---EEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSS
T ss_pred EEEEECcCC-ceEEEEEECCCCC---EEEecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCC
Confidence 999886542 5789999998765 34444332 22222233465678888777778899999995 55556777667
Q ss_pred eEEEeecccccC
Q psy1288 341 GTIVGFSGKKKY 352 (1012)
Q Consensus 341 ~~v~~~~~spdg 352 (1012)
+.+..++|+|.-
T Consensus 398 ~~v~~~~~~~~~ 409 (415)
T 2hqs_A 398 GQVKFPAWSPYL 409 (415)
T ss_dssp SEEEEEEECCCC
T ss_pred CCCcCCcccccc
Confidence 788889998753
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-13 Score=147.40 Aligned_cols=192 Identities=19% Similarity=0.112 Sum_probs=141.1
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.. .+.++.|... .+.|+||++||..+... .|. .....|+++||.|+.+|+||.++.....
T Consensus 79 ~~g~~-~~~~~~p~~~---~~~p~vv~~HG~~~~~~--~~~-~~~~~la~~G~~vv~~d~~g~g~s~~~~---------- 141 (306)
T 3vis_A 79 ADGFG-GGTIYYPREN---NTYGAIAISPGYTGTQS--SIA-WLGERIASHGFVVIAIDTNTTLDQPDSR---------- 141 (306)
T ss_dssp CSSSC-CEEEEEESSC---SCEEEEEEECCTTCCHH--HHH-HHHHHHHTTTEEEEEECCSSTTCCHHHH----------
T ss_pred cCCCc-ceEEEeeCCC---CCCCEEEEeCCCcCCHH--HHH-HHHHHHHhCCCEEEEecCCCCCCCcchH----------
Confidence 45554 3567777653 36899999999754332 232 3456677789999999999977543221
Q ss_pred chHhHHHHHHHHHHHc------CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccccc
Q psy1288 491 NVFDDFQCAAEYLIAS------GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDC 564 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~ 564 (1012)
..|+.++++++.+. ..+++++++++|+|+||.+++.++.++|+ +++++...|
T Consensus 142 --~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~------------------- 199 (306)
T 3vis_A 142 --ARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTP------------------- 199 (306)
T ss_dssp --HHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESC-------------------
T ss_pred --HHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEecc-------------------
Confidence 25788888999887 67788999999999999999999998887 788887777
Q ss_pred ccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCC
Q psy1288 565 KNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGK 644 (1012)
Q Consensus 565 ~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~ 644 (1012)
+. . ...+. +.
T Consensus 200 ------~~-------------------------------------------~---------------~~~~~------~~ 209 (306)
T 3vis_A 200 ------WH-------------------------------------------L---------------NKSWR------DI 209 (306)
T ss_dssp ------CC-------------------------------------------S---------------CCCCT------TC
T ss_pred ------cc-------------------------------------------C---------------ccccc------cC
Confidence 00 0 00111 35
Q ss_pred CCCcEEEEeeCCCCCCChH-HHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 645 QYPATLLMTADHDDRVSPV-HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 645 ~~P~vLiihG~~D~~v~~~-~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+.| +|++||..|..+++. ++..++..+... + ++.+.++++++|++..... .+....+.+||.++++.
T Consensus 210 ~~P-~lii~G~~D~~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~g~gH~~~~~~~--~~~~~~i~~fl~~~l~~ 277 (306)
T 3vis_A 210 TVP-TLIIGAEYDTIASVTLHSKPFYNSIPSP-------T-DKAYLELDGASHFAPNITN--KTIGMYSVAWLKRFVDE 277 (306)
T ss_dssp CSC-EEEEEETTCSSSCTTTTHHHHHHTCCTT-------S-CEEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSC
T ss_pred CCC-EEEEecCCCcccCcchhHHHHHHHhccC-------C-CceEEEECCCCccchhhch--hHHHHHHHHHHHHHccC
Confidence 566 999999999999998 688877776654 4 8899999999999765433 24456777999998765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-12 Score=141.17 Aligned_cols=236 Identities=11% Similarity=0.089 Sum_probs=155.1
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC-----------
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS----------- 177 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~----------- 177 (1012)
..++|||++++|....++.+...||+.+..+++.++++.. .. +..+.|||||++|+|....
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-------SE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 3456999999999886544567899999888888888762 23 7889999999999999853
Q ss_pred ------CC-----CceEEEEEEECCCCce-eceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc
Q psy1288 178 ------SG-----SDWTSMHFKDVATGKE-YPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN 245 (1012)
Q Consensus 178 ------~G-----~~~~~L~v~dl~tg~~-~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~ 245 (1012)
.| ....+||++|+++|+. .+++. . ....+.||||| |+|+........ .......++......
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~--~~~~~~~l~~~d~~~ 209 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP--QYFKFWDIYIWEDGK 209 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC--CSSCCEEEEEEETTE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccc--cccccccEEEeCCCc
Confidence 12 1246899999999987 55554 3 55789999999 777764321000 000012232222000
Q ss_pred c----cceeeeeeecCCCEEEEEECCCC----CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcC
Q psy1288 246 V----APITSQYITNEGPQFVFKTNKDA----PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHH 317 (1012)
Q Consensus 246 ~----~~i~~~~~s~dg~~l~~~tn~~~----~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (1012)
. .......++|||++|++.++... ...+|+.+| +++ .+.++...+..+.....+.+ + +++....+
T Consensus 210 ~~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~sd-g-~~~~~~~~ 282 (347)
T 2gop_A 210 EEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIKDG-K-VYFTLFEE 282 (347)
T ss_dssp EEEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEETT-E-EEEEEEET
T ss_pred eEEeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc---eEeccccCCcccCCccEEcC-c-EEEEEecC
Confidence 0 00112234999999999987542 357899998 333 45565543333322244444 4 77777788
Q ss_pred ceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEe
Q psy1288 318 VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372 (1012)
Q Consensus 318 g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d 372 (1012)
+..+|+ ++ +|+....+. ..+.+..+++++ .++++.++...|.+||.+|
T Consensus 283 ~~~~l~-~~--~g~~~~~~~-~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 283 GSVNLY-IW--DGEIKPIAK-GRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TEEEEE-EE--SSSEEEEEC-SSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred CcEEEE-Ec--CCceEEEec-CCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 888888 87 465533333 356677888887 5888888888898999987
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=149.86 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=99.5
Q ss_pred CceEEE-EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 401 FETKQV-FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 401 ~~~~~v-~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
+..+++ .+.+.||.+|.+.++.|.+ .+.|+||++||...... .|.. ....|.++||.|+++|+||.|.....
T Consensus 32 ~~~~~~~~~~~~dg~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~ 104 (342)
T 3hju_A 32 IPYQDLPHLVNADGQYLFCRYWKPTG----TPKALIFVSHGAGEHSG--RYEE-LARMLMGLDLLVFAHDHVGHGQSEGE 104 (342)
T ss_dssp CBTTSSCEEECTTSCEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGHH-HHHHHHTTTEEEEEECCTTSTTSCSS
T ss_pred cccccCceEEccCCeEEEEEEeCCCC----CCCcEEEEECCCCcccc--hHHH-HHHHHHhCCCeEEEEcCCCCcCCCCc
Confidence 334444 6778899999999998764 56799999999865443 3433 45667767999999999998754321
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...........+|+.+.++++... .+..+++++|+|+||.+++.++.++|++++++|...+
T Consensus 105 ---~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 165 (342)
T 3hju_A 105 ---RMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISP 165 (342)
T ss_dssp ---TTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESC
T ss_pred ---CCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECc
Confidence 011112223467888888888876 4456899999999999999999999999999999887
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-13 Score=163.75 Aligned_cols=264 Identities=11% Similarity=0.056 Sum_probs=156.5
Q ss_pred ECCCCce--EEEEEEEeCCCCCCCCCcEEEEEcC--CCCCC---------C-----------------------------
Q psy1288 409 PSKDGTK--IPMFILSRKGAQLDGNNPCILYGYG--GFAVS---------L----------------------------- 446 (1012)
Q Consensus 409 ~s~DG~~--i~~~l~~p~~~~~~~~~P~vv~~hG--g~~~~---------~----------------------------- 446 (1012)
+..||.+ |.+.+++|++ .++.|+||..|+ +.... .
T Consensus 179 ~~~DG~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 255 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccccc
Confidence 3579999 9999999987 368899996654 22110 0
Q ss_pred ------CCCcC----hhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC---------
Q psy1288 447 ------QPGFS----VTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG--------- 507 (1012)
Q Consensus 447 ------~~~~~----~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~--------- 507 (1012)
...|. .....+++++||+|+.+|+||.|+.+..+ ........+|+.++++||..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~-----~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 256 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcC-----CCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 01121 12235667789999999999988654332 1122345789999999998531
Q ss_pred -----CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccc
Q psy1288 508 -----YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKI 582 (1012)
Q Consensus 508 -----~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 582 (1012)
..+..+|+++|+|+||++++.++...|+.++++|..++ ++|+..++...+... . ...++..
T Consensus 331 ~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~---~~d~~~~~~~~g~~~-------~--~~g~~~~-- 396 (763)
T 1lns_A 331 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAG---ISSWYNYYRENGLVR-------S--PGGFPGE-- 396 (763)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESC---CSBHHHHHBSSSSBC-------C--CTTCTTC--
T ss_pred ccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecc---cccHHHHhhhcchhh-------h--cccCCch--
Confidence 12457999999999999999999988999999999988 554322111000000 0 0000000
Q ss_pred cCCCCcchhhhhhhhhhhccccc-cc-------------ccccccc--CCCCChHHHHHHHcCCcccCCCCCCcccCCCC
Q psy1288 583 EGKLPLTQVVHKVLDMLKFNKFT-IG-------------YFWESDY--GSPANSSQFEYLLGYSPLHNIQGPDELKGKQY 646 (1012)
Q Consensus 583 ~~~~plt~~~~~~~d~~~~~~~~-~g-------------~~~~~~~--g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~ 646 (1012)
.+.. +.. ..+.... .+ ..|.... ..+.. .+.+...++...+. ++++
T Consensus 397 ----~~~~----l~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~~s~~~~l~------~I~~ 458 (763)
T 1lns_A 397 ----DLDV----LAA-LTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDY---NQFWHDRNYLINTD------KVKA 458 (763)
T ss_dssp ----CHHH----HHH-HHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCC---CHHHHTTBGGGGGG------GCCS
T ss_pred ----hhhH----HhH-HHHhhhcCcchhhhHHHHHHHHHHHHHhhhhhccCch---hHHhhccChhhHhh------cCCC
Confidence 0000 000 0000000 00 0000000 11111 12344556665555 7888
Q ss_pred CcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCCC
Q psy1288 647 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 647 P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
| +|++||..|..|++.++.+++++|.. +.+..+.+ ++++|+...... .......+.+||+++|+..
T Consensus 459 P-vLii~G~~D~~vp~~~a~~l~~al~~--------~~~~~l~i-~~~gH~~~~~~~-~~~~~~~i~~Ffd~~Lkg~ 524 (763)
T 1lns_A 459 D-VLIVHGLQDWNVTPEQAYNFWKALPE--------GHAKHAFL-HRGAHIYMNSWQ-SIDFSETINAYFVAKLLDR 524 (763)
T ss_dssp E-EEEEEETTCCSSCTHHHHHHHHHSCT--------TCCEEEEE-ESCSSCCCTTBS-SCCHHHHHHHHHHHHHTTC
T ss_pred C-EEEEEECCCCCCChHHHHHHHHhhcc--------CCCeEEEE-eCCcccCccccc-hHHHHHHHHHHHHHHhcCC
Confidence 9 99999999999999999988888753 22344544 567898643221 1234567789999998753
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-13 Score=143.08 Aligned_cols=198 Identities=11% Similarity=0.046 Sum_probs=135.1
Q ss_pred EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCC-CCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhh
Q psy1288 407 FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAV-SLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGR 485 (1012)
Q Consensus 407 ~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 485 (1012)
.++-.+|..+.+.++.|.+ ++.|+||++|||... .....|.. ....+.++|+.|+.+|+||.++...
T Consensus 42 ~i~~~~~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~~~~~~~~~------- 109 (262)
T 2pbl_A 42 NLSYGEGDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSH-LAVGALSKGWAVAMPSYELCPEVRI------- 109 (262)
T ss_dssp EEESSSSTTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGG-GGHHHHHTTEEEEEECCCCTTTSCH-------
T ss_pred ccccCCCCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHH-HHHHHHhCCCEEEEeCCCCCCCCCh-------
Confidence 3444566677778887765 567999999997522 22223433 3455666799999999998765321
Q ss_pred cCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC------CCceeEEEEccCCCccccCcceeeee
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR------PDLFGAAIVQVGNPEISDCGRWLIVH 559 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~~i~d~~~~~~~~ 559 (1012)
....+|+.++++++..+.. ++++++|+|+||.+++.++.++ |++++++|+..| +.++
T Consensus 110 ----~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~---~~~~------- 172 (262)
T 2pbl_A 110 ----SEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISP---LSDL------- 172 (262)
T ss_dssp ----HHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESC---CCCC-------
T ss_pred ----HHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecC---ccCc-------
Confidence 1235788888999887643 7899999999999999998877 788999999988 2221
Q ss_pred cccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCC
Q psy1288 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPD 639 (1012)
Q Consensus 560 ~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~ 639 (1012)
..+.. .. +...+.. . .+.+...+|...+.
T Consensus 173 ---------------~~~~~-----------------~~-----------~~~~~~~--~---~~~~~~~~~~~~~~--- 201 (262)
T 2pbl_A 173 ---------------RPLLR-----------------TS-----------MNEKFKM--D---ADAAIAESPVEMQN--- 201 (262)
T ss_dssp ---------------GGGGG-----------------ST-----------THHHHCC--C---HHHHHHTCGGGCCC---
T ss_pred ---------------hHHHh-----------------hh-----------hhhhhCC--C---HHHHHhcCcccccC---
Confidence 00000 00 0000110 1 12345567766655
Q ss_pred cccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 640 ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 640 ~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
..+.| +|++||.+|..+++.++.++...+. +.+.++++++|....
T Consensus 202 ---~~~~P-~lii~G~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~H~~~~ 246 (262)
T 2pbl_A 202 ---RYDAK-VTVWVGGAERPAFLDQAIWLVEAWD------------ADHVIAFEKHHFNVI 246 (262)
T ss_dssp ---CCSCE-EEEEEETTSCHHHHHHHHHHHHHHT------------CEEEEETTCCTTTTT
T ss_pred ---CCCCC-EEEEEeCCCCcccHHHHHHHHHHhC------------CeEEEeCCCCcchHH
Confidence 56777 9999999999999888887777654 368899999998654
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=140.47 Aligned_cols=185 Identities=12% Similarity=-0.031 Sum_probs=124.9
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh------hhcCC----CcchHhHHHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG------GRLLN----KQNVFDDFQC 498 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~------~~~~~----~~~~~~D~~a 498 (1012)
+.+.| ||++||..+... .|.. ....+. .++.|+.+|.++....+..|... ..... .....+++.+
T Consensus 14 ~~~~p-vv~lHG~g~~~~--~~~~-~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~ 88 (209)
T 3og9_A 14 KDLAP-LLLLHSTGGDEH--QLVE-IAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTD 88 (209)
T ss_dssp TTSCC-EEEECCTTCCTT--TTHH-HHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEeCCCCCHH--HHHH-HHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHH
Confidence 35678 999999754332 3333 345565 59999999955322222333220 00000 0122344555
Q ss_pred HHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCC
Q psy1288 499 AAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIP 578 (1012)
Q Consensus 499 ~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~ 578 (1012)
.++.+.....+++++++++|+|+||.+++.++.++|+++++++..++ +..
T Consensus 89 ~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~-------------------------~~~----- 138 (209)
T 3og9_A 89 EVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHG-------------------------MQL----- 138 (209)
T ss_dssp HHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESC-------------------------CCC-----
T ss_pred HHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECC-------------------------CCC-----
Confidence 55555555556889999999999999999999999999999999887 000
Q ss_pred cccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCC
Q psy1288 579 DRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDD 658 (1012)
Q Consensus 579 ~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~ 658 (1012)
. . +..... ..+.| +|++||..|+
T Consensus 139 ---------~-----------------------~------------------~~~~~~------~~~~p-~li~~G~~D~ 161 (209)
T 3og9_A 139 ---------E-----------------------D------------------FEQTVQ------LDDKH-VFLSYAPNDM 161 (209)
T ss_dssp ---------C-----------------------C------------------CCCCCC------CTTCE-EEEEECTTCS
T ss_pred ---------C-----------------------c------------------cccccc------ccCCC-EEEEcCCCCC
Confidence 0 0 000011 24556 9999999999
Q ss_pred CCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 659 RVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 659 ~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
.+++.++.++.+.|+.+ +.++.+.+++ ++|++.. +...++.+||.+.
T Consensus 162 ~v~~~~~~~~~~~l~~~-------~~~~~~~~~~-~gH~~~~------~~~~~~~~~l~~~ 208 (209)
T 3og9_A 162 IVPQKNFGDLKGDLEDS-------GCQLEIYESS-LGHQLTQ------EEVLAAKKWLTET 208 (209)
T ss_dssp SSCHHHHHHHHHHHHHT-------TCEEEEEECS-STTSCCH------HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc-------CCceEEEEcC-CCCcCCH------HHHHHHHHHHHhh
Confidence 99999999999999988 8889999988 7998742 4556677888764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-12 Score=144.89 Aligned_cols=259 Identities=10% Similarity=-0.041 Sum_probs=153.3
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|..... +..+||+.+..+++.+++++.. ......+.|||||++|+|.... .+||++
T Consensus 41 ~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~lt~~~------~~~~~~~~~spdg~~l~~~~~~-----~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFD--GPWNYYLLDLNTQVATQLTEGR------GDNTFGGFLSPDDDALFYVKDG-----RNLMRV 107 (388)
T ss_dssp CCBCTTSCEEEEEECTT--SSCEEEEEETTTCEEEECCCSS------CBCSSSCEECTTSSEEEEEETT-----TEEEEE
T ss_pred ccCCCCCCEEEEEEcCC--CCceEEEEeCCCCceEEeeeCC------CCCccceEEcCCCCEEEEEeCC-----CeEEEE
Confidence 45669999999998744 3468999999888888888622 1122357899999999998853 279999
Q ss_pred ECCCCceeceeecc-eeeeee--EEeeCCCeEEEEecCCCCC---cc-------cCCCCCceEEEEeeccc---------
Q psy1288 189 DVATGKEYPEVLHR-LKFVSI--AWTHDHKGVFYSNQEPKSK---SK-------KHSKKNRSSAYHLTVNV--------- 246 (1012)
Q Consensus 189 dl~tg~~~~~t~~~-~~~~~~--~WSpDG~~l~y~~~~~~~~---g~-------~~~~~~~~l~~~~~~~~--------- 246 (1012)
|+++|+.+.+.... ...... .++|||+.|+......... .. ........++.......
T Consensus 108 d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 187 (388)
T 3pe7_A 108 DLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN 187 (388)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES
T ss_pred ECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC
Confidence 99999876543222 212223 3489999887654221100 00 00011122222221100
Q ss_pred cceeeeeeec-CCCEEEEEECCCC--CCceEEEEeCCCCcccCcEEeeccCCCceeee-eEEecCCEEEEEEEcCceE--
Q psy1288 247 APITSQYITN-EGPQFVFKTNKDA--PNYRLITIDFDNFAESNWKTLIEENKDDVLDW-ATCVANDKLILSYIHHVKN-- 320 (1012)
Q Consensus 247 ~~i~~~~~s~-dg~~l~~~tn~~~--~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~-- 320 (1012)
..+....|+| ||++|++..+... ...+|+.+++++.. .+.+........... ....+++.|++....++..
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcc
Confidence 1233556999 9999999987432 25689999987654 345554432222222 3334666776766655543
Q ss_pred EEEEEecCCCceeeeecCCce-EE----EeecccccCcEEEEEecC-----CCCCcEEEEEeCCCCCCCCCCcceEEEEe
Q psy1288 321 VMHLHDLASGKHLYTFPLDVG-TI----VGFSGKKKYSEIFYSFMS-----FLQPTIIFHCNIPARVDPNSKLETSIFRE 390 (1012)
Q Consensus 321 ~l~~~dl~~G~~~~~l~~~~~-~v----~~~~~spdg~~l~~~~ss-----~~~p~~l~~~d~~~~~~~~g~~~~~~l~~ 390 (1012)
.|+++++++|+.......+.. .. ....|+|||+.|++.... ......||++|+ +++ +.+.++.
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~-----~~~--~~~~l~~ 337 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM-----KNG--TQHRVAR 337 (388)
T ss_dssp EEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET-----TTT--EEEEEEE
T ss_pred eEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec-----cCC--ceEEecc
Confidence 599999987765333233321 11 123589999998887643 134568999999 455 4555655
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=158.95 Aligned_cols=138 Identities=15% Similarity=0.124 Sum_probs=109.3
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCC---------------------cChhHHHHHHh
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG---------------------FSVTKIVFLRD 460 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~---------------------~~~~~~~~l~~ 460 (1012)
..+.+.+++.||.+|.+.++.|++ .++.|+||..||..... .+. |.....+++++
T Consensus 40 ~~~~v~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~pyg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~ 115 (560)
T 3iii_A 40 MEKDGTVEMRDGEKLYINIFRPNK---DGKFPVVMSADTYGKDN-KPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVP 115 (560)
T ss_dssp EEEEEEEECTTSCEEEEEEEECSS---SSCEEEEEEEESSCTTC-CCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHGG
T ss_pred EEEEEEEECCCCcEEEEEEEecCC---CCCCCEEEEecCCCCCc-ccccccccccccccccccccccccccCCCHHHHHh
Confidence 457788999999999999999986 47899999988743321 111 10112456777
Q ss_pred CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEE
Q psy1288 461 FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAA 540 (1012)
Q Consensus 461 ~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 540 (1012)
+||+|+.+|+||.|+.+..+. .......+|+.++++|+.++++.+ .+|+++|+|+||++++.++...|+.++|+
T Consensus 116 ~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~ai 189 (560)
T 3iii_A 116 NDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAM 189 (560)
T ss_dssp GTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEE
T ss_pred CCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEE
Confidence 899999999999998765543 123356789999999999988777 89999999999999999999889999999
Q ss_pred EEccCCCccccC
Q psy1288 541 IVQVGNPEISDC 552 (1012)
Q Consensus 541 v~~~~~~~i~d~ 552 (1012)
|..++ ++|+
T Consensus 190 v~~~~---~~d~ 198 (560)
T 3iii_A 190 IPWEG---LNDM 198 (560)
T ss_dssp EEESC---CCBH
T ss_pred EecCC---cccc
Confidence 99999 6663
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=147.79 Aligned_cols=254 Identities=14% Similarity=0.093 Sum_probs=151.3
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChh--HHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT--KIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
..+.+.+.|+ .|.+|.++ +.|.. ++.|+|+++||+........|... ..+++++.|++|+.+|.++++.+.
T Consensus 8 ~v~~~~~~S~~~~~~i~v~-~~p~~----~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~- 81 (304)
T 1sfr_A 8 PVEYLQVPSPSMGRDIKVQ-FQSGG----ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYS- 81 (304)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS----TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTC-
T ss_pred eEEEEEEECccCCCceEEE-ECCCC----CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCcccc-
Confidence 3456667775 46677766 44432 568999999998432222233221 235667679999999997754331
Q ss_pred hHHhhhhcCC--CcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcc
Q psy1288 479 RWHDGGRLLN--KQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGR 554 (1012)
Q Consensus 479 ~~~~~~~~~~--~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~ 554 (1012)
.|........ ....+.+++ ..+.++.++-.+++++++|+|+|+||++++.++.++|++|+++++.+| ..++
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg---~~~~-- 156 (304)
T 1sfr_A 82 DWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSG---LLDP-- 156 (304)
T ss_dssp BCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC---CSCT--
T ss_pred ccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECC---ccCc--
Confidence 1111000000 012233432 223333332236778999999999999999999999999999999988 1110
Q ss_pred eeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccC
Q psy1288 555 WLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHN 634 (1012)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~ 634 (1012)
... . .+ ... ...+.... +..+...||.+.. ..+...+|...
T Consensus 157 --------------------~~~-~------~~--~~~--~~~~~~~~----~~~~~~~~g~~~~----~~~~~~~p~~~ 197 (304)
T 1sfr_A 157 --------------------SQA-M------GP--TLI--GLAMGDAG----GYKASDMWGPKED----PAWQRNDPLLN 197 (304)
T ss_dssp --------------------TST-T------HH--HHH--HHHHHHTT----SCCHHHHHCSTTS----THHHHSCTTTT
T ss_pred --------------------ccc-c------hh--hhh--hHhhhhcc----ccchHHhcCCcch----hhhHhcCHHHH
Confidence 000 0 00 000 00000000 0001123444432 23566677655
Q ss_pred CCCCCcccCC--CCCcEEEEeeCCCC--------------CCChHHHHHHHHHHHhhhccCCCCC-CcEEEEEeCCCCCC
Q psy1288 635 IQGPDELKGK--QYPATLLMTADHDD--------------RVSPVHSLKFAATLQEKLRDYPHQT-NPLLIRIETKAGHG 697 (1012)
Q Consensus 635 ~~~p~~~~~~--~~P~vLiihG~~D~--------------~v~~~~s~~~~~~L~~~~~~~~~~~-~~~~l~~~p~~gHg 697 (1012)
+. +. +-++++++||..|+ .+++.++.++...|+++ + .++.+.++++++|.
T Consensus 198 ~~------~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~-------G~~~v~~~~~~~g~H~ 264 (304)
T 1sfr_A 198 VG------KLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAG-------GGHNGVFDFPDSGTHS 264 (304)
T ss_dssp HH------HHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCSEEEECCSCCCSS
T ss_pred HH------HhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHHHHHHHHHHhC-------CCCceEEEecCCCccC
Confidence 43 22 22349999999998 66788899999999988 8 89999999888997
Q ss_pred CCCccccchhhhhHHHHHHHHhCCC
Q psy1288 698 GGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 698 ~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+.. ....+.+.+.||.+.++.
T Consensus 265 ~~~----w~~~l~~~l~~l~~~l~~ 285 (304)
T 1sfr_A 265 WEY----WGAQLNAMKPDLQRALGA 285 (304)
T ss_dssp HHH----HHHHHHHTHHHHHHHHTC
T ss_pred HHH----HHHHHHHHHHHHHHhcCC
Confidence 532 124556778899988765
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=142.26 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=94.4
Q ss_pred EEEEE---CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 405 QVFYP---SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 405 ~v~~~---s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
.+.+. +.+|..+.++++.|.+. ..+.|+||++||+..... .|...+...+.++|+.|+.+|+|+.+..+..|+
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~~~ 101 (304)
T 3d0k_A 26 AIPYLDDDRNADRPFTLNTYRPYGY--TPDRPVVVVQHGVLRNGA--DYRDFWIPAADRHKLLIVAPTFSDEIWPGVESY 101 (304)
T ss_dssp EEEECC---CTTCCEEEEEEECTTC--CTTSCEEEEECCTTCCHH--HHHHHTHHHHHHHTCEEEEEECCTTTSCHHHHT
T ss_pred eEEecccCCCCCceEEEEEEeCCCC--CCCCcEEEEeCCCCCCHH--HHHHHHHHHHHHCCcEEEEeCCccccCCCcccc
Confidence 34455 56888999999999763 246799999999865432 231223455666799999999996532111122
Q ss_pred hhhh--c------CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC-ceeEEEEcc
Q psy1288 482 DGGR--L------LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD-LFGAAIVQV 544 (1012)
Q Consensus 482 ~~~~--~------~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~ 544 (1012)
..+. + ......++|+.++++++.+...+++++|+++|+|+||.+++.++.++|+ .++++|...
T Consensus 102 ~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~ 173 (304)
T 3d0k_A 102 NNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAAN 173 (304)
T ss_dssp TTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEES
T ss_pred ccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEec
Confidence 1111 0 0112345788889999998777889999999999999999999998885 677777554
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-12 Score=139.28 Aligned_cols=132 Identities=12% Similarity=0.056 Sum_probs=91.6
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCC---cC-hhHHHHHHhC----CeEEEEEcCCCC
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG---FS-VTKIVFLRDF----NGIYAIPNIRGG 473 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~---~~-~~~~~~l~~~----G~~v~~~d~RG~ 473 (1012)
..+.+.+.|.+| .+.++++.|+++...+++|+|+++||+.+...... .. ......+.++ +++|+.+|.+|+
T Consensus 40 ~~~~~~~~s~~~-~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~~ 118 (297)
T 1gkl_A 40 RIVKETYTGING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGG 118 (297)
T ss_dssp EEEEEEEEETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCST
T ss_pred eEEEEEEEcCCC-EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcCC
Confidence 456788888886 89999999998766678999999999865432111 11 1223334444 599999999876
Q ss_pred CCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc-CC-----------CCCCcEEEEecChHHHHHHHHHhhCCCceeEEE
Q psy1288 474 GEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS-GY-----------TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541 (1012)
Q Consensus 474 g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~-~~-----------~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 541 (1012)
...+..|.+ ...+|+. .++.+. .. .++.+++|+|+|+||++++.++.++|++|++++
T Consensus 119 ~~~~~~~~~--------~~~~~l~---~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v 187 (297)
T 1gkl_A 119 NCTAQNFYQ--------EFRQNVI---PFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFM 187 (297)
T ss_dssp TCCTTTHHH--------HHHHTHH---HHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccchHHHHH--------HHHHHHH---HHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheee
Confidence 433322211 0122333 333333 21 367889999999999999999999999999999
Q ss_pred EccC
Q psy1288 542 VQVG 545 (1012)
Q Consensus 542 ~~~~ 545 (1012)
+.+|
T Consensus 188 ~~sg 191 (297)
T 1gkl_A 188 PLSG 191 (297)
T ss_dssp EESC
T ss_pred Eecc
Confidence 9988
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-11 Score=134.72 Aligned_cols=127 Identities=13% Similarity=0.105 Sum_probs=94.4
Q ss_pred EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 407 FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 407 ~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
.+.+.||.+|.+.++.|.+ .+.|+||++||...... .|.. ....|.++||.|+.+|+||.|...... ...
T Consensus 21 ~~~~~~g~~l~~~~~~~~~----~~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~~~---~~~ 90 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG----TPKALIFVSHGAGEHSG--RYEE-LARMLMGLDLLVFAHDHVGHGQSEGER---MVV 90 (303)
T ss_dssp EEECTTSCEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGHH-HHHHHHHTTEEEEEECCTTSTTSCSST---TCC
T ss_pred eEecCCCeEEEEEEeccCC----CCCeEEEEECCCCchhh--HHHH-HHHHHHhCCCcEEEeCCCCCCCCCCCC---CCC
Confidence 5678899999999987764 45799999999764432 3433 355666679999999999987653211 011
Q ss_pred CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......+|+.+.++++... .+..++.++|+|+||.+++.++.++|+++++++...+
T Consensus 91 ~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 147 (303)
T 3pe6_A 91 SDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISP 147 (303)
T ss_dssp SSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECc
Confidence 11223356777788877765 2356899999999999999999999999999999877
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=137.90 Aligned_cols=230 Identities=12% Similarity=0.144 Sum_probs=132.2
Q ss_pred EEEEE-ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 404 KQVFY-PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 404 ~~v~~-~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
+.+.+ .+.||.+|.+....+.+ .+.|+||++||..+...... ......++.++||.|+.+|+||.|........
T Consensus 12 ~~~~~~~~~~g~~l~~~~~~~~~----~~~~~vv~~HG~~~~~~~~~-~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~ 86 (270)
T 3llc_A 12 HAITVGQGSDARSIAALVRAPAQ----DERPTCIWLGGYRSDMTGTK-ALEMDDLAASLGVGAIRFDYSGHGASGGAFRD 86 (270)
T ss_dssp EEEEESSGGGCEEEEEEEECCSS----TTSCEEEEECCTTCCTTSHH-HHHHHHHHHHHTCEEEEECCTTSTTCCSCGGG
T ss_pred ceEEEeeccCcceEEEEeccCCC----CCCCeEEEECCCccccccch-HHHHHHHHHhCCCcEEEeccccCCCCCCcccc
Confidence 33444 55789999877665432 23689999999764332111 12245566567999999999998765332211
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhh---CC---CceeEEEEccCCCccccCccee
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQ---RP---DLFGAAIVQVGNPEISDCGRWL 556 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p---~~f~a~v~~~~~~~i~d~~~~~ 556 (1012)
.......+|+.+.++++ ..+++.++|+|+||.+++.++.+ +| +.++++|...+ ..++...
T Consensus 87 ----~~~~~~~~d~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~---~~~~~~~- 152 (270)
T 3llc_A 87 ----GTISRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAP---APDFTSD- 152 (270)
T ss_dssp ----CCHHHHHHHHHHHHHHH------CCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESC---CTTHHHH-
T ss_pred ----ccHHHHHHHHHHHHHHh------ccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecC---cccchhh-
Confidence 01111133444444443 26789999999999999999999 99 89999999888 1111000
Q ss_pred eeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCC-C--CChHHHHHHHcCCccc
Q psy1288 557 IVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGS-P--ANSSQFEYLLGYSPLH 633 (1012)
Q Consensus 557 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~-p--~~~~~~~~~~~~sP~~ 633 (1012)
+. ...+ .... ...+......... ..+.. + ......+.........
T Consensus 153 -----------~~----~~~~-----------~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (270)
T 3llc_A 153 -----------LI----EPLL-----------GDRE--RAELAENGYFEEV----SEYSPEPNIFTRALMEDGRANRVMA 200 (270)
T ss_dssp -----------TT----GGGC-----------CHHH--HHHHHHHSEEEEC----CTTCSSCEEEEHHHHHHHHHTCCTT
T ss_pred -----------hh----hhhh-----------hhhh--hhhhhccCcccCh----hhcccchhHHHHHHHhhhhhhhhhh
Confidence 00 0000 0000 0000000000000 01110 1 1122333344443344
Q ss_pred CCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 634 NIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 634 ~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
.+. .+++| +|++||..|..+++..+.++...+. +..+.+.+++++||.+..
T Consensus 201 ~~~------~~~~P-~l~i~g~~D~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~gH~~~~ 251 (270)
T 3llc_A 201 GMI------DTGCP-VHILQGMADPDVPYQHALKLVEHLP---------ADDVVLTLVRDGDHRLSR 251 (270)
T ss_dssp SCC------CCCSC-EEEEEETTCSSSCHHHHHHHHHTSC---------SSSEEEEEETTCCSSCCS
T ss_pred hhh------cCCCC-EEEEecCCCCCCCHHHHHHHHHhcC---------CCCeeEEEeCCCcccccc
Confidence 444 57788 9999999999999888776665442 234789999999997543
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=148.49 Aligned_cols=231 Identities=12% Similarity=0.027 Sum_probs=141.8
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCC---eEEEEEcCCCCCCCc
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFN---GIYAIPNIRGGGEYG 477 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G---~~v~~~d~RG~g~~g 477 (1012)
..+.+.+.|. +|..+.++++.|+++...+++|+|+++||+........+......+.++.| ++|+.+++++++.++
T Consensus 17 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~~ 96 (275)
T 2qm0_A 17 NTEQWKMYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFS 96 (275)
T ss_dssp TEEEEEEECTTTCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSCC
T ss_pred CceEEEEEecCCCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcCc
Confidence 4677888887 799999999999998767889999999997421100001000001123357 999999999865443
Q ss_pred hh--HHhhhhc----------------C-CCcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc
Q psy1288 478 ER--WHDGGRL----------------L-NKQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL 536 (1012)
Q Consensus 478 ~~--~~~~~~~----------------~-~~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 536 (1012)
.. ..+.... . .+...+.+++ ..+.++.++-.+++++++++|+|+||++++.++.++|++
T Consensus 97 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~~ 176 (275)
T 2qm0_A 97 GEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNA 176 (275)
T ss_dssp HHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGGG
T ss_pred ccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCchh
Confidence 21 0111100 0 0111333433 223344444446889999999999999999999999999
Q ss_pred eeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCC
Q psy1288 537 FGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGS 616 (1012)
Q Consensus 537 f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~ 616 (1012)
|+++++.+| ...|. + ... ...
T Consensus 177 f~~~~~~s~---~~~~~-------------------~----------------------~~~-------------~~~-- 197 (275)
T 2qm0_A 177 FQNYFISSP---SIWWN-------------------N----------------------KSV-------------LEK-- 197 (275)
T ss_dssp CSEEEEESC---CTTHH-------------------H----------------------HGG-------------GGG--
T ss_pred hceeEEeCc---eeeeC-------------------h----------------------HHH-------------HHH--
Confidence 999999988 11000 0 000 000
Q ss_pred CCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCC
Q psy1288 617 PANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 696 (1012)
Q Consensus 617 p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gH 696 (1012)
. +.+ +...+ .. ....| ++++||..|..+++.++.+++..|.+. ...+.++.+.++|+++|
T Consensus 198 ~---~~~--~~~~~----~~------~~~~~-~~l~~G~~D~~~~~~~~~~~~~~L~~~----~~~g~~~~~~~~~g~~H 257 (275)
T 2qm0_A 198 E---ENL--IIELN----NA------KFETG-VFLTVGSLEREHMVVGANELSERLLQV----NHDKLKFKFYEAEGENH 257 (275)
T ss_dssp T---THH--HHHHH----TC------SSCEE-EEEEEETTSCHHHHHHHHHHHHHHHHC----CCTTEEEEEEEETTCCT
T ss_pred H---HHH--Hhhhc----cc------CCCce-EEEEeCCcccchhhHHHHHHHHHHHhc----ccCCceEEEEECCCCCc
Confidence 0 000 00000 11 23334 999999999988899999999999531 11178899999999999
Q ss_pred CCCCccccchhhhhHHHHHH
Q psy1288 697 GGGKPTTKQFPLTIPVIYFY 716 (1012)
Q Consensus 697 g~~~~~~~~~~~~~~~~~fl 716 (1012)
+..- ...+.+.+.|+
T Consensus 258 ~~~~-----~~~l~~~l~~l 272 (275)
T 2qm0_A 258 ASVV-----PTSLSKGLRFI 272 (275)
T ss_dssp TTHH-----HHHHHHHHHHH
T ss_pred cccH-----HHHHHHHHHHH
Confidence 6421 23345555665
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-12 Score=134.03 Aligned_cols=195 Identities=13% Similarity=0.077 Sum_probs=129.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhC-----CeEEEEEcCCCC------CCCchhHHhhh----hcCCCcchHh
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDF-----NGIYAIPNIRGG------GEYGERWHDGG----RLLNKQNVFD 494 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~-----G~~v~~~d~RG~------g~~g~~~~~~~----~~~~~~~~~~ 494 (1012)
.+.|+||++||..+... .|.. +...+..+ |+.|+.++.++. +..+..|.+.. ........++
T Consensus 21 ~~~p~vv~lHG~g~~~~--~~~~-~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 97 (239)
T 3u0v_A 21 RHSASLIFLHGSGDSGQ--GLRM-WIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID 97 (239)
T ss_dssp CCCEEEEEECCTTCCHH--HHHH-HHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred CCCcEEEEEecCCCchh--hHHH-HHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence 56799999999654321 2222 23334433 689999887542 22223333210 0111112344
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccc
Q psy1288 495 DFQCAAEYLIAS---GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHF 571 (1012)
Q Consensus 495 D~~a~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~ 571 (1012)
++...+..+++. ..++.++++++|+|+||.+++.++.++|+.++++++.++ +
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~-------------------------~ 152 (239)
T 3u0v_A 98 VMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSS-------------------------F 152 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESC-------------------------C
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecC-------------------------C
Confidence 444444444433 346889999999999999999999999999999999888 1
Q ss_pred cccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEE
Q psy1288 572 CDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLL 651 (1012)
Q Consensus 572 ~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLi 651 (1012)
.+.. . .....+. . . ..+.|++|+
T Consensus 153 ~~~~-------------------------------------------~-~~~~~~~------~-~------~~~~pp~li 175 (239)
T 3u0v_A 153 LNKA-------------------------------------------S-AVYQALQ------K-S------NGVLPELFQ 175 (239)
T ss_dssp CCTT-------------------------------------------C-HHHHHHH------H-C------CSCCCCEEE
T ss_pred CCch-------------------------------------------h-HHHHHHH------h-h------ccCCCCEEE
Confidence 0000 0 0000010 0 1 345667999
Q ss_pred EeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 652 MTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 652 ihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+||..|..+++.++.++...|+.+ +..+.+.++++++|++. .+...++.+|+.+.+..
T Consensus 176 ~~G~~D~~v~~~~~~~~~~~l~~~-------~~~~~~~~~~g~~H~~~------~~~~~~~~~~l~~~l~~ 233 (239)
T 3u0v_A 176 CHGTADELVLHSWAEETNSMLKSL-------GVTTKFHSFPNVYHELS------KTELDILKLWILTKLPG 233 (239)
T ss_dssp EEETTCSSSCHHHHHHHHHHHHHT-------TCCEEEEEETTCCSSCC------HHHHHHHHHHHHHHCC-
T ss_pred EeeCCCCccCHHHHHHHHHHHHHc-------CCcEEEEEeCCCCCcCC------HHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988 78899999999999986 24567788999998754
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=148.41 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=96.3
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
..+.+.++. +|..|+++++.|.+ .++.|+||++||..+... .+.......+.++||.|+.+|+||.|.....
T Consensus 167 ~~~~v~i~~-~g~~l~~~~~~P~~---~~~~P~vv~~hG~~~~~~--~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~-- 238 (415)
T 3mve_A 167 IIKQLEIPF-EKGKITAHLHLTNT---DKPHPVVIVSAGLDSLQT--DMWRLFRDHLAKHDIAMLTVDMPSVGYSSKY-- 238 (415)
T ss_dssp EEEEEEEEC-SSSEEEEEEEESCS---SSCEEEEEEECCTTSCGG--GGHHHHHHTTGGGTCEEEEECCTTSGGGTTS--
T ss_pred CeEEEEEEE-CCEEEEEEEEecCC---CCCCCEEEEECCCCccHH--HHHHHHHHHHHhCCCEEEEECCCCCCCCCCC--
Confidence 467777777 78899999999876 467899999999754321 1222233556567999999999997743211
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...........++++++.....+++++|+++|+|+||++++.++..+|++++++|+..|
T Consensus 239 -----~~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~ 297 (415)
T 3mve_A 239 -----PLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGA 297 (415)
T ss_dssp -----CCCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESC
T ss_pred -----CCCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECC
Confidence 01111112334567777777778889999999999999999999988999999999887
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=141.45 Aligned_cols=241 Identities=9% Similarity=-0.010 Sum_probs=142.1
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
...+|||++++|....+ +...||+.+..+++.++++... ......+.|||||++|+|+.... +||++
T Consensus 41 ~~~SpdG~~l~~~~~~~--g~~~l~~~d~~~~~~~~l~~~~------~~~~~~~~~spdg~~l~~~~~~~-----~l~~~ 107 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFD--GNRNYYLLNLETQQAVQLTEGK------GDNTFGGFISTDERAFFYVKNEL-----NLMKV 107 (396)
T ss_dssp CCBCTTSCEEEEEECTT--SSCEEEEEETTTTEEEECCCSS------CBCTTTCEECTTSSEEEEEETTT-----EEEEE
T ss_pred CcCCCCCCEEEEEEecC--CCceEEEEECCCCcEEEeecCC------CCccccceECCCCCEEEEEEcCC-----cEEEE
Confidence 44569999999998764 3457899998888777776522 11123478999999999987643 79999
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCC-----------CCCcc----cC---CCCCceEEEEeecc-----
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEP-----------KSKSK----KH---SKKNRSSAYHLTVN----- 245 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~-----------~~~g~----~~---~~~~~~l~~~~~~~----- 245 (1012)
|+++++.+++..... .|+|||+.|+|..... ...+. .. ......++......
T Consensus 108 d~~~~~~~~~~~~~~-----~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 108 DLETLEEQVIYTVDE-----EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp ETTTCCEEEEEECCT-----TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE
T ss_pred ECCCCCcEEEEeccc-----ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe
Confidence 999998765443221 1666666666542110 00000 00 01111222111100
Q ss_pred ----ccceeeeeeec-CCCEEEEEECCCC--CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcC
Q psy1288 246 ----VAPITSQYITN-EGPQFVFKTNKDA--PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHH 317 (1012)
Q Consensus 246 ----~~~i~~~~~s~-dg~~l~~~tn~~~--~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 317 (1012)
...+....|+| ||++|++.++... ...+|+.+++++.. ++.+........+....+ .+++.|++....+
T Consensus 183 ~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 183 IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 02233456999 8888999886321 12689999987654 455554322222333333 4556677776665
Q ss_pred ceE--EEEEEecCCCceeeeecCCceEEEeecccc-cCcEEEEEecC------------CCCCcEEEEEeC
Q psy1288 318 VKN--VMHLHDLASGKHLYTFPLDVGTIVGFSGKK-KYSEIFYSFMS------------FLQPTIIFHCNI 373 (1012)
Q Consensus 318 g~~--~l~~~dl~~G~~~~~l~~~~~~v~~~~~sp-dg~~l~~~~ss------------~~~p~~l~~~d~ 373 (1012)
+.. .|+++++.+|+.......+.. . +.|+| ||+.+++..+. ......||++|+
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred CCccceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 554 499999977765333333322 2 67888 99976664432 012268999998
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-12 Score=143.34 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=136.7
Q ss_pred EEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHh
Q psy1288 416 IPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFD 494 (1012)
Q Consensus 416 i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 494 (1012)
+.++++.|.+ ++.|+||++|||...... ..|......+..+.|+.|+.+|+||.++... ...++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~-----------~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHI-----------DDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCH-----------HHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCc-----------hHHHH
Confidence 5556677764 456899999998533221 2222222233334599999999998764321 12367
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc----eeEEEEccCCCccccCcceeeeecccccccCccc
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL----FGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFH 570 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~ 570 (1012)
|+.++++++.+. .++++++++|+|+||.+++.++.+.|+. ++++|+.+| +.++...
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p---~~~~~~~--------------- 208 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISP---ILDATLS--------------- 208 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESC---CCCTTCC---------------
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECc---ccccCcC---------------
Confidence 899999999887 6788999999999999999998876665 889998888 2221000
Q ss_pred ccccCCCCcccccCCCC-cchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcE
Q psy1288 571 FCDLDTIPDRKIEGKLP-LTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPAT 649 (1012)
Q Consensus 571 ~~dl~~~~~~~~~~~~p-lt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~v 649 (1012)
...+..... ...+ +... .... +.. .|. +.... . ....+|....- ...||+
T Consensus 209 ---~~~~~~~~~-~~~~~~~~~---~~~~--~~~-----~~~---~~~~~-~----~~~~~~~~~~~-------~~~~P~ 259 (326)
T 3d7r_A 209 ---NKDISDALI-EQDAVLSQF---GVNE--IMK-----KWA---NGLPL-T----DKRISPINGTI-------EGLPPV 259 (326)
T ss_dssp ---CTTCCHHHH-HHCSSCCHH---HHHH--HHH-----HHH---TTSCT-T----STTTSGGGSCC-------TTCCCE
T ss_pred ---ChhHHhhhc-ccCcccCHH---HHHH--HHH-----Hhc---CCCCC-C----CCeECcccCCc-------ccCCCE
Confidence 000000000 0000 0000 0000 000 000 00000 0 00113332211 234559
Q ss_pred EEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc-ccchhhhhHHHHHHHHhCC
Q psy1288 650 LLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT-TKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 650 LiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~-~~~~~~~~~~~~fl~~~l~ 721 (1012)
|++||..|. ...++..+..++..+ +..+.+.++++++|++.... ....+....+.+|+.+++.
T Consensus 260 lii~G~~D~--~~~~~~~~~~~l~~~-------~~~~~~~~~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 260 YMFGGGREM--THPDMKLFEQMMLQH-------HQYIEFYDYPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp EEEEETTST--THHHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred EEEEeCccc--chHHHHHHHHHHHHC-------CCcEEEEEeCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 999999996 455677888888887 78899999999999975411 1223455677788877654
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=147.68 Aligned_cols=287 Identities=12% Similarity=0.059 Sum_probs=154.0
Q ss_pred CCceEEEEEECCC--Cc--eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC-CCCCcC----hhHHHHHH-hCCeEEEEEc
Q psy1288 400 LFETKQVFYPSKD--GT--KIPMFILSRKGAQLDGNNPCILYGYGGFAVS-LQPGFS----VTKIVFLR-DFNGIYAIPN 469 (1012)
Q Consensus 400 ~~~~~~v~~~s~D--G~--~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~----~~~~~~l~-~~G~~v~~~d 469 (1012)
.....++.|.+.| |. .+.++++.|.+. .++.|+|++.||..... ..+.+. ......++ ++||+|+.+|
T Consensus 40 ~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D 117 (377)
T 4ezi_A 40 DLQLYKINYKTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPD 117 (377)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEEC
T ss_pred CcEEEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeC
Confidence 3456777777765 54 467899999873 46789999999975321 112211 12233455 6899999999
Q ss_pred CCCCCCCchh---HHhhhhcCCCcchHhHHHHHHHHHHHc-CCCCCCcEEEEecChHHHHHHHHHhhC----CC-ceeEE
Q psy1288 470 IRGGGEYGER---WHDGGRLLNKQNVFDDFQCAAEYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQR----PD-LFGAA 540 (1012)
Q Consensus 470 ~RG~g~~g~~---~~~~~~~~~~~~~~~D~~a~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~----p~-~f~a~ 540 (1012)
+||.|+.+.. +.. +. .....+.|.+.++..+.+. +..+.++++++|+|+||.++++++... |+ .+.++
T Consensus 118 ~rG~G~s~~~~~~~~~-~~--~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~ 194 (377)
T 4ezi_A 118 YLGLGDNELTLHPYVQ-AE--TLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAV 194 (377)
T ss_dssp CTTSTTCCCSSCCTTC-HH--HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEE
T ss_pred CCCCCCCCCCCccccc-ch--hHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEE
Confidence 9998866431 110 00 0011233444444334333 444678999999999999999887664 33 46778
Q ss_pred EEccCCCccccCcceeeeeccccccc-C---cccc-----cccC-CCCcccccCCCCcchhhhhhhhhhhcc--------
Q psy1288 541 IVQVGNPEISDCGRWLIVHTMKDCKN-N---MFHF-----CDLD-TIPDRKIEGKLPLTQVVHKVLDMLKFN-------- 602 (1012)
Q Consensus 541 v~~~~~~~i~d~~~~~~~~~~~~~~~-~---~~~~-----~dl~-~~~~~~~~~~~plt~~~~~~~d~~~~~-------- 602 (1012)
++..+ .+|+..... .+..... . ...+ ..+. .-|+. . --|+..-+...+.....
T Consensus 195 ~~~~~---p~dl~~~~~--~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~-~---~~l~~~~~~~~~~~~~~~~~~~~~~ 265 (377)
T 4ezi_A 195 APGSA---PYGWEETMH--FVMLEPGPRATAYLAYFFYSLQTYKSYWSGF-D---EIFAPPYNTLIPELMDGYHAVDEIL 265 (377)
T ss_dssp EEESC---CCCHHHHHH--HHHHSCCTTHHHHHHHHHHHHHHHHCCSSCH-H---HHBCTTHHHHHHHHTSSCSCHHHHH
T ss_pred EecCc---ccCHHHHHH--HHhcCCCcccchhHHHHHHHHHHHHHhccCH-H---HHhCHHHHHHHHHHhhcccchhhhh
Confidence 87776 344321100 0000000 0 0000 0000 00000 0 00000000000000000
Q ss_pred -cc--cccccccccc----CCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhh
Q psy1288 603 -KF--TIGYFWESDY----GSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEK 675 (1012)
Q Consensus 603 -~~--~~g~~~~~~~----g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~ 675 (1012)
.+ .....+...+ -++.++...+.+........ ..+.| +|++||..|..||+.++.++++++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~--------~~~~P-vli~hG~~D~~Vp~~~~~~l~~~l~~~ 336 (377)
T 4ezi_A 266 QALPQDPLLIFQPKFSNGIISKTDRNTEILKINFNHYDF--------KPTAP-LLLVGTKGDRDVPYAGAEMAYHSFRKY 336 (377)
T ss_dssp HHSCSSGGGGBCHHHHHHHHTTCSTTHHHHHHHHCCCCS--------CCSSC-EEEEECTTCSSSCHHHHHHHHHHHHTT
T ss_pred hccCCCHHHHhchhhhhhcccccchHHHHHHHHhcccCC--------CCCCC-EEEEecCCCCCCCHHHHHHHHHHHHhc
Confidence 00 0000000000 00112222222333222211 35677 999999999999999999999999988
Q ss_pred hccCCCCCCcEEEEEeCC--CCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 676 LRDYPHQTNPLLIRIETK--AGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 676 ~~~~~~~~~~~~l~~~p~--~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+. ++++.+++ .+|+... .....+.++||++++..
T Consensus 337 -------G~-v~~~~~~~~~~~H~~~~-----~~~~~~~~~wl~~~~~~ 372 (377)
T 4ezi_A 337 -------SD-FVWIKSVSDALDHVQAH-----PFVLKEQVDFFKQFERQ 372 (377)
T ss_dssp -------CS-CEEEEESCSSCCTTTTH-----HHHHHHHHHHHHHHHTS
T ss_pred -------CC-EEEEEcCCCCCCccChH-----HHHHHHHHHHHHHhhcc
Confidence 78 99999999 8897532 35567788999998654
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-13 Score=144.58 Aligned_cols=246 Identities=16% Similarity=0.108 Sum_probs=146.4
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcCh--hHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSV--TKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
..+.+.+.|+ +|..+.++ +.|.+ .|+|+++||+........|.. ...+++++.|++|+.+|.++++.+.
T Consensus 10 ~~~~~~~~S~~~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~- 81 (280)
T 1r88_A 10 PYENLMVPSPSMGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYT- 81 (280)
T ss_dssp CCEEEEEEETTTTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTS-
T ss_pred CEEEEEEECcccCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccC-
Confidence 4567777775 68889888 67764 279999999843222223322 2345677779999999997654331
Q ss_pred hHHhhhhcCCCcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCccee
Q psy1288 479 RWHDGGRLLNKQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWL 556 (1012)
Q Consensus 479 ~~~~~~~~~~~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~ 556 (1012)
.|..... ..+.++. ..+.++.++-.+++++++|+|+|+||++++.++.++|++|+++++.+| ..++
T Consensus 82 ~~~~~~~-----~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg---~~~~---- 149 (280)
T 1r88_A 82 NWEQDGS-----KQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSG---FLYP---- 149 (280)
T ss_dssp BCSSCTT-----CBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC---CCCT----
T ss_pred CCCCCCC-----CcHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECC---ccCc----
Confidence 1111100 1222221 223334342336778999999999999999999999999999999988 1110
Q ss_pred eeecccccccCcccccccCCCCcccccCCCCcchhhhhhhh-hh-hccccccccccccccCCCCChHHHHHHHcCCcccC
Q psy1288 557 IVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLD-ML-KFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHN 634 (1012)
Q Consensus 557 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d-~~-~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~ 634 (1012)
... .... ... .+ ... +..+...||.+.. ..+...+|...
T Consensus 150 ------------------~~~----------~~~~---~~~~~~~~~~----~~~~~~~~g~~~~----~~~~~~~p~~~ 190 (280)
T 1r88_A 150 ------------------SNT----------TTNG---AIAAGMQQFG----GVDTNGMWGAPQL----GRWKWHDPWVH 190 (280)
T ss_dssp ------------------TSH----------HHHH---HHHHHHHHHH----CCCTHHHHCCGGG----STTGGGCTTTT
T ss_pred ------------------CCc----------cchh---hHHHHhhhcc----ccchhhhcCCCch----hhhHhcCHHHH
Confidence 000 0000 000 00 000 0001122333321 12344566654
Q ss_pred CCCCCcccCCCCCcEEEEe----eCCCCC-------CChHHHHHHHHHHHhhhccCCCCC-CcEEEEEeCCCCCCCCCcc
Q psy1288 635 IQGPDELKGKQYPATLLMT----ADHDDR-------VSPVHSLKFAATLQEKLRDYPHQT-NPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 635 ~~~p~~~~~~~~P~vLiih----G~~D~~-------v~~~~s~~~~~~L~~~~~~~~~~~-~~~~l~~~p~~gHg~~~~~ 702 (1012)
+.. +...+.| +++.| |..|+. +++.++.++.++|+++ + .++.+.++++++|++...
T Consensus 191 ~~~---~~~~~~p-v~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~-------g~~~~~~~~~~~g~H~~~~w- 258 (280)
T 1r88_A 191 ASL---LAQNNTR-VWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSV-------GGHNGHFDFPASGDNGWGSW- 258 (280)
T ss_dssp HHH---HHHTTCE-EEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHT-------TCCSEEEECCSSCCSSHHHH-
T ss_pred HHh---hhccCCe-EEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHC-------CCcceEEEecCCCCcChhHH-
Confidence 430 0002344 99999 999984 5888999999999988 7 889999988999986432
Q ss_pred ccchhhhhHHHHHHHHhCC
Q psy1288 703 TKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 703 ~~~~~~~~~~~~fl~~~l~ 721 (1012)
...+.+.+.|+...+.
T Consensus 259 ---~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 259 ---APQLGAMSGDIVGAIR 274 (280)
T ss_dssp ---HHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHh
Confidence 2345556667665543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-11 Score=138.80 Aligned_cols=242 Identities=12% Similarity=0.055 Sum_probs=142.6
Q ss_pred eEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceee-eee
Q psy1288 130 SVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKF-VSI 208 (1012)
Q Consensus 130 ~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~-~~~ 208 (1012)
..+|+....++...+|++.... .....+..++|||||++|||..+.+|. .+||++|+++|+.++++...... ..+
T Consensus 11 ~~~~~~~~~g~~~~~lt~~~~~--~~~~~~~~~~~SpDg~~l~~~~~~~g~--~~l~~~d~~~g~~~~lt~~~~~~~~~~ 86 (388)
T 3pe7_A 11 FDTYQDASTGAQVTRLTPPDVT--CHRNYFYQKCFTRDGSKLLFGGAFDGP--WNYYLLDLNTQVATQLTEGRGDNTFGG 86 (388)
T ss_dssp CEEEECTTTCCEEEECSCTTSC--EECCCTTSCCBCTTSCEEEEEECTTSS--CEEEEEETTTCEEEECCCSSCBCSSSC
T ss_pred ceEEecCCCCcceEEecCCccc--ccchhhcCccCCCCCCEEEEEEcCCCC--ceEEEEeCCCCceEEeeeCCCCCccce
Confidence 5677765555666676652210 001123348999999999999986663 48999999999988766544332 267
Q ss_pred EEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeeccccceeee--eeecCCCEEEEEECC------------------
Q psy1288 209 AWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVNVAPITSQ--YITNEGPQFVFKTNK------------------ 267 (1012)
Q Consensus 209 ~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~~~~i~~~--~~s~dg~~l~~~tn~------------------ 267 (1012)
.|||||+.|+|...+....-. ...++ ...++.... ...... .+++||+.++.....
T Consensus 87 ~~spdg~~l~~~~~~~~l~~~d~~~g~-~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 87 FLSPDDDALFYVKDGRNLMRVDLATLE-ENVVYQVPA--EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCC-EEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCc-ceeeeechh--hcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence 999999999999854210000 01111 111111110 011111 247899887755311
Q ss_pred CCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcC---ceEEEEEEecCCCceeeeecCC-c-e
Q psy1288 268 DAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYIHH---VKNVMHLHDLASGKHLYTFPLD-V-G 341 (1012)
Q Consensus 268 ~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~---g~~~l~~~dl~~G~~~~~l~~~-~-~ 341 (1012)
......|+.+|+.+++ .+.+.... ..+......+ +++.|++..... ...+|+++++++++. +.+... . .
T Consensus 164 ~~~~~~l~~~d~~~g~---~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~ 238 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGE---STVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGE 238 (388)
T ss_dssp GCCCEEEEEEETTTCC---EEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTE
T ss_pred cCCcceEEEEECCCCc---eEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCc
Confidence 1234789999998775 34454433 2232323344 545666655432 245899999854443 444433 2 3
Q ss_pred EEEeecccccCcEEEEEecCCCCC-cEEEEEeCCCCCCCCCCcceEEEEe
Q psy1288 342 TIVGFSGKKKYSEIFYSFMSFLQP-TIIFHCNIPARVDPNSKLETSIFRE 390 (1012)
Q Consensus 342 ~v~~~~~spdg~~l~~~~ss~~~p-~~l~~~d~~~~~~~~g~~~~~~l~~ 390 (1012)
.+..+.|+|||+.|+|.......+ ..|+++|+ ++| +.+.+..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~-----~~g--~~~~l~~ 281 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP-----ETL--ENRQLTS 281 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECT-----TTC--CEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEec-----CCC--ceEEEEc
Confidence 466778999999998876543333 36999999 466 4455544
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-13 Score=143.57 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=123.6
Q ss_pred CCCCcEEEEEcCCCCCC---CCCCcChhHHHHH----HhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHH
Q psy1288 429 DGNNPCILYGYGGFAVS---LQPGFSVTKIVFL----RDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAE 501 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l----~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~ 501 (1012)
.++.|+||++|||.... ....|.. ....| .+.||.|+.+|+|+.++. .....++|+.++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~-~~~~L~~~a~~~g~~vi~~d~r~~~~~-----------~~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQ-LANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 105 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHH-HHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHH-HHHHHhhhhccCCcEEEEeecccCCCC-----------CCCcHHHHHHHHHH
Confidence 45679999999975332 1122332 34455 457999999999986532 11234678899999
Q ss_pred HHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-----------------CCceeEEEEccCCCccccCcceeeeeccccc
Q psy1288 502 YLIASGYTQSSRLAIQGGSNGGLLTAACINQR-----------------PDLFGAAIVQVGNPEISDCGRWLIVHTMKDC 564 (1012)
Q Consensus 502 ~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----------------p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~ 564 (1012)
++.++ .++++++++|+|+||.+++.++.+. |+.+++++...+ +.++....
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~---~~~~~~~~-------- 172 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDG---IYSLKELL-------- 172 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESC---CCCHHHHH--------
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecc---cccHHHhh--------
Confidence 98887 4678999999999999999998875 678899988877 22210000
Q ss_pred ccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCC
Q psy1288 565 KNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGK 644 (1012)
Q Consensus 565 ~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~ 644 (1012)
...+. ....+. ..+... ...|. ...... +|+.... +...
T Consensus 173 ----------~~~~~---------------~~~~~~-~~~~~~---~~~~~--~~~~~~------~~~~~~~----~~~~ 211 (273)
T 1vkh_A 173 ----------IEYPE---------------YDCFTR-LAFPDG---IQMYE--EEPSRV------MPYVKKA----LSRF 211 (273)
T ss_dssp ----------HHCGG---------------GHHHHH-HHCTTC---GGGCC--CCHHHH------HHHHHHH----HHHH
T ss_pred ----------hhccc---------------HHHHHH-HHhccc---ccchh--hccccc------Chhhhhc----cccc
Confidence 00000 000000 000000 00010 011111 1110000 0013
Q ss_pred CCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC
Q psy1288 645 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 699 (1012)
Q Consensus 645 ~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~ 699 (1012)
+.| +|++||..|..+++.++.++.+.+... +.++.+.++++++|.+.
T Consensus 212 ~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~-------~~~~~~~~~~~~gH~~~ 258 (273)
T 1vkh_A 212 SID-MHLVHSYSDELLTLRQTNCLISCLQDY-------QLSFKLYLDDLGLHNDV 258 (273)
T ss_dssp TCE-EEEEEETTCSSCCTHHHHHHHHHHHHT-------TCCEEEEEECCCSGGGG
T ss_pred CCC-EEEEecCCcCCCChHHHHHHHHHHHhc-------CCceEEEEeCCCccccc
Confidence 456 999999999999999999999999988 88899999999999864
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=141.87 Aligned_cols=231 Identities=14% Similarity=0.081 Sum_probs=129.3
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
+..+.||++||-.+... .|.. +...|+++||.|+.+|+||.|......... ......+|+.+++++|...
T Consensus 49 G~~~~VlllHG~~~s~~--~~~~-la~~La~~Gy~Via~Dl~GhG~S~~~~~~~----~~~~~~~d~~~~~~~l~~~--- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGSPQ--SMRF-LAEGFARAGYTVATPRLTGHGTTPAEMAAS----TASDWTADIVAAMRWLEER--- 118 (281)
T ss_dssp CSSEEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEECCCTTSSSCHHHHHTC----CHHHHHHHHHHHHHHHHHH---
T ss_pred CCCceEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEECCCCCCCCCccccCC----CHHHHHHHHHHHHHHHHhC---
Confidence 45567899999544332 3433 356677789999999999988653322111 1112246777777877654
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCccccccc-CCCCcccccCCCCc
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDL-DTIPDRKIEGKLPL 588 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl-~~~~~~~~~~~~pl 588 (1012)
.+++.++|+|+||.+++.++.++|++++++|...+ ...+.... ...... ...+.... .+
T Consensus 119 -~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~---~~~~~~~~------------~~~~~~~~~~~~~~~--~~-- 178 (281)
T 4fbl_A 119 -CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINA---ALRMESPD------------LAALAFNPDAPAELP--GI-- 178 (281)
T ss_dssp -CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESC---CSCCCCHH------------HHHHHTCTTCCSEEE--CC--
T ss_pred -CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccc---hhcccchh------------hHHHHHhHhhHHhhh--cc--
Confidence 46899999999999999999999999999998877 11100000 000000 00000000 00
Q ss_pred chhhhhhhhhhhccccccccccccccCCCCCh-HHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHH
Q psy1288 589 TQVVHKVLDMLKFNKFTIGYFWESDYGSPANS-SQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLK 667 (1012)
Q Consensus 589 t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~-~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~ 667 (1012)
..++. .....++..+..+ .....+........ ..++++++| +|++||..|..|++..+..
T Consensus 179 ------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~i~~P-~Lii~G~~D~~v~~~~~~~ 239 (281)
T 4fbl_A 179 ------GSDIK--------AEGVKELAYPVTPVPAIKHLITIGAVAE----MLLPRVKCP-ALIIQSREDHVVPPHNGEL 239 (281)
T ss_dssp ------CCCCS--------STTCCCCCCSEEEGGGHHHHHHHHHHHH----HHGGGCCSC-EEEEEESSCSSSCTHHHHH
T ss_pred ------hhhhh--------hHHHHHhhhccCchHHHHHHHHhhhhcc----ccccccCCC-EEEEEeCCCCCcCHHHHHH
Confidence 00000 0000000000000 00000100000000 011257788 9999999999999998887
Q ss_pred HHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 668 FAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 668 ~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
+++++. +..+++++++++||....... .......+.+||++|
T Consensus 240 l~~~l~---------~~~~~l~~~~~~gH~~~~e~~-~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 240 IYNGIG---------STEKELLWLENSYHVATLDND-KELILERSLAFIRKH 281 (281)
T ss_dssp HHHHCC---------CSSEEEEEESSCCSCGGGSTT-HHHHHHHHHHHHHTC
T ss_pred HHHhCC---------CCCcEEEEECCCCCcCccccC-HHHHHHHHHHHHHhC
Confidence 776653 335788999999997643221 123345677899875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-11 Score=135.03 Aligned_cols=240 Identities=9% Similarity=0.102 Sum_probs=147.0
Q ss_pred ccCCCCCCCeeeCCEEEEEEEcC----CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC
Q psy1288 103 WDYPKYSSPQRQGDHYFFFHNTG----LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS 178 (1012)
Q Consensus 103 ~~~~~~s~p~~dG~~~yy~~~~~----~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~ 178 (1012)
...+..+.|..||++++|+.... +.....||+.+..+++.++| . .+..++|||||++|||.....
T Consensus 12 ~~~~~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~----------~~~~~~~SpDg~~la~~~~~~ 80 (347)
T 2gop_A 12 AKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-E----------NATMPRISPDGKKIAFMRANE 80 (347)
T ss_dssp CCSCEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-E----------SCEEEEECTTSSEEEEEEEET
T ss_pred eeeEEcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-c----------cCCCeEECCCCCEEEEEEecc
Confidence 33444444444999999987632 22367899999888877766 1 256799999999999998876
Q ss_pred CCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc----------cCC-----CCCceEEEEee
Q psy1288 179 GSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK----------KHS-----KKNRSSAYHLT 243 (1012)
Q Consensus 179 G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~----------~~~-----~~~~~l~~~~~ 243 (1012)
+....+||++|+++|+.++++.... ...++|||||+.|+|...+...... .++ .....++....
T Consensus 81 ~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 81 EKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred CCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 5567799999999998877655444 6889999999999999743100000 000 00112222111
Q ss_pred ccc--------cceeeeeeecCCCEEEEEECCCC-----C-CceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCE
Q psy1288 244 VNV--------APITSQYITNEGPQFVFKTNKDA-----P-NYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDK 309 (1012)
Q Consensus 244 ~~~--------~~i~~~~~s~dg~~l~~~tn~~~-----~-~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 309 (1012)
... ..+....|+||| ++|..+.+. . ..+|+.++ +++ ++.+... .... .. .++++.
T Consensus 160 ~~~~~~~~l~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~--~~~~-~~-spdg~~ 228 (347)
T 2gop_A 160 ESEEVIEEFEKPRFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK---EEKMFEK--VSFY-AV-DSDGER 228 (347)
T ss_dssp TTTEEEEEEEEETTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE---EEEEEEE--ESEE-EE-EECSSC
T ss_pred CCCeEEeeecCCCcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc---eEEeccC--ccee-eE-CCCCCE
Confidence 000 022344699999 667665432 1 56899998 333 3555543 2222 23 567677
Q ss_pred EEEEEEcC-----ceEEEEEEecCCCceeeeecCCceEEEe-ecccccCcEEEEEecCCCCCcEEEEEe
Q psy1288 310 LILSYIHH-----VKNVMHLHDLASGKHLYTFPLDVGTIVG-FSGKKKYSEIFYSFMSFLQPTIIFHCN 372 (1012)
Q Consensus 310 l~~~~~~~-----g~~~l~~~dl~~G~~~~~l~~~~~~v~~-~~~spdg~~l~~~~ss~~~p~~l~~~d 372 (1012)
|++..... ...+|++++ +|+....+......+.. +.|+ |+ +++..+... ...|| ++
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~~~l~-~~ 290 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-SVNLY-IW 290 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETT-EEEEE-EE
T ss_pred EEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCC-cEEEE-Ec
Confidence 77766543 246899998 55543333332455654 7788 76 666554332 34567 66
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-12 Score=130.77 Aligned_cols=217 Identities=13% Similarity=-0.023 Sum_probs=140.4
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh------
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG------ 484 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~------ 484 (1012)
.+|. ...++.|.+ +.|+||++||..+... .|.. ....|.++||.|+.+|+||.|.....+....
T Consensus 10 ~~g~--~~~~~~~~~-----~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~~~~ 79 (238)
T 1ufo_A 10 LAGL--SVLARIPEA-----PKALLLALHGLQGSKE--HILA-LLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVE 79 (238)
T ss_dssp ETTE--EEEEEEESS-----CCEEEEEECCTTCCHH--HHHH-TSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHH
T ss_pred cCCE--EEEEEecCC-----CccEEEEECCCcccch--HHHH-HHHHHHhCCCEEEEecCCCCccCCCCCCcccccchhh
Confidence 3554 344566654 5789999999764332 2221 2234556799999999999775432111000
Q ss_pred -hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccc
Q psy1288 485 -RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKD 563 (1012)
Q Consensus 485 -~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~ 563 (1012)
.........+|+.++++++.+.+. .+++++|+|+||.+++.++.++|+.+.+++...+ ...
T Consensus 80 ~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~---~~~------------ 141 (238)
T 1ufo_A 80 EVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGS---GFP------------ 141 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCC---SSC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecC---Ccc------------
Confidence 000011235677778888876543 7899999999999999999999988888777655 000
Q ss_pred cccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccC
Q psy1288 564 CKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKG 643 (1012)
Q Consensus 564 ~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~ 643 (1012)
..+.. ..+.. +.....+..+++...+. .
T Consensus 142 -----------~~~~~--------------------------------~~~~~---~~~~~~~~~~~~~~~~~------~ 169 (238)
T 1ufo_A 142 -----------MKLPQ--------------------------------GQVVE---DPGVLALYQAPPATRGE------A 169 (238)
T ss_dssp -----------CCCCT--------------------------------TCCCC---CHHHHHHHHSCGGGCGG------G
T ss_pred -----------chhhh--------------------------------hhccC---CcccchhhcCChhhhhh------h
Confidence 00000 00001 11234455555655554 4
Q ss_pred C-CCCcEEEEeeCCCCCCChHHHHHHHHHHH-hhhccCCCCCC-cEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 644 K-QYPATLLMTADHDDRVSPVHSLKFAATLQ-EKLRDYPHQTN-PLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 644 ~-~~P~vLiihG~~D~~v~~~~s~~~~~~L~-~~~~~~~~~~~-~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
. +.| +|++||..|..+++..+.++...+. .. +. .+.+.++++++|.+.. +....+.+|+.+.+
T Consensus 170 ~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~H~~~~------~~~~~~~~~l~~~l 235 (238)
T 1ufo_A 170 YGGVP-LLHLHGSRDHIVPLARMEKTLEALRPHY-------PEGRLARFVEEGAGHTLTP------LMARVGLAFLEHWL 235 (238)
T ss_dssp GTTCC-EEEEEETTCTTTTHHHHHHHHHHHGGGC-------TTCCEEEEEETTCCSSCCH------HHHHHHHHHHHHHH
T ss_pred ccCCc-EEEEECCCCCccCcHHHHHHHHHHhhcC-------CCCceEEEEeCCCCcccHH------HHHHHHHHHHHHHH
Confidence 5 677 9999999999999999988888887 65 55 7899999999998643 34556678887765
Q ss_pred C
Q psy1288 721 P 721 (1012)
Q Consensus 721 ~ 721 (1012)
+
T Consensus 236 ~ 236 (238)
T 1ufo_A 236 E 236 (238)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=128.44 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=129.3
Q ss_pred EEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCc------hhHHh----hhhcCCC
Q psy1288 420 ILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYG------ERWHD----GGRLLNK 489 (1012)
Q Consensus 420 l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g------~~~~~----~~~~~~~ 489 (1012)
++.|+. .++.|+||++||..+... .|.. ....+.++||.|+.+|.++.+... ..|.+ .......
T Consensus 14 ~~~p~~---~~~~~~vv~lHG~~~~~~--~~~~-~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~ 87 (232)
T 1fj2_A 14 AIVPAA---RKATAAVIFLHGLGDTGH--GWAE-AFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQED 87 (232)
T ss_dssp EEECCS---SCCSEEEEEECCSSSCHH--HHHH-HHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBC
T ss_pred cccCCC---CCCCceEEEEecCCCccc--hHHH-HHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccc
Confidence 344543 356799999999764321 2222 234455569999998544311000 00000 0000001
Q ss_pred c----chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccc
Q psy1288 490 Q----NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCK 565 (1012)
Q Consensus 490 ~----~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~ 565 (1012)
. ...+|+.+.++++.+ ..+++++++++|+|+||.+++.++.++|+.+++++...+
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~-------------------- 146 (232)
T 1fj2_A 88 ESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSC-------------------- 146 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESC--------------------
T ss_pred cHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeec--------------------
Confidence 1 123455555565555 446778999999999999999999999999999999888
Q ss_pred cCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCC
Q psy1288 566 NNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQ 645 (1012)
Q Consensus 566 ~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~ 645 (1012)
+.+ + . ..+.. ...... ..+
T Consensus 147 -----~~~--------------~-------~---------------~~~~~--------------~~~~~~------~~~ 165 (232)
T 1fj2_A 147 -----WLP--------------L-------R---------------ASFPQ--------------GPIGGA------NRD 165 (232)
T ss_dssp -----CCT--------------T-------G---------------GGSCS--------------SCCCST------TTT
T ss_pred -----CCC--------------C-------C---------------ccccc--------------cccccc------cCC
Confidence 100 0 0 00000 001112 456
Q ss_pred CCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCc--EEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 646 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNP--LLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 646 ~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~--~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.| +|++||..|..+++..+.++...+... +.. +.++++++++|.+. .+....+.+||.+.+..
T Consensus 166 ~P-~l~i~G~~D~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~H~~~------~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 166 IS-ILQCHGDCDPLVPLMFGSLTVEKLKTL-------VNPANVTFKTYEGMMHSSC------QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp CC-EEEEEETTCSSSCHHHHHHHHHHHHHH-------SCGGGEEEEEETTCCSSCC------HHHHHHHHHHHHHHSCC
T ss_pred CC-EEEEecCCCccCCHHHHHHHHHHHHHh-------CCCCceEEEEeCCCCcccC------HHHHHHHHHHHHHhcCC
Confidence 67 999999999999999999999999887 644 89999999999872 24456788999998764
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=134.29 Aligned_cols=200 Identities=16% Similarity=0.106 Sum_probs=131.8
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc-CC--
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL-LN-- 488 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~-~~-- 488 (1012)
++..+.+.+..|.. .+.|+||++||..+... .|.. ....+.. |+.|+.+|.++....|..|...... ..
T Consensus 14 ~~~~l~~~~~~~~~----~~~p~vv~lHG~g~~~~--~~~~-~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~ 85 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK----ESRECLFLLHGSGVDET--TLVP-LARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQ 85 (223)
T ss_dssp CSSSSCEEEESTTS----SCCCEEEEECCTTBCTT--TTHH-HHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECH
T ss_pred cCCCceEEEeCCCC----CCCCEEEEEecCCCCHH--HHHH-HHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccH
Confidence 34456555544432 23489999999754332 3433 3455654 9999999987632223334321100 00
Q ss_pred --CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccccccc
Q psy1288 489 --KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKN 566 (1012)
Q Consensus 489 --~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~ 566 (1012)
.....+|+.+.++++.++..+++++++++|+|+||.+++.++.++|++++++++.++
T Consensus 86 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~--------------------- 144 (223)
T 3b5e_A 86 KSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRP--------------------- 144 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecC---------------------
Confidence 011234555556666655446889999999999999999999999999999999888
Q ss_pred CcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCC
Q psy1288 567 NMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQY 646 (1012)
Q Consensus 567 ~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~ 646 (1012)
+.. . . .+ + ... ..+.
T Consensus 145 ----~~~--------------~-----------------------~---~~-------------~--~~~------~~~~ 159 (223)
T 3b5e_A 145 ----MPV--------------L-----------------------D---HV-------------P--ATD------LAGI 159 (223)
T ss_dssp ----CCC--------------C-----------------------S---SC-------------C--CCC------CTTC
T ss_pred ----ccC--------------c-----------------------c---cc-------------c--ccc------ccCC
Confidence 000 0 0 00 0 111 2456
Q ss_pred CcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 647 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 647 P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
| +|++||..|..+++..+. +.+.+..+ +.++++.+++ +||.+.. +....+.+|+.+.+.
T Consensus 160 P-~li~~G~~D~~v~~~~~~-~~~~l~~~-------g~~~~~~~~~-~gH~~~~------~~~~~i~~~l~~~~~ 218 (223)
T 3b5e_A 160 R-TLIIAGAADETYGPFVPA-LVTLLSRH-------GAEVDARIIP-SGHDIGD------PDAAIVRQWLAGPIA 218 (223)
T ss_dssp E-EEEEEETTCTTTGGGHHH-HHHHHHHT-------TCEEEEEEES-CCSCCCH------HHHHHHHHHHHCC--
T ss_pred C-EEEEeCCCCCcCCHHHHH-HHHHHHHC-------CCceEEEEec-CCCCcCH------HHHHHHHHHHHhhhh
Confidence 6 999999999999999999 88888887 7889999999 9998742 334567788876543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-10 Score=121.53 Aligned_cols=218 Identities=10% Similarity=-0.037 Sum_probs=141.5
Q ss_pred CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC-Cceeceeecc--ee
Q psy1288 128 NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT-GKEYPEVLHR--LK 204 (1012)
Q Consensus 128 ~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t-g~~~~~t~~~--~~ 204 (1012)
....|++.+..+++.+.++.. ...+..++|||||++|++..+ + .|+++|+++ ++........ ..
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~--~----~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT-------PELFEAPNWSPDGKYLLLNSE--G----LLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-------SSCCEEEEECTTSSEEEEEET--T----EEEEEESSSCCSCEECCCTTCCCB
T ss_pred cceeEEEEeCCCCceeeeccC-------CcceEeeEECCCCCEEEEEcC--C----eEEEEeCCCCCCceEecccccccc
Confidence 346788888877777766652 234778999999999999642 2 799999999 8766543222 23
Q ss_pred eeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc--------ccceeeeeeecCCCEEEEEECCCCCCceEEE
Q psy1288 205 FVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN--------VAPITSQYITNEGPQFVFKTNKDAPNYRLIT 276 (1012)
Q Consensus 205 ~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~--------~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~ 276 (1012)
...++|+|||+.|++...... ....++...... ...+....|+|||+.|++....+. ..+|+.
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~l~~ 157 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEF--------GKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ-VFDIYS 157 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTT--------SSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT-EEEEEE
T ss_pred ccceEECCCCCEEEEEEeCCC--------CcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCC-ceEEEE
Confidence 467999999999999874321 112222221100 012334469999999998775442 468898
Q ss_pred EeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEE
Q psy1288 277 IDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEI 355 (1012)
Q Consensus 277 ~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l 355 (1012)
+++.+.. ...+... ...+ ..+.+ .+++.+++....++..+|+.+++.++. ...+......+..+.|+|+++.|
T Consensus 158 ~~~~~~~---~~~~~~~-~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l 231 (297)
T 2ojh_A 158 MDIDSGV---ETRLTHG-EGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS-VERITDSAYGDWFPHPSPSGDKV 231 (297)
T ss_dssp EETTTCC---EEECCCS-SSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-EEECCCCSEEEEEEEECTTSSEE
T ss_pred EECCCCc---ceEcccC-CCcc-ccceECCCCCEEEEEecCCCCccEEEECCCCCC-cEEEecCCcccCCeEECCCCCEE
Confidence 8886654 2333332 2223 33333 455667777666777889988874443 34555445566778999999998
Q ss_pred EEEecCCC-------CCcEEEEEeC
Q psy1288 356 FYSFMSFL-------QPTIIFHCNI 373 (1012)
Q Consensus 356 ~~~~ss~~-------~p~~l~~~d~ 373 (1012)
++...... ....|+.+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 232 VFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EEEEEETTCCSCCSSEEEEEEEEET
T ss_pred EEEEcCCCCCcccccCceEEEEEec
Confidence 88776432 2257999999
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.7e-12 Score=128.97 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=125.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh--CCeEEEEEcCCC------CCCCchhHHhh-hhc---CCCcchH---
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD--FNGIYAIPNIRG------GGEYGERWHDG-GRL---LNKQNVF--- 493 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~RG------~g~~g~~~~~~-~~~---~~~~~~~--- 493 (1012)
.++.|+||++||..+... .|. .....+.+ +||.|+.+|.+| ++..+..|.+. +.. ......+
T Consensus 11 ~~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~ 87 (218)
T 1auo_A 11 KPADACVIWLHGLGADRY--DFM-PVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVS 87 (218)
T ss_dssp SCCSEEEEEECCTTCCTT--TTH-HHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHH
T ss_pred CCCCcEEEEEecCCCChh--hHH-HHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccccchHHHHHH
Confidence 356799999999764432 333 34566776 799999998764 11111122111 000 0111123
Q ss_pred -hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh-hCCCceeEEEEccCCCccccCcceeeeecccccccCcccc
Q psy1288 494 -DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN-QRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHF 571 (1012)
Q Consensus 494 -~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~ 571 (1012)
+|+...++++.+ ..+++++++++|+|+||.+++.++. ++|++++++++.+| +
T Consensus 88 ~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~-------------------------~ 141 (218)
T 1auo_A 88 AKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALST-------------------------Y 141 (218)
T ss_dssp HHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESC-------------------------C
T ss_pred HHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECC-------------------------C
Confidence 334444444443 2467889999999999999999999 88999999999888 1
Q ss_pred cccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEE
Q psy1288 572 CDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLL 651 (1012)
Q Consensus 572 ~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLi 651 (1012)
.+... +...+ ... ..+.| +|+
T Consensus 142 ~~~~~---------------------------------~~~~~-------------------~~~------~~~~P-~l~ 162 (218)
T 1auo_A 142 APTFG---------------------------------DELEL-------------------SAS------QQRIP-ALC 162 (218)
T ss_dssp CTTCC---------------------------------TTCCC-------------------CHH------HHTCC-EEE
T ss_pred CCCch---------------------------------hhhhh-------------------hhc------ccCCC-EEE
Confidence 00000 00000 001 24566 999
Q ss_pred EeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 652 MTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 652 ihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
+||..|..+++..+.++.+.+... +..+.+.+++ ++|.+.. +....+.+|+.+.+
T Consensus 163 i~G~~D~~~~~~~~~~~~~~l~~~-------g~~~~~~~~~-~gH~~~~------~~~~~~~~~l~~~l 217 (218)
T 1auo_A 163 LHGQYDDVVQNAMGRSAFEHLKSR-------GVTVTWQEYP-MGHEVLP------QEIHDIGAWLAARL 217 (218)
T ss_dssp EEETTCSSSCHHHHHHHHHHHHTT-------TCCEEEEEES-CSSSCCH------HHHHHHHHHHHHHH
T ss_pred EEeCCCceecHHHHHHHHHHHHhC-------CCceEEEEec-CCCccCH------HHHHHHHHHHHHHh
Confidence 999999999999999999999887 7789999999 9998632 34556778888764
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=152.48 Aligned_cols=133 Identities=13% Similarity=0.094 Sum_probs=102.3
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
.+.+.++++||.+|.+.++.|++ .++.|+||+.||...... ...|....+.+++++||+|+.+|+||.|+.+..+.
T Consensus 9 ~~~v~i~~~DG~~L~~~~~~P~~---~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~~~ 85 (587)
T 3i2k_A 9 ASNVMVPMRDGVRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFV 85 (587)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC---SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSCCC
T ss_pred EEEEEEECCCCCEEEEEEEECCC---CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCccc
Confidence 45688999999999999999976 357899999876432211 00121111155667899999999999987765442
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
. .....+|+.++++|+.++.+.+ .+|+++|+|+||++++.++...|+.++++|..++
T Consensus 86 ~------~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~ 142 (587)
T 3i2k_A 86 P------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMA 142 (587)
T ss_dssp T------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESC
T ss_pred c------ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCC
Confidence 2 2346789999999999887655 7999999999999999999988999999999988
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-12 Score=133.37 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=124.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEE--cCCCCCCCchhHHhh-hhcCCC----cchHhHHHHHHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIP--NIRGGGEYGERWHDG-GRLLNK----QNVFDDFQCAAEY 502 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~--d~RG~g~~g~~~~~~-~~~~~~----~~~~~D~~a~~~~ 502 (1012)
++.|+||++||+.+... .|.. ....|+. +|.|+++ +.+|.|+.+ |... ...... ....+|+.+.+++
T Consensus 60 ~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~-~~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN--QFFD-FGARLLP-QATILSPVGDVSEHGAAR--FFRRTGEGVYDMVDLERATGKMADFIKA 133 (251)
T ss_dssp TTSCEEEEECCTTCCHH--HHHH-HHHHHST-TSEEEEECCSEEETTEEE--SSCBCGGGCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh--HHHH-HHHhcCC-CceEEEecCCcCCCCCcc--cccCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 46799999999764332 2322 3455664 7999999 677766331 2111 001011 1224566666776
Q ss_pred HHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccc
Q psy1288 503 LIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKI 582 (1012)
Q Consensus 503 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 582 (1012)
+.++. +.++++++|+|+||.+++.++.++|++++++|...| ..+
T Consensus 134 ~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~---~~~------------------------------- 177 (251)
T 2r8b_A 134 NREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHP---LIP------------------------------- 177 (251)
T ss_dssp HHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESC---CCC-------------------------------
T ss_pred HHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEec---CCC-------------------------------
Confidence 66553 678999999999999999999999999999999888 000
Q ss_pred cCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCCh
Q psy1288 583 EGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSP 662 (1012)
Q Consensus 583 ~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~ 662 (1012)
+ .. ..... ..+.| +|++||..|..+++
T Consensus 178 ---------------------------~-~~------------------~~~~~------~~~~P-~li~~g~~D~~~~~ 204 (251)
T 2r8b_A 178 ---------------------------F-EP------------------KISPA------KPTRR-VLITAGERDPICPV 204 (251)
T ss_dssp ---------------------------S-CC------------------CCCCC------CTTCE-EEEEEETTCTTSCH
T ss_pred ---------------------------c-cc------------------ccccc------ccCCc-EEEeccCCCccCCH
Confidence 0 00 00111 24566 99999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 663 VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 663 ~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
..+.++.+.+.++ +..+++ ..++++|++. .+....+.+||.++++
T Consensus 205 ~~~~~~~~~l~~~-------~~~~~~-~~~~~gH~~~------~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 205 QLTKALEESLKAQ-------GGTVET-VWHPGGHEIR------SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp HHHHHHHHHHHHH-------SSEEEE-EEESSCSSCC------HHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHHHc-------CCeEEE-EecCCCCccC------HHHHHHHHHHHHHhcC
Confidence 9999999999987 677776 5566899873 2345667789988764
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-11 Score=122.87 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=88.3
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChh-HHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT-KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
.||.+|.++++.+.+ +.|+||++||+.+... .|... ....+.++|+.|+.+|.||.+.... ... ....
T Consensus 11 ~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~---~~~-~~~~ 79 (207)
T 3bdi_A 11 VNGTRVFQRKMVTDS-----NRRSIALFHGYSFTSM--DWDKADLFNNYSKIGYNVYAPDYPGFGRSAS---SEK-YGID 79 (207)
T ss_dssp ETTEEEEEEEECCTT-----CCEEEEEECCTTCCGG--GGGGGTHHHHHHTTTEEEEEECCTTSTTSCC---CTT-TCCT
T ss_pred eCCcEEEEEEEeccC-----CCCeEEEECCCCCCcc--ccchHHHHHHHHhCCCeEEEEcCCcccccCc---ccC-CCCC
Confidence 489999999888764 5689999999865443 34331 4566777899999999998764310 000 0011
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++...+..+++. .+.++++++|+|+||.+++.++.+.|+.+++++...|
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~ 133 (207)
T 3bdi_A 80 RGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAP 133 (207)
T ss_dssp TCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCC
Confidence 11466777777666665 2457999999999999999999999999999998877
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=136.27 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=95.7
Q ss_pred CCceEEEEEECCCCceEEEEEEEeCCCC--CCCCCcEEEEEcCCCCCCCCCCcC---hhHHHHHHhCCeEEEEEcCCCCC
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILSRKGAQ--LDGNNPCILYGYGGFAVSLQPGFS---VTKIVFLRDFNGIYAIPNIRGGG 474 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~p~~~~--~~~~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~d~RG~g 474 (1012)
.+..+.+.+.+.||..|.+..+.|.... ..++.|.||++||..+........ ......|.++||.|+++|+||.|
T Consensus 24 ~~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~G 103 (377)
T 1k8q_A 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNT 103 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTST
T ss_pred CCCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCCC
Confidence 3556788889999999988887654311 114678999999976544321111 12334566679999999999987
Q ss_pred CCchhHH--hhhhc--CCCc-chHh-HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC---ceeEEEEccC
Q psy1288 475 EYGERWH--DGGRL--LNKQ-NVFD-DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD---LFGAAIVQVG 545 (1012)
Q Consensus 475 ~~g~~~~--~~~~~--~~~~-~~~~-D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~ 545 (1012)
.....-. ..... .... ...+ |+.+.++++.+. .+.+++.++|+|+||.+++.++.++|+ .++++|...+
T Consensus 104 ~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~~ 181 (377)
T 1k8q_A 104 WARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAP 181 (377)
T ss_dssp TSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESC
T ss_pred CCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeCC
Confidence 5432100 00000 0111 1223 777788877664 234689999999999999999999998 7888888877
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-11 Score=125.52 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=124.8
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh--CCeEEEEEcCCCCC------CCchhHHhh-hhc---CCCcchHhHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD--FNGIYAIPNIRGGG------EYGERWHDG-GRL---LNKQNVFDDF 496 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~RG~g------~~g~~~~~~-~~~---~~~~~~~~D~ 496 (1012)
.++.|+||++||..+... .|.. ....+++ +|+.|+++|.+|.+ ..+..|.+. +.. ......+.+.
T Consensus 21 ~~~~~~vv~lHG~~~~~~--~~~~-~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~~ 97 (226)
T 3cn9_A 21 PNADACIIWLHGLGADRT--DFKP-VAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNAS 97 (226)
T ss_dssp TTCCEEEEEECCTTCCGG--GGHH-HHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHHHHH
T ss_pred CCCCCEEEEEecCCCChH--HHHH-HHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhHHHH
Confidence 466799999999864432 3333 3455665 79999999887421 111111110 000 1111223333
Q ss_pred HHHHHHHHHc---CCCCCCcEEEEecChHHHHHHHHHh-hCCCceeEEEEccCCCccccCcceeeeecccccccCccccc
Q psy1288 497 QCAAEYLIAS---GYTQSSRLAIQGGSNGGLLTAACIN-QRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFC 572 (1012)
Q Consensus 497 ~a~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~ 572 (1012)
...+..+++. ..+++++++++|+|+||.+++.++. ++|+.++++++..+ +.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~-------------------------~~ 152 (226)
T 3cn9_A 98 ADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALST-------------------------YA 152 (226)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESC-------------------------CC
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecC-------------------------cC
Confidence 3333333332 2467789999999999999999998 88999999999888 10
Q ss_pred ccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEE
Q psy1288 573 DLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLM 652 (1012)
Q Consensus 573 dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLii 652 (1012)
+ .. ..+ .+. .. ..+.| +|++
T Consensus 153 ~---------------------~~---------------~~~-------------~~~----~~------~~~~P-~lii 172 (226)
T 3cn9_A 153 P---------------------TF---------------DDL-------------ALD----ER------HKRIP-VLHL 172 (226)
T ss_dssp G---------------------GG---------------GGC-------------CCC----TG------GGGCC-EEEE
T ss_pred C---------------------Cc---------------hhh-------------hhc----cc------ccCCC-EEEE
Confidence 0 00 000 000 01 35667 9999
Q ss_pred eeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 653 TADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 653 hG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
||..|..+++..+.++...+... +.++.+.+++ ++|.+.. +....+.+||.+++
T Consensus 173 ~G~~D~~~~~~~~~~~~~~l~~~-------g~~~~~~~~~-~gH~~~~------~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 173 HGSQDDVVDPALGRAAHDALQAQ-------GVEVGWHDYP-MGHEVSL------EEIHDIGAWLRKRL 226 (226)
T ss_dssp EETTCSSSCHHHHHHHHHHHHHT-------TCCEEEEEES-CCSSCCH------HHHHHHHHHHHHHC
T ss_pred ecCCCCccCHHHHHHHHHHHHHc-------CCceeEEEec-CCCCcch------hhHHHHHHHHHhhC
Confidence 99999999999999999999887 7789999999 9998732 34456778888763
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-11 Score=124.84 Aligned_cols=184 Identities=10% Similarity=0.023 Sum_probs=126.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEE--cCCCCCCCchhHHhhh-hcCCC----cchHhHHHHHHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIP--NIRGGGEYGERWHDGG-RLLNK----QNVFDDFQCAAEY 502 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~--d~RG~g~~g~~~~~~~-~~~~~----~~~~~D~~a~~~~ 502 (1012)
.+.|+||++||..+... .|. .....|++ |+.|+++ +.+|.|... |.... ..... .....++...+++
T Consensus 36 ~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~-g~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNEL--DLL-PLAEIVDS-EASVLSVRGNVLENGMPR--FFRRLAEGIFDEEDLIFRTKELNEFLDE 109 (226)
T ss_dssp TTSCEEEEECCTTCCTT--TTH-HHHHHHHT-TSCEEEECCSEEETTEEE--SSCEEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh--HHH-HHHHHhcc-CceEEEecCcccCCcchh--hccccCccCcChhhHHHHHHHHHHHHHH
Confidence 46799999999865432 333 34566775 9999999 777765321 11000 00001 1123345555566
Q ss_pred HHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccc
Q psy1288 503 LIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKI 582 (1012)
Q Consensus 503 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 582 (1012)
+.+...+++.+++++|+|+||.+++.++.++|++++++++..| ..+
T Consensus 110 ~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~---~~~------------------------------- 155 (226)
T 2h1i_A 110 AAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHP---MVP------------------------------- 155 (226)
T ss_dssp HHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESC---CCS-------------------------------
T ss_pred HHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCC---CCC-------------------------------
Confidence 6666666889999999999999999999999999999999888 000
Q ss_pred cCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCCh
Q psy1288 583 EGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSP 662 (1012)
Q Consensus 583 ~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~ 662 (1012)
+ .+ ..... ..+.| +|+++|..|..+++
T Consensus 156 ---------------------------~-----~~--------------~~~~~------~~~~p-~l~~~G~~D~~~~~ 182 (226)
T 2h1i_A 156 ---------------------------R-----RG--------------MQLAN------LAGKS-VFIAAGTNDPICSS 182 (226)
T ss_dssp ---------------------------C-----SS--------------CCCCC------CTTCE-EEEEEESSCSSSCH
T ss_pred ---------------------------c-----Cc--------------ccccc------ccCCc-EEEEeCCCCCcCCH
Confidence 0 00 00111 23556 99999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 663 VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 663 ~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
..+..+...+... +..+.+ ++++++|.+. .+....+.+|+.+.+
T Consensus 183 ~~~~~~~~~l~~~-------~~~~~~-~~~~~gH~~~------~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 183 AESEELKVLLENA-------NANVTM-HWENRGHQLT------MGEVEKAKEWYDKAF 226 (226)
T ss_dssp HHHHHHHHHHHTT-------TCEEEE-EEESSTTSCC------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc-------CCeEEE-EeCCCCCCCC------HHHHHHHHHHHHHhC
Confidence 9999999999877 778888 9999999873 234556778887653
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=140.89 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch--------------hHHhh----h------
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE--------------RWHDG----G------ 484 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~--------------~~~~~----~------ 484 (1012)
.++.|+||++||+.+... .|. .....|+++||+|+++|+||++.... .|... +
T Consensus 95 ~~~~P~Vv~~HG~~~~~~--~~~-~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 171 (383)
T 3d59_A 95 GEKYPLVVFSHGLGAFRT--LYS-AIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEETHI 171 (383)
T ss_dssp SSCEEEEEEECCTTCCTT--TTH-HHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCch--HHH-HHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeeccccCcccchhh
Confidence 457899999999865432 333 34566777899999999998765321 11000 0
Q ss_pred hcCCCcchHhHHHHHHHHHHH--------------------cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIA--------------------SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~--------------------~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
.........+|+..+++++.+ ...+++++|+++|+|+||.+++.++.+.+ +++++|+..
T Consensus 172 ~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~-~v~a~v~~~ 250 (383)
T 3d59_A 172 RNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQ-RFRCGIALD 250 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCC-CccEEEEeC
Confidence 000001124688888888875 34567889999999999999999887755 689999887
Q ss_pred C
Q psy1288 545 G 545 (1012)
Q Consensus 545 ~ 545 (1012)
|
T Consensus 251 ~ 251 (383)
T 3d59_A 251 A 251 (383)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-11 Score=128.53 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=129.3
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh--CCeEEEEEcCCCCC------CCchhHHhhhhc
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD--FNGIYAIPNIRGGG------EYGERWHDGGRL 486 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~d~RG~g------~~g~~~~~~~~~ 486 (1012)
.+.+.++.|+. ...++||++||..... .+|... ...+.. .++.++.++-.... ..+..|.+....
T Consensus 24 ~l~y~ii~P~~----~~~~~VI~LHG~G~~~--~dl~~l-~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~~~~ 96 (246)
T 4f21_A 24 AMNYELMEPAK----QARFCVIWLHGLGADG--HDFVDI-VNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIKSL 96 (246)
T ss_dssp CCCEEEECCSS----CCCEEEEEEEC--CCC--CCGGGG-GGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTCCCC
T ss_pred CcCceEeCCCC----cCCeEEEEEcCCCCCH--HHHHHH-HHHhhhcCCCeEEEeCCCCccccccCCCCCcccccccccc
Confidence 56678888864 3457899999954322 223221 122221 26788888743211 112345432111
Q ss_pred C-------CCcchHhHHHHHHHHHHH---cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCccee
Q psy1288 487 L-------NKQNVFDDFQCAAEYLIA---SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWL 556 (1012)
Q Consensus 487 ~-------~~~~~~~D~~a~~~~l~~---~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~ 556 (1012)
. .....+......+..+++ ...++++||++.|.|+||.+++.++.+.|+.|+++++.+|
T Consensus 97 ~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG----------- 165 (246)
T 4f21_A 97 DANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALST----------- 165 (246)
T ss_dssp ---CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESC-----------
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhh-----------
Confidence 0 001112223333333332 2347999999999999999999999999999999999988
Q ss_pred eeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCC
Q psy1288 557 IVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQ 636 (1012)
Q Consensus 557 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~ 636 (1012)
+ +|... .+.. ...
T Consensus 166 --------------~--------------lp~~~----------------------~~~~-----------------~~~ 178 (246)
T 4f21_A 166 --------------Y--------------LPAWD----------------------NFKG-----------------KIT 178 (246)
T ss_dssp --------------C--------------CTTHH----------------------HHST-----------------TCC
T ss_pred --------------c--------------cCccc----------------------cccc-----------------ccc
Confidence 0 01100 0000 000
Q ss_pred CCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHH
Q psy1288 637 GPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFY 716 (1012)
Q Consensus 637 ~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl 716 (1012)
. ...+.| +|++||..|+.||+..+.+....|+++ +..+++..|++.||+... +++.++.+||
T Consensus 179 ~----~~~~~P-vl~~HG~~D~vVp~~~~~~~~~~L~~~-------g~~v~~~~y~g~gH~i~~------~~l~~~~~fL 240 (246)
T 4f21_A 179 S----INKGLP-ILVCHGTDDQVLPEVLGHDLSDKLKVS-------GFANEYKHYVGMQHSVCM------EEIKDISNFI 240 (246)
T ss_dssp G----GGTTCC-EEEEEETTCSSSCHHHHHHHHHHHHTT-------TCCEEEEEESSCCSSCCH------HHHHHHHHHH
T ss_pred c----cccCCc-hhhcccCCCCccCHHHHHHHHHHHHHC-------CCCeEEEEECCCCCccCH------HHHHHHHHHH
Confidence 0 023556 999999999999999999999999998 889999999999998642 5667788999
Q ss_pred HHhCC
Q psy1288 717 LTSGP 721 (1012)
Q Consensus 717 ~~~l~ 721 (1012)
.+.++
T Consensus 241 ~k~l~ 245 (246)
T 4f21_A 241 AKTFK 245 (246)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 99875
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=127.05 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=90.6
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
..+.+.+.+ ||..+....+.... ..+..|+||++||..+... .|.. ....|.++||.|+.+|+||.|.....
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~~-- 90 (315)
T 4f0j_A 19 PVHYLDFTS-QGQPLSMAYLDVAP--KKANGRTILLMHGKNFCAG--TWER-TIDVLADAGYRVIAVDQVGFCKSSKP-- 90 (315)
T ss_dssp CCEEEEEEE-TTEEEEEEEEEECC--SSCCSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC--
T ss_pred cceeEEEec-CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCcch--HHHH-HHHHHHHCCCeEEEeecCCCCCCCCC--
Confidence 456666654 56666555444432 2356789999999765443 3443 34566667999999999998754221
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
......++++...+..+++. .+.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 91 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 147 (315)
T 4f0j_A 91 -----AHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNP 147 (315)
T ss_dssp -----SSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred -----CccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecC
Confidence 11234566777777666665 3456899999999999999999999999999998876
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-11 Score=127.89 Aligned_cols=119 Identities=11% Similarity=0.038 Sum_probs=84.4
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
...+|..+ .++.|.. ++.|+||++|||....... .+.......+.+.|+.|+.+|+|+..+.
T Consensus 10 ~~~~~~~~--~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~----------- 72 (274)
T 2qru_A 10 TLANGATV--TIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT----------- 72 (274)
T ss_dssp ECTTSCEE--EEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS-----------
T ss_pred cccCCeeE--EEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC-----------
Confidence 34456554 5566653 4579999999986433222 2333445567777999999999986542
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh---hCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN---QRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~~ 545 (1012)
.....++|+.++++|+.++.. ++++++++|+|+||.+++.++. ..+...++.+...|
T Consensus 73 ~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~ 132 (274)
T 2qru_A 73 KIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYG 132 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESC
T ss_pred CCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 112347899999999998743 2789999999999999988876 34666777777766
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=127.83 Aligned_cols=226 Identities=13% Similarity=0.066 Sum_probs=131.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCC-chhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEY-GERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~-g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
++.|.||++||..+... .|. .....|.++||.|+++|+||.|.. +...... .......+|+.++++++...
T Consensus 20 ~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~---~~~~~~~~d~~~~i~~l~~~-- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGSPN--DMN-FMARALQRSGYGVYVPLFSGHGTVEPLDILTK---GNPDIWWAESSAAVAHMTAK-- 91 (251)
T ss_dssp CSSEEEEEECCTTCCGG--GGH-HHHHHHHHTTCEEEECCCTTCSSSCTHHHHHH---CCHHHHHHHHHHHHHHHHTT--
T ss_pred CCCceEEEeCCCCCCHH--HHH-HHHHHHHHCCCEEEecCCCCCCCCChhhhcCc---ccHHHHHHHHHHHHHHHHHh--
Confidence 45678999999765443 343 345566667999999999998865 2222211 01112246777778887765
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCc
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPL 588 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~pl 588 (1012)
.++++++|+|+||.+++.++.++|+++++++...| ....... .+ +.
T Consensus 92 --~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p---~~~~~~~--------------------~~---------~~ 137 (251)
T 3dkr_A 92 --YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSP---ILPGKHH--------------------LV---------PG 137 (251)
T ss_dssp --CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCC---CCTTCBC--------------------HH---------HH
T ss_pred --cCCeEEEEechHHHHHHHHHHhCccceeeEEEecc---hhhccch--------------------hh---------HH
Confidence 67999999999999999999999999999888877 1110000 00 00
Q ss_pred chhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCC--cccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHH
Q psy1288 589 TQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYS--PLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSL 666 (1012)
Q Consensus 589 t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~s--P~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~ 666 (1012)
... ....+...........+...+ .......+.... +...+. ..+.| +|++||..|..+++..+.
T Consensus 138 ~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~~~P-~l~i~g~~D~~~~~~~~~ 204 (251)
T 3dkr_A 138 FLK--YAEYMNRLAGKSDESTQILAY----LPGQLAAIDQFATTVAADLN------LVKQP-TFIGQAGQDELVDGRLAY 204 (251)
T ss_dssp HHH--HHHHHHHHHTCCCCHHHHHHH----HHHHHHHHHHHHHHHHHTGG------GCCSC-EEEEEETTCSSBCTTHHH
T ss_pred HHH--HHHHHHhhcccCcchhhHHhh----hHHHHHHHHHHHHHHhcccc------ccCCC-EEEEecCCCcccChHHHH
Confidence 000 000000000000000000000 000000011000 111222 46777 999999999999998888
Q ss_pred HHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 667 KFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 667 ~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
.+...+.. ...+.+.+++++||....... ..+....+.+|+.+.
T Consensus 205 ~~~~~~~~--------~~~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~~ 248 (251)
T 3dkr_A 205 QLRDALIN--------AARVDFHWYDDAKHVITVNSA-HHALEEDVIAFMQQE 248 (251)
T ss_dssp HHHHHCTT--------CSCEEEEEETTCCSCTTTSTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcC--------CCCceEEEeCCCCcccccccc-hhHHHHHHHHHHHhh
Confidence 77766543 036789999999998765421 234456667888764
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-12 Score=144.88 Aligned_cols=144 Identities=13% Similarity=-0.028 Sum_probs=104.2
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC---C---------CCcC---hhHHHHHHhCCe
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL---Q---------PGFS---VTKIVFLRDFNG 463 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~---~---------~~~~---~~~~~~l~~~G~ 463 (1012)
..+..+.+.+.+.||..|+++++.|++. .++.|+||++||..+... . ..|. ..+...|+++||
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~ 160 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGY 160 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTC
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCC
Confidence 3466788889999999999999999864 567899999999644321 0 0111 124567778899
Q ss_pred EEEEEcCCCCCCCchhHHh----------hhh--cCCCc----chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHH
Q psy1288 464 IYAIPNIRGGGEYGERWHD----------GGR--LLNKQ----NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTA 527 (1012)
Q Consensus 464 ~v~~~d~RG~g~~g~~~~~----------~~~--~~~~~----~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~ 527 (1012)
+|+.+|+||.|+.+..-.. ... ...+. ....|+.+++++|.++..+|+++|+++|+|+||++++
T Consensus 161 ~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al 240 (391)
T 3g8y_A 161 VAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMM 240 (391)
T ss_dssp EEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHH
Confidence 9999999998865432100 000 00011 1236889999999999989999999999999999999
Q ss_pred HHHhhCCCceeEEEEccC
Q psy1288 528 ACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 528 ~~~~~~p~~f~a~v~~~~ 545 (1012)
.++.. ++.++++|+..+
T Consensus 241 ~~a~~-~~~i~a~v~~~~ 257 (391)
T 3g8y_A 241 VLGVL-DKDIYAFVYNDF 257 (391)
T ss_dssp HHHHH-CTTCCEEEEESC
T ss_pred HHHHc-CCceeEEEEccC
Confidence 88876 456788887666
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=131.42 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=130.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
+.|+||++||..+... .|. .....|.++||.|+.+|+||.|........ .......+|+.++++++...
T Consensus 39 ~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~~~----~~~~~~~~d~~~~i~~l~~~---- 107 (270)
T 3rm3_A 39 GPVGVLLVHGFTGTPH--SMR-PLAEAYAKAGYTVCLPRLKGHGTHYEDMER----TTFHDWVASVEEGYGWLKQR---- 107 (270)
T ss_dssp SSEEEEEECCTTCCGG--GTH-HHHHHHHHTTCEEEECCCTTCSSCHHHHHT----CCHHHHHHHHHHHHHHHHTT----
T ss_pred CCeEEEEECCCCCChh--HHH-HHHHHHHHCCCEEEEeCCCCCCCCcccccc----CCHHHHHHHHHHHHHHHHhh----
Confidence 4589999999765433 243 345667767999999999998865432211 11223356777788887765
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcch
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQ 590 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~ 590 (1012)
.++++++|+|+||.+++.++.++|+ ++++|...+ ..++.... ..+.....+..........+..
T Consensus 108 ~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~---~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 171 (270)
T 3rm3_A 108 CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINA---AVDIPAIA------------AGMTGGGELPRYLDSIGSDLKN 171 (270)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESC---CSCCHHHH------------HHSCC---CCSEEECCCCCCSC
T ss_pred CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcc---eecccccc------------cchhcchhHHHHHHHhCccccc
Confidence 6799999999999999999999999 999998877 11110000 0000000000000000000000
Q ss_pred hhhhhhhhhhccccccccccccccCCCCChHHHHHHHcC--CcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHH
Q psy1288 591 VVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGY--SPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKF 668 (1012)
Q Consensus 591 ~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~--sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~ 668 (1012)
. . .....+.. ........+... .....+. +.+.| +|+++|..|..+++..+.++
T Consensus 172 -------~--------~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~P-~lii~G~~D~~~~~~~~~~~ 227 (270)
T 3rm3_A 172 -------P--------D-VKELAYEK-TPTASLLQLARLMAQTKAKLD------RIVCP-ALIFVSDEDHVVPPGNADII 227 (270)
T ss_dssp -------T--------T-CCCCCCSE-EEHHHHHHHHHHHHHHHHTGG------GCCSC-EEEEEETTCSSSCTTHHHHH
T ss_pred -------c--------c-hHhhcccc-cChhHHHHHHHHHHHHHhhhh------hcCCC-EEEEECCCCcccCHHHHHHH
Confidence 0 0 00000000 000111111000 0011222 56778 99999999999999888777
Q ss_pred HHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 669 AATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 669 ~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
...+. +..+.+.+++++||....... ..+....+.+||.++.
T Consensus 228 ~~~~~---------~~~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~~~ 269 (270)
T 3rm3_A 228 FQGIS---------STEKEIVRLRNSYHVATLDYD-QPMIIERSLEFFAKHA 269 (270)
T ss_dssp HHHSC---------CSSEEEEEESSCCSCGGGSTT-HHHHHHHHHHHHHHHC
T ss_pred HHhcC---------CCcceEEEeCCCCcccccCcc-HHHHHHHHHHHHHhcC
Confidence 66653 335689999999999764322 1234556778888763
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-10 Score=125.07 Aligned_cols=185 Identities=15% Similarity=0.135 Sum_probs=122.2
Q ss_pred EEEEEeCCCCC-CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHH
Q psy1288 418 MFILSRKGAQL-DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDF 496 (1012)
Q Consensus 418 ~~l~~p~~~~~-~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~ 496 (1012)
+.+++|..... .++.|+||++||+.+.. ..|. .....|+++||.|+.+|+||+.. ..|+
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~~--~~~~-~~~~~l~~~G~~v~~~d~~~s~~-----------------~~~~ 93 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAGP--STYA-GLLSHWASHGFVVAAAETSNAGT-----------------GREM 93 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCCG--GGGH-HHHHHHHHHTCEEEEECCSCCTT-----------------SHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCCc--hhHH-HHHHHHHhCCeEEEEecCCCCcc-----------------HHHH
Confidence 67788875321 23779999999986533 2333 33456666799999999996411 1344
Q ss_pred HHHHHHHHHc---------CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccC
Q psy1288 497 QCAAEYLIAS---------GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNN 567 (1012)
Q Consensus 497 ~a~~~~l~~~---------~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~ 567 (1012)
...++++.+. ..++.++++++|+|+||.+++.++ .+.++++++...+
T Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~---------------------- 149 (258)
T 2fx5_A 94 LACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQP---------------------- 149 (258)
T ss_dssp HHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEE----------------------
T ss_pred HHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecC----------------------
Confidence 4555555442 245678999999999999988776 3567888887766
Q ss_pred cccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCC
Q psy1288 568 MFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYP 647 (1012)
Q Consensus 568 ~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P 647 (1012)
.. ... +... ..+ ..++.|
T Consensus 150 ---~~---------------------------------------~~~--~~~~------------~~~------~~i~~P 167 (258)
T 2fx5_A 150 ---YT---------------------------------------LGL--GHDS------------ASQ------RRQQGP 167 (258)
T ss_dssp ---CC---------------------------------------SST--TCCG------------GGG------GCCSSC
T ss_pred ---cc---------------------------------------ccc--ccch------------hhh------ccCCCC
Confidence 00 000 0000 011 145677
Q ss_pred cEEEEeeCCCCCCChHH-HHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 648 ATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 648 ~vLiihG~~D~~v~~~~-s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
+|++||..|..+++.. ..+++.+ . +.++.+.++++++|.+.....+ .....+.+||.+++.
T Consensus 168 -~lii~G~~D~~~~~~~~~~~~~~~---~-------~~~~~~~~~~g~~H~~~~~~~~--~~~~~i~~fl~~~l~ 229 (258)
T 2fx5_A 168 -MFLMSGGGDTIAFPYLNAQPVYRR---A-------NVPVFWGERRYVSHFEPVGSGG--AYRGPSTAWFRFQLM 229 (258)
T ss_dssp -EEEEEETTCSSSCHHHHTHHHHHH---C-------SSCEEEEEESSCCTTSSTTTCG--GGHHHHHHHHHHHHH
T ss_pred -EEEEEcCCCcccCchhhHHHHHhc---c-------CCCeEEEEECCCCCccccchHH--HHHHHHHHHHHHHhc
Confidence 9999999999999876 6555444 3 4578899999999998654332 344556789987764
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=132.66 Aligned_cols=249 Identities=13% Similarity=0.036 Sum_probs=142.9
Q ss_pred eEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChh--HHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 403 TKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT--KIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 403 ~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~--~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
.+.+.+.|+ .|..+.+++ |+.. + ++|+++||..+......|... ...++.+.|++|+.+|.+|++.+. .
T Consensus 6 ~~~~~~~s~~~~~~~~v~~--~p~~---~--~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~-~ 77 (280)
T 1dqz_A 6 VEYLQVPSASMGRDIKVQF--QGGG---P--HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYT-D 77 (280)
T ss_dssp EEEEEEEETTTTEEEEEEE--ECCS---S--SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTS-B
T ss_pred EEEEEEECcccCceeEEEE--cCCC---C--CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCcccc-C
Confidence 345556655 466666553 4432 2 588999998531122233221 234566679999999987654332 1
Q ss_pred HHhhhhc--CCCcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcce
Q psy1288 480 WHDGGRL--LNKQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRW 555 (1012)
Q Consensus 480 ~~~~~~~--~~~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~ 555 (1012)
|...... ......+.++. ....++.++-.+++++++|+|+|+||++++.++.++|++|+++++.+| ..+
T Consensus 78 ~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg---~~~---- 150 (280)
T 1dqz_A 78 WYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSG---FLN---- 150 (280)
T ss_dssp CSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESC---CCC----
T ss_pred CCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecC---ccc----
Confidence 1110000 00122333432 233344332235677999999999999999999999999999999988 111
Q ss_pred eeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCC
Q psy1288 556 LIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNI 635 (1012)
Q Consensus 556 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~ 635 (1012)
+... .... .+...+. ...+..+...||.+.. ..+...+|...+
T Consensus 151 ------------------~~~~----------~~~~--~~~~~~~---~~~~~~~~~~~g~~~~----~~~~~~~p~~~~ 193 (280)
T 1dqz_A 151 ------------------PSES----------WWPT--LIGLAMN---DSGGYNANSMWGPSSD----PAWKRNDPMVQI 193 (280)
T ss_dssp ------------------TTST----------THHH--HHHHHHH---HTTSCCHHHHHCSTTS----HHHHHTCTTTTH
T ss_pred ------------------ccCc----------chhh--hHHHHhh---hccCcCHHHhcCCCCc----hhhhhcCHHHHH
Confidence 0000 0000 0000000 0001111233555532 235566777554
Q ss_pred CCCCcccCC--CCCcEEEEeeCCCC--------------CCChHHHHHHHHHHHhhhccCCCCC-CcEEEEEeCCCCCCC
Q psy1288 636 QGPDELKGK--QYPATLLMTADHDD--------------RVSPVHSLKFAATLQEKLRDYPHQT-NPLLIRIETKAGHGG 698 (1012)
Q Consensus 636 ~~p~~~~~~--~~P~vLiihG~~D~--------------~v~~~~s~~~~~~L~~~~~~~~~~~-~~~~l~~~p~~gHg~ 698 (1012)
. +. +-+++++.||..|+ .+++.++.++.++|+++ + .++.+.++++++|.+
T Consensus 194 ~------~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~-------g~~~~~~~~~~~g~H~~ 260 (280)
T 1dqz_A 194 P------RLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAAD-------GGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp H------HHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCSEEEECCSCCCSSH
T ss_pred H------HHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCceEEEecCCCccCh
Confidence 3 22 22349999999997 46778889999999988 8 899999999999986
Q ss_pred CCccccchhhhhHHHHHHHHhC
Q psy1288 699 GKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 699 ~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
... ...+.+.+.|+.+.+
T Consensus 261 ~~w----~~~l~~~l~~l~~~l 278 (280)
T 1dqz_A 261 PYW----NEQLVAMKADIQHVL 278 (280)
T ss_dssp HHH----HHHHHHTHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHh
Confidence 321 234455667776653
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-11 Score=129.09 Aligned_cols=224 Identities=11% Similarity=0.024 Sum_probs=133.9
Q ss_pred ceEEEEEECCC-CceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh-CCeEEEEEcCCCCCCCc--
Q psy1288 402 ETKQVFYPSKD-GTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD-FNGIYAIPNIRGGGEYG-- 477 (1012)
Q Consensus 402 ~~~~v~~~s~D-G~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g-- 477 (1012)
..+.+.+.|++ |..+.++++.|+++...+++|+|++.||+.... .........+.+ .+.+|+.++++++..+.
T Consensus 12 ~~~~~~~~S~~~~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~---~~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~ 88 (278)
T 2gzs_A 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMD---RLDDELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (278)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHH---HCCHHHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceEEEEEEcCCCCceEEEEEECCCCCCCCCCCCEEEEeeChhHHH---HHHHHHHHHhccCCCeEEEEEcCCCCCcCccc
Confidence 35667788876 788999999999987677899877767653211 111223344443 46777778877543211
Q ss_pred ---hhHHhhh-h-----------cC-CCcchHhHHHH--HHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeE
Q psy1288 478 ---ERWHDGG-R-----------LL-NKQNVFDDFQC--AAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGA 539 (1012)
Q Consensus 478 ---~~~~~~~-~-----------~~-~~~~~~~D~~a--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a 539 (1012)
..+.... . .. .....+.+++. .+.++.++-.+++++++|+|+|+||++++.++.+ |++|++
T Consensus 89 ~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~ 167 (278)
T 2gzs_A 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (278)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCe
Confidence 1111100 0 00 01112222221 1122223334788899999999999999999999 999999
Q ss_pred EEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCC
Q psy1288 540 AIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPAN 619 (1012)
Q Consensus 540 ~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~ 619 (1012)
+++.+| ... | . .
T Consensus 168 ~~~~s~---~~~----------------------------------------------------------~----~---~ 179 (278)
T 2gzs_A 168 YYSASP---SLG----------------------------------------------------------R----G---Y 179 (278)
T ss_dssp EEEESG---GGS----------------------------------------------------------T----T---H
T ss_pred EEEeCc---chh----------------------------------------------------------c----C---c
Confidence 999888 000 0 0 0
Q ss_pred hHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCC--------ChHHHHHHHHHHHhhhccCCCCCCcEEEEEe
Q psy1288 620 SSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRV--------SPVHSLKFAATLQEKLRDYPHQTNPLLIRIE 691 (1012)
Q Consensus 620 ~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v--------~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~ 691 (1012)
......+..+.+. ..+.+++++.||..|..+ +..++.++..+|+++ +.++.+..+
T Consensus 180 ~~~~~~~~~~~~~----------~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~L~~~-------g~~~~~~~~ 242 (278)
T 2gzs_A 180 DALLSRVTAVEPL----------QFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDK-------GVNAVFWDF 242 (278)
T ss_dssp HHHHHHHHTSCTT----------TTTTCEEEEEECCC-----------CHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred chHHHHHHHhhcc----------CCCCCcEEEEecCccccccccchhhhhHHHHHHHHHHHHcC-------CCeeEEEEc
Confidence 0011111111110 012234999999999864 478889999999988 899999999
Q ss_pred CCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 692 TKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 692 p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
|+++|+... ...+.+.+.||.+.
T Consensus 243 ~g~~H~~~~-----~~~~~~~l~fl~~~ 265 (278)
T 2gzs_A 243 PNLGHGPMF-----NASFRQALLDISGE 265 (278)
T ss_dssp TTCCHHHHH-----HHHHHHHHHHHTTC
T ss_pred CCCCccchh-----HHHHHHHHHHHhhC
Confidence 999998532 23345566777654
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=128.70 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=85.6
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCC-CCCchhHH
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGG-GEYGERWH 481 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~-g~~g~~~~ 481 (1012)
.+...+.+.||.+|.++.+.|.+. ...+.|+||++||...... .|.. ....|.++||.|+.+|+||+ |......
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~~~--~~~~-~~~~L~~~G~~Vi~~D~rGh~G~S~~~~- 81 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARRMD--HFAG-LAEYLSTNGFHVFRYDSLHHVGLSSGSI- 81 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGGGG--GGHH-HHHHHHTTTCCEEEECCCBCC--------
T ss_pred ceEEEEEcCCCCEEEEEEecCccc-CCCCCCEEEEecCCccCch--HHHH-HHHHHHHCCCEEEEeeCCCCCCCCCCcc-
Confidence 345556778999999888876531 1234689999999754332 3443 35667767999999999997 5432111
Q ss_pred hhhhcCCC-cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 482 DGGRLLNK-QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 482 ~~~~~~~~-~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.... ....+|+.+.++++... ...++.++|+|+||.+++.++.+ | .+.++|...+
T Consensus 82 ----~~~~~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~ 137 (305)
T 1tht_A 82 ----DEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVG 137 (305)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESC
T ss_pred ----cceehHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecC
Confidence 1111 12246777777877643 34689999999999999988887 6 6778777666
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.3e-11 Score=135.33 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=88.4
Q ss_pred ceEEEEEECCC--Cc--eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC---------CCcChhHHHHHHhCCeEEEEE
Q psy1288 402 ETKQVFYPSKD--GT--KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ---------PGFSVTKIVFLRDFNGIYAIP 468 (1012)
Q Consensus 402 ~~~~v~~~s~D--G~--~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~---------~~~~~~~~~~l~~~G~~v~~~ 468 (1012)
...++.+.+.+ |. .+.++++.|.+....++.|+|+++||+.+.... ..+.. ....+.++||.|+.+
T Consensus 45 ~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~~V~~~ 123 (397)
T 3h2g_A 45 RVAEFTYATIGVEGEPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDP-LVTRLASQGYVVVGS 123 (397)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSH-HHHTTGGGTCEEEEE
T ss_pred EEEEEEEEecCCCCCeEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHH-HHHHHHHCCCEEEEe
Confidence 34556665543 43 578899999876556789999999998765432 11333 345566679999999
Q ss_pred cCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc-CCCCCCcEEEEecChHHHHHHHHHhh-CC----C-ceeEEE
Q psy1288 469 NIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS-GYTQSSRLAIQGGSNGGLLTAACINQ-RP----D-LFGAAI 541 (1012)
Q Consensus 469 d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~-~p----~-~f~a~v 541 (1012)
|+||.|..+...............+.|....+..+.+. +..++++++++|+|+||.+++.++.. .+ + .+.+++
T Consensus 124 D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~ 203 (397)
T 3h2g_A 124 DYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASA 203 (397)
T ss_dssp CCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEE
T ss_pred cCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEe
Confidence 99998864311100000000012344555555555544 55557899999999999998877522 12 2 456666
Q ss_pred EccC
Q psy1288 542 VQVG 545 (1012)
Q Consensus 542 ~~~~ 545 (1012)
...+
T Consensus 204 ~~~~ 207 (397)
T 3h2g_A 204 PISG 207 (397)
T ss_dssp EESC
T ss_pred cccc
Confidence 6655
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-11 Score=121.64 Aligned_cols=186 Identities=15% Similarity=0.036 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCCCCCCCcC-hhHHHHHHhC--CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFS-VTKIVFLRDF--NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~-~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
|+||++||-.+... .+. ....+++..+ ++.|+.+|++|.+ ..+ ...++.++.. .
T Consensus 3 ptIl~lHGf~ss~~--s~k~~~l~~~~~~~~~~~~v~~pdl~~~g---~~~----------------~~~l~~~~~~--~ 59 (202)
T 4fle_A 3 STLLYIHGFNSSPS--SAKATTFKSWLQQHHPHIEMQIPQLPPYP---AEA----------------AEMLESIVMD--K 59 (202)
T ss_dssp CEEEEECCTTCCTT--CHHHHHHHHHHHHHCTTSEEECCCCCSSH---HHH----------------HHHHHHHHHH--H
T ss_pred cEEEEeCCCCCCCC--ccHHHHHHHHHHHcCCCcEEEEeCCCCCH---HHH----------------HHHHHHHHHh--c
Confidence 79999999432221 221 1233455544 4899999999864 222 2223333332 2
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcc
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLT 589 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt 589 (1012)
.+++++++|+|+||++++.++.+.|.....++...+ ..+. +
T Consensus 60 ~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~---~~~~---------------------~--------------- 100 (202)
T 4fle_A 60 AGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVR---PFEL---------------------L--------------- 100 (202)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSS---HHHH---------------------G---------------
T ss_pred CCCcEEEEEEChhhHHHHHHHHHhcccchheeeccc---hHHH---------------------H---------------
Confidence 457899999999999999999999887666554443 0000 0
Q ss_pred hhhhhhhhhhhccccccccccccccCCC--CChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHH
Q psy1288 590 QVVHKVLDMLKFNKFTIGYFWESDYGSP--ANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLK 667 (1012)
Q Consensus 590 ~~~~~~~d~~~~~~~~~g~~~~~~~g~p--~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~ 667 (1012)
........ . ...+.+ .......... .....+. ..+.| +|++||..|..||+.++.+
T Consensus 101 ------~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~P-~LiihG~~D~~Vp~~~s~~ 158 (202)
T 4fle_A 101 ------SDYLGENQ-----N--PYTGQKYVLESRHIYDLK--AMQIEKL------ESPDL-LWLLQQTGDEVLDYRQAVA 158 (202)
T ss_dssp ------GGGCEEEE-----C--TTTCCEEEECHHHHHHHH--TTCCSSC------SCGGG-EEEEEETTCSSSCHHHHHH
T ss_pred ------HHhhhhhc-----c--ccccccccchHHHHHHHH--hhhhhhh------ccCce-EEEEEeCCCCCCCHHHHHH
Confidence 00000000 0 000000 0111111122 2222233 56777 9999999999999998876
Q ss_pred HHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 668 FAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 668 ~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
++. . +.+.+.++++|++... -+.+..+.+||.-..
T Consensus 159 l~~----~----------~~l~i~~g~~H~~~~~----~~~~~~I~~FL~~a~ 193 (202)
T 4fle_A 159 YYT----P----------CRQTVESGGNHAFVGF----DHYFSPIVTFLGLAT 193 (202)
T ss_dssp HTT----T----------SEEEEESSCCTTCTTG----GGGHHHHHHHHTCCC
T ss_pred Hhh----C----------CEEEEECCCCcCCCCH----HHHHHHHHHHHhhhh
Confidence 542 1 2578889999987432 134556778987443
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=116.68 Aligned_cols=104 Identities=14% Similarity=0.029 Sum_probs=69.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
++.|+||++||..+......+ ......+.++||.|+.+|+||.|.... ........+++...++++.+..
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~-~~~~~~l~~~g~~v~~~d~~g~g~s~~-------~~~~~~~~~~~~~~~~~~~~~~-- 71 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKV-TALAEVAERLGWTHERPDFTDLDARRD-------LGQLGDVRGRLQRLLEIARAAT-- 71 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHH-HHHHHHHHHTTCEEECCCCHHHHTCGG-------GCTTCCHHHHHHHHHHHHHHHH--
T ss_pred CCCcEEEEEeCCCCCccHHHH-HHHHHHHHHCCCEEEEeCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHhcC--
Confidence 356899999997643321111 134566777899999999998654211 1111122334444556665543
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+.++++++|+|+||.+++.++.++| +++++...+
T Consensus 72 ~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~ 105 (176)
T 2qjw_A 72 EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVP 105 (176)
T ss_dssp TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESC
T ss_pred CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECC
Confidence 3478999999999999999998887 788888777
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-10 Score=128.37 Aligned_cols=203 Identities=9% Similarity=-0.014 Sum_probs=130.0
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcCh------hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh----
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSV------TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG---- 484 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~------~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~---- 484 (1012)
.+.+..+.|.. .+.|.||++||+..... .|.. .+...|.++||.|+.+|+||.|.....-....
T Consensus 49 ~~~~~~~~p~~----~~~~~vvl~HG~g~~~~--~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~ 122 (328)
T 1qlw_A 49 QMYVRYQIPQR----AKRYPITLIHGCCLTGM--TWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 122 (328)
T ss_dssp CEEEEEEEETT----CCSSCEEEECCTTCCGG--GGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred eEEEEEEccCC----CCCccEEEEeCCCCCCC--ccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccc
Confidence 45555566654 23467999999764332 3332 34566666899999999999875532211000
Q ss_pred ------------------------hc-CCC---------cchHhH------------------HHHHHHHHHHcCCCCCC
Q psy1288 485 ------------------------RL-LNK---------QNVFDD------------------FQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 485 ------------------------~~-~~~---------~~~~~D------------------~~a~~~~l~~~~~~d~~ 512 (1012)
.. .+. ...+++ +.+.+..+++.- .
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~ 198 (328)
T 1qlw_A 123 GKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----D 198 (328)
T ss_dssp TSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----T
T ss_pred cccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----C
Confidence 00 000 000222 444455555432 3
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhh
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVV 592 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~ 592 (1012)
++.++|+|+||.+++.++.++|++++++|+..| . .
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p---~----------------------~-------------------- 233 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEP---G----------------------E-------------------- 233 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESC---S----------------------C--------------------
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCC---C----------------------C--------------------
Confidence 799999999999999999999999999998877 0 0
Q ss_pred hhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCCh-----HHHHH
Q psy1288 593 HKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSP-----VHSLK 667 (1012)
Q Consensus 593 ~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~-----~~s~~ 667 (1012)
. . ++ .... ...+.| +|++||.+|..+++ ..+.+
T Consensus 234 -----------------------~-~-----------~~-~~~~-----~~~~~P-vLii~G~~D~~~p~~~~~~~~~~~ 271 (328)
T 1qlw_A 234 -----------------------C-P-----------KP-EDVK-----PLTSIP-VLVVFGDHIEEFPRWAPRLKACHA 271 (328)
T ss_dssp -----------------------C-C-----------CG-GGCG-----GGTTSC-EEEEECSSCTTCTTTHHHHHHHHH
T ss_pred -----------------------C-C-----------CH-HHHh-----hccCCC-EEEEeccCCccccchhhHHHHHHH
Confidence 0 0 00 0001 023567 99999999999996 78888
Q ss_pred HHHHHHhhhccCCCCCCcEEEEEeCCCC-----CCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 668 FAATLQEKLRDYPHQTNPLLIRIETKAG-----HGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 668 ~~~~L~~~~~~~~~~~~~~~l~~~p~~g-----Hg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+.+.+.++ +..+.++.++++| |......+ ..+....+.+||.+++..
T Consensus 272 ~~~~l~~~-------g~~~~~~~~~~~gi~G~~H~~~~~~~-~~~~~~~i~~fl~~~~~~ 323 (328)
T 1qlw_A 272 FIDALNAA-------GGKGQLMSLPALGVHGNSHMMMQDRN-NLQVADLILDWIGRNTAK 323 (328)
T ss_dssp HHHHHHHT-------TCCEEEEEGGGGTCCCCCTTGGGSTT-HHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHh-------CCCceEEEcCCCCcCCCcccchhccC-HHHHHHHHHHHHHhcccC
Confidence 88999887 7889999999665 87654331 124456677899887643
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-11 Score=134.69 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=137.2
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCe----EEEEEcCCCCCCC
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG----IYAIPNIRGGGEY 476 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~----~v~~~d~RG~g~~ 476 (1012)
..+.+.+.|. .|..+.++++.|++.. .+++|+|+++||+...... .+ ......|.++|+ +|+.+|++|+...
T Consensus 167 ~v~~~~~~S~~~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~~-~~-~~~~~~l~~~g~~~p~iVV~~d~~~~~~r 243 (403)
T 3c8d_A 167 PAKEIIWKSERLKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PV-WPVLTSLTHRQQLPPAVYVLIDAIDTTHR 243 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCCCEEEESSHHHHHHTS-CC-HHHHHHHHHTTSSCSCEEEEECCCSHHHH
T ss_pred ceEEEEEEccccCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhcC-cH-HHHHHHHHHcCCCCCeEEEEECCCCCccc
Confidence 4566777775 6788999999998753 5679999999996321111 11 123445555676 4999998763211
Q ss_pred chhHHhhhhcCCCcchHhHHH--HHHHHHHHc-C-CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccC
Q psy1288 477 GERWHDGGRLLNKQNVFDDFQ--CAAEYLIAS-G-YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552 (1012)
Q Consensus 477 g~~~~~~~~~~~~~~~~~D~~--a~~~~l~~~-~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~ 552 (1012)
. .+ . .....+.+++ ..+.++.++ . ..|+++++|+|+|+||++++.++.++|++|+++++.+| ..++
T Consensus 244 ~---~~--~--~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg---~~~~ 313 (403)
T 3c8d_A 244 A---HE--L--PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSG---SYWW 313 (403)
T ss_dssp H---HH--S--SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESC---CTTT
T ss_pred c---cc--C--CChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEecc---cccc
Confidence 0 01 0 1122334433 345555554 2 35789999999999999999999999999999999988 1100
Q ss_pred cceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcc
Q psy1288 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPL 632 (1012)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~ 632 (1012)
...+.+......+.+... +
T Consensus 314 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~-~- 332 (403)
T 3c8d_A 314 -----------------------------------------------------------PHRGGQQEGVLLEKLKAG-E- 332 (403)
T ss_dssp -----------------------------------------------------------TCTTSSSCCHHHHHHHTT-S-
T ss_pred -----------------------------------------------------------CCCCCCcHHHHHHHHHhc-c-
Confidence 000000011111112211 0
Q ss_pred cCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHH
Q psy1288 633 HNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPV 712 (1012)
Q Consensus 633 ~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~ 712 (1012)
.. ..+.| ++++||..|..+ +.++.++.++|+++ +.++.+..+++ +|++.. ....+.+.
T Consensus 333 --~~------~~~~~-i~l~~G~~D~~~-~~~~~~l~~~L~~~-------G~~v~~~~~~G-gH~~~~----w~~~l~~~ 390 (403)
T 3c8d_A 333 --VS------AEGLR-IVLEAGIREPMI-MRANQALYAQLHPI-------KESIFWRQVDG-GHDALC----WRGGLMQG 390 (403)
T ss_dssp --SC------CCSCE-EEEEEESSCHHH-HHHHHHHHHHTGGG-------TTSEEEEEESC-CSCHHH----HHHHHHHH
T ss_pred --cc------CCCce-EEEEeeCCCchh-HHHHHHHHHHHHhC-------CCCEEEEEeCC-CCCHHH----HHHHHHHH
Confidence 11 23444 999999988643 67888899999888 88999999998 598532 12455667
Q ss_pred HHHHHHhC
Q psy1288 713 IYFYLTSG 720 (1012)
Q Consensus 713 ~~fl~~~l 720 (1012)
+.||.+..
T Consensus 391 l~~l~~~~ 398 (403)
T 3c8d_A 391 LIDLWQPL 398 (403)
T ss_dssp HHHHHGGG
T ss_pred HHHHhccc
Confidence 77887653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-09 Score=117.69 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=141.6
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCC-CceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLD-GEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~-g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
.+|+|+++++.. + ..|++.+..+ ++...++... ....+..++|||||++|++.....+ ....||+++
T Consensus 49 ~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~ 116 (297)
T 2ojh_A 49 WSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDTGF-----ATICNNDHGISPDGALYAISDKVEF-GKSAIYLLP 116 (297)
T ss_dssp ECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCCTT-----CCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEE
T ss_pred ECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEecccc-----ccccccceEECCCCCEEEEEEeCCC-CcceEEEEE
Confidence 358999988864 1 2678888777 6666655411 1235678999999999999885432 245899999
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec---------cccceeeeeeecCCCE
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV---------NVAPITSQYITNEGPQ 260 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~---------~~~~i~~~~~s~dg~~ 260 (1012)
+++++...+..... ...++|+|||+.|+|+..... ...++..... ....+....|+|+|+.
T Consensus 117 ~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 117 STGGTPRLMTKNLP-SYWHGWSPDGKSFTYCGIRDQ---------VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp TTCCCCEECCSSSS-EEEEEECTTSSEEEEEEEETT---------EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred CCCCceEEeecCCC-ccceEECCCCCEEEEEECCCC---------ceEEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence 99888655443332 466899999999998764311 1112211110 0022334569999999
Q ss_pred EEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcC--------ceEEEEEEecCCCc
Q psy1288 261 FVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHH--------VKNVMHLHDLASGK 331 (1012)
Q Consensus 261 l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~l~~~dl~~G~ 331 (1012)
|++.+..+ ...+|+.+++.... ...+.... . ......+ .+++.|++....+ +..+|+++++.+++
T Consensus 187 l~~~~~~~-~~~~i~~~~~~~~~---~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 187 IYFNSSRT-GQMQIWRVRVDGSS---VERITDSA-Y-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp EEEEECTT-SSCEEEEEETTSSC---EEECCCCS-E-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred EEEEecCC-CCccEEEECCCCCC---cEEEecCC-c-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 99988644 36789999876544 33333322 2 2222333 4556777666553 34789999997665
Q ss_pred eeeeecC--CceEEEeecccccCcEEEEEecCC
Q psy1288 332 HLYTFPL--DVGTIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 332 ~~~~l~~--~~~~v~~~~~spdg~~l~~~~ss~ 362 (1012)
....... ....+..+.|+||++.|++..+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 261 VETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 4333322 133455678999999998876543
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=118.46 Aligned_cols=184 Identities=11% Similarity=-0.017 Sum_probs=115.3
Q ss_pred CCcEEEEEcCCCCCCC-CCCcChhHHHHHHhC-CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 431 NNPCILYGYGGFAVSL-QPGFSVTKIVFLRDF-NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~-G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
+.|.||++||..+... ...|.......|.++ ||.|+.+|+||.... +....++.+++.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~~------------------~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITA------------------RESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTTC------------------CHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCcc------------------cHHHHHHHHHHHhC
Confidence 4689999999865432 223444345667766 999999999984311 12223344444322
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCc
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPL 588 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~pl 588 (1012)
. .+++.++|+|+||.+++.++.++| ++++|...+ ... ...
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~---~~~------------------------~~~---------- 104 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSA---YTS------------------------DLG---------- 104 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESC---CSS------------------------CTT----------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcC---Ccc------------------------ccc----------
Confidence 2 378999999999999999999988 888888877 100 000
Q ss_pred chhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHH
Q psy1288 589 TQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKF 668 (1012)
Q Consensus 589 t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~ 668 (1012)
. .... .. .| +..+... +.+. ....| +|++||..|..+++..+..+
T Consensus 105 -~----~~~~--~~------~~---~~~~~~~---~~~~---------------~~~~p-~lii~G~~D~~vp~~~~~~~ 149 (194)
T 2qs9_A 105 -D----ENER--AS------GY---FTRPWQW---EKIK---------------ANCPY-IVQFGSTDDPFLPWKEQQEV 149 (194)
T ss_dssp -C----HHHH--HT------ST---TSSCCCH---HHHH---------------HHCSE-EEEEEETTCSSSCHHHHHHH
T ss_pred -h----hhhH--HH------hh---hcccccH---HHHH---------------hhCCC-EEEEEeCCCCcCCHHHHHHH
Confidence 0 0000 00 00 1111111 1111 12334 99999999999999998887
Q ss_pred HHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 669 AATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 669 ~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.+.+ .. .+.+++++||...... -+.+..+++|+.+....
T Consensus 150 ~~~~-~~-----------~~~~~~~~gH~~~~~~---p~~~~~~~~fl~~~~~~ 188 (194)
T 2qs9_A 150 ADRL-ET-----------KLHKFTDCGHFQNTEF---HELITVVKSLLKVPALE 188 (194)
T ss_dssp HHHH-TC-----------EEEEESSCTTSCSSCC---HHHHHHHHHHHTCCCCC
T ss_pred HHhc-CC-----------eEEEeCCCCCccchhC---HHHHHHHHHHHHhhhhh
Confidence 7776 33 6888899999876432 35566777899876543
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-10 Score=120.53 Aligned_cols=120 Identities=9% Similarity=-0.048 Sum_probs=82.3
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChh-HHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT-KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
.||.+|.+..+.|.+ .++.|+||++||..+... .|... ....+.++||.|+.+|.||.|...... . ....
T Consensus 14 ~~g~~l~~~~~~p~~---~~~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~-~~~~ 84 (210)
T 1imj_A 14 VQGQALFFREALPGS---GQARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAA---A-PAPI 84 (210)
T ss_dssp ETTEEECEEEEECSS---SCCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSC---C-SSCT
T ss_pred eCCeEEEEEEeCCCC---CCCCceEEEECCCCCccc--eeecchhHHHHHHCCCeEEEecCCCCCCCCCCC---C-cchh
Confidence 389999999988865 346789999999764332 23321 355677789999999999876432111 0 0001
Q ss_pred cchH--hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVF--DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~--~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.... +|+...++.+ +.+++.++|+|+||.+++.++.++|+.+++++...+
T Consensus 85 ~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~ 136 (210)
T 1imj_A 85 GELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAP 136 (210)
T ss_dssp TSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESC
T ss_pred hhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCC
Confidence 1111 3444444332 346899999999999999999999999999998877
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.2e-10 Score=117.08 Aligned_cols=113 Identities=18% Similarity=0.104 Sum_probs=80.7
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+...||.+|.+.... +.|.||++||..+... .|. .....|. +||.|+.+|.||.|.....
T Consensus 7 ~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~~~--~~~-~~~~~l~-~~~~vi~~d~~G~G~S~~~-------- 66 (262)
T 3r0v_A 7 VPSSDGTPIAFERSG--------SGPPVVLVGGALSTRA--GGA-PLAERLA-PHFTVICYDRRGRGDSGDT-------- 66 (262)
T ss_dssp EECTTSCEEEEEEEE--------CSSEEEEECCTTCCGG--GGH-HHHHHHT-TTSEEEEECCTTSTTCCCC--------
T ss_pred EEcCCCcEEEEEEcC--------CCCcEEEECCCCcChH--HHH-HHHHHHh-cCcEEEEEecCCCcCCCCC--------
Confidence 456789888866542 2468999999765442 233 3455666 6999999999998754321
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....++++...+..+++.- + +++.++|+|+||.+++.++.++| .+++++...+
T Consensus 67 -~~~~~~~~~~~~~~~~~~l--~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~ 119 (262)
T 3r0v_A 67 -PPYAVEREIEDLAAIIDAA--G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEP 119 (262)
T ss_dssp -SSCCHHHHHHHHHHHHHHT--T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECC
T ss_pred -CCCCHHHHHHHHHHHHHhc--C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcC
Confidence 1233555555555555542 3 68999999999999999999999 8999888876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-10 Score=127.77 Aligned_cols=244 Identities=7% Similarity=-0.025 Sum_probs=145.4
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCC-CCCCCCceEe------------eeEEECCCCcEEEEEEeC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPN-NLSDDGTVSL------------GSYSFSEDGKTLAYCLSS 177 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n-~la~~g~~~i------------~~~~~SPDGk~iAy~~~~ 177 (1012)
++|||++++|..... .||+.+..+++.+.++... .+..++..-+ ..+.|||||++++|....
T Consensus 88 ~spdg~~l~~~~~~~-----~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 162 (396)
T 3c5m_A 88 ISTDERAFFYVKNEL-----NLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY 162 (396)
T ss_dssp ECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred ECCCCCEEEEEEcCC-----cEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence 579999999987543 6999998888877776622 1111110000 014678888877765421
Q ss_pred CCCceEEEEEEECCCCceeceeecceeeeeeEEee-CCCeEEEEecCCCCCcccCCCCCceEEEEeec--------c---
Q psy1288 178 SGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH-DHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV--------N--- 245 (1012)
Q Consensus 178 ~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSp-DG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~--------~--- 245 (1012)
.+.....|+++|+++|+.+.+.........+.||| ||+.|+|.+...... ....++..... .
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~------~~~~l~~~d~~~~~~~~l~~~~~ 236 (396)
T 3c5m_A 163 HTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDL------VDARMWLVNEDGSNVRKIKEHAE 236 (396)
T ss_dssp HTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSS------CSCCCEEEETTSCCCEESSCCCT
T ss_pred cCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCC------CCceEEEEECCCCceeEeeccCC
Confidence 11234689999999998776554444457899999 899999987532100 00111111100 0
Q ss_pred ccceeeeeeecCCCEEEEEECCCC-CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEE--------
Q psy1288 246 VAPITSQYITNEGPQFVFKTNKDA-PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYI-------- 315 (1012)
Q Consensus 246 ~~~i~~~~~s~dg~~l~~~tn~~~-~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~-------- 315 (1012)
...+....|+|||+.|++.++.+. ....|+.+|+.+++ .+.+... +... ..... +++.+++...
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~-~~~~--~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVM-PPCS--HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEEC-CSEE--EEEECSSSSEEEEEECCC------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeC-CCCC--CCccCCCCceEEEecCCcceeecc
Confidence 011234569999999999876533 23459999997765 2333322 1211 22234 6565544321
Q ss_pred -----cCceEEEEEEecCCCceeeeecCCce-----------EEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 316 -----HHVKNVMHLHDLASGKHLYTFPLDVG-----------TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 316 -----~~g~~~l~~~dl~~G~~~~~l~~~~~-----------~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++...|+++++.+++. ..++.... ....+.|+|||+.|+|..+.. ....||.+|+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~ 382 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADV 382 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEEC
T ss_pred ccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEE
Confidence 12457899999976654 33432221 123467899999999887654 4567999998
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=117.88 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=75.4
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+...||.+|.+... + ..+.||++||...... .|... ...|.++||.|+.+|.||.|.....
T Consensus 3 ~~~~~g~~l~y~~~---G-----~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~-------- 63 (271)
T 3ia2_A 3 FVAKDGTQIYFKDW---G-----SGKPVLFSHGWLLDAD--MWEYQ-MEYLSSRGYRTIAFDRRGFGRSDQP-------- 63 (271)
T ss_dssp EECTTSCEEEEEEE---S-----SSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTSCCC--------
T ss_pred EEcCCCCEEEEEcc---C-----CCCeEEEECCCCCcHH--HHHHH-HHHHHhCCceEEEecCCCCccCCCC--------
Confidence 56789999876554 1 2356888999764432 34443 3456557999999999998754321
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh-hCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN-QRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~ 545 (1012)
.....++++...+..+++. .+.+++.++|+|+||.+++..+. ..|+++.+++...+
T Consensus 64 ~~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~ 120 (271)
T 3ia2_A 64 WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGA 120 (271)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEcc
Confidence 1112334444333333333 23468999999999986665554 45889998888765
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=130.44 Aligned_cols=132 Identities=13% Similarity=0.051 Sum_probs=85.2
Q ss_pred EECCCCceEEEEEEEeCC---CCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHH----hCCe---EEEEEcCCCCCCCc
Q psy1288 408 YPSKDGTKIPMFILSRKG---AQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLR----DFNG---IYAIPNIRGGGEYG 477 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~---~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~----~~G~---~v~~~d~RG~g~~g 477 (1012)
+.+.||.+|.+..+.|.+ ..+.++.|+||++||..+... .|... ...|. +.|| .|+++|+||.|..
T Consensus 25 ~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~--~~~~~-~~~L~~~~~~~G~~~~~vi~~D~~G~G~S- 100 (398)
T 2y6u_A 25 LCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV--VWEYY-LPRLVAADAEGNYAIDKVLLIDQVNHGDS- 100 (398)
T ss_dssp SSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG--GGGGG-GGGSCCCBTTTTEEEEEEEEECCTTSHHH-
T ss_pred ccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH--HHHHH-HHHHHHhhhhcCcceeEEEEEcCCCCCCC-
Confidence 456799999999888865 122345689999999765443 34333 23344 3489 9999999996532
Q ss_pred hhHHhhhhcCCCcchHhHHHHHHHHHHHc-C---CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 478 ERWHDGGRLLNKQNVFDDFQCAAEYLIAS-G---YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 478 ~~~~~~~~~~~~~~~~~D~~a~~~~l~~~-~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.............+.+....+..+++. . ..++.++.++|+|+||.+++.++.++|++++++|...+
T Consensus 101 --~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 170 (398)
T 2y6u_A 101 --AVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEP 170 (398)
T ss_dssp --HHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESC
T ss_pred --CCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecc
Confidence 111100011122333443333333332 1 13444599999999999999999999999999999877
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.12 E-value=8.3e-10 Score=124.28 Aligned_cols=129 Identities=16% Similarity=0.076 Sum_probs=80.2
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-----------CcChhHH--HHHHhCCeEEEEEcCCC--CCCC
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-----------GFSVTKI--VFLRDFNGIYAIPNIRG--GGEY 476 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-----------~~~~~~~--~~l~~~G~~v~~~d~RG--~g~~ 476 (1012)
||.+|.+....+.. ....|.||++||..+..... .|..... ..+...||.|+.+|.|| .|..
T Consensus 29 ~g~~l~y~~~g~~~---~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s 105 (366)
T 2pl5_A 29 SPVVIAYETYGTLS---SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSS 105 (366)
T ss_dssp SSEEEEEEEEECCC---TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cCceeeEEeccCcC---CCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCC
Confidence 45566655554332 12357899999986554311 3433211 12324699999999999 5543
Q ss_pred chhHHhhh--h---cCCCcchHhHHHHHHHHHHHcCCCCCCcE-EEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 477 GERWHDGG--R---LLNKQNVFDDFQCAAEYLIASGYTQSSRL-AIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 477 g~~~~~~~--~---~~~~~~~~~D~~a~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+..-.... . .......++++.+.+..+++. ...+++ .++|+|+||.+++.++.++|++++++|...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 178 (366)
T 2pl5_A 106 GPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAS 178 (366)
T ss_dssp STTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred CCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEecc
Confidence 22100000 0 000123566666666666654 245688 7999999999999999999999999998877
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-10 Score=114.61 Aligned_cols=95 Identities=13% Similarity=-0.047 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||..+.... .|.......|.++||.|+.+|+|.+.. ..++++...+..+++. . .
T Consensus 4 ~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~--~-~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHT--L-H 64 (192)
T ss_dssp CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGG--C-C
T ss_pred CCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHh--c-c
Confidence 4789999997654321 344443345655799999999993221 1244555444444443 2 5
Q ss_pred CcEEEEecChHHHHHHHHHhhCCC--ceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPD--LFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~~ 545 (1012)
+++.++|+|+||.+++.++.++|+ .+++++...+
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~ 100 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSG 100 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETC
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEecc
Confidence 789999999999999999999999 8999998877
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=132.79 Aligned_cols=144 Identities=10% Similarity=-0.071 Sum_probs=105.4
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC------------CCCcC---hhHHHHHHhCCe
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL------------QPGFS---VTKIVFLRDFNG 463 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~------------~~~~~---~~~~~~l~~~G~ 463 (1012)
+.+..+.+.+.+.||.+|.++++.|++. .++.|+||++||+.+... ...|. ......|+++||
T Consensus 88 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy 165 (398)
T 3nuz_A 88 EGYRLEKWEFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGY 165 (398)
T ss_dssp SSEEEEEEEECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTC
T ss_pred CCEEEEEEEEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCC
Confidence 3466788899999999999999999864 567899999999754321 11222 134567888899
Q ss_pred EEEEEcCCCCCCCchhHHhh----------------hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHH
Q psy1288 464 IYAIPNIRGGGEYGERWHDG----------------GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTA 527 (1012)
Q Consensus 464 ~v~~~d~RG~g~~g~~~~~~----------------~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~ 527 (1012)
+|+.+|+||.|+.+...... ...........|..++++||.++..+|+++|+++|+|+||++++
T Consensus 166 ~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~ 245 (398)
T 3nuz_A 166 IAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMM 245 (398)
T ss_dssp EEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHH
T ss_pred EEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHH
Confidence 99999999988654322100 00000111346889999999999889999999999999999998
Q ss_pred HHHhhCCCceeEEEEccC
Q psy1288 528 ACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 528 ~~~~~~p~~f~a~v~~~~ 545 (1012)
.++... +.++++|+.++
T Consensus 246 ~~aa~~-~~i~a~v~~~~ 262 (398)
T 3nuz_A 246 VLGTLD-TSIYAFVYNDF 262 (398)
T ss_dssp HHHHHC-TTCCEEEEESC
T ss_pred HHHhcC-CcEEEEEEecc
Confidence 888774 46777777655
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-08 Score=107.91 Aligned_cols=219 Identities=10% Similarity=0.028 Sum_probs=143.3
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCC---------
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGS--------- 180 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~--------- 180 (1012)
..+.+|+++||..... ...||+++..+...++|++ + ..--++|||++|.|+....+.
T Consensus 20 ~~~~~g~~iy~~n~~d---~~~ly~~~~dg~~~~~l~~-------~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~ 85 (302)
T 3s25_A 20 LFCESDGEVFFSNTND---NGRLYAMNIDGSNIHKLSN-------D----TAMYINADKNYVYYVRNNNQKITSQTFFSY 85 (302)
T ss_dssp CEEEETTEEEEEEGGG---TTEEEEEETTSCSCEEEEE-------E----EEEEEEECSSEEEEEEECC------CCSSC
T ss_pred EEEEeCCEEEEEeCCC---CceEEEEcCCCCCCEEccC-------C----ceeeEEEcCCEEEEEECCCCcccccceecc
Confidence 3458999999976532 3589999998888888877 2 134678999999999877542
Q ss_pred ceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEec-CCCCCcccCCCCCceEEEEeeccc---cce---eeee
Q psy1288 181 DWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQ-EPKSKSKKHSKKNRSSAYHLTVNV---API---TSQY 253 (1012)
Q Consensus 181 ~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~-~~~~~g~~~~~~~~~l~~~~~~~~---~~i---~~~~ 253 (1012)
....||.+++++++..+++... ...|+++|++|||+.. ... ...+ +....+. +.+ ....
T Consensus 86 n~~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~---------~~~I-y~~~~dGs~~~~lt~~~~~~ 151 (302)
T 3s25_A 86 DRNSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQT---------ATSL-YRIRIDGEEKKKIKNHYLFT 151 (302)
T ss_dssp CSEEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSS---------CEEE-EEEETTSCCCEEEESSCCCC
T ss_pred CCCeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCC---------CceE-EEEECCCCCeEEEeCCCceE
Confidence 2568999999999865554332 2389999999999861 110 1111 1111111 000 0124
Q ss_pred eecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCcee
Q psy1288 254 ITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHL 333 (1012)
Q Consensus 254 ~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~ 333 (1012)
++++|+.|||+.. ....|+++++++.. -+.|+ .... .. ..+++++.|++....++ .+|++.+++ |...
T Consensus 152 ~~~~g~~iy~t~~---g~~~Iy~~~l~g~~---~~~l~-~~~~--~~-~~~P~g~~iy~t~~~~~-~~I~~~~ld-G~~~ 219 (302)
T 3s25_A 152 CNTSDRYFYYNNP---KNGQLYRYDTASQS---EALFY-DCNC--YK-PVVLDDTNVYYMDVNRD-NAIVHVNIN-NPNP 219 (302)
T ss_dssp SEEETTEEEEECT---TTCCEEEEETTTTE---EEEEE-CSCE--EE-EEEEETTEEEEEEGGGT-TEEEEECSS-SCCC
T ss_pred eeEECCEEEEEeC---CCceEEEEECCCCC---EEEEe-CCCc--cc-eeeecCCEEEEEEcCCC-cEEEEEECC-CCCe
Confidence 7889999999865 34679999998765 23443 3221 11 22346688888765544 789999995 5444
Q ss_pred eeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 334 YTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 334 ~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
+.|+... + ..++|+++.|++...... ..|+.+++.
T Consensus 220 ~~Lt~~~--~--~~~~~~g~~Iy~~~~~~~--~~i~~~~~D 254 (302)
T 3s25_A 220 VVLTEAN--I--EHYNVYGSLIFYQRGGDN--PALCVVKND 254 (302)
T ss_dssp EECSCSC--E--EEEEEETTEEEEEECSSS--CEEEEEETT
T ss_pred EEEeCCC--c--ceEEECCCEEEEEECCCC--cEEEEEECC
Confidence 5565331 2 236788999988754432 689999993
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=118.79 Aligned_cols=113 Identities=18% Similarity=0.113 Sum_probs=79.4
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|..+.+... ++.|+||++||..+... .|.. ....|++ ||.|+.+|.||.|... .....
T Consensus 55 ~~~~~~~~~~~--------g~~p~vv~lhG~~~~~~--~~~~-~~~~L~~-~~~v~~~D~~G~G~S~--------~~~~~ 114 (314)
T 3kxp_A 55 IGRITLNVREK--------GSGPLMLFFHGITSNSA--VFEP-LMIRLSD-RFTTIAVDQRGHGLSD--------KPETG 114 (314)
T ss_dssp CSSCEEEEEEE--------CCSSEEEEECCTTCCGG--GGHH-HHHTTTT-TSEEEEECCTTSTTSC--------CCSSC
T ss_pred ECCEEEEEEec--------CCCCEEEEECCCCCCHH--HHHH-HHHHHHc-CCeEEEEeCCCcCCCC--------CCCCC
Confidence 36777766543 22579999999764432 3332 3455665 7999999999987543 11222
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..++++...+..+++.- ..+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 115 ~~~~~~~~dl~~~l~~l--~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 167 (314)
T 3kxp_A 115 YEANDYADDIAGLIRTL--ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDF 167 (314)
T ss_dssp CSHHHHHHHHHHHHHHH--TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCHHHHHHHHHHHHHHh--CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCC
Confidence 34556666555555542 336899999999999999999999999999998876
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-09 Score=121.45 Aligned_cols=285 Identities=13% Similarity=0.014 Sum_probs=149.2
Q ss_pred CCceEEEEEECC--CCce--EEEEEEEeCCCCCCCCCcEEEEEcCCCCCC--CCCC----------------cChh-HHH
Q psy1288 400 LFETKQVFYPSK--DGTK--IPMFILSRKGAQLDGNNPCILYGYGGFAVS--LQPG----------------FSVT-KIV 456 (1012)
Q Consensus 400 ~~~~~~v~~~s~--DG~~--i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~--~~~~----------------~~~~-~~~ 456 (1012)
.....+|.|.|. +|.. +.+.++.|.+. ..+.|+|.+.||..+.. ..|. +... ...
T Consensus 72 ~~~a~ri~Y~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~ 149 (462)
T 3guu_A 72 NAASFQLQYRTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIG 149 (462)
T ss_dssp TCEEEEEEEEEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHH
T ss_pred CceEEEEEEEEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHH
Confidence 345677777665 4655 55688889874 33589999999964322 1111 1111 234
Q ss_pred HHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC---
Q psy1288 457 FLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR--- 533 (1012)
Q Consensus 457 ~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--- 533 (1012)
++.++||+|+.+|++|.|.. +...... .....|.+.++..+. +.....+++++|+|+||..+++++...
T Consensus 150 ~~l~~G~~Vv~~Dy~G~G~~---y~~~~~~---~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~y 221 (462)
T 3guu_A 150 WALQQGYYVVSSDHEGFKAA---FIAGYEE---GMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAESY 221 (462)
T ss_dssp HHHHTTCEEEEECTTTTTTC---TTCHHHH---HHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEEecCCCCCCc---ccCCcch---hHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChhh
Confidence 41447999999999997742 2111000 011223333333332 222347999999999999998877643
Q ss_pred -CC-ceeEEEEccCCCccccCcceeeeecccccccCcc-ccc-----cc-CCCCccc--ccCCCCcchhhhhhhhhhhcc
Q psy1288 534 -PD-LFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMF-HFC-----DL-DTIPDRK--IEGKLPLTQVVHKVLDMLKFN 602 (1012)
Q Consensus 534 -p~-~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~-~~~-----dl-~~~~~~~--~~~~~plt~~~~~~~d~~~~~ 602 (1012)
|+ .+.++++..+ .+|+..... .+....+ .+. .+ ..-|+.. .+. -|+..-+.+++..+-.
T Consensus 222 apel~~~g~~~~~~---p~dl~~~~~-----~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~--~lt~~g~~~~~~~~~~ 291 (462)
T 3guu_A 222 APELNIVGASHGGT---PVSAKDTFT-----FLNGGPFAGFALAGVSGLSLAHPDMESFIEA--RLNAKGQRTLKQIRGR 291 (462)
T ss_dssp CTTSEEEEEEEESC---CCBHHHHHH-----HHTTSTTHHHHHHHHHHHHHHCHHHHHHHHT--TBCHHHHHHHHHHTST
T ss_pred cCccceEEEEEecC---CCCHHHHHH-----HhccchhHHHHHHHHHhHHhhCcchhHHHHH--HhCHHHHHHHHHHHhc
Confidence 44 3667777766 333221110 0000000 000 00 0000000 000 0111111111111100
Q ss_pred c-cc-------ccccccccc-C-CC-CChHHHHHHHcCCccc----CCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHH
Q psy1288 603 K-FT-------IGYFWESDY-G-SP-ANSSQFEYLLGYSPLH----NIQGPDELKGKQYPATLLMTADHDDRVSPVHSLK 667 (1012)
Q Consensus 603 ~-~~-------~g~~~~~~~-g-~p-~~~~~~~~~~~~sP~~----~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~ 667 (1012)
. +. .+......+ | ++ .++...+.+.....-. +-. ...+.| +|++||..|..|++.++.+
T Consensus 292 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~-----~~~~~P-vlI~hG~~D~vVP~~~s~~ 365 (462)
T 3guu_A 292 GFCLPQVVLTYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTV-----SVPKFP-RFIWHAIPDEIVPYQPAAT 365 (462)
T ss_dssp TCCHHHHHHHCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCC-----CCCCSE-EEEEEETTCSSSCHHHHHH
T ss_pred CcchHHHHHhhccCCHHHHcCCCccccCHHHHHHHHhhcccccccccCC-----CCCCCC-EEEEeCCCCCcCCHHHHHH
Confidence 0 00 000000000 1 11 1222333344332211 011 135667 9999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 668 FAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 668 ~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
++++++++ |.+++++.|++++|+... ...+.+.++||.+++..
T Consensus 366 l~~~l~~~-------G~~V~~~~y~~~~H~~~~-----~~~~~d~l~WL~~r~~G 408 (462)
T 3guu_A 366 YVKEQCAK-------GANINFSPYPIAEHLTAE-----IFGLVPSLWFIKQAFDG 408 (462)
T ss_dssp HHHHHHHT-------TCEEEEEEESSCCHHHHH-----HHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-------CCCeEEEEECcCCccCch-----hhhHHHHHHHHHHHhCC
Confidence 99999998 889999999999998642 23477889999988754
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.9e-09 Score=111.64 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=77.6
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+.+.||.+|.+... + ..|.||++||...... .|... ...|.++||.|+.+|.||.|.....
T Consensus 3 ~~~~~g~~l~y~~~---g-----~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~-------- 63 (274)
T 1a8q_A 3 CTTRDGVEIFYKDW---G-----QGRPVVFIHGWPLNGD--AWQDQ-LKAVVDAGYRGIAHDRRGHGHSTPV-------- 63 (274)
T ss_dssp EECTTSCEEEEEEE---C-----SSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEccCCCEEEEEec---C-----CCceEEEECCCcchHH--HHHHH-HHHHHhCCCeEEEEcCCCCCCCCCC--------
Confidence 45678888876543 1 2367999999754432 34443 3456667999999999998864221
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
.....++++...+..+++. .+.+++.++|||+||.+++.++.++ |++++++|...+
T Consensus 64 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~ 120 (274)
T 1a8q_A 64 WDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSA 120 (274)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred CCCCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecC
Confidence 1112344444444444443 2346799999999999998866655 899999888765
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-09 Score=117.42 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=78.9
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
+|.+|.+.... +.|.||++||..+... .|......++. +||.|+.+|.||.|..... ....
T Consensus 17 ~g~~l~~~~~g--------~~~~vv~~HG~~~~~~--~~~~~~~~l~~-~g~~v~~~d~~G~G~S~~~--------~~~~ 77 (309)
T 3u1t_A 17 EGATIAYVDEG--------SGQPVLFLHGNPTSSY--LWRNIIPYVVA-AGYRAVAPDLIGMGDSAKP--------DIEY 77 (309)
T ss_dssp TTEEEEEEEEE--------CSSEEEEECCTTCCGG--GGTTTHHHHHH-TTCEEEEECCTTSTTSCCC--------SSCC
T ss_pred CCeEEEEEEcC--------CCCEEEEECCCcchhh--hHHHHHHHHHh-CCCEEEEEccCCCCCCCCC--------Cccc
Confidence 78888765442 2578999999765433 34444333355 6999999999998754221 1123
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++++...+..+++.- ..+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 129 (309)
T 3u1t_A 78 RLQDHVAYMDGFIDAL--GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEA 129 (309)
T ss_dssp CHHHHHHHHHHHHHHH--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHc--CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEecc
Confidence 4555555555555442 346899999999999999999999999999888765
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.06 E-value=7e-09 Score=120.93 Aligned_cols=120 Identities=13% Similarity=0.011 Sum_probs=79.9
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
.+.+.+.||.+|.+... +..|.||++||..+... .|... ...|.++||.|+.+|+||.|.....
T Consensus 5 ~~~~~~~dG~~l~y~~~--------G~gp~VV~lHG~~~~~~--~~~~l-~~~La~~Gy~Vi~~D~rG~G~S~~~----- 68 (456)
T 3vdx_A 5 TVGQENSTSIDLYYEDH--------GTGVPVVLIHGFPLSGH--SWERQ-SAALLDAGYRVITYDRRGFGQSSQP----- 68 (456)
T ss_dssp EEEEETTEEEEEEEEEE--------SSSEEEEEECCTTCCGG--GGTTH-HHHHHHHTEEEEEECCTTSTTSCCC-----
T ss_pred eecccccCCeEEEEEEe--------CCCCEEEEECCCCCcHH--HHHHH-HHHHHHCCcEEEEECCCCCCCCCCC-----
Confidence 34456778888775432 24589999999865443 34443 4556557999999999998754321
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
.....++++...+..+++. .+.+++.++|+|+||.+++.++..+ |++++++|...+
T Consensus 69 ---~~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~ 125 (456)
T 3vdx_A 69 ---TTGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLAS 125 (456)
T ss_dssp ---SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESC
T ss_pred ---CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCC
Confidence 1122344444433333332 2446899999999998888777666 899999998877
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-09 Score=112.84 Aligned_cols=117 Identities=20% Similarity=0.185 Sum_probs=77.8
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+.+.||.+|.+... + ..|.||++||...... .|... ...|.++||.|+.+|.||.|.....
T Consensus 3 ~~~~~g~~l~y~~~---g-----~~~~vvllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~-------- 63 (273)
T 1a8s_A 3 FTTRDGTQIYYKDW---G-----SGQPIVFSHGWPLNAD--SWESQ-MIFLAAQGYRVIAHDRRGHGRSSQP-------- 63 (273)
T ss_dssp EECTTSCEEEEEEE---S-----CSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EecCCCcEEEEEEc---C-----CCCEEEEECCCCCcHH--HHhhH-HhhHhhCCcEEEEECCCCCCCCCCC--------
Confidence 45678888865443 1 2367999999754432 34443 3456667999999999998754221
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
....+++++...+..+++. .+.+++.++|+|+||.+++.++.++ |++++++|...+
T Consensus 64 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~ 120 (273)
T 1a8s_A 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISA 120 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcc
Confidence 1122344444444444443 2346899999999999998866554 899998888765
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-09 Score=129.38 Aligned_cols=124 Identities=14% Similarity=0.066 Sum_probs=84.5
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
.+..++...||.+|.+... ++.|.||++||+.+... .|... ...|.++||.|+.+|.||.|.....-
T Consensus 237 ~~~~~~~~~dg~~l~~~~~--------g~~p~vv~~HG~~~~~~--~~~~~-~~~l~~~G~~v~~~D~~G~G~S~~~~-- 303 (555)
T 3i28_A 237 MSHGYVTVKPRVRLHFVEL--------GSGPAVCLCHGFPESWY--SWRYQ-IPALAQAGYRVLAMDMKGYGESSAPP-- 303 (555)
T ss_dssp SEEEEEEEETTEEEEEEEE--------CSSSEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTSCCCS--
T ss_pred cceeEEEeCCCcEEEEEEc--------CCCCEEEEEeCCCCchh--HHHHH-HHHHHhCCCEEEEecCCCCCCCCCCC--
Confidence 4555667779998876554 24589999999865443 34443 45566679999999999987542210
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
......++++...+..+++. ...+++.++|||+||.+++.++.++|++++++|...+
T Consensus 304 ----~~~~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 360 (555)
T 3i28_A 304 ----EIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 360 (555)
T ss_dssp ----CGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ----CcccccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEcc
Confidence 00112234443333333332 1446899999999999999999999999999988766
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.8e-09 Score=111.28 Aligned_cols=118 Identities=18% Similarity=0.160 Sum_probs=83.9
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.||.+|.+..+.+ ++.|.||++||..+... .|.. ....|.++||.|+.+|.||.|...... ....
T Consensus 11 ~~g~~l~~~~~g~------~~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~G~G~s~~~~------~~~~ 75 (286)
T 3qit_A 11 FGGNQICLCSWGS------PEHPVVLCIHGILEQGL--AWQE-VALPLAAQGYRVVAPDLFGHGRSSHLE------MVTS 75 (286)
T ss_dssp ETTEEEEEEEESC------TTSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCCS------SGGG
T ss_pred cCCceEEEeecCC------CCCCEEEEECCCCcccc--hHHH-HHHHhhhcCeEEEEECCCCCCCCCCCC------CCCC
Confidence 4788888877643 34579999999865443 3443 345666679999999999987542211 0112
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+.++...+..+++.- +.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 76 ~~~~~~~~~~~~~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 128 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQEL--PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVEL 128 (286)
T ss_dssp CSHHHHHHHHHHHHHHS--CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHhc--CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecC
Confidence 23455555555555542 346899999999999999999999999999998877
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=122.91 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=80.9
Q ss_pred EECCCCceEEEEEEEeC-CCCCCCCCcEEEEEcCCCCCCCC----------CC-cChhH--HHHHHhCCeEEEEEcCCCC
Q psy1288 408 YPSKDGTKIPMFILSRK-GAQLDGNNPCILYGYGGFAVSLQ----------PG-FSVTK--IVFLRDFNGIYAIPNIRGG 473 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~-~~~~~~~~P~vv~~hGg~~~~~~----------~~-~~~~~--~~~l~~~G~~v~~~d~RG~ 473 (1012)
+...||..|...+.+.. +.....+.|+||++||..+.... .. |.... ...+..+||.|+++|.||.
T Consensus 17 ~~~~~g~~l~~~i~y~~~g~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~ 96 (377)
T 3i1i_A 17 YTFENGRTIPVQMGYETYGTLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCN 96 (377)
T ss_dssp EECTTSCEEEEEEEEEEESCCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTC
T ss_pred eeecCCCEeeeeEEEEeecccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEeccccc
Confidence 55567766622222211 11112346899999997665433 11 22211 0223346999999999977
Q ss_pred CC--------CchhHHhh--hh---cCCCcchHhHHHHHHHHHHHcCCCCCCcEE-EEecChHHHHHHHHHhhCCCceeE
Q psy1288 474 GE--------YGERWHDG--GR---LLNKQNVFDDFQCAAEYLIASGYTQSSRLA-IQGGSNGGLLTAACINQRPDLFGA 539 (1012)
Q Consensus 474 g~--------~g~~~~~~--~~---~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a 539 (1012)
|. .|..-... +. ......+++|+.+.+..+++. ...+++. ++|||+||.+++.++.++|+++++
T Consensus 97 G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~ 174 (377)
T 3i1i_A 97 VQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHMVER 174 (377)
T ss_dssp SCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTTBSE
T ss_pred ccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHHHHH
Confidence 43 11110000 00 001123567777777777655 2345775 999999999999999999999999
Q ss_pred EEE-ccC
Q psy1288 540 AIV-QVG 545 (1012)
Q Consensus 540 ~v~-~~~ 545 (1012)
+|. ..+
T Consensus 175 lvl~~~~ 181 (377)
T 3i1i_A 175 MIGVITN 181 (377)
T ss_dssp EEEESCC
T ss_pred hcccCcC
Confidence 988 544
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-08 Score=109.96 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=82.0
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.||.+|.+...-+ ...|.||++||...... .|.......|.++||.|+.+|.||.|..... . . ....
T Consensus 8 ~~g~~l~y~~~G~------~~~~~vvllHG~~~~~~--~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~--~--~-~~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGD------PADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTR--D--F-AAHP 74 (298)
T ss_dssp ETTEEEEEEEESC------TTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCC--C--T-TTSC
T ss_pred cCCeEEEEEeccC------CCCCeEEEEcCCCCCcc--chHHHHHHHHHhCCCEEEeeCCCCCCCCCCC--C--C-CcCC
Confidence 4788887665432 12468999999765432 4555444667777999999999998864320 0 0 0112
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++++...+..+++. ...+++.++|||+||.+++.++.++|++++++|...+
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 127 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLG 127 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecc
Confidence 3345555544444443 2346899999999999999999999999999988766
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-08 Score=108.31 Aligned_cols=222 Identities=8% Similarity=0.050 Sum_probs=140.8
Q ss_pred CCCeeeCCEEEEEEEcCCC---------CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEE-eCC
Q psy1288 109 SSPQRQGDHYFFFHNTGLQ---------NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCL-SSS 178 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~---------~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~-~~~ 178 (1012)
+...++|+++||.....+. +...||+++..+++.++|.+ +. ...|||+|++|+|+. +..
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-------~~----~~~~s~~g~~Iy~~~~~~~ 126 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-------DP----CIYASLIGNYIYYLHYDTQ 126 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-------SC----EEEEEEETTEEEEEEESSS
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-------CC----ccEEEEeCCEEEEEeecCC
Confidence 4456899999999875421 24689999999888888876 21 237899999999987 333
Q ss_pred CCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc--cCCCCCceEEEEeeccccceeeeeeec
Q psy1288 179 GSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK--KHSKKNRSSAYHLTVNVAPITSQYITN 256 (1012)
Q Consensus 179 G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~--~~~~~~~~l~~~~~~~~~~i~~~~~s~ 256 (1012)
+ ...||.+++++.+..+++.... ..|+|||+.|+|+.......-. .++. ..+.++ .+..+..+.|
T Consensus 127 ~--~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~-~~~~l~------~~~~~~~~~P 193 (302)
T 3s25_A 127 T--ATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ-SEALFY------DCNCYKPVVL 193 (302)
T ss_dssp S--CEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT-EEEEEE------CSCEEEEEEE
T ss_pred C--CceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC-CEEEEe------CCCccceeee
Confidence 4 3589999999877665554433 3567899999999752110000 1111 112221 1111223569
Q ss_pred CCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeee
Q psy1288 257 EGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTF 336 (1012)
Q Consensus 257 dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l 336 (1012)
+|+.||+....+ .++|+++++++.. .+.|+ .. .+.++.. .++.|++..... ..+|+.+++ +|..+++|
T Consensus 194 ~g~~iy~t~~~~--~~~I~~~~ldG~~---~~~Lt-~~---~~~~~~~-~g~~Iy~~~~~~-~~~i~~~~~-DG~~r~~l 261 (302)
T 3s25_A 194 DDTNVYYMDVNR--DNAIVHVNINNPN---PVVLT-EA---NIEHYNV-YGSLIFYQRGGD-NPALCVVKN-DGTGFKEL 261 (302)
T ss_dssp ETTEEEEEEGGG--TTEEEEECSSSCC---CEECS-CS---CEEEEEE-ETTEEEEEECSS-SCEEEEEET-TSCCCEEE
T ss_pred cCCEEEEEEcCC--CcEEEEEECCCCC---eEEEe-CC---CcceEEE-CCCEEEEEECCC-CcEEEEEEC-CCCccEEe
Confidence 999999986543 3799999998765 23443 22 2344444 448887765443 378999999 56555555
Q ss_pred cCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 337 PLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 337 ~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.... + ...++.++.|+|+-.... .|+++++
T Consensus 262 ~~~~--~--~~i~i~~d~Iy~td~~~~---~i~~~~~ 291 (302)
T 3s25_A 262 AKGE--F--CNINVTSQYVYFTDFVSN---KEYCTST 291 (302)
T ss_dssp EESC--E--EEEEECSSEEEEEETTTC---CEEEEES
T ss_pred eCCc--c--ceEEEeCCEEEEEECCCC---eEEEEEC
Confidence 4332 2 234567889998754322 3888887
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-09 Score=110.80 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHH----Hc
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLI----AS 506 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~----~~ 506 (1012)
+.|.||++||..+... .|. . ...+. +||.|+.+|+||.|... ......++++...+..++ ..
T Consensus 15 ~~~~vv~~hG~~~~~~--~~~-~-~~~l~-~g~~v~~~d~~g~g~s~---------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3e0x_A 15 SPNTLLFVHGSGCNLK--IFG-E-LEKYL-EDYNCILLDLKGHGESK---------GQCPSTVYGYIDNVANFITNSEVT 80 (245)
T ss_dssp CSCEEEEECCTTCCGG--GGT-T-GGGGC-TTSEEEEECCTTSTTCC---------SCCCSSHHHHHHHHHHHHHHCTTT
T ss_pred CCCEEEEEeCCcccHH--HHH-H-HHHHH-hCCEEEEecCCCCCCCC---------CCCCcCHHHHHHHHHHHHHhhhhH
Confidence 4689999999765443 233 2 23344 69999999999987542 111223455555555555 11
Q ss_pred CCCCCCcEEEEecChHHHHHHHHHhh-CCCceeEEEEccC
Q psy1288 507 GYTQSSRLAIQGGSNGGLLTAACINQ-RPDLFGAAIVQVG 545 (1012)
Q Consensus 507 ~~~d~~~i~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~ 545 (1012)
.... ++.++|+|+||.+++.++.+ +|+ +++++...+
T Consensus 81 ~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~ 117 (245)
T 3e0x_A 81 KHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSG 117 (245)
T ss_dssp TTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESC
T ss_pred hhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecC
Confidence 2223 89999999999999999999 999 999998877
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-09 Score=112.72 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=77.7
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
+|.++.+... ++.|.||++||....... |... ...|.+ ||.|+.+|.||.|.....- .....
T Consensus 11 ~~~~~~y~~~--------g~~~~vv~~HG~~~~~~~--~~~~-~~~L~~-~~~vi~~d~~G~G~s~~~~------~~~~~ 72 (278)
T 3oos_A 11 PRGKFEYFLK--------GEGPPLCVTHLYSEYNDN--GNTF-ANPFTD-HYSVYLVNLKGCGNSDSAK------NDSEY 72 (278)
T ss_dssp TTEEEEEEEE--------CSSSEEEECCSSEECCTT--CCTT-TGGGGG-TSEEEEECCTTSTTSCCCS------SGGGG
T ss_pred CCceEEEEec--------CCCCeEEEEcCCCcchHH--HHHH-HHHhhc-CceEEEEcCCCCCCCCCCC------CcccC
Confidence 5666665432 235789999997644432 3322 345665 9999999999987542210 01122
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++++...+..+++. .+.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 73 ~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~ 124 (278)
T 3oos_A 73 SMTETIKDLEAIREA--LYINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGA 124 (278)
T ss_dssp SHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESC
T ss_pred cHHHHHHHHHHHHHH--hCCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecC
Confidence 355665555555554 2446899999999999999999999999999998877
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.2e-09 Score=110.43 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
|.||++||..+... .|... ...|.++||.|+.+|.||.|...... ....++++....+..+++.-. ..+
T Consensus 5 ~~vv~lHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~l~-~~~ 73 (258)
T 3dqz_A 5 HHFVLVHNAYHGAW--IWYKL-KPLLESAGHRVTAVELAASGIDPRPI-------QAVETVDEYSKPLIETLKSLP-ENE 73 (258)
T ss_dssp CEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTCSSCG-------GGCCSHHHHHHHHHHHHHTSC-TTC
T ss_pred CcEEEECCCCCccc--cHHHH-HHHHHhCCCEEEEecCCCCcCCCCCC-------CccccHHHhHHHHHHHHHHhc-ccC
Confidence 78999999865443 35443 45566679999999999987543211 011334555555544554421 137
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.++|+|+||.+++.++.++|++++++|...+
T Consensus 74 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 106 (258)
T 3dqz_A 74 EVILVGFSFGGINIALAADIFPAKIKVLVFLNA 106 (258)
T ss_dssp CEEEEEETTHHHHHHHHHTTCGGGEEEEEEESC
T ss_pred ceEEEEeChhHHHHHHHHHhChHhhcEEEEecC
Confidence 899999999999999999999999999998766
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=117.77 Aligned_cols=186 Identities=13% Similarity=0.047 Sum_probs=112.4
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC-CccccchhhhhHHHHHHHHhCCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG-KPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~-~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.+.|.|+++||+.-..........+...|... |..++..-+++.|.+.+ ........+....++|+......
T Consensus 41 ~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~-------G~~v~~~d~~g~g~s~~~~~~~~~~~d~~~~~~~l~~~~~~ 113 (276)
T 3hxk_A 41 YTFPAIIICPGGGYQHISQRESDPLALAFLAQ-------GYQVLLLNYTVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKE 113 (276)
T ss_dssp CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHT-------TCEEEEEECCCTTSCCCSCTHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEEEcCCccccCCchhhHHHHHHHHHC-------CCEEEEecCccCCCcCCCCcCchHHHHHHHHHHHHHHhHHH
Confidence 46788999999531111222223344455544 44444444443333211 12223456777788888887654
Q ss_pred CCCCCCCCCCc--cCCccccccCccceeeeccccc-cccchhh-----hcccccCCCCCCCCCCCcccCCCCCChhhhhH
Q psy1288 723 LQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQ-KDDILIA-----EVLDMLKFNKFTIGYFWESDYGSPANSSQFEY 794 (1012)
Q Consensus 723 ~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 794 (1012)
.. .+..++. |.|.| ++.++..... .+..+.+ ++.++...+. ....+...+ ++ +.
T Consensus 114 ~~--~~~~~i~l~G~S~G-------g~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~--~~~~~~~~~--~~---~~-- 175 (276)
T 3hxk_A 114 WQ--INPEQVFLLGCSAG-------GHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWP--SDLSHFNFE--IE---NI-- 175 (276)
T ss_dssp TT--BCTTCCEEEEEHHH-------HHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCS--SSSSSSCCC--CS---CC--
T ss_pred cC--CCcceEEEEEeCHH-------HHHHHHHHhhccCCCccEEEEecCcccHHhhCC--cchhhhhcC--ch---hh--
Confidence 32 2333444 88888 4444333222 2333322 5555433321 111111112 11 11
Q ss_pred hHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 795 LLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
..++|+.++. ++.+|+||+||++|..||+.++.+++++|+..|+ +++++++++.||++..
T Consensus 176 -~~~~~~~~~~-------~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~-------~~~~~~~~~~~H~~~~ 235 (276)
T 3hxk_A 176 -SEYNISEKVT-------SSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQV-------PFEAHFFESGPHGVSL 235 (276)
T ss_dssp -GGGBTTTTCC-------TTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTC-------CEEEEEESCCCTTCTT
T ss_pred -hhCChhhccc-------cCCCCEEEEecCCCceeChHHHHHHHHHHHHcCC-------CeEEEEECCCCCCccc
Confidence 5668888888 8889999999999999999999999999999988 9999999999999874
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-09 Score=114.25 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=70.4
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
+.|.||++||..+... .|.......+.++||.|+.+|.||.|.... .....++++...+..+++.- +
T Consensus 42 ~~~~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~s~~---------~~~~~~~~~~~~~~~~l~~l--~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGAGR--TWHPHQVPAFLAAGYRCITFDNRGIGATEN---------AEGFTTQTMVADTAALIETL--D 108 (293)
T ss_dssp SSEEEEEECCTTCCGG--GGTTTTHHHHHHTTEEEEEECCTTSGGGTT---------CCSCCHHHHHHHHHHHHHHH--T
T ss_pred CCCEEEEECCCCCchh--hcchhhhhhHhhcCCeEEEEccCCCCCCCC---------cccCCHHHHHHHHHHHHHhc--C
Confidence 4578999999765443 344222344545799999999999753211 11123444444444444331 3
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.+++.++.++|+++++++...+
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 143 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMAT 143 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecc
Confidence 46899999999999999999999999999998877
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-09 Score=111.81 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=78.2
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+.+.||.+|.+....+. ..|.||++||...... .|... ...|.++||.|+.+|.||.|.....
T Consensus 3 ~~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~-------- 65 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPR------DGLPVVFHHGWPLSAD--DWDNQ-MLFFLSHGYRVIAHDRRGHGRSDQP-------- 65 (275)
T ss_dssp EECTTSCEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EEccCCCEEEEEEcCCC------CCceEEEECCCCCchh--hHHHH-HHHHHHCCceEEEEcCCcCCCCCCC--------
Confidence 45678988876655321 2367999999754332 35443 4456667999999999998754321
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
.....++++...+..+++. ...+++.++|||+||.+++..+.++ |++++++|...+
T Consensus 66 ~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~ 122 (275)
T 1a88_A 66 STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSA 122 (275)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESC
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecC
Confidence 1112344444333333333 1345799999999999998866665 999999888765
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=117.82 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
|+||++||..+... .|.. ....|.+ ||.|+.+|+||.|........ ......++++...+..+++.- ..+
T Consensus 29 ~~vv~lHG~~~~~~--~~~~-~~~~l~~-g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (282)
T 3qvm_A 29 KTVLLAHGFGCDQN--MWRF-MLPELEK-QFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVAL--DLV 98 (282)
T ss_dssp CEEEEECCTTCCGG--GGTT-THHHHHT-TSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHHT--TCC
T ss_pred CeEEEECCCCCCcc--hHHH-HHHHHhc-CceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHHc--CCC
Confidence 89999999765432 3443 3466775 999999999998865332110 001123455555555555442 347
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.++|+|+||.+++.++.++|+++++++...+
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 131 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICP 131 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESC
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecC
Confidence 899999999999999999988999999998877
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=115.08 Aligned_cols=105 Identities=13% Similarity=0.166 Sum_probs=74.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
...|.||++||..+... .|.. ....|.++||.|+.+|.||.|...... .....+++....+..+++.- .
T Consensus 10 ~~~~~vvllHG~~~~~~--~~~~-~~~~l~~~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGAW--CWYK-IVALMRSSGHNVTALDLGASGINPKQA-------LQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp CCCCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCeEEEECCCCCCcc--hHHH-HHHHHHhcCCeEEEeccccCCCCCCcC-------CccCCHHHHHHHHHHHHHhc-C
Confidence 45689999999865432 3443 345666679999999999987543221 01133455555555555442 1
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 114 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSG 114 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecC
Confidence 467899999999999999999999999999998766
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-09 Score=114.42 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..|+||++||...... .|... ...|.+ ||.|+.+|.||.|........ ......++++...+..+++. .+
T Consensus 19 ~~p~vv~~HG~~~~~~--~~~~~-~~~l~~-g~~v~~~D~~G~G~S~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~ 88 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQS--AWNRI-LPFFLR-DYRVVLYDLVCAGSVNPDFFD----FRRYTTLDPYVDDLLHILDA--LG 88 (269)
T ss_dssp CSSEEEEECCTTCCGG--GGTTT-GGGGTT-TCEEEEECCTTSTTSCGGGCC----TTTCSSSHHHHHHHHHHHHH--TT
T ss_pred CCCEEEEEeCCCCcHH--HHHHH-HHHHhC-CcEEEEEcCCCCCCCCCCCCC----ccccCcHHHHHHHHHHHHHh--cC
Confidence 4589999999765432 33332 345665 999999999998765321110 11122345555555555544 24
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.+++.++.++|+++++++...+
T Consensus 89 ~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~ 123 (269)
T 4dnp_A 89 IDCCAYVGHSVSAMIGILASIRRPELFSKLILIGA 123 (269)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred CCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCC
Confidence 46899999999999999999999999999998877
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.7e-09 Score=112.65 Aligned_cols=122 Identities=14% Similarity=0.060 Sum_probs=81.0
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
+...+.. +|.++.+....+ ...|.||++||+.+... .|... ...|++ ||.|+.+|+||.++....
T Consensus 46 ~~~~v~~-~~~~~~~~~~g~------~~~~~vv~lHG~~~~~~--~~~~~-~~~L~~-g~~vi~~D~~G~gG~s~~---- 110 (306)
T 2r11_A 46 KSFYIST-RFGQTHVIASGP------EDAPPLVLLHGALFSST--MWYPN-IADWSS-KYRTYAVDIIGDKNKSIP---- 110 (306)
T ss_dssp EEEEECC-TTEEEEEEEESC------TTSCEEEEECCTTTCGG--GGTTT-HHHHHH-HSEEEEECCTTSSSSCEE----
T ss_pred ceEEEec-CCceEEEEeeCC------CCCCeEEEECCCCCCHH--HHHHH-HHHHhc-CCEEEEecCCCCCCCCCC----
Confidence 3444444 444665554321 23578999999875443 34433 345665 999999999998332111
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
......++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 111 ---~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 167 (306)
T 2r11_A 111 ---ENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSP 167 (306)
T ss_dssp ---CSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ---CCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcC
Confidence 11123445555555555544 2347899999999999999999999999999999877
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=8.6e-09 Score=111.57 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=74.3
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
.+.||.+|.+... + ..|.||++||..+... .|... ...|.++||.|+.+|.||.|..... .
T Consensus 12 ~~~~g~~l~y~~~---G-----~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~--------~ 72 (281)
T 3fob_A 12 ENQAPIEIYYEDH---G-----TGKPVVLIHGWPLSGR--SWEYQ-VPALVEAGYRVITYDRRGFGKSSQP--------W 72 (281)
T ss_dssp ETTEEEEEEEEEE---S-----SSEEEEEECCTTCCGG--GGTTT-HHHHHHTTEEEEEECCTTSTTSCCC--------S
T ss_pred CCCCceEEEEEEC---C-----CCCeEEEECCCCCcHH--HHHHH-HHHHHhCCCEEEEeCCCCCCCCCCC--------c
Confidence 3456766665432 2 2356888999865443 34444 3445557999999999998854321 1
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh-hCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN-QRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~ 545 (1012)
...+++++...+..+++. ...+++.++|+|+||.+++..+. ..|++++.++...+
T Consensus 73 ~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~ 128 (281)
T 3fob_A 73 EGYEYDTFTSDLHQLLEQ--LELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGA 128 (281)
T ss_dssp SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred cccCHHHHHHHHHHHHHH--cCCCcEEEEEECccHHHHHHHHHHccccceeEEEEecC
Confidence 123345555545555544 23468999999999987766544 45899988887765
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=108.92 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=75.7
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.+|.+.... ...|.||++||..+.. ...|.. ....|.++||.|+++|.||.|..... ......
T Consensus 9 ~~g~~l~~~~~g-------~~~~~vvllHG~~~~~-~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~~~ 74 (254)
T 2ocg_A 9 VNGVQLHYQQTG-------EGDHAVLLLPGMLGSG-ETDFGP-QLKNLNKKLFTVVAWDPRGYGHSRPP-----DRDFPA 74 (254)
T ss_dssp ETTEEEEEEEEE-------CCSEEEEEECCTTCCH-HHHCHH-HHHHSCTTTEEEEEECCTTSTTCCSS-----CCCCCT
T ss_pred ECCEEEEEEEec-------CCCCeEEEECCCCCCC-ccchHH-HHHHHhhCCCeEEEECCCCCCCCCCC-----CCCCCh
Confidence 377777665432 1235789999965431 112433 34556666899999999998754221 001111
Q ss_pred chH-hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVF-DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~-~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+ ++..+.++++... ..+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 75 ~~~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 127 (254)
T 2ocg_A 75 DFFERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGA 127 (254)
T ss_dssp THHHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEecc
Confidence 112 2333444444443 346899999999999999999999999999988766
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-08 Score=108.30 Aligned_cols=118 Identities=12% Similarity=0.065 Sum_probs=82.0
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+.+.||.+|.+...-+ +..|.||++||...... .|... ...|++ +|.|+.+|.||.|.....
T Consensus 9 ~~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~~~--~w~~~-~~~L~~-~~~vi~~D~rG~G~S~~~-------- 70 (266)
T 3om8_A 9 LATSDGASLAYRLDGA------AEKPLLALSNSIGTTLH--MWDAQ-LPALTR-HFRVLRYDARGHGASSVP-------- 70 (266)
T ss_dssp EECTTSCEEEEEEESC------TTSCEEEEECCTTCCGG--GGGGG-HHHHHT-TCEEEEECCTTSTTSCCC--------
T ss_pred EeccCCcEEEEEecCC------CCCCEEEEeCCCccCHH--HHHHH-HHHhhc-CcEEEEEcCCCCCCCCCC--------
Confidence 4567999998766532 23578999999654332 45544 455664 899999999998854321
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+++++...+..+++.- ..+++.++|+|+||.+++.++.++|+++++.|...+
T Consensus 71 ~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~ 126 (266)
T 3om8_A 71 PGPYTLARLGEDVLELLDAL--EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANT 126 (266)
T ss_dssp CSCCCHHHHHHHHHHHHHHT--TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCCCCHHHHHHHHHHHHHHh--CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecC
Confidence 11223445544444444432 345789999999999999999999999999888765
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-10 Score=135.52 Aligned_cols=220 Identities=18% Similarity=0.110 Sum_probs=130.5
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC---CCcChhHHHHHHhCCeEEEEEcCCCC-CCCchhHHhhhh
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ---PGFSVTKIVFLRDFNGIYAIPNIRGG-GEYGERWHDGGR 485 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~d~RG~-g~~g~~~~~~~~ 485 (1012)
+.|+ |...++.|... .++.|+||++|||...... ..+.. ..+..+.|++|+.+|+|.+ .+++..-.. ..
T Consensus 79 ~edc--L~l~v~~P~~~--~~~~PviV~iHGGg~~~g~~~~~~~~~--~~la~~g~~vvv~~nYRlg~~Gf~~~~~~-~~ 151 (489)
T 1qe3_A 79 SEDC--LYVNVFAPDTP--SQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGPFGFLHLSSF-DE 151 (489)
T ss_dssp CSCC--CEEEEEEECSS--CCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHHHHSCCCTTT-CT
T ss_pred CCCC--CEEEEEeCCCC--CCCCCEEEEECCCccccCCCCCcccCH--HHHHhcCCEEEEecCccCcccccCccccc-cc
Confidence 3444 44556778652 3458999999998633221 22232 2334433599999999942 223211000 00
Q ss_pred cCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccCCCccccCcceeeeec
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVGNPEISDCGRWLIVHT 560 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~~~i~d~~~~~~~~~ 560 (1012)
...+...+.|+.++++|+.++. .+|+++|+|+|+|+||.+++.++... +.+|+++|+.+| +.++..
T Consensus 152 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg---~~~~~~------ 222 (489)
T 1qe3_A 152 AYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESG---ASRTMT------ 222 (489)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESC---CCCCBC------
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCC---CCCCCC------
Confidence 1223345789999999998863 35999999999999999988877653 578999999988 211100
Q ss_pred ccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCC---------ChHHHHHHHcCCc
Q psy1288 561 MKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPA---------NSSQFEYLLGYSP 631 (1012)
Q Consensus 561 ~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~---------~~~~~~~~~~~sP 631 (1012)
. .. ..+.. .. +....|.+. ..+ +.+...++
T Consensus 223 ----------~-----------------~~----~~~~~--~~------~~~~~g~~~~~~~~Lr~~~~~--~l~~~~~~ 261 (489)
T 1qe3_A 223 ----------K-----------------EQ----AASTA--AA------FLQVLGINESQLDRLHTVAAE--DLLKAADQ 261 (489)
T ss_dssp ----------H-----------------HH----HHHHH--HH------HHHHHTCCTTCGGGGGTSCHH--HHHHHHHH
T ss_pred ----------H-----------------HH----HHHHH--HH------HHHHcCCCHHHHHHHHcCCHH--HHHHHHHH
Confidence 0 00 00000 00 000111110 111 11111122
Q ss_pred ccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 632 LHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 632 ~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
+.... ....| .+++|+..|..+.+.++.++.++++.. ++++.+-.++++||++..
T Consensus 262 ~~~~~------~~~~~-~~~~~p~~D~~~~~~~~~~~~~~~~~~-------~vp~~~g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 262 LRIAE------KENIF-QLFFQPALDPKTLPEEPEKSIAEGAAS-------GIPLLIGTTRDEGYLFFT 316 (489)
T ss_dssp HHTST------TCCTT-SCSSCCBCBTTTBCSCHHHHHHTTTTT-------TCCEEEEEETTGGGGTCC
T ss_pred hhhcc------ccccC-CccceEeECCeecCcCHHHHHhcCCCC-------CCCEEEeeecchhHhhcc
Confidence 21111 12223 677899999999999998888777666 899999999999999865
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-08 Score=110.82 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=75.9
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
+.||.+|.+... + ..+.||++||...... .|... ...|.++||.|+.+|.||.|..... ..
T Consensus 9 ~~~g~~l~y~~~---g-----~g~pvvllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~--------~~ 69 (277)
T 1brt_A 9 NSTSIDLYYEDH---G-----TGQPVVLIHGFPLSGH--SWERQ-SAALLDAGYRVITYDRRGFGQSSQP--------TT 69 (277)
T ss_dssp TTEEEEEEEEEE---C-----SSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC--------SS
T ss_pred cCCCcEEEEEEc---C-----CCCeEEEECCCCCcHH--HHHHH-HHHHhhCCCEEEEeCCCCCCCCCCC--------CC
Confidence 456777765433 2 1234888999765432 34443 4556667999999999998754321 01
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC-ceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD-LFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~ 545 (1012)
..+++++...+..+++. ...+++.++|+|+||.+++.++.++|+ +++++|...+
T Consensus 70 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~ 124 (277)
T 1brt_A 70 GYDYDTFAADLNTVLET--LDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLAS 124 (277)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred CccHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecC
Confidence 12344444444344433 134689999999999999999999998 9999888765
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.6e-09 Score=111.56 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=78.7
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
+.+.||.+|.+....++ ..|.||++||...... .|... ...|.++||.|+.+|.||.|.....
T Consensus 4 ~~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~vi~~D~~G~G~S~~~-------- 66 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPR------DAPVIHFHHGWPLSAD--DWDAQ-LLFFLAHGYRVVAHDRRGHGRSSQV-------- 66 (276)
T ss_dssp EECTTSCEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC--------
T ss_pred EECCCCcEEEEEecCCC------CCCeEEEECCCCcchh--HHHHH-HHHHHhCCCEEEEecCCCCCCCCCC--------
Confidence 45678988876655321 2367999999754432 35443 4556667999999999998865321
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
....+++++...+..+++. .+.+++.++|||+||.+++.++.++ |++++++|...+
T Consensus 67 ~~~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~ 123 (276)
T 1zoi_A 67 WDGHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAA 123 (276)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESC
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecC
Confidence 1112344444333333332 1345799999999999998877666 899998888765
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=98.99 E-value=7e-09 Score=111.60 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..|.||++||..+... .|... ...|. .+|.|+.+|.||.|..... .....+++++.+.+..+++.- .
T Consensus 14 ~~~~vvllHG~~~~~~--~w~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l--~ 80 (268)
T 3v48_A 14 DAPVVVLISGLGGSGS--YWLPQ-LAVLE-QEYQVVCYDQRGTGNNPDT-------LAEDYSIAQMAAELHQALVAA--G 80 (268)
T ss_dssp TCCEEEEECCTTCCGG--GGHHH-HHHHH-TTSEEEECCCTTBTTBCCC-------CCTTCCHHHHHHHHHHHHHHT--T
T ss_pred CCCEEEEeCCCCccHH--HHHHH-HHHHh-hcCeEEEECCCCCCCCCCC-------ccccCCHHHHHHHHHHHHHHc--C
Confidence 4588999999755432 45443 45566 4899999999998753211 111234566666666565542 3
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.+++.++.++|+++.+.|...+
T Consensus 81 ~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~ 115 (268)
T 3v48_A 81 IEHYAVVGHALGALVGMQLALDYPASVTVLISVNG 115 (268)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred CCCeEEEEecHHHHHHHHHHHhChhhceEEEEecc
Confidence 46799999999999999999999999999888766
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=131.08 Aligned_cols=230 Identities=12% Similarity=0.065 Sum_probs=141.5
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
...+++++|..... +...||..+..++..++++... .+..+.|||||++|||.. . ..||++|++
T Consensus 210 ~~s~d~l~~~~~~d--g~~~l~~~~~~g~~~~~l~~~~--------~~~~~~~SpDG~~la~~~--~----~~i~~~d~~ 273 (1045)
T 1k32_A 210 VIVGHRIYFITDID--GFGQIYSTDLDGKDLRKHTSFT--------DYYPRHLNTDGRRILFSK--G----GSIYIFNPD 273 (1045)
T ss_dssp EEETTEEEEEECTT--SSCEEEEEETTSCSCEECCCCC--------SSCEEEEEESSSCEEEEE--T----TEEEEECTT
T ss_pred EEeCCEEEEEEecc--CceEEEEEeCCCCcceEecCCC--------CcceeeEcCCCCEEEEEe--C----CEEEEecCC
Confidence 33466888887543 4578999988777777776522 134569999999999984 2 279999996
Q ss_pred CCceeceeec-----------ceeeeeeEEe-eCCCeEEEEecCCCCCcccCCCCCceEEEEeecccc-ceeeeeeecCC
Q psy1288 192 TGKEYPEVLH-----------RLKFVSIAWT-HDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVA-PITSQYITNEG 258 (1012)
Q Consensus 192 tg~~~~~t~~-----------~~~~~~~~WS-pDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~-~i~~~~~s~dg 258 (1012)
+++...+... ......++|| |||+.|+|.....-. ..+..... .. ....... .+....|+ ||
T Consensus 274 ~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~--~~~~~~~~-~~-~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 274 TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAF--IQDVSGTY-VL-KVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEE--EECTTSSB-EE-ECSCCSCEEEEEECSS-SE
T ss_pred ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEE--EEcCCCCc-eE-EccCCCcceEEeeeEc-CC
Confidence 6554422211 0124679999 999999998722000 00000000 00 0000001 23345689 99
Q ss_pred CEEEEEECCCCCCceEE-EEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeec
Q psy1288 259 PQFVFKTNKDAPNYRLI-TIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFP 337 (1012)
Q Consensus 259 ~~l~~~tn~~~~~~~L~-~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~ 337 (1012)
+.|++.++ ...|+ .+++.+++ .+.+. .....+.......+++.|++.... ..|+++++.+|+....+.
T Consensus 349 ~~l~~~s~----~~~l~~~~d~~~~~---~~~l~-~~~~~~~~~~~SpDG~~la~~~~~---~~v~~~d~~tg~~~~~~~ 417 (1045)
T 1k32_A 349 VAFIHGTR----EGDFLGIYDYRTGK---AEKFE-ENLGNVFAMGVDRNGKFAVVANDR---FEIMTVDLETGKPTVIER 417 (1045)
T ss_dssp EEEEEEET----TEEEEEEEETTTCC---EEECC-CCCCSEEEEEECTTSSEEEEEETT---SEEEEEETTTCCEEEEEE
T ss_pred CeEEEEEC----CCceEEEEECCCCC---ceEec-CCccceeeeEECCCCCEEEEECCC---CeEEEEECCCCceEEecc
Confidence 99999886 45788 88887654 34454 322333332333455666655432 478999998777654443
Q ss_pred CCceEEEeecccccCcEEEEEecCC------CCCcEEEEEeC
Q psy1288 338 LDVGTIVGFSGKKKYSEIFYSFMSF------LQPTIIFHCNI 373 (1012)
Q Consensus 338 ~~~~~v~~~~~spdg~~l~~~~ss~------~~p~~l~~~d~ 373 (1012)
...+.+..++|||||+.|++..... ..+..|+++|+
T Consensus 418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 3444455788999999998876543 34568999999
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-09 Score=119.36 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=135.3
Q ss_pred eEEEEEECC-CCceEEEEEEEeCCCCC-CCCCcEEEEEcCCCCCCCCCCcC--hhHHHHHHh------CCeEEEEEcCCC
Q psy1288 403 TKQVFYPSK-DGTKIPMFILSRKGAQL-DGNNPCILYGYGGFAVSLQPGFS--VTKIVFLRD------FNGIYAIPNIRG 472 (1012)
Q Consensus 403 ~~~v~~~s~-DG~~i~~~l~~p~~~~~-~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~------~G~~v~~~d~RG 472 (1012)
.+.+.+.|+ -|....++++.|+++.. .+++|+|++.||.. .|. ......+.. .+++|+.++..
T Consensus 12 v~~~~~~S~~l~~~r~~~VylP~~y~~~~~~yPVlylldG~~------~f~~~~~~~~~l~~~~~~~~~~~IvV~i~~~- 84 (331)
T 3gff_A 12 YQSKRLESRLLKETREYVIALPEGYAQSLEAYPVVYLLDGED------QFDHMASLLQFLSQGTMPQIPKVIIVGIHNT- 84 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEECCTTGGGSCCCEEEEEESSHHH------HHHHHHHHHHHHTCSSSCSSCCCEEEEECCS-
T ss_pred EEEEEEEecCCCCeEEEEEEeCCCCCCCCCCccEEEEecChh------hhHHHHHHHHHHHhhhhcCCCCEEEEEECCC-
Confidence 455566665 47788999999999865 67899999999952 121 122333432 24777877651
Q ss_pred CCCCchhHHhh-------h-------hcCCCcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc
Q psy1288 473 GGEYGERWHDG-------G-------RLLNKQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL 536 (1012)
Q Consensus 473 ~g~~g~~~~~~-------~-------~~~~~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 536 (1012)
....++... + ....+...+.+++ ..+.++.++-.+++.+ +|+|+|+||++++.++.++|++
T Consensus 85 --~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~ 161 (331)
T 3gff_A 85 --NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPL 161 (331)
T ss_dssp --SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSS
T ss_pred --CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchh
Confidence 111111000 0 0011222344443 2344444544455555 7999999999999999999999
Q ss_pred eeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCC
Q psy1288 537 FGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGS 616 (1012)
Q Consensus 537 f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~ 616 (1012)
|.++++.+| . .| |..
T Consensus 162 F~~~~~~S~---~-----------------------------------------------------------~w---~~~ 176 (331)
T 3gff_A 162 FSAYLALDT---S-----------------------------------------------------------LW---FDS 176 (331)
T ss_dssp CSEEEEESC---C-----------------------------------------------------------TT---TTT
T ss_pred hheeeEeCc---h-----------------------------------------------------------hc---CCh
Confidence 999999988 0 01 111
Q ss_pred CCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCC-------CCChHHHHHHHHHHHhhhccCCCCCCcEEEE
Q psy1288 617 PANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDD-------RVSPVHSLKFAATLQEKLRDYPHQTNPLLIR 689 (1012)
Q Consensus 617 p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~-------~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~ 689 (1012)
. ...+.+... ..... ..+.| +++.||..|. +++...+.++...|+.. ...+..+.+.
T Consensus 177 ~---~~~~~~~~~--~~~~~------~~~~~-l~l~~G~~d~~~~~~~~~~~~~~~~~l~~~Lk~~----~~~g~~~~~~ 240 (331)
T 3gff_A 177 P---HYLTLLEER--VVKGD------FKQKQ-LFMAIANNPLSPGFGVSSYHKDLNLAFADKLTKL----APKGLGFMAK 240 (331)
T ss_dssp T---HHHHHHHHH--HHHCC------CSSEE-EEEEECCCSEETTTEECCHHHHHHHHHHHHHHHH----CCTTEEEEEE
T ss_pred H---HHHHHHHHH--hhccc------CCCCe-EEEEeCCCCCCCccchHHHHHHHHHHHHHHHHhc----cCCCceEEEE
Confidence 0 111111100 00001 12344 9999999998 67777889999999886 2236689999
Q ss_pred EeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 690 IETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 690 ~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
++|+++|+... ...+.+.+.|+-...
T Consensus 241 ~~pg~~H~sv~-----~~~~~~~l~~lf~~~ 266 (331)
T 3gff_A 241 YYPEETHQSVS-----HIGLYDGIRHLFKDF 266 (331)
T ss_dssp ECTTCCTTTHH-----HHHHHHHHHHHHGGG
T ss_pred ECCCCCccccH-----HHHHHHHHHHHHhhc
Confidence 99999998533 244566677776553
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-09 Score=110.74 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc-hHhHHHHHHHHHHHcCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN-VFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~-~~~D~~a~~~~l~~~~~~d 510 (1012)
.|.||++||..+... .|.. ....|.++||.|+.+|.||.|..... ....... ..+|+.+.++++...+
T Consensus 16 ~~~vvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~GhG~s~~~-----~~~~~~~~~~~d~~~~~~~l~~~~--- 84 (247)
T 1tqh_A 16 ERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPPEE-----LVHTGPDDWWQDVMNGYEFLKNKG--- 84 (247)
T ss_dssp SCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCHHH-----HTTCCHHHHHHHHHHHHHHHHHHT---
T ss_pred CcEEEEECCCCCChH--HHHH-HHHHHHHCCCEEEecccCCCCCCHHH-----hcCCCHHHHHHHHHHHHHHHHHcC---
Confidence 367899999654332 2333 34556657999999999998843111 0111111 1245555556665543
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEc
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQ 543 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 543 (1012)
.+++.++|+|+||.+++.++.++| ++++|..
T Consensus 85 ~~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~ 115 (247)
T 1tqh_A 85 YEKIAVAGLSLGGVFSLKLGYTVP--IEGIVTM 115 (247)
T ss_dssp CCCEEEEEETHHHHHHHHHHTTSC--CSCEEEE
T ss_pred CCeEEEEEeCHHHHHHHHHHHhCC--CCeEEEE
Confidence 357999999999999999999888 6666644
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=114.82 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=73.2
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh-CCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD-FNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
+|.+|.+... ++.|.||++||..+... .|... ...|.+ +||.|+.+|.||.|...... .
T Consensus 9 ~g~~l~y~~~--------g~~~~vv~lhG~~~~~~--~~~~~-~~~l~~~~g~~v~~~d~~G~G~s~~~~------~--- 68 (272)
T 3fsg_A 9 TRSNISYFSI--------GSGTPIIFLHGLSLDKQ--STCLF-FEPLSNVGQYQRIYLDLPGMGNSDPIS------P--- 68 (272)
T ss_dssp CTTCCEEEEE--------CCSSEEEEECCTTCCHH--HHHHH-HTTSTTSTTSEEEEECCTTSTTCCCCS------S---
T ss_pred cCCeEEEEEc--------CCCCeEEEEeCCCCcHH--HHHHH-HHHHhccCceEEEEecCCCCCCCCCCC------C---
Confidence 6777765432 23468999999754331 23222 222443 59999999999987542211 0
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..++++...+..+++.. .+.+++.++|+|+||.+++.++.++|+++++++...+
T Consensus 69 ~~~~~~~~~~~~~l~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 122 (272)
T 3fsg_A 69 STSDNVLETLIEAIEEI-IGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCP 122 (272)
T ss_dssp CSHHHHHHHHHHHHHHH-HTTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-hCCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECc
Confidence 23344433333333320 1346899999999999999999999999999888876
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-08 Score=126.02 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=141.7
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC-CCceEEEEEEE
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS-GSDWTSMHFKD 189 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~-G~~~~~L~v~d 189 (1012)
|...|++++|... ..||+.+..+++.++|+. +...+..++|||||++|||+.... .....+||++|
T Consensus 20 ~~~S~~~iaf~~~------~~l~~~~~~gg~~~~lt~-------~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d 86 (1045)
T 1k32_A 20 PDIHGDRIIFVCC------DDLWEHDLKSGSTRKIVS-------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 86 (1045)
T ss_dssp EEEETTEEEEEET------TEEEEEETTTCCEEEEEC-------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred cEEeCCEEEEEEC------CcEEEEECCCCcEEEeee-------CCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEE
Confidence 3334789999874 369999998888888886 445788999999999999998762 11246999999
Q ss_pred CCCCceeceeecceee-------eeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc-------cceeeeeee
Q psy1288 190 VATGKEYPEVLHRLKF-------VSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV-------APITSQYIT 255 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~-------~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~-------~~i~~~~~s 255 (1012)
+++|+.++++...... ..++|||||+ |+|++..... ......++....... .......|+
T Consensus 87 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~-----~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~s 160 (1045)
T 1k32_A 87 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQP-----FSSMTCLYRVENDGINFVPLNLGPATHILFA 160 (1045)
T ss_dssp TTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSS-----STTCCEEEEEEGGGTEEEECCSCSCSEEEEE
T ss_pred CCCCCeEEcccCCCcccccccccccccCCCCCE-EEEEECCcCC-----CcccceEEEEECCCCCeEEecCCCcceeeeC
Confidence 9999987766655545 6899999998 8888754211 001123332221110 111123488
Q ss_pred cCCCEEEEEECC----------CCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEE
Q psy1288 256 NEGPQFVFKTNK----------DAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLH 325 (1012)
Q Consensus 256 ~dg~~l~~~tn~----------~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~ 325 (1012)
| | .++...+. .....+|+..+.. ++ .+.+ ......+ ....+.. +.+++....++..+||.+
T Consensus 161 p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~-~~---~~~l-~~~~~~v-~~~~~s~-d~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 161 D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GA---FKKI-VDMSTHV-SSPVIVG-HRIYFITDIDGFGQIYST 231 (1045)
T ss_dssp T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TE---EEEE-ECCSSCC-EEEEEET-TEEEEEECTTSSCEEEEE
T ss_pred C-C-EEEEeccCCCccccccccCCCcCCEEEECCC-CC---eEEC-cCCCCcc-cceEEeC-CEEEEEEeccCceEEEEE
Confidence 8 7 44444321 1234566665443 32 3444 3332222 3334444 577777777777899999
Q ss_pred ecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 326 DLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 326 dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.+++. .+.++... .+....|+|||+.|++.. ...|+.+|+
T Consensus 232 ~~~g~~-~~~l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~ 272 (1045)
T 1k32_A 232 DLDGKD-LRKHTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNP 272 (1045)
T ss_dssp ETTSCS-CEECCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECT
T ss_pred eCCCCc-ceEecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecC
Confidence 985443 34444321 122347889999888874 347888887
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=110.90 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=74.3
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.++.+....+ ..+.|.||++||+.+... .|......++ +.||.|+.+|.||.|.....- ...
T Consensus 12 ~~g~~l~~~~~g~-----~~~~~~vvllHG~~~~~~--~~~~~~~~l~-~~g~~vi~~D~~G~G~S~~~~-------~~~ 76 (293)
T 1mtz_A 12 VNGIYIYYKLCKA-----PEEKAKLMTMHGGPGMSH--DYLLSLRDMT-KEGITVLFYDQFGCGRSEEPD-------QSK 76 (293)
T ss_dssp ETTEEEEEEEECC-----SSCSEEEEEECCTTTCCS--GGGGGGGGGG-GGTEEEEEECCTTSTTSCCCC-------GGG
T ss_pred ECCEEEEEEEECC-----CCCCCeEEEEeCCCCcch--hHHHHHHHHH-hcCcEEEEecCCCCccCCCCC-------CCc
Confidence 3677776654422 112367899999765432 2222223333 469999999999987542211 001
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++++...+..+++.- ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 77 ~~~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 130 (293)
T 1mtz_A 77 FTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG 130 (293)
T ss_dssp CSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESC
T ss_pred ccHHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCC
Confidence 22334433333333321 0225899999999999999999988999999998876
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-07 Score=105.52 Aligned_cols=233 Identities=12% Similarity=0.110 Sum_probs=142.5
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|+++|...... ..|++.+...++....+.. ...+..++|||||++|+++....+ .|+++|++
T Consensus 40 s~dg~~l~~~~~~d----~~i~v~d~~~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~~----~v~v~d~~ 104 (391)
T 1l0q_A 40 SPDGTKVYVANAHS----NDVSIIDTATNNVIATVPA-------GSSPQGVAVSPDGKQVYVTNMASS----TLSVIDTT 104 (391)
T ss_dssp CTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEEC-------SSSEEEEEECTTSSEEEEEETTTT----EEEEEETT
T ss_pred CCCCCEEEEECCCC----CeEEEEECCCCeEEEEEEC-------CCCccceEECCCCCEEEEEECCCC----EEEEEECC
Confidence 47888887764322 3566667666655444431 125678999999999988765433 79999999
Q ss_pred CCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCC
Q psy1288 192 TGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPN 271 (1012)
Q Consensus 192 tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~ 271 (1012)
+++.............++|+|||+.|+++.......-.-+... .+....... ...+....|+|+|+.|++.... .
T Consensus 105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~---~ 179 (391)
T 1l0q_A 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVINTVSV-GRSPKGIAVTPDGTKVYVANFD---S 179 (391)
T ss_dssp TTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC-CSSEEEEEECTTSSEEEEEETT---T
T ss_pred CCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEec-CCCcceEEECCCCCEEEEEeCC---C
Confidence 9987654433444578999999999987764311000000000 011110000 1223344589999998887644 3
Q ss_pred ceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccc
Q psy1288 272 YRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKK 350 (1012)
Q Consensus 272 ~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~sp 350 (1012)
..|+.+|+.+++ ....+... . ....+.+ .+++.+++.........+++|++.+++....+.... .+..+.++|
T Consensus 180 ~~v~~~d~~~~~---~~~~~~~~-~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~ 253 (391)
T 1l0q_A 180 MSISVIDTVTNS---VIDTVKVE-A-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP 253 (391)
T ss_dssp TEEEEEETTTTE---EEEEEECS-S-EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT
T ss_pred CEEEEEECCCCe---EEEEEecC-C-CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc
Confidence 568889987654 22333322 2 2223333 344567766653345789999997776655555432 245678899
Q ss_pred cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 351 KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 351 dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++.++++.+.. ..+..+|+
T Consensus 254 dg~~l~~s~~~d---~~v~v~d~ 273 (391)
T 1l0q_A 254 DGKKVYVALSFX---NTVSVIDT 273 (391)
T ss_dssp TSSEEEEEETTT---TEEEEEET
T ss_pred CCCEEEEEcCCC---CEEEEEEC
Confidence 999888776432 57889998
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=108.89 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=80.5
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
..++...||.+|.+...-+. ..+.||++||+.+......+ ...+...||.|+.+|.||.|.....
T Consensus 16 ~~~~~~~~g~~l~~~~~g~~------~g~~vvllHG~~~~~~~~~~----~~~~~~~~~~vi~~D~~G~G~S~~~----- 80 (317)
T 1wm1_A 16 SGWLDTGDGHRIYWELSGNP------NGKPAVFIHGGPGGGISPHH----RQLFDPERYKVLLFDQRGCGRSRPH----- 80 (317)
T ss_dssp EEEEECSSSCEEEEEEEECT------TSEEEEEECCTTTCCCCGGG----GGGSCTTTEEEEEECCTTSTTCBST-----
T ss_pred eeEEEcCCCcEEEEEEcCCC------CCCcEEEECCCCCcccchhh----hhhccccCCeEEEECCCCCCCCCCC-----
Confidence 34456678988876544321 23568899997653322111 1233335999999999998754211
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......+.++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|...+
T Consensus 81 -~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 138 (317)
T 1wm1_A 81 -ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGI 138 (317)
T ss_dssp -TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred -cccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEecc
Confidence 001123345555555555554 2346799999999999999999999999999888755
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.9e-09 Score=116.37 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=72.9
Q ss_pred CcEEEEEcCCCCCCCCC-------CcChhHH--HHHHhCCeEEEEEcCCC-CCCC-chhHHhh--hh---cCCCcchHhH
Q psy1288 432 NPCILYGYGGFAVSLQP-------GFSVTKI--VFLRDFNGIYAIPNIRG-GGEY-GERWHDG--GR---LLNKQNVFDD 495 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~-------~~~~~~~--~~l~~~G~~v~~~d~RG-~g~~-g~~~~~~--~~---~~~~~~~~~D 495 (1012)
.|.||++||..+..... .|..... ..|+.+||.|+++|.|| .++. +...... +. .......++|
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQD 138 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHH
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHH
Confidence 58999999986555430 1332211 12534699999999999 3432 1110000 00 0001235667
Q ss_pred HHHHHHHHHHcCCCCCCcEE-EEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 496 FQCAAEYLIASGYTQSSRLA-IQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 496 ~~a~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+...+..+++. .+.+++. ++|+|+||.+++.++.++|++++++|...+
T Consensus 139 ~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 187 (377)
T 2b61_A 139 IVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCS 187 (377)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred HHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEecc
Confidence 77777666654 3446887 999999999999999999999999998877
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=115.55 Aligned_cols=203 Identities=16% Similarity=0.080 Sum_probs=115.4
Q ss_pred CCcEEEEEcCCCCCCCCCCcC---hhHHHHHHhCCeEEEEEcCCCCCC--------------------CchhHHhhhhcC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFS---VTKIVFLRDFNGIYAIPNIRGGGE--------------------YGERWHDGGRLL 487 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~d~RG~g~--------------------~g~~~~~~~~~~ 487 (1012)
+.|.||++||..+... .|. ..+...|.+.|+.|+.+|.++... ....|...
T Consensus 4 ~~~~vl~lHG~g~~~~--~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~---- 77 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNGK--VFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYH---- 77 (243)
T ss_dssp CCCEEEEECCTTCCHH--HHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCC----
T ss_pred cCceEEEeCCCCccHH--HHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccC----
Confidence 4689999999754332 222 123345555699999999993221 01122110
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC------CceeEEEEccCCCccccCcceeeeecc
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP------DLFGAAIVQVGNPEISDCGRWLIVHTM 561 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~~~~~i~d~~~~~~~~~~ 561 (1012)
.......|+.++++++.+....+..+++++|+|+||.+++.++.+.+ ..+++++...+ ...
T Consensus 78 ~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g---~~~---------- 144 (243)
T 1ycd_A 78 SEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISG---YSF---------- 144 (243)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESC---CCC----------
T ss_pred CCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecC---CCC----------
Confidence 01122456666666665542223468999999999999998887642 13556665555 000
Q ss_pred cccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcc
Q psy1288 562 KDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDEL 641 (1012)
Q Consensus 562 ~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~ 641 (1012)
........ ..+ .+...+. ..+..+.
T Consensus 145 ---------~~~~~~~~------------------~~~---------~~~~~~~--------------~~~~~~~----- 169 (243)
T 1ycd_A 145 ---------TEPDPEHP------------------GEL---------RITEKFR--------------DSFAVKP----- 169 (243)
T ss_dssp ---------EEECTTST------------------TCE---------EECGGGT--------------TTTCCCT-----
T ss_pred ---------CCcccccc------------------ccc---------ccchhHH--------------HhccCcc-----
Confidence 00000000 000 0000010 0111222
Q ss_pred cCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCC----CcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 642 KGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQT----NPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 642 ~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~----~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
.++.| +|++||.+|+.|++.++.+++..+... + .... .+.+++||.+... ......+.+||.
T Consensus 170 -~~~~P-~l~i~G~~D~~vp~~~~~~~~~~~~~~-------~g~~~~~~~-~~~~~~gH~~~~~----~~~~~~i~~fl~ 235 (243)
T 1ycd_A 170 -DMKTK-MIFIYGASDQAVPSVRSKYLYDIYLKA-------QNGNKEKVL-AYEHPGGHMVPNK----KDIIRPIVEQIT 235 (243)
T ss_dssp -TCCCE-EEEEEETTCSSSCHHHHHHHHHHHHHH-------TTTCTTTEE-EEEESSSSSCCCC----HHHHHHHHHHHH
T ss_pred -cCCCC-EEEEEeCCCCccCHHHHHHHHHHhhhh-------ccccccccE-EEecCCCCcCCch----HHHHHHHHHHHH
Confidence 46777 999999999999999999888888754 2 1233 3456789987542 135667778998
Q ss_pred HhCC
Q psy1288 718 TSGP 721 (1012)
Q Consensus 718 ~~l~ 721 (1012)
++++
T Consensus 236 ~~~~ 239 (243)
T 1ycd_A 236 SSLQ 239 (243)
T ss_dssp HHHC
T ss_pred Hhhh
Confidence 8754
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=109.74 Aligned_cols=122 Identities=12% Similarity=0.033 Sum_probs=80.5
Q ss_pred EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 407 FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 407 ~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
.+...+|.++.+....++ ..|.||++||..+.... .|... ...|+ .||.|+++|.||.|..... ..
T Consensus 6 ~~~~~~g~~l~~~~~G~~------~~~~vvllHG~~~~~~~-~w~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~-----~~ 71 (286)
T 2yys_A 6 GYVPVGEAELYVEDVGPV------EGPALFVLHGGPGGNAY-VLREG-LQDYL-EGFRVVYFDQRGSGRSLEL-----PQ 71 (286)
T ss_dssp EEEECSSCEEEEEEESCT------TSCEEEEECCTTTCCSH-HHHHH-HGGGC-TTSEEEEECCTTSTTSCCC-----CS
T ss_pred eEEeECCEEEEEEeecCC------CCCEEEEECCCCCcchh-HHHHH-HHHhc-CCCEEEEECCCCCCCCCCC-----cc
Confidence 344568888877665331 24689999998653320 24332 34455 5999999999998754220 00
Q ss_pred CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.....+++++.+.+..+++. ...+++.++|||+||.+++.++.++|+ ++++|...+
T Consensus 72 ~~~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~ 127 (286)
T 2yys_A 72 DPRLFTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAP 127 (286)
T ss_dssp CGGGCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESC
T ss_pred CcccCcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCC
Confidence 00022345555555445544 234689999999999999999999999 999988876
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.4e-08 Score=106.78 Aligned_cols=123 Identities=16% Similarity=0.063 Sum_probs=80.4
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
..++...||.+|.+....+. ..|.||++||+.+...... ....+...||.|+.+|.||.|.....
T Consensus 13 ~~~~~~~~g~~l~y~~~G~~------~g~pvvllHG~~~~~~~~~----~~~~~~~~~~~vi~~D~~G~G~S~~~----- 77 (313)
T 1azw_A 13 QGSLKVDDRHTLYFEQCGNP------HGKPVVMLHGGPGGGCNDK----MRRFHDPAKYRIVLFDQRGSGRSTPH----- 77 (313)
T ss_dssp EEEEECSSSCEEEEEEEECT------TSEEEEEECSTTTTCCCGG----GGGGSCTTTEEEEEECCTTSTTSBST-----
T ss_pred cceEEcCCCCEEEEEecCCC------CCCeEEEECCCCCccccHH----HHHhcCcCcceEEEECCCCCcCCCCC-----
Confidence 34456668888876554321 2356889999765332211 11233336999999999998864211
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|...+
T Consensus 78 -~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~ 135 (313)
T 1azw_A 78 -ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGI 135 (313)
T ss_dssp -TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred -cccccccHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEecc
Confidence 011123355555555555554 2345799999999999999999999999999888755
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.2e-08 Score=104.52 Aligned_cols=117 Identities=17% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.||.+|.+....+. +.+.|.||++||...... .|... ...|.+ +|.|+.+|.||.|..... ...
T Consensus 9 ~~g~~l~y~~~g~~----~~~~~~vvllHG~~~~~~--~~~~~-~~~L~~-~~~vi~~D~~G~G~S~~~--------~~~ 72 (266)
T 2xua_A 9 VNGTELHYRIDGER----HGNAPWIVLSNSLGTDLS--MWAPQ-VAALSK-HFRVLRYDTRGHGHSEAP--------KGP 72 (266)
T ss_dssp CSSSEEEEEEESCS----SSCCCEEEEECCTTCCGG--GGGGG-HHHHHT-TSEEEEECCTTSTTSCCC--------SSC
T ss_pred ECCEEEEEEEcCCc----cCCCCeEEEecCccCCHH--HHHHH-HHHHhc-CeEEEEecCCCCCCCCCC--------CCC
Confidence 47888877665331 112578999999654332 45443 455664 799999999998754221 012
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 73 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~ 125 (266)
T 2xua_A 73 YTIEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNT 125 (266)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCHHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecC
Confidence 3345555544444443 2345899999999999999999999999999988766
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.1e-09 Score=116.30 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=76.2
Q ss_pred CCCcEEEEEcCCCCCCCC---CCcC----------hhHHHHHHhCCeEEEEEcCCCCCCCchhHHh-hhhc-CCC-cchH
Q psy1288 430 GNNPCILYGYGGFAVSLQ---PGFS----------VTKIVFLRDFNGIYAIPNIRGGGEYGERWHD-GGRL-LNK-QNVF 493 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~---~~~~----------~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~-~~~~-~~~-~~~~ 493 (1012)
++.|.||++||..+.... ..|. ......|.++||.|+++|.||.|........ .+.. ... ....
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 127 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWI 127 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHH
Confidence 456899999998654321 1122 1345566667999999999997654211100 0000 111 2234
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
+|+.+.++++.+. .+.+++.++|+|+||.+++.++.++ |++++++|...+
T Consensus 128 ~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~ 178 (354)
T 2rau_A 128 SDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDG 178 (354)
T ss_dssp HHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESC
T ss_pred HHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecc
Confidence 6777778877664 2457899999999999999999888 899999998865
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-08 Score=99.39 Aligned_cols=172 Identities=12% Similarity=-0.013 Sum_probs=107.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
++.|.||++||..+... ..|.......+. .++ .++.+|.+ ...++++...+..+++. .
T Consensus 15 g~~~~vv~~HG~~~~~~-~~~~~~~~~~~~-~~~---~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~ 72 (191)
T 3bdv_A 15 SQQLTMVLVPGLRDSDD-EHWQSHWERRFP-HWQ---RIRQREWY---------------QADLDRWVLAIRRELSV--C 72 (191)
T ss_dssp HTTCEEEEECCTTCCCT-TSHHHHHHHHCT-TSE---ECCCSCCS---------------SCCHHHHHHHHHHHHHT--C
T ss_pred CCCceEEEECCCCCCch-hhHHHHHHHhcC-CeE---EEeccCCC---------------CcCHHHHHHHHHHHHHh--c
Confidence 34688999999864432 233333222222 233 44556532 12345555555555554 2
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcc
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLT 589 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt 589 (1012)
. +++.++|+|+||.+++.++.++|+++++++...+ ..+
T Consensus 73 ~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~---~~~-------------------------------------- 110 (191)
T 3bdv_A 73 T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAP---AEP-------------------------------------- 110 (191)
T ss_dssp S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESC---CCG--------------------------------------
T ss_pred C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECC---Ccc--------------------------------------
Confidence 3 7899999999999999999999999999998887 000
Q ss_pred hhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHH
Q psy1288 590 QVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFA 669 (1012)
Q Consensus 590 ~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~ 669 (1012)
. ...+ + +..... ..+.| +|++||.+|+.+++..+.++.
T Consensus 111 --------~------------~~~~--~-------------~~~~~~------~~~~P-~lii~g~~D~~~~~~~~~~~~ 148 (191)
T 3bdv_A 111 --------M------------RFEI--D-------------DRIQAS------PLSVP-TLTFASHNDPLMSFTRAQYWA 148 (191)
T ss_dssp --------G------------GGTC--T-------------TTSCSS------CCSSC-EEEEECSSBTTBCHHHHHHHH
T ss_pred --------c------------cccC--c-------------cccccc------cCCCC-EEEEecCCCCcCCHHHHHHHH
Confidence 0 0000 0 001122 46777 999999999999999887777
Q ss_pred HHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc-cchhhhhHHHHHHHHh
Q psy1288 670 ATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT-KQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 670 ~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~-~~~~~~~~~~~fl~~~ 719 (1012)
+.+ . +.+.+++++||....... ..-+....+.+|+.+.
T Consensus 149 ~~~-~-----------~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 187 (191)
T 3bdv_A 149 QAW-D-----------SELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEIL 187 (191)
T ss_dssp HHH-T-----------CEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTT
T ss_pred Hhc-C-----------CcEEEeCCCCcccccccchhHHHHHHHHHHHHHHh
Confidence 665 2 258888999998754211 1123335556777655
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=112.47 Aligned_cols=125 Identities=11% Similarity=0.022 Sum_probs=76.1
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.++.+....+.+. +.+.+.||++||+.+... .|......+..+.||.|+.+|.||.|.....-. .....
T Consensus 35 ~~g~~l~y~~~G~~~~--~~~g~plvllHG~~~~~~--~w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~~----~~~~~ 106 (330)
T 3nwo_A 35 FGDHETWVQVTTPENA--QPHALPLIVLHGGPGMAH--NYVANIAALADETGRTVIHYDQVGCGNSTHLPD----APADF 106 (330)
T ss_dssp ETTEEEEEEEECCSSC--CTTCCCEEEECCTTTCCS--GGGGGGGGHHHHHTCCEEEECCTTSTTSCCCTT----SCGGG
T ss_pred ecCcEEEEEEecCccC--CCCCCcEEEECCCCCCch--hHHHHHHHhccccCcEEEEECCCCCCCCCCCCC----Ccccc
Confidence 3788888777654321 111225778899765443 344333333332599999999999885432000 00001
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|+++.++|...+
T Consensus 107 ~~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~ 159 (330)
T 3nwo_A 107 WTPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNS 159 (330)
T ss_dssp CCHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESC
T ss_pred ccHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecC
Confidence 1223333333333332 1236799999999999999999999999998887755
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=110.83 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=76.3
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCC-CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGF-AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
.+|.+|.+... + ..|.||++||.. .......|... ...|. .+|.|+.+|.||.|..... ...
T Consensus 12 ~~g~~l~y~~~---G-----~g~~vvllHG~~~~~~~~~~w~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~-------~~~ 74 (282)
T 1iup_A 12 AAGVLTNYHDV---G-----EGQPVILIHGSGPGVSAYANWRLT-IPALS-KFYRVIAPDMVGFGFTDRP-------ENY 74 (282)
T ss_dssp ETTEEEEEEEE---C-----CSSEEEEECCCCTTCCHHHHHTTT-HHHHT-TTSEEEEECCTTSTTSCCC-------TTC
T ss_pred ECCEEEEEEec---C-----CCCeEEEECCCCCCccHHHHHHHH-HHhhc-cCCEEEEECCCCCCCCCCC-------CCC
Confidence 36777765443 2 235799999953 22211134433 24455 5999999999998754211 001
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 75 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~ 128 (282)
T 1iup_A 75 NYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGA 128 (282)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESC
T ss_pred CCCHHHHHHHHHHHHHH--hCCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCC
Confidence 22355555555555544 2346899999999999999999999999999998866
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-08 Score=108.83 Aligned_cols=115 Identities=11% Similarity=-0.016 Sum_probs=75.0
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
+.+|.+|.+... + ..+.||++||...... .|... ...|.++||.|+.+|.||.|..... ..
T Consensus 9 ~~~g~~l~y~~~---g-----~~~pvvllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~--------~~ 69 (279)
T 1hkh_A 9 NSTPIELYYEDQ---G-----SGQPVVLIHGYPLDGH--SWERQ-TRELLAQGYRVITYDRRGFGGSSKV--------NT 69 (279)
T ss_dssp TTEEEEEEEEEE---S-----SSEEEEEECCTTCCGG--GGHHH-HHHHHHTTEEEEEECCTTSTTSCCC--------SS
T ss_pred CCCCeEEEEEec---C-----CCCcEEEEcCCCchhh--HHhhh-HHHHHhCCcEEEEeCCCCCCCCCCC--------CC
Confidence 346666654432 2 1244888999765432 34443 4556667999999999998754321 11
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC-ceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD-LFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~ 545 (1012)
...++++...+..+++. .+.+++.++|||+||.+++.++.++|+ +++++|...+
T Consensus 70 ~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~ 124 (279)
T 1hkh_A 70 GYDYDTFAADLHTVLET--LDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLAS 124 (279)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred CCCHHHHHHHHHHHHHh--cCCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEcc
Confidence 12334444333334333 134689999999999999999999998 9999888766
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-09 Score=115.71 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
+...+...+| ++.+... .++.|.||++||..+... .|......++. +||.|+.+|.||.|........
T Consensus 4 ~~~~~~~~~~-~~~~~~~-------~~~~~~vv~lHG~~~~~~--~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~~~- 71 (279)
T 4g9e_A 4 NYHELETSHG-RIAVRES-------EGEGAPLLMIHGNSSSGA--IFAPQLEGEIG-KKWRVIAPDLPGHGKSTDAIDP- 71 (279)
T ss_dssp EEEEEEETTE-EEEEEEC-------CCCEEEEEEECCTTCCGG--GGHHHHHSHHH-HHEEEEEECCTTSTTSCCCSCH-
T ss_pred EEEEEEcCCc-eEEEEec-------CCCCCeEEEECCCCCchh--HHHHHHhHHHh-cCCeEEeecCCCCCCCCCCCCc-
Confidence 3444555555 4443322 134688999999865432 34433333354 5999999999998765321000
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.....++++...+..+++. .+.+++.++|+|+||.+++.++.++|+ +.+++...+
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~ 126 (279)
T 4g9e_A 72 ----DRSYSMEGYADAMTEVMQQ--LGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGT 126 (279)
T ss_dssp ----HHHSSHHHHHHHHHHHHHH--HTCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESC
T ss_pred ----ccCCCHHHHHHHHHHHHHH--hCCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecC
Confidence 0012344555555444443 234589999999999999999999999 444444433
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.6e-09 Score=115.41 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||...... .| ..++...||.|+++|.||.|.... .......++++...+..+++. ...
T Consensus 81 ~~~vv~~hG~~~~~~--~~----~~~~~~lg~~Vi~~D~~G~G~S~~-------~~~~~~~~~~~a~dl~~~l~~--l~~ 145 (330)
T 3p2m_A 81 APRVIFLHGGGQNAH--TW----DTVIVGLGEPALAVDLPGHGHSAW-------REDGNYSPQLNSETLAPVLRE--LAP 145 (330)
T ss_dssp CCSEEEECCTTCCGG--GG----HHHHHHSCCCEEEECCTTSTTSCC-------CSSCBCCHHHHHHHHHHHHHH--SST
T ss_pred CCeEEEECCCCCccc--hH----HHHHHHcCCeEEEEcCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHH--hCC
Confidence 478999999865432 23 333444599999999999875421 111223445555555555544 245
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 146 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 179 (330)
T 3p2m_A 146 GAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDV 179 (330)
T ss_dssp TCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESC
T ss_pred CCcEEEEECHhHHHHHHHHHhChhhcceEEEEcC
Confidence 6899999999999999999999999999998876
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-08 Score=105.13 Aligned_cols=120 Identities=10% Similarity=-0.023 Sum_probs=82.5
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
...||.+|.+.... +.|.||++||..+... .|... ...|.+ ||.|+.+|.||.|....... ....
T Consensus 18 ~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~~~--~~~~~-~~~l~~-~~~v~~~D~~G~G~S~~~~~---~~~~ 82 (306)
T 3r40_A 18 INTSSGRIFARVGG--------DGPPLLLLHGFPQTHV--MWHRV-APKLAE-RFKVIVADLPGYGWSDMPES---DEQH 82 (306)
T ss_dssp ECCTTCCEEEEEEE--------CSSEEEEECCTTCCGG--GGGGT-HHHHHT-TSEEEEECCTTSTTSCCCCC---CTTC
T ss_pred EEeCCEEEEEEEcC--------CCCeEEEECCCCCCHH--HHHHH-HHHhcc-CCeEEEeCCCCCCCCCCCCC---Cccc
Confidence 34588888776532 3478999999865443 34433 456775 99999999999875422110 0000
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 83 ~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 137 (306)
T 3r40_A 83 TPYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDI 137 (306)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecC
Confidence 123455665555555554 2446899999999999999999999999999998876
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6e-09 Score=114.26 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCCCcee-EEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRPDLFG-AAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKL 586 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~ 586 (1012)
.+|++||+|+|+|+||++++.++..+|++|+ +++..++.| .. +..... ...
T Consensus 7 ~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p--~~------------~~~~~~---~~~----------- 58 (318)
T 2d81_A 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGP--YD------------CARNQY---YTS----------- 58 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCC--TT------------TTSSSC---GGG-----------
T ss_pred CcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEeccc--cc------------ccchHH---HHH-----------
Confidence 4789999999999999999999999999998 766555400 00 000000 000
Q ss_pred CcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHH
Q psy1288 587 PLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSL 666 (1012)
Q Consensus 587 plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~ 666 (1012)
.+. ..++.+...+.......-+++..+. +.+.|++|++||..|.+||+.++.
T Consensus 59 --------~~~--------------~~~~~~~~~~~~~~~~~~~~i~~~~------~l~~~Pvli~HG~~D~vVP~~~s~ 110 (318)
T 2d81_A 59 --------CMY--------------NGYPSITTPTANMKSWSGNQIASVA------NLGQRKIYMWTGSSDTTVGPNVMN 110 (318)
T ss_dssp --------GST--------------TCCCCCHHHHHHHHHHBTTTBCCGG------GGGGCEEEEEEETTCCSSCHHHHH
T ss_pred --------Hhh--------------ccCCCCCCHHHHHHHhhcccCChhH------cCCCCcEEEEeCCCCCCcCHHHHH
Confidence 000 0001111111111111113443333 334456999999999999999999
Q ss_pred HHHHHHHhhhccCCCCC--CcEEEEEeCCCCCCCCCccc----c-------------chhhhhHHHHHHHHh
Q psy1288 667 KFAATLQEKLRDYPHQT--NPLLIRIETKAGHGGGKPTT----K-------------QFPLTIPVIYFYLTS 719 (1012)
Q Consensus 667 ~~~~~L~~~~~~~~~~~--~~~~l~~~p~~gHg~~~~~~----~-------------~~~~~~~~~~fl~~~ 719 (1012)
+++++|++. + ..++++.++++||++..... . .++....++.|+...
T Consensus 111 ~~~~~L~~~-------g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~d~~~~i~~ff~g~ 175 (318)
T 2d81_A 111 QLKAQLGNF-------DNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYDGAGAALKWIYGS 175 (318)
T ss_dssp HHHHHHTTT-------SCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSCHHHHHHHHHHSS
T ss_pred HHHHHHHhc-------CCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCChHHHHHHHHHhcc
Confidence 999999877 4 37999999999999743322 0 145556677888764
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-08 Score=108.73 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=80.9
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.||.+|.+....+ ...|.||++||..+... .|... ...|+ +||.|+.+|.||.|..... ...
T Consensus 17 ~~g~~l~~~~~g~------~~~~~vl~lHG~~~~~~--~~~~~-~~~l~-~~~~v~~~d~~G~G~s~~~--------~~~ 78 (299)
T 3g9x_A 17 VLGERMHYVDVGP------RDGTPVLFLHGNPTSSY--LWRNI-IPHVA-PSHRCIAPDLIGMGKSDKP--------DLD 78 (299)
T ss_dssp ETTEEEEEEEESC------SSSCCEEEECCTTCCGG--GGTTT-HHHHT-TTSCEEEECCTTSTTSCCC--------CCC
T ss_pred eCCeEEEEEecCC------CCCCEEEEECCCCccHH--HHHHH-HHHHc-cCCEEEeeCCCCCCCCCCC--------CCc
Confidence 3788887665532 22468999999865443 34433 34565 5999999999998754221 113
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 79 ~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 131 (299)
T 3g9x_A 79 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 131 (299)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecC
Confidence 3456666666666654 2456799999999999999999999999999888765
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-08 Score=108.29 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=75.6
Q ss_pred ceEEEEEEEeCCCCCCCCCcEEEEEcCCC-CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcch
Q psy1288 414 TKIPMFILSRKGAQLDGNNPCILYGYGGF-AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNV 492 (1012)
Q Consensus 414 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~ 492 (1012)
.++.+... + +.|.||++||.. +......|.......|.+ +|.|+.+|.||.|..... .....+
T Consensus 23 ~~l~y~~~---G-----~g~~vvllHG~~~~~~~~~~w~~~~~~~L~~-~~~vi~~D~~G~G~S~~~-------~~~~~~ 86 (286)
T 2puj_A 23 FNIHYNEA---G-----NGETVIMLHGGGPGAGGWSNYYRNVGPFVDA-GYRVILKDSPGFNKSDAV-------VMDEQR 86 (286)
T ss_dssp EEEEEEEE---C-----CSSEEEEECCCSTTCCHHHHHTTTHHHHHHT-TCEEEEECCTTSTTSCCC-------CCSSCH
T ss_pred EEEEEEec---C-----CCCcEEEECCCCCCCCcHHHHHHHHHHHHhc-cCEEEEECCCCCCCCCCC-------CCcCcC
Confidence 67765432 2 236899999963 222222344432145664 699999999998754221 111234
Q ss_pred HhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 493 FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 493 ~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 87 ~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~ 137 (286)
T 2puj_A 87 GLVNARAVKGLMDA--LDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGP 137 (286)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChHhhheEEEECc
Confidence 55655555555544 2346899999999999999999999999999998876
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-06 Score=94.26 Aligned_cols=238 Identities=13% Similarity=0.056 Sum_probs=137.2
Q ss_pred CeeeCCEEEEEEEcCC--CCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 111 PQRQGDHYFFFHNTGL--QNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~--~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
.+++|+++|.....+. .....|++.+..+++....+... .....+.|||||++++++....+ .|+++
T Consensus 48 ~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~v~~~~~~----~v~~~ 116 (353)
T 3vgz_A 48 YSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-------LKPFGATINNTTQTLWFGNTVNS----AVTAI 116 (353)
T ss_dssp EETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-------SCCCSEEEETTTTEEEEEETTTT----EEEEE
T ss_pred ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-------CCcceEEECCCCCEEEEEecCCC----EEEEE
Confidence 4578888876654321 01357888887766654444321 12457899999999877665433 79999
Q ss_pred ECCCCceece-eecce---------eeeeeEEeeCCCeEEEEecCCCC-CcccCCCCCceEEEEeeccccceeeeeeecC
Q psy1288 189 DVATGKEYPE-VLHRL---------KFVSIAWTHDHKGVFYSNQEPKS-KSKKHSKKNRSSAYHLTVNVAPITSQYITNE 257 (1012)
Q Consensus 189 dl~tg~~~~~-t~~~~---------~~~~~~WSpDG~~l~y~~~~~~~-~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~d 257 (1012)
|+++++.... ..... ....+.|+|||+.+++....... .-..+.. ..++...............|+||
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEECCCCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEecCCCCccceEEECCC
Confidence 9999987542 22111 13568999999988776522100 0000100 01111111100011223358999
Q ss_pred CCEEEEEECCCCCCceEEEEeCCCCcccCcEEeecc--CCCceeeeeE-EecCCEEEEEEEcCceEEEEEEecCCCceee
Q psy1288 258 GPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEE--NKDDVLDWAT-CVANDKLILSYIHHVKNVMHLHDLASGKHLY 334 (1012)
Q Consensus 258 g~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~--~~~~~~~~~~-~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~ 334 (1012)
|+.||+... ...++.+|+.+++. ...+... ........+. ..+++.+++... ....|+++++.+++...
T Consensus 196 g~~l~~~~~----~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 196 GKRLYTTNA----DGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILA 267 (353)
T ss_dssp TTEEEEECT----TSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEE
T ss_pred CCEEEEEcC----CCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEE
Confidence 999888753 45788899877652 1111111 1122222233 345566766543 23678999998887666
Q ss_pred eecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 335 TFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 335 ~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+..+.. ..+.++||++.+++.... ...|+.+|+
T Consensus 268 ~~~~~~~--~~~~~s~dg~~l~v~~~~---~~~v~~~d~ 301 (353)
T 3vgz_A 268 KVAAPES--LAVLFNPARNEAYVTHRQ---AGKVSVIDA 301 (353)
T ss_dssp EEECSSC--CCEEEETTTTEEEEEETT---TTEEEEEET
T ss_pred EEEcCCC--ceEEECCCCCEEEEEECC---CCeEEEEEC
Confidence 6655432 246788999988776543 247999998
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-08 Score=104.56 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=70.3
Q ss_pred cEEEEEcCCC-CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 433 PCILYGYGGF-AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 433 P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
+.||++||.. +......|.......|.+ +|.|+.+|.||.|..... ......++++...+..+++. .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPGWGKSDSV-------VNSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hCC
Confidence 3899999963 212122344332155664 699999999998754321 01123455666555555554 234
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~ 140 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGG 140 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECC
Confidence 6899999999999999999999999999888766
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-08 Score=107.13 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=76.0
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCC-CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGF-AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
..+|.++.+....+ ...|+||++||.. +......|... ...|.+ +|.|+.+|.||.|..... ..
T Consensus 13 ~~~g~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~-~~~L~~-~~~vi~~D~~G~G~S~~~-------~~ 77 (285)
T 1c4x_A 13 PSGTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPI-IPDLAE-NFFVVAPDLIGFGQSEYP-------ET 77 (285)
T ss_dssp CCTTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGG-HHHHHT-TSEEEEECCTTSTTSCCC-------SS
T ss_pred EECCEEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHH-HHHHhh-CcEEEEecCCCCCCCCCC-------CC
Confidence 44777777654311 1246699999963 22222234433 345664 699999999998754221 00
Q ss_pred CcchHhHH----HHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDF----QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~----~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....++++ ...+..+++. ...+++.++|+|+||.+++.++.++|+++.++|...+
T Consensus 78 ~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 136 (285)
T 1c4x_A 78 YPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGS 136 (285)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEecc
Confidence 01234444 4444334433 1246899999999999999999999999999888866
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.7e-09 Score=123.14 Aligned_cols=133 Identities=18% Similarity=0.114 Sum_probs=89.3
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHHHhCCeEEEEEcCCCCC-CCchhHHhhhhcC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGG-EYGERWHDGGRLL 487 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~~~~~~~~~~ 487 (1012)
+.|.. ...++.|.......+.|+||++|||..... ...+....+......|++|+.+|||.+. +|+..-... ...
T Consensus 82 ~edcl--~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~-~~~ 158 (522)
T 1ukc_A 82 SEDCL--FINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVR-QNG 158 (522)
T ss_dssp ESCCC--EEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHH-HSS
T ss_pred CCcCC--EEEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhcc-ccC
Confidence 45554 446677876444567899999999853332 2334443222223459999999999532 222111110 011
Q ss_pred CCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC----CCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR----PDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~ 545 (1012)
.....+.|+.++++|+.++. -.||++|+|+|+|+||.++..++... +.+|+++|+.+|
T Consensus 159 ~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg 223 (522)
T 1ukc_A 159 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESS 223 (522)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESC
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCC
Confidence 23445789999999998863 36999999999999999887776653 568999999988
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=116.99 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=71.3
Q ss_pred CcEEEEEcCCCCCCCCCC-cChhHH--HHHHhCCeEEEEEcCCCC--CCCchhHHhh--hh-----cCCCcchHhHHHHH
Q psy1288 432 NPCILYGYGGFAVSLQPG-FSVTKI--VFLRDFNGIYAIPNIRGG--GEYGERWHDG--GR-----LLNKQNVFDDFQCA 499 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~-~~~~~~--~~l~~~G~~v~~~d~RG~--g~~g~~~~~~--~~-----~~~~~~~~~D~~a~ 499 (1012)
.|.||++||..+...... |..... ..|...||.|+++|.||+ |..+...... +. ......+++|+...
T Consensus 109 ~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a~d 188 (444)
T 2vat_A 109 DNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRI 188 (444)
T ss_dssp CCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHH
T ss_pred CCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHH
Confidence 578999999866554311 332211 124346999999999994 4322110000 00 00012356666666
Q ss_pred HHHHHHcCCCCCCc-EEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 500 AEYLIASGYTQSSR-LAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 500 ~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+..+++. ...++ +.++|||+||.+++.++.++|++++++|...+
T Consensus 189 l~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~ 233 (444)
T 2vat_A 189 HRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIAT 233 (444)
T ss_dssp HHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESC
T ss_pred HHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEec
Confidence 6655554 23457 89999999999999999999999999888877
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.4e-08 Score=108.52 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=75.3
Q ss_pred ceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEc----CCCCCCCchhHHhhhhcCCC
Q psy1288 414 TKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPN----IRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 414 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d----~RG~g~~g~~~~~~~~~~~~ 489 (1012)
..+.+..+.|.+ +..|+||++||.........+-......|. .||.|+.+| .||.|.....
T Consensus 24 ~~~~y~~~g~~~----~~~~~vvllHG~~~~~~~~~~~~~l~~~L~-~g~~Vi~~Dl~~D~~G~G~S~~~---------- 88 (335)
T 2q0x_A 24 PYCKIPVFMMNM----DARRCVLWVGGQTESLLSFDYFTNLAEELQ-GDWAFVQVEVPSGKIGSGPQDHA---------- 88 (335)
T ss_dssp TTEEEEEEEECT----TSSSEEEEECCTTCCTTCSTTHHHHHHHHT-TTCEEEEECCGGGBTTSCSCCHH----------
T ss_pred CceeEEEeccCC----CCCcEEEEECCCCccccchhHHHHHHHHHH-CCcEEEEEeccCCCCCCCCcccc----------
Confidence 556555554321 345789999996433222222122344564 699999995 4776643211
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHh--hCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACIN--QRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~--~~p~~f~a~v~~~~ 545 (1012)
....|+.+.++++.+. .+.+++.++|+|+||.+++.++. .+|++++++|...+
T Consensus 89 -~~~~d~~~~~~~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~ 143 (335)
T 2q0x_A 89 -HDAEDVDDLIGILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGV 143 (335)
T ss_dssp -HHHHHHHHHHHHHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEE
T ss_pred -CcHHHHHHHHHHHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECC
Confidence 1246777777777764 34578999999999999998887 46999999888766
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.6e-08 Score=105.58 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=75.7
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCC-CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGF-AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
.+|.+|.+... + ..|.||++||.. +......|... ...|.+ +|.|+.+|.||.|... . ...
T Consensus 23 ~~g~~l~y~~~---g-----~g~~vvllHG~~~~~~~~~~~~~~-~~~L~~-~~~vi~~Dl~G~G~S~-~-------~~~ 84 (296)
T 1j1i_A 23 AGGVETRYLEA---G-----KGQPVILIHGGGAGAESEGNWRNV-IPILAR-HYRVIAMDMLGFGKTA-K-------PDI 84 (296)
T ss_dssp ETTEEEEEEEE---C-----CSSEEEEECCCSTTCCHHHHHTTT-HHHHTT-TSEEEEECCTTSTTSC-C-------CSS
T ss_pred ECCEEEEEEec---C-----CCCeEEEECCCCCCcchHHHHHHH-HHHHhh-cCEEEEECCCCCCCCC-C-------CCC
Confidence 47887765432 2 236799999963 22212234333 345664 6999999999987542 1 011
Q ss_pred cchHhHHHHHHHHHHHcCCCCC-CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQS-SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+++++...+..+++.- .. +++.++|+|+||.+++.++.++|++++++|...+
T Consensus 85 ~~~~~~~~~dl~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 139 (296)
T 1j1i_A 85 EYTQDRRIRHLHDFIKAM--NFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGS 139 (296)
T ss_dssp CCCHHHHHHHHHHHHHHS--CCSSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCCHHHHHHHHHHHHHhc--CCCCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECC
Confidence 223455554444444432 23 6899999999999999999999999999988876
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-09 Score=120.13 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=109.2
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC--Cc--cccchhhhhHHHHHHHHh
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG--KP--TTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~--~~--~~~~~~~~~~~~~fl~~~ 719 (1012)
.+.|.||++||......... .+...|.. .++.++.++.++ ||.. .. ..+..++..++++|+.+.
T Consensus 150 ~~~P~vl~~hG~~~~~~~~~---~~~~~l~~--------~G~~v~~~d~rG-~G~s~~~~~~~~~~~~~~~~~~~~l~~~ 217 (386)
T 2jbw_A 150 GPHPAVIMLGGLESTKEESF---QMENLVLD--------RGMATATFDGPG-QGEMFEYKRIAGDYEKYTSAVVDLLTKL 217 (386)
T ss_dssp CCEEEEEEECCSSCCTTTTH---HHHHHHHH--------TTCEEEEECCTT-SGGGTTTCCSCSCHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCccHHHHH---HHHHHHHh--------CCCEEEEECCCC-CCCCCCCCCCCccHHHHHHHHHHHHHhC
Confidence 35687777777754333222 22333333 455556665543 4432 11 112234567777888775
Q ss_pred CCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh----hcccccCCCCCCCC---CCCcccCCCCCChh
Q psy1288 720 GPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA----EVLDMLKFNKFTIG---YFWESDYGSPANSS 790 (1012)
Q Consensus 720 l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~g~~~~~~ 790 (1012)
- ..+..+++ |.|+| ++.++..+.+ ++++.+ |+.|+..+...... ..+...+|.....+
T Consensus 218 ~-----~~~~~~i~l~G~S~G-------G~la~~~a~~-~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 284 (386)
T 2jbw_A 218 E-----AIRNDAIGVLGRSLG-------GNYALKSAAC-EPRLAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEE 284 (386)
T ss_dssp T-----TEEEEEEEEEEETHH-------HHHHHHHHHH-CTTCCEEEEESCCSCSTTGGGSCHHHHHHHHHHTTCSSHHH
T ss_pred C-----CcCcccEEEEEEChH-------HHHHHHHHcC-CcceeEEEEeccCChHHHHHhccHHHHHHHHHHhCCCCHHH
Confidence 1 12233444 99998 5555444444 444443 44554443321000 00112356554334
Q ss_pred hh-hHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 791 QF-EYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 791 ~~-~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
.. +.+..+||..++. ++++|+||+||++|. ||+.++.+++++|+.. ++++++++++||++
T Consensus 285 ~~~~~~~~~~~~~~~~-------~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---------~~~~~~~~~~gH~~ 345 (386)
T 2jbw_A 285 ARLHVHAALETRDVLS-------QIACPTYILHGVHDE-VPLSFVDTVLELVPAE---------HLNLVVEKDGDHCC 345 (386)
T ss_dssp HHHHHHHHTCCTTTGG-------GCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---------GEEEEEETTCCGGG
T ss_pred HHHHHHHhCChhhhhc-------ccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---------CcEEEEeCCCCcCC
Confidence 45 6678999999998 899999999999999 9999999999999322 56899999999986
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-06 Score=95.13 Aligned_cols=243 Identities=10% Similarity=0.024 Sum_probs=139.5
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCC-CCC--CCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNN-LSD--DGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~-la~--~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
..+++|+++|...... ..|++.+..+++....+.... ... ........+.|||||++++++.... ...|+
T Consensus 95 ~~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~~i~ 167 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVN----SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK---ESVIW 167 (353)
T ss_dssp EEETTTTEEEEEETTT----TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS---SCEEE
T ss_pred EECCCCCEEEEEecCC----CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC---CceEE
Confidence 3468898877765432 367788877666544333211 000 0122466789999999987665322 23799
Q ss_pred EEECCCCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc---c-ceeeeeeecCCCEE
Q psy1288 187 FKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV---A-PITSQYITNEGPQF 261 (1012)
Q Consensus 187 v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~---~-~i~~~~~s~dg~~l 261 (1012)
++|+++++...... .......++|+|||+.|++...+.... ..+.. ..++........ . .+....|+|+|+.+
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~-~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELI-TIDTA-DNKILSRKKLLDDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEE-EEETT-TTEEEEEEECCCSSSCCCEEEEEEETTTTEE
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEE-EEECC-CCeEEEEEEcCCCCCCcccceEEECCCCCEE
Confidence 99999988754322 222246789999999887765421100 00100 011111111100 0 11123589999999
Q ss_pred EEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCce
Q psy1288 262 VFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVG 341 (1012)
Q Consensus 262 ~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~ 341 (1012)
|+.... ...|+.+|+.+++. ...+..... .......+++.+++....+ ..|.++++.+++....+..+.
T Consensus 246 ~~~~~~---~~~v~~~d~~~~~~---~~~~~~~~~--~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~- 314 (353)
T 3vgz_A 246 FITDSK---AAEVLVVDTRNGNI---LAKVAAPES--LAVLFNPARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDTPT- 314 (353)
T ss_dssp EEEESS---SSEEEEEETTTCCE---EEEEECSSC--CCEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEEECCS-
T ss_pred EEEeCC---CCEEEEEECCCCcE---EEEEEcCCC--ceEEECCCCCEEEEEECCC--CeEEEEECCCCeEEEEEecCC-
Confidence 887632 46789999877652 222222111 1222234556677654433 478899998787666665543
Q ss_pred EEEeecccccCcEEEEEecCC-------CCCcEEEEEe
Q psy1288 342 TIVGFSGKKKYSEIFYSFMSF-------LQPTIIFHCN 372 (1012)
Q Consensus 342 ~v~~~~~spdg~~l~~~~ss~-------~~p~~l~~~d 372 (1012)
....+.++|||+.++++.... .+|..+++++
T Consensus 315 ~~~~~~~s~dg~~l~v~~~~~~~~~~~~~~~~~v~~i~ 352 (353)
T 3vgz_A 315 HPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIA 352 (353)
T ss_dssp EEEEEEECTTSCEEEEEEECCCBTTBCCSSCEEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEEcccccccccccCCCcEEEEe
Confidence 455778999999998877652 2345566655
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-07 Score=100.23 Aligned_cols=124 Identities=21% Similarity=0.192 Sum_probs=80.3
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
+...+.+.||.+|.+....+.+ +.|.||++||..+... .|.. ....|.+ ||.|+.+|.||.|.....-
T Consensus 6 ~~~~~~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~~~--~~~~-~~~~L~~-~~~vi~~Dl~G~G~S~~~~--- 73 (285)
T 3bwx_A 6 EDRYWTSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRNAR--DFED-LATRLAG-DWRVLCPEMRGRGDSDYAK--- 73 (285)
T ss_dssp EEEEEECTTSCEEEEEEECBCT-----TSCCEEEECCTTCCGG--GGHH-HHHHHBB-TBCEEEECCTTBTTSCCCS---
T ss_pred ccCeeecCCCceEEEEEcCCCC-----CCCcEEEECCCCcchh--hHHH-HHHHhhc-CCEEEeecCCCCCCCCCCC---
Confidence 3455667899999877664321 2467899999764432 3443 3455664 9999999999987543210
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
.....+++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...
T Consensus 74 ---~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 74 ---DPMTYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp ---SGGGCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred ---CccccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 00011233333333233322 123579999999999999999999999999988754
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.5e-08 Score=96.24 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=68.5
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCe---EEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG---IYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~---~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
.|.||++||..+... .|.. ....|.++|| .|+.+|++|.+.... ..++++...+..+++.
T Consensus 3 ~~~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~-- 65 (181)
T 1isp_A 3 HNPVVMVHGIGGASF--NFAG-IKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE-- 65 (181)
T ss_dssp CCCEEEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCcCCCHh--HHHH-HHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--
Confidence 467999999764432 3433 4556667798 599999999765422 1233444444444443
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
.+.+++.++|+|+||.+++.++.++ |+.++++|...+
T Consensus 66 ~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~ 104 (181)
T 1isp_A 66 TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGG 104 (181)
T ss_dssp HCCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESC
T ss_pred cCCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcC
Confidence 2456899999999999999999887 888999998877
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.6e-08 Score=109.98 Aligned_cols=121 Identities=14% Similarity=0.048 Sum_probs=80.9
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
..||.+|.+....|++ ...|.||++||..+... .|... ...|.++||.|+.+|.||.|.....- ...
T Consensus 9 ~~~g~~l~y~~~G~~~----~~~~~vv~~hG~~~~~~--~~~~~-~~~l~~~g~~vi~~d~~g~g~s~~~~------~~~ 75 (356)
T 2e3j_A 9 NCRGTRIHAVADSPPD----QQGPLVVLLHGFPESWY--SWRHQ-IPALAGAGYRVVAIDQRGYGRSSKYR------VQK 75 (356)
T ss_dssp EETTEEEEEEEECCTT----CCSCEEEEECCTTCCGG--GGTTT-HHHHHHTTCEEEEECCTTSTTSCCCC------SGG
T ss_pred ccCCeEEEEEEecCCC----CCCCEEEEECCCCCcHH--HHHHH-HHHHHHcCCEEEEEcCCCCCCCCCCC------ccc
Confidence 3478888877765432 24588999999865432 34433 34565579999999999977542110 000
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...+.++...+..+++. .+.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 76 ~~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 129 (356)
T 2e3j_A 76 AYRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISV 129 (356)
T ss_dssp GGSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESS
T ss_pred ccCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECC
Confidence 12234444444444433 2457899999999999999999999999999888765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.77 E-value=5e-06 Score=93.98 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=130.5
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEE
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAW 210 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~W 210 (1012)
.|++.+...++....+. +...+..++|||||++|+++...++ .|+++|+++++.............++|
T Consensus 13 ~v~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~----~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEEECCCCeEEEEee-------cCCCcceEEECCCCCEEEEECCCCC----eEEEEECCCCeEEEEEECCCCccceEE
Confidence 45555665555443333 1123678999999999988765544 799999999987654333335678999
Q ss_pred eeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEe
Q psy1288 211 THDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTL 290 (1012)
Q Consensus 211 SpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l 290 (1012)
+|||+.|++...........+.... +...... ....+....|+|+|+.|++.... ...|+.+|+.+++ ....
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~---~~~~ 153 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVK-TGKSPLGLALSPDGKKLYVTNNG---DKTVSVINTVTKA---VINT 153 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE---EEEE
T ss_pred CCCCCEEEEEECCCCEEEEEECCCC-eEEEEEe-CCCCcceEEECCCCCEEEEEeCC---CCEEEEEECCCCc---EEEE
Confidence 9999999887643110000000001 1111000 01223344689999999888753 4578889987654 2223
Q ss_pred eccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEE
Q psy1288 291 IEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIF 369 (1012)
Q Consensus 291 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~ 369 (1012)
+... ... ..+.+ .+++.+++....+ ..|++||+.+++....+... ..+..+.++|+++.+++..... ....++
T Consensus 154 ~~~~-~~~-~~~~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~-~~~~v~ 227 (391)
T 1l0q_A 154 VSVG-RSP-KGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDK-YFNTVS 227 (391)
T ss_dssp EECC-SSE-EEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECS-SCCEEE
T ss_pred EecC-CCc-ceEEECCCCCEEEEEeCCC--CEEEEEECCCCeEEEEEecC-CCccceEECCCCCEEEEEecCc-CCCcEE
Confidence 3322 222 33333 3445666554433 46889999777655555433 3456778999999888776421 235799
Q ss_pred EEeC
Q psy1288 370 HCNI 373 (1012)
Q Consensus 370 ~~d~ 373 (1012)
.+|+
T Consensus 228 ~~d~ 231 (391)
T 1l0q_A 228 MIDT 231 (391)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9998
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-07 Score=104.47 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=76.9
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
..+|.+|.+... + ..|.||++||..+... .|... ...|.++||.|+++|.||.|.....-. ....
T Consensus 17 ~~~g~~l~y~~~---G-----~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~via~Dl~G~G~S~~~~~----~~~~ 81 (328)
T 2cjp_A 17 AVNGLNMHLAEL---G-----EGPTILFIHGFPELWY--SWRHQ-MVYLAERGYRAVAPDLRGYGDTTGAPL----NDPS 81 (328)
T ss_dssp EETTEEEEEEEE---C-----SSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTCBCCCT----TCGG
T ss_pred cCCCcEEEEEEc---C-----CCCEEEEECCCCCchH--HHHHH-HHHHHHCCcEEEEECCCCCCCCCCcCc----CCcc
Confidence 347877766543 1 2478999999765432 34433 445665699999999999876432100 0001
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+++++...+..+++.-..+.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 82 ~~~~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 137 (328)
T 2cjp_A 82 KFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137 (328)
T ss_dssp GGSHHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cccHHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEcc
Confidence 12233333333333332110246899999999999999999999999999888754
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.5e-07 Score=97.83 Aligned_cols=242 Identities=9% Similarity=-0.025 Sum_probs=132.3
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCce-EEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEA-RVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~-~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
.+|+|+++|...... ..|++.+..+++. ...+.. +......+.|||||++|+ +....+ ....|+++|
T Consensus 47 ~s~dg~~l~~~~~~~----~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l~-~~~~~~-~~~~i~v~d 114 (331)
T 3u4y_A 47 ITSDCSNVVVTSDFC----QTLVQIETQLEPPKVVAIQE------GQSSMADVDITPDDQFAV-TVTGLN-HPFNMQSYS 114 (331)
T ss_dssp ECSSSCEEEEEESTT----CEEEEEECSSSSCEEEEEEE------CSSCCCCEEECTTSSEEE-ECCCSS-SSCEEEEEE
T ss_pred EcCCCCEEEEEeCCC----CeEEEEECCCCceeEEeccc------CCCCccceEECCCCCEEE-EecCCC-CcccEEEEE
Confidence 347888777765432 3688888766653 222221 111122389999999998 433332 223899999
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCC-CcccCCCCCceEEEE--e-eccccceeeeeeecCCCEEEEEE
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKS-KSKKHSKKNRSSAYH--L-TVNVAPITSQYITNEGPQFVFKT 265 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~-~g~~~~~~~~~l~~~--~-~~~~~~i~~~~~s~dg~~l~~~t 265 (1012)
+++++.............++|+|||+.|+++...... ...-+......+... . ...........|+|||+.+|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 115 FLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp TTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred CCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe
Confidence 9999876543333334789999999988777543111 000000000001100 0 00012223446899999998887
Q ss_pred CCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCcee--eeecC-----
Q psy1288 266 NKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHL--YTFPL----- 338 (1012)
Q Consensus 266 n~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~--~~l~~----- 338 (1012)
.. ...+..+|+.+++.......++.. ..........+++.+++... +...|+++++.+|+.. ..+..
T Consensus 195 ~~---~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 268 (331)
T 3u4y_A 195 LI---GNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLID 268 (331)
T ss_dssp TT---TTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred CC---CCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccC
Confidence 54 356888888765520002222222 11222222345456665433 3456899999777651 11111
Q ss_pred C--ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 339 D--VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 339 ~--~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+ ......+.++||++.|+++... -..+.++|+
T Consensus 269 ~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~ 302 (331)
T 3u4y_A 269 PRPLFGANQMALNKTETKLFISANI---SRELKVFTI 302 (331)
T ss_dssp CGGGTTCCCEEECTTSSEEEEEETT---TTEEEEEET
T ss_pred CCCcccccceEECCCCCEEEEecCC---CCcEEEEEe
Confidence 1 1111235789999998877643 346888998
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-08 Score=101.84 Aligned_cols=100 Identities=17% Similarity=0.071 Sum_probs=67.2
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..|.||++||..+... .|... ...|.+ .|.|+.+|.||.|..... . ...++++...+..+++. ..
T Consensus 15 ~~~~vvllHG~~~~~~--~w~~~-~~~L~~-~~~via~Dl~G~G~S~~~------~---~~~~~~~a~dl~~~l~~--l~ 79 (255)
T 3bf7_A 15 NNSPIVLVHGLFGSLD--NLGVL-ARDLVN-DHNIIQVDVRNHGLSPRE------P---VMNYPAMAQDLVDTLDA--LQ 79 (255)
T ss_dssp CCCCEEEECCTTCCTT--TTHHH-HHHHTT-TSCEEEECCTTSTTSCCC------S---CCCHHHHHHHHHHHHHH--HT
T ss_pred CCCCEEEEcCCcccHh--HHHHH-HHHHHh-hCcEEEecCCCCCCCCCC------C---CcCHHHHHHHHHHHHHH--cC
Confidence 3467999999765443 45443 455664 599999999998754221 0 12334443333333332 12
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 114 (255)
T 3bf7_A 80 IDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114 (255)
T ss_dssp CSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcC
Confidence 36899999999999999999999999998887643
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-07 Score=100.97 Aligned_cols=119 Identities=19% Similarity=0.163 Sum_probs=78.7
Q ss_pred CCCC-ceEEEEEEEeCCCCCCCCCcEEEEEcCCC-CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 410 SKDG-TKIPMFILSRKGAQLDGNNPCILYGYGGF-AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 410 s~DG-~~i~~~l~~p~~~~~~~~~P~vv~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
..+| .+|.+... + +++.|.||++||.. +......|... ...|.+ .|.|+.+|.||.|..... .
T Consensus 19 ~~~g~~~l~y~~~---G---~g~~~~vvllHG~~pg~~~~~~w~~~-~~~L~~-~~~via~Dl~G~G~S~~~-------~ 83 (291)
T 2wue_A 19 DVDGPLKLHYHEA---G---VGNDQTVVLLHGGGPGAASWTNFSRN-IAVLAR-HFHVLAVDQPGYGHSDKR-------A 83 (291)
T ss_dssp ESSSEEEEEEEEE---C---TTCSSEEEEECCCCTTCCHHHHTTTT-HHHHTT-TSEEEEECCTTSTTSCCC-------S
T ss_pred EeCCcEEEEEEec---C---CCCCCcEEEECCCCCccchHHHHHHH-HHHHHh-cCEEEEECCCCCCCCCCC-------C
Confidence 3478 78876543 2 23346899999963 22222234433 345654 699999999998754221 0
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 84 ~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 139 (291)
T 2wue_A 84 EHGQFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGP 139 (291)
T ss_dssp CCSSHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCcCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECC
Confidence 1123455555555444443 1346899999999999999999999999999998876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.9e-06 Score=91.90 Aligned_cols=230 Identities=7% Similarity=-0.123 Sum_probs=114.6
Q ss_pred eeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee---cceee
Q psy1288 129 HSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL---HRLKF 205 (1012)
Q Consensus 129 ~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~---~~~~~ 205 (1012)
.-.+|..+...+..+.+.... .......++|||||+ |+.+...++ ...|+++|+++|+...... .....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~-----~~~~p~~~a~spdg~-l~~~~~~~~--~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLA-----ATQNPTYLALSAKDC-LYSVDKEDD--EGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEE-----ECSCCCCEEECTTCE-EEEEEEETT--EEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeeee-----ccCCcceEEEccCCe-EEEEEecCC--CceEEEEEecCCcEEEeeeeecCCCCC
Confidence 455777777666655543211 112345789999999 544433222 3589999998887544322 22334
Q ss_pred eeeEEeeCCCeEEEEecCCCCCcc--cCCCCCceEEEEeeccc---------cceeeeeeecCCCEEEEEECCCCCCceE
Q psy1288 206 VSIAWTHDHKGVFYSNQEPKSKSK--KHSKKNRSSAYHLTVNV---------APITSQYITNEGPQFVFKTNKDAPNYRL 274 (1012)
Q Consensus 206 ~~~~WSpDG~~l~y~~~~~~~~g~--~~~~~~~~l~~~~~~~~---------~~i~~~~~s~dg~~l~~~tn~~~~~~~L 274 (1012)
..++|+|||+.|++.......... .+.......+....... ..+....|+|||+ +++.... ...+
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~---~~~v 164 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG---SDKV 164 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT---TTEE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC---CCEE
Confidence 678999999988877632110000 00011111111111000 0122346899999 6654432 2356
Q ss_pred EEEeCC-CCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCcee--eeec-CCc-----eEEEe
Q psy1288 275 ITIDFD-NFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHL--YTFP-LDV-----GTIVG 345 (1012)
Q Consensus 275 ~~~dl~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~--~~l~-~~~-----~~v~~ 345 (1012)
..++++ ++.......+...............+++.+++....++.-.++.++..+|+.. ..+. .+. .....
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 244 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA 244 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence 666665 33211111111111111212222345556776554444334444443345432 1221 121 34567
Q ss_pred ecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 346 FSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 346 ~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.++|||+.|+++... ...+.++|+
T Consensus 245 i~~spdG~~l~v~~~~---~~~v~v~~~ 269 (347)
T 3hfq_A 245 IRLSHDGHFLYVSNRG---YNTLAVFAV 269 (347)
T ss_dssp EEECTTSCEEEEEEET---TTEEEEEEE
T ss_pred EEECCCCCEEEEEeCC---CCEEEEEEE
Confidence 8899999988776543 245777777
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-06 Score=92.67 Aligned_cols=235 Identities=9% Similarity=-0.008 Sum_probs=126.1
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
.+++++|..-..+ ..|.+.+...++....+.. +.... .++|||||++|+.+....+ .|+++|+++
T Consensus 7 ~~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~------~~~~~-~~~~s~dg~~l~~~~~~~~----~i~~~d~~~ 71 (331)
T 3u4y_A 7 TTSNFGIVVEQHL----RRISFFSTDTLEILNQITL------GYDFV-DTAITSDCSNVVVTSDFCQ----TLVQIETQL 71 (331)
T ss_dssp CCCCEEEEEEGGG----TEEEEEETTTCCEEEEEEC------CCCEE-EEEECSSSCEEEEEESTTC----EEEEEECSS
T ss_pred CCCCEEEEEecCC----CeEEEEeCcccceeeeEEc------cCCcc-eEEEcCCCCEEEEEeCCCC----eEEEEECCC
Confidence 4556555543322 3567777766665544442 22234 8999999998876655333 899999999
Q ss_pred Cce-eceeecceeeee-eEEeeCCCeEEEEecCCCCCcc---cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECC
Q psy1288 193 GKE-YPEVLHRLKFVS-IAWTHDHKGVFYSNQEPKSKSK---KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNK 267 (1012)
Q Consensus 193 g~~-~~~t~~~~~~~~-~~WSpDG~~l~y~~~~~~~~g~---~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~ 267 (1012)
++. ............ ++|+|||+.|+ +.......+. .+... .++...... ........|+|||++||+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 72 EPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLK-NKFISTIPI-PYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp SSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTT-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEET
T ss_pred CceeEEecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECCC-CCeEEEEEC-CCCccceEECCCCCEEEEEecC
Confidence 986 332222222345 89999999888 5433110000 00000 011100000 0122344699999988877654
Q ss_pred CCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCce---eeeecCCceEE
Q psy1288 268 DAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKH---LYTFPLDVGTI 343 (1012)
Q Consensus 268 ~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~---~~~l~~~~~~v 343 (1012)
+.....++.++....-...-..++... ... ..+.+ .+++.+++....+ ..+.+|++.+++. ...++.. ...
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~-~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~~~~~~~~~~~-~~~ 223 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGG-TRP-FNITFTPDGNFAFVANLIG--NSIGILETQNPENITLLNAVGTN-NLP 223 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSS-SSE-EEEEECTTSSEEEEEETTT--TEEEEEECSSTTSCEEEEEEECS-SCC
T ss_pred CCceEEEEEECCCCcEeecCCccccCC-CCc-cceEECCCCCEEEEEeCCC--CeEEEEECCCCcccceeeeccCC-CCC
Confidence 321144555442211000001222222 122 22333 3545676654433 4688899977776 4445433 233
Q ss_pred EeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 344 VGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 344 ~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+.++|||+.+++... ....++++|+
T Consensus 224 ~~~~~spdg~~l~v~~~---~~~~i~~~d~ 250 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTE---STVDVFNFNQ 250 (331)
T ss_dssp CCEEECTTSSEEEEECS---SEEEEEEEET
T ss_pred ceEEECCCCCEEEEEEc---CCCEEEEEEC
Confidence 46778999998877654 2345889998
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-08 Score=108.47 Aligned_cols=248 Identities=12% Similarity=0.039 Sum_probs=130.4
Q ss_pred eEEEEEECC-CCceEEEEEEEeCCCC-----CCCCCcEEEEEcCCCCCCCCCCcC--hhHHHHHHhCCeEEEEEcCC--C
Q psy1288 403 TKQVFYPSK-DGTKIPMFILSRKGAQ-----LDGNNPCILYGYGGFAVSLQPGFS--VTKIVFLRDFNGIYAIPNIR--G 472 (1012)
Q Consensus 403 ~~~v~~~s~-DG~~i~~~l~~p~~~~-----~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~d~R--G 472 (1012)
..++.+.|+ -|....+.++.|+++. .+++.|+|.++||..+... .|. ......+++.|.+++.++.. +
T Consensus 14 ~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~--~w~~~~~~~~~~~~~~~~~v~p~~~p~~ 91 (299)
T 4fol_A 14 LIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPD--NASEKAFWQFQADKYGFAIVFPDTSPRG 91 (299)
T ss_dssp EEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCCHH--HHHHHSCHHHHHHHHTCEEEEECSSCCS
T ss_pred EEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChH--HHHHhchHhHHHHHcCchhhccCCCcce
Confidence 445556664 5788999999998764 3567999999999754322 221 12345566678888888742 1
Q ss_pred CCC---------C--chhHHhhhhc-C-CCcchH-----hHHHHHHHHHHH----cCCCCCCcEEEEecChHHHHHHHHH
Q psy1288 473 GGE---------Y--GERWHDGGRL-L-NKQNVF-----DDFQCAAEYLIA----SGYTQSSRLAIQGGSNGGLLTAACI 530 (1012)
Q Consensus 473 ~g~---------~--g~~~~~~~~~-~-~~~~~~-----~D~~a~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~ 530 (1012)
-.- + +..++..... . .+...+ +++...++.... +...+.++.+|.|+||||+-++.++
T Consensus 92 ~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~a 171 (299)
T 4fol_A 92 DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGY 171 (299)
T ss_dssp TTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHH
T ss_pred eecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHH
Confidence 100 0 0011100000 0 001112 233322221111 1224567899999999999999988
Q ss_pred hhC--CCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccccccc
Q psy1288 531 NQR--PDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGY 608 (1012)
Q Consensus 531 ~~~--p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~ 608 (1012)
.++ |+.|.++.+.+| +.+. ...+. ....+
T Consensus 172 l~~~~~~~~~~~~s~s~---~~~p----------------------~~~~~-----------------~~~~~------- 202 (299)
T 4fol_A 172 LKGYSGKRYKSCSAFAP---IVNP----------------------SNVPW-----------------GQKAF------- 202 (299)
T ss_dssp HHTGGGTCCSEEEEESC---CCCG----------------------GGSHH-----------------HHHHH-------
T ss_pred HhCCCCCceEEEEeccc---ccCc----------------------ccccc-----------------ccccc-------
Confidence 774 678889999888 2210 00000 00000
Q ss_pred ccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChH-HHHHHHHHHHhhhccCCCCCC--c
Q psy1288 609 FWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPV-HSLKFAATLQEKLRDYPHQTN--P 685 (1012)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~-~s~~~~~~L~~~~~~~~~~~~--~ 685 (1012)
...+|... ..+..+++...++.. .+.+.|++++-+|..|...... ....+.++++++ +. .
T Consensus 203 --~~~~g~~~-----~~~~~~d~~~l~~~~---~~~~~~~i~id~G~~D~f~~~~l~~~~f~~a~~~~-------g~~~~ 265 (299)
T 4fol_A 203 --KGYLGEEK-----AQWEAYDPCLLIKNI---RHVGDDRILIHVGDSDPFLEEHLKPELLLEAVKAT-------SWQDY 265 (299)
T ss_dssp --HHHTC----------CGGGCHHHHGGGS---CCCTTCCEEEEEETTCTTHHHHTCTHHHHHHHTTS-------TTTTC
T ss_pred --ccccccch-----hhhhhcCHHHHHHhc---ccCCCCceEEEecCCCcchhhhcCHHHHHHHHHhc-------CCCce
Confidence 00111110 112222332222100 1233455999999988753211 134566666665 54 4
Q ss_pred EEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 686 LLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 686 ~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
++++..++.+|.+-- ....+.+.+.|..++|+.
T Consensus 266 ~~~r~~~GydHsy~f----~~~fi~dhl~fha~~Lgl 298 (299)
T 4fol_A 266 VEIKKVHGFDHSYYF----VSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp EEEEEETTCCSSHHH----HHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHH----HHHHHHHHHHHHHHhcCC
Confidence 889998988897521 224566778898888765
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-07 Score=99.39 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=76.6
Q ss_pred ceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchH
Q psy1288 414 TKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVF 493 (1012)
Q Consensus 414 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 493 (1012)
.+|.+...-+. ...|.||++||...... .|... ...|.++||.|+++|.||.|..... ......++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~~~~ 98 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSWSF--LYRKM-LPVFTAAGGRVVAPDLFGFGRSDKP------TDDAVYTF 98 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCCGG--GGTTT-HHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCcce--eHHHH-HHHHHhCCcEEEEeCCCCCCCCCCC------CCcccCCH
Confidence 77876554221 11467999999765432 45443 3456656899999999998864321 00011234
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|...+
T Consensus 99 ~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 148 (297)
T 2xt0_A 99 GFHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNT 148 (297)
T ss_dssp HHHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESC
T ss_pred HHHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECC
Confidence 4444444444443 1236899999999999999999999999999888765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-06 Score=97.36 Aligned_cols=203 Identities=11% Similarity=0.016 Sum_probs=113.5
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCce
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRS 237 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~ 237 (1012)
.+..++|||||+++|..... ....|+++|+++++.+..........+++|||||+.|+..+.+....- .......
T Consensus 135 ~~~~v~fSpDg~~la~as~~---~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~--~~~~~~~ 209 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSK---VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVI--STVTGSC 209 (365)
T ss_dssp CEEEEEECTTSSCEEEEESC---SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEE--ETTTCCE
T ss_pred CEEEEEEcCCCCEEEEEECC---CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEE--EeccCcc
Confidence 35678999999999876532 224899999999987653333344678999999999888764321000 0000001
Q ss_pred EEEEeecc-ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCc-EEeeccCCCceeeeeEE-ecCCEEEEEE
Q psy1288 238 SAYHLTVN-VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNW-KTLIEENKDDVLDWATC-VANDKLILSY 314 (1012)
Q Consensus 238 l~~~~~~~-~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~-~~l~~~~~~~~~~~~~~-~~~~~l~~~~ 314 (1012)
+....... ...+....|+|+|+.++..+..+.....+...++........ ...+......+ ..+.+ ++++.| +..
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V-~~~~~Spdg~~l-asg 287 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI-TSMDVDMKGELA-VLA 287 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE-EEEEECTTSCEE-EEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe-EeEEECCCCCce-EEE
Confidence 10000000 012333458999998888776544445566666544321000 01112222222 33333 453444 444
Q ss_pred EcCceEEEEEEecCCCceeeee-cCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHLHDLASGKHLYTF-PLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G~~~~~l-~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..++ .|.+||+.+++....+ ......|..++|+|||+.|+-. +. -..|.++|+
T Consensus 288 s~D~--~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~-S~---D~tvrvw~i 341 (365)
T 4h5i_A 288 SNDN--SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV-SA---ANTIHIIKL 341 (365)
T ss_dssp ETTS--CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE-ET---TSEEEEEEC
T ss_pred cCCC--EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE-eC---CCeEEEEEc
Confidence 4443 4788999888765544 3335668889999999876533 22 134666776
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=98.71 E-value=7.8e-08 Score=104.00 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=78.6
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
..+|.+|.+... ++.|.||++||..+... .|... ...|.+ +|.|+.+|.||.|...... .....
T Consensus 14 ~~~g~~l~~~~~--------g~~~~vv~lHG~~~~~~--~~~~~-~~~l~~-~~~vi~~D~~G~G~S~~~~----~~~~~ 77 (297)
T 2qvb_A 14 EIAGKRMAYIDE--------GKGDAIVFQHGNPTSSY--LWRNI-MPHLEG-LGRLVACDLIGMGASDKLS----PSGPD 77 (297)
T ss_dssp EETTEEEEEEEE--------SSSSEEEEECCTTCCGG--GGTTT-GGGGTT-SSEEEEECCTTSTTSCCCS----SCSTT
T ss_pred EECCEEEEEEec--------CCCCeEEEECCCCchHH--HHHHH-HHHHhh-cCeEEEEcCCCCCCCCCCC----Ccccc
Confidence 347888776544 12489999999865443 24332 244554 6999999999987542210 00011
Q ss_pred cchHhHHHHHHHHHHHcCCCCC-CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQS-SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++...+..+++. .+. +++.++|+|+||.+++.++.++|++++++|...+
T Consensus 78 ~~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 132 (297)
T 2qvb_A 78 RYSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEA 132 (297)
T ss_dssp SSCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEE
T ss_pred CcCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEecc
Confidence 13455555555555544 234 6899999999999999999999999999888876
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-08 Score=103.16 Aligned_cols=103 Identities=9% Similarity=-0.079 Sum_probs=69.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
..+.|.||++||..+.. ..|.. ....|++ +|.|+.+|+||.|.... ......++++...+..+++.-
T Consensus 17 ~~~~~~vv~~HG~~~~~--~~~~~-~~~~l~~-~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~l~~~- 83 (267)
T 3fla_A 17 PDARARLVCLPHAGGSA--SFFFP-LAKALAP-AVEVLAVQYPGRQDRRH--------EPPVDSIGGLTNRLLEVLRPF- 83 (267)
T ss_dssp TTCSEEEEEECCTTCCG--GGGHH-HHHHHTT-TEEEEEECCTTSGGGTT--------SCCCCSHHHHHHHHHHHTGGG-
T ss_pred CCCCceEEEeCCCCCCc--hhHHH-HHHHhcc-CcEEEEecCCCCCCCCC--------CCCCcCHHHHHHHHHHHHHhc-
Confidence 35678999999986532 23333 3455664 69999999999764211 111224555555444444432
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCc----eeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDL----FGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~ 545 (1012)
..+++.++|+|+||.+++.++.++|+. +.+++...+
T Consensus 84 -~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~ 123 (267)
T 3fla_A 84 -GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGR 123 (267)
T ss_dssp -TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESC
T ss_pred -CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCC
Confidence 457899999999999999999999985 677776655
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=7.3e-08 Score=103.63 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||...... .|... ...|.+ +|.|+.+|.||.|.....-.. .....+++++...+..+++. ...
T Consensus 20 ~~~vvllHG~~~~~~--~w~~~-~~~L~~-~~~vi~~Dl~G~G~S~~~~~~----~~~~~~~~~~a~dl~~~l~~--l~~ 89 (271)
T 1wom_A 20 KASIMFAPGFGCDQS--VWNAV-APAFEE-DHRVILFDYVGSGHSDLRAYD----LNRYQTLDGYAQDVLDVCEA--LDL 89 (271)
T ss_dssp SSEEEEECCTTCCGG--GGTTT-GGGGTT-TSEEEECCCSCCSSSCCTTCC----TTGGGSHHHHHHHHHHHHHH--TTC
T ss_pred CCcEEEEcCCCCchh--hHHHH-HHHHHh-cCeEEEECCCCCCCCCCCccc----ccccccHHHHHHHHHHHHHH--cCC
Confidence 378999999654332 34432 234554 899999999998864321000 00112344444444444443 234
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|||+||.+++.++.++|++++++|...+
T Consensus 90 ~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~ 123 (271)
T 1wom_A 90 KETVFVGHSVGALIGMLASIRRPELFSHLVMVGP 123 (271)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcC
Confidence 6899999999999999999999999999888866
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-07 Score=98.06 Aligned_cols=114 Identities=12% Similarity=0.020 Sum_probs=79.5
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
||.+|.+....+ ...|.||++||...... .|... ...|+ .+|.|+.+|.||.|..... ....
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~~~--~~~~~-~~~L~-~~~~v~~~D~~G~G~S~~~--------~~~~ 68 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQDHR--LFKNL-APLLA-RDFHVICPDWRGHDAKQTD--------SGDF 68 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCCGG--GGTTH-HHHHT-TTSEEEEECCTTCSTTCCC--------CSCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCcHh--HHHHH-HHHHH-hcCcEEEEccccCCCCCCC--------cccc
Confidence 677776654422 13578999999865443 35543 45565 4799999999998754321 1223
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
.++++...+..+++.- +.+++.++|+|+||.+++.++.++ |++++++|...+
T Consensus 69 ~~~~~~~~~~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~ 121 (264)
T 3ibt_A 69 DSQTLAQDLLAFIDAK--GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDW 121 (264)
T ss_dssp CHHHHHHHHHHHHHHT--TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESC
T ss_pred CHHHHHHHHHHHHHhc--CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecC
Confidence 4555555555555442 345899999999999999999999 999999998876
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.4e-08 Score=104.19 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=77.0
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC---CCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ---PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
+|.+|.+....+. ....|.||++||..+.... ..|.......|++ +|.|+++|.||.|...... ....
T Consensus 19 ~~~~l~y~~~G~~----~~~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G~s~~~~----~~~~ 89 (286)
T 2qmq_A 19 PYGSVTFTVYGTP----KPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQ-NFVRVHVDAPGMEEGAPVF----PLGY 89 (286)
T ss_dssp TTEEEEEEEESCC----CTTCCEEEEECCTTCCHHHHHHHHHTSHHHHHHHT-TSCEEEEECTTTSTTCCCC----CTTC
T ss_pred CCeEEEEEeccCC----CCCCCeEEEeCCCCCCchhhhhhhhhhchhHHHhc-CCCEEEecCCCCCCCCCCC----CCCC
Confidence 5777776654322 1246899999997654321 0122113456764 7999999999976321110 0000
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....++++...+..+++. .+.+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 90 ~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 144 (286)
T 2qmq_A 90 QYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINI 144 (286)
T ss_dssp CCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECC
Confidence 001344554444444433 1335799999999999999999999999999998877
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.4e-07 Score=97.05 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=71.4
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||..... ..|... ...|.++||.|+.+|.||.|...... ....+++++...+..+++.-. ..
T Consensus 4 ~~~vvllHG~~~~~--~~w~~~-~~~L~~~g~rVia~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~ 72 (273)
T 1xkl_A 4 GKHFVLVHGACHGG--WSWYKL-KPLLEAAGHKVTALDLAASGTDLRKI-------EELRTLYDYTLPLMELMESLS-AD 72 (273)
T ss_dssp CCEEEEECCTTCCG--GGGTTH-HHHHHHTTCEEEECCCTTSTTCCCCG-------GGCCSHHHHHHHHHHHHHTSC-SS
T ss_pred CCeEEEECCCCCCc--chHHHH-HHHHHhCCCEEEEecCCCCCCCccCc-------ccccCHHHHHHHHHHHHHHhc-cC
Confidence 36799999976433 245543 45565569999999999987542210 011245555555555555421 13
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.++..++.++|++++++|...+
T Consensus 73 ~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~ 106 (273)
T 1xkl_A 73 EKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAA 106 (273)
T ss_dssp SCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCEEEEecCHHHHHHHHHHHhChHhheEEEEEec
Confidence 6899999999999999999999999999887765
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=100.45 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.+.||++||..+... .|... ...|.+ +|.|+++|.||.|..... . ....+++++...+..+++. ...
T Consensus 16 g~~vvllHG~~~~~~--~~~~~-~~~L~~-~~~vi~~Dl~G~G~S~~~------~-~~~~~~~~~~~dl~~~l~~--l~~ 82 (269)
T 2xmz_A 16 NQVLVFLHGFLSDSR--TYHNH-IEKFTD-NYHVITIDLPGHGEDQSS------M-DETWNFDYITTLLDRILDK--YKD 82 (269)
T ss_dssp SEEEEEECCTTCCGG--GGTTT-HHHHHT-TSEEEEECCTTSTTCCCC------T-TSCCCHHHHHHHHHHHHGG--GTT
T ss_pred CCeEEEEcCCCCcHH--HHHHH-HHHHhh-cCeEEEecCCCCCCCCCC------C-CCccCHHHHHHHHHHHHHH--cCC
Confidence 346999999865443 34443 455664 699999999998754221 0 0022455665555555554 234
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 83 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 116 (269)
T 2xmz_A 83 KSITLFGYSMGGRVALYYAINGHIPISNLILEST 116 (269)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESC
T ss_pred CcEEEEEECchHHHHHHHHHhCchheeeeEEEcC
Confidence 6899999999999999999999999999998876
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-07 Score=99.94 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=77.2
Q ss_pred ceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchH
Q psy1288 414 TKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVF 493 (1012)
Q Consensus 414 ~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 493 (1012)
.+|.+...-+. .+.|.||++||...... .|... ...|++.||.|+++|.||.|..... ......++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~y~~ 99 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTWSY--LYRKM-IPVFAESGARVIAPDFFGFGKSDKP------VDEEDYTF 99 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCCGG--GGTTT-HHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCchh--hHHHH-HHHHHhCCCeEEEeCCCCCCCCCCC------CCcCCcCH
Confidence 78877654331 11468999999765443 45543 3456666899999999998764221 00011234
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.+.+..+++. ...+++.++|||+||.+++.++.++|+++++.|...+
T Consensus 100 ~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~ 149 (310)
T 1b6g_A 100 EFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149 (310)
T ss_dssp HHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESC
T ss_pred HHHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEecc
Confidence 4444444444443 1236899999999999999999999999999888765
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-08 Score=108.73 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=49.8
Q ss_pred HcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
...+|+.++. ++.+|+||+||++|..||+.++.+++++|+..|. +++++++++.||++..
T Consensus 179 ~~~~~~~~~~-------~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~-------~~~~~~~~~~~H~~~~ 238 (277)
T 3bxp_A 179 RLWAAQRLVT-------PASKPAFVWQTATDESVPPINSLKYVQAMLQHQV-------ATAYHLFGSGIHGLAL 238 (277)
T ss_dssp GGSBGGGGCC-------TTSCCEEEEECTTCCCSCTHHHHHHHHHHHHTTC-------CEEEEECCCC------
T ss_pred hhcCHhhccc-------cCCCCEEEEeeCCCCccChHHHHHHHHHHHHCCC-------eEEEEEeCCCCccccc
Confidence 4568888877 7889999999999999999999999999999988 9999999999998754
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=102.83 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=79.8
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
..||.+|.+.... ..|.||++||..+... .|... ...|.++ |.|+.+|.||.|..... ..
T Consensus 16 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~~~--~~~~~-~~~L~~~-~~vi~~D~~G~G~S~~~--------~~ 75 (301)
T 3kda_A 16 EVDGVKLHYVKGG--------QGPLVMLVHGFGQTWY--EWHQL-MPELAKR-FTVIAPDLPGLGQSEPP--------KT 75 (301)
T ss_dssp EETTEEEEEEEEE--------SSSEEEEECCTTCCGG--GGTTT-HHHHTTT-SEEEEECCTTSTTCCCC--------SS
T ss_pred eeCCeEEEEEEcC--------CCCEEEEECCCCcchh--HHHHH-HHHHHhc-CeEEEEcCCCCCCCCCC--------CC
Confidence 3478888766542 3478999999865443 34443 4556654 99999999998754321 11
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCc-EEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSR-LAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++...+..+++. ...++ +.++|+|+||.+++.++.++|+++.++|...+
T Consensus 76 ~~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 130 (301)
T 3kda_A 76 GYSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEA 130 (301)
T ss_dssp CSSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESS
T ss_pred CccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEcc
Confidence 22345555555444443 13456 99999999999999999999999999998876
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=101.36 Aligned_cols=119 Identities=10% Similarity=0.033 Sum_probs=79.6
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
...||.+|.+.... +.|.||++||..+... .|... ...|.+ ++.|+.+|.||.|...... ....
T Consensus 14 ~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~~~--~~~~~-~~~L~~-~~~vi~~D~~G~G~S~~~~----~~~~ 77 (302)
T 1mj5_A 14 IEIKGRRMAYIDEG--------TGDPILFQHGNPTSSY--LWRNI-MPHCAG-LGRLIACDLIGMGDSDKLD----PSGP 77 (302)
T ss_dssp EEETTEEEEEEEES--------CSSEEEEECCTTCCGG--GGTTT-GGGGTT-SSEEEEECCTTSTTSCCCS----SCST
T ss_pred EEECCEEEEEEEcC--------CCCEEEEECCCCCchh--hhHHH-HHHhcc-CCeEEEEcCCCCCCCCCCC----CCCc
Confidence 34578888765431 2478999999765443 33332 234554 5899999999987542210 0001
Q ss_pred CcchHhHHHHHHHHHHHcCCCCC-CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQS-SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....++++...+..+++. ... +++.++|+|+||.+++.++.++|++++++|...+
T Consensus 78 ~~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 133 (302)
T 1mj5_A 78 ERYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEA 133 (302)
T ss_dssp TSSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred ccccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecc
Confidence 113455666555555554 234 6899999999999999999999999999888876
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=100.87 Aligned_cols=94 Identities=15% Similarity=0.066 Sum_probs=66.5
Q ss_pred c-EEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 433 P-CILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 433 P-~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
| .||++||...... .|... ...|. .+|.|+.+|.||.|..... ...+++++ ++.+.+. .+
T Consensus 13 ~~~vvllHG~~~~~~--~w~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~---~~~l~~~--l~- 73 (258)
T 1m33_A 13 NVHLVLLHGWGLNAE--VWRCI-DEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADM---AEAVLQQ--AP- 73 (258)
T ss_dssp SSEEEEECCTTCCGG--GGGGT-HHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHH---HHHHHTT--SC-
T ss_pred CCeEEEECCCCCChH--HHHHH-HHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHH---HHHHHHH--hC-
Confidence 5 7899999754432 45443 45566 4899999999998754221 12233443 3444433 33
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|||+||.+++.++.++|++++++|...+
T Consensus 74 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 107 (258)
T 1m33_A 74 DKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 107 (258)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECC
Confidence 7899999999999999999999999999888765
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-08 Score=104.63 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=45.5
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+|+|++||++|+.||+.++++++++|++.|+ ++++++||+.||++..
T Consensus 151 ~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~-------~v~~~~ypg~gH~i~~ 198 (210)
T 4h0c_A 151 QTPVFISTGNPDPHVPVSRVQESVTILEDMNA-------AVSQVVYPGRPHTISG 198 (210)
T ss_dssp TCEEEEEEEESCTTSCHHHHHHHHHHHHHTTC-------EEEEEEEETCCSSCCH
T ss_pred CCceEEEecCCCCccCHHHHHHHHHHHHHCCC-------CeEEEEECCCCCCcCH
Confidence 38999999999999999999999999999988 9999999999999863
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=103.56 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=72.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhC--CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDF--NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~ 507 (1012)
+..|.||++||..+... .|.. ....|.++ ||.|+.+|.||.|...... ...++|+...+..+++..
T Consensus 34 ~~~~~vvllHG~~~~~~--~~~~-~~~~L~~~~~g~~vi~~D~~G~G~s~~~~---------~~~~~~~~~~l~~~~~~~ 101 (302)
T 1pja_A 34 ASYKPVIVVHGLFDSSY--SFRH-LLEYINETHPGTVVTVLDLFDGRESLRPL---------WEQVQGFREAVVPIMAKA 101 (302)
T ss_dssp -CCCCEEEECCTTCCGG--GGHH-HHHHHHHHSTTCCEEECCSSCSGGGGSCH---------HHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCChh--HHHH-HHHHHHhcCCCcEEEEeccCCCccchhhH---------HHHHHHHHHHHHHHhhcC
Confidence 45678999999755432 3443 34556666 8999999999976422111 124556666666666553
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCCC-ceeEEEEccC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRPD-LFGAAIVQVG 545 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~ 545 (1012)
.+++.++|||+||.++..++.++|+ +++++|...+
T Consensus 102 ---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~ 137 (302)
T 1pja_A 102 ---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 137 (302)
T ss_dssp ---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred ---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECC
Confidence 4789999999999999999999999 6888888766
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9.3e-07 Score=94.62 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=71.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
+..|.||++||...... .|... ...|.++||.|+.+|.||.|...... ....+++++...+..+++.-.
T Consensus 8 ~~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~- 76 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLGAW--IWYKL-KPLLESAGHKVTAVDLSAAGINPRRL-------DEIHTFRDYSEPLMEVMASIP- 76 (264)
T ss_dssp -CCCEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHHHHHHHHHHHSC-
T ss_pred CCCCeEEEECCCccccc--hHHHH-HHHHHhCCCEEEEeecCCCCCCCCCc-------ccccCHHHHHHHHHHHHHHhC-
Confidence 34578999999764332 45543 45565569999999999987542210 011234555544444444311
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..+++.++|||+||.++..++.++|++++++|...+
T Consensus 77 ~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~ 112 (264)
T 2wfl_A 77 PDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSA 112 (264)
T ss_dssp TTCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESS
T ss_pred CCCCeEEEEeChHHHHHHHHHHhChhhhceeEEEee
Confidence 136899999999999999999999999999887755
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.9e-09 Score=126.03 Aligned_cols=62 Identities=6% Similarity=0.020 Sum_probs=53.5
Q ss_pred hHhHcCCCCCCCCCCCCCCCC--CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 793 EYLLGYSPLHNIQGPNELKGK--QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 793 ~~~~~~Sp~~~v~~~~~~~~~--~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+++...||+.+++ + |++|+|++||.+|++ |+.|++++|++|+++|++ ++++.+++.|. +|++
T Consensus 257 ~~w~~~Sp~~~~~-------~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p----~~~~~lvigp~-~H~~ 320 (615)
T 1mpx_A 257 AFWQEQALDKVMA-------RTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKR----NTLNYLVMGPW-RHSQ 320 (615)
T ss_dssp HHHHTTCHHHHHH-------TSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTT----SSSEEEEEESC-CTTG
T ss_pred hhhhhcChhhhhh-------ccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCC----CcCCEEEECCC-CCCC
Confidence 3456789999999 8 999999999999999 999999999999999861 12489999988 6986
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-08 Score=105.57 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=53.2
Q ss_pred HcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+.+|+..+. ++.+|+||+||++|..||+.++.+++++|++.|. +++++++++.||++..
T Consensus 157 ~~~~~~~~~~-------~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~H~~~~ 216 (241)
T 3f67_A 157 SPKHPVDIAV-------DLNAPVLGLYGAKDASIPQDTVETMRQALRAANA-------TAEIVVYPEADHAFNA 216 (241)
T ss_dssp SCCCHHHHGG-------GCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTC-------SEEEEEETTCCTTTTC
T ss_pred CccCHHHhhh-------hcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCC-------CcEEEEECCCCcceec
Confidence 3456666666 7779999999999999999999999999999877 9999999999999974
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-08 Score=112.46 Aligned_cols=184 Identities=10% Similarity=0.035 Sum_probs=106.0
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
.+.|.|+++||+.-..........+...|.. .+..++.+..++ |+-. .......+..+.++|+.+.....
T Consensus 80 ~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~--------~G~~v~~~d~r~-~~~~-~~~~~~~d~~~~~~~l~~~~~~~ 149 (303)
T 4e15_A 80 NQAPLFVFVHGGYWQEMDMSMSCSIVGPLVR--------RGYRVAVMDYNL-CPQV-TLEQLMTQFTHFLNWIFDYTEMT 149 (303)
T ss_dssp TTCCEEEEECCSTTTSCCGGGSCTTHHHHHH--------TTCEEEEECCCC-TTTS-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCcCcCCChhHHHHHHHHHHh--------CCCEEEEecCCC-CCCC-ChhHHHHHHHHHHHHHHHHhhhc
Confidence 4678899999963111111111122333433 345556555442 2221 22234677778888887642221
Q ss_pred CCCCCCCCCccCCccccccCccceeeeccccccc-------cch-----hhhcccccCCCCCCCCCCCcccCCCCCChhh
Q psy1288 724 QRYPETPNKADGSENVRNQDQKLYYHYLGTDQKD-------DIL-----IAEVLDMLKFNKFTIGYFWESDYGSPANSSQ 791 (1012)
Q Consensus 724 ~~~~d~~~~~GgS~g~~~~~~~~~~~~~~~t~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 791 (1012)
. .+...+.|.|.| ++.++..+.... +.+ .+|++|+..+... ........++...
T Consensus 150 ~--~~~i~l~G~S~G-------G~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~---- 215 (303)
T 4e15_A 150 K--VSSLTFAGHXAG-------AHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNL-ESVNPKNILGLNE---- 215 (303)
T ss_dssp T--CSCEEEEEETHH-------HHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTC-TTTSGGGTTCCCT----
T ss_pred C--CCeEEEEeecHH-------HHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhcc-cccchhhhhcCCH----
Confidence 1 122223388888 444443322111 122 2255554333220 0011112233321
Q ss_pred hhHhHcCCCC-CCCCCCCCCCCCC----CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 792 FEYLLGYSPL-HNIQGPNELKGKQ----YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 792 ~~~~~~~Sp~-~~v~~~~~~~~~~----~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
+.+...||+ .++. ++ .+|+||+||++|..||+.++.+|+++|+..|+ +++++++|+.||.
T Consensus 216 -~~~~~~sp~~~~~~-------~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~ 280 (303)
T 4e15_A 216 -RNIESVSPMLWEYT-------DVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGY-------KASFTLFKGYDHF 280 (303)
T ss_dssp -TTTTTTCGGGCCCC-------CGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTC-------CEEEEEEEEEETT
T ss_pred -HHHHHcCchhhccc-------ccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCC-------ceEEEEeCCCCch
Confidence 224567888 6666 54 89999999999999999999999999999988 9999999999994
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6e-07 Score=98.99 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=78.6
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
+|.+|.+... + .++.|.||++||...... .|... ...|.+ +|.|+++|.||.|..... ....
T Consensus 15 ~g~~l~y~~~---G---~g~~~pvvllHG~~~~~~--~w~~~-~~~L~~-~~~via~Dl~G~G~S~~~--------~~~~ 76 (316)
T 3afi_E 15 LGSSMAYRET---G---AQDAPVVLFLHGNPTSSH--IWRNI-LPLVSP-VAHCIAPDLIGFGQSGKP--------DIAY 76 (316)
T ss_dssp TTEEEEEEEE---S---CTTSCEEEEECCTTCCGG--GGTTT-HHHHTT-TSEEEEECCTTSTTSCCC--------SSCC
T ss_pred CCEEEEEEEe---C---CCCCCeEEEECCCCCchH--HHHHH-HHHHhh-CCEEEEECCCCCCCCCCC--------CCCC
Confidence 6777766543 2 123358999999865443 45543 345664 699999999998764221 1123
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++++.+.+..+++.- ..+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 77 ~~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 77 RFFDHVRYLDAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp CHHHHHHHHHHHHHHT--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHc--CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 4556665555555542 346899999999999999999999999999887754
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-08 Score=107.75 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=53.3
Q ss_pred HcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+|...+. ++.+|+||+||++|..||+.++.+++++|+..|+ +++++++++.||++.
T Consensus 193 ~~~~~~~~~~-------~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g~-------~~~~~~~~~~~H~~~ 251 (283)
T 3bjr_A 193 NELAADQHVN-------SDNQPTFIWTTADDPIVPATNTLAYATALATAKI-------PYELHVFKHGPHGLA 251 (283)
T ss_dssp GGGCGGGSCC-------TTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTTC-------CEEEEEECCCSHHHH
T ss_pred HhcCHHHhcc-------CCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCCC-------CeEEEEeCCCCcccc
Confidence 4557777777 7889999999999999999999999999999988 999999999999874
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-06 Score=91.08 Aligned_cols=251 Identities=7% Similarity=-0.031 Sum_probs=119.5
Q ss_pred CCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 107 KYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 107 ~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
..-..+|||+ +|.....++ ...|++.+..++..+++..... .......++|||||++|+++...++ .|.
T Consensus 43 ~~~a~spdg~-l~~~~~~~~--~~~v~~~~~~~g~~~~~~~~~~----~~~~p~~~a~spdg~~l~~~~~~~~----~v~ 111 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDD--EGGIAAWQIDGQTAHKLNTVVA----PGTPPAYVAVDEARQLVYSANYHKG----TAE 111 (347)
T ss_dssp CCEEECTTCE-EEEEEEETT--EEEEEEEEEETTEEEEEEEEEE----ESCCCSEEEEETTTTEEEEEETTTT----EEE
T ss_pred ceEEEccCCe-EEEEEecCC--CceEEEEEecCCcEEEeeeeec----CCCCCEEEEECCCCCEEEEEeCCCC----EEE
Confidence 3334468888 776655332 2455555554555555432110 1123457899999999877654333 677
Q ss_pred EEECC-CCceecee-ecc-----------eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEe--ec-ccccee
Q psy1288 187 FKDVA-TGKEYPEV-LHR-----------LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHL--TV-NVAPIT 250 (1012)
Q Consensus 187 v~dl~-tg~~~~~t-~~~-----------~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~--~~-~~~~i~ 250 (1012)
+++++ +|...... ... .....++|+|||+ ++.+..........+......+.... .. ......
T Consensus 112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 77774 44433221 111 0134589999999 65543221100000000000010000 00 001222
Q ss_pred eeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCC----ceeeeeE-EecCCEEEEEEEcCceEEEEEE
Q psy1288 251 SQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKD----DVLDWAT-CVANDKLILSYIHHVKNVMHLH 325 (1012)
Q Consensus 251 ~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~----~~~~~~~-~~~~~~l~~~~~~~g~~~l~~~ 325 (1012)
...|+|||+.||+....+ ....++.++..+++......+...... .....+. ..+++.|++....+ ..+.+|
T Consensus 191 ~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~--~~v~v~ 267 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELS-SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY--NTLAVF 267 (347)
T ss_dssp EEEECTTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT--TEEEEE
T ss_pred eEEECCCCCEEEEEeCCC-CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC--CEEEEE
Confidence 346999999988876543 234455554433331111111111110 1122233 34555677765544 356667
Q ss_pred ecC-CCce--eeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 326 DLA-SGKH--LYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 326 dl~-~G~~--~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++ +|.. ...++........++++|||+.|++.... ...-.+|.+|.
T Consensus 268 ~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~d~ 317 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN-TDNATLYARDL 317 (347)
T ss_dssp EECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT-TTEEEEEEECT
T ss_pred EECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC-CCcEEEEEEeC
Confidence 764 3322 22222211223467889999988766543 22234555676
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.9e-07 Score=96.84 Aligned_cols=113 Identities=13% Similarity=0.031 Sum_probs=82.9
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcC--------CCCCCCchhHHhh-h-
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNI--------RGGGEYGERWHDG-G- 484 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------RG~g~~g~~~~~~-~- 484 (1012)
.+.+.++.|.+. .++.|+||.+||+. +. + .+||+++.++. ||+.++|. |++. +
T Consensus 91 ~~~~~i~lP~~~--~~p~Pvii~i~~~~-------~~------~-~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~~ 153 (375)
T 3pic_A 91 SFTVTITYPSSG--TAPYPAIIGYGGGS-------LP------A-PAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYGS 153 (375)
T ss_dssp EEEEEEECCSSS--CSSEEEEEEETTCS-------SC------C-CTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEECCCCC--CCCccEEEEECCCc-------cc------c-CCCeEEEEecccccccccCCCCcccee-cccccCC
Confidence 466788889763 47889999998852 11 2 36999999886 55556665 4322 1
Q ss_pred hcCCCcchH--hHHHHHHHHHHHcC--CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 485 RLLNKQNVF--DDFQCAAEYLIASG--YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~--~D~~a~~~~l~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++.-.. -|+..+++||..+. .+|++||+++|+|+||..++++++.. ++++++|..++
T Consensus 154 ~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~ 217 (375)
T 3pic_A 154 SHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQES 217 (375)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESC
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccC
Confidence 112222211 37888999999998 89999999999999999999999886 48999998765
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=98.56 E-value=4.5e-06 Score=90.71 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=78.6
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.+|.+...- ..|.||++||..+... .|... ...|.+ .|.|+++|.||.|..... .......
T Consensus 16 ~~g~~l~y~~~G--------~g~~lvllHG~~~~~~--~w~~~-~~~L~~-~~~via~Dl~G~G~S~~~----~~~~~~~ 79 (294)
T 1ehy_A 16 LPDVKIHYVREG--------AGPTLLLLHGWPGFWW--EWSKV-IGPLAE-HYDVIVPDLRGFGDSEKP----DLNDLSK 79 (294)
T ss_dssp CSSCEEEEEEEE--------CSSEEEEECCSSCCGG--GGHHH-HHHHHT-TSEEEEECCTTSTTSCCC----CTTCGGG
T ss_pred ECCEEEEEEEcC--------CCCEEEEECCCCcchh--hHHHH-HHHHhh-cCEEEecCCCCCCCCCCC----ccccccC
Confidence 478888765432 2367999999865432 45443 455664 699999999998764321 0000001
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++++...+..+++. ...+++.++|||+||.+++.++.++|++++++|...+
T Consensus 80 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 132 (294)
T 1ehy_A 80 YSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 132 (294)
T ss_dssp GCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecC
Confidence 2345555555555554 2346799999999999999999999999999888764
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=98.55 E-value=9.3e-09 Score=124.80 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=52.4
Q ss_pred HhHcCCCCCCCCCCCCCCCC--CCCceEEEcccCCCCCCCcchHHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCCC
Q psy1288 794 YLLGYSPLHNIQGPNELKGK--QYPATLLMTADHDDRVSPVHSLKFAATLQEKL--RDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 794 ~~~~~Sp~~~v~~~~~~~~~--~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++...||+.+++ + |++|+|++||.+|++ ++.|++++|++|+++| + |+.+++.|. +|+.
T Consensus 271 yw~~~Sp~~~~~-------~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~-------~~~lvigp~-~H~~ 332 (652)
T 2b9v_A 271 FWQGQALDKILA-------QRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKA-------PNTLVMGPW-RHSG 332 (652)
T ss_dssp HHHTTCHHHHHH-------HHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSS-------CEEEEEESC-CTTG
T ss_pred HHhcCChhhhhh-------cCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCC-------CCEEEECCC-CCCC
Confidence 356789999999 8 999999999999999 8899999999999998 7 999999887 7986
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-06 Score=92.19 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=131.2
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCC-CceEeeeEEECCCCcEEEEEEeCC-----CC--c
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDD-GTVSLGSYSFSEDGKTLAYCLSSS-----GS--D 181 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~-g~~~i~~~~~SPDGk~iAy~~~~~-----G~--~ 181 (1012)
..+|+|+++|+..... ..|++.+..+++....+.... .+ .......+.|||||++|+++.... .. .
T Consensus 40 ~~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 40 MVAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLST--PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp EECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCB--TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred EEcCCCCEEEEEeCCC----CeEEEEECCCCCeEeeEEcCC--cccccccccceEECCCCCEEEEEeccccccccccccc
Confidence 3458898888765332 357777876666543333110 00 011345789999999998875321 10 1
Q ss_pred eEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEE
Q psy1288 182 WTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQF 261 (1012)
Q Consensus 182 ~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l 261 (1012)
...|+++|+++++.............+.|+|||+.|++.... . -..+.. ..++.......... ....|+|||+.+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--i-~~~d~~-~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--L-HVMDPE-AGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--E-EEEETT-TTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCe--E-EEEECC-CCcEeeeeeccccC-CCceeCCCccEE
Confidence 248999999998865432223334678999999988877210 0 000100 01111111111000 111478888877
Q ss_pred EEEECCCCC--------------------CceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEE
Q psy1288 262 VFKTNKDAP--------------------NYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNV 321 (1012)
Q Consensus 262 ~~~tn~~~~--------------------~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 321 (1012)
++....+.. ...|+.+|+.+++.. ...+ ..............+++.+++. ...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~~~s~dg~~l~~~-----~~~ 261 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMDVFYFSTAVNPAKTRAFGA-----YNV 261 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECSSCEEEEEECTTSSEEEEE-----ESE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCCCceeeEEECCCCCEEEEe-----CCe
Confidence 655422110 115788888765521 1111 1111122222223354566665 257
Q ss_pred EEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 322 MHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 322 l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
|++|++.+++....+..+. .+..+.++||++.+++... ...|.++|+
T Consensus 262 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~----~~~i~v~d~ 308 (337)
T 1pby_B 262 LESFDLEKNASIKRVPLPH-SYYSVNVSTDGSTVWLGGA----LGDLAAYDA 308 (337)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEEECTTSCEEEEESB----SSEEEEEET
T ss_pred EEEEECCCCcCcceecCCC-ceeeEEECCCCCEEEEEcC----CCcEEEEEC
Confidence 9999998777655555432 2345678999998877522 367999998
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-07 Score=94.31 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
+.||++||..... ..|... ...|.++||.|+.+|.||.|...... ....+++++.+.+..+++.-. ..+
T Consensus 4 ~~vvllHG~~~~~--~~w~~~-~~~L~~~g~~via~Dl~G~G~S~~~~-------~~~~~~~~~a~dl~~~l~~l~-~~~ 72 (257)
T 3c6x_A 4 AHFVLIHTICHGA--WIWHKL-KPLLEALGHKVTALDLAASGVDPRQI-------EEIGSFDEYSEPLLTFLEALP-PGE 72 (257)
T ss_dssp CEEEEECCTTCCG--GGGTTH-HHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHTHHHHHHHHTSC-TTC
T ss_pred CcEEEEcCCccCc--CCHHHH-HHHHHhCCCEEEEeCCCCCCCCCCCc-------ccccCHHHHHHHHHHHHHhcc-ccC
Confidence 5789999975433 235543 45666579999999999987642210 011245555555555555421 135
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.++|||+||.++..++.++|+++++.|...+
T Consensus 73 ~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~ 105 (257)
T 3c6x_A 73 KVILVGESCGGLNIAIAADKYCEKIAAAVFHNS 105 (257)
T ss_dssp CEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CeEEEEECcchHHHHHHHHhCchhhheEEEEec
Confidence 899999999999999999999999999887754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.5e-06 Score=90.46 Aligned_cols=214 Identities=10% Similarity=-0.022 Sum_probs=114.9
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCce-EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecc-----e
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTV-SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHR-----L 203 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~-~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~-----~ 203 (1012)
.|++.+..+++....+... +.. ....++|||||++++++....+ .|+++|+++++... ..... .
T Consensus 12 ~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIA-----DAGPTPMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTTEEEEEEECT-----TCTTCCCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred eEEEEECCCCcEEEEEEcC-----CCCCCccceEEcCCCCEEEEEeCCCC----eEEEEECCCCCeEeeEEcCCcccccc
Confidence 5666676655544333311 100 2567899999999887765433 79999999998754 22221 1
Q ss_pred eeeeeEEeeCCCeEEEEecCC----C----CCcc---cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCc
Q psy1288 204 KFVSIAWTHDHKGVFYSNQEP----K----SKSK---KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNY 272 (1012)
Q Consensus 204 ~~~~~~WSpDG~~l~y~~~~~----~----~~g~---~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~ 272 (1012)
....++|+|||+.|++..... . ..+. .+... .+....... ...+....|+|||+.|++. + .
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~-----~ 154 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKAFEA-PRQITMLAWARDGSKLYGL-G-----R 154 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEEEEC-CSSCCCEEECTTSSCEEEE-S-----S
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEEEeC-CCCcceeEECCCCCEEEEe-C-----C
Confidence 346789999999988874210 0 0000 00000 011110000 0122233589999998887 2 4
Q ss_pred eEEEEeCCCCcccCcEEeeccCC-CceeeeeEEecCCEEEEEEEcCc---------------------eEEEEEEecCCC
Q psy1288 273 RLITIDFDNFAESNWKTLIEENK-DDVLDWATCVANDKLILSYIHHV---------------------KNVMHLHDLASG 330 (1012)
Q Consensus 273 ~L~~~dl~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~g---------------------~~~l~~~dl~~G 330 (1012)
.|+.+|+.+++. ...+.... .... ....+++.+++....++ ...|+++++.++
T Consensus 155 ~i~~~d~~~~~~---~~~~~~~~~~~~~--~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 155 DLHVMDPEAGTL---VEDKPIQSWEAET--YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp SEEEEETTTTEE---EEEECSTTTTTTT--BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred eEEEEECCCCcE---eeeeeccccCCCc--eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 588888876541 12222111 0111 11122222222111111 126889999777
Q ss_pred ceeeeecCC--ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 331 KHLYTFPLD--VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 331 ~~~~~l~~~--~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.. .+... ...+..+.++||++.+++. + ..|+.+|+
T Consensus 230 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~-~-----~~v~~~d~ 267 (337)
T 1pby_B 230 EMA-MREVRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDL 267 (337)
T ss_dssp CEE-EEEEEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEET
T ss_pred Cce-EeecCCCCCceeeEEECCCCCEEEEe-C-----CeEEEEEC
Confidence 653 33322 2234467899999988877 2 57999998
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.6e-08 Score=113.70 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=89.6
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhHHHHHHhCCeEEEEEcCCC-CCCCchhHHhhhhcC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTKIVFLRDFNGIYAIPNIRG-GGEYGERWHDGGRLL 487 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG-~g~~g~~~~~~~~~~ 487 (1012)
+.|+..+ .++.|......++.|+||++|||....... .|... .++.+.|++|+.+|+|- ..+++.... ...
T Consensus 95 ~edcl~l--nv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~~--~la~~~g~vvv~~nYRlg~~gf~~~~~---~~~ 167 (542)
T 2h7c_A 95 SEDCLYL--NIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGL--ALAAHENVVVVTIQYRLGIWGFFSTGD---EHS 167 (542)
T ss_dssp ESCCCEE--EEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCH--HHHHHHTCEEEEECCCCHHHHHCCCSS---TTC
T ss_pred CCCCcEE--EEEECCCCCCCCCCCEEEEECCCcccCCCccccCHH--HHHhcCCEEEEecCCCCccccCCCCCc---ccC
Confidence 4566554 567787654456789999999985433222 24433 34444699999999993 222211110 111
Q ss_pred CCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
.+...+.|+.++++|+.++. .+||++|+|+|+|+||.++..++.. .+.+|+++|+.+|
T Consensus 168 ~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg 230 (542)
T 2h7c_A 168 RGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESG 230 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESC
T ss_pred ccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcC
Confidence 23345789999999998762 3799999999999999999888876 3579999999988
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=105.17 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=43.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+|+||+||++|+.|+ ++.+++++|++.|+ ++++++||+.||+|.
T Consensus 252 ~~~~P~li~~G~~D~~~~--~~~~~~~~l~~~g~-------~~~~~~~~g~~H~f~ 298 (326)
T 3ga7_A 252 RDVPPCFIASAEFDPLID--DSRLLHQTLQAHQQ-------PCEYKMYPGTLHAFL 298 (326)
T ss_dssp SCCCCEEEEEETTCTTHH--HHHHHHHHHHHTTC-------CEEEEEETTCCTTGG
T ss_pred cCCCCEEEEecCcCcCHH--HHHHHHHHHHHCCC-------cEEEEEeCCCccchh
Confidence 467899999999999994 99999999999988 999999999999995
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.4e-06 Score=94.42 Aligned_cols=112 Identities=19% Similarity=0.052 Sum_probs=82.1
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcC--------CCCCCCchhHHhhhh-
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNI--------RGGGEYGERWHDGGR- 485 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~--------RG~g~~g~~~~~~~~- 485 (1012)
.+.+.++.|.+ .++.|+||.+||+.. + + .+||+++.++. +|+.++|. +++.-.
T Consensus 124 sf~~~i~lP~g---~~P~Pvii~~~~~~~----~---------~-~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 124 SFSASIRKPSG---AGPFPAIIGIGGASI----P---------I-PSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEECCSS---SCCEEEEEEESCCCS----C---------C-CTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEECCCC---CCCccEEEEECCCcc----c---------c-CCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 35788999976 478899999887421 0 2 36999999886 44455666 443221
Q ss_pred -cCCCcch--HhHHHHHHHHHHH----cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 486 -LLNKQNV--FDDFQCAAEYLIA----SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 486 -~~~~~~~--~~D~~a~~~~l~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..++.-. .-++..+++||.. +..+|++||+++|+|+||..++++++.. ++++++|..++
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~s 251 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQES 251 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESC
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecC
Confidence 1222211 1377888999999 7899999999999999999999999886 48899998875
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-07 Score=101.66 Aligned_cols=94 Identities=13% Similarity=-0.060 Sum_probs=61.8
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||..+... .|.. ....|.+ |+.|+.+|.||.|.... ......++++...+..+++.-. ..
T Consensus 51 ~~~lvllHG~~~~~~--~~~~-l~~~L~~-~~~v~~~D~~G~G~S~~--------~~~~~~~~~~a~~~~~~l~~~~-~~ 117 (280)
T 3qmv_A 51 PLRLVCFPYAGGTVS--AFRG-WQERLGD-EVAVVPVQLPGRGLRLR--------ERPYDTMEPLAEAVADALEEHR-LT 117 (280)
T ss_dssp SEEEEEECCTTCCGG--GGTT-HHHHHCT-TEEEEECCCTTSGGGTT--------SCCCCSHHHHHHHHHHHHHHTT-CS
T ss_pred CceEEEECCCCCChH--HHHH-HHHhcCC-CceEEEEeCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHhC-CC
Confidence 378999999765443 3444 3456665 99999999999764311 1122334455444444443321 34
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCcee
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFG 538 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~ 538 (1012)
.++.++|+|+||.+++.++.++|++..
T Consensus 118 ~~~~lvG~S~Gg~va~~~a~~~p~~~~ 144 (280)
T 3qmv_A 118 HDYALFGHSMGALLAYEVACVLRRRGA 144 (280)
T ss_dssp SSEEEEEETHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEeCHhHHHHHHHHHHHHHcCC
Confidence 689999999999999999988776554
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=103.98 Aligned_cols=182 Identities=12% Similarity=-0.031 Sum_probs=103.0
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
.+.|.|+++||+.-..........+...|... .+..++.+..+..-.. .+...+++....++|+.+. +
T Consensus 78 ~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~-------~g~~vv~~dyr~~p~~--~~~~~~~D~~~a~~~l~~~-~-- 145 (322)
T 3fak_A 78 QAGKAILYLHGGGYVMGSINTHRSMVGEISRA-------SQAAALLLDYRLAPEH--PFPAAVEDGVAAYRWLLDQ-G-- 145 (322)
T ss_dssp CTTCEEEEECCSTTTSCCHHHHHHHHHHHHHH-------HTSEEEEECCCCTTTS--CTTHHHHHHHHHHHHHHHH-T--
T ss_pred CCccEEEEEcCCccccCChHHHHHHHHHHHHh-------cCCEEEEEeCCCCCCC--CCCcHHHHHHHHHHHHHHc-C--
Confidence 35688999999732222233333445555543 3556666655533221 2334567888888898887 2
Q ss_pred CCCCCCCCCc--cCCccccccCccceeeeccccccccc----h-----hhhcccccCCCCC----CC-CCCCc-------
Q psy1288 724 QRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDI----L-----IAEVLDMLKFNKF----TI-GYFWE------- 780 (1012)
Q Consensus 724 ~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~----~-----~~~~~~~~~~~~~----~~-~~~~~------- 780 (1012)
.+..++. |.|.| ++.++......++. + .+|++|+...... .. .+...
T Consensus 146 ---~d~~ri~l~G~S~G-------G~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (322)
T 3fak_A 146 ---FKPQHLSISGDSAG-------GGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPMVAPGGINKM 215 (322)
T ss_dssp ---CCGGGEEEEEETHH-------HHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTCCSCCSSHHHHH
T ss_pred ---CCCceEEEEEcCcC-------HHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccCcccCHHHHHHH
Confidence 1234444 88988 44443322221221 1 2244443211000 00 00000
Q ss_pred --ccCCCCCChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEE
Q psy1288 781 --SDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIR 858 (1012)
Q Consensus 781 --~~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 858 (1012)
...+..+ . .....||+...- +..+|+||+||++|..+ .++.+++++|+..|+ +++++
T Consensus 216 ~~~~~~~~~-~----~~~~~sp~~~~~-------~~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~-------~~~~~ 274 (322)
T 3fak_A 216 AARYLNGAD-A----KHPYASPNFANL-------KGLPPLLIHVGRDEVLL--DDSIKLDAKAKADGV-------KSTLE 274 (322)
T ss_dssp HHHHHTTSC-T----TCTTTCGGGSCC-------TTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTC-------CEEEE
T ss_pred HHHhcCCCC-C----CCcccCCCcccc-------cCCChHhEEEcCcCccH--HHHHHHHHHHHHcCC-------CEEEE
Confidence 0001110 0 012357775444 45579999999999875 589999999999988 99999
Q ss_pred EeCCCCCCCC
Q psy1288 859 IETKAGHGGG 868 (1012)
Q Consensus 859 ~~~~~gH~~~ 868 (1012)
++|+.+|++.
T Consensus 275 ~~~g~~H~~~ 284 (322)
T 3fak_A 275 IWDDMIHVWH 284 (322)
T ss_dssp EETTCCTTGG
T ss_pred EeCCceeehh
Confidence 9999999985
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-05 Score=86.55 Aligned_cols=96 Identities=18% Similarity=0.130 Sum_probs=61.4
Q ss_pred eCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy1288 114 QGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATG 193 (1012)
Q Consensus 114 dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg 193 (1012)
.++.+|..-... ..|++.+..+++....+... +......++|||||++++++....+ .|+++|++++
T Consensus 9 ~~~~~~v~~~~~----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~----~i~~~d~~t~ 75 (349)
T 1jmx_B 9 AGHEYMIVTNYP----NNLHVVDVASDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYG----DIYGIDLDTC 75 (349)
T ss_dssp TTCEEEEEEETT----TEEEEEETTTTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTT----EEEEEETTTT
T ss_pred CCCEEEEEeCCC----CeEEEEECCCCcEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCC----cEEEEeCCCC
Confidence 455565554432 46788887766554444321 1113457899999998877654332 7999999998
Q ss_pred ceecee-ecc------eeeeeeEEeeCCCeEEEEec
Q psy1288 194 KEYPEV-LHR------LKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 194 ~~~~~t-~~~------~~~~~~~WSpDG~~l~y~~~ 222 (1012)
+..... ... .....++|+|||+.|++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 111 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 111 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEcc
Confidence 865422 221 11367899999999888763
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-05 Score=87.36 Aligned_cols=245 Identities=9% Similarity=-0.036 Sum_probs=123.5
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|+|+++|...... +.-.+|..+..++..+.+..... + ..+..++|||||++|+++...++ .|+++|+
T Consensus 45 ~spdg~~l~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~s~dg~~l~~~~~~~~----~i~~~d~ 113 (343)
T 1ri6_A 45 VSPDKRYLYVGVRPE--FRVLAYRIAPDDGALTFAAESAL----P-GSLTHISTDHQGQFVFVGSYNAG----NVSVTRL 113 (343)
T ss_dssp ECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEEC----S-SCCSEEEECTTSSEEEEEETTTT----EEEEEEE
T ss_pred ECCCCCEEEEeecCC--CeEEEEEecCCCCceeecccccc----C-CCCcEEEEcCCCCEEEEEecCCC----eEEEEEC
Confidence 458899888766432 35566766644555554432110 1 14567899999999887765433 5788887
Q ss_pred CCCc---eeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEE--E--Eeec-cccceeeeeeecCCCEEE
Q psy1288 191 ATGK---EYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSA--Y--HLTV-NVAPITSQYITNEGPQFV 262 (1012)
Q Consensus 191 ~tg~---~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~--~--~~~~-~~~~i~~~~~s~dg~~l~ 262 (1012)
+.|. .............++|+|||+.|+............+.....++. . .... ....+....|+|+|+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 4333 222111222346789999999887765221100000000001110 0 0000 001223345899999988
Q ss_pred EEECCCCCCceEEEEeCCC--CcccCcEEee--ccC--CCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecC--CCcee
Q psy1288 263 FKTNKDAPNYRLITIDFDN--FAESNWKTLI--EEN--KDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLA--SGKHL 333 (1012)
Q Consensus 263 ~~tn~~~~~~~L~~~dl~~--~~~~~~~~l~--~~~--~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~--~G~~~ 333 (1012)
+.... ...+..++++. +.......+. +.. .......+.+ .+++.+++....+ ..+.+|++. ++...
T Consensus 194 ~~~~~---~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~--~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 194 CVNEL---NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA--SLITVFSVSEDGSVLS 268 (343)
T ss_dssp EEETT---TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSCCEE
T ss_pred EEeCC---CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC--CEEEEEEEcCCCCceE
Confidence 87643 34566666643 2210011111 111 0111122333 3445666554333 457777775 33322
Q ss_pred --eeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 334 --YTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 334 --~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..++... .+..+.++||++.|++.... ...-.+|.+|.
T Consensus 269 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~-~~~v~v~~~d~ 308 (343)
T 1ri6_A 269 KEGFQPTET-QPRGFNVDHSGKYLIAAGQK-SHHISVYEIVG 308 (343)
T ss_dssp EEEEEECSS-SCCCEEECTTSSEEEEECTT-TCEEEEEEEET
T ss_pred EeeeecCCC-ccceEEECCCCCEEEEecCC-CCeEEEEEEcC
Confidence 2222222 25567889999987776532 22234555676
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-05 Score=87.80 Aligned_cols=242 Identities=12% Similarity=0.033 Sum_probs=137.3
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+| ++.+++....+ ..|++.+..+++....+....+. .+...+..+.|+|||+.++- ...+ ..|+++|++
T Consensus 131 s~-~~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s-~~~d----~~v~~~d~~ 199 (433)
T 3bws_A 131 ID-NTRLAIPLLED----EGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVS-QMQA----NAVHVFDLK 199 (433)
T ss_dssp SS-SSEEEEEBTTS----SSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEE-EGGG----TEEEEEETT
T ss_pred eC-CCeEEEEeCCC----CeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEE-ECCC----CEEEEEECC
Confidence 45 66777664332 23566666666655544422221 12346778999999986653 3322 279999999
Q ss_pred CCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCC-
Q psy1288 192 TGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDA- 269 (1012)
Q Consensus 192 tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~- 269 (1012)
+++...... .......++|+|||+.++++.........-+.. ..+..... .....+....|+|+|+.|++......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRKT-DKIGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEEC-CCCSEEEEEEECTTSSEEEEEEEESCT
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEEe-cCCCCceEEEEcCCCCEEEEEECCCCc
Confidence 987654222 233357789999999887776321100000000 00111000 00122334468999999988774322
Q ss_pred ---CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEee
Q psy1288 270 ---PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGF 346 (1012)
Q Consensus 270 ---~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~ 346 (1012)
.+..|+.+|+.+++ ....+... ..........+++.+++....+ ..+.+|++.+++....++.. ..+..+
T Consensus 278 ~~~~dg~i~~~d~~~~~---~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~--~~v~v~d~~~~~~~~~~~~~-~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEK---LIDTIGPP-GNKRHIVSGNTENKIYVSDMCC--SKIEVYDLKEKKVQKSIPVF-DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTE---EEEEEEEE-ECEEEEEECSSTTEEEEEETTT--TEEEEEETTTTEEEEEEECS-SSEEEE
T ss_pred cccCCCeEEEEECCCCc---EEeeccCC-CCcceEEECCCCCEEEEEecCC--CEEEEEECCCCcEEEEecCC-CCCCeE
Confidence 35689999987654 12222211 1122222223445676665444 47888999777665555433 335578
Q ss_pred cccccCcEEEEEecCCCCC-----------cEEEEEeC
Q psy1288 347 SGKKKYSEIFYSFMSFLQP-----------TIIFHCNI 373 (1012)
Q Consensus 347 ~~spdg~~l~~~~ss~~~p-----------~~l~~~d~ 373 (1012)
.++|+++.+++........ ..|+.+|+
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 8999999888776543222 48999998
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-08 Score=108.11 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=74.5
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.||.++.+... +..|.||++||..+... .|... ...|. +||.|+.+|.||.|.....-.. .....
T Consensus 12 ~~g~~~~~~~~--------g~~p~vv~lHG~~~~~~--~~~~~-~~~l~-~g~~v~~~D~~G~G~s~~~~~~---~~~~~ 76 (304)
T 3b12_A 12 VGDVTINCVVG--------GSGPALLLLHGFPQNLH--MWARV-APLLA-NEYTVVCADLRGYGGSSKPVGA---PDHAN 76 (304)
Confidence 36776655432 24578999999765332 34332 34566 6999999999998754321100 00111
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..++++...+..+++. ...+++.++|+|+||.+++.++.++|++++++|...+
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (304)
T 3b12_A 77 YSFRAMASDQRELMRT--LGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDI 129 (304)
Confidence 2233333333333332 2346799999999999999999999999999888876
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-07 Score=111.59 Aligned_cols=129 Identities=18% Similarity=0.129 Sum_probs=86.4
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC---CcChhHHHHHHhCCeEEEEEcCCCC-CCCchhHHhhhh
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP---GFSVTKIVFLRDFNGIYAIPNIRGG-GEYGERWHDGGR 485 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~d~RG~-g~~g~~~~~~~~ 485 (1012)
+.|...| .++.|... ..++.|+||++|||....... .+... .+..+.|++|+.+|||.+ -+++... ...
T Consensus 93 ~edcl~l--~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~~--~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~ 165 (543)
T 2ha2_A 93 SEDCLYL--NVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGR--FLAQVEGAVLVSMNYRVGTFGFLALP--GSR 165 (543)
T ss_dssp ESCCCEE--EEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTH--HHHHHHCCEEEEECCCCHHHHHCCCT--TCS
T ss_pred CCcCCeE--EEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCChH--HHHhcCCEEEEEecccccccccccCC--CCC
Confidence 5566555 45567642 245679999999985333222 23332 233336999999999953 1111110 001
Q ss_pred cCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
...+...+.|+.++++|+.++. -.||++|.|+|+|+||.+++.++... +.+|+++|+.+|
T Consensus 166 ~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg 230 (543)
T 2ha2_A 166 EAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSG 230 (543)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESC
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccC
Confidence 1223345789999999998863 26999999999999999998877653 468999999988
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-07 Score=101.05 Aligned_cols=102 Identities=18% Similarity=0.084 Sum_probs=70.2
Q ss_pred CcEEEEEcC-CCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 432 NPCILYGYG-GFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 432 ~P~vv~~hG-g~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
.|.||++|| |.... ...|.. ....|. +||.|+.+|.||.|.... .......++++...+..+++.- .
T Consensus 41 ~p~vv~lHG~G~~~~-~~~~~~-~~~~L~-~~~~vi~~D~~G~G~S~~-------~~~~~~~~~~~~~~l~~~l~~~--~ 108 (292)
T 3l80_A 41 NPCFVFLSGAGFFST-ADNFAN-IIDKLP-DSIGILTIDAPNSGYSPV-------SNQANVGLRDWVNAILMIFEHF--K 108 (292)
T ss_dssp SSEEEEECCSSSCCH-HHHTHH-HHTTSC-TTSEEEEECCTTSTTSCC-------CCCTTCCHHHHHHHHHHHHHHS--C
T ss_pred CCEEEEEcCCCCCcH-HHHHHH-HHHHHh-hcCeEEEEcCCCCCCCCC-------CCcccccHHHHHHHHHHHHHHh--C
Confidence 489999997 32111 112322 234455 599999999999875420 1122234666666666666553 3
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|||+||.+++.++.++|++++++|...+
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 143 (292)
T 3l80_A 109 FQSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEP 143 (292)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESC
T ss_pred CCCeEEEEEchhHHHHHHHHHhCchheeeEEEECC
Confidence 45899999999999999999999999999998875
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.4e-09 Score=111.06 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=42.4
Q ss_pred CCCCceEEEcccCCCCCCCcc--hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVH--SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++.+|+||+||++|..||..+ +++++++|++.|+ +++++++|+.||++.
T Consensus 213 ~~~~p~li~~G~~D~~v~~~~~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 263 (282)
T 3fcx_A 213 GSQLDILIDQGKDDQFLLDGQLLPDNFIAACTEKKI-------PVVFRLQEDYDHSYY 263 (282)
T ss_dssp ---CCEEEEEETTCHHHHTTSSCHHHHHHHHHHTTC-------CEEEEEETTCCSSHH
T ss_pred cCCCcEEEEcCCCCcccccchhhHHHHHHHHHHcCC-------ceEEEECCCCCcCHH
Confidence 457999999999999997766 6699999999988 999999999999874
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-08 Score=107.64 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=49.8
Q ss_pred HcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcc-hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+|+..++ +..+.+.+|+||+||++|..||... +.+++++|++.|+ +++++++|++||++.
T Consensus 198 ~~~~~~~~~~---~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 261 (280)
T 3ls2_A 198 AQYDSCKLMA---KAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQKDY-------PLTLEMQTGYDHSYF 261 (280)
T ss_dssp GGGCHHHHHH---TCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHHHTC-------CEEEEEETTCCSSHH
T ss_pred HhcCHHHHHH---hccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHHhCC-------CceEEEeCCCCCchh
Confidence 4556665555 0001125799999999999999854 9999999999998 999999999999874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00024 Score=78.63 Aligned_cols=217 Identities=13% Similarity=0.061 Sum_probs=125.1
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|++++....+ +.-.|| +...++....+.. ....+..+.|||||++|+.... +| .|+++|+.
T Consensus 41 s~~~~~l~~~~~d---g~i~vw--d~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~~-dg----~i~iwd~~ 104 (369)
T 3zwl_B 41 NKEGDLLFSCSKD---SSASVW--YSLNGERLGTLDG------HTGTIWSIDVDCFTKYCVTGSA-DY----SIKLWDVS 104 (369)
T ss_dssp CTTSCEEEEEESS---SCEEEE--ETTTCCEEEEECC------CSSCEEEEEECTTSSEEEEEET-TT----EEEEEETT
T ss_pred cCCCCEEEEEeCC---CEEEEE--eCCCchhhhhhhh------cCCcEEEEEEcCCCCEEEEEeC-CC----eEEEEECC
Confidence 4678777655432 234444 4444443333321 2345788999999999986543 33 79999999
Q ss_pred CCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecc----------------------ccce
Q psy1288 192 TGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVN----------------------VAPI 249 (1012)
Q Consensus 192 tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~----------------------~~~i 249 (1012)
+++.............+.|+|||+.|+....+... ......++..... ...+
T Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMK------NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTT------BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccC------CCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99876543344456789999999988877643100 0000111111000 0134
Q ss_pred eeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecC
Q psy1288 250 TSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLA 328 (1012)
Q Consensus 250 ~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~ 328 (1012)
....|+|+++.|+..+. ...|...|+.+... ....+...... +..+.+ .+++.++.. ..+ ..+.+|++.
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~~-v~~~~~~~~~~~l~~~-~~d--~~i~v~d~~ 248 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYE--YVDSIDLHEKS-ISDMQFSPDLTYFITS-SRD--TNSFLVDVS 248 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTE--EEEEEECCSSC-EEEEEECTTSSEEEEE-ETT--SEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcE--eEEEEecCCCc-eeEEEECCCCCEEEEe-cCC--ceEEEEECC
Confidence 44568999998887664 35688888876321 12222222222 333333 343444443 333 368889998
Q ss_pred CCceeeeecCCceEEEeecccccCcEEEEEecC
Q psy1288 329 SGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 329 ~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+++....+.. ...+..+.++|+++.+++....
T Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 280 (369)
T 3zwl_B 249 TLQVLKKYET-DCPLNTAVITPLKEFIILGGGQ 280 (369)
T ss_dssp TCCEEEEEEC-SSCEEEEEECSSSSEEEEEECC
T ss_pred CCceeeeecC-CCCceeEEecCCCceEEEeecC
Confidence 7776555553 3345577889999988876644
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6.2e-05 Score=84.07 Aligned_cols=250 Identities=11% Similarity=0.041 Sum_probs=121.9
Q ss_pred CCCCeeeCCEEEEEEEcC-CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 108 YSSPQRQGDHYFFFHNTG-LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 108 ~s~p~~dG~~~yy~~~~~-~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
.-..+|||+++|.....+ ..+.-.+|..+..++..+.+..... .+ .....+.+ ||++|+.+...++ .|.
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~---~~-~~p~~~~~--dg~~l~~~~~~~~----~v~ 123 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT---MG-ADPCYLTT--NGKNIVTANYSGG----SIT 123 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC---SS-SCEEEEEE--CSSEEEEEETTTT----EEE
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc---CC-CCcEEEEE--CCCEEEEEECCCC----EEE
Confidence 334568999888876542 2245667888776566555543111 01 11223344 9998766543332 678
Q ss_pred EEECCCCc-eecee----ecc----------eeeeeeEEeeCCCeEEEEecCCCCCcc--cCCCCC---ce-EEEE----
Q psy1288 187 FKDVATGK-EYPEV----LHR----------LKFVSIAWTHDHKGVFYSNQEPKSKSK--KHSKKN---RS-SAYH---- 241 (1012)
Q Consensus 187 v~dl~tg~-~~~~t----~~~----------~~~~~~~WSpDG~~l~y~~~~~~~~g~--~~~~~~---~~-l~~~---- 241 (1012)
++++++.. ..... ..+ .....++|+|||+.|+++......... .+.... .+ +...
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 88886433 21110 001 012458999999988887532110000 010000 00 1000
Q ss_pred --eeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC-CceeeeeE-EecCCEEEEEEEcC
Q psy1288 242 --LTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK-DDVLDWAT-CVANDKLILSYIHH 317 (1012)
Q Consensus 242 --~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~-~~~~~~~~-~~~~~~l~~~~~~~ 317 (1012)
............|+|||+.+|+....+ ..+..++++++.......+..... ......+. ..+++.|++....
T Consensus 204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~---~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~- 279 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDGKFAYLINEIG---GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL- 279 (361)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTT---CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-
T ss_pred ceecCCCCCCeEEEEcCCCCEEEEEcCCC---CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-
Confidence 000012223446999999988876432 346666665443111111111111 11112233 3455667665544
Q ss_pred ceEEEEEEec--CCCcee--eeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 318 VKNVMHLHDL--ASGKHL--YTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 318 g~~~l~~~dl--~~G~~~--~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+...+.+|++ .+|+.. ..+.. ......++++|||+.|++.... ..--.+|.+|.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~-~~~v~v~~~d~ 337 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD-TNVIQIFERDQ 337 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT-TTEEEEEEECT
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECC-CCCEEEEEEEC
Confidence 1234555555 355532 22222 1223467889999988776532 22345666777
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=98.39 E-value=4.1e-07 Score=106.69 Aligned_cols=129 Identities=17% Similarity=0.124 Sum_probs=84.8
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC---CCCCcChhHHHHHHhCC-eEEEEEcCCCCC-CCchhHHhh-
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS---LQPGFSVTKIVFLRDFN-GIYAIPNIRGGG-EYGERWHDG- 483 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~---~~~~~~~~~~~~l~~~G-~~v~~~d~RG~g-~~g~~~~~~- 483 (1012)
+.|+..+ .++.|.. ..++.|+||++|||.... ....+.. ..|+++| ++|+.+|||.+. +++......
T Consensus 81 ~edcl~l--~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~---~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~ 153 (498)
T 2ogt_A 81 SEDGLYL--NIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDG---TAFAKHGDVVVVTINYRMNVFGFLHLGDSFG 153 (498)
T ss_dssp BSCCCEE--EEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCC---HHHHHHHTCEEEEECCCCHHHHCCCCTTTTC
T ss_pred CCCCcEE--EEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCH---HHHHhCCCEEEEeCCCcCchhhccCchhhcc
Confidence 5566555 4556752 346789999999986322 2222332 2344345 999999999421 121110000
Q ss_pred -hhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 484 -GRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 484 -~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
.....+...+.|+.++++|+.++. .+||++|+|+|+|+||.+++.++... ..+|+++|+.+|
T Consensus 154 ~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg 221 (498)
T 2ogt_A 154 EAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSG 221 (498)
T ss_dssp GGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESC
T ss_pred ccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccC
Confidence 011122345789999999998873 26899999999999999998877653 468999999988
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-07 Score=101.70 Aligned_cols=49 Identities=22% Similarity=0.172 Sum_probs=45.9
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
..+|+|++||++|+.||+.++++++++|++.|+ ++++.+||+.||++..
T Consensus 204 ~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~-------~~~~~~y~g~gH~i~~ 252 (285)
T 4fhz_A 204 SKPPVLLVHGDADPVVPFADMSLAGEALAEAGF-------TTYGHVMKGTGHGIAP 252 (285)
T ss_dssp CCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTC-------CEEEEEETTCCSSCCH
T ss_pred hcCcccceeeCCCCCcCHHHHHHHHHHHHHCCC-------CEEEEEECCCCCCCCH
Confidence 349999999999999999999999999999988 9999999999999853
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.6e-05 Score=85.97 Aligned_cols=196 Identities=8% Similarity=-0.091 Sum_probs=118.4
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCce
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRS 237 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~ 237 (1012)
.+..+.|||||++++++...+| .|+++|+++++.............++|+|||+.|+.......... ..+..
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~----~~dg~ 284 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISE----DISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQE----SGGGR 284 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTT----EEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTC----SCCEE
T ss_pred CeeEEEEcCCCCEEEEEecCCC----cEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccc----cCCCe
Confidence 4678899999999887765444 799999999886543333334578999999998887764211000 00111
Q ss_pred EEEEeecc---------ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecC
Q psy1288 238 SAYHLTVN---------VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VAN 307 (1012)
Q Consensus 238 l~~~~~~~---------~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ 307 (1012)
+....... ...+....|+|+|+.+++.... ...+..+|+.+++ ....+... ..+ ..+.+ .++
T Consensus 285 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~v~v~d~~~~~---~~~~~~~~-~~~-~~~~~s~dg 356 (433)
T 3bws_A 285 LGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC---CSKIEVYDLKEKK---VQKSIPVF-DKP-NTIALSPDG 356 (433)
T ss_dssp EEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETT---TTEEEEEETTTTE---EEEEEECS-SSE-EEEEECTTS
T ss_pred EEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecC---CCEEEEEECCCCc---EEEEecCC-CCC-CeEEEcCCC
Confidence 11111000 0122334589999999888654 3578888887654 22233322 222 23333 344
Q ss_pred CEEEEEEEcCc------------eEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 308 DKLILSYIHHV------------KNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 308 ~~l~~~~~~~g------------~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.+++....+. ...|++|++.+++....+... ..+..+.++||++.|++.... -..+..+++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~---d~~i~v~~~ 430 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFL---DHQIRVYRR 430 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETT---TTEEEEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECC---CCeEEEEEe
Confidence 56666654432 238999999888765555443 345678899999988766432 235677766
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-07 Score=107.39 Aligned_cols=133 Identities=21% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCC-CcChhH-H--HHHHhCCeEEEEEcCCCCCCCchhHH-hhh
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQP-GFSVTK-I--VFLRDFNGIYAIPNIRGGGEYGERWH-DGG 484 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~-~--~~l~~~G~~v~~~d~RG~g~~g~~~~-~~~ 484 (1012)
+.|... ..++.|......++.|+||++|||....... .+.... . .+....|++|+.+|||.+. +|.... +..
T Consensus 94 sedcl~--l~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~-~gf~~~~~~~ 170 (534)
T 1llf_A 94 SEDCLT--INVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVAS-WGFLAGDDIK 170 (534)
T ss_dssp CSCCCE--EEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHH
T ss_pred CCCCeE--EEEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCC-CCCCCccccc
Confidence 445544 4667887644456789999999985433222 233321 1 1122358999999999743 111000 000
Q ss_pred hcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--------CCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--------PDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~~ 545 (1012)
....+...+.|+.++++|+.++. -.||++|+|+|+|+||.+++.++... +.+|+++|+.+|
T Consensus 171 ~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg 242 (534)
T 1llf_A 171 AEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSG 242 (534)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESC
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhcc
Confidence 11233445789999999998862 36999999999999999888776653 458999999988
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-08 Score=109.11 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=50.0
Q ss_pred HcCCCCCCCCCCCCCCCCC--CCceEEEcccCCCCCCCcc-hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQ--YPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~--~~p~l~~~g~~D~rv~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+|+..++ ++ .+|+||+||++|..||..+ +++++++|++.|+ +++++++|++||++.
T Consensus 200 ~~~~~~~~~~-------~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 261 (280)
T 3i6y_A 200 REYDASLLMR-------AAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNNY-------PLELRSHEGYDHSYY 261 (280)
T ss_dssp GGGCHHHHHH-------HCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHTTC-------CEEEEEETTCCSSHH
T ss_pred HhcCHHHHHH-------hcCCCccEEEEEeCCCccccchhhHHHHHHHHHHcCC-------CceEEEeCCCCccHH
Confidence 4556666665 44 3899999999999999755 9999999999988 999999999999873
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=101.58 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=45.6
Q ss_pred CCCCceEEEcccCCCCCCCcch-HHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHS-LKFAATLQEKLRDYPHQTNP-LLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~-~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~gH~~~~~ 870 (1012)
++..|+||+||++|..||..+. +++.++|++.|+ + ++++++|+.||++..|
T Consensus 314 ~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~-------~~~~l~~~~gagH~~~~p 366 (422)
T 3k2i_A 314 KAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGK-------EKPQIICYPGTGHYIEPP 366 (422)
T ss_dssp GCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTC-------CCCEEEEETTCCSCCCST
T ss_pred HCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-------CCCEEEEECCCCCEECCC
Confidence 6669999999999999999876 689999999988 7 9999999999998543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0002 Score=85.04 Aligned_cols=244 Identities=11% Similarity=0.027 Sum_probs=127.0
Q ss_pred EeeeEEECC----CCcEEEEEEeCCCCceEEEEEEECCCCceeceeec------------ceeeeeeEEeeCCCeEEEEe
Q psy1288 158 SLGSYSFSE----DGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH------------RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 158 ~i~~~~~SP----DGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~------------~~~~~~~~WSpDG~~l~y~~ 221 (1012)
....+.+|| ||++|+.+....+ +|.++|.++++.+..... ......+.+|||++.+++..
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~----~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPP----QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESS----EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCC----eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 356789999 9999866543333 788999999987642211 11245789999998877664
Q ss_pred cCCCCCcccC--CCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeecc----CC
Q psy1288 222 QEPKSKSKKH--SKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEE----NK 295 (1012)
Q Consensus 222 ~~~~~~g~~~--~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~----~~ 295 (1012)
......-..+ ......+.. ... ...+....|+|||++|++..+. ...|..+|+.+++ ....+.- .+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~-i~~-~~~~~~~~~spdg~~l~va~~~---~~~v~v~D~~tg~---l~~~i~~g~~ph~ 370 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTS-IGA-APFLHDGGWDSSHRYFMTAANN---SNKVAVIDSKDRR---LSALVDVGKTPHP 370 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEE-EEC-CSSCCCEEECTTSCEEEEEEGG---GTEEEEEETTTTE---EEEEEECSSSBCC
T ss_pred CCCCeEEEEEecCCCcceeEE-ecc-CcCccCceECCCCCEEEEEecC---CCeEEEEECCCCe---EEEeeccCCCCCC
Confidence 3211000000 000111000 000 0111223589999998877653 2457778887765 2222221 11
Q ss_pred CceeeeeEEecCCEEEEEEEcCceEEEEEEecCC-------CceeeeecCCceEEEeecccccCcEEEEEecCCCC---C
Q psy1288 296 DDVLDWATCVANDKLILSYIHHVKNVMHLHDLAS-------GKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQ---P 365 (1012)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~-------G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~---p 365 (1012)
.....+ ...+++.++++. ..+...|.+|+.++ ++..+.+..+.+....+.++||++.|++...-..+ -
T Consensus 371 g~g~~~-~~p~~g~~~~s~-~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTS-HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp TTCEEE-EETTTEEEEEEE-BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred CCCccc-CCCCCccEEEec-cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 111221 223334555443 22335688899876 45555665543333356789999998876421111 2
Q ss_pred cEEEEEeCCCCCCCCCCcceEEEEeccCCCCCCCCCceEEEEEECCCCceEEEEEE
Q psy1288 366 TIIFHCNIPARVDPNSKLETSIFREIKVPDFDPSLFETKQVFYPSKDGTKIPMFIL 421 (1012)
Q Consensus 366 ~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~v~~~s~DG~~i~~~l~ 421 (1012)
..|.++|+ ++++...+.+.-.+..++....-.+..+. .++||..|.+...
T Consensus 449 ~~v~v~d~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~g~~~~~s~~ 498 (543)
T 1nir_A 449 QSVAVFDL-----KNLDAKYQVLPIAEWADLGEGAKRVVQPE-YNKRGDEVWFSVW 498 (543)
T ss_dssp TCEEEEET-----TCTTSCCEEECHHHHHCCCSSCCEEEEEE-ECSSSSEEEEEEE
T ss_pred ceEEEEEC-----CCCCCCeEEeechhhcccCCCCCceEecc-CCCCCCEEEEEee
Confidence 37999998 35532112221111111111112233333 4788988765554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00037 Score=77.70 Aligned_cols=222 Identities=10% Similarity=-0.080 Sum_probs=106.7
Q ss_pred CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC-CCceEEEEEEECCCCceeceee-c--ce
Q psy1288 128 NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS-GSDWTSMHFKDVATGKEYPEVL-H--RL 203 (1012)
Q Consensus 128 ~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~-G~~~~~L~v~dl~tg~~~~~t~-~--~~ 203 (1012)
+.-.+|..+..+++.+.+... . ......++|||||++|+++...+ +.....+|.++.++|+...... . ..
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~-~-----~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA-E-----VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE-E-----CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCEEEEEEeCCCCCEEEeecc-c-----CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 345667777777776666442 1 11245679999999887766532 2234566777777677654322 1 11
Q ss_pred eeeeeEEeeCCCeEEEEecCCCCCcc--cCCC----CCceEEEEeeccc-------cceeeeeeecCCCEEEEEECCCCC
Q psy1288 204 KFVSIAWTHDHKGVFYSNQEPKSKSK--KHSK----KNRSSAYHLTVNV-------APITSQYITNEGPQFVFKTNKDAP 270 (1012)
Q Consensus 204 ~~~~~~WSpDG~~l~y~~~~~~~~g~--~~~~----~~~~l~~~~~~~~-------~~i~~~~~s~dg~~l~~~tn~~~~ 270 (1012)
....+++ ||+.|+........... .+.. .......+..... ..+....|+|||++||+.... ..
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~ 177 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-TD 177 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-TT
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-CC
Confidence 2233444 89887766532110000 0000 0000111000000 001224699999998886543 22
Q ss_pred CceEEEEeCCCC----c-ccCc---EEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCcee--eeec-C
Q psy1288 271 NYRLITIDFDNF----A-ESNW---KTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHL--YTFP-L 338 (1012)
Q Consensus 271 ~~~L~~~dl~~~----~-~~~~---~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~--~~l~-~ 338 (1012)
...++.++.... + .... ..+.... ......+.+ .+++.+++....+ ..+.+|++.+|+.. ..+. .
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~~~g~~~~~~~~~~~ 254 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIG--GTVIAFRYADGMLDEIQTVAAD 254 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTT--CEEEEEEEETTEEEEEEEEESC
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcCCCCEEEEEcCCC--CeEEEEEecCCceEEeEEEecC
Confidence 344554444332 1 0000 1111111 111222333 4545666654333 45778887666432 1221 1
Q ss_pred C--ceEEEeecccccCcEEEEEecC
Q psy1288 339 D--VGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 339 ~--~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+ ......+.++|||+.|+++...
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEECS
T ss_pred CCCCCCcccEEECCCCCEEEEECCC
Confidence 1 1224567899999988765543
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.32 E-value=4.3e-07 Score=107.58 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=87.9
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhH--HHHHH-hCCeEEEEEcCCCCCCCchhHHhh-h
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTK--IVFLR-DFNGIYAIPNIRGGGEYGERWHDG-G 484 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~--~~~l~-~~G~~v~~~d~RG~g~~g~~~~~~-~ 484 (1012)
+.|...+ .++.|.......+.|+||++|||...... ..+.... ...++ ..|++|+.+|||.+. +|...... .
T Consensus 102 sedcl~l--~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~gf~~~~~~~ 178 (544)
T 1thg_A 102 NEDCLYL--NVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAIT 178 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHH
T ss_pred CCCCeEE--EEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-ccCCCccccc
Confidence 4565544 56778765445678999999998543322 2233321 11122 247999999999754 21110000 0
Q ss_pred hcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--------CCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--------PDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~~ 545 (1012)
....+...+.|+.++++|+.++. ..||++|+|+|+|+||.+++.++... ..+|+++|+.+|
T Consensus 179 ~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg 250 (544)
T 1thg_A 179 AEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSG 250 (544)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESC
T ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecc
Confidence 11233445789999999998863 36999999999999999988777652 458999999988
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.2e-07 Score=101.74 Aligned_cols=44 Identities=18% Similarity=0.137 Sum_probs=40.1
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+|+||+||++|..+ .++.+++++|++.|+ ++++++++++||+|.
T Consensus 285 pP~Li~~G~~D~l~--~~~~~~~~~L~~~g~-------~v~l~~~~g~~H~f~ 328 (365)
T 3ebl_A 285 AKSLIIVSGLDLTC--DRQLAYADALREDGH-------HVKVVQCENATVGFY 328 (365)
T ss_dssp CCEEEEEETTSTTH--HHHHHHHHHHHHTTC-------CEEEEEETTCCTTGG
T ss_pred CCEEEEEcCcccch--hHHHHHHHHHHHCCC-------CEEEEEECCCcEEEe
Confidence 79999999999655 477999999999988 999999999999986
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.31 E-value=6.3e-07 Score=106.01 Aligned_cols=128 Identities=19% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC---CCcChhHHHHHHhCCeEEEEEcCCCCC-CCchhHHhhhh
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ---PGFSVTKIVFLRDFNGIYAIPNIRGGG-EYGERWHDGGR 485 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~~~~~~~~ 485 (1012)
+.|...+ -++.|... .++.|+||++|||...... ..+... .+..+.|++|+.+|||.+. ++.... ...
T Consensus 89 ~edcl~l--nv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~~--~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~ 160 (529)
T 1p0i_A 89 SEDCLYL--NVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDGK--FLARVERVIVVSMNYRVGALGFLALP--GNP 160 (529)
T ss_dssp CSCCCEE--EEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCTH--HHHHHHCCEEEEECCCCHHHHHCCCT--TCT
T ss_pred CCcCCeE--EEeeCCCC--CCCCeEEEEECCCccccCCCCccccChH--HHhccCCeEEEEecccccccccccCC--CCC
Confidence 4565554 45677653 2568999999998533222 223332 2333369999999999531 111000 001
Q ss_pred cCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
...+...+.|..++++|+.++. -.||++|.|+|+|+||.+++.++... ..+|+++|+.+|
T Consensus 161 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg 225 (529)
T 1p0i_A 161 EAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSG 225 (529)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESC
T ss_pred CCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcC
Confidence 1223345789999999998862 37999999999999999998887653 458999999988
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=100.94 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=44.3
Q ss_pred CCCCceEEEcccCCCCCCCcch-HHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHS-LKFAATLQEKLRDYPHQTNP-LLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~-~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~gH~~~ 868 (1012)
++++|+||+||++|..||..+. ++++++|++.|+ + ++++++|+.||++.
T Consensus 330 ~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~-------~~~~l~~~pgagH~~~ 380 (446)
T 3hlk_A 330 RAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGR-------RKPQIICYPETGHYIE 380 (446)
T ss_dssp GCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTC-------CCCEEEEETTBCSCCC
T ss_pred HCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCC-------CCcEEEEECCCCCeEC
Confidence 5559999999999999999655 799999999988 7 89999999999995
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.9e-08 Score=107.02 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=51.9
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+..++|+.++. ++++|+||+||++|..||+.++.+++++|+. +++++++|++||++.
T Consensus 259 ~~~~~~~~~~~~~~-------~i~~P~lii~G~~D~~~p~~~~~~~~~~l~~----------~~~~~~~~~~gH~~~ 318 (337)
T 1vlq_A 259 FRTLSYFDGVNFAA-------RAKIPALFSVGLMDNICPPSTVFAAYNYYAG----------PKEIRIYPYNNHEGG 318 (337)
T ss_dssp HHHHHTTCHHHHHT-------TCCSCEEEEEETTCSSSCHHHHHHHHHHCCS----------SEEEEEETTCCTTTT
T ss_pred HHhhhhccHHHHHH-------HcCCCEEEEeeCCCCCCCchhHHHHHHhcCC----------CcEEEEcCCCCCCCc
Confidence 44556778888888 8889999999999999999999999888763 679999999999974
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.7e-07 Score=105.20 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=76.2
Q ss_pred CcEEEEEcCCCCCCCCC---CcChhHHHHHHhCCeEEEEEcCCCCC-CCchhHHhhhhcCCCcchHhHHHHHHHHHHHcC
Q psy1288 432 NPCILYGYGGFAVSLQP---GFSVTKIVFLRDFNGIYAIPNIRGGG-EYGERWHDGGRLLNKQNVFDDFQCAAEYLIASG 507 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~ 507 (1012)
.|+||++|||....... .+.. ..++++|++|+.+|+|.+. ++... ......+...+.|+.++++|+.++.
T Consensus 115 ~Pviv~iHGGg~~~g~~~~~~~~~---~~l~~~g~vvv~~nYRl~~~Gf~~~---~~~~~~~n~gl~D~~~al~wv~~~i 188 (551)
T 2fj0_A 115 LPVLVFIHGGGFAFGSGDSDLHGP---EYLVSKDVIVITFNYRLNVYGFLSL---NSTSVPGNAGLRDMVTLLKWVQRNA 188 (551)
T ss_dssp EEEEEEECCSTTTSCCSCTTTCBC---TTGGGGSCEEEEECCCCHHHHHCCC---SSSSCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCccccCCCcccccCH---HHHHhCCeEEEEeCCcCCccccccC---cccCCCCchhHHHHHHHHHHHHHHH
Confidence 89999999985332222 2332 2344579999999999642 11100 0011123345789999999998873
Q ss_pred ---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 508 ---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 508 ---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
.+||++|.|+|+|+||.+++.++.. .+.+|+++|+.+|
T Consensus 189 ~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg 231 (551)
T 2fj0_A 189 HFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSG 231 (551)
T ss_dssp GGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESC
T ss_pred HHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecC
Confidence 2699999999999999999888765 3568999999988
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-07 Score=101.30 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=53.2
Q ss_pred HhHcCCCCCCCCCCCCCCCCC---CCceEEEcccCCC--------------CCCCcchHHHHHHHHHHh-cCCCCCCCCE
Q psy1288 794 YLLGYSPLHNIQGPNELKGKQ---YPATLLMTADHDD--------------RVSPVHSLKFAATLQEKL-RDYPHQTNPL 855 (1012)
Q Consensus 794 ~~~~~Sp~~~v~~~~~~~~~~---~~p~l~~~g~~D~--------------rv~~~~~~~~~~~l~~~~-~~~~~~~~~~ 855 (1012)
.+...+|+.+++ ++ .+|++|+||++|+ +|+..++.+|+++|+++| + ++
T Consensus 188 ~~~~~~p~~~~~-------~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~G~~-------~v 253 (304)
T 1sfr_A 188 AWQRNDPLLNVG-------KLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGH-------NG 253 (304)
T ss_dssp HHHHSCTTTTHH-------HHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-------SE
T ss_pred hhHhcCHHHHHH-------HhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHHHHHHHHHHhCCCC-------ce
Confidence 356778988776 54 5999999999999 789999999999999998 8 99
Q ss_pred EEEEeCCCCCCCC
Q psy1288 856 LIRIETKAGHGGG 868 (1012)
Q Consensus 856 ~~~~~~~~gH~~~ 868 (1012)
.|.+|++.+|++.
T Consensus 254 ~~~~~~~g~H~~~ 266 (304)
T 1sfr_A 254 VFDFPDSGTHSWE 266 (304)
T ss_dssp EEECCSCCCSSHH
T ss_pred EEEecCCCccCHH
Confidence 9999988899864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00017 Score=79.94 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=130.2
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|++++....+ +.-.|| +...++....+. ....+..+.|||||++|+......+.....|.++|+.
T Consensus 83 ~~~~~~l~s~~~d---g~i~iw--d~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 83 DCFTKYCVTGSAD---YSIKLW--DVSNGQCVATWK-------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp CTTSSEEEEEETT---TEEEEE--ETTTCCEEEEEE-------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred cCCCCEEEEEeCC---CeEEEE--ECCCCcEEEEee-------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 3677776654332 233444 554454443333 1235778999999999998876533333478888877
Q ss_pred CCceec------------eeecce--eeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecC
Q psy1288 192 TGKEYP------------EVLHRL--KFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNE 257 (1012)
Q Consensus 192 tg~~~~------------~t~~~~--~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~d 257 (1012)
++.... ...... ....++|+|||+.|+....++...- -+.................+....|+|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 229 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK-YDVSNNYEYVDSIDLHEKSISDMQFSPD 229 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEE-EETTTTTEEEEEEECCSSCEEEEEECTT
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEE-EECCCCcEeEEEEecCCCceeEEEECCC
Confidence 654211 000011 3577899999998877654321000 0000101111111111133444568999
Q ss_pred CCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcC-----------ceEEEEEEe
Q psy1288 258 GPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHH-----------VKNVMHLHD 326 (1012)
Q Consensus 258 g~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~l~~~d 326 (1012)
++.|+..+. +..|...|+.+.. ....+.. ...+.......+++.+++....+ +...+.+|+
T Consensus 230 ~~~l~~~~~----d~~i~v~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 230 LTYFITSSR----DTNSFLVDVSTLQ---VLKKYET-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp SSEEEEEET----TSEEEEEETTTCC---EEEEEEC-SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred CCEEEEecC----CceEEEEECCCCc---eeeeecC-CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 998887764 3467888887654 1222222 12222222223434555443332 122688899
Q ss_pred cCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 327 LASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 327 l~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.+++....+......+..+.|+|+++.|+..... ..|..+++
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~ 344 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED----GFIRLHHF 344 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEEE
T ss_pred cCCCcchhheecccCcEEEEEECCCCCEEEEEcCC----CeEEEEEC
Confidence 97777666665555667788999999876654332 35777777
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=7.7e-07 Score=105.28 Aligned_cols=128 Identities=20% Similarity=0.158 Sum_probs=86.3
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC---CCcChhHHHHHHhCCeEEEEEcCCCCC-CCchhHHhhhh
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ---PGFSVTKIVFLRDFNGIYAIPNIRGGG-EYGERWHDGGR 485 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~~~~~~~~ 485 (1012)
+.|...+ -++.|... .++.|+||++|||...... ..+... .+..+.|++|+.+|||.+. ++... ....
T Consensus 91 sedcl~l--nv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~~--~la~~~~~vvv~~nYRlg~~Gf~~~--~~~~ 162 (537)
T 1ea5_A 91 SEDCLYL--NIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGK--YLAYTEEVVLVSLSYRVGAFGFLAL--HGSQ 162 (537)
T ss_dssp CSCCCEE--EEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTH--HHHHHHTCEEEECCCCCHHHHHCCC--TTCS
T ss_pred CCcCCeE--EEeccCCC--CCCCeEEEEECCCcccCCCCCCCccChH--HHHhcCCEEEEEeccCccccccccC--CCCC
Confidence 5566555 45567653 3678999999998533322 223432 3343569999999999531 11000 0001
Q ss_pred cCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
...+...+.|..++++|+.++. -.||++|.|+|+|+||.+++.++.. ...+|+++|+.+|
T Consensus 163 ~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg 227 (537)
T 1ea5_A 163 EAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSG 227 (537)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESC
T ss_pred CCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccC
Confidence 1223345789999999998873 3699999999999999999887764 2458999999988
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00043 Score=75.89 Aligned_cols=191 Identities=10% Similarity=0.017 Sum_probs=103.7
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC--CCceecee-ec-ceeeeeeEEeeCCCeEEEEecCCCCCcccCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA--TGKEYPEV-LH-RLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSK 233 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~--tg~~~~~t-~~-~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~ 233 (1012)
.+..++|||||++|+++....+ .|.+++++ +|+..... .. ......++|+|||+.|++......
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-------- 106 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEF----RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAG-------- 106 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTT----EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTT--------
T ss_pred CCceEEECCCCCEEEEeecCCC----eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCC--------
Confidence 3567899999999887665433 56665655 77654321 11 123567899999998887764211
Q ss_pred CCceEEEEee-----------ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCC-CcccCcEEe----eccCCCc
Q psy1288 234 KNRSSAYHLT-----------VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDN-FAESNWKTL----IEENKDD 297 (1012)
Q Consensus 234 ~~~~l~~~~~-----------~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~-~~~~~~~~l----~~~~~~~ 297 (1012)
...++... .....+....|+|+|+.||+.... ...|..+++.+ +. ...+ .......
T Consensus 107 --~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 107 --NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK---QDRICLFTVSDDGH---LVAQDPAEVTTVEGA 178 (343)
T ss_dssp --EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG---GTEEEEEEECTTSC---EEEEEEEEEECSTTC
T ss_pred --eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC---CCEEEEEEecCCCc---eeeecccccccCCCC
Confidence 01111110 000122234599999999877632 24577777765 33 2211 1111121
Q ss_pred eeeeeEE-ecCCEEEEEEEcCceEEEEEEecC--CCce--eeeec-CCc-----eEEEeecccccCcEEEEEecCCCCCc
Q psy1288 298 VLDWATC-VANDKLILSYIHHVKNVMHLHDLA--SGKH--LYTFP-LDV-----GTIVGFSGKKKYSEIFYSFMSFLQPT 366 (1012)
Q Consensus 298 ~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~--~G~~--~~~l~-~~~-----~~v~~~~~spdg~~l~~~~ss~~~p~ 366 (1012)
....+.+ .+++.+++....+ ..+.+|++. +|+. ...+. .+. ..+..+.++||++.++++... ..
T Consensus 179 ~~~~~~~~pdg~~l~~~~~~~--~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~---~~ 253 (343)
T 1ri6_A 179 GPRHMVFHPNEQYAYCVNELN--SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT---AS 253 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTT--TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT---TT
T ss_pred CcceEEECCCCCEEEEEeCCC--CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC---CC
Confidence 2222333 3445566654333 467777873 3432 11221 121 234467899999988766532 24
Q ss_pred EEEEEeC
Q psy1288 367 IIFHCNI 373 (1012)
Q Consensus 367 ~l~~~d~ 373 (1012)
.+.++|+
T Consensus 254 ~i~v~d~ 260 (343)
T 1ri6_A 254 LITVFSV 260 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6777777
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=96.58 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 798 YSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 798 ~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.||+...- +..+|+||+||++|..+ .++.+++++|+..|+ +++++++|+.||++.
T Consensus 230 ~sp~~~~~-------~~~pP~li~~G~~D~~~--~~~~~~~~~l~~~g~-------~~~l~~~~g~~H~~~ 284 (322)
T 3k6k_A 230 ISPVYADL-------SGLPEMLIHVGSEEALL--SDSTTLAERAGAAGV-------SVELKIWPDMPHVFQ 284 (322)
T ss_dssp TCGGGSCC-------TTCCCEEEEEESSCTTH--HHHHHHHHHHHHTTC-------CEEEEEETTCCTTGG
T ss_pred CCcccccc-------cCCCcEEEEECCcCccH--HHHHHHHHHHHHCCC-------CEEEEEECCCccccc
Confidence 47776655 66689999999999874 599999999999988 999999999999985
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=90.23 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=44.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+.+|+|++||++|..||+.++.+++++|++.|+ ++++.+++ .||++..
T Consensus 147 ~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~-------~~~~~~~~-~gH~~~~ 195 (209)
T 3og9_A 147 LDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGC-------QLEIYESS-LGHQLTQ 195 (209)
T ss_dssp CTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTC-------EEEEEECS-STTSCCH
T ss_pred ccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCC-------ceEEEEcC-CCCcCCH
Confidence 4559999999999999999999999999999988 99999998 7999854
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.1e-08 Score=105.59 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=49.0
Q ss_pred HcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCC-cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSP-VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+|+..++ .-+..+|+||+||+.|..|+. .++.+++++|++.|+ ++++.++|+.+|++.
T Consensus 204 ~~~~~~~~~~-----~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 265 (283)
T 4b6g_A 204 QQYDANSLIQ-----QGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAANQ-------PVDVRFHKGYDHSYY 265 (283)
T ss_dssp GGGCHHHHHH-----HTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHHTC-------CCEEEEETTCCSSHH
T ss_pred HhcCHHHHHH-----hcccCCCEEEEecCCCccCcchhhHHHHHHHHHHcCC-------CceEEEeCCCCcCHh
Confidence 3456655554 112346999999999999997 559999999999999 999999999999873
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-07 Score=102.54 Aligned_cols=123 Identities=13% Similarity=0.001 Sum_probs=75.9
Q ss_pred CCCCCc--cCCccccccCccceeeeccccccccchh-hh-cccccCCCCCCCCCCCccc----CCCCCChhhhhHhHcCC
Q psy1288 728 ETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILI-AE-VLDMLKFNKFTIGYFWESD----YGSPANSSQFEYLLGYS 799 (1012)
Q Consensus 728 d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~S 799 (1012)
|+.++. |.|.| +++++.....+|+.|+ +. +.-=..+....... .... ++.+..+++......-+
T Consensus 9 D~~RI~v~G~S~G-------G~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (318)
T 2d81_A 9 NPNSVSVSGLASG-------GYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQY-YTSCMYNGYPSITTPTANMKSWSGN 80 (318)
T ss_dssp EEEEEEEEEETHH-------HHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSC-GGGGSTTCCCCCHHHHHHHHHHBTT
T ss_pred CcceEEEEEECHH-------HHHHHHHHHHCchhhhccceEEecccccccchHH-HHHHhhccCCCCCCHHHHHHHhhcc
Confidence 445555 88999 8888766666788886 31 11100011000000 0001 12121222222222226
Q ss_pred CCCCCCCCCCCCCCCC-CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 800 PLHNIQGPNELKGKQY-PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 800 p~~~v~~~~~~~~~~~-~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
|+..++ +++ +|+||+||++|.+||+.++++++++|++.|. ..+++|++++++||++...
T Consensus 81 ~i~~~~-------~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~-----~~~ve~~~~~g~gH~~~~~ 140 (318)
T 2d81_A 81 QIASVA-------NLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDN-----SANVSYVTTTGAVHTFPTD 140 (318)
T ss_dssp TBCCGG-------GGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSC-----GGGEEEEEETTCCSSEEES
T ss_pred cCChhH-------cCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCC-----CcceEEEEeCCCCCCCccC
Confidence 777666 543 6999999999999999999999999999872 1179999999999998644
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-06 Score=96.05 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=39.7
Q ss_pred CCCCceEEEcccCCCCCC-----------------CcchHHHHHHHH----HHhcCCCCCCCC--EEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVS-----------------PVHSLKFAATLQ----EKLRDYPHQTNP--LLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~-----------------~~~~~~~~~~l~----~~~~~~~~~~~~--~~~~~~~~~gH~~~ 868 (1012)
.+.+|+||+||++|..++ ..++.+++++|+ +.|+ + ++++++|+.||++.
T Consensus 203 ~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~-------~~~~~~~~~pg~gH~~~ 274 (304)
T 3d0k_A 203 LLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGL-------PFGWQLQVVPGIGHDGQ 274 (304)
T ss_dssp HHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHHHHHHHHHHHHHHHHTC-------CCCCEEEEETTCCSCHH
T ss_pred hhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHHHHHHHHHHHHHHhcCC-------CcceEEEEeCCCCCchH
Confidence 445999999999999862 235678889888 6766 7 99999999999984
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.21 E-value=0.001 Score=74.43 Aligned_cols=105 Identities=16% Similarity=0.056 Sum_probs=63.2
Q ss_pred CCCCeeeCCEEEEEEEcCCCC--eeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC-----CCC
Q psy1288 108 YSSPQRQGDHYFFFHNTGLQN--HSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS-----SGS 180 (1012)
Q Consensus 108 ~s~p~~dG~~~yy~~~~~~~~--~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~-----~G~ 180 (1012)
...|.++++++| +.+.+... ...+++.+...++....+.. + ..- .+.+||||+++..+... .|.
T Consensus 8 ~~~~~~~~~~~y-v~~~~~~~~~d~~v~v~D~~t~~~~~~i~~------g-~~p-~i~~spdg~~lyv~~~~~~~~~~g~ 78 (361)
T 2oiz_A 8 HSVSAPQENRIY-VMDSVFMHLTESRVHVYDYTNGKFLGMVPT------A-FNG-HVQVSNDGKKIYTMTTYHERITRGK 78 (361)
T ss_dssp CCCSSCGGGEEE-EEECCGGGGGGCEEEEEETTTCCEEEEEEC------C-EEE-EEEECTTSSEEEEEEEEETTSSSSC
T ss_pred cCcCCCCCCEEE-EECCCCCccccCeEEEEECCCCeEEEEecC------C-CCC-ceEECCCCCEEEEEEecccccccCC
Confidence 334556777654 44432111 23678888766654332321 2 223 78999999998766531 233
Q ss_pred ceEEEEEEECCCCceece-eec------ceeeeeeEEeeCCCeEEEEe
Q psy1288 181 DWTSMHFKDVATGKEYPE-VLH------RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 181 ~~~~L~v~dl~tg~~~~~-t~~------~~~~~~~~WSpDG~~l~y~~ 221 (1012)
....|.++|+++++.... ... ......+++||||++||...
T Consensus 79 ~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 79 RSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEE
T ss_pred CCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEEC
Confidence 345799999998886542 221 11235689999999887654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00035 Score=78.65 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=61.6
Q ss_pred CCeeeCCEEEEEEEc-CCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC-----CCCceE
Q psy1288 110 SPQRQGDHYFFFHNT-GLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS-----SGSDWT 183 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~-~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~-----~G~~~~ 183 (1012)
.|.+++++ .|+.+. +......+++.+...++...-+.. |. .- .+.+||||+++.++... .|....
T Consensus 27 ~~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~------g~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILGHVNG------GF-LP-NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEEEecC------CC-CC-CeEECCCCCEEEEEeccccccccCCCCC
Confidence 44577865 444443 211111677777765543322221 22 22 88999999999887542 122224
Q ss_pred EEEEEECCCCceece-eec-------ceeeeeeEEeeCCCeEEEEec
Q psy1288 184 SMHFKDVATGKEYPE-VLH-------RLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 184 ~L~v~dl~tg~~~~~-t~~-------~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
.|.++|+++.+.... ... ......+.|||||++||+...
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~ 144 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF 144 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEec
Confidence 788999998776532 111 111246899999999988753
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00034 Score=75.90 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=126.9
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
.++++.+||+-... ..|++.+..++..+.+..+ ..+..+.++|||+.++ .. . ..|+++|.+
T Consensus 21 ~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~--------~~~~~i~~~~dG~l~v-~~-~-----~~l~~~d~~ 81 (297)
T 3g4e_A 21 EEVSNSLLFVDIPA----KKVCRWDSFTKQVQRVTMD--------APVSSVALRQSGGYVA-TI-G-----TKFCALNWK 81 (297)
T ss_dssp ETTTTEEEEEETTT----TEEEEEETTTCCEEEEECS--------SCEEEEEEBTTSSEEE-EE-T-----TEEEEEETT
T ss_pred ECCCCEEEEEECCC----CEEEEEECCCCcEEEEeCC--------CceEEEEECCCCCEEE-EE-C-----CeEEEEECC
Confidence 45677888864332 4688888776655443221 2467889999999443 22 1 269999999
Q ss_pred CCceeceeec-----ceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc--------cceeeeeeecCC
Q psy1288 192 TGKEYPEVLH-----RLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV--------APITSQYITNEG 258 (1012)
Q Consensus 192 tg~~~~~t~~-----~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~--------~~i~~~~~s~dg 258 (1012)
+|+....... ......+.++|||+ |++..................++.....+. ....-..|+|||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTS
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCC
Confidence 9886543221 12346789999998 666543211000000000112222211100 111123589999
Q ss_pred CEEEEEECCCCCCceEEEEeCC--CCcccCcEEeeccC--CCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee
Q psy1288 259 PQFVFKTNKDAPNYRLITIDFD--NFAESNWKTLIEEN--KDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334 (1012)
Q Consensus 259 ~~l~~~tn~~~~~~~L~~~dl~--~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~ 334 (1012)
+.||+.... ...|++++++ ++.... .+++... .......+....++.|++....+ .+|.+++.++|+...
T Consensus 161 ~~lyv~~~~---~~~i~~~~~d~~~G~~~~-~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~--~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 161 KIFYYIDSL---SYSVDAFDYDLQTGQISN-RRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG--GRVIRLDPVTGKRLQ 234 (297)
T ss_dssp CEEEEEEGG---GTEEEEEEECTTTCCEEE-EEEEEECCGGGCEEEEEEEBTTSCEEEEEETT--TEEEEECTTTCCEEE
T ss_pred CEEEEecCC---CCcEEEEeccCCCCcccC-cEEEEECCCCCCCCCeeEECCCCCEEEEEcCC--CEEEEEcCCCceEEE
Confidence 999887643 3567777763 332111 1222111 11223344443335677765543 358899997788777
Q ss_pred eecCCceEEEeeccc-ccCcEEEEEecCC
Q psy1288 335 TFPLDVGTIVGFSGK-KKYSEIFYSFMSF 362 (1012)
Q Consensus 335 ~l~~~~~~v~~~~~s-pdg~~l~~~~ss~ 362 (1012)
.+..|...+..+.+. ||+++|+++....
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 777775556677777 8889999988654
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.4e-06 Score=100.80 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcCCCCCCCCC---CcChhHHHHHHhCCeEEEEEcCCCCC-CCch---hHHh-hhhcCCCcchHhHHHHHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQP---GFSVTKIVFLRDFNGIYAIPNIRGGG-EYGE---RWHD-GGRLLNKQNVFDDFQCAA 500 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g~---~~~~-~~~~~~~~~~~~D~~a~~ 500 (1012)
.++.|+||++|||....... .+... .+....|++|+.+|||-+. +|.. .... ......+...+.|+.+++
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~--~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al 215 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNAD--IMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAI 215 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCH--HHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCch--hhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHH
Confidence 45689999999985333222 23332 2334458999999999421 1110 0000 111222344578999999
Q ss_pred HHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 501 EYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 501 ~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
+|+.++. -.||++|.|+|+|+||.++..++... ..+|+++|+.+|
T Consensus 216 ~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg 265 (585)
T 1dx4_A 216 RWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSG 265 (585)
T ss_dssp HHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESC
T ss_pred HHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcc
Confidence 9999873 36999999999999999988877652 368999999988
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-07 Score=96.53 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=38.3
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+|++|+||+||++|.+||+.++.++|.+|... ...+.++|+ ||..
T Consensus 196 ~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~~---------~k~l~~~~G-~H~~ 240 (259)
T 4ao6_A 196 QVTCPVRYLLQWDDELVSLQSGLELFGKLGTK---------QKTLHVNPG-KHSA 240 (259)
T ss_dssp GCCSCEEEEEETTCSSSCHHHHHHHHHHCCCS---------SEEEEEESS-CTTC
T ss_pred cCCCCEEEEecCCCCCCCHHHHHHHHHHhCCC---------CeEEEEeCC-CCCC
Confidence 77799999999999999999999999998543 457888887 6654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00036 Score=76.67 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=109.2
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
.+..++|||||++|+.... + ..|.++|+++++.... .........++|+|||+.|+....+....-. +.. ..
T Consensus 124 ~~~~~~~spdg~~l~~g~~-d----g~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iw-d~~-~~ 196 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTH-V----GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF-DIA-TG 196 (321)
T ss_dssp CCCCEEECTTSSEEEEECT-T----SEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE-ETT-TT
T ss_pred cEEEEEECCCCCEEEEEcC-C----CcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEE-ECC-CC
Confidence 4557899999999986533 2 2789999998876432 2222335779999999988877654211000 000 01
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEE
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYI 315 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~ 315 (1012)
+.+.........+....|+|+|+.|+..+. +..+...|+.... ....+......+ ..+.+ +++..| ++..
T Consensus 197 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~---~~~~~~~h~~~v-~~~~~sp~~~~l-~s~s 267 (321)
T 3ow8_A 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHAN---LAGTLSGHASWV-LNVAFCPDDTHF-VSSS 267 (321)
T ss_dssp EEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCC---EEEEECCCSSCE-EEEEECTTSSEE-EEEE
T ss_pred cEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcc---eeEEEcCCCCce-EEEEECCCCCEE-EEEe
Confidence 111111111123444568999987766543 3446667776544 122222222223 33333 343444 4444
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++ .+.+|++.+++....+......+..+.|+|+++.|+-.... ..|.++|.
T Consensus 268 ~D~--~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d----~~i~vwd~ 319 (321)
T 3ow8_A 268 SDK--SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD----QEIHIYDC 319 (321)
T ss_dssp TTS--CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----CCEEEEEC
T ss_pred CCC--cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC----CeEEEEeC
Confidence 443 57888997777655555445567788999999876644322 23555554
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=89.71 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCchhhhhhh
Q psy1288 799 SPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQLCVR 878 (1012)
Q Consensus 799 Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~ 878 (1012)
+....+. ++.+|+||+||++|..||+.++.++|. .++++++++.||++....+......
T Consensus 128 ~~~~~~~-------~~~~P~LiihG~~D~~Vp~~~s~~l~~--------------~~~l~i~~g~~H~~~~~~~~~~~I~ 186 (202)
T 4fle_A 128 AMQIEKL-------ESPDLLWLLQQTGDEVLDYRQAVAYYT--------------PCRQTVESGGNHAFVGFDHYFSPIV 186 (202)
T ss_dssp TTCCSSC-------SCGGGEEEEEETTCSSSCHHHHHHHTT--------------TSEEEEESSCCTTCTTGGGGHHHHH
T ss_pred hhhhhhh-------ccCceEEEEEeCCCCCCCHHHHHHHhh--------------CCEEEEECCCCcCCCCHHHHHHHHH
Confidence 4455666 788999999999999999999988762 3478899999999876544333333
Q ss_pred hhccCCC
Q psy1288 879 YMMGGHF 885 (1012)
Q Consensus 879 ~~~~~~~ 885 (1012)
..+.+..
T Consensus 187 ~FL~~a~ 193 (202)
T 4fle_A 187 TFLGLAT 193 (202)
T ss_dssp HHHTCCC
T ss_pred HHHhhhh
Confidence 3444433
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.5e-07 Score=99.12 Aligned_cols=61 Identities=10% Similarity=-0.029 Sum_probs=53.0
Q ss_pred HhHcCCCCCCCCCCCCCCCCC---CCceEEEc----ccCCCC-------CCCcchHHHHHHHHHHh-cCCCCCCCCEEEE
Q psy1288 794 YLLGYSPLHNIQGPNELKGKQ---YPATLLMT----ADHDDR-------VSPVHSLKFAATLQEKL-RDYPHQTNPLLIR 858 (1012)
Q Consensus 794 ~~~~~Sp~~~v~~~~~~~~~~---~~p~l~~~----g~~D~r-------v~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 858 (1012)
.+.+.+|+.+++ ++ .+|++|.| |+.|++ |+..++.+|+++|+++| + +++|.
T Consensus 181 ~~~~~~p~~~~~-------~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~g~~-------~~~~~ 246 (280)
T 1r88_A 181 RWKWHDPWVHAS-------LLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGH-------NGHFD 246 (280)
T ss_dssp TTGGGCTTTTHH-------HHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCC-------SEEEE
T ss_pred hhHhcCHHHHHH-------hhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHCCCc-------ceEEE
Confidence 356779988877 54 58999999 999996 79999999999999998 8 99999
Q ss_pred EeCCCCCCCC
Q psy1288 859 IETKAGHGGG 868 (1012)
Q Consensus 859 ~~~~~gH~~~ 868 (1012)
++++.||++.
T Consensus 247 ~~~~g~H~~~ 256 (280)
T 1r88_A 247 FPASGDNGWG 256 (280)
T ss_dssp CCSSCCSSHH
T ss_pred ecCCCCcChh
Confidence 9989999874
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-06 Score=102.37 Aligned_cols=130 Identities=19% Similarity=0.164 Sum_probs=84.9
Q ss_pred ECCCCceEEEEEEEeCCCC-CCCCCcEEEEEcCCCCCCCCC---------CcChhHHHHHHhCCeEEEEEcCCCCC-CCc
Q psy1288 409 PSKDGTKIPMFILSRKGAQ-LDGNNPCILYGYGGFAVSLQP---------GFSVTKIVFLRDFNGIYAIPNIRGGG-EYG 477 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~-~~~~~P~vv~~hGg~~~~~~~---------~~~~~~~~~l~~~G~~v~~~d~RG~g-~~g 477 (1012)
.+.|...| -++.|.... ..++.|+||++|||....... .+.. ..+..+.|++|+.+|||.+. ++.
T Consensus 76 ~sedcl~l--nv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~--~~la~~~~vvvV~~nYRLg~~Gfl 151 (579)
T 2bce_A 76 GNEDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDG--EEIATRGNVIVVTFNYRVGPLGFL 151 (579)
T ss_dssp SCSCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCC--HHHHHHHTCEEEEECCCCHHHHHC
T ss_pred CCCCCCEE--EEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccCh--HHHhcCCCEEEEEeCCccccccCC
Confidence 35666555 456676542 346789999999985322211 1222 23334447999999999532 111
Q ss_pred hhHHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 478 ERWHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 478 ~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
.. ......+...+.|+.++++|+.++. -+||++|+|+|+|+||.++..++.. ...+|+++|+.+|
T Consensus 152 ~~---~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg 221 (579)
T 2bce_A 152 ST---GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSG 221 (579)
T ss_dssp CC---SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESC
T ss_pred cC---CCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcC
Confidence 10 0001112225789999999998863 3699999999999999999887764 3468999999887
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.16 E-value=8.7e-08 Score=103.26 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=48.4
Q ss_pred HcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCC-cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSP-VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+|...++ .-+..+|+||+||++|..||. .++.+++++|++.|+ +++++++|+++|++.
T Consensus 199 ~~~~~~~~~~-----~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 260 (278)
T 3e4d_A 199 RRYDACSLVE-----DGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKGTDI-------GLTLRMHDRYDHSYY 260 (278)
T ss_dssp GGGCHHHHHH-----TTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTTSSC-------EEEEEEETTCCSSHH
T ss_pred HhcChhhHhh-----cCCCCCcEEEEecCCCcccccchhHHHHHHHHHHcCC-------CceEEEeCCCCcCHH
Confidence 3456665555 112346999999999999995 338999999999988 999999999999863
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00035 Score=76.30 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=123.3
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|.+++....+ +.-.+| +...++...+.... .....+..+.|+|||++|+.... +| .|+++|++
T Consensus 106 ~~~~~~l~~~~~d---~~i~~~--d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-dg----~v~~~d~~ 171 (337)
T 1gxr_A 106 LPDGCTLIVGGEA---STLSIW--DLAAPTPRIKAELT----SSAPACYALAISPDSKVCFSCCS-DG----NIAVWDLH 171 (337)
T ss_dssp CTTSSEEEEEESS---SEEEEE--ECCCC--EEEEEEE----CSSSCEEEEEECTTSSEEEEEET-TS----CEEEEETT
T ss_pred cCCCCEEEEEcCC---CcEEEE--ECCCCCcceeeecc----cCCCceEEEEECCCCCEEEEEeC-CC----cEEEEeCC
Confidence 3677777665432 233444 44444322221110 02234778999999999886553 23 68999999
Q ss_pred CCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCC
Q psy1288 192 TGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAP 270 (1012)
Q Consensus 192 tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~ 270 (1012)
+++..... ........+.|+|||+.|+....++...-. +.... +...... ....+....|+|+|+.|++.+..
T Consensus 172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~--- 245 (337)
T 1gxr_A 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW-DLREG-RQLQQHD-FTSQIFSLGYCPTGEWLAVGMES--- 245 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE-ETTTT-EEEEEEE-CSSCEEEEEECTTSSEEEEEETT---
T ss_pred CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE-ECCCC-ceEeeec-CCCceEEEEECCCCCEEEEEcCC---
Confidence 88765422 223345789999999988776644210000 00000 1111100 01233344689999988887743
Q ss_pred CceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeeccc
Q psy1288 271 NYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGK 349 (1012)
Q Consensus 271 ~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~s 349 (1012)
..+...++...+ ...+..+ ... +..+.+. +++.+ +....+ ..+.+|++.+++...... ....+..+.++
T Consensus 246 -~~i~~~~~~~~~---~~~~~~~-~~~-v~~~~~~~~~~~l-~~~~~d--g~i~~~~~~~~~~~~~~~-~~~~v~~~~~s 315 (337)
T 1gxr_A 246 -SNVEVLHVNKPD---KYQLHLH-ESC-VLSLKFAYCGKWF-VSTGKD--NLLNAWRTPYGASIFQSK-ESSSVLSCDIS 315 (337)
T ss_dssp -SCEEEEETTSSC---EEEECCC-SSC-EEEEEECTTSSEE-EEEETT--SEEEEEETTTCCEEEEEE-CSSCEEEEEEC
T ss_pred -CcEEEEECCCCC---eEEEcCC-ccc-eeEEEECCCCCEE-EEecCC--CcEEEEECCCCeEEEEec-CCCcEEEEEEC
Confidence 457778887654 1222222 222 3333333 43444 444444 368888987776543332 23456678899
Q ss_pred ccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 350 KKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 350 pdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
|+++.++..... ..+..+|+
T Consensus 316 ~~~~~l~~~~~d----g~i~iw~~ 335 (337)
T 1gxr_A 316 VDDKYIVTGSGD----KKATVYEV 335 (337)
T ss_dssp TTSCEEEEEETT----SCEEEEEE
T ss_pred CCCCEEEEecCC----CeEEEEEE
Confidence 999877655433 23555543
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-07 Score=97.37 Aligned_cols=56 Identities=11% Similarity=-0.127 Sum_probs=46.3
Q ss_pred HcCCCCCCCCCCCCCCCCCC--CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQY--PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~--~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+|+..++ ++. +|+||+||++|..|+ ++.+++++|+..|+ +++++++++ ||++.
T Consensus 182 ~~~~~~~~~~-------~~~~~~p~li~~G~~D~~v~--~~~~~~~~l~~~g~-------~~~~~~~~g-~H~~~ 239 (263)
T 2uz0_A 182 SPYSLESLAK-------KSDKKTKLWAWCGEQDFLYE--ANNLAVKNLKKLGF-------DVTYSHSAG-THEWY 239 (263)
T ss_dssp STTSHHHHGG-------GCCSCSEEEEEEETTSTTHH--HHHHHHHHHHHTTC-------EEEEEEESC-CSSHH
T ss_pred ccCCHHHHHH-------hccCCCeEEEEeCCCchhhH--HHHHHHHHHHHCCC-------CeEEEECCC-CcCHH
Confidence 3456665565 443 799999999999885 68999999999988 999999999 99874
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0028 Score=70.80 Aligned_cols=207 Identities=9% Similarity=-0.047 Sum_probs=101.7
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC-CCceecee-ec-ceeeeeeEEeeCCCeE-EEEecCCC--------
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA-TGKEYPEV-LH-RLKFVSIAWTHDHKGV-FYSNQEPK-------- 225 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~-tg~~~~~t-~~-~~~~~~~~WSpDG~~l-~y~~~~~~-------- 225 (1012)
....++|||||++|+ +.+.+ .|.+++++ +|+..+.. .. ......++|+|||+.| +|+...+.
T Consensus 41 ~~~~~a~spdg~~l~-~~~~~-----~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 41 PISWMTFDHERKNIY-GAAMK-----KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp CCSEEEECTTSSEEE-EEEBT-----EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCcEEEECCCCCEEE-EEccc-----eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 356789999999875 44442 67888876 77754322 11 1123458999999974 45543100
Q ss_pred --CCcc-----cCC-CCCceEEEEee-ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCC-CCcccCcEEeeccCC
Q psy1288 226 --SKSK-----KHS-KKNRSSAYHLT-VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFD-NFAESNWKTLIEENK 295 (1012)
Q Consensus 226 --~~g~-----~~~-~~~~~l~~~~~-~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~-~~~~~~~~~l~~~~~ 295 (1012)
..+. .+. +.....+.... .....+....|+|||+.||+.. .+ ...|+.++++ +++......+-....
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~-~~--~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD-LT--ANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TT--TTEEEEEEECTTSCEEEEEEEECSST
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc-CC--CCEEEEEEECCCCCEEEeeeEecCCC
Confidence 0011 000 00000000000 0011222346999999887653 32 2467777776 443111111110010
Q ss_pred CceeeeeE-EecCCEEEEEEEcCceEEEEEEecCCCcee---eee-cCCc---e---------EEEeec-ccccCcEEEE
Q psy1288 296 DDVLDWAT-CVANDKLILSYIHHVKNVMHLHDLASGKHL---YTF-PLDV---G---------TIVGFS-GKKKYSEIFY 357 (1012)
Q Consensus 296 ~~~~~~~~-~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~---~~l-~~~~---~---------~v~~~~-~spdg~~l~~ 357 (1012)
......+. ..+++.+++....++.-.++.++..+|+.. ..+ ..+. + ....+. ++|||+.|++
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 11122233 345557766544444444555555456532 122 1221 1 466788 9999998875
Q ss_pred EecCCC--CCcEEEEEeC
Q psy1288 358 SFMSFL--QPTIIFHCNI 373 (1012)
Q Consensus 358 ~~ss~~--~p~~l~~~d~ 373 (1012)
+..... .+..|.++++
T Consensus 272 ~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKL 289 (365)
T ss_dssp EEEESSTTSCCEEEEEEE
T ss_pred ECCCCCCCCCCeEEEEEE
Confidence 543221 2447777777
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=98.12 E-value=7.1e-07 Score=101.30 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=42.6
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCC---CCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKA---GHGGG 868 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---gH~~~ 868 (1012)
+|+||+||++|..||+.++.+++++|++.|+ +++++++|+. +||+.
T Consensus 309 ~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~-------~~~~~~~~~~~h~~h~~~ 357 (380)
T 3doh_A 309 IPIWVFHAEDDPVVPVENSRVLVKKLAEIGG-------KVRYTEYEKGFMEKHGWD 357 (380)
T ss_dssp SCEEEEEETTCSSSCTHHHHHHHHHHHHTTC-------CEEEEEECTTHHHHTTCC
T ss_pred CCEEEEecCCCCccCHHHHHHHHHHHHHCCC-------ceEEEEecCCcccCCCCC
Confidence 8999999999999999999999999999988 9999999999 55554
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-06 Score=94.04 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=40.1
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+|+||+||++|..|| ++.+++++|+++|+ +++++++|+.||++.
T Consensus 201 pp~li~~G~~D~~v~--~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 244 (268)
T 1jjf_A 201 KLLFIACGTNDSLIG--FGQRVHEYCVANNI-------NHVYWLIQGGGHDFN 244 (268)
T ss_dssp SEEEEEEETTCTTHH--HHHHHHHHHHHTTC-------CCEEEEETTCCSSHH
T ss_pred ceEEEEecCCCCCcc--HHHHHHHHHHHCCC-------ceEEEEcCCCCcCHh
Confidence 459999999999998 48899999999988 999999999999974
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.4e-06 Score=96.11 Aligned_cols=111 Identities=13% Similarity=-0.023 Sum_probs=75.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHh-CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRD-FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
...|.||++||..+.. ...|.......+.+ .|+.|+++|.||.+..... .... .......|+.+.++++.+...
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~~--~~~~--~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQYS--QASQ--NIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCHH--HHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccch--hhHh--hHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999975433 12344423333443 5999999999987653311 1100 011223577777888875533
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.+++.++|||+||.+++.++.++|++++.++...|
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~p 179 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDP 179 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecc
Confidence 4678999999999999999999988988888887766
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0013 Score=72.05 Aligned_cols=197 Identities=12% Similarity=0.050 Sum_probs=113.0
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
...+..+.|||+++.++-. +.+| .|+++|+++++.... .........++|+|||+.|+....+....-. +...
T Consensus 80 ~~~v~~~~~~~~~~~l~s~-s~D~----~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~-~~~~ 153 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASS-SLDA----HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF-GVES 153 (321)
T ss_dssp SSCEEEEEECSSSSEEEEE-ETTS----EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEE-ETTT
T ss_pred CCCEEEEEECCCCCEEEEE-eCCC----cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEE-EcCC
Confidence 3467789999999987643 3333 899999999876542 2222334678999999988876543210000 0000
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 314 (1012)
.... +........+....|+|+|+.|+..+.. ..+...|+.+++. ...+ ..... .+..+.+..++.+++..
T Consensus 154 ~~~~-~~~~~~~~~v~~~~~spdg~~lasg~~d----g~i~iwd~~~~~~--~~~~-~~h~~-~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 154 GKKE-YSLDTRGKFILSIAYSPDGKYLASGAID----GIINIFDIATGKL--LHTL-EGHAM-PIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp CSEE-EEEECSSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEE--EEEE-CCCSS-CCCEEEECTTSCEEEEE
T ss_pred Ccee-EEecCCCceEEEEEECCCCCEEEEEcCC----CeEEEEECCCCcE--EEEE-cccCC-ceeEEEEcCCCCEEEEE
Confidence 0011 1110111223344689999988877643 4577778776541 1222 22212 22333333324444444
Q ss_pred EcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..++ .+.+|++.+++....+......+..+.|+|+++.|+..... ..+..+|+
T Consensus 225 s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D----~~v~iwd~ 277 (321)
T 3ow8_A 225 SDDG--YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD----KSVKVWDV 277 (321)
T ss_dssp CTTS--CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred cCCC--eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCC----CcEEEEeC
Confidence 4443 57788987776655555445567788999999876644332 35888888
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00027 Score=88.12 Aligned_cols=232 Identities=8% Similarity=-0.038 Sum_probs=130.9
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|+|.+++....+ +.-.|| +...+.....+.. ....+..+.|||||++|+.... +| .|+++|+
T Consensus 21 ~sp~~~~la~~~~~---g~v~iw--d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~-dg----~i~vw~~ 84 (814)
T 3mkq_A 21 FHPTEPWVLTTLYS---GRVEIW--NYETQVEVRSIQV------TETPVRAGKFIARKNWIIVGSD-DF----RIRVFNY 84 (814)
T ss_dssp ECSSSSEEEEEETT---SEEEEE--ETTTTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEET-TS----EEEEEET
T ss_pred ECCCCCEEEEEeCC---CEEEEE--ECCCCceEEEEec------CCCcEEEEEEeCCCCEEEEEeC-CC----eEEEEEC
Confidence 34889988876532 234445 4444433322221 2345789999999999998755 22 7999999
Q ss_pred CCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeec-CCCEEEEEECCC
Q psy1288 191 ATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITN-EGPQFVFKTNKD 268 (1012)
Q Consensus 191 ~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~-dg~~l~~~tn~~ 268 (1012)
.+++.... .........++|+|||+.|+....++...-. +.................+....|+| +++.|+..+.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-- 161 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL-- 161 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE-EGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET--
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE-ECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC--
Confidence 99886542 2233346789999999988876644210000 00000011000000112344456888 6666666553
Q ss_pred CCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe---cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEe
Q psy1288 269 APNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV---ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVG 345 (1012)
Q Consensus 269 ~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~ 345 (1012)
+..|...++..+.. ...+...... .+....+. ++..++ ....+ ..+.+|++.+++....+......+..
T Consensus 162 --dg~v~vwd~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~~~~l~-~~~~d--g~i~~~d~~~~~~~~~~~~~~~~v~~ 233 (814)
T 3mkq_A 162 --DRTVKVWSLGQSTP--NFTLTTGQER-GVNYVDYYPLPDKPYMI-TASDD--LTIKIWDYQTKSCVATLEGHMSNVSF 233 (814)
T ss_dssp --TSEEEEEETTCSSC--SEEEECCCTT-CCCEEEECCSTTCCEEE-EECTT--SEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred --CCeEEEEECCCCcc--eeEEecCCCC-CEEEEEEEECCCCCEEE-EEeCC--CEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 34677788765542 2223222212 22222222 434444 43343 36888998777765666555556778
Q ss_pred ecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 346 FSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 346 ~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.|+|+++.++..... ..+..+|+
T Consensus 234 ~~~~~~~~~l~~~~~d----g~v~vwd~ 257 (814)
T 3mkq_A 234 AVFHPTLPIIISGSED----GTLKIWNS 257 (814)
T ss_dssp EEECSSSSEEEEEETT----SCEEEEET
T ss_pred EEEcCCCCEEEEEeCC----CeEEEEEC
Confidence 8899999876655432 35888888
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0012 Score=71.97 Aligned_cols=229 Identities=9% Similarity=-0.001 Sum_probs=126.0
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCC--ceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDG--EARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g--~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
+|+|.+++... ++.-.||-...... ....+.. ......+..+.|||||++|+..... | .|+++|
T Consensus 60 ~~~~~~l~~~~----dg~i~iw~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~~~d 125 (337)
T 1gxr_A 60 SNPTRHVYTGG----KGCVKVWDISHPGNKSPVSQLDC-----LNRDNYIRSCKLLPDGCTLIVGGEA-S----TLSIWD 125 (337)
T ss_dssp CSSSSEEEEEC----BSEEEEEETTSTTCCSCSEEEEC-----SCTTSBEEEEEECTTSSEEEEEESS-S----EEEEEE
T ss_pred ecCCcEEEEcC----CCeEEEEECCCCCceeeeecccc-----cCCCCcEEEEEEcCCCCEEEEEcCC-C----cEEEEE
Confidence 47888777653 23455664432211 1111110 0123467889999999999876432 2 799999
Q ss_pred CCCCceec---eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEEC
Q psy1288 190 VATGKEYP---EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 190 l~tg~~~~---~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn 266 (1012)
+++++... ..........+.|+||++.|+....+....-. +.. ..+...........+....|+|+++.|+..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~-d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW-DLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE-ETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEE-eCC-CCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 99887322 12222335788999999988776644211000 000 01111111111123444568999998887764
Q ss_pred CCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEe
Q psy1288 267 KDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVG 345 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~ 345 (1012)
+..+...|+.+++. ...+.. ... +..+.+ .+++.+++. ..+ ..+.+|++.+++. ..+......+..
T Consensus 204 ----dg~i~~~d~~~~~~---~~~~~~-~~~-v~~~~~s~~~~~l~~~-~~~--~~i~~~~~~~~~~-~~~~~~~~~v~~ 270 (337)
T 1gxr_A 204 ----DNTVRSWDLREGRQ---LQQHDF-TSQ-IFSLGYCPTGEWLAVG-MES--SNVEVLHVNKPDK-YQLHLHESCVLS 270 (337)
T ss_dssp ----TSEEEEEETTTTEE---EEEEEC-SSC-EEEEEECTTSSEEEEE-ETT--SCEEEEETTSSCE-EEECCCSSCEEE
T ss_pred ----CCcEEEEECCCCce---EeeecC-CCc-eEEEEECCCCCEEEEE-cCC--CcEEEEECCCCCe-EEEcCCccceeE
Confidence 35688888876541 122222 122 233333 343455544 333 3578889866554 334333455778
Q ss_pred ecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 346 FSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 346 ~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.++|+++.++.... -..+..+|+
T Consensus 271 ~~~~~~~~~l~~~~~----dg~i~~~~~ 294 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGK----DNLLNAWRT 294 (337)
T ss_dssp EEECTTSSEEEEEET----TSEEEEEET
T ss_pred EEECCCCCEEEEecC----CCcEEEEEC
Confidence 889999987765543 246888998
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00064 Score=80.65 Aligned_cols=248 Identities=11% Similarity=0.099 Sum_probs=130.0
Q ss_pred eCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCC-----ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 114 QGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDG-----TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 114 dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g-----~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
||+++|-.-... ..|.+.+....+....+.......++ .-.+..+.+||||+.+.++....| .|+++
T Consensus 236 dg~~l~v~~~~~----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g----~i~vv 307 (543)
T 1nir_A 236 EDRYTIAGAYWP----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG----KVLLV 307 (543)
T ss_dssp TTTEEEEEEEES----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT----EEEEE
T ss_pred CCCEEEEEEccC----CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC----eEEEE
Confidence 788766544322 23444465555444333321100000 114678899999999887765544 89999
Q ss_pred ECCCCceec-eeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecccccee---eeeeecCCCEEEE
Q psy1288 189 DVATGKEYP-EVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPIT---SQYITNEGPQFVF 263 (1012)
Q Consensus 189 dl~tg~~~~-~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~---~~~~s~dg~~l~~ 263 (1012)
|+++++.+. .++.. .....+.|+|||++|+............+.. ..++.........+.. ...++|+++.+|+
T Consensus 308 d~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~-tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~ 386 (543)
T 1nir_A 308 NYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 386 (543)
T ss_dssp ECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEEEEECSSSBCCTTCEEEEETTTEEEEE
T ss_pred EecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC-CCeEEEeeccCCCCCCCCCcccCCCCCccEEE
Confidence 998876433 12221 1235689999999876654321100000111 1122211111111110 1124678788877
Q ss_pred EECCCCCCceEEEEeCCCCc--ccCcE---EeeccCCCceeeeeEEecCCEEEEEEEcC----ceEEEEEEecCCCcee-
Q psy1288 264 KTNKDAPNYRLITIDFDNFA--ESNWK---TLIEENKDDVLDWATCVANDKLILSYIHH----VKNVMHLHDLASGKHL- 333 (1012)
Q Consensus 264 ~tn~~~~~~~L~~~dl~~~~--~~~~~---~l~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~l~~~dl~~G~~~- 333 (1012)
..+.+. ..|..++.++.. ...|+ ++-.+. ...+.....++++.|++...-+ ....|.+||+++++..
T Consensus 387 s~~~~d--~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~ 463 (543)
T 1nir_A 387 TSHLGD--GSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 463 (543)
T ss_dssp EEBSSS--SEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCC
T ss_pred eccCCC--ceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCe
Confidence 665332 346666665411 11133 222222 1111222234556777654211 1347899999877654
Q ss_pred eeec--------CCceEEEeecccccCcEEEEEecCC-CCCcEEEEEeC
Q psy1288 334 YTFP--------LDVGTIVGFSGKKKYSEIFYSFMSF-LQPTIIFHCNI 373 (1012)
Q Consensus 334 ~~l~--------~~~~~v~~~~~spdg~~l~~~~ss~-~~p~~l~~~d~ 373 (1012)
+.++ .+...+..+.+++||+.++++.-+. .....|.++|.
T Consensus 464 ~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 464 QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 4432 2234566789999999999986432 34678999998
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0014 Score=72.14 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=131.8
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
+.++++.+||+-..+ ..|++.+..++..+.+..+ ..+..+.|+|||+.++.+ .. .|+++|+
T Consensus 56 ~~~~~~~l~~~d~~~----~~i~~~d~~~~~~~~~~~~--------~~v~~i~~~~dg~l~v~~--~~-----gl~~~d~ 116 (326)
T 2ghs_A 56 FDPASGTAWWFNILE----RELHELHLASGRKTVHALP--------FMGSALAKISDSKQLIAS--DD-----GLFLRDT 116 (326)
T ss_dssp EETTTTEEEEEEGGG----TEEEEEETTTTEEEEEECS--------SCEEEEEEEETTEEEEEE--TT-----EEEEEET
T ss_pred EeCCCCEEEEEECCC----CEEEEEECCCCcEEEEECC--------CcceEEEEeCCCeEEEEE--CC-----CEEEEEC
Confidence 346778888875432 4688888776655544321 136678899999877643 21 4999999
Q ss_pred CCCceeceeec-----ceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec-------cccceeeeeeecCC
Q psy1288 191 ATGKEYPEVLH-----RLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV-------NVAPITSQYITNEG 258 (1012)
Q Consensus 191 ~tg~~~~~t~~-----~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~-------~~~~i~~~~~s~dg 258 (1012)
++|+....... ......+.|+|||+ |++....... + .....++..... +........|++||
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~----~-~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKA----E-TGAGSIYHVAKGKVTKLFADISIPNSICFSPDG 190 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTC----C-TTCEEEEEEETTEEEEEEEEESSEEEEEECTTS
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcC----C-CCceEEEEEeCCcEEEeeCCCcccCCeEEcCCC
Confidence 99886543211 12346789999997 5555432100 0 001122211100 00111133589999
Q ss_pred CEEEEEECCCCCCceEEEEeCC--CC-cccCcEEeecc-CCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee
Q psy1288 259 PQFVFKTNKDAPNYRLITIDFD--NF-AESNWKTLIEE-NKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334 (1012)
Q Consensus 259 ~~l~~~tn~~~~~~~L~~~dl~--~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~ 334 (1012)
+.||+.... ...|++++++ ++ ....-+.+... ........+....++.+++....+ ..|++++. +|+...
T Consensus 191 ~~lyv~~~~---~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~--~~v~~~d~-~g~~~~ 264 (326)
T 2ghs_A 191 TTGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE--GAVDRYDT-DGNHIA 264 (326)
T ss_dssp CEEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--TEEEEECT-TCCEEE
T ss_pred CEEEEEECC---CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC--CEEEEECC-CCCEEE
Confidence 999997543 3578888875 33 21111122111 111223334443335666655433 36888998 676666
Q ss_pred eecCCceEEEeeccc-ccCcEEEEEecCCCC--------C--cEEEEEeC
Q psy1288 335 TFPLDVGTIVGFSGK-KKYSEIFYSFMSFLQ--------P--TIIFHCNI 373 (1012)
Q Consensus 335 ~l~~~~~~v~~~~~s-pdg~~l~~~~ss~~~--------p--~~l~~~d~ 373 (1012)
.+..+...+..+.++ +|++.|+++.+.... | ..||++++
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p~~g~~~~~~~ 314 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGI 314 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred EEECCCCCcEEEEEecCCCCEEEEEecCCCCChhHhccCCCCceEEEEeC
Confidence 666665456677777 888888887755422 2 45777765
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-06 Score=98.78 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=51.6
Q ss_pred HhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 794 YLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 794 ~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.+...++...+. +++.|+||+||++|..||+.++.+++++|+..+. ++++++++++.|+..
T Consensus 319 ~~~~~~~~~~l~-------~i~~PvLii~G~~D~~v~~~~~~~l~~~l~~~~~-------~~~l~~~~~~~h~gh 379 (405)
T 3fnb_A 319 EVLEQAQIVDYN-------KIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGI-------DVTLRKFSSESGADA 379 (405)
T ss_dssp HHHHHCCCCCGG-------GCCSCEEEEEETTSCHHHHHHHHHHHHHHHHTTC-------CEEEEEECTTTTCCS
T ss_pred HHHHhhcccCHh-------hCCCCEEEEecCCCcCCChHHHHHHHHHhccCCC-------CceEEEEcCCccchh
Confidence 344556655566 7889999999999999999999999999999877 999999988888743
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-05 Score=88.98 Aligned_cols=120 Identities=20% Similarity=0.137 Sum_probs=84.3
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhC---------CeEEEEEcCCCCCCCchhH
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDF---------NGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~---------G~~v~~~d~RG~g~~g~~~ 480 (1012)
..||.+|.+....+.. +..|.||++||.++... .|.. ....|.+. ||.|+++|.||.|.....
T Consensus 74 ~i~g~~i~~~~~~~~~----~~~~plll~HG~~~s~~--~~~~-~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~~- 145 (388)
T 4i19_A 74 EIDGATIHFLHVRSPE----PDATPMVITHGWPGTPV--EFLD-IIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGPL- 145 (388)
T ss_dssp EETTEEEEEEEECCSS----TTCEEEEEECCTTCCGG--GGHH-HHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCCC-
T ss_pred EECCeEEEEEEccCCC----CCCCeEEEECCCCCCHH--HHHH-HHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCCC-
Confidence 4489999877665443 34578999999876443 3433 34556644 999999999997643211
Q ss_pred HhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 481 HDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 481 ~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
......+.++...+..+++. ...+++.++|+|+||.++..++.++|+.+.+++...+
T Consensus 146 ------~~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~ 202 (388)
T 4i19_A 146 ------KSAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLL 202 (388)
T ss_dssp ------SSCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSC
T ss_pred ------CCCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecC
Confidence 11122455666666666554 2346899999999999999999999999999998876
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0011 Score=76.60 Aligned_cols=238 Identities=8% Similarity=-0.015 Sum_probs=126.9
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|+|.+++.+-... +.-.||-....++.....+.... ....+..+.|||||++|+.... .| .|+++++
T Consensus 110 ~s~d~~~l~~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~-~g----~v~~~~~ 178 (450)
T 2vdu_B 110 LTSDESRLIACADSD--KSLLVFDVDKTSKNVLKLRKRFC----FSKRPNAISIAEDDTTVIIADK-FG----DVYSIDI 178 (450)
T ss_dssp ECTTSSEEEEEEGGG--TEEEEEEECSSSSSCEEEEEEEE----CSSCEEEEEECTTSSEEEEEET-TS----EEEEEET
T ss_pred EcCCCCEEEEEECCC--CeEEEEECcCCCCceeeeeeccc----CCCCceEEEEcCCCCEEEEEeC-CC----cEEEEec
Confidence 357888876655332 45677766532333333332100 1235778999999999987643 33 7899999
Q ss_pred CCCceec-----eeecceeeeeeEEeeC---CCeEEEEecCCCCCcc-cCCCCCceEEEEeeccccceeeeeeecCCCEE
Q psy1288 191 ATGKEYP-----EVLHRLKFVSIAWTHD---HKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVNVAPITSQYITNEGPQF 261 (1012)
Q Consensus 191 ~tg~~~~-----~t~~~~~~~~~~WSpD---G~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l 261 (1012)
.+++... ..........++|+|| |+.|+....+....-. .........+. ......+....|+ +|+.|
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL--FGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC--CCCSSCEEEEEEC-STTEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee--cCCCCceEEEEEC-CCCEE
Confidence 8876542 2222234578999999 8777666543210000 00000000000 0001233444688 88888
Q ss_pred EEEECCCCCCceEEEEeCCCCcccCcEEeecc-----------------------CCCceeeeeEE-ecCCEEEEEEEcC
Q psy1288 262 VFKTNKDAPNYRLITIDFDNFAESNWKTLIEE-----------------------NKDDVLDWATC-VANDKLILSYIHH 317 (1012)
Q Consensus 262 ~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~-----------------------~~~~~~~~~~~-~~~~~l~~~~~~~ 317 (1012)
+..+. ...|...|+.+++. ...+... .....+..+.+ .+++.+++....+
T Consensus 256 ~s~~~----d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d 329 (450)
T 2vdu_B 256 LSAGG----DDKIFAWDWKTGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT 329 (450)
T ss_dssp EEEES----SSEEEEEETTTCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC
T ss_pred EEEeC----CCeEEEEECCCCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC
Confidence 76663 34677788776541 1111100 00112223333 3445555554344
Q ss_pred ceEEEEEEec--CCC---ceeeeecCCceEEEeecccccCcEEEEEecCCCCCc------EEEEEeC
Q psy1288 318 VKNVMHLHDL--ASG---KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPT------IIFHCNI 373 (1012)
Q Consensus 318 g~~~l~~~dl--~~G---~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~------~l~~~d~ 373 (1012)
..|.+|++ .++ +....+..+ +.+..+.|+|+ .++++..+...|. ++|.++.
T Consensus 330 --~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~--~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 330 --KCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND--EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp --SEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT--EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred --CeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC--cEEEEEecccCCCCCCcceEEEEEEc
Confidence 45677777 444 333344444 55667888883 5677766665554 8888887
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-06 Score=94.07 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=56.1
Q ss_pred cCCCCCChhhhhHhHcCCCCCCCCCCCCCCCCC---CCceEEEcccCCC--------------CCCCcchHHHHHHHHHH
Q psy1288 782 DYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQ---YPATLLMTADHDD--------------RVSPVHSLKFAATLQEK 844 (1012)
Q Consensus 782 ~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~---~~p~l~~~g~~D~--------------rv~~~~~~~~~~~l~~~ 844 (1012)
.||++.. +.+.+.+|+.+++ ++ .+|++|.||++|+ .++..++.+|+++|+++
T Consensus 175 ~~g~~~~----~~~~~~~p~~~~~-------~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~ 243 (280)
T 1dqz_A 175 MWGPSSD----PAWKRNDPMVQIP-------RLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAAD 243 (280)
T ss_dssp HHCSTTS----HHHHHTCTTTTHH-------HHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCc----hhhhhcCHHHHHH-------HHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHHhC
Confidence 4565542 2356779998776 44 5899999999998 57889999999999999
Q ss_pred h-cCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 845 L-RDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 845 ~-~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
| + ++.|.++++.+|++.
T Consensus 244 g~~-------~~~~~~~~~g~H~~~ 261 (280)
T 1dqz_A 244 GGR-------NGVFNFPPNGTHSWP 261 (280)
T ss_dssp TCC-------SEEEECCSCCCSSHH
T ss_pred CCC-------ceEEEecCCCccChH
Confidence 8 8 999999999999863
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.1e-05 Score=83.15 Aligned_cols=108 Identities=12% Similarity=0.006 Sum_probs=64.4
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCe--EEEEEcCCCCCCC--chhHHh-h-------hhcCCCc----chHhHH
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNG--IYAIPNIRGGGEY--GERWHD-G-------GRLLNKQ----NVFDDF 496 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~d~RG~g~~--g~~~~~-~-------~~~~~~~----~~~~D~ 496 (1012)
+.||++||..+... .|.. ....|.+.|+ .|+.+|.++.|.. ...+.. . +...... ...+++
T Consensus 7 ~pvvliHG~~~~~~--~~~~-l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 7 TATLFLHGYGGSER--SETF-MVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp EEEEEECCTTCCGG--GTHH-HHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CcEEEECCCCCChh--HHHH-HHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 45777999654332 3443 3556776785 5777777765531 111100 0 0000001 123456
Q ss_pred HHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC-----ceeEEEEccC
Q psy1288 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD-----LFGAAIVQVG 545 (1012)
Q Consensus 497 ~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~~ 545 (1012)
..+++.+.+.- ..+++.++||||||.+++..+.++|+ .++..|...+
T Consensus 84 ~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~ 135 (249)
T 3fle_A 84 KEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAG 135 (249)
T ss_dssp HHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESC
T ss_pred HHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCC
Confidence 66677776652 34689999999999999998887763 5777777665
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00034 Score=84.38 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=123.2
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|||+++++.. + + .+.+.+..++.....+. ++...+...+|||||++||-... +| .|.++|++
T Consensus 27 spdg~~l~~~~--~--~--~v~l~~~~~~~~~~~~~------~h~~~v~~~~~spdg~~lasg~~-d~----~v~lWd~~ 89 (611)
T 1nr0_A 27 TPAGDKIQYCN--G--T--SVYTVPVGSLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDV-HG----NVRIWDTT 89 (611)
T ss_dssp CTTSSEEEEEE--T--T--EEEEEETTCSSCCEEEC------CCSSCEEEEEECTTSSEEEEEET-TS----EEEEEESS
T ss_pred CCCCCEEEeCC--C--C--EEEEecCCCcccCeEec------CCCCceEEEEECCCCcEEEEEeC-CC----CEEEeECC
Confidence 58999999864 2 2 34444444333332222 13345888999999999986543 22 79999997
Q ss_pred CCcee-c--eeecceeeeeeEEeeCCCeEEEEecCCCCCcc---cCCCCC-ceEEEEeeccccceeeeeeecCCCEEEEE
Q psy1288 192 TGKEY-P--EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK---KHSKKN-RSSAYHLTVNVAPITSQYITNEGPQFVFK 264 (1012)
Q Consensus 192 tg~~~-~--~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~---~~~~~~-~~l~~~~~~~~~~i~~~~~s~dg~~l~~~ 264 (1012)
+++.. . ..........++|+|||+.|+.........+. -+.+.. ..+ ......+....|+|++..+++.
T Consensus 90 ~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l----~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 90 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL----TGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC----CCCSSCEEEEEECSSSSCEEEE
T ss_pred CCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCccee----cCCCCCceEEEECCCCCeEEEE
Confidence 65432 1 12223346789999999998877643211000 000000 000 0000233344589998754444
Q ss_pred ECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeec-------
Q psy1288 265 TNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFP------- 337 (1012)
Q Consensus 265 tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~------- 337 (1012)
...+ ..+...+....+ ....+...... +..+.+..++.++++...++ .+.+|++.+|+....+.
T Consensus 166 ~s~D---~~v~lwd~~~~~---~~~~l~~H~~~-V~~v~fspdg~~las~s~D~--~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 166 GSDD---NTVAIFEGPPFK---FKSTFGEHTKF-VHSVRYNPDGSLFASTGGDG--TIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp EETT---SCEEEEETTTBE---EEEEECCCSSC-EEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEECBCTTSSSC
T ss_pred EeCC---CeEEEEECCCCe---EeeeeccccCc-eEEEEECCCCCEEEEEECCC--cEEEEECCCCcEeeeecccccccc
Confidence 4332 234455554432 12222222223 33333333244444444443 57788887776554442
Q ss_pred CCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 338 LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 338 ~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+.+..+.|+||++.|+-... -..+.++|+
T Consensus 237 ~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~ 268 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGTKIASASA----DKTIKIWNV 268 (611)
T ss_dssp SSSSCEEEEEECTTSSEEEEEET----TSEEEEEET
T ss_pred ccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeC
Confidence 12456778899999987664432 246888888
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=84.55 Aligned_cols=49 Identities=16% Similarity=0.039 Sum_probs=43.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHH-HhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQE-KLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|+++|++|..||..++.+++++++. .|. .++++++++.||.+.
T Consensus 166 ~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~g~~H~~~ 215 (249)
T 2i3d_A 166 PCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGI-------LITHRTLPGANHFFN 215 (249)
T ss_dssp TCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTC-------CEEEEEETTCCTTCT
T ss_pred ccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCC-------ceeEEEECCCCcccc
Confidence 4559999999999999999999999999986 444 889999999999986
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-06 Score=93.89 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=97.6
Q ss_pred CCCCCcEEEEeeCCCCCCCh----HHHHHHHHHHHhhhccCCCCC---CcEEEEEeCCCCCCCCCccccchhhhhHHHHH
Q psy1288 643 GKQYPATLLMTADHDDRVSP----VHSLKFAATLQEKLRDYPHQT---NPLLIRIETKAGHGGGKPTTKQFPLTIPVIYF 715 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~----~~s~~~~~~L~~~~~~~~~~~---~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~f 715 (1012)
..++|.|+++||.....-.+ .....+...|.+. + ..+++.++..++.+.+..+. .....+++.+
T Consensus 66 ~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~-------g~~~~~ivv~pd~~~~~~~~~~~~--~~~~~~l~~~ 136 (297)
T 1gkl_A 66 NKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMN-------GELEPLIVVTPTFNGGNCTAQNFY--QEFRQNVIPF 136 (297)
T ss_dssp TSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHT-------TSSCCEEEEECCSCSTTCCTTTHH--HHHHHTHHHH
T ss_pred CCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHc-------CCCCCEEEEEecCcCCccchHHHH--HHHHHHHHHH
Confidence 36899888899975432111 1123444555554 3 23444433322221111111 1123456778
Q ss_pred HHHhCCCCCC-------CCCCCCCc--cCCccccccCccceeeeccccccccchhhhcccccCCCCCCCCCCCcccCCCC
Q psy1288 716 YLTSGPVLQR-------YPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDYGSP 786 (1012)
Q Consensus 716 l~~~l~~~~~-------~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 786 (1012)
+++....... ..++.+++ |.|.| ++.++.....+|++|.+.++= .+..|....|.
T Consensus 137 i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~G-------G~~al~~a~~~p~~f~~~v~~--------sg~~~~~~~~~- 200 (297)
T 1gkl_A 137 VESKYSTYAESTTPQGIAASRMHRGFGGFAMG-------GLTTWYVMVNCLDYVAYFMPL--------SGDYWYGNSPQ- 200 (297)
T ss_dssp HHHHSCSSCSSCSHHHHHTTGGGEEEEEETHH-------HHHHHHHHHHHTTTCCEEEEE--------SCCCCBSSSHH-
T ss_pred HHHhCCccccccccccccCCccceEEEEECHH-------HHHHHHHHHhCchhhheeeEe--------ccccccCCccc-
Confidence 8876554210 12334433 88999 777666556667777653331 01112111110
Q ss_pred CChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHh-cCC--CCCCCCEEEEEeCCC
Q psy1288 787 ANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKL-RDY--PHQTNPLLIRIETKA 863 (1012)
Q Consensus 787 ~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~ 863 (1012)
+.......+...+++... ..++++.+|++|..+ .++.+++++|+++| ..+ -..+.++.+.++|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~----------~~~l~~~~G~~D~~~--~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~g~ 268 (297)
T 1gkl_A 201 DKANSIAEAINRSGLSKR----------EYFVFAATGSEDIAY--ANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGA 268 (297)
T ss_dssp HHHHHHHHHHHHHTCCTT----------SCEEEEEEETTCTTH--HHHHHHHHHHHTSTTCCBBSCTTTCCEEEEEETTC
T ss_pred hhhhHHHHHHhhccCCcC----------cEEEEEEeCCCcccc--hhHHHHHHHHHHcCCccccccccCCceEEEECCCC
Confidence 000111111122233222 266777899999875 48899999999987 100 001128999999999
Q ss_pred CCCCC
Q psy1288 864 GHGGG 868 (1012)
Q Consensus 864 gH~~~ 868 (1012)
||++.
T Consensus 269 gH~~~ 273 (297)
T 1gkl_A 269 THWWG 273 (297)
T ss_dssp CSSHH
T ss_pred CcCHH
Confidence 99864
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=84.44 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
+..+.|+++||+.+... .|... .. |. .++.|+.+|.+|.+.. . .....++++.+.+..++..-.
T Consensus 19 ~~~~~lv~lhg~~~~~~--~~~~~-~~-l~-~~~~v~~~d~~G~~~~-~---------~~~~~~~~~~~~~~~~i~~~~- 82 (265)
T 3ils_A 19 VARKTLFMLPDGGGSAF--SYASL-PR-LK-SDTAVVGLNCPYARDP-E---------NMNCTHGAMIESFCNEIRRRQ- 82 (265)
T ss_dssp TSSEEEEEECCTTCCGG--GGTTS-CC-CS-SSEEEEEEECTTTTCG-G---------GCCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCCCHH--HHHHH-Hh-cC-CCCEEEEEECCCCCCC-C---------CCCCCHHHHHHHHHHHHHHhC-
Confidence 45678899999865443 23332 23 54 5899999999995321 1 011233444433332332211
Q ss_pred CCCcEEEEecChHHHHHHHHHh---hCCCceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACIN---QRPDLFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~---~~p~~f~a~v~~~~ 545 (1012)
...++.++|||+||.++..++. .+++.+...+...+
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~ 121 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDA 121 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence 1247899999999999988876 56777877776654
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.9e-06 Score=93.17 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=41.3
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+|+||+||++|..|+ ++.+++++|++.|+ ++++++++++||++..
T Consensus 286 pP~Lii~G~~D~~~~--~~~~~~~~l~~~g~-------~~~~~~~~g~gH~~~~ 330 (351)
T 2zsh_A 286 PKSLVVVAGLDLIRD--WQLAYAEGLKKAGQ-------EVKLMHLEKATVGFYL 330 (351)
T ss_dssp CEEEEEEETTSTTHH--HHHHHHHHHHHTTC-------CEEEEEETTCCTTTTS
T ss_pred CCEEEEEcCCCcchH--HHHHHHHHHHHcCC-------CEEEEEECCCcEEEEe
Confidence 599999999999887 78999999999987 9999999999999864
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-05 Score=83.96 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||..+... .|... ...|.+.||.|+.+|.||.|..... ....++++.+.+..+++.-..+.
T Consensus 16 ~~~vvllHG~~~~~~--~w~~~-~~~L~~~~~~vi~~Dl~GhG~S~~~---------~~~~~~~~a~~l~~~l~~l~~~~ 83 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA--DWQPV-LSHLARTQCAALTLDLPGHGTNPER---------HCDNFAEAVEMIEQTVQAHVTSE 83 (264)
T ss_dssp BCEEEEECCTTCCGG--GGHHH-HHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTT
T ss_pred CCcEEEEcCCCCCHH--HHHHH-HHHhcccCceEEEecCCCCCCCCCC---------CccCHHHHHHHHHHHHHHhCcCC
Confidence 478999999765442 35443 4556546999999999998865321 01234555555555555432222
Q ss_pred CcEEEEecChHHHHHHH---HHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAA---CINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~---~~~~~p~~f~a~v~~~~ 545 (1012)
.++.++|||+||.+++. ++.++|++++++|...+
T Consensus 84 ~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~ 120 (264)
T 1r3d_A 84 VPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGG 120 (264)
T ss_dssp SEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESC
T ss_pred CceEEEEECHhHHHHHHHHHHHhhCccccceEEEecC
Confidence 23999999999999999 77788999999887765
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.3e-07 Score=97.58 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.+|+||+||++|+.++ |+.+++++|++.|+ +++++++|+.+|+|.
T Consensus 247 lpP~li~~G~~D~~~~--~~~~~a~~l~~~g~-------~~~l~~~~g~~H~f~ 291 (317)
T 3qh4_A 247 LPATLITCGEIDPFRD--EVLDYAQRLLGAGV-------STELHIFPRACHGFD 291 (317)
T ss_dssp CCCEEEEEEEESTTHH--HHHHHHHHHHHTTC-------CEEEEEEEEEETTHH
T ss_pred CCceeEEecCcCCCch--hHHHHHHHHHHcCC-------CEEEEEeCCCccchh
Confidence 3699999999999987 89999999999988 999999999999964
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=98.01 E-value=5.4e-07 Score=96.84 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=44.9
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+.+|+||+||++|..||+.++.+++++|+..|+ +++++++++.||.+.
T Consensus 211 ~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~-------~~~~~~~~~~gH~~~ 258 (273)
T 1vkh_A 211 FSIDMHLVHSYSDELLTLRQTNCLISCLQDYQL-------SFKLYLDDLGLHNDV 258 (273)
T ss_dssp HTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTC-------CEEEEEECCCSGGGG
T ss_pred cCCCEEEEecCCcCCCChHHHHHHHHHHHhcCC-------ceEEEEeCCCccccc
Confidence 559999999999999999999999999999988 999999999999864
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=95.92 Aligned_cols=129 Identities=22% Similarity=0.188 Sum_probs=83.5
Q ss_pred CCCCceEEEEEEEeCCCC---CCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh-
Q psy1288 410 SKDGTKIPMFILSRKGAQ---LDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG- 484 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~---~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~- 484 (1012)
|.|... ..++.|.... ..++.|+||++|||...... ..+... .+....|++|+.+|||.+. +| |....
T Consensus 108 sEdcL~--l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~--~la~~~~~vvv~~~YRl~~-~G--fl~~~~ 180 (574)
T 3bix_A 108 SEDCLY--LNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDGS--VLASYGNVIVITVNYRLGV-LG--FLSTGD 180 (574)
T ss_dssp CSCCCE--EEEEEEC--------CCEEEEEECCCSSSSSCCGGGSCCH--HHHHHHTCEEEEECCCCHH-HH--HCCCSS
T ss_pred CCcCCE--EEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCch--hhhccCCEEEEEeCCcCcc-cc--cCcCCC
Confidence 445544 4567776532 23568999999998533322 224432 2333336999999999532 00 10000
Q ss_pred hcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCC---CceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRP---DLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~ 545 (1012)
....+...+.|..++++|+.++. -.||++|.|+|.|+||.++..++.... .+|+.+|+.+|
T Consensus 181 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg 247 (574)
T 3bix_A 181 QAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSG 247 (574)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESC
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcC
Confidence 11123345789999999999862 269999999999999999988876543 57999998887
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00057 Score=81.35 Aligned_cols=180 Identities=14% Similarity=0.121 Sum_probs=100.8
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
..+..++|||||++|+..... + .|+++|..+...............++|+||++.|+....+....-. +. ..
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d-~----~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w-~~--~~ 457 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDD-K----TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW-NR--NG 457 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETT-S----EEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE-ET--TS
T ss_pred CCeEEEEECCCCCEEEEEeCC-C----EEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEE-EC--CC
Confidence 357789999999999865432 2 7888896544333333333345778999999988776644210000 00 00
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEc
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIH 316 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (1012)
+++.........+....|+|||+.|+..+. +..+...+..... .+.+..+. ..+..-...++++.| +....
T Consensus 458 ~~~~~~~~~~~~v~~~~~spd~~~las~~~----d~~i~iw~~~~~~---~~~~~~h~-~~v~~l~~s~dg~~l-~s~~~ 528 (577)
T 2ymu_A 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNRNGQL---LQTLTGHS-SSVRGVAFSPDGQTI-ASASD 528 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSCEEEEEET----TSEEEEEETTSCE---EEEEECCS-SCEEEEEECTTSSCE-EEEET
T ss_pred CEEEEEcCCCCCEEEEEEcCCCCEEEEEeC----CCEEEEEcCCCCE---EEEEeCCC-CCEEEEEEcCCCCEE-EEEEC
Confidence 111111011123444468999998877664 3346666654321 23333222 333222223343444 44444
Q ss_pred CceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEE
Q psy1288 317 HVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIF 356 (1012)
Q Consensus 317 ~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~ 356 (1012)
++ .|.+|+. +|+....+....+.+..+.|+||++.|+
T Consensus 529 dg--~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 529 DK--TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp TS--EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred cC--EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 44 5788887 6766566655556677889999998765
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0012 Score=78.51 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=109.7
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
..+..+++||||++|+..... | .|.++|..+...............++|+|||+.|+....+....-. +. +.
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~d-g----~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~-~~--~~ 416 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDD-K----TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NR--NG 416 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETT-S----EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE-CT--TC
T ss_pred CCEEEEEECCCCCEEEEEeCC-C----EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE-eC--CC
Confidence 356788999999999876532 2 6888897544333333333445789999999988876644210000 00 01
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEc
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIH 316 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (1012)
+++.........+....|+||++.|+..+.. ..+...++.... ...+..+. .. +..+.+..++.+++....
T Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d----~~v~~w~~~~~~---~~~~~~~~-~~-v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDD----KTVKLWNRNGQL---LQTLTGHS-SS-VRGVAFSPDGQTIASASD 487 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTSCE---EEEEECCS-SC-EEEEEECTTSCEEEEEET
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEcCC----CEEEEEECCCCE---EEEEcCCC-CC-EEEEEEcCCCCEEEEEeC
Confidence 1111111111233344589999988776642 356666654322 23333332 22 333333332444444444
Q ss_pred CceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 317 HVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 317 ~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++ .+.+|+. +|+..+.+......+..+.++||++.|+.... -..|.++|.
T Consensus 488 d~--~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~----dg~v~lwd~ 537 (577)
T 2ymu_A 488 DK--TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNR 537 (577)
T ss_dssp TS--EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT
T ss_pred CC--EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC----cCEEEEEeC
Confidence 43 5777887 67766666655566778899999987664432 246888887
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00024 Score=79.56 Aligned_cols=249 Identities=7% Similarity=-0.090 Sum_probs=114.7
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcE-EEEEEeCC-----CC----
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKT-LAYCLSSS-----GS---- 180 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~-iAy~~~~~-----G~---- 180 (1012)
.+|+|+++|.... + .-.+|..+. +++...+.... ..+ ....+.|||||++ ++|+.+.+ ++
T Consensus 47 ~spdg~~l~~~~~-~---~v~~~~~~~-~g~~~~~~~~~---~~g--~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 47 FDHERKNIYGAAM-K---KWSSFAVKS-PTEIVHEASHP---IGG--HPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp ECTTSSEEEEEEB-T---EEEEEEEEE-TTEEEEEEEEE---CCS--SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred ECCCCCEEEEEcc-c---eEEEEEECC-CCCEEEeeEee---cCC--CCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 4588988765433 2 344554432 34433332210 011 1335789999997 45655410 00
Q ss_pred ceEEEEEEECC-CCceec-eee----cceeeeeeEEeeCCCeEEEEecCCCCCcc--cCCCCCceEEEEeec-c-cccee
Q psy1288 181 DWTSMHFKDVA-TGKEYP-EVL----HRLKFVSIAWTHDHKGVFYSNQEPKSKSK--KHSKKNRSSAYHLTV-N-VAPIT 250 (1012)
Q Consensus 181 ~~~~L~v~dl~-tg~~~~-~t~----~~~~~~~~~WSpDG~~l~y~~~~~~~~g~--~~~~~~~~l~~~~~~-~-~~~i~ 250 (1012)
....+.+++++ .|+... ... .......++|||||+.|+.........-. .+.......+..... . .....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 01256777775 355432 111 22335779999999987655321110000 010001111111110 0 12233
Q ss_pred eeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccC-cEEe--eccC-CC-c-------eeeeeE--EecCCEEEEEEEc
Q psy1288 251 SQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESN-WKTL--IEEN-KD-D-------VLDWAT--CVANDKLILSYIH 316 (1012)
Q Consensus 251 ~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~-~~~l--~~~~-~~-~-------~~~~~~--~~~~~~l~~~~~~ 316 (1012)
...|+|||+.||+....+ ....++.++..+++... ...+ ++.. .. . ....+. ..+++.|++....
T Consensus 197 ~~~~spdg~~l~v~~~~~-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAG-NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EeEECCCCCEEEEEECCC-CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 446999999998876432 23455555554433100 0111 2211 01 1 122233 3455677665543
Q ss_pred Cc---eEEEEEEecC-CCceeee---ecCCceEEEeecccc---cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 317 HV---KNVMHLHDLA-SGKHLYT---FPLDVGTIVGFSGKK---KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 317 ~g---~~~l~~~dl~-~G~~~~~---l~~~~~~v~~~~~sp---dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.. ...|.+|+++ +|+.... +.........+.++| ||+.|++.... . ..+.++++
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-~--~~v~v~~~ 339 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-E--GWLEIYRW 339 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-S--CEEEEEEE
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-C--CeEEEEEE
Confidence 32 1267777774 5654321 221111223456788 78887765432 1 34555555
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0016 Score=70.57 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=119.5
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|++++....+ +.-.|| +...++....+. .+...+....|+|||++|+-... +| .|+++|+.
T Consensus 74 ~~~~~~l~s~~~d---~~i~vw--d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~-d~----~i~iwd~~ 137 (312)
T 4ery_A 74 SSDSNLLVSASDD---KTLKIW--DVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGSF-DE----SVRIWDVK 137 (312)
T ss_dssp CTTSSEEEEEETT---SEEEEE--ETTTCCEEEEEE------CCSSCEEEEEECSSSSEEEEEET-TS----CEEEEETT
T ss_pred cCCCCEEEEECCC---CEEEEE--ECCCCcEEEEEc------CCCCCEEEEEEcCCCCEEEEEeC-CC----cEEEEECC
Confidence 3677776654432 234444 444443332222 12235678899999999876543 23 69999999
Q ss_pred CCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCC
Q psy1288 192 TGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAP 270 (1012)
Q Consensus 192 tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~ 270 (1012)
+++.... .........+.|+|||+.|+....+....-. +......+..........+....|+|+|+.|+..+.
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 212 (312)
T 4ery_A 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL---- 212 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE-ETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----
T ss_pred CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----
Confidence 8876542 2223345789999999987766544211000 000000010000001123334468999998887664
Q ss_pred CceEEEEeCCCCcccCcEEeeccCCCc-eeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeeccc
Q psy1288 271 NYRLITIDFDNFAESNWKTLIEENKDD-VLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGK 349 (1012)
Q Consensus 271 ~~~L~~~dl~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~s 349 (1012)
+..+...|+.+++. ...+..+.... .+.......++.+++....+ ..|.+|++.+++....+......+..++++
T Consensus 213 d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 213 DNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSED--NLVYIWNLQTKEIVQKLQGHTDVVISTACH 288 (312)
T ss_dssp TTEEEEEETTTTEE--EEEECSSCCSSSCCCEEEECSSSCEEEECCTT--SCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCeEEEEECCCCcE--EEEEEecCCceEEEEEEEEeCCCcEEEEECCC--CEEEEEECCCchhhhhhhccCCcEEEEeec
Confidence 34677778766541 12222222111 11111122223344443333 457889997777666665555556678899
Q ss_pred ccCcEEEEEe
Q psy1288 350 KKYSEIFYSF 359 (1012)
Q Consensus 350 pdg~~l~~~~ 359 (1012)
|++..++...
T Consensus 289 p~~~~l~s~~ 298 (312)
T 4ery_A 289 PTENIIASAA 298 (312)
T ss_dssp SSSSEEEEEE
T ss_pred CcCCceEEEE
Confidence 9988766443
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.1e-06 Score=89.49 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=42.3
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.+..|+||+||++|..||+.++.+++++|+..|+ ++.+ ++++.||++.
T Consensus 186 ~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~-------~~~~-~~~~~gH~~~ 233 (251)
T 2r8b_A 186 KPTRRVLITAGERDPICPVQLTKALEESLKAQGG-------TVET-VWHPGGHEIR 233 (251)
T ss_dssp CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSS-------EEEE-EEESSCSSCC
T ss_pred ccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCC-------eEEE-EecCCCCccC
Confidence 4569999999999999999999999999999877 7777 5567899984
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.4e-05 Score=83.38 Aligned_cols=102 Identities=10% Similarity=-0.032 Sum_probs=62.0
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHH-HHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAA-EYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~-~~l~~~~~ 508 (1012)
+..|.||++||.........|.. +...|. .|+.|+.+|.+|.|.... ....++++...+ +.+....
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~-~~~~L~-~~~~v~~~d~~G~G~~~~----------~~~~~~~~~~~~~~~l~~~~- 145 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSR-LAEELD-AGRRVSALVPPGFHGGQA----------LPATLTVLVRSLADVVQAEV- 145 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHH-HHHHHC-TTSEEEEEECTTSSTTCC----------EESSHHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEECCCCcCCCHHHHHH-HHHHhC-CCceEEEeeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhc-
Confidence 45688999999311111223433 345564 699999999999773211 111233333222 2222221
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhC---CCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQR---PDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~~ 545 (1012)
...++.++|+|+||.++..++.+. |+.+..+|...+
T Consensus 146 -~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~ 184 (319)
T 3lcr_A 146 -ADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDS 184 (319)
T ss_dssp -TTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESC
T ss_pred -CCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECC
Confidence 225799999999999999888776 777877777655
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.1e-05 Score=89.11 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=41.3
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+|+||++|++|+.+ .++.+++++|+..|+ +++++++++.||++..
T Consensus 253 ~P~lii~G~~D~l~--~~~~~~a~~l~~ag~-------~~~~~~~~g~~H~~~~ 297 (323)
T 3ain_A 253 PPALIITAEHDPLR--DQGEAYANKLLQSGV-------QVTSVGFNNVIHGFVS 297 (323)
T ss_dssp CCEEEEEETTCTTH--HHHHHHHHHHHHTTC-------CEEEEEETTCCTTGGG
T ss_pred CHHHEEECCCCccH--HHHHHHHHHHHHcCC-------CEEEEEECCCcccccc
Confidence 69999999999988 489999999999988 9999999999999863
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.8e-06 Score=92.13 Aligned_cols=44 Identities=20% Similarity=0.087 Sum_probs=40.8
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+|+||+||++|..| .++..++++|+..|+ +++++++++.||++.
T Consensus 242 ~P~lii~G~~D~~~--~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 285 (310)
T 2hm7_A 242 PPAYIATAQYDPLR--DVGKLYAEALNKAGV-------KVEIENFEDLIHGFA 285 (310)
T ss_dssp CCEEEEEEEECTTH--HHHHHHHHHHHHTTC-------CEEEEEEEEEETTGG
T ss_pred CCEEEEEecCCCch--HHHHHHHHHHHHCCC-------CEEEEEeCCCccchh
Confidence 59999999999988 589999999999988 999999999999985
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.2e-06 Score=95.91 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=47.8
Q ss_pred hHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 793 EYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 793 ~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
..+..++|...+. ++.+|+||+||++|..||+.++.+++++|+. +++++++++.||+.
T Consensus 243 ~~~~~~~~~~~~~-------~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~H~~ 300 (318)
T 1l7a_A 243 KTLSYFDIMNLAD-------RVKVPVLMSIGLIDKVTPPSTVFAAYNHLET----------KKELKVYRYFGHEY 300 (318)
T ss_dssp HHHHTTCHHHHGG-------GCCSCEEEEEETTCSSSCHHHHHHHHHHCCS----------SEEEEEETTCCSSC
T ss_pred HhhccccHHHHHh-------hCCCCEEEEeccCCCCCCcccHHHHHhhcCC----------CeeEEEccCCCCCC
Confidence 3445566777777 7889999999999999999999988877653 57999999999984
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.3e-05 Score=83.35 Aligned_cols=103 Identities=14% Similarity=0.024 Sum_probs=67.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHH-HHHHcC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAE-YLIASG 507 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~-~l~~~~ 507 (1012)
.+..|.||++||..+......|.. ....+. .++.|+.+|.+|.|.... ....++++...+. .+.+.
T Consensus 64 ~~~~~~lvllhG~~~~~~~~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~----------~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 64 GPGEVTVICCAGTAAISGPHEFTR-LAGALR-GIAPVRAVPQPGYEEGEP----------LPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CSCSSEEEECCCSSTTCSTTTTHH-HHHHTS-SSCCBCCCCCTTSSTTCC----------BCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEECCCcccCcHHHHHH-HHHhcC-CCceEEEecCCCCCCCCC----------CCCCHHHHHHHHHHHHHHh-
Confidence 345688999999765432234443 334454 479999999999775211 1223444444332 34333
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCC---CceeEEEEccC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRP---DLFGAAIVQVG 545 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~ 545 (1012)
.+..++.++|+|+||.++..++.++| +.++++|...+
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~ 170 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDV 170 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTC
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECC
Confidence 23467999999999999999998887 47888887766
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=97.94 E-value=7.2e-06 Score=85.12 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=44.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCC--EEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNP--LLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~gH~~ 867 (1012)
++.+|+|++||++|..||+.++.++++.|++.+. + ++++++++.||.+
T Consensus 163 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~H~~ 212 (232)
T 1fj2_A 163 NRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVN-------PANVTFKTYEGMMHSS 212 (232)
T ss_dssp TTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSC-------GGGEEEEEETTCCSSC
T ss_pred cCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCC-------CCceEEEEeCCCCccc
Confidence 5669999999999999999999999999999876 5 9999999999988
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.94 E-value=0.001 Score=72.16 Aligned_cols=196 Identities=15% Similarity=0.088 Sum_probs=111.4
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..++|||||++||.... +| .|.++|+.+++..... ........++|+|||+.|+....+....-. +....
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~-dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw-d~~~~ 97 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSA-DK----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW-DVSSG 97 (312)
T ss_dssp SCEEEEEECTTSSEEEEEET-TS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE-ETTTC
T ss_pred CcEEEEEECCCCCEEEEeeC-CC----eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE-ECCCC
Confidence 45788999999999886543 23 6889999888765422 223346789999999988776654210000 00000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYI 315 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (1012)
+...........+....|+|+++.|+..+.. ..+...|+.++. ....+..... .+..+.+..++.+++...
T Consensus 98 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~---~~~~~~~~~~-~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 98 -KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVKTGK---CLKTLPAHSD-PVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp -CEEEEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEETTTCC---EEEEECCCSS-CEEEEEECTTSSEEEEEE
T ss_pred -cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCE---EEEEecCCCC-cEEEEEEcCCCCEEEEEe
Confidence 0100000011223344588999887776643 457777876654 1222222222 233333333233344444
Q ss_pred cCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++ .+.+|++.+++....+... ...+..+.++|+++.++..... ..+..+|+
T Consensus 169 ~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~iwd~ 221 (312)
T 4ery_A 169 YDG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD----NTLKLWDY 221 (312)
T ss_dssp TTS--CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT----TEEEEEET
T ss_pred CCC--cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC----CeEEEEEC
Confidence 443 5788899777654444332 3445667889999887765432 46888998
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=83.96 Aligned_cols=64 Identities=19% Similarity=0.059 Sum_probs=54.0
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCC-CCceEEEcccCCCCCCCcchHHHHHHHH-HHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQ-YPATLLMTADHDDRVSPVHSLKFAATLQ-EKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~-~~p~l~~~g~~D~rv~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+...++..... ++ .+|+|+++|++|..||..++.++++.++ ..|+ .+++++++++.||.+.
T Consensus 155 ~~~~~~~~~~~~~~-------~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~H~~~ 220 (238)
T 1ufo_A 155 VLALYQAPPATRGE-------AYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPE------GRLARFVEEGAGHTLT 220 (238)
T ss_dssp HHHHHHSCGGGCGG-------GGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTT------CCEEEEEETTCCSSCC
T ss_pred cchhhcCChhhhhh-------hccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCC------CceEEEEeCCCCcccH
Confidence 45566777877777 77 8999999999999999999999999998 7643 1689999999999874
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.93 E-value=7e-05 Score=79.48 Aligned_cols=50 Identities=18% Similarity=0.100 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC-----ceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD-----LFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~~ 545 (1012)
+|+..+++.+.+.- ...++.++|||+||.++..++.++|+ .+...|...+
T Consensus 78 ~~l~~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~ 132 (254)
T 3ds8_A 78 KWLKIAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGS 132 (254)
T ss_dssp HHHHHHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESC
T ss_pred HHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcC
Confidence 45555556666542 23689999999999999999999888 7888888776
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0006 Score=75.81 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=110.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece---ee--cceeeeeeEEeeCCCeEEEEecCCCCCcccCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE---VL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHS 232 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~---t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~ 232 (1012)
.+..++||||++ |+ +...+| .|+++|+++++.... .. .......++|+|||+.|+-.+.+....-. +.
T Consensus 84 ~v~~~~~s~d~~-l~-~~s~dg----~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw-d~ 156 (344)
T 4gqb_B 84 GVADLTWVGERG-IL-VASDSG----AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW-DL 156 (344)
T ss_dssp CEEEEEEETTTE-EE-EEETTS----EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE-ET
T ss_pred CEEEEEEeCCCe-EE-EEECCC----EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE-EC
Confidence 477899999975 44 334333 799999998875321 11 12235789999999988776654211000 00
Q ss_pred CCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEE
Q psy1288 233 KKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLI 311 (1012)
Q Consensus 233 ~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~ 311 (1012)
. ..+.+.........+....|++++..+++....+ ..|...|+.+++. ...+...........+.+. ++..++
T Consensus 157 ~-~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D---~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 157 A-QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED---NRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp T-TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETT---SCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEE
T ss_pred C-CCcEEEEEcCcCCceEEEEecCCCCCceeeeccc---cccccccccccce--eeeeecceeeccceeeeecCCCCcce
Confidence 0 0111111100112344446889988776665443 3466778776541 2233222222223333332 334455
Q ss_pred EEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 312 LSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 312 ~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+....++ .|.+||+.+++....+......+..+.|+|++..++++.+.. ..|.++|+
T Consensus 231 ~sg~~dg--~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D---~~i~vwd~ 287 (344)
T 4gqb_B 231 VFGDENG--TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED---CSLAVLDS 287 (344)
T ss_dssp EEEETTS--EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT---SCEEEECT
T ss_pred EEeccCC--cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC---CeEEEEEC
Confidence 5444443 578889987876666665556677889999997766555432 35788898
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.7e-06 Score=90.64 Aligned_cols=56 Identities=7% Similarity=-0.047 Sum_probs=48.5
Q ss_pred HhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 794 YLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 794 ~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.+...||+.... ++.+|+||+||++|..||+.++.+++++++ + +++++++.||.+.
T Consensus 190 ~~~~~~~~~~~~-------~~~~P~lii~G~~D~~~~~~~~~~~~~~~~---~---------~~~~~~~~~H~~~ 245 (262)
T 2pbl_A 190 AAIAESPVEMQN-------RYDAKVTVWVGGAERPAFLDQAIWLVEAWD---A---------DHVIAFEKHHFNV 245 (262)
T ss_dssp HHHHTCGGGCCC-------CCSCEEEEEEETTSCHHHHHHHHHHHHHHT---C---------EEEEETTCCTTTT
T ss_pred HHHhcCcccccC-------CCCCCEEEEEeCCCCcccHHHHHHHHHHhC---C---------eEEEeCCCCcchH
Confidence 345678888887 888999999999999999999999998886 3 7789999999764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.92 E-value=0.002 Score=72.06 Aligned_cols=248 Identities=13% Similarity=0.123 Sum_probs=128.5
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC-----CCCceE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS-----SGSDWT 183 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~-----~G~~~~ 183 (1012)
..|.|+|+++|-.-.........+++.+....+...-+.. |.. - .+.+||||+++..+... .|....
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v------G~~-P-~va~spDG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG------GFL-P-NPVVADDGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE------CSS-C-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC------CCC-C-cEEECCCCCEEEEEcccccccccCCCCC
Confidence 4677999987654322111125788888765543322221 211 1 38999999998665431 122335
Q ss_pred EEEEEECCCCceece-eecc-------eeeeeeEEeeCCCeEEEEecC-CCCCcccCCCC--------------------
Q psy1288 184 SMHFKDVATGKEYPE-VLHR-------LKFVSIAWTHDHKGVFYSNQE-PKSKSKKHSKK-------------------- 234 (1012)
Q Consensus 184 ~L~v~dl~tg~~~~~-t~~~-------~~~~~~~WSpDG~~l~y~~~~-~~~~g~~~~~~-------------------- 234 (1012)
.|.++|+++++.... .... .....+.+||||+++|..... .......+...
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~ 189 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP 189 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCC
Confidence 799999999987542 2221 123568999999988766432 11000000000
Q ss_pred --------CceEEEEeec--cc------ccee--------eeeeecCCCEEEEEECCCCCCceEEEEeCCCCcc---cCc
Q psy1288 235 --------NRSSAYHLTV--NV------APIT--------SQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE---SNW 287 (1012)
Q Consensus 235 --------~~~l~~~~~~--~~------~~i~--------~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~---~~~ 287 (1012)
+.++++.... +. ..+. ...|...+++++|.+. ...++.+|+.+... ..|
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~----~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY----TGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT----TSEEEEEECTTSSCEECCCE
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC----CCEEEEEECCCCcceeecce
Confidence 0001111000 00 0000 0122222235555554 24677787755431 111
Q ss_pred EEeecc-----C--CCceeeeeE-EecCCEEEEEEEcC-------ceEEEEEEecCCCceeeeecCCceEEEeecccccC
Q psy1288 288 KTLIEE-----N--KDDVLDWAT-CVANDKLILSYIHH-------VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKY 352 (1012)
Q Consensus 288 ~~l~~~-----~--~~~~~~~~~-~~~~~~l~~~~~~~-------g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg 352 (1012)
. ++.. . +... +.+. ..+++++|+....+ .-.+++++|+.+++..+.++.+. ...++.+++|+
T Consensus 266 ~-~~~~~~~~~g~~p~g~-q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~ 342 (386)
T 3sjl_D 266 E-ALTEAERADGWRPGGW-QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDE 342 (386)
T ss_dssp E-SSCHHHHHTTEEECSS-SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSS
T ss_pred e-ccccccccccccCCCc-ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCC
Confidence 1 1100 0 0000 1111 23457888876532 24789999998888777776542 34467889999
Q ss_pred cEEEEEecCCCCCcEEEEEeC
Q psy1288 353 SEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 353 ~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.++|+.+. .-.++..+|.
T Consensus 343 ~~~ly~tn~--~~~~VsViD~ 361 (386)
T 3sjl_D 343 KPLLYALST--GDKTLYIHDA 361 (386)
T ss_dssp SCEEEEEET--TTTEEEEEET
T ss_pred CeEEEEEcC--CCCeEEEEEC
Confidence 755555553 2357899998
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=84.42 Aligned_cols=46 Identities=9% Similarity=-0.108 Sum_probs=43.6
Q ss_pred Cc-eEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 816 PA-TLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 816 ~p-~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.| +||+||++|..||+.++.+++++|++.|+ +++++++++.||++.
T Consensus 170 ~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~-------~~~~~~~~g~~H~~~ 216 (239)
T 3u0v_A 170 LPELFQCHGTADELVLHSWAEETNSMLKSLGV-------TTKFHSFPNVYHELS 216 (239)
T ss_dssp CCCEEEEEETTCSSSCHHHHHHHHHHHHHTTC-------CEEEEEETTCCSSCC
T ss_pred CCCEEEEeeCCCCccCHHHHHHHHHHHHHcCC-------cEEEEEeCCCCCcCC
Confidence 55 99999999999999999999999999988 999999999999987
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00078 Score=76.43 Aligned_cols=232 Identities=11% Similarity=0.114 Sum_probs=125.0
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
..+|+|.+++....++ .-.+| +...+.....+. +........+||||++||..... | .|.++|
T Consensus 63 ~~s~~g~~l~~~~~d~---~v~i~--d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~d-g----~i~iwd 125 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDG---HDFLF--NTIIRDGSKMLK-------RADYTAVDTAKLQMRRFILGTTE-G----DIKVLD 125 (420)
T ss_dssp EEEEEETTEEEEEETT---EEEEE--ECCSEETTTTSC-------SCCEEEEEEECSSSCEEEEEETT-S----CEEEEC
T ss_pred eeeecCCeEEEEEcCC---cEEEE--EecccceeeEEe-------cCCceEEEEEecCCCEEEEEECC-C----CEEEEe
Confidence 3468999888766543 33444 332221111111 12344556799999999876542 2 689999
Q ss_pred CCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECC
Q psy1288 190 VATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNK 267 (1012)
Q Consensus 190 l~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~ 267 (1012)
+++++..... ........++|+|||+.|+....+....-. .........+ . .....+....|+|+++.|+..+..
T Consensus 126 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~--~h~~~v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 126 SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-I--GHRATVTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp TTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-E--CCSSCEEEEEEETTTTEEEEEETT
T ss_pred CCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-c--CCCCcEEEEEEcCCCCEEEEEcCC
Confidence 9988765432 233346789999999977766544210000 0000000111 0 001234445689999988866643
Q ss_pred CCCCceEEEEeCCCCcccCcEEeecc-CCCceeeeeE---------------------E-ecCCEEEEEEEcCceEEEEE
Q psy1288 268 DAPNYRLITIDFDNFAESNWKTLIEE-NKDDVLDWAT---------------------C-VANDKLILSYIHHVKNVMHL 324 (1012)
Q Consensus 268 ~~~~~~L~~~dl~~~~~~~~~~l~~~-~~~~~~~~~~---------------------~-~~~~~l~~~~~~~g~~~l~~ 324 (1012)
..+...|+.+++. ...+... .....+.... + .+ +.+++....++ .+.+
T Consensus 203 ----~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg--~i~i 273 (420)
T 3vl1_A 203 ----GTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSG--VITV 273 (420)
T ss_dssp ----SCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTS--CEEE
T ss_pred ----CcEEEeECCCCce--eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC-CCEEEEEcCCC--eEEE
Confidence 3466677765431 1111111 0011111111 1 23 44444444443 4788
Q ss_pred EecCCCceeeeecCC-ceEEEeecccccCc-EEEEEecCCCCCcEEEEEeCC
Q psy1288 325 HDLASGKHLYTFPLD-VGTIVGFSGKKKYS-EIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 325 ~dl~~G~~~~~l~~~-~~~v~~~~~spdg~-~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
|++.+++....+... ...+..+.|+|++. .++.... -..|..+|+.
T Consensus 274 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~----dg~i~vwd~~ 321 (420)
T 3vl1_A 274 HNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE----NGMLAQWDLR 321 (420)
T ss_dssp EETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET----TSEEEEEETT
T ss_pred EECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC----CCeEEEEEcC
Confidence 899777655555433 45677889999998 5444332 2468899983
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=97.92 E-value=5.4e-06 Score=91.57 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=41.5
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.+|+||+||++|..| .++.+++++|++.|+ +++++++|+.||++.
T Consensus 249 ~~P~li~~G~~D~~~--~~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 293 (323)
T 1lzl_A 249 LPPTYLSTMELDPLR--DEGIEYALRLLQAGV-------SVELHSFPGTFHGSA 293 (323)
T ss_dssp CCCEEEEEETTCTTH--HHHHHHHHHHHHTTC-------CEEEEEETTCCTTGG
T ss_pred CChhheEECCcCCch--HHHHHHHHHHHHcCC-------CEEEEEeCcCccCcc
Confidence 379999999999988 589999999999988 999999999999975
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.1e-06 Score=95.28 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=41.5
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+|+||+||++|..+| ++.+++++|+..|+ +++++++++.||++.
T Consensus 289 ~P~Lii~G~~D~~~~--~~~~~~~~l~~~g~-------~~~l~~~~g~~H~~~ 332 (361)
T 1jkm_A 289 PPFVVAVNELDPLRD--EGIAFARRLARAGV-------DVAARVNIGLVHGAD 332 (361)
T ss_dssp CCEEEEEETTCTTHH--HHHHHHHHHHHTTC-------CEEEEEETTCCTTHH
T ss_pred CceEEEEcCcCcchh--hHHHHHHHHHHcCC-------CEEEEEeCCCccCcc
Confidence 399999999999998 99999999999988 999999999999975
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=83.34 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=44.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++.+|+||++|++|..||+.++.++++.|+..|+ ++++++++ .||.+.
T Consensus 164 ~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~-------~~~~~~~~-~gH~~~ 211 (226)
T 3cn9_A 164 HKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGV-------EVGWHDYP-MGHEVS 211 (226)
T ss_dssp GGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTC-------CEEEEEES-CCSSCC
T ss_pred ccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCC-------ceeEEEec-CCCCcc
Confidence 5669999999999999999999999999999887 99999999 999874
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0015 Score=78.74 Aligned_cols=196 Identities=10% Similarity=-0.044 Sum_probs=109.4
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCc
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNR 236 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~ 236 (1012)
...+.+||||++||+... + .++++|+++++... +.-.......++|||||+.|+-.+.+....-. ..... .
T Consensus 21 ~~~~~~spdg~~l~~~~~---~---~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~-~ 93 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNG---T---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT-H 93 (611)
T ss_dssp CCCCEECTTSSEEEEEET---T---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT-C
T ss_pred eeEEeeCCCCCEEEeCCC---C---EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc-c
Confidence 446789999999999752 1 78899998776543 22223345789999999988776654211000 00000 0
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEE
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYI 315 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~ 315 (1012)
.+..........+....|+|||+.|+...........+...|.... ...+. ..... +..+.+ +++...++...
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~----~~~l~-gh~~~-v~~v~f~p~~~~~l~s~s 167 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS----NGNLT-GQARA-MNSVDFKPSRPFRIISGS 167 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB----CBCCC-CCSSC-EEEEEECSSSSCEEEEEE
T ss_pred eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC----cceec-CCCCC-ceEEEECCCCCeEEEEEe
Confidence 1111100011234445699999999887754333345666553221 12222 22222 233333 23233445555
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++ .+.+|+..+++....+......+..+.|+||++.|+-.... ..+.++|+
T Consensus 168 ~D~--~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D----~~i~lwd~ 219 (611)
T 1nr0_A 168 DDN--TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD----GTIVLYNG 219 (611)
T ss_dssp TTS--CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred CCC--eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC----CcEEEEEC
Confidence 544 46677876666555555445567788999999876644322 35788887
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.8e-06 Score=85.52 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=44.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++.+|+|++||++|..||+.+++++++.|+..|+ ++++++++ .||.+.
T Consensus 155 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~-------~~~~~~~~-~gH~~~ 202 (218)
T 1auo_A 155 QQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGV-------TVTWQEYP-MGHEVL 202 (218)
T ss_dssp HHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTC-------CEEEEEES-CSSSCC
T ss_pred ccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCC-------ceEEEEec-CCCccC
Confidence 4569999999999999999999999999999877 99999999 999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00078 Score=77.73 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=109.1
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC--CCceecee---ecceeeeeeEEeeCCCeEEEEecCCCCCcc-cC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA--TGKEYPEV---LHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KH 231 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~--tg~~~~~t---~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~ 231 (1012)
.+..++|||||++|+++...+| .|.++|+. +++..... ........++|+|||+.|+....+....-. ..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDK----SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGT----EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEECCCC----eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 4788999999999877776554 68888888 77654432 112335789999999988877543210000 00
Q ss_pred CCCCc-----eEEEEeeccccceeeeeeecC---CCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeE
Q psy1288 232 SKKNR-----SSAYHLTVNVAPITSQYITNE---GPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWAT 303 (1012)
Q Consensus 232 ~~~~~-----~l~~~~~~~~~~i~~~~~s~d---g~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~ 303 (1012)
..... .+.-| ...+....|+|+ ++.|+..+ .+ ..|...|+.++. ....+.......+ ..+.
T Consensus 180 ~~~~~~~~~~~~~~h----~~~v~~~~~sp~~~~~~~l~s~~-~d---~~i~vwd~~~~~--~~~~~~~~h~~~v-~~~~ 248 (450)
T 2vdu_B 180 SIPEEKFTQEPILGH----VSMLTDVHLIKDSDGHQFIITSD-RD---EHIKISHYPQCF--IVDKWLFGHKHFV-SSIC 248 (450)
T ss_dssp SCCCSSCCCCCSEEC----SSCEEEEEEEECTTSCEEEEEEE-TT---SCEEEEEESCTT--CEEEECCCCSSCE-EEEE
T ss_pred Ccccccccceeeecc----cCceEEEEEcCCCCCCcEEEEEc-CC---CcEEEEECCCCc--eeeeeecCCCCce-EEEE
Confidence 00000 00000 023344468998 55554444 32 356666766544 1222232222222 2233
Q ss_pred EecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-------------------------ceEEEeecccccCcEEEEE
Q psy1288 304 CVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-------------------------VGTIVGFSGKKKYSEIFYS 358 (1012)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-------------------------~~~v~~~~~spdg~~l~~~ 358 (1012)
+.+++.|+... .+ ..|.+|++.+|+....+... ...+..+.++|+++.|++.
T Consensus 249 ~sd~~~l~s~~-~d--~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 249 CGKDYLLLSAG-GD--DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp ECSTTEEEEEE-SS--SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred ECCCCEEEEEe-CC--CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 33545555443 33 47889999888755544321 2346677888999887776
Q ss_pred ecCCCCCcEEEEEeC
Q psy1288 359 FMSFLQPTIIFHCNI 373 (1012)
Q Consensus 359 ~ss~~~p~~l~~~d~ 373 (1012)
... -..|.++|+
T Consensus 326 ~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 326 VEA---TKCIIILEM 337 (450)
T ss_dssp ETT---CSEEEEEEE
T ss_pred ECC---CCeEEEEEe
Confidence 632 235777776
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=97.88 E-value=5.3e-05 Score=83.34 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=77.7
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.+|.+... + .++.|.||++||...... .|... ...|.+ .+.|+++|.||.|..... ....
T Consensus 28 ~~g~~l~y~~~---G---~g~~~~vvllHG~~~~~~--~w~~~-~~~L~~-~~~via~Dl~GhG~S~~~-------~~~~ 90 (318)
T 2psd_A 28 VLDSFINYYDS---E---KHAENAVIFLHGNATSSY--LWRHV-VPHIEP-VARCIIPDLIGMGKSGKS-------GNGS 90 (318)
T ss_dssp ETTEEEEEEEC---C---SCTTSEEEEECCTTCCGG--GGTTT-GGGTTT-TSEEEEECCTTSTTCCCC-------TTSC
T ss_pred eCCeEEEEEEc---C---CCCCCeEEEECCCCCcHH--HHHHH-HHHhhh-cCeEEEEeCCCCCCCCCC-------CCCc
Confidence 47777765432 2 233468999999765432 34432 234554 579999999998854221 1112
Q ss_pred chHhHHHHHHHHHHHcCCCCC-CcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 491 NVFDDFQCAAEYLIASGYTQS-SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
..++++...+..+++. .+. +++.++|+|+||.+++.++.++|++++++|...
T Consensus 91 ~~~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~ 143 (318)
T 2psd_A 91 YRLLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHME 143 (318)
T ss_dssp CSHHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEec
Confidence 3456666666666654 234 789999999999999999999999999888754
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=97.87 E-value=3.9e-06 Score=92.26 Aligned_cols=44 Identities=23% Similarity=0.123 Sum_probs=41.0
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+|+||+||++|+.++ ++.+++++|++.|+ +++++++++.||++.
T Consensus 245 ~P~li~~G~~D~l~~--~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 288 (311)
T 1jji_A 245 PPALIITAEYDPLRD--EGEVFGQMLRRAGV-------EASIVRYRGVLHGFI 288 (311)
T ss_dssp CCEEEEEEEECTTHH--HHHHHHHHHHHTTC-------CEEEEEEEEEETTGG
T ss_pred ChheEEEcCcCcchH--HHHHHHHHHHHcCC-------CEEEEEECCCCeecc
Confidence 799999999999984 88999999999988 999999999999985
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.87 E-value=0.001 Score=73.89 Aligned_cols=235 Identities=6% Similarity=-0.008 Sum_probs=122.3
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|++++.... ++.-.||-.. +++.+.+.... .+...+..+.|||||++|+.... +| .|+++|++
T Consensus 17 s~~~~~l~~~~~---d~~v~i~~~~--~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~~~~~-dg----~i~vwd~~ 82 (372)
T 1k8k_C 17 NKDRTQIAICPN---NHEVHIYEKS--GNKWVQVHELK----EHNGQVTGVDWAPDSNRIVTCGT-DR----NAYVWTLK 82 (372)
T ss_dssp CTTSSEEEEECS---SSEEEEEEEE--TTEEEEEEEEE----CCSSCEEEEEEETTTTEEEEEET-TS----CEEEEEEE
T ss_pred CCCCCEEEEEeC---CCEEEEEeCC--CCcEEeeeeec----CCCCcccEEEEeCCCCEEEEEcC-CC----eEEEEECC
Confidence 478887776432 2345555443 34311221111 12346788999999999986543 23 68889998
Q ss_pred CCceece---eecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeecc-ccceeeeeeecCCCEEEEEEC
Q psy1288 192 TGKEYPE---VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVN-VAPITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 192 tg~~~~~---t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~-~~~i~~~~~s~dg~~l~~~tn 266 (1012)
+++.... .........+.|+|||+.|+....+....-. ........+....... ...+....|+|+++.|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 8874332 1123345789999999988877654211000 0000000011110000 123444568999988777664
Q ss_pred CCCCCceEEEEeCCCCc---------------ccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCC
Q psy1288 267 KDAPNYRLITIDFDNFA---------------ESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASG 330 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~---------------~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G 330 (1012)
. ..+...|+.... .......+..... .+..+.+ .+++.++.. ..+ ..+.+|++.++
T Consensus 163 d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~d--~~i~i~d~~~~ 234 (372)
T 1k8k_C 163 D----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWV-SHD--STVCLADADKK 234 (372)
T ss_dssp T----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEE-ETT--TEEEEEEGGGT
T ss_pred C----CCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEE-eCC--CEEEEEECCCC
Confidence 3 345566643110 0001111222222 2333333 343444443 343 35888999777
Q ss_pred ceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 331 KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 331 ~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+....+......+..+.|+|++..++.. .. ..+..+|+
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d----~~i~i~~~ 272 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HD----CFPVLFTY 272 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TT----SSCEEEEE
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eC----CeEEEEEc
Confidence 7666666555567778899988755433 21 23555555
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=97.85 E-value=7.6e-06 Score=84.74 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.+..|+|+++|++|..||..++.++++.|+..+. ++.+ ++++.||.+.
T Consensus 164 ~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~-------~~~~-~~~~~gH~~~ 211 (226)
T 2h1i_A 164 LAGKSVFIAAGTNDPICSSAESEELKVLLENANA-------NVTM-HWENRGHQLT 211 (226)
T ss_dssp CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTC-------EEEE-EEESSTTSCC
T ss_pred ccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCC-------eEEE-EeCCCCCCCC
Confidence 4469999999999999999999999999998877 8898 9999999884
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6.3e-06 Score=91.58 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=40.9
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
..|+||+||++|..|| ++.+++++|++.+. ++++++++++||++.
T Consensus 265 ~~P~Lvi~G~~D~~~~--~~~~~~~~l~~~~~-------~~~~~~~~g~gH~~~ 309 (338)
T 2o7r_A 265 GWRVMVVGCHGDPMID--RQMELAERLEKKGV-------DVVAQFDVGGYHAVK 309 (338)
T ss_dssp TCEEEEEEETTSTTHH--HHHHHHHHHHHTTC-------EEEEEEESSCCTTGG
T ss_pred CCCEEEEECCCCcchH--HHHHHHHHHHHCCC-------cEEEEEECCCceEEe
Confidence 3499999999999998 77889999999877 999999999999975
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.3e-06 Score=92.60 Aligned_cols=56 Identities=20% Similarity=0.084 Sum_probs=46.1
Q ss_pred cCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 797 GYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 797 ~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
..||+...- +..+|+||+||++|+.++ ++..++.+|+..|+ +++++++++.||++.
T Consensus 229 ~~~p~~~~l-------~~~~P~lii~G~~D~~~~--~~~~~~~~l~~~g~-------~~~~~~~~g~~H~~~ 284 (311)
T 2c7b_A 229 KASPLLADL-------GGLPPALVVTAEYDPLRD--EGELYAYKMKASGS-------RAVAVRFAGMVHGFV 284 (311)
T ss_dssp TTCGGGSCC-------TTCCCEEEEEETTCTTHH--HHHHHHHHHHHTTC-------CEEEEEETTCCTTGG
T ss_pred ccCcccccc-------cCCCcceEEEcCCCCchH--HHHHHHHHHHHCCC-------CEEEEEeCCCccccc
Confidence 346665433 223599999999999986 78889999999988 999999999999985
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0011 Score=72.97 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=82.3
Q ss_pred eEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecce--eeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceE
Q psy1288 161 SYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRL--KFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSS 238 (1012)
Q Consensus 161 ~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~--~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l 238 (1012)
.+.++++++.++- ....+ +|+++|+++++......... ....++|+|||+.++++.......-..+... .+.
T Consensus 4 g~~~~~~~~~~v~-~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIV-TNYPN----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKN 77 (349)
T ss_dssp CCCCCTTCEEEEE-EETTT----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEE
T ss_pred cccccCCCEEEEE-eCCCC----eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcE
Confidence 3567877765543 33322 89999999998754322222 3467899999998877653211000001110 111
Q ss_pred EEEeeccc------cceeeeeeecCCCEEEEEECC--------CCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE
Q psy1288 239 AYHLTVNV------APITSQYITNEGPQFVFKTNK--------DAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC 304 (1012)
Q Consensus 239 ~~~~~~~~------~~i~~~~~s~dg~~l~~~tn~--------~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (1012)
........ ..+....|+|||+.|++..+. ......|+.+|+.+++........... .. +..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~-~~~~~~ 155 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQ-VYLMRA 155 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SS-CCCEEE
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-Cc-ccceeE
Confidence 11111000 112234599999999998743 001257888998764321111222221 12 222223
Q ss_pred -ecCCEEEEEEEcCceEEEEEEecCCCceeeeec
Q psy1288 305 -VANDKLILSYIHHVKNVMHLHDLASGKHLYTFP 337 (1012)
Q Consensus 305 -~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~ 337 (1012)
.+++ +++. . ..|+++++.+++....++
T Consensus 156 s~dg~-l~~~--~---~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 156 ADDGS-LYVA--G---PDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp CTTSC-EEEE--S---SSEEEECTTTCCEEEEEC
T ss_pred CCCCc-EEEc--c---CcEEEEeCCCCceecccc
Confidence 3434 5552 1 128888887776544443
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-05 Score=79.18 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=39.2
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
..|+|++||++|..||+.++.+++++++. .++++++++.||.+...
T Consensus 150 ~~p~l~i~g~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~H~~~~~ 195 (208)
T 3trd_A 150 ASPWLIVQGDQDEVVPFEQVKAFVNQISS----------PVEFVVMSGASHFFHGR 195 (208)
T ss_dssp CSCEEEEEETTCSSSCHHHHHHHHHHSSS----------CCEEEEETTCCSSCTTC
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHccC----------ceEEEEeCCCCCccccc
Confidence 39999999999999999998888776543 46899999999998753
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.6e-05 Score=82.76 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=76.2
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.+|.+... +.+ ...|.||++||...... .|... ...|+ .+|.|+.+|.||.|..... ...
T Consensus 11 ~~g~~l~y~~~-~~G----~~~p~vvllHG~~~~~~--~w~~~-~~~L~-~~~rvia~DlrGhG~S~~~--------~~~ 73 (276)
T 2wj6_A 11 VFDNKLSYIDN-QRD----TDGPAILLLPGWCHDHR--VYKYL-IQELD-ADFRVIVPNWRGHGLSPSE--------VPD 73 (276)
T ss_dssp ETTEEEEEEEC-CCC----CSSCEEEEECCTTCCGG--GGHHH-HHHHT-TTSCEEEECCTTCSSSCCC--------CCC
T ss_pred eCCeEEEEEEe-cCC----CCCCeEEEECCCCCcHH--HHHHH-HHHHh-cCCEEEEeCCCCCCCCCCC--------CCC
Confidence 46777765432 112 12378999999754332 45443 44566 4899999999998864221 112
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-CCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-PDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-p~~f~a~v~~~~ 545 (1012)
.+++++.+.+..+++. ...+++.++|+|+||.+++.++.++ |+++++.|...+
T Consensus 74 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~ 127 (276)
T 2wj6_A 74 FGYQEQVKDALEILDQ--LGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDW 127 (276)
T ss_dssp CCHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESC
T ss_pred CCHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecc
Confidence 2344554444444443 2346899999999999999999998 999998887754
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.4e-05 Score=98.46 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=50.3
Q ss_pred hHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 795 LLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+...||+.+++ +|+.|+||+||.+|..||+.++.++|++|+. ++ +..+++ ++.||+..
T Consensus 444 w~~~s~~~~l~-------~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~~-------~~~l~i-~~~gH~~~ 501 (763)
T 1lns_A 444 WHDRNYLINTD-------KVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GH-------AKHAFL-HRGAHIYM 501 (763)
T ss_dssp HHTTBGGGGGG-------GCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TC-------CEEEEE-ESCSSCCC
T ss_pred hhccChhhHhh-------cCCCCEEEEEECCCCCCChHHHHHHHHhhcc-CC-------CeEEEE-eCCcccCc
Confidence 44678888898 9999999999999999999999999999998 77 777766 57799863
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=90.42 Aligned_cols=57 Identities=19% Similarity=0.115 Sum_probs=46.7
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCCC-CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQY-PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~~-~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
...+..++|..++. ++. .|+||+||++|. |+.++.+++++ .+. +++++++|+.||++
T Consensus 289 ~~~~~~~~~~~~~~-------~i~~~PvLii~G~~D~--~~~~~~~~~~~---~~~-------~~~~~~~~g~gH~~ 346 (367)
T 2hdw_A 289 PLSFMNMPILTYIK-------EISPRPILLIHGERAH--SRYFSETAYAA---AAE-------PKELLIVPGASHVD 346 (367)
T ss_dssp HHHHTTSCSCTTGG-------GGTTSCEEEEEETTCT--THHHHHHHHHH---SCS-------SEEEEEETTCCTTH
T ss_pred HHHhcCCChhHhHH-------hhcCCceEEEecCCCC--CHHHHHHHHHh---CCC-------CeeEEEeCCCCeee
Confidence 34456778888888 898 999999999999 77777777665 444 89999999999974
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.8e-05 Score=88.53 Aligned_cols=111 Identities=10% Similarity=-0.029 Sum_probs=75.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHH-HHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIV-FLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~-~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
...|.||++||..+.. ...|...... ++...|+.|+++|.||.|...... ... ......+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~~--~~~--~~~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQ--ASY--NTRVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCHHH--HHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCchhH--hHh--hHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999986543 2345443333 343349999999999876543111 100 001224567777777765433
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.+++.++|||+||.+++.++.++|+++..++...|
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldp 179 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDP 179 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESC
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecC
Confidence 4678999999999999999999999999999888766
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.7e-06 Score=93.72 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=48.5
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+..+++...+. ++++|+||++|++|..||+.++.+++++++. +++++++|+.||++.
T Consensus 271 ~~~~~~~d~~~~~~-------~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~gH~~~ 330 (346)
T 3fcy_A 271 FTKLGYIDVKNLAK-------RIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS----------KKDIKVYPDYGHEPM 330 (346)
T ss_dssp HHHHGGGCHHHHGG-------GCCSEEEEEEETTCSSSCHHHHHHHHTTCCS----------SEEEEEETTCCSSCC
T ss_pred HHHhCcccHHHHHH-------hcCCCEEEEeeCCCCcCCHHHHHHHHHhcCC----------CcEEEEeCCCCCcCH
Confidence 34445556666677 8889999999999999999888888766543 679999999999987
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0038 Score=71.01 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=129.3
Q ss_pred CCeeeCCEEEEEEEcCCCC-eeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC-----CCCceE
Q psy1288 110 SPQRQGDHYFFFHNTGLQN-HSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS-----SGSDWT 183 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~-~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~-----~G~~~~ 183 (1012)
.|.++++++|- .+.+... ...|.+.|....+...-+.. |.. - .+.+||||++|..+... .|....
T Consensus 79 ~p~~~~~~vyV-~n~~~~~~~~~VsVID~~t~~vv~~I~v------G~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 79 APAPDARRVYI-QDPAHFAAITQQFVIDGSTGRILGMTDG------GFL-P-HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCCCCTTEEEE-EECTTTCSSEEEEEEETTTTEEEEEEEE------CSS-C-EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cCCCCCCEEEE-ECCCcCCCCCeEEEEECCCCEEEEEEEC------CCC-C-ceEECCCCCEEEEEeccccccccCCCCC
Confidence 55578887554 4433111 15788888766543322321 222 2 68999999998766531 122234
Q ss_pred EEEEEECCCCceece-eec-------ceeeeeeEEeeCCCeEEEEecC-CCCCcccCCCCCceEEEEeec----------
Q psy1288 184 SMHFKDVATGKEYPE-VLH-------RLKFVSIAWTHDHKGVFYSNQE-PKSKSKKHSKKNRSSAYHLTV---------- 244 (1012)
Q Consensus 184 ~L~v~dl~tg~~~~~-t~~-------~~~~~~~~WSpDG~~l~y~~~~-~~~~g~~~~~~~~~l~~~~~~---------- 244 (1012)
.|.++|+.+++.... ... ......+.+||||+++|..... .......+... .+++-....
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I~v~g~~~~~p~g 228 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRMLDVPDCYHIFPAS 228 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEEECCSEEEEEEEE
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEEEcCCceeeccCC
Confidence 899999999987542 222 1123578999999998776432 11000001000 011000000
Q ss_pred ------------------cccce----------------eeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcc---cCc
Q psy1288 245 ------------------NVAPI----------------TSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE---SNW 287 (1012)
Q Consensus 245 ------------------~~~~i----------------~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~---~~~ 287 (1012)
....+ ....++++|+++++.+. ...++.+|..+... ..|
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKIFQADLTAEGATFRAPI 304 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEEEEEEECSSCEEECCCE
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcEEEEeccCCceEEeeee
Confidence 00000 00124666777776653 23678888754321 011
Q ss_pred EEeeccC-------CCceeeeeEEecCCEEEEEEEcC-------ceEEEEEEecCCCceeeeecCCceEEEeecccccCc
Q psy1288 288 KTLIEEN-------KDDVLDWATCVANDKLILSYIHH-------VKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYS 353 (1012)
Q Consensus 288 ~~l~~~~-------~~~~~~~~~~~~~~~l~~~~~~~-------g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~ 353 (1012)
. +.... +..........+++++|+..... +...|.++|+.+.+....++.+. ...++.+++|++
T Consensus 305 ~-~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~ 382 (426)
T 3c75_H 305 E-ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAE 382 (426)
T ss_dssp E-SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSS
T ss_pred e-eccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCC
Confidence 1 11000 00000012233556777765321 24689999998888777776542 244678899998
Q ss_pred EEEEEecCCCCCcEEEEEeC
Q psy1288 354 EIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 354 ~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++|+.+.. -..|.++|+
T Consensus 383 ~~lyv~n~~--s~~VsVID~ 400 (426)
T 3c75_H 383 PLLYALSAG--TQTLHIYDA 400 (426)
T ss_dssp CEEEEEETT--TTEEEEEET
T ss_pred EEEEEEcCC--CCeEEEEEC
Confidence 445555532 357999999
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0045 Score=69.74 Aligned_cols=226 Identities=13% Similarity=0.088 Sum_probs=123.8
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|++++....+ +.-.||- . .+.....+. .+...+..+.|+|||++|+.... +| .|+++|+.
T Consensus 117 s~~~~~l~~~~~d---g~i~i~~--~-~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~iwd~~ 179 (425)
T 1r5m_A 117 SHDGNSIVTGVEN---GELRLWN--K-TGALLNVLN------FHRAPIVSVKWNKDGTHIISMDV-EN----VTILWNVI 179 (425)
T ss_dssp CTTSSEEEEEETT---SCEEEEE--T-TSCEEEEEC------CCCSCEEEEEECTTSSEEEEEET-TC----CEEEEETT
T ss_pred cCCCCEEEEEeCC---CeEEEEe--C-CCCeeeecc------CCCccEEEEEECCCCCEEEEEec-CC----eEEEEECC
Confidence 4678877765432 2345553 3 333222222 12345788999999999886543 23 68999999
Q ss_pred CCceecee-eccee---------------eeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeeccccceeeeee
Q psy1288 192 TGKEYPEV-LHRLK---------------FVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVNVAPITSQYI 254 (1012)
Q Consensus 192 tg~~~~~t-~~~~~---------------~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~~~~i~~~~~ 254 (1012)
+++..... ..... ...+.|+||+. ++....++...-. .........+ ......+....|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~---~~~~~~i~~~~~ 255 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKL---IGHHGPISVLEF 255 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEE---CCCSSCEEEEEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeee---ccCCCceEEEEE
Confidence 88765421 11111 56789999875 4444332110000 0000000000 000123344468
Q ss_pred ecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee
Q psy1288 255 TNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334 (1012)
Q Consensus 255 s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~ 334 (1012)
+|+++.|+..+. +..+...++..... ...+ ...... +..+.+..++ +++....+ ..+.+|++.+++...
T Consensus 256 ~~~~~~l~~~~~----d~~i~i~d~~~~~~--~~~~-~~~~~~-i~~~~~~~~~-~l~~~~~d--~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 256 NDTNKLLLSASD----DGTLRIWHGGNGNS--QNCF-YGHSQS-IVSASWVGDD-KVISCSMD--GSVRLWSLKQNTLLA 324 (425)
T ss_dssp ETTTTEEEEEET----TSCEEEECSSSBSC--SEEE-CCCSSC-EEEEEEETTT-EEEEEETT--SEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEcC----CCEEEEEECCCCcc--ceEe-cCCCcc-EEEEEECCCC-EEEEEeCC--CcEEEEECCCCcEeE
Confidence 999997777663 34577777766541 2223 222222 3334444334 44444444 468889997777655
Q ss_pred eecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 335 TFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 335 ~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+......+..+.++|+++.|+..... ..+..+|+
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~ 359 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMD----GQVNVYDL 359 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETT----SCEEEEEC
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECC----CeEEEEEC
Confidence 555545567788899999877765533 35788887
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0019 Score=73.08 Aligned_cols=194 Identities=14% Similarity=0.091 Sum_probs=106.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc-------------------eeeeeeEEeeCCCeEE
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR-------------------LKFVSIAWTHDHKGVF 218 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~-------------------~~~~~~~WSpDG~~l~ 218 (1012)
.+..++|||||++||...+ + .+.++++.+|+........ .....++|+|||+.|+
T Consensus 66 ~V~~v~fspdg~~la~g~~--~----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN--K----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CCCEEEECTTSSEEEEECB--S----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCEEEEEcC--C----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 5678999999999997542 1 5778898888754311110 0146789999999887
Q ss_pred EEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCce
Q psy1288 219 YSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDV 298 (1012)
Q Consensus 219 y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~ 298 (1012)
....+....-. +.. ..+...........+....|+|+|+.|+..+. +..+...|+.+++ ....+... ..+
T Consensus 140 s~~~d~~i~iw-d~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~----d~~v~iwd~~~~~---~~~~~~~~-~~v 209 (393)
T 1erj_A 140 TGAEDRLIRIW-DIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG----DRTVRIWDLRTGQ---CSLTLSIE-DGV 209 (393)
T ss_dssp EEETTSCEEEE-ETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTE---EEEEEECS-SCE
T ss_pred EEcCCCeEEEE-ECC-CCcEEEEEccCCCCEEEEEEcCCCCEEEEecC----CCcEEEEECCCCe---eEEEEEcC-CCc
Confidence 76654211000 000 01111111001123444468999998876654 3457777877654 11122222 222
Q ss_pred eeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecC-------CceEEEeecccccCcEEEEEecCCCCCcEEEEE
Q psy1288 299 LDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPL-------DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~-------~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
........++.+++....++ .+.+|++.+++....+.. ....+..+.++|+++.|+.... -..+..+
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~--~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~w 283 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDR--AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLW 283 (393)
T ss_dssp EEEEECSTTCCEEEEEETTS--CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCC--cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence 22222221233444444443 477889877765444421 1345677889999987764432 2457788
Q ss_pred eC
Q psy1288 372 NI 373 (1012)
Q Consensus 372 d~ 373 (1012)
|+
T Consensus 284 d~ 285 (393)
T 1erj_A 284 NL 285 (393)
T ss_dssp EC
T ss_pred EC
Confidence 87
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.011 Score=64.02 Aligned_cols=232 Identities=7% Similarity=-0.020 Sum_probs=122.5
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|.+++-...+ +.-.|| +...+.....+.. ....+....|+|||++|+-.... ..|+++|++
T Consensus 22 sp~~~~l~s~~~d---g~v~lW--d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~s~d-----~~i~vwd~~ 85 (304)
T 2ynn_A 22 HPTEPWVLTTLYS---GRVELW--NYETQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYN 85 (304)
T ss_dssp CSSSSEEEEEETT---SEEEEE--ETTTTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETT-----SEEEEEETT
T ss_pred CCCCCEEEEEcCC---CcEEEE--ECCCCceeEEeec------cCCcEEEEEEeCCCCEEEEECCC-----CEEEEEECC
Confidence 4788877654322 345566 3333332222221 22346788999999998865432 289999999
Q ss_pred CCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecC-CCEEEEEECCCC
Q psy1288 192 TGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNE-GPQFVFKTNKDA 269 (1012)
Q Consensus 192 tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~d-g~~l~~~tn~~~ 269 (1012)
+++.... .........++|+||++.|+-.+.+....-. +......+..........+....|+|+ +..|+..+.
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lW-d~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~--- 161 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW-NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL--- 161 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE-EGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET---
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEE-ECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC---
Confidence 9886542 2223345789999999977655544211000 000000110000000123344458884 455554442
Q ss_pred CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe--cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeec
Q psy1288 270 PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV--ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFS 347 (1012)
Q Consensus 270 ~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~ 347 (1012)
+..+...|+..... ...+....... +....+. .++.+++....+ ..+.+||+.+++....+......+..+.
T Consensus 162 -D~~v~iwd~~~~~~--~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~s~D--~~i~iWd~~~~~~~~~~~~h~~~v~~~~ 235 (304)
T 2ynn_A 162 -DRTVKVWSLGQSTP--NFTLTTGQERG-VNYVDYYPLPDKPYMITASDD--LTIKIWDYQTKSCVATLEGHMSNVSFAV 235 (304)
T ss_dssp -TSEEEEEETTCSSC--SEEEECCCTTC-EEEEEECCSTTCCEEEEEETT--SEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred -CCeEEEEECCCCCc--cceeccCCcCc-EEEEEEEEcCCCCEEEEEcCC--CeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence 34566677755431 12232222122 2222221 113344444444 3678889977776566655555677788
Q ss_pred ccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 348 GKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 348 ~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++|++..|+-.... ..|..+|+
T Consensus 236 ~~p~~~~l~s~s~D----g~i~iWd~ 257 (304)
T 2ynn_A 236 FHPTLPIIISGSED----GTLKIWNS 257 (304)
T ss_dssp ECSSSSEEEEEETT----SCEEEEET
T ss_pred ECCCCCEEEEEcCC----CeEEEEEC
Confidence 99998865533322 35788888
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00016 Score=82.09 Aligned_cols=211 Identities=13% Similarity=0.094 Sum_probs=111.9
Q ss_pred EeeeEEECCCCcEEEEEEeCCC------CceEEEEEEECCCCce---eceeecceeeeeeEEeeCCCeEEEEecCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSG------SDWTSMHFKDVATGKE---YPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKS 228 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G------~~~~~L~v~dl~tg~~---~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g 228 (1012)
.+..++|||||+.++++.+..| +....|+++|+.+++. ............++|+|||+.|+....++...-
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 5678999999996666664444 3445899999998763 222222334678999999998887765422100
Q ss_pred c-cCC-CCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCccc----CcEEe--eccCCCceee
Q psy1288 229 K-KHS-KKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAES----NWKTL--IEENKDDVLD 300 (1012)
Q Consensus 229 ~-~~~-~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~----~~~~l--~~~~~~~~~~ 300 (1012)
. ... ................+....|+|+++.+++.... +..|...|+.+.... ....+ .... ...+.
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 169 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN---NGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVI 169 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS---SSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCC
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC---CCeEEEEECCCCccccccccccccccccCC-CCCee
Confidence 0 000 00001111111111234444688984444444433 345677777654310 00111 0111 11223
Q ss_pred eeEEecC-CEEEEEEEcCceEEEEEEecCCCceeeeecCC------ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 301 WATCVAN-DKLILSYIHHVKNVMHLHDLASGKHLYTFPLD------VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 301 ~~~~~~~-~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~------~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+.+... ..+++....+ ..|.+|++.+++....+... ...+..+.|+|++..++++.+.......|..+|+
T Consensus 170 ~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSS--NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp EEEECSSCTTEEEEESSS--SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred EEEeCCCCCcEEEEEcCC--CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 3333332 3444444433 35888999777665555543 4557788999998655555444322235778888
Q ss_pred C
Q psy1288 374 P 374 (1012)
Q Consensus 374 ~ 374 (1012)
.
T Consensus 248 ~ 248 (416)
T 2pm9_A 248 R 248 (416)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0025 Score=68.64 Aligned_cols=231 Identities=7% Similarity=-0.042 Sum_probs=125.5
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
++.++|+.+|++-... ..|++.+..++ .+.+..+. .....+.++|||+.++ .+... ..|+++|
T Consensus 34 ~~d~~g~~l~~~~~~~----~~i~~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg~l~v--~~~~~---~~i~~~d 96 (296)
T 3e5z_A 34 VYVPARSAVIFSDVRQ----NRTWAWSDDGQ-LSPEMHPS-------HHQNGHCLNKQGHLIA--CSHGL---RRLERQR 96 (296)
T ss_dssp EEEGGGTEEEEEEGGG----TEEEEEETTSC-EEEEESSC-------SSEEEEEECTTCCEEE--EETTT---TEEEEEC
T ss_pred eEeCCCCEEEEEeCCC----CEEEEEECCCC-eEEEECCC-------CCcceeeECCCCcEEE--EecCC---CeEEEEc
Confidence 3457888888875433 36888887666 55554321 2356789999998543 33221 2799999
Q ss_pred CCCCceeceeec--ce---eeeeeEEeeCCCeEEEEecC-CC---CCcc-cCCC-CCceEEEEeecc--------cccee
Q psy1288 190 VATGKEYPEVLH--RL---KFVSIAWTHDHKGVFYSNQE-PK---SKSK-KHSK-KNRSSAYHLTVN--------VAPIT 250 (1012)
Q Consensus 190 l~tg~~~~~t~~--~~---~~~~~~WSpDG~~l~y~~~~-~~---~~g~-~~~~-~~~~l~~~~~~~--------~~~i~ 250 (1012)
.++|+....... .. ....++++|||+ |+++... .. ..+. .... ....++.....+ .....
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPN 175 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEE
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCc
Confidence 988886543211 11 134689999996 5554210 00 0000 0000 011222211110 01112
Q ss_pred eeeeecCCCEEEEEECCCCCCceEEEEeCC-CCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCC
Q psy1288 251 SQYITNEGPQFVFKTNKDAPNYRLITIDFD-NFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLAS 329 (1012)
Q Consensus 251 ~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~ 329 (1012)
...|+|||+.| +.... ...|++++++ .+....-..++ .........+....++.+++.. ...|.+++.+
T Consensus 176 gi~~s~dg~~l-v~~~~---~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~----~~~v~~~~~~- 245 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDTG---DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA----GDGVHVLTPD- 245 (296)
T ss_dssp EEEECTTSCEE-EEETT---TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE----TTEEEEECTT-
T ss_pred cEEECCCCCEE-EEeCC---CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc----CCeEEEECCC-
Confidence 33589999988 55432 3578888875 22210002333 2212222233343335676665 2468899984
Q ss_pred CceeeeecCCceEEEeecc-cccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 330 GKHLYTFPLDVGTIVGFSG-KKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 330 G~~~~~l~~~~~~v~~~~~-spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
|+....+..+.. +..+.+ +++++.|+++.+. .|+++++.
T Consensus 246 g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~ 285 (296)
T 3e5z_A 246 GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIETN 285 (296)
T ss_dssp SCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEECS
T ss_pred CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEcc
Confidence 776666666644 445556 5888888887653 69999983
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=85.11 Aligned_cols=120 Identities=13% Similarity=0.003 Sum_probs=80.9
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.++.++...++.|.++. .+..+.||++||..+.... .|.......|.++||.|+.+|+||.+.... .
T Consensus 11 ~~~~~l~~~i~~p~~~~-~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~~-----------~ 77 (317)
T 1tca_A 11 QPKSVLDAGLTCQGASP-SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLNDT-----------Q 77 (317)
T ss_dssp SCHHHHHHTEEETTBCT-TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSCH-----------H
T ss_pred CCHHHHhheeeCCCCCC-CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCcH-----------H
Confidence 34556666677776653 2345678999997654321 143234567777799999999998653211 1
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC---CceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP---DLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~ 545 (1012)
...+++.+.++++.+.. ..+++.++|||+||.++..++...| +.++++|...+
T Consensus 78 ~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~ 133 (317)
T 1tca_A 78 VNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133 (317)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECC
Confidence 12356666677776642 2478999999999999988877665 77888888876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.78 E-value=0.002 Score=71.45 Aligned_cols=190 Identities=9% Similarity=0.078 Sum_probs=106.1
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc--eec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK--EYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~--~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
.+..++|||||++|+.... + ..|+++|+++++ ... ..........++|+|||+.|+....+..
T Consensus 10 ~i~~~~~s~~~~~l~~~~~-d----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~--------- 75 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPN-N----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN--------- 75 (372)
T ss_dssp CCCEEEECTTSSEEEEECS-S----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC---------
T ss_pred CeEEEEECCCCCEEEEEeC-C----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe---------
Confidence 4778999999999987643 2 279999998886 322 2223334678999999998877664421
Q ss_pred CceEEEEee----------ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccC-cEEeeccCCCceeeeeE
Q psy1288 235 NRSSAYHLT----------VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESN-WKTLIEENKDDVLDWAT 303 (1012)
Q Consensus 235 ~~~l~~~~~----------~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~-~~~l~~~~~~~~~~~~~ 303 (1012)
-.++-... .....+....|+|+++.|+..+.. ..+...++....... ...+.... ...+..+.
T Consensus 76 -i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~ 149 (372)
T 1k8k_C 76 -AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKHIKKPI-RSTVLSLD 149 (372)
T ss_dssp -EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEEEEEEECTTC-CSCEEEEE
T ss_pred -EEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CEEEEEEecCCCcceeeeeeeccc-CCCeeEEE
Confidence 11111100 001234445689999988887743 234444444332100 11121211 22233344
Q ss_pred EecCCEEEEEEEcCceEEEEEEecC------------------CCceeeeecCCceEEEeecccccCcEEEEEecCCCCC
Q psy1288 304 CVANDKLILSYIHHVKNVMHLHDLA------------------SGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQP 365 (1012)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~l~~~dl~------------------~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p 365 (1012)
+..++.+++....++ .+.+|++. .++....+......+..+.++|+++.|+.....
T Consensus 150 ~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 223 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDF--KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD---- 223 (372)
T ss_dssp ECTTSSEEEEEETTS--CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred EcCCCCEEEEEcCCC--CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC----
Confidence 433233334444443 46677742 344444444334557788899999877665432
Q ss_pred cEEEEEeC
Q psy1288 366 TIIFHCNI 373 (1012)
Q Consensus 366 ~~l~~~d~ 373 (1012)
..+..+|+
T Consensus 224 ~~i~i~d~ 231 (372)
T 1k8k_C 224 STVCLADA 231 (372)
T ss_dssp TEEEEEEG
T ss_pred CEEEEEEC
Confidence 46888998
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.006 Score=68.93 Aligned_cols=232 Identities=11% Similarity=0.100 Sum_probs=126.4
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
+.++.++-...++ .|++-+..++....++... +...+..++|||||++|+..... | .|.++|+++
T Consensus 101 ~s~~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~d-g----~i~iwd~~~ 165 (401)
T 4aez_A 101 WSNLNVVAVALER-----NVYVWNADSGSVSALAETD-----ESTYVASVKWSHDGSFLSVGLGN-G----LVDIYDVES 165 (401)
T ss_dssp ECTTSEEEEEETT-----EEEEEETTTCCEEEEEECC-----TTCCEEEEEECTTSSEEEEEETT-S----CEEEEETTT
T ss_pred ecCCCEEEEECCC-----eEEEeeCCCCcEeEeeecC-----CCCCEEEEEECCCCCEEEEECCC-C----eEEEEECcC
Confidence 4455554443322 3455555556555554421 23457889999999999876543 3 689999998
Q ss_pred Cceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCC
Q psy1288 193 GKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPN 271 (1012)
Q Consensus 193 g~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~ 271 (1012)
++..... ........+.| +++.|+....++...-. +.................+....|+|++..|+..+..
T Consensus 166 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---- 238 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH-DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND---- 238 (401)
T ss_dssp CCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE-ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred CeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEE-ecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC----
Confidence 8765422 22334567888 56666555443210000 0000000000000011234444689999888877643
Q ss_pred ceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccc
Q psy1288 272 YRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKK 350 (1012)
Q Consensus 272 ~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~sp 350 (1012)
..+...|+.+... ...+..+ .. .+..+.+. ++..+++.........|.+|++.+++....+.. ...+..+.|+|
T Consensus 239 ~~v~iwd~~~~~~--~~~~~~~-~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~ 313 (401)
T 4aez_A 239 NVVQIWDARSSIP--KFTKTNH-NA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSP 313 (401)
T ss_dssp SCEEEEETTCSSE--EEEECCC-SS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEECS
T ss_pred CeEEEccCCCCCc--cEEecCC-cc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEECC
Confidence 4577778876541 1222222 22 23333333 334555544321235788999987776555543 34467888999
Q ss_pred cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 351 KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 351 dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++.++..... ....+..+|+
T Consensus 314 ~~~~l~~~~g~--~dg~i~v~~~ 334 (401)
T 4aez_A 314 HSKEIMSTHGF--PDNNLSIWSY 334 (401)
T ss_dssp SSSEEEEEECT--TTCEEEEEEE
T ss_pred CCCeEEEEeec--CCCcEEEEec
Confidence 99987765422 2346778887
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0011 Score=73.90 Aligned_cols=204 Identities=13% Similarity=0.093 Sum_probs=106.6
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCc-eEEEEEEECCCCceecee-----ecceeeeeeEEeeCCCeEEEEecCCCCCcc
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSD-WTSMHFKDVATGKEYPEV-----LHRLKFVSIAWTHDHKGVFYSNQEPKSKSK 229 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~-~~~L~v~dl~tg~~~~~t-----~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~ 229 (1012)
...+..++|||||++||=.......- ...|++++..+++..... ........++|+||++.| ..+.++...-.
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lW 120 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELW 120 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEe
Confidence 34688999999999998765433221 247999998887653211 112235789999998644 34433210000
Q ss_pred -cCCCCCc-eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ec
Q psy1288 230 -KHSKKNR-SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VA 306 (1012)
Q Consensus 230 -~~~~~~~-~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 306 (1012)
...++.. ...+........+....|+|+|+.|+..+.. ..+...|+.+++ ....+...... +..+.+ .+
T Consensus 121 d~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d----g~v~iwd~~~~~---~~~~~~~h~~~-v~~v~~s~~ 192 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD----FSVKVWDLSQKA---VLKSYNAHSSE-VNCVAACPG 192 (357)
T ss_dssp --------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT----SCEEEEETTTTE---EEEEECCCSSC-EEEEEECTT
T ss_pred eccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC----CeEEEEECCCCc---EEEEEcCCCCC-EEEEEEccC
Confidence 0000000 0000000000234444689999988776643 346667776654 12222222222 333333 33
Q ss_pred CCEEEEEEEcCceEEEEEEecCCCceeeeecCC--ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 307 NDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD--VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 307 ~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~--~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++.+++....++ .+.+||+.+++....+... ...+..+.|+|++..++++.+. -..|..+|+
T Consensus 193 ~~~~~~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~wd~ 256 (357)
T 4g56_B 193 KDTIFLSCGEDG--RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLVNI 256 (357)
T ss_dssp CSSCEEEEETTS--CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEEES
T ss_pred CCceeeeeccCC--ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec---ccceeEEEC
Confidence 344555555543 4778898777654444332 3446677889987655544332 235788888
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0022 Score=79.77 Aligned_cols=197 Identities=8% Similarity=0.004 Sum_probs=112.4
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..++|||||++||.+.. +| .|.++|+.+|+... ..........++|+|||+.|+....++...-. +....
T Consensus 14 ~~v~~i~~sp~~~~la~~~~-~g----~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw-~~~~~ 87 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLY-SG----RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF-NYNTG 87 (814)
T ss_dssp SCEEEEEECSSSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE-ETTTC
T ss_pred CceEEEEECCCCCEEEEEeC-CC----EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE-ECCCC
Confidence 35788999999999998763 22 79999999987654 23233446889999999999887654210000 00000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEec-CCEEEEEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVA-NDKLILSY 314 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~ 314 (1012)
. ...........+....|+|+|+.|+..+. +..+...++.+.. .....+......+ ..+.+.. ++.+++..
T Consensus 88 ~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~vw~~~~~~--~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 88 E-KVVDFEAHPDYIRSIAVHPTKPYVLSGSD----DLTVKLWNWENNW--ALEQTFEGHEHFV-MCVAFNPKDPSTFASG 159 (814)
T ss_dssp C-EEEEEECCSSCEEEEEECSSSSEEEEEET----TSEEEEEEGGGTS--EEEEEEECCSSCE-EEEEEETTEEEEEEEE
T ss_pred c-EEEEEecCCCCEEEEEEeCCCCEEEEEcC----CCEEEEEECCCCc--eEEEEEcCCCCcE-EEEEEEcCCCCEEEEE
Confidence 0 11100111133445569999998887664 3456677765542 1222333222333 3333332 24444444
Q ss_pred EcCceEEEEEEecCCCceeeeecCC-ceEEEeecccc--cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKK--KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~sp--dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+ ..+.+|++.+++....+... ...+..+.|+| ++..++..... ..+..+|+
T Consensus 160 ~~d--g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~~~d~ 215 (814)
T 3mkq_A 160 CLD--RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----LTIKIWDY 215 (814)
T ss_dssp ETT--SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT----SEEEEEET
T ss_pred eCC--CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC----CEEEEEEC
Confidence 444 36788898666554444433 23344556676 77766655432 46888898
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.7e-05 Score=83.98 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=47.9
Q ss_pred hHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 793 EYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 793 ~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+............ ++..|+|++||++|..||..++.+++..++.. .+.++++++.||.+..+
T Consensus 191 ~~~~~~~~~~~~~-------~~~~P~l~i~g~~D~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~gH~~~~~ 252 (270)
T 3llc_A 191 EDGRANRVMAGMI-------DTGCPVHILQGMADPDVPYQHALKLVEHLPAD---------DVVLTLVRDGDHRLSRP 252 (270)
T ss_dssp HHHHHTCCTTSCC-------CCCSCEEEEEETTCSSSCHHHHHHHHHTSCSS---------SEEEEEETTCCSSCCSH
T ss_pred hhhhhhhhhhhhh-------cCCCCEEEEecCCCCCCCHHHHHHHHHhcCCC---------CeeEEEeCCCccccccc
Confidence 3344444455566 77899999999999999999888887766442 58999999999987654
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00025 Score=80.72 Aligned_cols=119 Identities=15% Similarity=0.068 Sum_probs=78.6
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHh------CCeEEEEEcCCCCCCCchhHHhhhh
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRD------FNGIYAIPNIRGGGEYGERWHDGGR 485 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~------~G~~v~~~d~RG~g~~g~~~~~~~~ 485 (1012)
||.+|.+....+.. ...+.||++||.++... .|... ...|.+ .||.|+++|.+|.|.....
T Consensus 93 ~g~~i~~~~~~~~~----~~~~pllllHG~~~s~~--~~~~~-~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~------ 159 (408)
T 3g02_A 93 EGLTIHFAALFSER----EDAVPIALLHGWPGSFV--EFYPI-LQLFREEYTPETLPFHLVVPSLPGYTFSSGP------ 159 (408)
T ss_dssp TTEEEEEEEECCSC----TTCEEEEEECCSSCCGG--GGHHH-HHHHHHHCCTTTCCEEEEEECCTTSTTSCCS------
T ss_pred CCEEEEEEEecCCC----CCCCeEEEECCCCCcHH--HHHHH-HHHHhcccccccCceEEEEECCCCCCCCCCC------
Confidence 89999887765432 34567899999876443 34433 344544 4899999999998754221
Q ss_pred cCCCcchHhHHHHHHHHHHHcCCCCCC-cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASGYTQSS-RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~~~d~~-~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......++++...+..+++. ...+ ++.++|+|+||.++..++.++|++....+...+
T Consensus 160 ~~~~~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~ 218 (408)
T 3g02_A 160 PLDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCN 218 (408)
T ss_dssp CSSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCC
Confidence 001123355666555555554 2334 899999999999999999998886666555433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0017 Score=77.70 Aligned_cols=199 Identities=9% Similarity=-0.049 Sum_probs=115.7
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCC----ceec-eeeccee-eeeeEEee--CCCeEEEEecCCCCCc
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATG----KEYP-EVLHRLK-FVSIAWTH--DHKGVFYSNQEPKSKS 228 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg----~~~~-~t~~~~~-~~~~~WSp--DG~~l~y~~~~~~~~g 228 (1012)
..+..++|||||++||+.. ++ .|.++|++++ +... +...... ...++|+| ||+.|+....++...-
T Consensus 19 ~~v~~~~~spdg~~l~~~~--~~----~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC--GK----SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE--TT----EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CceeEEEECCCCCEEEEec--CC----eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 3577899999999999987 22 7999999987 4433 3323344 67899999 9998877664421000
Q ss_pred c-cCCC-C----CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeee
Q psy1288 229 K-KHSK-K----NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWA 302 (1012)
Q Consensus 229 ~-~~~~-~----~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~ 302 (1012)
. ...+ . ...+..........+....|+|+|+.|+...........++..+.... ...+. .....+ ..+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~----~~~~~-~~~~~v-~~~ 166 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS----LGEVS-GHSQRI-NAC 166 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE----EEECC-SCSSCE-EEE
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCc----ceeee-cCCccE-EEE
Confidence 0 0000 0 000100000011334455699999999888865444466777663221 12222 222223 333
Q ss_pred EE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCce---EEEeeccccc-CcEEEEEecCCCCCcEEEEEeC
Q psy1288 303 TC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVG---TIVGFSGKKK-YSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 303 ~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~---~v~~~~~spd-g~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+ .+++.+++....+ ..+.+|++.+++....+..... .+..+.++|+ ++.++..... ..+..+|+
T Consensus 167 ~~~~~~~~~l~~~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~ 236 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDD--GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD----RKISCFDG 236 (615)
T ss_dssp EECSSSSCEEEEEETT--TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT----CCEEEEET
T ss_pred EECCCCCcEEEEEeCC--CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC----CeEEEEEC
Confidence 33 3333344544444 4677889877766556654444 6778899999 8776655432 35888998
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0098 Score=64.98 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=126.5
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
++|. +|+.-... ..|++.+..+++.+.++.. ....+..+.++|||+.++... ..+.....|+++|.++
T Consensus 54 ~~g~-l~~~~~~~----~~i~~~d~~~~~~~~~~~~------~~~~~~~i~~~~dg~l~v~~~-~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 54 RQGQ-LFLLDVFE----GNIFKINPETKEIKRPFVS------HKANPAAIKIHKDGRLFVCYL-GDFKSTGGIFAATENG 121 (333)
T ss_dssp TTSC-EEEEETTT----CEEEEECTTTCCEEEEEEC------SSSSEEEEEECTTSCEEEEEC-TTSSSCCEEEEECTTS
T ss_pred CCCC-EEEEECCC----CEEEEEeCCCCcEEEEeeC------CCCCcceEEECCCCcEEEEeC-CCCCCCceEEEEeCCC
Confidence 5665 55543222 4688888777776665421 112467889999998655432 2211224799999998
Q ss_pred Cceeceee---cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec---------cccceeeeeeecCCCE
Q psy1288 193 GKEYPEVL---HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV---------NVAPITSQYITNEGPQ 260 (1012)
Q Consensus 193 g~~~~~t~---~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~---------~~~~i~~~~~s~dg~~ 260 (1012)
++...... .......+.++|||+ |+++...... ......++..... .........|++||+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYS-----TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKV 195 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBT-----TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSE
T ss_pred CEEEEEEccCccCCcccceEECCCCC-EEEEeccccc-----cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCE
Confidence 87642211 122346789999996 5555432100 0000111111100 0011223358999999
Q ss_pred EEEEECCCCCCceEEEEeCCC-CcccCcE----Eeecc-CCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee
Q psy1288 261 FVFKTNKDAPNYRLITIDFDN-FAESNWK----TLIEE-NKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334 (1012)
Q Consensus 261 l~~~tn~~~~~~~L~~~dl~~-~~~~~~~----~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~ 334 (1012)
||+.... ...|++++++. +. ... .+... ........+....++.+++....+ ..|++++. +|+...
T Consensus 196 l~v~~~~---~~~i~~~d~~~~g~--~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~--~~v~~~d~-~g~~~~ 267 (333)
T 2dg1_A 196 LWVTETT---ANRLHRIALEDDGV--TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ--GRVLVFNK-RGYPIG 267 (333)
T ss_dssp EEEEEGG---GTEEEEEEECTTSS--SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT--TEEEEECT-TSCEEE
T ss_pred EEEEeCC---CCeEEEEEecCCCc--CcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC--CEEEEECC-CCCEEE
Confidence 9887643 34688888753 21 111 11111 111223334443334566655433 36888888 566555
Q ss_pred eecCCce------EEEeecccccCcEEEEEecCCC--CCcEEEEEeC
Q psy1288 335 TFPLDVG------TIVGFSGKKKYSEIFYSFMSFL--QPTIIFHCNI 373 (1012)
Q Consensus 335 ~l~~~~~------~v~~~~~spdg~~l~~~~ss~~--~p~~l~~~d~ 373 (1012)
.+..+.. .+..+.+++|++.|+++.+... ....||++++
T Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 268 QILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp EEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred EEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 5554421 3445677889888988776532 3457899887
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0018 Score=71.83 Aligned_cols=198 Identities=10% Similarity=-0.033 Sum_probs=109.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEecC-CCCCcc-cCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQE-PKSKSK-KHSK 233 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~-~~~~g~-~~~~ 233 (1012)
..+..++|||||++|+-... +| .|.++|+++++...... .......+.|+||++.++.+... ....-. ....
T Consensus 128 ~~V~~v~~spdg~~l~sgs~-d~----~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSK-DI----CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202 (344)
T ss_dssp SCEEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred CCEEEEEECCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence 45788999999999876543 23 69999999998764322 22345788999999877666432 110000 0000
Q ss_pred CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEE
Q psy1288 234 KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLIL 312 (1012)
Q Consensus 234 ~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~ 312 (1012)
.....+. .......+....|+|+++.+++.... +..|...|+.+++. ...+..+. ..+ ..+.+ .++..+++
T Consensus 203 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~l~sg~~---dg~v~~wd~~~~~~--~~~~~~h~-~~v-~~v~fsp~g~~~la 274 (344)
T 4gqb_B 203 KPASQIG-CSAPGYLPTSLAWHPQQSEVFVFGDE---NGTVSLVDTKSTSC--VLSSAVHS-QCV-TGLVFSPHSVPFLA 274 (344)
T ss_dssp SCEEECC-----CCCEEEEEECSSCTTEEEEEET---TSEEEEEESCC--C--CEEEECCS-SCE-EEEEECSSSSCCEE
T ss_pred ceeeeee-cceeeccceeeeecCCCCcceEEecc---CCcEEEEECCCCcE--EEEEcCCC-CCE-EEEEEccCCCeEEE
Confidence 0000000 00000112233578877766665433 34677778876541 23333332 223 33333 34445555
Q ss_pred EEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 313 ~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+...++ .|.+||+.+++.. .+......|..++|+|+++.++.+.+.. ..|..+++
T Consensus 275 sgs~D~--~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D---~~v~~w~v 329 (344)
T 4gqb_B 275 SLSEDC--SLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWD---HQVVHHVV 329 (344)
T ss_dssp EEETTS--CEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETT---SCEEEEEC
T ss_pred EEeCCC--eEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCC---CeEEEEEC
Confidence 555544 4778898766543 3333355677889999998877665432 24666776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0089 Score=67.40 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=110.4
Q ss_pred ceEeeeEEECC-CCcEEEEEEeCCCCceEEEEEEECCCCce-------ec-eeecceeeeeeEEeeCCCeEEEEe-cCCC
Q psy1288 156 TVSLGSYSFSE-DGKTLAYCLSSSGSDWTSMHFKDVATGKE-------YP-EVLHRLKFVSIAWTHDHKGVFYSN-QEPK 225 (1012)
Q Consensus 156 ~~~i~~~~~SP-DGk~iAy~~~~~G~~~~~L~v~dl~tg~~-------~~-~t~~~~~~~~~~WSpDG~~l~y~~-~~~~ 225 (1012)
...+..++||| |+++|+-.. .+| .|.++|+.++.. .. +.........++|+|||+.++++. .+..
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s-~dg----~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGS-EDC----TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEE-TTS----EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred CCCEEEEEeCCCCCCEEEEEe-CCC----eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 34688999999 888777654 333 799999988742 11 222233467899999996555554 3321
Q ss_pred CCcccCCCCCceEEEEe--eccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeE
Q psy1288 226 SKSKKHSKKNRSSAYHL--TVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWAT 303 (1012)
Q Consensus 226 ~~g~~~~~~~~~l~~~~--~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~ 303 (1012)
..-. +.... +..... ......+....|+|+|+.|+..+. +..|...|+.+++. ...+.............
T Consensus 156 i~iw-d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 156 ILVW-DVGTG-AAVLTLGPDVHPDTIYSVDWSRDGALICTSCR----DKRVRVIEPRKGTV--VAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp EEEE-ETTTT-EEEEEECTTTCCSCEEEEEECTTSSCEEEEET----TSEEEEEETTTTEE--EEEEECSSCSSSCCEEE
T ss_pred EEEE-ECCCC-CccEEEecCCCCCceEEEEECCCCCEEEEEec----CCcEEEEeCCCCce--eeeeccCCCCCcceEEE
Confidence 0000 00001 111111 001133445568999998887764 35688888876541 12221222222122223
Q ss_pred EecCCEEEEE-EEcCceEEEEEEecCCCce-eeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 304 CVANDKLILS-YIHHVKNVMHLHDLASGKH-LYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 304 ~~~~~~l~~~-~~~~g~~~l~~~dl~~G~~-~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+..++.+++. ........|.+|++.+++. ......+ ...+..+.++|+++.+++..+.. ..|..+|+
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d---g~i~i~d~ 297 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD---SSIRYFEI 297 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC---SCEEEEEE
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC---CeEEEEEe
Confidence 3332444443 3323457899999976543 2222222 33355678899999887765432 35777887
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.1e-06 Score=94.73 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=43.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHH---HHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATL---QEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+|++|+||+.|.+++..++.+|+++| +++|+ ++.+.++|+++|+..
T Consensus 209 ~~~~~~~l~~G~~D~~~~~~~~~~~~~~L~~~~~~g~-------~~~~~~~~g~~H~~~ 260 (275)
T 2qm0_A 209 KFETGVFLTVGSLEREHMVVGANELSERLLQVNHDKL-------KFKFYEAEGENHASV 260 (275)
T ss_dssp SSCEEEEEEEETTSCHHHHHHHHHHHHHHHHCCCTTE-------EEEEEEETTCCTTTH
T ss_pred CCCceEEEEeCCcccchhhHHHHHHHHHHHhcccCCc-------eEEEEECCCCCcccc
Confidence 45589999999999999999999999999 56777 999999999999754
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.1e-05 Score=86.84 Aligned_cols=111 Identities=9% Similarity=-0.079 Sum_probs=74.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHh-CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRD-FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
...|+||++||..+.. ...|.......+.+ .|+.|+++|.||.|...... ... ......+|+.+.+++|.+...
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~~--~~~--~~~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAEYTQ--AVQ--NIRIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSCHHH--HHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccccHH--HHH--hHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999976533 23454423333433 39999999999876543111 110 001223466666777765433
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.+++.++|||+||.+++.++.++|+++..++...|
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldp 179 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDP 179 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccc
Confidence 4578999999999999999999999999998888766
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=82.90 Aligned_cols=49 Identities=20% Similarity=0.046 Sum_probs=43.1
Q ss_pred CCCCceEEEcccCCCCCCCcc-hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+||+||++|..||+.+ +.++++.|+. +. +++++++++.||.+..
T Consensus 164 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~-~~-------~~~~~~~~~~~H~~~~ 213 (262)
T 1jfr_A 164 ELRTPTLVVGADGDTVAPVATHSKPFYESLPG-SL-------DKAYLELRGASHFTPN 213 (262)
T ss_dssp TCCSCEEEEEETTCSSSCTTTTHHHHHHHSCT-TS-------CEEEEEETTCCTTGGG
T ss_pred ccCCCEEEEecCccccCCchhhHHHHHHHhhc-CC-------CceEEEeCCCCcCCcc
Confidence 566999999999999999998 9999999853 45 8899999999999754
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=97.71 E-value=7.6e-06 Score=88.42 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=41.0
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+|+.|+||+||++|..||+.++++++++|+.. .++++++|+.||.+.
T Consensus 216 ~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~---------~~~l~~~~~~gH~~~ 262 (281)
T 4fbl_A 216 RVKCPALIIQSREDHVVPPHNGELIYNGIGST---------EKELLWLENSYHVAT 262 (281)
T ss_dssp GCCSCEEEEEESSCSSSCTHHHHHHHHHCCCS---------SEEEEEESSCCSCGG
T ss_pred ccCCCEEEEEeCCCCCcCHHHHHHHHHhCCCC---------CcEEEEECCCCCcCc
Confidence 56699999999999999999999998877532 679999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0014 Score=72.71 Aligned_cols=189 Identities=11% Similarity=0.063 Sum_probs=98.1
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eee---cceeeeeeEEeeCCCeEEEEecCCCCCcc-cCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVL---HRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHS 232 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~---~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~ 232 (1012)
.+..++|||||++||-... +| .|+++|+++++... ... .......++|+|||+.|+-.+.+....-. ...
T Consensus 18 ~v~~l~~sp~g~~las~~~-D~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG-DR----RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp CEEEEEECTTSSCEEEEET-TS----CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEcC-CC----eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 4667899999999986543 22 68888988876432 111 12235789999999988776654221000 000
Q ss_pred CCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEE
Q psy1288 233 KKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLIL 312 (1012)
Q Consensus 233 ~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 312 (1012)
.....+.........+....|+|+|+.|+..+.. ..+...|+...........+...... +..+.+..++.+++
T Consensus 93 -~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 93 -DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD----KSVWVWEVDEEDEYECVSVLNSHTQD-VKHVVWHPSQELLA 166 (345)
T ss_dssp -C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEEECTTSCEEEEEEECCCCSC-EEEEEECSSSSCEE
T ss_pred -CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC----CeEEEEECCCCCCeEEEEEecCcCCC-eEEEEECCCCCEEE
Confidence 0000110000011234455699999987776643 33555555443211111122222222 23333332233444
Q ss_pred EEEcCceEEEEEEecCCCcee--eeecCCceEEEeecccccCcEEEEEe
Q psy1288 313 SYIHHVKNVMHLHDLASGKHL--YTFPLDVGTIVGFSGKKKYSEIFYSF 359 (1012)
Q Consensus 313 ~~~~~g~~~l~~~dl~~G~~~--~~l~~~~~~v~~~~~spdg~~l~~~~ 359 (1012)
....++ .+.+|+..+++.. ..+......+..+.|+|+++.|+...
T Consensus 167 s~s~d~--~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 167 SASYDD--TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp EEETTS--CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeCCC--cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe
Confidence 444454 3556666545432 23333345677889999998766443
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00032 Score=75.89 Aligned_cols=118 Identities=10% Similarity=0.023 Sum_probs=74.0
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
.+|.++.+... +..|.||++||.+.... .|... ...|. .+|.|+.+|.||.|.....- .......
T Consensus 12 ~~~~~~~~~~~--------g~g~~~vllHG~~~~~~--~w~~~-~~~l~-~~~~vi~~Dl~G~G~s~~~~---~~~~~~~ 76 (291)
T 3qyj_A 12 TTEARINLVKA--------GHGAPLLLLHGYPQTHV--MWHKI-APLLA-NNFTVVATDLRGYGDSSRPA---SVPHHIN 76 (291)
T ss_dssp CSSCEEEEEEE--------CCSSEEEEECCTTCCGG--GGTTT-HHHHT-TTSEEEEECCTTSTTSCCCC---CCGGGGG
T ss_pred cCCeEEEEEEc--------CCCCeEEEECCCCCCHH--HHHHH-HHHHh-CCCEEEEEcCCCCCCCCCCC---CCccccc
Confidence 46777776532 23467889999865443 34433 45566 49999999999987542210 0000001
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...+++...+..+++. ...+++.++|||+||.++..++.++|++++..+....
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (291)
T 3qyj_A 77 YSKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129 (291)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence 1233333333333332 1235799999999999999999999999998887654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0068 Score=66.81 Aligned_cols=197 Identities=12% Similarity=0.048 Sum_probs=108.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCC-
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSK- 233 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~- 233 (1012)
..+..+.|||||++|+-.. .+| .|.++|+.+++.... .........++|+|||+.|+....+....-. ....
T Consensus 56 ~~v~~~~~s~d~~~l~s~s-~Dg----~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSAS-QDG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTT----EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred CceEEEEECCCCCEEEEEe-CCC----cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 4577899999999887543 333 799999998876432 2223335678999999988766544210000 0000
Q ss_pred CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEE
Q psy1288 234 KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313 (1012)
Q Consensus 234 ~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 313 (1012)
....+..........+....|++++. ++..+. ...+...|+.++. ....+......+ ..+.+..++.++++
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~----d~~i~~wd~~~~~---~~~~~~~h~~~v-~~~~~~~~~~~l~s 201 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSG----DTTCALWDIETGQ---QTTTFTGHTGDV-MSLSLAPDTRLFVS 201 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEET----TSCEEEEETTTTE---EEEEECCCSSCE-EEEEECTTSSEEEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEEC----CCcEEEEECCCCc---EEEEEcCCCCce-EEEEECCCCCEEEE
Confidence 00111111000012233334666653 444432 3456677776654 122222222223 33333332444555
Q ss_pred EEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 314 YIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 314 ~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...++ .+.+||+.+++....+......+..+.++|+++.++..... ..+..+|+
T Consensus 202 g~~d~--~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d----~~v~iwd~ 255 (340)
T 1got_B 202 GACDA--SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD----ATCRLFDL 255 (340)
T ss_dssp EETTS--CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred EeCCC--cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC----CcEEEEEC
Confidence 44443 57788987776655565445567788899999876654432 35788888
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00054 Score=77.56 Aligned_cols=240 Identities=13% Similarity=0.106 Sum_probs=122.1
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCC--CceEEEcCCCCCCCCCceEeeeEEECCC-CcEEEEEEeCCCCceEEEEEE
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLD--GEARVFLDPNNLSDDGTVSLGSYSFSED-GKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~--g~~~~L~D~n~la~~g~~~i~~~~~SPD-Gk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+|+|.+++....+ +.-.||-..... ......+. .+...+..+.|||| +++|+ +...+| .|+++
T Consensus 76 s~~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~-s~~~dg----~v~iw 141 (416)
T 2pm9_A 76 SHNNKIIAGALDN---GSLELYSTNEANNAINSMARFS------NHSSSVKTVKFNAKQDNVLA-SGGNNG----EIFIW 141 (416)
T ss_dssp CSSSSCEEEEESS---SCEEEECCSSTTSCCCEEEECC------CSSSCCCEEEECSSSTTBEE-EECSSS----CEEBC
T ss_pred CCCCCeEEEEccC---CeEEEeecccccccccchhhcc------CCccceEEEEEcCCCCCEEE-EEcCCC----eEEEE
Confidence 4778877665433 245566443311 11222221 12345788999999 55554 444444 69999
Q ss_pred ECCCCc------eec-e---eecceeeeeeEEeeCCCeEEEEe-cCCCCCcccCCCCCceEEEEeecc------ccceee
Q psy1288 189 DVATGK------EYP-E---VLHRLKFVSIAWTHDHKGVFYSN-QEPKSKSKKHSKKNRSSAYHLTVN------VAPITS 251 (1012)
Q Consensus 189 dl~tg~------~~~-~---t~~~~~~~~~~WSpDG~~l~y~~-~~~~~~g~~~~~~~~~l~~~~~~~------~~~i~~ 251 (1012)
|+.+++ ... . .........++|+||+..++++. .+....- -+... .+........ ...+..
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i-wd~~~-~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI-WDLKA-KKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE-EETTT-TEEEEEECCCCCSSCCCCCEEE
T ss_pred ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE-EECCC-CCcceEEeccccccccCCceEE
Confidence 998876 211 1 11223357899999955555553 3211000 00000 0111111110 123444
Q ss_pred eeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEec-CCEEEEEEEcCceEEEEEEecCCC
Q psy1288 252 QYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVA-NDKLILSYIHHVKNVMHLHDLASG 330 (1012)
Q Consensus 252 ~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~l~~~dl~~G 330 (1012)
..|+|++..+++....+.....|...|+..... ....+...... .+..+.+.. ++.+++....+ ..|.+|++.++
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d--g~v~~wd~~~~ 295 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRD--NTVLLWNPESA 295 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSS-CEEEEEECSSCSSCEEEEESS--SEEEEECSSSC
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccC-ceeEEEeCCCCCCeEEEEeCC--CCEEEeeCCCC
Confidence 568999865555554433233567777765421 11222101222 233333332 24444444444 35888999877
Q ss_pred ceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 331 KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 331 ~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
+....+......+..+.|+|++..++++.+. -..+..+|+.
T Consensus 296 ~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~ 336 (416)
T 2pm9_A 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQ 336 (416)
T ss_dssp CEEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESC
T ss_pred ccceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEcc
Confidence 7666665544556677899998444444433 2467888883
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0021 Score=72.51 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=105.9
Q ss_pred EeeeEEECCCCc-EEEEEEeCCCCceEEEEEEEC----CCCc------eec-eee----------cceeeeeeEEeeCCC
Q psy1288 158 SLGSYSFSEDGK-TLAYCLSSSGSDWTSMHFKDV----ATGK------EYP-EVL----------HRLKFVSIAWTHDHK 215 (1012)
Q Consensus 158 ~i~~~~~SPDGk-~iAy~~~~~G~~~~~L~v~dl----~tg~------~~~-~t~----------~~~~~~~~~WSpDG~ 215 (1012)
.+..++|||||+ +||.... +| .|.++|+ .+++ ... ... .......++|+|||+
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEK-NS----VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp CCSEEEECSSCTTEEEEEET-BT----EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred ceEEEEECCCCCcEEEEecC-Cc----eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 467899999999 8876543 22 7888898 8877 221 111 122467899999999
Q ss_pred eEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC
Q psy1288 216 GVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK 295 (1012)
Q Consensus 216 ~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~ 295 (1012)
.|+....++...-. +. ..............+....|+|+++.|+..+. ...+...++.++.. ...+.....
T Consensus 122 ~l~~~~~dg~i~i~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~~~~ 192 (425)
T 1r5m_A 122 SIVTGVENGELRLW-NK--TGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTILWNVISGTV--MQHFELKET 192 (425)
T ss_dssp EEEEEETTSCEEEE-ET--TSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEEEEETTTTEE--EEEECCC--
T ss_pred EEEEEeCCCeEEEE-eC--CCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEEEEECCCCcE--EEEeecccc
Confidence 88877654210000 00 00000000001123444568999998887764 34567777765431 111111111
Q ss_pred C-------------ceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCC
Q psy1288 296 D-------------DVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 296 ~-------------~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~ 362 (1012)
. ..+..+.+..++.+++.. .+ ..|++|++.+++....+......+..+.++|+++.++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 268 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPG-PK--GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD- 268 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEEC-GG--GCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT-
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEc-CC--CeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC-
Confidence 0 002223333335544433 22 468889997776655555445567778899999876655432
Q ss_pred CCCcEEEEEeC
Q psy1288 363 LQPTIIFHCNI 373 (1012)
Q Consensus 363 ~~p~~l~~~d~ 373 (1012)
..+..+|+
T Consensus 269 ---~~i~i~d~ 276 (425)
T 1r5m_A 269 ---GTLRIWHG 276 (425)
T ss_dssp ---SCEEEECS
T ss_pred ---CEEEEEEC
Confidence 35888888
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.014 Score=66.26 Aligned_cols=222 Identities=11% Similarity=0.092 Sum_probs=113.8
Q ss_pred EEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec-ceeeeeeEE
Q psy1288 132 MYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH-RLKFVSIAW 210 (1012)
Q Consensus 132 l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~-~~~~~~~~W 210 (1012)
|++-+...++...++... ++...+..++|||||++||-.... | .|.++|+++++....... ..... ++
T Consensus 127 V~lWd~~tg~~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~D-g----~v~iWd~~~~~~~~~~~~h~~~v~--~~ 195 (420)
T 4gga_A 127 VYLWSASSGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSS-A----EVQLWDVQQQKRLRNMTSHSARVG--SL 195 (420)
T ss_dssp EEEEETTTCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETT-S----CEEEEETTTTEEEEEECCCSSCEE--EE
T ss_pred EEEEECCCCCEEEEEEec----CCCCcEEEEEECCCCCEEEEEECC-C----eEEEEEcCCCcEEEEEeCCCCceE--EE
Confidence 444455566655555422 123468899999999999865432 2 689999999987543222 22233 34
Q ss_pred eeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccC--cE
Q psy1288 211 THDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESN--WK 288 (1012)
Q Consensus 211 SpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~--~~ 288 (1012)
++|++.|+-...+....-. +.......+.........+....++++|..++...+. ..+...+...++... ..
T Consensus 196 s~~~~~l~sgs~d~~i~~~-d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D----~~v~i~~~~~~~~~~~~~~ 270 (420)
T 4gga_A 196 SWNSYILSSGSRSGHIHHH-DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND----NLVNVWPSAPGEGGWVPLQ 270 (420)
T ss_dssp EEETTEEEEEETTSEEEEE-ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEESSCCSSCSCCSE
T ss_pred eeCCCEEEEEeCCCceeEe-eecccceeeEEecccccceeeeeecCCCCeeeeeecc----ccceEEeeccccccceeee
Confidence 4567665544433110000 0000000000000001223334588899888877654 345556665443111 11
Q ss_pred EeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEE
Q psy1288 289 TLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTII 368 (1012)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l 368 (1012)
.. ......+........+..+++.........|.+|++.+|+....+... ..+....++++++.++..... .-..|
T Consensus 271 ~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~--~d~~I 346 (420)
T 4gga_A 271 TF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF--AQNQL 346 (420)
T ss_dssp EE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT--TTCCE
T ss_pred ee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec--CCCEE
Confidence 11 122222222222223234444333223357889999888765555443 234466788999888765432 22458
Q ss_pred EEEeC
Q psy1288 369 FHCNI 373 (1012)
Q Consensus 369 ~~~d~ 373 (1012)
.++|+
T Consensus 347 ~iwd~ 351 (420)
T 4gga_A 347 VIWKY 351 (420)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88888
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=6.9e-06 Score=93.66 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=41.0
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+|++|+||++|..+ ..++.+|+++|+++|+ +++|.++|+ ||++.
T Consensus 335 ~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~-------~v~~~~~~G-gH~~~ 381 (403)
T 3c8d_A 335 AEGLRIVLEAGIREPMI-MRANQALYAQLHPIKE-------SIFWRQVDG-GHDAL 381 (403)
T ss_dssp CCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTT-------SEEEEEESC-CSCHH
T ss_pred CCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCC-------CEEEEEeCC-CCCHH
Confidence 44589999999999764 5799999999999998 999999999 79863
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.63 E-value=5.2e-05 Score=83.75 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=40.7
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
..+|+||+||++|. +..++.+++.+|+..++ +++++++|+.||++..
T Consensus 255 ~~~P~lii~G~~D~--~~~~~~~~~~~l~~~~~-------~~~~~~~~g~~H~~~~ 301 (326)
T 3d7r_A 255 GLPPVYMFGGGREM--THPDMKLFEQMMLQHHQ-------YIEFYDYPKMVHDFPI 301 (326)
T ss_dssp TCCCEEEEEETTST--THHHHHHHHHHHHHTTC-------CEEEEEETTCCTTGGG
T ss_pred cCCCEEEEEeCccc--chHHHHHHHHHHHHCCC-------cEEEEEeCCCcccccc
Confidence 34799999999996 45578899999999888 9999999999999754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00022 Score=79.82 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=109.5
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|++++.... ++.-.||-... +.++.+.... ++...+..++|||||++|+.... +| .|+++|++
T Consensus 20 s~~g~~l~~~~~---d~~i~iw~~~~--~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~-d~----~v~vwd~~ 85 (377)
T 3dwl_C 20 NSQRTEFVTTTA---TNQVELYEQDG--NGWKHARTFS----DHDKIVTCVDWAPKSNRIVTCSQ-DR----NAYVYEKR 85 (377)
T ss_dssp CSSSSEEECCCS---SSCBCEEEEET--TEEEECCCBC----CCSSCEEEEEECTTTCCEEEEET-TS----SEEEC---
T ss_pred CCCCCEEEEecC---CCEEEEEEccC--CceEEEEEEe----cCCceEEEEEEeCCCCEEEEEeC-CC----eEEEEEcC
Confidence 478887765432 23456776553 3223322211 12346788999999998886553 23 68999998
Q ss_pred CCc----eeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeec-cccceeeeeeecCCCEEEEEE
Q psy1288 192 TGK----EYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTV-NVAPITSQYITNEGPQFVFKT 265 (1012)
Q Consensus 192 tg~----~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~-~~~~i~~~~~s~dg~~l~~~t 265 (1012)
+++ .............++|+|||+.|+....+....-. ........+...... ....+....|+|+++.|+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 877 22222223346789999999988877654321000 000000000000000 112344456899998887776
Q ss_pred CCCCCCceEEEEeCCCCcc------c------CcEEeec--cCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCc
Q psy1288 266 NKDAPNYRLITIDFDNFAE------S------NWKTLIE--ENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGK 331 (1012)
Q Consensus 266 n~~~~~~~L~~~dl~~~~~------~------~~~~l~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~ 331 (1012)
.. ..+...|+...+. . ....++. .... .+..+.+..++.+++....+ ..|.+|++.+++
T Consensus 166 ~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d--~~i~iwd~~~~~ 238 (377)
T 3dwl_C 166 AD----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG-WVHAVGFSPSGNALAYAGHD--SSVTIAYPSAPE 238 (377)
T ss_dssp SS----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS-SEEEEEECTTSSCEEEEETT--TEEC-CEECSTT
T ss_pred CC----CEEEEEEEEecccCCCccccccccccchhhhhhcccCCc-eEEEEEECCCCCEEEEEeCC--CcEEEEECCCCC
Confidence 53 2344445432110 0 0011111 1112 23333333223333333444 357788887766
Q ss_pred e----eeeecCCceEEEeecccccCcEEEE
Q psy1288 332 H----LYTFPLDVGTIVGFSGKKKYSEIFY 357 (1012)
Q Consensus 332 ~----~~~l~~~~~~v~~~~~spdg~~l~~ 357 (1012)
. ...+......+..+.|+|+++.|+.
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred CcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 4 3344444455778889999876543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.039 Score=65.36 Aligned_cols=202 Identities=10% Similarity=-0.022 Sum_probs=104.8
Q ss_pred eeeEEEC----CCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cc-----------eeeeeeEEeeCCCeEEEEec
Q psy1288 159 LGSYSFS----EDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HR-----------LKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 159 i~~~~~S----PDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~-----------~~~~~~~WSpDG~~l~y~~~ 222 (1012)
...+.+| |||++++.+....+ ++.++|.++.+.+.... .. .....+.-|+++..+++...
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~----~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPP----QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETT----EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CceeEEccccCCCCCEEEEEEccCC----eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 3478899 79999876655433 68899999988764211 11 12345677888776665543
Q ss_pred CCCCCcccCCCCCceEEEEeecccc-ceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeecc-C--C--C
Q psy1288 223 EPKSKSKKHSKKNRSSAYHLTVNVA-PITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEE-N--K--D 296 (1012)
Q Consensus 223 ~~~~~g~~~~~~~~~l~~~~~~~~~-~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~-~--~--~ 296 (1012)
.....-..+......+.... .... .+....|++||++|++..+. ..+|..+|.++.+. ...++- . + .
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~---sn~V~ViD~~t~kl---~~~i~vgg~~Phpg 390 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEGKL---VAIEDTGGQTPHPG 390 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTTEE---EEEEECSSSSBCCT
T ss_pred CCCeEEEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCC---CCeEEEEECCCCcE---EEEEeccCcCCCCc
Confidence 21100000000000000000 0001 11123489999998888764 35688899887642 222222 1 1 1
Q ss_pred ceeeeeEEecCCEEEEEEEcCceEEEEEEecCCC-------ceeeeecCC-ceEEEeecccccCcEEEEEecCCCC---C
Q psy1288 297 DVLDWATCVANDKLILSYIHHVKNVMHLHDLASG-------KHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQ---P 365 (1012)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G-------~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~---p 365 (1012)
.-.. +...+++.+++. ..-+...+.+++.+++ +..+.+... .+.+ .+..+|+++.+++...-..+ .
T Consensus 391 ~g~~-~~~p~~g~v~~t-~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~-~i~~~p~~~~l~v~~~~~~~~~~~ 467 (567)
T 1qks_A 391 RGAN-FVHPTFGPVWAT-SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL-FIKTHPNSQYLYVDATLNPEAEIS 467 (567)
T ss_dssp TCEE-EEETTTEEEEEE-EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-CEECCTTCSEEEEECTTCSSHHHH
T ss_pred ccee-eECCCCCcEEEe-CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE-EEEeCCCCCeEEEecCCCCCcccC
Confidence 1122 122233455443 3334456888988653 233444433 2222 34568999998876532222 2
Q ss_pred cEEEEEeCC
Q psy1288 366 TIIFHCNIP 374 (1012)
Q Consensus 366 ~~l~~~d~~ 374 (1012)
.+|.++|+.
T Consensus 468 ~~v~v~d~~ 476 (567)
T 1qks_A 468 GSVAVFDIK 476 (567)
T ss_dssp TCEEEEEGG
T ss_pred ceEEEEECC
Confidence 478899983
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.7e-05 Score=80.94 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=43.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
++.+|+|+++|++|..||..++.+++++|+.. + +++++++++.||++...
T Consensus 158 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~H~~~~~ 207 (236)
T 1zi8_A 158 EVKHPALFHMGGQDHFVPAPSRQLITEGFGAN-------P-LLQVHWYEEAGHSFART 207 (236)
T ss_dssp GCCSCEEEEEETTCTTSCHHHHHHHHHHHTTC-------T-TEEEEEETTCCTTTTCT
T ss_pred hcCCCEEEEecCCCCCCCHHHHHHHHHHHHhC-------C-CceEEEECCCCcccccC
Confidence 56699999999999999999999999998763 2 67999999999998754
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=97.63 E-value=2.8e-05 Score=85.02 Aligned_cols=49 Identities=22% Similarity=0.122 Sum_probs=42.2
Q ss_pred CCCCceEEEcccCCCCCCCc-chHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPV-HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+|++||++|..||+. ++.+++++|+.. + +++++++++.||++..
T Consensus 208 ~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~g~gH~~~~ 257 (306)
T 3vis_A 208 DITVPTLIIGAEYDTIASVTLHSKPFYNSIPSP-------T-DKAYLELDGASHFAPN 257 (306)
T ss_dssp TCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTT-------S-CEEEEEETTCCTTGGG
T ss_pred cCCCCEEEEecCCCcccCcchhHHHHHHHhccC-------C-CceEEEECCCCccchh
Confidence 55699999999999999998 799999888763 2 7899999999999753
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=78.79 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=69.6
Q ss_pred CCCcEEEEEcCCCCCCC---CCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc
Q psy1288 430 GNNPCILYGYGGFAVSL---QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS 506 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~---~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~ 506 (1012)
++.|.||++||..+... ...|.. ....|.++|+.|+.+|++|.+... ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~-~~~~L~~~G~~v~~~d~~g~g~s~-------------~~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFG-IPSALRRDGAQVYVTEVSQLDTSE-------------VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTT-HHHHHHHTTCCEEEECCCSSSCHH-------------HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCCccccccccHHH-HHHHHHhCCCEEEEEeCCCCCCch-------------hhHHHHHHHHHHHHHH
Confidence 45678999999765432 123443 345666679999999999866421 1123444444444433
Q ss_pred CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 507 GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 507 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.+++.++|||+||.++..++.++|+.++++|...+
T Consensus 71 --~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~ 107 (285)
T 1ex9_A 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECC
Confidence 1346899999999999999999888998999888876
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0013 Score=76.83 Aligned_cols=192 Identities=8% Similarity=-0.006 Sum_probs=101.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecce-----eeeeeEEeeCCCeEEEEecCCCCCcc-c
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRL-----KFVSIAWTHDHKGVFYSNQEPKSKSK-K 230 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~-----~~~~~~WSpDG~~l~y~~~~~~~~g~-~ 230 (1012)
..+..++|||||++||-... +| .+.++|.++ ...... +.. ...+++|||||+.|+-...++...-. .
T Consensus 86 ~~V~~vawSPdG~~LAs~s~-dg----~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSN-NG----NVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp CCEEEEEECSSSSCEEEEET-TS----CEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeC-CC----cEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 35889999999999995543 33 577888544 111112 221 35789999999999888765421000 0
Q ss_pred CCCCC--ce-EEEEee----c-cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCccc-CcEEeeccCCCceeee
Q psy1288 231 HSKKN--RS-SAYHLT----V-NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAES-NWKTLIEENKDDVLDW 301 (1012)
Q Consensus 231 ~~~~~--~~-l~~~~~----~-~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~-~~~~l~~~~~~~~~~~ 301 (1012)
..+.. .. +..... . ....+....|+||| ++..+. ...+...++.+.... .++.+...... .+..
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tVrlWd~~~~~~~~~~~tL~~~h~~-~V~s 231 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSVFSMTVSASSHQPVSRMIQNASRR-KITD 231 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCEEEECCCSSSSCCCEEEEECCCSS-CCCC
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeEEEEECCCCccccceeeecccccC-cEEE
Confidence 11100 00 011110 0 01234455699998 544443 244666676654421 12334222222 2333
Q ss_pred eEEecCCEEEEEEEcCceEEEEEEecCCCceeeeec-CCceEEEeecc--cccCcEEEEEecCCCCCcEEEEE
Q psy1288 302 ATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFP-LDVGTIVGFSG--KKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 302 ~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~-~~~~~v~~~~~--spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
+.+. ++.++... + ..+.+|++.+++.. .+. .....+..+++ +||+..++....+.. .++..
T Consensus 232 vaFs-g~~LASa~--~--~tIkLWd~~~~~~~-~~~~gh~~~V~~va~~~s~d~~~La~a~edG~---klw~~ 295 (588)
T 2j04_A 232 LKIV-DYKVVLTC--P--GYVHKIDLKNYSIS-SLKTGSLENFHIIPLNHEKESTILLMSNKTSY---KVLLE 295 (588)
T ss_dssp EEEE-TTEEEEEC--S--SEEEEEETTTTEEE-EEECSCCSCCCEEEETTCSSCEEEEECSSCEE---EEEES
T ss_pred EEEE-CCEEEEEe--C--CeEEEEECCCCeEE-EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC---EEEee
Confidence 3333 36655443 2 58999999655442 233 22344556677 888877766654432 45554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0075 Score=66.96 Aligned_cols=194 Identities=12% Similarity=0.051 Sum_probs=110.2
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcc---cCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK---KHS 232 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~---~~~ 232 (1012)
..+..+.|||||++||-. +.+| .|.++|+.+++... ...........+|+|||+.|+-...+....-. ...
T Consensus 65 ~~V~~~~~s~d~~~l~s~-s~Dg----~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSS-SQDG----KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp SCEEEEEECTTSSEEEEE-ETTS----EEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred CeEEEEEECCCCCEEEEE-eCCC----eEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 457889999999988644 3333 79999998887543 22233335678999999988766543210000 000
Q ss_pred --C---CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-e-
Q psy1288 233 --K---KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-V- 305 (1012)
Q Consensus 233 --~---~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~- 305 (1012)
. ....+..|. ..+....|++++..|+..+. ...+...|+.+++. ...+..+. ..+. ...+ +
T Consensus 140 ~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~t~s~----D~~v~lwd~~~~~~--~~~~~~h~-~~v~-~~~~~~~ 207 (354)
T 2pbi_B 140 NENMAAKKKSVAMHT----NYLSACSFTNSDMQILTASG----DGTCALWDVESGQL--LQSFHGHG-ADVL-CLDLAPS 207 (354)
T ss_dssp TCCSGGGCEEEEECS----SCEEEEEECSSSSEEEEEET----TSEEEEEETTTCCE--EEEEECCS-SCEE-EEEECCC
T ss_pred cccccccceeeeccC----CcEEEEEEeCCCCEEEEEeC----CCcEEEEeCCCCeE--EEEEcCCC-CCeE-EEEEEeC
Confidence 0 000010010 22334458899888776663 34577778776541 12222222 2222 2222 1
Q ss_pred cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 306 ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 306 ~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+.++++...++ .+.+||+.+++....+......+..+.++|+++.++..... ..+..+|+
T Consensus 208 ~~g~~l~sgs~Dg--~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----~~v~lwd~ 269 (354)
T 2pbi_B 208 ETGNTFVSGGCDK--KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD----ATCRLYDL 269 (354)
T ss_dssp SSCCEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred CCCCEEEEEeCCC--eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEEC
Confidence 1123444444443 57888998777655555445567788899999876644332 35778888
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.006 Score=66.14 Aligned_cols=234 Identities=9% Similarity=0.042 Sum_probs=122.9
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+++.++|+++||+-... ..|++.+. +++.+++..+. .....+.++|||+.++. +..+ ..|+++
T Consensus 50 p~~~~~g~~l~~~d~~~----~~i~~~~~-~g~~~~~~~~~-------~~~~gl~~d~dG~l~v~--~~~~---~~v~~~ 112 (305)
T 3dr2_A 50 PAWWEAQRTLVWSDLVG----RRVLGWRE-DGTVDVLLDAT-------AFTNGNAVDAQQRLVHC--EHGR---RAITRS 112 (305)
T ss_dssp EEEEGGGTEEEEEETTT----TEEEEEET-TSCEEEEEESC-------SCEEEEEECTTSCEEEE--ETTT---TEEEEE
T ss_pred CeEeCCCCEEEEEECCC----CEEEEEeC-CCCEEEEeCCC-------CccceeeECCCCCEEEE--ECCC---CEEEEE
Confidence 34458899888875433 35777776 45555554421 23567899999995543 3322 268888
Q ss_pred ECCCCceeceee--cce---eeeeeEEeeCCCeEEEEec----CCCCCcc--cCCCCCceEEEEeecc--------ccce
Q psy1288 189 DVATGKEYPEVL--HRL---KFVSIAWTHDHKGVFYSNQ----EPKSKSK--KHSKKNRSSAYHLTVN--------VAPI 249 (1012)
Q Consensus 189 dl~tg~~~~~t~--~~~---~~~~~~WSpDG~~l~y~~~----~~~~~g~--~~~~~~~~l~~~~~~~--------~~~i 249 (1012)
|.+ |+.+.+.. ... ....+.++|||+ |+++.. .....+. ........++...... ....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p 190 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHP 190 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSE
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCC
Confidence 886 55443221 111 134689999996 666421 0000000 0000011222211100 0111
Q ss_pred eeeeeecCCCEEEEEECCC--CCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEec
Q psy1288 250 TSQYITNEGPQFVFKTNKD--APNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDL 327 (1012)
Q Consensus 250 ~~~~~s~dg~~l~~~tn~~--~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl 327 (1012)
....|+|||+.||+..... .....|++++++...... ..++..........+....++.|++.. . ..|++++.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~-~~~~~~~~~~~pdgi~~d~~G~lwv~~-~---~gv~~~~~ 265 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHD-RRHFASVPDGLPDGFCVDRGGWLWSSS-G---TGVCVFDS 265 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEE-EEEEECCSSSCCCSEEECTTSCEEECC-S---SEEEEECT
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccC-CeEEEECCCCCCCeEEECCCCCEEEec-C---CcEEEECC
Confidence 1235899999999886532 113578888876432111 122211111112233333334566554 2 24889998
Q ss_pred CCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 328 ASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 328 ~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+|+....+..+.. +..+.++++++.|+++.+. .||++++
T Consensus 266 -~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 266 -DGQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp -TSCEEEEEECSSC-CCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred -CCCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 5776666666542 4455667888999988754 6788765
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0086 Score=71.41 Aligned_cols=229 Identities=11% Similarity=0.036 Sum_probs=126.6
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCC----ceEEEcCCCCCCCCCceE-eeeEEECC--CCcEEEEEEeCCCCceE
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDG----EARVFLDPNNLSDDGTVS-LGSYSFSE--DGKTLAYCLSSSGSDWT 183 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g----~~~~L~D~n~la~~g~~~-i~~~~~SP--DGk~iAy~~~~~G~~~~ 183 (1012)
.+|+|+++++.. + +.-.||- ..++ +....+. ++... +..++||| ||++||.... +|
T Consensus 26 ~spdg~~l~~~~--~--~~v~v~~--~~~~~~~~~~~~~~~------~h~~~~v~~~~~sp~~~~~~l~s~~~-dg---- 88 (615)
T 1pgu_A 26 YDPTTNAIAYPC--G--KSAFVRC--LDDGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDE-SG---- 88 (615)
T ss_dssp EETTTTEEEEEE--T--TEEEEEE--CCSSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEET-TS----
T ss_pred ECCCCCEEEEec--C--CeEEEEE--CCCCCCccccceEEe------cCCCceEEEEEECcCCCCCEEEEecC-CC----
Confidence 468999999875 2 3445554 3333 3333332 12345 88999999 9999987554 23
Q ss_pred EEEEEECCCC------c--eec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcc---cCCCCCceEEEEeeccccceee
Q psy1288 184 SMHFKDVATG------K--EYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK---KHSKKNRSSAYHLTVNVAPITS 251 (1012)
Q Consensus 184 ~L~v~dl~tg------~--~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~---~~~~~~~~l~~~~~~~~~~i~~ 251 (1012)
.|.++|++++ + ... ..........++|+|||+.|+....+....+. -+.. ............+..
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEE
Confidence 7888898765 2 211 11123346789999999998887654211111 0100 011100011123444
Q ss_pred eeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCC--ceeeeeEEe-c-CCEEEEEEEcCceEEEEEEec
Q psy1288 252 QYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKD--DVLDWATCV-A-NDKLILSYIHHVKNVMHLHDL 327 (1012)
Q Consensus 252 ~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~--~~~~~~~~~-~-~~~l~~~~~~~g~~~l~~~dl 327 (1012)
..|+|+++.+++.... +..+...|+...+ ....+..... ..+..+.+. + ++.++.. ..+ ..+.+|++
T Consensus 166 ~~~~~~~~~~l~~~~~---d~~v~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d--g~i~vwd~ 236 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGD---DGSVVFYQGPPFK---FSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSD--RKISCFDG 236 (615)
T ss_dssp EEECSSSSCEEEEEET---TTEEEEEETTTBE---EEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETT--CCEEEEET
T ss_pred EEECCCCCcEEEEEeC---CCcEEEEeCCCcc---eeeeecccCCCCceEEEEEECCCCCCEEEEE-eCC--CeEEEEEC
Confidence 4689999854444432 3467777776543 1122222222 023334443 3 3444443 333 46888999
Q ss_pred CCCceeeee-c---CCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 328 ASGKHLYTF-P---LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 328 ~~G~~~~~l-~---~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+++....+ . .....+..+.++ +++.++..... ..+..+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~ 281 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDV 281 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEET
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEEC
Confidence 878766666 3 334556777888 77776655432 46888898
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00039 Score=73.26 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC-----CCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR-----PDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~~ 545 (1012)
+++..+++.+.+. ...+++.++|||+||.++...+.++ ++.+..+|...+
T Consensus 82 ~~l~~~~~~l~~~--~~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~ 136 (250)
T 3lp5_A 82 VWLNTAFKALVKT--YHFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIAS 136 (250)
T ss_dssp HHHHHHHHHHHTT--SCCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESC
T ss_pred HHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECC
Confidence 5566666666654 2447899999999999998888765 567777777655
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.59 E-value=3.7e-06 Score=90.86 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=43.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
++..|+||+||++|..||+.++.+++++|+.. + +++++++++.||.+...
T Consensus 174 ~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~-------~-~~~~~~~~~~gH~~~~~ 223 (290)
T 3ksr_A 174 QYKGDVLLVEAENDVIVPHPVMRNYADAFTNA-------R-SLTSRVIAGADHALSVK 223 (290)
T ss_dssp HCCSEEEEEEETTCSSSCHHHHHHHHHHTTTS-------S-EEEEEEETTCCTTCCSH
T ss_pred hcCCCeEEEEecCCcccChHHHHHHHHHhccC-------C-CceEEEcCCCCCCCCcc
Confidence 56699999999999999999999999988664 1 58999999999998653
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=97.59 E-value=6.8e-05 Score=78.60 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
+..+.|+++||..+... .|.. ....|. .++.|+.+|.||.|.... ....|+...++.+.+.-..
T Consensus 11 ~~~~~lv~lhg~g~~~~--~~~~-~~~~L~-~~~~vi~~Dl~GhG~S~~------------~~~~~~~~~~~~~~~~l~~ 74 (242)
T 2k2q_B 11 SEKTQLICFPFAGGYSA--SFRP-LHAFLQ-GECEMLAAEPPGHGTNQT------------SAIEDLEELTDLYKQELNL 74 (242)
T ss_dssp TCCCEEESSCCCCHHHH--HHHH-HHHHHC-CSCCCEEEECCSSCCSCC------------CTTTHHHHHHHHTTTTCCC
T ss_pred CCCceEEEECCCCCCHH--HHHH-HHHhCC-CCeEEEEEeCCCCCCCCC------------CCcCCHHHHHHHHHHHHHh
Confidence 34567889999754332 3333 234455 479999999999875421 1134666555555443212
Q ss_pred C-CCcEEEEecChHHHHHHHHHhh
Q psy1288 510 Q-SSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 510 d-~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
. .+++.++|||+||.++..++.+
T Consensus 75 ~~~~~~~lvGhSmGG~iA~~~A~~ 98 (242)
T 2k2q_B 75 RPDRPFVLFGHSMGGMITFRLAQK 98 (242)
T ss_dssp CCCSSCEEECCSSCCHHHHHHHHH
T ss_pred hcCCCEEEEeCCHhHHHHHHHHHH
Confidence 2 2579999999999999988765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.04 Score=61.32 Aligned_cols=236 Identities=8% Similarity=0.028 Sum_probs=117.2
Q ss_pred eeeC-CEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECC-CCcEEEEEEeCCCCceEEEEEEE
Q psy1288 112 QRQG-DHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSE-DGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 112 ~~dG-~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SP-DGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
+|+| .+++-...+ +.-.|| +..++.....+... +....+..+.||| |+++|+ +.+.+| .|.++|
T Consensus 82 ~~~~~~~l~s~~~d---g~i~iw--d~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~l~-s~~~d~----~i~iwd 147 (383)
T 3ei3_B 82 HPTHPTTVAVGSKG---GDIILW--DYDVQNKTSFIQGM----GPGDAITGMKFNQFNTNQLF-VSSIRG----ATTLRD 147 (383)
T ss_dssp CSSCTTEEEEEEBT---SCEEEE--ETTSTTCEEEECCC----STTCBEEEEEEETTEEEEEE-EEETTT----EEEEEE
T ss_pred CCCCCCEEEEEcCC---CeEEEE--eCCCcccceeeecC----CcCCceeEEEeCCCCCCEEE-EEeCCC----EEEEEE
Confidence 4677 555544332 234455 44444444433311 1334688999999 555555 444444 799999
Q ss_pred CCCCceeceeecc---eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEEC
Q psy1288 190 VATGKEYPEVLHR---LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 190 l~tg~~~~~t~~~---~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn 266 (1012)
+.++......... .....++|+||++.|+....+....-. +.. . ..+.........+....|+|+++.+++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~-d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 224 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL-GLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSS 224 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE-ETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE-ECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence 9976544332222 235789999999988766543210000 000 0 000000011133444568999984444443
Q ss_pred CCCCCceEEEEeCCCCcc-cCcEEeeccCCCceeeeeEE-e-cCCEEEEEEEcCceEEEEEEecCCCceeeeecCC----
Q psy1288 267 KDAPNYRLITIDFDNFAE-SNWKTLIEENKDDVLDWATC-V-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD---- 339 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~~-~~~~~l~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~---- 339 (1012)
. +..+...|+..... ........+. . .+..+.+ . +++.++ ....+ ..|.+|++.+++....+...
T Consensus 225 ~---d~~i~iwd~~~~~~~~~~~~~~~~~-~-~v~~~~~s~~~~~~l~-~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 225 V---DATVKLWDLRNIKDKNSYIAEMPHE-K-PVNAAYFNPTDSTKLL-TTDQR--NEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp T---TSEEEEEEGGGCCSTTCEEEEEECS-S-CEEEEEECTTTSCEEE-EEESS--SEEEEEETTBTTSCSEEEECCBCC
T ss_pred C---CCEEEEEeCCCCCcccceEEEecCC-C-ceEEEEEcCCCCCEEE-EEcCC--CcEEEEECCCCccccccccccccc
Confidence 3 34577777765321 1122222222 2 2333333 3 434444 33333 46888998776543333211
Q ss_pred ---ceEEEeecccccCcEEEEEec-----CCCCCcEEEEEeC
Q psy1288 340 ---VGTIVGFSGKKKYSEIFYSFM-----SFLQPTIIFHCNI 373 (1012)
Q Consensus 340 ---~~~v~~~~~spdg~~l~~~~s-----s~~~p~~l~~~d~ 373 (1012)
...+ ...|+|++..+.+..+ +...-..+..+|+
T Consensus 297 ~~~~~~~-~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 297 FQHLTPI-KATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDA 337 (383)
T ss_dssp CTTSCCC-CCEECSSSSEEEEECBCCTTTCTTCCCCEEEEET
T ss_pred cccccce-EEeccCCCCceEEEecCCcccccCCCCeEEEEec
Confidence 1111 1245566655554443 1223456888998
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0044 Score=70.14 Aligned_cols=197 Identities=10% Similarity=0.039 Sum_probs=103.6
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec-------------------------ceeeeeeEEe
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH-------------------------RLKFVSIAWT 211 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~-------------------------~~~~~~~~WS 211 (1012)
..+..+.|||||++|+... .+| .|.++|+.+++....... ......+.|+
T Consensus 182 ~~v~~~~~~~~~~~l~s~~-~d~----~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSAS-LDG----TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp SCEEEEEEETTTTEEEEEE-TTS----CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred CcEEEEEEcCCCCEEEEEc-CCC----cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 4578899999999998543 333 689999998876532211 1123456788
Q ss_pred eCCCeEEEEecCCCCCcccCCCCCceEEEEeec-cccceeeeeeecCCC-EEEEEECCCCCCceEEEEeCCCCcccCcEE
Q psy1288 212 HDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV-NVAPITSQYITNEGP-QFVFKTNKDAPNYRLITIDFDNFAESNWKT 289 (1012)
Q Consensus 212 pDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~-~~~~i~~~~~s~dg~-~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~ 289 (1012)
|||+.|+....++...-. +......+ ..... ....+....|+|+++ .|+..+. +..|...|+.++.. ....
T Consensus 257 ~~~~~l~~~~~dg~i~i~-d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~----dg~i~vwd~~~~~~-~~~~ 329 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVH-NVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYE----NGMLAQWDLRSPEC-PVGE 329 (420)
T ss_dssp CTTEEEEEEETTSCEEEE-ETTTCCEE-EEECCTTSSCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTS-CSEE
T ss_pred CCCCEEEEEcCCCeEEEE-ECCCCcee-EEcccccCCCceeEEEeCCCCCEEEEEeC----CCeEEEEEcCCCcC-chhh
Confidence 999888766544211000 00000111 11100 012344456899998 5555442 35688888876541 1233
Q ss_pred eeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee---------eecCCceEEEeecccccCc---EEEE
Q psy1288 290 LIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY---------TFPLDVGTIVGFSGKKKYS---EIFY 357 (1012)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~---------~l~~~~~~v~~~~~spdg~---~l~~ 357 (1012)
+..+. ...+....+.+ +.+++....+ ..+.+|++.+++... .+....+.+..+.|+|+++ .++.
T Consensus 330 ~~~~~-~~~v~~~~~~~-~~~l~s~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a 405 (420)
T 3vl1_A 330 FLINE-GTPINNVYFAA-GALFVSSGFD--TSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLE 405 (420)
T ss_dssp EEEST-TSCEEEEEEET-TEEEEEETTT--EEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEE
T ss_pred hhccC-CCCceEEEeCC-CCEEEEecCC--ccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEE
Confidence 33323 33444445555 4555544444 467777775432211 1111123445667788877 5655
Q ss_pred EecCCCCCcEEEEEeC
Q psy1288 358 SFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 358 ~~ss~~~p~~l~~~d~ 373 (1012)
..+. ..+..+++
T Consensus 406 ~g~~----g~~~~~~~ 417 (420)
T 3vl1_A 406 VGKN----NFCALYNL 417 (420)
T ss_dssp EETT----TEEEEEES
T ss_pred EcCC----ceEEEEec
Confidence 5433 23555555
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00024 Score=78.00 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCCcEEEEEcCCCCCCCC----CCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQ----PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIA 505 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~----~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~ 505 (1012)
.+.|.||++||..+.... ..|.. ....|.++|+.|+.+|++|.+..... ....+++.+.++.+++
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~-l~~~L~~~G~~V~~~d~~g~g~s~~~----------~~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYG-IQEDLQQRGATVYVANLSGFQSDDGP----------NGRGEQLLAYVKTVLA 74 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTT-HHHHHHHTTCCEEECCCCSSCCSSST----------TSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHH-HHHHHHhCCCEEEEEcCCCCCCCCCC----------CCCHHHHHHHHHHHHH
Confidence 456789999997654311 23443 35567778999999999987653111 1223445444444444
Q ss_pred cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 506 SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 506 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
. ...+++.++|||+||.++..++.++|+.++++|...+
T Consensus 75 ~--~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~ 112 (320)
T 1ys1_X 75 A--TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGT 112 (320)
T ss_dssp H--HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred H--hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECC
Confidence 3 2346899999999999999999998999999888876
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.068 Score=58.00 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=101.8
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
...+....|||||++|+-.. .+| .|+++|+++++...... .......+.|+||++.|+-.+.+....-. +..
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s-~D~----~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw-d~~- 137 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSAS-WDK----TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIK- 137 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE-ETT-
T ss_pred cccEEEEEECCCCCEEEEEe-CCC----EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE-ECC-
Confidence 34577899999999987543 322 89999999998654322 23345788999999877766544211000 000
Q ss_pred CceEEEEeeccccceeeeeeecC------CCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCC
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNE------GPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVAND 308 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~d------g~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (1012)
...+ .........+....++|. +..|+..+. +..+...|+..... ...+..+. .. +..+.+..++
T Consensus 138 ~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~--~~~~~~h~-~~-v~~~~~sp~g 208 (319)
T 3frx_A 138 GQCL-ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN----DKMVKAWNLNQFQI--EADFIGHN-SN-INTLTASPDG 208 (319)
T ss_dssp SCEE-EEECCCSSCEEEEEECCC------CCEEEEEET----TSCEEEEETTTTEE--EEEECCCC-SC-EEEEEECTTS
T ss_pred CCeE-EEEeccCCcEEEEEEccCCCCCCCccEEEEEeC----CCEEEEEECCcchh--heeecCCC-Cc-EEEEEEcCCC
Confidence 0000 000000011222224443 223433332 23466667765431 11222222 22 2333333323
Q ss_pred EEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 309 KLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+++....+ ..+.+|++.+++....+... ..+..+.++|++..++..... .+..+++
T Consensus 209 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-----~i~v~~~ 265 (319)
T 3frx_A 209 TLIASAGKD--GEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-----GIKVFSL 265 (319)
T ss_dssp SEEEEEETT--CEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-----EEEEEEE
T ss_pred CEEEEEeCC--CeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-----CcEEEEe
Confidence 344444444 46888999777655555433 346678899999877765432 3556666
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.1e-06 Score=89.83 Aligned_cols=129 Identities=8% Similarity=-0.073 Sum_probs=79.1
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCccCCccccccCccceeeeccccccccchhhhcccccCCCCCCCCCCCcccCCCCCChh
Q psy1288 711 PVIYFYLTSGPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDYGSPANSS 790 (1012)
Q Consensus 711 ~~~~fl~~~l~~~~~~~d~~~~~GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 790 (1012)
+++.++++...... ...++|.|+| ++.++..+..+|+.|.+.++= +...+| + +..
T Consensus 124 el~p~i~~~~~~~~----~r~i~G~S~G-------G~~al~~~~~~p~~F~~~~~~-------S~~~w~----~---~~~ 178 (331)
T 3gff_A 124 ELAPSIESQLRTNG----INVLVGHSFG-------GLVAMEALRTDRPLFSAYLAL-------DTSLWF----D---SPH 178 (331)
T ss_dssp THHHHHHHHSCEEE----EEEEEEETHH-------HHHHHHHHHTTCSSCSEEEEE-------SCCTTT----T---TTH
T ss_pred HHHHHHHHHCCCCC----CeEEEEECHH-------HHHHHHHHHhCchhhheeeEe-------CchhcC----C---hHH
Confidence 44556666654311 1123388999 777777777778888664431 111122 1 111
Q ss_pred hhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCC-------CCCCcchHHHHHHHHHH---hcCCCCCCCCEEEEEe
Q psy1288 791 QFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDD-------RVSPVHSLKFAATLQEK---LRDYPHQTNPLLIRIE 860 (1012)
Q Consensus 791 ~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~-------rv~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~ 860 (1012)
..+.+.+ .+...+ ...+|++|.||++|. +++..++.+|+++||++ |+ ++.|.++
T Consensus 179 ~~~~~~~--~~~~~~-------~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l~~~Lk~~~~~g~-------~~~~~~~ 242 (331)
T 3gff_A 179 YLTLLEE--RVVKGD-------FKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFADKLTKLAPKGL-------GFMAKYY 242 (331)
T ss_dssp HHHHHHH--HHHHCC-------CSSEEEEEEECCCSEETTTEECCHHHHHHHHHHHHHHHHCCTTE-------EEEEEEC
T ss_pred HHHHHHH--Hhhccc-------CCCCeEEEEeCCCCCCCccchHHHHHHHHHHHHHHHHhccCCCc-------eEEEEEC
Confidence 1111111 111111 223899999999999 78899999999999998 66 9999999
Q ss_pred CCCCCCCCCCchhhhhhhhh
Q psy1288 861 TKAGHGGGKPTTKQLCVRYM 880 (1012)
Q Consensus 861 ~~~gH~~~~~~~~~~~~~~~ 880 (1012)
|+++|+...+......+...
T Consensus 243 pg~~H~sv~~~~~~~~l~~l 262 (331)
T 3gff_A 243 PEETHQSVSHIGLYDGIRHL 262 (331)
T ss_dssp TTCCTTTHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHH
Confidence 99999875543333333333
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00028 Score=77.31 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHh-CCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRD-FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
.|.||++||+.... ..|.. ....|.+ .+|.|+.+|.||.|..... ...........+|+.+.++.+... .
T Consensus 38 ~p~lvllHG~~~~~--~~w~~-~~~~L~~~~~~~via~Dl~GhG~S~~~---~~~~~~~~~~a~dl~~~l~~l~~~---~ 108 (316)
T 3c5v_A 38 GPVLLLLHGGGHSA--LSWAV-FTAAIISRVQCRIVALDLRSHGETKVK---NPEDLSAETMAKDVGNVVEAMYGD---L 108 (316)
T ss_dssp SCEEEEECCTTCCG--GGGHH-HHHHHHTTBCCEEEEECCTTSTTCBCS---CTTCCCHHHHHHHHHHHHHHHHTT---C
T ss_pred CcEEEEECCCCccc--ccHHH-HHHHHhhcCCeEEEEecCCCCCCCCCC---CccccCHHHHHHHHHHHHHHHhcc---C
Confidence 47899999975433 23543 3455653 2899999999998854211 000000111234444455544311 1
Q ss_pred CCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
++++.++|||+||.+++.++.+ .|+ +.++|...+
T Consensus 109 ~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~ 144 (316)
T 3c5v_A 109 PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDV 144 (316)
T ss_dssp CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESC
T ss_pred CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcc
Confidence 2679999999999999998875 476 777776644
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00027 Score=80.77 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCCCCCCCCc--ChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh---hhc---CCCcchHhHHHHHHHH
Q psy1288 431 NNPCILYGYGGFAVSLQPGF--SVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG---GRL---LNKQNVFDDFQCAAEY 502 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~--~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~---~~~---~~~~~~~~D~~a~~~~ 502 (1012)
..|+ ++.|||.+.... .+ ......+....|+.|+..|.||.|.....-... ... .......+|+...+++
T Consensus 38 g~Pi-~l~~Ggeg~~~~-~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~ 115 (446)
T 3n2z_B 38 GGSI-LFYTGNEGDIIW-FCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKH 115 (446)
T ss_dssp TCEE-EEEECCSSCHHH-HHHHCHHHHHHHHHHTEEEEEECCTTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHHHH
T ss_pred CCCE-EEEeCCCCcchh-hhhcccHHHHHHHHhCCcEEEEecCCCCCCCCCCccccccchhhccCCHHHHHHHHHHHHHH
Confidence 3565 555888764321 11 122233444458999999999988653210000 000 0112345677777777
Q ss_pred HHHcC-CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 503 LIASG-YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 503 l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+...- .....++.++||||||.++++.+.++|+++.++|+.++
T Consensus 116 l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 116 LKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 76541 22335799999999999999999999999999888765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0093 Score=63.03 Aligned_cols=194 Identities=13% Similarity=0.063 Sum_probs=109.1
Q ss_pred eeeEEECCCCcEEEEEEe-CCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 159 LGSYSFSEDGKTLAYCLS-SSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~-~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
...+.++||| + +|..+ ..| ...|.++|+++|+..... ..... .....+++|+.||.+.......-..+.. ..
T Consensus 23 ~~Gl~~~~dg-~-Lyvstg~~~--~s~v~~iD~~tg~v~~~i~l~~~~-fgeGi~~~g~~lyv~t~~~~~v~viD~~-t~ 96 (266)
T 2iwa_A 23 TQGLVYAEND-T-LFESTGLYG--RSSVRQVALQTGKVENIHKMDDSY-FGEGLTLLNEKLYQVVWLKNIGFIYDRR-TL 96 (266)
T ss_dssp EEEEEECSTT-E-EEEEECSTT--TCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEETTCSEEEEEETT-TT
T ss_pred cccEEEeCCC-e-EEEECCCCC--CCEEEEEECCCCCEEEEEecCCCc-ceEEEEEeCCEEEEEEecCCEEEEEECC-CC
Confidence 3467899996 4 55544 223 248999999999986532 22221 2223445677887776432110001111 11
Q ss_pred eEEEEeecc-ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeecc-CCC--ceeeeeEEecCCEEEE
Q psy1288 237 SSAYHLTVN-VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEE-NKD--DVLDWATCVANDKLIL 312 (1012)
Q Consensus 237 ~l~~~~~~~-~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~-~~~--~~~~~~~~~~~~~l~~ 312 (1012)
+++-..+.+ ..+. .+++||+++|+ ++ + ...|..+|.++.+. ...+... ++. ..+..+.+.+ +.+++
T Consensus 97 ~v~~~i~~g~~~g~---glt~Dg~~l~v-s~-g--s~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~d-g~lyv 166 (266)
T 2iwa_A 97 SNIKNFTHQMKDGW---GLATDGKILYG-SD-G--TSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYIN-GEVWA 166 (266)
T ss_dssp EEEEEEECCSSSCC---EEEECSSSEEE-EC-S--SSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEET-TEEEE
T ss_pred cEEEEEECCCCCeE---EEEECCCEEEE-EC-C--CCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEEC-CEEEE
Confidence 121111111 1111 36789999886 55 2 45899999877542 1222211 111 1223334445 67765
Q ss_pred EEEcCceEEEEEEecCCCceeeeecCCc-------------eEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 313 SYIHHVKNVMHLHDLASGKHLYTFPLDV-------------GTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 313 ~~~~~g~~~l~~~dl~~G~~~~~l~~~~-------------~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.... ...|.++|+++|+....++.+. ....++++++++++++++.... +.++.+++
T Consensus 167 n~~~--~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l 235 (266)
T 2iwa_A 167 NIWQ--TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKL 235 (266)
T ss_dssp EETT--SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEE
T ss_pred ecCC--CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEE
Confidence 4322 3589999999998777776531 2446788999999988876543 46888887
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0005 Score=74.48 Aligned_cols=116 Identities=12% Similarity=-0.042 Sum_probs=74.8
Q ss_pred eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHh
Q psy1288 415 KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFD 494 (1012)
Q Consensus 415 ~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~ 494 (1012)
.+...++.|.. .+.+..+.||++||...... ..|.......|.++||.|+.+|++|.|.... ....+
T Consensus 49 ~L~~~i~~p~~-~~~~~~~pVVLvHG~~~~~~-~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~~-----------~~~~~ 115 (316)
T 3icv_A 49 VLDAGLTCQGA-SPSSVSKPILLVPGTGTTGP-QSFDSNWIPLSAQLGYTPCWISPPPFMLNDT-----------QVNTE 115 (316)
T ss_dssp HHHHTEEETTB-BTTBCSSEEEEECCTTCCHH-HHHTTTHHHHHHHTTCEEEEECCTTTTCSCH-----------HHHHH
T ss_pred hHhhhEeCCCC-CCCCCCCeEEEECCCCCCcH-HHHHHHHHHHHHHCCCeEEEecCCCCCCCcH-----------HHHHH
Confidence 34444555533 23344567888999754321 1343124566777799999999998653211 11234
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC---CCceeEEEEccC
Q psy1288 495 DFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR---PDLFGAAIVQVG 545 (1012)
Q Consensus 495 D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~~~ 545 (1012)
++.+.++.+.+.. ..+++.++|||+||.++..++... +++++..|...+
T Consensus 116 ~la~~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lap 167 (316)
T 3icv_A 116 YMVNAITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 167 (316)
T ss_dssp HHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESC
T ss_pred HHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECC
Confidence 5666666666552 336899999999999987777664 578999998877
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0037 Score=69.59 Aligned_cols=197 Identities=10% Similarity=0.024 Sum_probs=106.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEec-CCCCCcc-cCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQ-EPKSKSK-KHSK 233 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~-~~~~~g~-~~~~ 233 (1012)
..+..++|||||++|+-... +| .|+++|+++++..... ........++|+||++.++.+.. +....-. ....
T Consensus 140 ~~V~~v~~spdg~~l~sgs~-dg----~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~ 214 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGK-DF----SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214 (357)
T ss_dssp SCEEEEEECSSSSEEEEEET-TS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS
T ss_pred CCEEEEEECCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC
Confidence 45788999999999875433 33 6899999998865432 22334577899999986655543 2210000 0000
Q ss_pred CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEE
Q psy1288 234 KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLIL 312 (1012)
Q Consensus 234 ~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~ 312 (1012)
..... .........+....|+|+++.+++.... +..|...|+.+++. ...+..+ ...+ ..+.+ .+++.+++
T Consensus 215 ~~~~~-~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~wd~~~~~~--~~~~~~~-~~~v-~~l~~sp~~~~~la 286 (357)
T 4g56_B 215 KPATR-IDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLVNIKNPDS--AQTSAVH-SQNI-TGLAYSYHSSPFLA 286 (357)
T ss_dssp SCBCB-CCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEEESSCGGG--CEEECCC-SSCE-EEEEECSSSSCCEE
T ss_pred ceeee-eeeccccccccchhhhhcccceEEEeec---ccceeEEECCCCcE--eEEEecc-ceeE-EEEEEcCCCCCEEE
Confidence 00000 0000000112234588887766555433 34577778876542 2333222 2222 33333 34445555
Q ss_pred EEEcCceEEEEEEecCCCceeeeecCCceEEEeecccc-cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 313 SYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKK-KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 313 ~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~sp-dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+...++ .|.+||+.+++....+. ....|..++|+| |++.|+ +.+. -..|..+|+
T Consensus 287 sgs~D~--~i~iwd~~~~~~~~~~~-H~~~V~~vafsP~d~~~l~-s~s~---Dg~v~iW~~ 341 (357)
T 4g56_B 287 SISEDC--TVAVLDADFSEVFRDLS-HRDFVTGVAWSPLDHSKFT-TVGW---DHKVLHHHL 341 (357)
T ss_dssp EEETTS--CEEEECTTSCEEEEECC-CSSCEEEEEECSSSTTEEE-EEET---TSCEEEEEC
T ss_pred EEeCCC--EEEEEECCCCcEeEECC-CCCCEEEEEEeCCCCCEEE-EEcC---CCeEEEEEC
Confidence 544444 57788997776544332 245577889998 566544 4332 235777787
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.006 Score=68.17 Aligned_cols=193 Identities=17% Similarity=0.146 Sum_probs=101.3
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|||++++...... +..-.|| +...+.....+. +...+.+++|||||++|+...+. .+.+++.
T Consensus 141 fSpDg~~la~as~~~-d~~i~iw--d~~~~~~~~~~~-------~~~~V~~v~fspdg~~l~s~s~~------~~~~~~~ 204 (365)
T 4h5i_A 141 ISREGTVAAIASSKV-PAIMRII--DPSDLTEKFEIE-------TRGEVKDLHFSTDGKVVAYITGS------SLEVIST 204 (365)
T ss_dssp ECTTSSCEEEEESCS-SCEEEEE--ETTTTEEEEEEE-------CSSCCCEEEECTTSSEEEEECSS------CEEEEET
T ss_pred EcCCCCEEEEEECCC-CCEEEEe--ECCCCcEEEEeC-------CCCceEEEEEccCCceEEeccce------eEEEEEe
Confidence 458888877654221 2233444 554454433333 22347789999999999886521 4677787
Q ss_pred CCCceece-ee--cceeeeeeEEeeCCCeEEEEecCCCCCcc---cCCC-CCceEEEEe--eccccceeeeeeecCCCEE
Q psy1288 191 ATGKEYPE-VL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSK---KHSK-KNRSSAYHL--TVNVAPITSQYITNEGPQF 261 (1012)
Q Consensus 191 ~tg~~~~~-t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~---~~~~-~~~~l~~~~--~~~~~~i~~~~~s~dg~~l 261 (1012)
.+++.... +. ....+..++|+|||+.++..+.+...... .+.. ......... ......+....|+|||+.|
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence 77765432 11 23346789999999988877654211000 0000 000000000 0011334455699999988
Q ss_pred EEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecC
Q psy1288 262 VFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLA 328 (1012)
Q Consensus 262 ~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~ 328 (1012)
+..+.. ..+...|+.+++. ...+.......+ ..+.+..++.++++...|+ .|.+|++.
T Consensus 285 asgs~D----~~V~iwd~~~~~~--~~~~~~gH~~~V-~~v~fSpdg~~laS~S~D~--tvrvw~ip 342 (365)
T 4h5i_A 285 VLASND----NSIALVKLKDLSM--SKIFKQAHSFAI-TEVTISPDSTYVASVSAAN--TIHIIKLP 342 (365)
T ss_dssp EEEETT----SCEEEEETTTTEE--EEEETTSSSSCE-EEEEECTTSCEEEEEETTS--EEEEEECC
T ss_pred EEEcCC----CEEEEEECCCCcE--EEEecCcccCCE-EEEEECCCCCEEEEEeCCC--eEEEEEcC
Confidence 887753 3577778876541 222222222333 3343333244445555554 45666763
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=97.52 E-value=3.9e-05 Score=79.23 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=43.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
.+.+|+||+||++|..||..+++ +++.|+..|+ ++++++++ .||++.
T Consensus 156 ~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~-------~~~~~~~~-~gH~~~ 202 (223)
T 3b5e_A 156 LAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGA-------EVDARIIP-SGHDIG 202 (223)
T ss_dssp CTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTC-------EEEEEEES-CCSCCC
T ss_pred ccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCC-------ceEEEEec-CCCCcC
Confidence 45699999999999999999999 9999999988 99999999 999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.01 Score=65.33 Aligned_cols=186 Identities=12% Similarity=0.078 Sum_probs=100.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+....|+||++ |+ +.+.+| .|.++|+++++...... .......++|+|||+.|+-...+....-. +....
T Consensus 144 ~~v~~~~~~~~~~-l~-s~s~d~----~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w-d~~~~ 216 (340)
T 1got_B 144 GYLSCCRFLDDNQ-IV-TSSGDT----TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW-DVREG 216 (340)
T ss_dssp SCEEEEEEEETTE-EE-EEETTS----CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE-ETTTC
T ss_pred ccEEEEEECCCCc-EE-EEECCC----cEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE-ECCCC
Confidence 3567788999987 33 333333 68999999988654222 22345789999999876655543211000 00000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYI 315 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (1012)
............+....|+|+|+.|+..+.. ..+...|+..... ...+........+..+.+..++.+++...
T Consensus 217 -~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d----~~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 217 -MCRQTFTGHESDINAICFFPNGNAFATGSDD----ATCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp -SEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred -eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC----CcEEEEECCCCcE--EEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 0000000001234444689999988776643 3466677765431 11111111111233333333234444444
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEE
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYS 358 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~ 358 (1012)
.+ ..+.+|++.+++....+......+..+.++||+..|+-.
T Consensus 290 ~d--~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 290 DD--FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp TT--SEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred CC--CeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence 44 357888987776655555445567788899998866543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0032 Score=71.11 Aligned_cols=189 Identities=12% Similarity=0.094 Sum_probs=102.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee---ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV---LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSK 233 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t---~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~ 233 (1012)
..+..+.|+|||+.++++.+.+| .|+++|+++++..... ........++|+|||+.|+....+....-. +..
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw-d~~ 206 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDN----VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI-EPR 206 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTS----CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE-ETT
T ss_pred CeEEEEEECcCCCCEEEEEcCCC----EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEE-eCC
Confidence 46788999999976666666555 6899999998865432 123346789999999988877654211000 000
Q ss_pred CCceEEEEe-ecc-ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEE
Q psy1288 234 KNRSSAYHL-TVN-VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLI 311 (1012)
Q Consensus 234 ~~~~l~~~~-~~~-~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 311 (1012)
. .+..... ... ...+....|+++|..|+...+. ..+..|...|+.+.... ...........+.......+++.++
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 207 K-GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR-MSERQVALWDTKHLEEP-LSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp T-TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT-TCCEEEEEEETTBCSSC-SEEEECCCCSSCEEEEEETTTTEEE
T ss_pred C-CceeeeeccCCCCCcceEEEEcCCCcEEEEeccC-CCCceEEEEcCccccCC-ceEEeccCCCceeEEEEcCCCCEEE
Confidence 0 1111111 000 0112334588887755554322 23567888888765421 1111112222233333344545666
Q ss_pred EEEEcCceEEEEEEecCCCce-eeeecC--CceEEEeecccccCcEE
Q psy1288 312 LSYIHHVKNVMHLHDLASGKH-LYTFPL--DVGTIVGFSGKKKYSEI 355 (1012)
Q Consensus 312 ~~~~~~g~~~l~~~dl~~G~~-~~~l~~--~~~~v~~~~~spdg~~l 355 (1012)
+....++ .|.+|++.+++. ...+.. ....+..+.|+|++..+
T Consensus 284 ~~g~~dg--~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~ 328 (402)
T 2aq5_A 284 LCGKGDS--SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLE 328 (402)
T ss_dssp EEETTCS--CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred EEEcCCC--eEEEEEecCCCcceEeecccccCCcccceEEecccccc
Confidence 5554443 677788866652 222221 12345567788887653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.018 Score=64.90 Aligned_cols=213 Identities=16% Similarity=0.120 Sum_probs=106.4
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|++++-...+ +.-.|| +...++....+. ++...+..+.|||||++|+-.. .+| .|+++|++
T Consensus 132 s~dg~~l~s~~~d---~~i~iw--d~~~~~~~~~~~------~h~~~v~~~~~~p~~~~l~s~s-~d~----~v~iwd~~ 195 (393)
T 1erj_A 132 SPDGKFLATGAED---RLIRIW--DIENRKIVMILQ------GHEQDIYSLDYFPSGDKLVSGS-GDR----TVRIWDLR 195 (393)
T ss_dssp CTTSSEEEEEETT---SCEEEE--ETTTTEEEEEEC------CCSSCEEEEEECTTSSEEEEEE-TTS----EEEEEETT
T ss_pred CCCCCEEEEEcCC---CeEEEE--ECCCCcEEEEEc------cCCCCEEEEEEcCCCCEEEEec-CCC----cEEEEECC
Confidence 4778876654322 234444 444444333332 1234578899999999987543 322 79999999
Q ss_pred CCceeceeecceeeeeeEEee-CCCeEEEEecCCCCCcccCCCCCceEEEEee-------ccccceeeeeeecCCCEEEE
Q psy1288 192 TGKEYPEVLHRLKFVSIAWTH-DHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT-------VNVAPITSQYITNEGPQFVF 263 (1012)
Q Consensus 192 tg~~~~~t~~~~~~~~~~WSp-DG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~-------~~~~~i~~~~~s~dg~~l~~ 263 (1012)
+++.............++|+| ||+.|+....+....-. +.... .++.... .....+....|+|+|+.|+.
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iw-d~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW-DSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEE-ETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred CCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEE-ECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 988654322233457789999 88877766544211000 00000 0110000 00022344468999988876
Q ss_pred EECCCCCCceEEEEeCCCCccc---------Cc-EEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCcee
Q psy1288 264 KTNKDAPNYRLITIDFDNFAES---------NW-KTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHL 333 (1012)
Q Consensus 264 ~tn~~~~~~~L~~~dl~~~~~~---------~~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~ 333 (1012)
.+. +..+...|+...... .. ..+..+ ...+. .+.+..++..+++...+ ..+.+|++.+|+..
T Consensus 274 ~s~----d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-~~~~~~~~~~l~sgs~D--~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 274 GSL----DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVL-SVATTQNDEYILSGSKD--RGVLFWDKKSGNPL 345 (393)
T ss_dssp EET----TSEEEEEEC---------------CEEEEEECC-SSCEE-EEEECGGGCEEEEEETT--SEEEEEETTTCCEE
T ss_pred EeC----CCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEE-EEEECCCCCEEEEEeCC--CeEEEEECCCCeEE
Confidence 653 234555665432100 00 111112 12222 23332223334444444 36788999878765
Q ss_pred eeecCCceEEEeecccc
Q psy1288 334 YTFPLDVGTIVGFSGKK 350 (1012)
Q Consensus 334 ~~l~~~~~~v~~~~~sp 350 (1012)
..+......+..+.+++
T Consensus 346 ~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 346 LMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEEECCSSCEEEEEECS
T ss_pred EEECCCCCCEEEEEecC
Confidence 55554444454555443
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=97.50 E-value=9.1e-05 Score=77.16 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=43.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+++.|+|+++|++|..||+.++.+++++++.. . ++.++++++.||.+...
T Consensus 182 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~gH~~~~~ 231 (251)
T 3dkr_A 182 LVKQPTFIGQAGQDELVDGRLAYQLRDALINA-A-------RVDFHWYDDAKHVITVN 231 (251)
T ss_dssp GCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-S-------CEEEEEETTCCSCTTTS
T ss_pred ccCCCEEEEecCCCcccChHHHHHHHHHhcCC-C-------CceEEEeCCCCcccccc
Confidence 56699999999999999999999999888773 3 78999999999988643
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=82.51 Aligned_cols=111 Identities=12% Similarity=-0.026 Sum_probs=72.5
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhH-HHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTK-IVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~-~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
...|++|++||..... ...|.... ..++...++.|+++|.+|.+..... .... ......+++...+++|.+...
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y~--~~~~--~~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTAYS--QASQ--NVRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSCHH--HHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCccH--HHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999965432 23454422 3345545899999999987643211 1000 000112355555666654333
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.+++.++|||+||.+++.++.++|+++..++...|
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldp 178 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDP 178 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCc
Confidence 4678999999999999999999999998888887665
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=1.5e-05 Score=85.97 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=39.2
Q ss_pred CCceEEEcccCCCCCC--------CcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVS--------PVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+|++|.||+.|.+++ ..++++|+++|+++|+ ++.|.++|+++|+...
T Consensus 196 ~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~L~~~g~-------~~~~~~~~g~~H~~~~ 251 (278)
T 2gzs_A 196 TKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGV-------NAVFWDFPNLGHGPMF 251 (278)
T ss_dssp TCEEEEEECCC-----------CHHHHHHHHHHHHHHTTC-------CEEEEECTTCCHHHHH
T ss_pred CCcEEEEecCccccccccchhhhhHHHHHHHHHHHHcCCC-------eeEEEEcCCCCccchh
Confidence 3799999999998854 7899999999999998 9999999999998643
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=7.6e-05 Score=76.52 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=37.0
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
++..|+|+++|++|..|| . +....+++.+. +++++++++.||.+..+
T Consensus 158 ~~~~P~l~i~g~~D~~~~-~---~~~~~~~~~~~-------~~~~~~~~~~~H~~~~~ 204 (223)
T 2o2g_A 158 HVKAPTLLIVGGYDLPVI-A---MNEDALEQLQT-------SKRLVIIPRASHLFEEP 204 (223)
T ss_dssp GCCSCEEEEEETTCHHHH-H---HHHHHHHHCCS-------SEEEEEETTCCTTCCST
T ss_pred cCCCCEEEEEccccCCCC-H---HHHHHHHhhCC-------CeEEEEeCCCCcccCCh
Confidence 555999999999999997 2 23455566555 88999999999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.015 Score=65.97 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=106.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..+.|||||++|+-.. .+| .|.++|+.+++.... .........++|+|||+.|+-.+.+....-. +....
T Consensus 151 ~~V~~v~~~~~~~~l~sgs-~D~----~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w-d~~~~ 224 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCS-ADM----TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW-EVQTG 224 (410)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTS----CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE-ETTTC
T ss_pred CcEEEEEEcCCCCEEEEEe-CCC----eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE-ECCCC
Confidence 4578899999999877543 333 688999998876542 2222346789999999987766544210000 00000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEec---------
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVA--------- 306 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~--------- 306 (1012)
. .+.........+....++++|..|+..+.. ..+...|+.+.+ ....+..... .+..+.+..
T Consensus 225 ~-~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D----~~v~vwd~~~~~---~~~~~~~h~~-~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 225 Y-CVKTFTGHREWVRMVRPNQDGTLIASCSND----QTVRVWVVATKE---CKAELREHRH-VVECISWAPESSYSSISE 295 (410)
T ss_dssp C-EEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCC---EEEEECCCSS-CEEEEEECCSCGGGGGGG
T ss_pred c-EEEEEeCCCccEEEEEECCCCCEEEEEcCC----CeEEEEECCCCc---eeeEecCCCc-eEEEEEEcCcccccchhh
Confidence 0 000000001223334578888877666543 345556665543 1111111111 122222211
Q ss_pred -----------CCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 307 -----------NDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 307 -----------~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+.+++....+ ..+.+||+.+|+....+......+..+.++|+++.|+-... -..|..+|+
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D--~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----D~~i~vwd~ 367 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRD--KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD----DKTLRVWDY 367 (410)
T ss_dssp CCSCC-------CCEEEEEETT--SEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET----TTEEEEECC
T ss_pred hccccccccCCCCCEEEEEeCC--CeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEEC
Confidence 02233444444 35888999777765555544455777889999887664432 246888888
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.043 Score=58.71 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=99.3
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCC-CCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHS-KKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~-~~~~ 236 (1012)
...++.|+|||+.|.++....+ .|+++|.+++ .............++|+|||+ |+............+. ....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~----~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQN----RTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGT----EEEEEETTSC-EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCE
T ss_pred cccCCeEeCCCCEEEEEeCCCC----EEEEEECCCC-eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcE
Confidence 3568999999998888765544 7999999988 544433333346789999997 4443321110000011 0111
Q ss_pred eEEEEeeccc--cceeeeeeecCCCEEEEEEC--------------CCCCCceEEEEeCCCCcccCcEEeeccCCCceee
Q psy1288 237 SSAYHLTVNV--APITSQYITNEGPQFVFKTN--------------KDAPNYRLITIDFDNFAESNWKTLIEENKDDVLD 300 (1012)
Q Consensus 237 ~l~~~~~~~~--~~i~~~~~s~dg~~l~~~tn--------------~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~ 300 (1012)
..+....... ..+....++++|+ ||+... .+.....|++++.+ +. ...+.... ....
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~--~~~~ 175 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDR--VKPN 175 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCC--SSEE
T ss_pred EEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCC--CCCc
Confidence 1111110000 1111234788875 666421 11124589999876 33 23332221 1223
Q ss_pred eeEEe-cCCEEEEEEEcCceEEEEEEecC-CCce---eeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 301 WATCV-ANDKLILSYIHHVKNVMHLHDLA-SGKH---LYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 301 ~~~~~-~~~~l~~~~~~~g~~~l~~~dl~-~G~~---~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+.+. +++.+ +... ....|+++++. +|+. ...+....+...++.++++|+ |++.. ...|+++|.
T Consensus 176 gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-----~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-----GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-----TTEEEEECT
T ss_pred cEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-----CCeEEEECC
Confidence 33333 43444 4333 23578888875 4543 223311122233566778886 66655 347999998
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0071 Score=67.58 Aligned_cols=195 Identities=10% Similarity=0.024 Sum_probs=107.0
Q ss_pred EeeeEEECCCC-cEEEEEEeCCCCceEEEEEEECCCCceeceee---cceeeeeeEEee-CCCeEEEEecCCCCCcccCC
Q psy1288 158 SLGSYSFSEDG-KTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL---HRLKFVSIAWTH-DHKGVFYSNQEPKSKSKKHS 232 (1012)
Q Consensus 158 ~i~~~~~SPDG-k~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~---~~~~~~~~~WSp-DG~~l~y~~~~~~~~g~~~~ 232 (1012)
.+..++||||| ++|+.... +| .|.++|+.+++...... .......+.|+| |++.|+....+....-. +.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw-d~ 148 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSK-GG----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR-DF 148 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEB-TS----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE-ET
T ss_pred CEEEEEECCCCCCEEEEEcC-CC----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE-EC
Confidence 47788999999 66665543 33 68999999887654221 334467899999 55655555443210000 00
Q ss_pred CCCceEEEEeec-cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEE
Q psy1288 233 KKNRSSAYHLTV-NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKL 310 (1012)
Q Consensus 233 ~~~~~l~~~~~~-~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l 310 (1012)
.......+.... ....+....|+|+++.|+..+. +..+...|+.... ...+..+. .. +..+.+. +++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~---~~~~~~h~-~~-v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 149 SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----TGRLLLLGLDGHE---IFKEKLHK-AK-VTHAEFNPRCDWL 219 (383)
T ss_dssp TSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET----TSEEEEEETTSCE---EEEEECSS-SC-EEEEEECSSCTTE
T ss_pred CCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC----CCCEEEEECCCCE---EEEeccCC-Cc-EEEEEECCCCCCE
Confidence 000000000000 0022444568999998877664 3567778874322 23333222 22 3333333 33325
Q ss_pred EEEEEcCceEEEEEEecCC----CceeeeecCCceEEEeecccc-cCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 311 ILSYIHHVKNVMHLHDLAS----GKHLYTFPLDVGTIVGFSGKK-KYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 311 ~~~~~~~g~~~l~~~dl~~----G~~~~~l~~~~~~v~~~~~sp-dg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
++....++ .+.+|++.+ +.....+. ....+..+.|+| +++.|+.... -..|..+|+.
T Consensus 220 l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~ 281 (383)
T 3ei3_B 220 MATSSVDA--TVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSY 281 (383)
T ss_dssp EEEEETTS--EEEEEEGGGCCSTTCEEEEEE-CSSCEEEEEECTTTSCEEEEEES----SSEEEEEETT
T ss_pred EEEEeCCC--EEEEEeCCCCCcccceEEEec-CCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECC
Confidence 55554443 678888865 33323332 245577888999 8887765543 2468889983
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.42 E-value=0.02 Score=63.89 Aligned_cols=200 Identities=10% Similarity=0.038 Sum_probs=110.0
Q ss_pred eEeeeEEECCC----C---cEEEEEEeCCCCceEEEEEEECCCCce------eceeec-----ceeeeeeEEe----eCC
Q psy1288 157 VSLGSYSFSED----G---KTLAYCLSSSGSDWTSMHFKDVATGKE------YPEVLH-----RLKFVSIAWT----HDH 214 (1012)
Q Consensus 157 ~~i~~~~~SPD----G---k~iAy~~~~~G~~~~~L~v~dl~tg~~------~~~t~~-----~~~~~~~~WS----pDG 214 (1012)
..+..+.|+|| | ++|+.... +| .|+++|+++++. ...... ......+.|+ ||+
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSF-SG----DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEET-TS----CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred CcEEEEEEecccccCCccccEEEEEcC-CC----CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 35788999999 9 88776543 33 688889888773 323222 2446789999 999
Q ss_pred Ce-EEEEecCCCCCcc-cCC------CCCce----EEEEe-----eccccceeeeeeecCCCEEEEEECCCCCCceEEEE
Q psy1288 215 KG-VFYSNQEPKSKSK-KHS------KKNRS----SAYHL-----TVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITI 277 (1012)
Q Consensus 215 ~~-l~y~~~~~~~~g~-~~~------~~~~~----l~~~~-----~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~ 277 (1012)
+. |+....+....-. ... ..... ..+.. ......+....|+|++ .|+..+ .+..+...
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~----~dg~i~i~ 212 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF----NNGTVQIS 212 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC----TTSEEEEE
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe----CCCcEEEE
Confidence 98 6666544211000 000 00000 01100 0001223344588988 444433 24568888
Q ss_pred eCCCCcccCcEEeec---c--CCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecC-------------
Q psy1288 278 DFDNFAESNWKTLIE---E--NKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPL------------- 338 (1012)
Q Consensus 278 dl~~~~~~~~~~l~~---~--~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~------------- 338 (1012)
|+.+... ...+.. + .... +..+.+ .+++.++....+++...|.+|++.+++....+..
T Consensus 213 d~~~~~~--~~~~~~~~~h~~~~~~-i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 213 ELSTLRP--LYNFESQHSMINNSNS-IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp ETTTTEE--EEEEECCC---CCCCC-EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred ECCCCce--eEEEeccccccccCCc-cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence 8876541 122222 1 0222 333333 3445666655544447899999987776666654
Q ss_pred CceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 339 DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 339 ~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....+..+.|+|+++.|+.... -..|..+|+
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~ 320 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGW----DGKLRFWDV 320 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEET----TSEEEEEET
T ss_pred cCCcEEEEEECCCCCEEEEEeC----CCeEEEEEc
Confidence 4455778889999987765542 246889998
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=7.6e-05 Score=79.16 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=43.6
Q ss_pred hHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 795 LLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+....+..... ++..|+|+++|++|..||+.++.++++++ - .++++++++.||.+.
T Consensus 194 ~~~~~~~~~~~-------~~~~P~l~i~g~~D~~~~~~~~~~~~~~~----~-------~~~~~~~~~~gH~~~ 249 (270)
T 3pfb_A 194 AQQLPIYEVSA-------QFTKPVCLIHGTDDTVVSPNASKKYDQIY----Q-------NSTLHLIEGADHCFS 249 (270)
T ss_dssp HHHCCHHHHHT-------TCCSCEEEEEETTCSSSCTHHHHHHHHHC----S-------SEEEEEETTCCTTCC
T ss_pred ccccCHHHHHh-------hCCccEEEEEcCCCCCCCHHHHHHHHHhC----C-------CCeEEEcCCCCcccC
Confidence 33444444555 67799999999999999999888876653 2 568999999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.027 Score=62.13 Aligned_cols=234 Identities=9% Similarity=0.032 Sum_probs=120.5
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCC--CcEEEEEEeCCCCceEEEEEEE
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSED--GKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPD--Gk~iAy~~~~~G~~~~~L~v~d 189 (1012)
+|+|.+++-...+ +.-.||-.....+.....+. .+...+..+.|||+ |++|+-.. .+| .|.++|
T Consensus 20 s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~~-~dg----~v~iwd 85 (379)
T 3jrp_A 20 DYYGKRLATCSSD---KTIKIFEVEGETHKLIDTLT------GHEGPVWRVDWAHPKFGTILASCS-YDG----KVLIWK 85 (379)
T ss_dssp CSSSSEEEEEETT---SCEEEEEEETTEEEEEEEEC------CCSSCEEEEEECCGGGCSEEEEEE-TTS----CEEEEE
T ss_pred cCCCCEEEEEECC---CcEEEEecCCCcceeeeEec------CCCCcEEEEEeCCCCCCCEEEEec-cCC----EEEEEE
Confidence 4788877755432 35677766532222222222 12345788999988 88777544 333 688999
Q ss_pred CCCCceec---eeecceeeeeeEEeeC--CCeEEEEecCCCCCcc-cCCC-CCceEEEEeeccccceeeeeeec------
Q psy1288 190 VATGKEYP---EVLHRLKFVSIAWTHD--HKGVFYSNQEPKSKSK-KHSK-KNRSSAYHLTVNVAPITSQYITN------ 256 (1012)
Q Consensus 190 l~tg~~~~---~t~~~~~~~~~~WSpD--G~~l~y~~~~~~~~g~-~~~~-~~~~l~~~~~~~~~~i~~~~~s~------ 256 (1012)
+.+++... ..........++|+|+ ++.|+....+....-. .... ........ .....+....|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE--CCTTCEEEEEECCCC----
T ss_pred cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec--CCCCceEEEEEcCcccccc
Confidence 98886322 2222334678999999 8877777654211000 0000 00111110 0112334445777
Q ss_pred -------CCCEEEEEECCCCCCceEEEEeCCCCcccCcE--EeeccCCCceeeeeEEecC---CEEEEEEEcCceEEEEE
Q psy1288 257 -------EGPQFVFKTNKDAPNYRLITIDFDNFAESNWK--TLIEENKDDVLDWATCVAN---DKLILSYIHHVKNVMHL 324 (1012)
Q Consensus 257 -------dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~--~l~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~l~~ 324 (1012)
++..|+..+.. ..|...|+..... .+. ..+..... .+..+.+... ..+++....++ .+.+
T Consensus 164 ~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~-~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg--~i~i 235 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGAD----NLVKIWKYNSDAQ-TYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDR--TCII 235 (379)
T ss_dssp ------CTTCEEEEEETT----SCEEEEEEETTTT-EEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTS--CEEE
T ss_pred ccccCCCCCCEEEEEeCC----CeEEEEEecCCCc-ceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCC--EEEE
Confidence 57777766643 3455566544321 111 11122222 2333444433 45555555554 4667
Q ss_pred EecCCCce---eeeecC--CceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 325 HDLASGKH---LYTFPL--DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 325 ~dl~~G~~---~~~l~~--~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
|++.++.. ...+.. ....+..+.|+|+++.|+..... ..+..+|+
T Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iw~~ 285 (379)
T 3jrp_A 236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD----NKVTLWKE 285 (379)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS----SSEEEEEE
T ss_pred EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC----CcEEEEeC
Confidence 77765531 122222 24456788999999877765442 23556665
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=97.39 E-value=3.2e-06 Score=98.86 Aligned_cols=195 Identities=11% Similarity=0.001 Sum_probs=108.0
Q ss_pred CCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCC-CCCCC--------ccccchhhhhHHHHH
Q psy1288 645 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAG-HGGGK--------PTTKQFPLTIPVIYF 715 (1012)
Q Consensus 645 ~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~g-Hg~~~--------~~~~~~~~~~~~~~f 715 (1012)
++|.|+++||+.=..-...........|... ++.+++.++.+-| .|+.. ..+..+.+....++|
T Consensus 96 ~~PviV~iHGGg~~~g~~~~~~~~~~~la~~-------g~~vvv~~nYRlg~~Gf~~~~~~~~~~~~n~gl~D~~~al~w 168 (489)
T 1qe3_A 96 NLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQ-------GEVIVVTLNYRLGPFGFLHLSSFDEAYSDNLGLLDQAAALKW 168 (489)
T ss_dssp SEEEEEEECCSTTTSCCTTSGGGCCHHHHHH-------HTCEEEEECCCCHHHHSCCCTTTCTTSCSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCccccCCCCCcccCHHHHHhc-------CCEEEEecCccCcccccCccccccccCCCCcchHHHHHHHHH
Confidence 4799999999731110100000112333333 5577888888733 23322 112236777888899
Q ss_pred HHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccc--cccchhh-----hcccccCCCCCCCC-CCCcccCCC
Q psy1288 716 YLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQ--KDDILIA-----EVLDMLKFNKFTIG-YFWESDYGS 785 (1012)
Q Consensus 716 l~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~--~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~g~ 785 (1012)
+.+......+ |+.++. |.|.| ++.++..+.. ...+|++ |+.++.+....... ..+...+|-
T Consensus 169 v~~~i~~fgg--Dp~~V~l~G~SaG-------g~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~~g~ 239 (489)
T 1qe3_A 169 VRENISAFGG--DPDNVTVFGESAG-------GMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQVLGI 239 (489)
T ss_dssp HHHHGGGGTE--EEEEEEEEEETHH-------HHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCC--CcceeEEEEechH-------HHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9988654333 344554 88888 3333221111 1233433 43333222110000 000012343
Q ss_pred CC-Chh------hhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEE
Q psy1288 786 PA-NSS------QFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIR 858 (1012)
Q Consensus 786 ~~-~~~------~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 858 (1012)
+. ..+ ..+.+...+++.+.. +..+|.+++|+..|.+|.+.+..+++++++.++| |+++-
T Consensus 240 ~~~~~~~Lr~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~v-------p~~~g 305 (489)
T 1qe3_A 240 NESQLDRLHTVAAEDLLKAADQLRIAE-------KENIFQLFFQPALDPKTLPEEPEKSIAEGAASGI-------PLLIG 305 (489)
T ss_dssp CTTCGGGGGTSCHHHHHHHHHHHHTST-------TCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTC-------CEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHHHHhhhcc-------ccccCCccceEeECCeecCcCHHHHHhcCCCCCC-------CEEEe
Confidence 31 110 012223334444333 4456789999999999999999999999998888 99999
Q ss_pred EeCCCCCCCCC
Q psy1288 859 IETKAGHGGGK 869 (1012)
Q Consensus 859 ~~~~~gH~~~~ 869 (1012)
.+++|||++..
T Consensus 306 ~~~~Eg~~~~~ 316 (489)
T 1qe3_A 306 TTRDEGYLFFT 316 (489)
T ss_dssp EETTGGGGTCC
T ss_pred eecchhHhhcc
Confidence 99999999875
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00019 Score=70.77 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=35.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|++||++|..||+.++.++++.+ ++ +++++ +.||.+.
T Consensus 117 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~---------~~~~~-~~~H~~~ 159 (176)
T 2qjw_A 117 AAAVPISIVHAWHDELIPAADVIAWAQAR---SA---------RLLLV-DDGHRLG 159 (176)
T ss_dssp CCSSCEEEEEETTCSSSCHHHHHHHHHHH---TC---------EEEEE-SSCTTCT
T ss_pred ccCCCEEEEEcCCCCccCHHHHHHHHHhC---Cc---------eEEEe-CCCcccc
Confidence 55699999999999999999999988776 23 56677 8999984
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00027 Score=81.04 Aligned_cols=110 Identities=11% Similarity=0.028 Sum_probs=69.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHH-HHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKI-VFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
...|.+|++||..... ...|..... .++...++.|+++|+||++.... ..... ......+|+...+++|.+...
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y--~~~~~--~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTSY--TQAAN--NVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSCH--HHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCcc--hHHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999965432 223443322 34443489999999998654221 11100 001112355555666653323
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+.+++.++|||+||.+++.++.+.|+ +..++...|
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldp 178 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDP 178 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCc
Confidence 467899999999999999999999998 888776655
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.024 Score=62.16 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=46.7
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEE--eeCCCeEEEEecC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAW--THDHKGVFYSNQE 223 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~W--SpDG~~l~y~~~~ 223 (1012)
..+..+.|||||++|+... .+| .|.++|+++++.............+.| +||++.|+....+
T Consensus 87 ~~v~~~~~~~~~~~l~s~~-~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 150 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTAS-CDK----TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150 (368)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETT
T ss_pred CCEEEEEECcCCCEEEEEc-CCC----cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCC
Confidence 4578899999999998543 333 799999999987664444445678999 8998877766544
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=97.34 E-value=4.7e-05 Score=87.22 Aligned_cols=52 Identities=12% Similarity=-0.081 Sum_probs=40.1
Q ss_pred hHhHcCCCCCC----CCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q psy1288 793 EYLLGYSPLHN----IQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETK 862 (1012)
Q Consensus 793 ~~~~~~Sp~~~----v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 862 (1012)
..+..+++... +. ++.+|+||+||++|..||+.++.+++. .+. +++++++++
T Consensus 336 ~~~~~~~~~~~~~~~~~-------~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~-------~~~l~~i~g 391 (415)
T 3mve_A 336 GQMAAWSLKVQGFLSSR-------KTKVPILAMSLEGDPVSPYSDNQMVAF----FST-------YGKAKKISS 391 (415)
T ss_dssp HHGGGGCTTTTTTTTSS-------CBSSCEEEEEETTCSSSCHHHHHHHHH----TBT-------TCEEEEECC
T ss_pred HHHhhcCcccccccccC-------CCCCCEEEEEeCCCCCCCHHHHHHHHH----hCC-------CceEEEecC
Confidence 34556666543 34 778999999999999999988887655 444 789999988
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00025 Score=72.70 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=38.5
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+|+|++||++|..||..++.+++++++ - .++++++++.||.+..
T Consensus 156 ~p~l~i~g~~D~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~H~~~~ 199 (220)
T 2fuk_A 156 AQWLVIQGDADEIVDPQAVYDWLETLE---Q-------QPTLVRMPDTSHFFHR 199 (220)
T ss_dssp SSEEEEEETTCSSSCHHHHHHHHTTCS---S-------CCEEEEETTCCTTCTT
T ss_pred CcEEEEECCCCcccCHHHHHHHHHHhC---c-------CCcEEEeCCCCceehh
Confidence 789999999999999999988887775 2 6789999999999865
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.02 Score=63.84 Aligned_cols=99 Identities=9% Similarity=-0.068 Sum_probs=61.6
Q ss_pred eCCEEEEEEEcCCCCee-EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC-----CCCceEEEEE
Q psy1288 114 QGDHYFFFHNTGLQNHS-VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS-----SGSDWTSMHF 187 (1012)
Q Consensus 114 dG~~~yy~~~~~~~~~~-~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~-----~G~~~~~L~v 187 (1012)
+..+ .|+.+.+...-. .++..|....+..--+.. |.. - .+.+||||+++..+... .|.....|.+
T Consensus 30 ~~~~-~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v------G~~-P-~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsv 100 (368)
T 1mda_H 30 ISRR-SHITLPAYFAGTTENWVSCAGCGVTLGHSLG------AFL-S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEV 100 (368)
T ss_dssp CTTE-EEEEECTTTCSSEEEEEEETTTTEEEEEEEE------CTT-C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred CCCe-EEEECCccCCccceEEEEECCCCeEEEEEeC------CCC-C-ceEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 3444 666665433222 788888766543322221 221 2 69999999998776531 2333468999
Q ss_pred EECCCCceece-eec-------ceeeeeeEEeeCCCeEEEEe
Q psy1288 188 KDVATGKEYPE-VLH-------RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 188 ~dl~tg~~~~~-t~~-------~~~~~~~~WSpDG~~l~y~~ 221 (1012)
+|+.+++.... ..+ ......+..||||+++|...
T Consensus 101 iD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred EECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEc
Confidence 99999987643 222 01235789999999887664
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=97.29 E-value=3.6e-05 Score=81.80 Aligned_cols=48 Identities=15% Similarity=0.067 Sum_probs=41.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++.+|+|+++|++|..||+.++.++++.++.. .++++++|+.||.+..
T Consensus 203 ~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~gH~~~~ 250 (270)
T 3rm3_A 203 RIVCPALIFVSDEDHVVPPGNADIIFQGISST---------EKEIVRLRNSYHVATL 250 (270)
T ss_dssp GCCSCEEEEEETTCSSSCTTHHHHHHHHSCCS---------SEEEEEESSCCSCGGG
T ss_pred hcCCCEEEEECCCCcccCHHHHHHHHHhcCCC---------cceEEEeCCCCccccc
Confidence 56699999999999999999999998877643 6799999999999754
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00088 Score=72.21 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=42.0
Q ss_pred CCCCceEEEcccCCCCCCCcch------------HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHS------------LKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||++|++|..||..+. .+....|++... .+.++++++.||.+.
T Consensus 236 ~~~~P~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~gH~~~ 296 (315)
T 4f0j_A 236 RLQMPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARRIP-------QATLVEFPDLGHTPQ 296 (315)
T ss_dssp GCCSCEEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHHST-------TEEEEEETTCCSCHH
T ss_pred cCCCCeEEEEecCCCcCccccccccccccccccchhhhhHHHhhcC-------CceEEEeCCCCcchh
Confidence 7779999999999999998776 677788877755 789999999999754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.023 Score=61.92 Aligned_cols=232 Identities=8% Similarity=-0.041 Sum_probs=118.7
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCc--eEEEcCCCCCCCCCceEeeeEEECCCCc-EEEEEEeCCCCceEEEEEE
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGE--ARVFLDPNNLSDDGTVSLGSYSFSEDGK-TLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~--~~~L~D~n~la~~g~~~i~~~~~SPDGk-~iAy~~~~~G~~~~~L~v~ 188 (1012)
+|+|.+++....+ +.-.||-....... ...+.. ....+..+.|||||+ +|+... .+| .|+++
T Consensus 20 s~~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~-~dg----~i~~w 84 (342)
T 1yfq_A 20 IPSKSLLLITSWD---GSLTVYKFDIQAKNVDLLQSLR-------YKHPLLCCNFIDNTDLQIYVGT-VQG----EILKV 84 (342)
T ss_dssp EGGGTEEEEEETT---SEEEEEEEETTTTEEEEEEEEE-------CSSCEEEEEEEESSSEEEEEEE-TTS----CEEEE
T ss_pred cCCCCEEEEEcCC---CeEEEEEeCCCCccccceeeee-------cCCceEEEEECCCCCcEEEEEc-CCC----eEEEE
Confidence 4778877665432 35566765543211 222222 234578899999999 776654 333 69999
Q ss_pred EC-CCCceeceee--cceeeeeeEEeeCCCeEEEEecCCCCCcc-cCC-CCCceEEEEeec----cccceeeeeeecCCC
Q psy1288 189 DV-ATGKEYPEVL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHS-KKNRSSAYHLTV----NVAPITSQYITNEGP 259 (1012)
Q Consensus 189 dl-~tg~~~~~t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~-~~~~~l~~~~~~----~~~~i~~~~~s~dg~ 259 (1012)
|+ ++++...... .......+.|+| ++.|+....+....-. ... .......-.... ....+....|++++
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR- 162 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence 99 9888754443 444467899999 8777766543210000 000 000000000000 00122233466655
Q ss_pred EEEEEECCCCCCceEEEEeCCC-CcccCcEEeeccCCCceeeeeEEec-CCEEEEEEEcCceEEEEEEecCCC------c
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDN-FAESNWKTLIEENKDDVLDWATCVA-NDKLILSYIHHVKNVMHLHDLASG------K 331 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~-~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~l~~~dl~~G------~ 331 (1012)
++..+. ...|...|+.. +.. ........... .+..+.+.. ++.+++....++. +.+|++..+ +
T Consensus 163 -l~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~--i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 163 -LIVGMN----NSQVQWFRLPLCEDD-NGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGR--VAVEFFDDQGDDYNSS 233 (342)
T ss_dssp -EEEEES----TTEEEEEESSCCTTC-CCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSE--EEEEECCTTCCSTTCT
T ss_pred -EEEEeC----CCeEEEEECCccccc-cceeeecCCCC-ceeEEEECCCCCCEEEEEecCCc--EEEEEEcCCCcccccc
Confidence 555443 34677888876 431 11222222222 233344432 2344444445554 555555433 3
Q ss_pred eeeeecCCc---------eEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 332 HLYTFPLDV---------GTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 332 ~~~~l~~~~---------~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....+.... +.+..+.++|+++.|+..... ..|..+|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~ 280 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD----GIISCWNL 280 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT----SCEEEEET
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCC----ceEEEEcC
Confidence 333333221 267788899999877654432 35888998
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.04 Score=60.64 Aligned_cols=143 Identities=8% Similarity=0.015 Sum_probs=75.0
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|.+++-... ++.-.||-...........+. .++...+..++|||||++||-... ++ .+.++|+.
T Consensus 25 sp~g~~las~~~---D~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp~g~~l~s~s~-D~----~v~iw~~~ 91 (345)
T 3fm0_A 25 NPAGTLLASCGG---DRRIRIWGTEGDSWICKSVLS-----EGHQRTVRKVAWSPCGNYLASASF-DA----TTCIWKKN 91 (345)
T ss_dssp CTTSSCEEEEET---TSCEEEEEEETTEEEEEEEEC-----SSCSSCEEEEEECTTSSEEEEEET-TS----CEEEEEEC
T ss_pred CCCCCEEEEEcC---CCeEEEEEcCCCcceeeeeec-----cccCCcEEEEEECCCCCEEEEEEC-CC----cEEEEEcc
Confidence 478887765443 235677765432111111111 123346889999999999886543 22 57778877
Q ss_pred CCceec-eee--cceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECC
Q psy1288 192 TGKEYP-EVL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNK 267 (1012)
Q Consensus 192 tg~~~~-~t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~ 267 (1012)
++.... .++ .......++|+|||+.|+-.+.+....-. .........+.........+....|+|+++.|+..+..
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 765322 122 22345789999999988776654221000 00000001110000011234445689999877776643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0093 Score=65.41 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=117.2
Q ss_pred eeeCCEEEEEEEc-CCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCC---CcEEEEEEeCCCCceEEEEE
Q psy1288 112 QRQGDHYFFFHNT-GLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSED---GKTLAYCLSSSGSDWTSMHF 187 (1012)
Q Consensus 112 ~~dG~~~yy~~~~-~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPD---Gk~iAy~~~~~G~~~~~L~v 187 (1012)
+|+|.+++..-.. .+++.-.||-.. +++...+.... +...+..+.|||| |++|+... .+| .|.+
T Consensus 27 ~p~~~~l~~~~s~~~~d~~v~iw~~~--~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~l~~~~-~dg----~i~i 94 (357)
T 3i2n_A 27 VPCSAKFVTMGNFARGTGVIQLYEIQ--HGDLKLLREIE-----KAKPIKCGTFGATSLQQRYLATGD-FGG----NLHI 94 (357)
T ss_dssp CTTSSEEEEEEC--CCCEEEEEEEEC--SSSEEEEEEEE-----ESSCEEEEECTTCCTTTCCEEEEE-TTS----CEEE
T ss_pred cCCCceEEEecCccCCCcEEEEEeCC--CCcccceeeec-----ccCcEEEEEEcCCCCCCceEEEec-CCC----eEEE
Confidence 4778776655432 112344555443 34433322210 2235788999999 67777654 333 6899
Q ss_pred EECCCCc-eec-eeecceeeeee------EEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeecc--ccceeee----
Q psy1288 188 KDVATGK-EYP-EVLHRLKFVSI------AWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVN--VAPITSQ---- 252 (1012)
Q Consensus 188 ~dl~tg~-~~~-~t~~~~~~~~~------~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~--~~~i~~~---- 252 (1012)
+|+.+++ ... ..........+ +|+||++.|+....+....-. ..........+....+ ...+...
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN 174 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence 9999887 322 22222223445 467899988776654321000 0000000000000000 0112111
Q ss_pred eeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe----cCCEEEEEEEcCceEEEEEEecC
Q psy1288 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV----ANDKLILSYIHHVKNVMHLHDLA 328 (1012)
Q Consensus 253 ~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~l~~~dl~ 328 (1012)
.|++++..|+..+. +..|...|+.++.. ...... .. .+..+.+. +++.++.. ..++ .+.+|++.
T Consensus 175 ~~~~~~~~l~~~~~----d~~i~i~d~~~~~~---~~~~~~-~~-~v~~~~~~~~~~~~~~l~~~-~~dg--~i~i~d~~ 242 (357)
T 3i2n_A 175 AYNQEERVVCAGYD----NGDIKLFDLRNMAL---RWETNI-KN-GVCSLEFDRKDISMNKLVAT-SLEG--KFHVFDMR 242 (357)
T ss_dssp CCC-CCCEEEEEET----TSEEEEEETTTTEE---EEEEEC-SS-CEEEEEESCSSSSCCEEEEE-ESTT--EEEEEEEE
T ss_pred ccCCCCCEEEEEcc----CCeEEEEECccCce---eeecCC-CC-ceEEEEcCCCCCCCCEEEEE-CCCC--eEEEEeCc
Confidence 26788888877764 35688888877541 222222 22 23333343 43455444 3443 57777875
Q ss_pred CCceeeeec-----CCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 329 SGKHLYTFP-----LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 329 ~G~~~~~l~-----~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++....+. .....+..+.++|++..++++.+.. ..+..+|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iwd~ 289 (357)
T 3i2n_A 243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA---GGLHLWKY 289 (357)
T ss_dssp EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT---SEEEEEEE
T ss_pred CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC---CcEEEeec
Confidence 554333222 3345577788999988555554432 35777776
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00017 Score=75.98 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=37.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+++.|+||+||++|..||+.++.++++.+. ..+++++++.||.+
T Consensus 187 ~i~~P~lii~G~~D~~v~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~ 230 (251)
T 2wtm_A 187 KYTKPVLIVHGDQDEAVPYEASVAFSKQYK-----------NCKLVTIPGDTHCY 230 (251)
T ss_dssp HCCSCEEEEEETTCSSSCHHHHHHHHHHSS-----------SEEEEEETTCCTTC
T ss_pred hcCCCEEEEEeCCCCCcChHHHHHHHHhCC-----------CcEEEEECCCCccc
Confidence 567999999999999999999888866541 56889999999988
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.24 E-value=0.017 Score=64.49 Aligned_cols=199 Identities=9% Similarity=-0.038 Sum_probs=104.1
Q ss_pred eEeeeEEEC----CCCcE-EEEEEeCCCCceEEEEEEECCC------Cceec---e-ee---------cceeeeeeEEee
Q psy1288 157 VSLGSYSFS----EDGKT-LAYCLSSSGSDWTSMHFKDVAT------GKEYP---E-VL---------HRLKFVSIAWTH 212 (1012)
Q Consensus 157 ~~i~~~~~S----PDGk~-iAy~~~~~G~~~~~L~v~dl~t------g~~~~---~-t~---------~~~~~~~~~WSp 212 (1012)
..+..+.|+ |||++ |+.. ..+| .|+++|+.+ ++... . .+ .......+.|+|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVAT-DVKG----TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEE-ETTS----CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred CcEEEEEEeeccCCCCceEEEEE-eCCC----cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC
Confidence 467889999 99999 5554 4444 688888877 44322 0 11 123357899999
Q ss_pred CCCeEEEEecCCCCCcccCCCCCceEEEEeec---c---ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccC
Q psy1288 213 DHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV---N---VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESN 286 (1012)
Q Consensus 213 DG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~---~---~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~ 286 (1012)
|| .|+....+....- -+... .+.+..... . ...+....|+|+++.|+..+.. .....|...|+.+++.
T Consensus 197 ~~-~l~~~~~dg~i~i-~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d-~~~g~i~i~d~~~~~~-- 270 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQI-SELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-NSFGCITLYETEFGER-- 270 (397)
T ss_dssp TS-EEEEECTTSEEEE-EETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-TTEEEEEEEETTTCCE--
T ss_pred Cc-eEEEEeCCCcEEE-EECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEecC-CCCceEEEEECCCCcc--
Confidence 99 5555443321000 00000 111111111 1 2334455689999988776642 1115788888876541
Q ss_pred cEEeecc------------CCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeeec------CC--------
Q psy1288 287 WKTLIEE------------NKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFP------LD-------- 339 (1012)
Q Consensus 287 ~~~l~~~------------~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~------~~-------- 339 (1012)
...+... ... .+..+.+. +++.|+ ....+ ..|.+|++.+++....+. ..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLC-SAGWD--GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp EEEECBC--------CCBSBSS-CEEEEEECSSSSEEE-EEETT--SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred cceeccCcccccccccccccCC-cEEEEEECCCCCEEE-EEeCC--CeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 1222210 222 23333333 434444 33333 468889998777666665 22
Q ss_pred -------ceEEEeecccccCc---------EEEEEecCCCCCcEEEEEeC
Q psy1288 340 -------VGTIVGFSGKKKYS---------EIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 340 -------~~~v~~~~~spdg~---------~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+..+.|+|+++ .++++.+. -..|..+|+
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---dg~i~iw~~ 393 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---DRSIRWFRE 393 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET---TTEEEEEEE
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecC---CCcEEEEEc
Confidence 45577888999973 23333332 235667776
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00088 Score=62.69 Aligned_cols=97 Identities=10% Similarity=-0.040 Sum_probs=61.0
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
..+|.++.+... ++.|.||++| +... .|... ++ ++|.|+.+|.||.|..... ..
T Consensus 8 ~~~g~~~~~~~~--------g~~~~vv~~H-~~~~----~~~~~----l~-~~~~v~~~d~~G~G~s~~~--------~~ 61 (131)
T 2dst_A 8 HLYGLNLVFDRV--------GKGPPVLLVA-EEAS----RWPEA----LP-EGYAFYLLDLPGYGRTEGP--------RM 61 (131)
T ss_dssp EETTEEEEEEEE--------CCSSEEEEES-SSGG----GCCSC----CC-TTSEEEEECCTTSTTCCCC--------CC
T ss_pred EECCEEEEEEEc--------CCCCeEEEEc-CCHH----HHHHH----Hh-CCcEEEEECCCCCCCCCCC--------CC
Confidence 346777654432 1246789999 2211 23222 55 4699999999997753211 00
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCc
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDL 536 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~ 536 (1012)
. ++++...+..+++.- +.+++.++|+|+||.++..++.++|.+
T Consensus 62 -~-~~~~~~~~~~~~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~p~l 104 (131)
T 2dst_A 62 -A-PEELAHFVAGFAVMM--NLGAPWVLLRGLGLALGPHLEALGLRA 104 (131)
T ss_dssp -C-HHHHHHHHHHHHHHT--TCCSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred -C-HHHHHHHHHHHHHHc--CCCccEEEEEChHHHHHHHHHhcCCcE
Confidence 1 455555554444432 346899999999999999999988853
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00053 Score=75.69 Aligned_cols=107 Identities=12% Similarity=0.002 Sum_probs=71.2
Q ss_pred CcEEEEEcCCCCCC--------CCCCc----ChhHHHHHHhCCeE---EEEEcCCCCCCCchhHHhhhhcCCCcchHhHH
Q psy1288 432 NPCILYGYGGFAVS--------LQPGF----SVTKIVFLRDFNGI---YAIPNIRGGGEYGERWHDGGRLLNKQNVFDDF 496 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~--------~~~~~----~~~~~~~l~~~G~~---v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~ 496 (1012)
.+.||++||..... ....| .. +...|.++|+. |+.+|++|.+.... .. .........+++
T Consensus 40 ~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~-l~~~L~~~Gy~~~~V~~~D~~g~G~S~~---~~-~~~~~~~~~~~l 114 (342)
T 2x5x_A 40 KTPVIFIHGNGDNAISFDMPPGNVSGYGTPARS-VYAELKARGYNDCEIFGVTYLSSSEQGS---AQ-YNYHSSTKYAII 114 (342)
T ss_dssp SCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSC-HHHHHHHTTCCTTSEEEECCSCHHHHTC---GG-GCCBCHHHHHHH
T ss_pred CCeEEEECCcCCCcccccccccccccccccHHH-HHHHHHhCCCCCCeEEEEeCCCCCccCC---cc-ccCCHHHHHHHH
Confidence 34588899976532 12234 43 35566667998 99999998642100 00 011122335667
Q ss_pred HHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 497 QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 497 ~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
.+.++.+.+.. ..+++.++|||+||.++..++.++ |++++.+|...+
T Consensus 115 ~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~ 163 (342)
T 2x5x_A 115 KTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAG 163 (342)
T ss_dssp HHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESC
T ss_pred HHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECC
Confidence 77777766542 346899999999999999998887 889999998876
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.039 Score=59.47 Aligned_cols=196 Identities=8% Similarity=0.010 Sum_probs=102.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
.+..++|||||++|+-... +| .|.++|+++++.... ...........|+||++.|+-.+.+....-. +.....
T Consensus 15 ~V~~~~fsp~~~~l~s~~~-dg----~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw-d~~~~~ 88 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLY-SG----RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF-NYNTGE 88 (304)
T ss_dssp CEEEEEECSSSSEEEEEET-TS----EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE-ETTTCC
T ss_pred ceEEEEECCCCCEEEEEcC-CC----cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE-ECCCCc
Confidence 5788999999999885543 33 799999999876442 2223335678999999988776654211000 000001
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEec-CCEEEEEEE
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVA-NDKLILSYI 315 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~ 315 (1012)
.+ ..-......+....|+|+++.|+..+.. ..+...|+.++. .....+...... +..+.+.. +..++++..
T Consensus 89 ~~-~~~~~h~~~v~~~~~~~~~~~l~sgs~D----~~v~lWd~~~~~--~~~~~~~~h~~~-v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 89 KV-VDFEAHPDYIRSIAVHPTKPYVLSGSDD----LTVKLWNWENNW--ALEQTFEGHEHF-VMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EE-EEEECCSSCEEEEEECSSSSEEEEEETT----SCEEEEEGGGTT--EEEEEECCCCSC-EEEEEECTTCTTEEEEEE
T ss_pred EE-EEEeCCCCcEEEEEEcCCCCEEEEECCC----CeEEEEECCCCc--chhhhhcccCCc-EEEEEECCCCCCEEEEEe
Confidence 11 0000011234444588999877665532 345666665432 112222222222 33333332 233444444
Q ss_pred cCceEEEEEEecCCCceeeeecCC-ceEEEeecccc--cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKK--KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~sp--dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++ .+.+|++..+.....+... ...+..+.+++ ++..++-. +. -..|..+|+
T Consensus 161 ~D~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-s~---D~~i~iWd~ 215 (304)
T 2ynn_A 161 LDR--TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SD---DLTIKIWDY 215 (304)
T ss_dssp TTS--EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE-ET---TSEEEEEET
T ss_pred CCC--eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE-cC---CCeEEEEeC
Confidence 443 5778888655443333322 22333444444 55554433 22 246888888
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00021 Score=75.36 Aligned_cols=48 Identities=10% Similarity=-0.051 Sum_probs=45.3
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+|+|++||++|+.||...+.++++.|++.|+ ++++..||+.||++..
T Consensus 183 ~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~-------~v~~~~y~g~gH~i~~ 230 (246)
T 4f21_A 183 GLPILVCHGTDDQVLPEVLGHDLSDKLKVSGF-------ANEYKHYVGMQHSVCM 230 (246)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTC-------CEEEEEESSCCSSCCH
T ss_pred CCchhhcccCCCCccCHHHHHHHHHHHHHCCC-------CeEEEEECCCCCccCH
Confidence 49999999999999999999999999999988 9999999999999853
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.061 Score=58.80 Aligned_cols=231 Identities=12% Similarity=0.024 Sum_probs=119.0
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceE-EEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEAR-VFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~-~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
.+++++|..-... ..|.+.+...++.. .+.. + .....+.+|||| + +|..+..+ ..|+++|++
T Consensus 51 ~~~~~lyv~~~~~----~~v~viD~~t~~~~~~i~~-------~-~~p~~i~~~~~g-~-lyv~~~~~---~~v~~iD~~ 113 (328)
T 3dsm_A 51 IRDGIGWIVVNNS----HVIFAIDINTFKEVGRITG-------F-TSPRYIHFLSDE-K-AYVTQIWD---YRIFIINPK 113 (328)
T ss_dssp EETTEEEEEEGGG----TEEEEEETTTCCEEEEEEC-------C-SSEEEEEEEETT-E-EEEEEBSC---SEEEEEETT
T ss_pred EECCEEEEEEcCC----CEEEEEECcccEEEEEcCC-------C-CCCcEEEEeCCC-e-EEEEECCC---CeEEEEECC
Confidence 4678877765432 35777777666542 3311 1 124567889999 4 46666322 279999999
Q ss_pred CCceec-eeecce-----eeeeeEEeeCCCeEEEEec-CCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEE
Q psy1288 192 TGKEYP-EVLHRL-----KFVSIAWTHDHKGVFYSNQ-EPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFK 264 (1012)
Q Consensus 192 tg~~~~-~t~~~~-----~~~~~~WSpDG~~l~y~~~-~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~ 264 (1012)
+++... ...... ....+++ +++.|+.+.. ........+... .++....... .......++++|+ +|+.
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g-~~p~~i~~~~dG~-l~v~ 188 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIG-IQPTSLVMDKYNK-MWTI 188 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECS-SCBCCCEECTTSE-EEEE
T ss_pred CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcC-CCccceEEcCCCC-EEEE
Confidence 988653 222220 2345666 5666655532 110000001110 1111111111 1111223677765 7777
Q ss_pred ECCCCC-------CceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceee--
Q psy1288 265 TNKDAP-------NYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLY-- 334 (1012)
Q Consensus 265 tn~~~~-------~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~-- 334 (1012)
++.+.. ...|+++|.++.+ ....+.-........+.+. +++.+++.. . .++++|+++++...
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t~~---v~~~~~~~~g~~p~~la~~~d~~~lyv~~---~--~v~~~d~~t~~~~~~~ 260 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAETFT---VEKQFKFKLGDWPSEVQLNGTRDTLYWIN---N--DIWRMPVEADRVPVRP 260 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTTTE---EEEEEECCTTCCCEEEEECTTSCEEEEES---S--SEEEEETTCSSCCSSC
T ss_pred ECCCccCCccccCCceEEEEECCCCe---EEEEEecCCCCCceeEEEecCCCEEEEEc---c--EEEEEECCCCceeeee
Confidence 654311 2689999987654 2211211111112233333 456676642 2 78899997766421
Q ss_pred eecCCceEEEeecccccCcEEEEEe-cCCCCCcEEEEEeC
Q psy1288 335 TFPLDVGTIVGFSGKKKYSEIFYSF-MSFLQPTIIFHCNI 373 (1012)
Q Consensus 335 ~l~~~~~~v~~~~~spdg~~l~~~~-ss~~~p~~l~~~d~ 373 (1012)
.++.......++.++|+++.|+++. ..+.....|+++|.
T Consensus 261 ~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 261 FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 1221123345678888777787774 23344678999998
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.20 E-value=0.13 Score=56.28 Aligned_cols=191 Identities=13% Similarity=0.068 Sum_probs=96.8
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..+.|||||++|+- .+.+| .|+++|+.+++.... .........++|+|||+.|+-...+....-. +....
T Consensus 77 ~~V~~~~~~~~~~~l~s-~s~D~----~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w-d~~~~ 150 (343)
T 2xzm_R 77 HFVSDLALSQENCFAIS-SSWDK----TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW-NILGE 150 (343)
T ss_dssp SCEEEEEECSSTTEEEE-EETTS----EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE-ESSSC
T ss_pred CceEEEEECCCCCEEEE-EcCCC----cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE-eccCC
Confidence 45788999999998874 33333 899999999886542 2223345789999999988766544211000 00000
Q ss_pred ceEEEEee---ccccceeeeeeecCC----------CEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeee
Q psy1288 236 RSSAYHLT---VNVAPITSQYITNEG----------PQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWA 302 (1012)
Q Consensus 236 ~~l~~~~~---~~~~~i~~~~~s~dg----------~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~ 302 (1012)
.. .... .....+....|+|++ ..|+..+. +..+...|..... ...+. .....+ ..+
T Consensus 151 -~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~---~~~~~-~h~~~v-~~~ 219 (343)
T 2xzm_R 151 -CK-FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW----DGRLKVWNTNFQI---RYTFK-AHESNV-NHL 219 (343)
T ss_dssp -EE-EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET----TSEEEEEETTTEE---EEEEE-CCSSCE-EEE
T ss_pred -ce-eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC----CCEEEEEcCCCce---eEEEc-Cccccc-eEE
Confidence 00 0000 000122233466665 44444432 2345556633211 11222 222222 333
Q ss_pred EE-ecCCEEEEEEEcCceEEEEEEecCC-CceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 303 TC-VANDKLILSYIHHVKNVMHLHDLAS-GKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 303 ~~-~~~~~l~~~~~~~g~~~l~~~dl~~-G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+ .+++.| +....+ ..+.+|++.. +.....+.. ...+..+.|+|++..++...+ ..+..+|+
T Consensus 220 ~~s~~g~~l-~sgs~d--g~v~iwd~~~~~~~~~~~~~-~~~v~~v~~sp~~~~la~~~d-----~~v~iw~~ 283 (343)
T 2xzm_R 220 SISPNGKYI-ATGGKD--KKLLIWDILNLTYPQREFDA-GSTINQIAFNPKLQWVAVGTD-----QGVKIFNL 283 (343)
T ss_dssp EECTTSSEE-EEEETT--CEEEEEESSCCSSCSEEEEC-SSCEEEEEECSSSCEEEEEES-----SCEEEEES
T ss_pred EECCCCCEE-EEEcCC--CeEEEEECCCCcccceeecC-CCcEEEEEECCCCCEEEEECC-----CCEEEEEe
Confidence 33 343444 444443 4678888833 322222222 234667889999876554322 23777787
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.018 Score=75.52 Aligned_cols=199 Identities=15% Similarity=0.160 Sum_probs=109.0
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
...+..++|||||++||... .+| .|.++|+.+++.... .........++|||||+.|+..+.++...-. +...
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~-~d~----~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw-d~~~ 688 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCG-ADK----TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW-DSAT 688 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTS----CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE-ETTT
T ss_pred cccEEEEEECCCCCEEEEEe-CCC----eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEE-ECCC
Confidence 34678899999999998654 333 699999999886542 2223346789999999988776644210000 0000
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 314 (1012)
. +.+.........+....|+++++..++.+.. .+..+...|+.++. ....+......+.......+++.++ +.
T Consensus 689 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~---~~~~~~~h~~~v~~~~~sp~~~~l~-s~ 761 (1249)
T 3sfz_A 689 G-KLVHTYDEHSEQVNCCHFTNKSNHLLLATGS--NDFFLKLWDLNQKE---CRNTMFGHTNSVNHCRFSPDDELLA-SC 761 (1249)
T ss_dssp C-CEEEEEECCSSCEEEEEECSSSSCCEEEEEE--TTSCEEEEETTSSS---EEEEECCCSSCEEEEEECSSTTEEE-EE
T ss_pred C-ceEEEEcCCCCcEEEEEEecCCCceEEEEEe--CCCeEEEEECCCcc---hhheecCCCCCEEEEEEecCCCEEE-EE
Confidence 0 1111101111234444588876554444321 23457777877654 1222222222332222233434444 33
Q ss_pred EcCceEEEEEEecCCCceeeeecCC-------------ceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 315 IHHVKNVMHLHDLASGKHLYTFPLD-------------VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G~~~~~l~~~-------------~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
..+ ..+.+|++.+++....+... ...+..+.|+|+++.++.... ..++.+|+.
T Consensus 762 s~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~~v~~~d~~ 827 (1249)
T 3sfz_A 762 SAD--GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----NKVLLFDIH 827 (1249)
T ss_dssp ESS--SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET-----TEEEEEETT
T ss_pred ECC--CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC-----CcEEEEEec
Confidence 333 35788888766544333211 113445678999998887653 468889983
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.034 Score=63.00 Aligned_cols=178 Identities=11% Similarity=0.011 Sum_probs=98.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..+.|||||++|+-... +| .|.++|+++++.... .........++|+|||+.|+-.+.+....-. +...
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~-Dg----~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw-d~~~- 181 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASE-DA----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW-DFQG- 181 (410)
T ss_dssp SCEEEEEECSSSSEEEEEES-SS----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE-ETTS-
T ss_pred CcEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE-eCCC-
Confidence 45778999999998775443 33 799999999886542 2222345789999999977666554321000 0000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYI 315 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (1012)
...+.........+....|+|+|+.|+..+. +..+...|+.++.. ...+..+. . .+..+....++.++++..
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~----D~~i~~wd~~~~~~--~~~~~~h~-~-~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQTGYC--VKTFTGHR-E-WVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCCE--EEEEECCS-S-CEEEEEECTTSSEEEEEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcE--EEEEeCCC-c-cEEEEEECCCCCEEEEEc
Confidence 0010000000123444458899988776653 34677778766541 22232222 2 223333333244444444
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeeccccc
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKK 351 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spd 351 (1012)
.++ .+.+|++.+++....+......+..+.|+|+
T Consensus 254 ~D~--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 254 NDQ--TVRVWVVATKECKAELREHRHVVECISWAPE 287 (410)
T ss_dssp TTS--CEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred CCC--eEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence 443 4777888777655555444445666677775
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.034 Score=63.19 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=103.4
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCce-----------e-ceeecc------------eeeeeeEEee
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKE-----------Y-PEVLHR------------LKFVSIAWTH 212 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~-----------~-~~t~~~------------~~~~~~~WSp 212 (1012)
..+..++|||||++||..... | .|.++|+.+++. . ...... .....++|+|
T Consensus 29 ~~V~~v~~s~~g~~la~g~~d-g----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKG-G----RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETT-S----EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred CcEEEEEECCCCCEEEEEcCC-C----eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 357889999999999876542 2 789999887762 1 111111 2357799999
Q ss_pred CC--CeEEEEecCCCCCcc-cCC-----------C-----------CCc--------eEEEE-e------eccccceeee
Q psy1288 213 DH--KGVFYSNQEPKSKSK-KHS-----------K-----------KNR--------SSAYH-L------TVNVAPITSQ 252 (1012)
Q Consensus 213 DG--~~l~y~~~~~~~~g~-~~~-----------~-----------~~~--------~l~~~-~------~~~~~~i~~~ 252 (1012)
++ ..|+..+.+....-. ... . ... ..... . ......+...
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 556655543211000 000 0 000 00000 0 0000223344
Q ss_pred eeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEe------eccCCCceeeeeEEecCC-EEEEEEEcCceEEEEEE
Q psy1288 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTL------IEENKDDVLDWATCVAND-KLILSYIHHVKNVMHLH 325 (1012)
Q Consensus 253 ~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~l~~~ 325 (1012)
.|+|+|+.|+.. . +..+...|+..... ....+ +..... .+..+.+...+ .+++....++ .|.+|
T Consensus 184 ~~~~~~~~l~s~-~----d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~s~~~dg--~i~iw 254 (447)
T 3dw8_B 184 SINSDYETYLSA-D----DLRINLWHLEITDR-SFNIVDIKPANMEELTE-VITAAEFHPNSCNTFVYSSSKG--TIRLC 254 (447)
T ss_dssp EECTTSSEEEEE-C----SSEEEEEETTEEEE-EEEEEECCCSSGGGCCC-CEEEEEECSSCTTEEEEEETTS--CEEEE
T ss_pred EEcCCCCEEEEe-C----CCeEEEEECCCCCc-eeeeeecccccccccCc-ceEEEEECCCCCcEEEEEeCCC--eEEEE
Confidence 689998877653 2 45677777763220 01111 111112 23333333322 4444444443 57888
Q ss_pred ecCCCce----eeeecCCce------------EEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 326 DLASGKH----LYTFPLDVG------------TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 326 dl~~G~~----~~~l~~~~~------------~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
++.+++. ...+..... .+..+.|+|++..|+... . ..+..+|+.
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~-~~v~iwd~~ 314 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD----Y-LSVKVWDLN 314 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE----S-SEEEEEETT
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee----C-CeEEEEeCC
Confidence 9876654 344444332 677889999998766443 2 578889983
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0091 Score=68.32 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=103.2
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEec-CCCCCcc-cCCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQ-EPKSKSK-KHSKKN 235 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~-~~~~~g~-~~~~~~ 235 (1012)
.+..+.|||||++|+.... +| .|+++|++++....+.........++|+|+++.++.+.. +....-. ......
T Consensus 211 ~~~~~~~~~~~~~l~~g~~-dg----~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~ 285 (435)
T 4e54_B 211 WFCSLDVSASSRMVVTGDN-VG----NVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG 285 (435)
T ss_dssp CCCCEEEETTTTEEEEECS-SS----BEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred cEEEEEECCCCCEEEEEeC-CC----cEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc
Confidence 3557899999999876432 22 789999987665444333444678999999987776653 2210000 000000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCC-----ceeeeeEEecCCEE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKD-----DVLDWATCVANDKL 310 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~l 310 (1012)
...+.........+....|+|+|..|+..+.. ..|...++..++. ...+..+... ..+......+++.+
T Consensus 286 ~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 286 KASFLYSLPHRHPVNAACFSPDGARLLTTDQK----SEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp SSCCSBCCBCSSCEEECCBCTTSSEEEEEESS----SCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred cceEEEeeeccccccceeECCCCCeeEEEcCC----CEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEE
Confidence 00000000000233344589999988776643 3466667665431 1222222111 01111111222334
Q ss_pred EEEEEcCc---------eEEEEEEecCCCceeeeecCC-ceEEEee-cccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 311 ILSYIHHV---------KNVMHLHDLASGKHLYTFPLD-VGTIVGF-SGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 311 ~~~~~~~g---------~~~l~~~dl~~G~~~~~l~~~-~~~v~~~-~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++....++ ...|.+|+..+|+....+..+ ...+..+ .|+|+|..|+- .+. ..|.++|+
T Consensus 360 ~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las-g~d----~~i~iW~~ 428 (435)
T 4e54_B 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS-AMG----YHILIWSQ 428 (435)
T ss_dssp EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE-ECS----SEEEECCC
T ss_pred EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE-EcC----CcEEEEEC
Confidence 44333222 134788998888765555433 2233333 57899986653 222 35888888
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=97.16 E-value=0.018 Score=62.65 Aligned_cols=199 Identities=8% Similarity=0.008 Sum_probs=102.0
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec----eee--cceeeeeeEEeeCCCeEEEEecCCCCCcc
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP----EVL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSK 229 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~----~t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~ 229 (1012)
...+..++||||+..++++.+.+| .|.++|+.+++... .++ .......+.|+|||+.|+-...+....-.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~----~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDK----TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTS----CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCC----eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 446889999999655555666554 68899987765321 111 12335789999999988766543210000
Q ss_pred cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cC-
Q psy1288 230 KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-AN- 307 (1012)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~- 307 (1012)
+.... .................+++++..|+..+.. ..+...++..... ...........+....+. ++
T Consensus 114 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d----~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 114 -DLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD----KTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp -ETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETT----SCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSS
T ss_pred -eeccc-ceeeeecCCCCceeEEEEeecCccceeecCC----CeEEEEEeCCCce---EEEEeccccCcccceEEccCCC
Confidence 00000 0000000000112233466777766655432 2344555543320 111111111122222221 11
Q ss_pred CEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 308 DKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 308 ~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+++....+ ..+.+|++.+++....+......+..+.++|+++.|+.... -..+..+|+
T Consensus 185 ~~~~~s~~~d--~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~ 244 (340)
T 4aow_A 185 NPIIVSCGWD--KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDL 244 (340)
T ss_dssp SCEEEEEETT--SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEET
T ss_pred CcEEEEEcCC--CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEe
Confidence 2344444333 34778898777665555544556778889999987665432 246888888
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.032 Score=62.37 Aligned_cols=189 Identities=11% Similarity=0.023 Sum_probs=101.9
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+..+.|||||++|+-. +.+| .|.++|+.+++.... ..........+|+|||+.|+-...+..
T Consensus 67 ~~V~~~~~sp~~~~l~s~-s~D~----~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~---------- 131 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSA-SQDG----RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA---------- 131 (380)
T ss_dssp SCEEEEEECTTSSCEEEE-ETTS----EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC----------
T ss_pred cEEEEEEEcCCCCEEEEE-eCCC----eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc----------
Confidence 457889999999988744 3333 899999998876432 222223467899999998876544321
Q ss_pred ceEEEEee--------------cc-ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEee-----ccCC
Q psy1288 236 RSSAYHLT--------------VN-VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLI-----EENK 295 (1012)
Q Consensus 236 ~~l~~~~~--------------~~-~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~-----~~~~ 295 (1012)
..++-... .+ ...+....|.|+++..++.... ...+...|+.++.. ...+ ....
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~---D~~i~~wd~~~~~~---~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG---DQTCVLWDVTTGQR---ISIFGSEFPSGHT 205 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECT---TSCEEEECTTTCCE---EEEECCCSSSSCC
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECC---CCcEEEEEcCCCcE---EEEeecccCCCCc
Confidence 11110000 00 0112223466765554454433 34566677766541 1111 1111
Q ss_pred CceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCC-CceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 296 DDVLDWATC-VANDKLILSYIHHVKNVMHLHDLAS-GKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 296 ~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~-G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+ ....+ ..+..++++...++ .+.+||+.. ++....+....+.+..+.|+|+++.++-... -..+..+|+
T Consensus 206 ~~v-~~~~~~~~~~~~l~sgs~D~--~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~lwd~ 278 (380)
T 3iz6_a 206 ADV-LSLSINSLNANMFISGSCDT--TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGTCRLFDM 278 (380)
T ss_dssp SCE-EEEEECSSSCCEEEEEETTS--CEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----SSCEEEEET
T ss_pred cCe-EEEEeecCCCCEEEEEECCC--eEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----CCeEEEEEC
Confidence 122 22222 11234445544444 567788853 3444444444455667889999987654332 235888898
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.21 Score=53.71 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=59.8
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECC--CCcEEEEEEeCCCCceEEEEEEE
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSE--DGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SP--DGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
+|+|.+++-...+ +.-.||-........+.+.... ++...+..++|+| ||++|+.... +| .|.++|
T Consensus 20 ~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~d~~~l~s~~~-dg----~v~vwd 87 (351)
T 3f3f_A 20 DFYGRHVATCSSD---QHIKVFKLDKDTSNWELSDSWR----AHDSSIVAIDWASPEYGRIIASASY-DK----TVKLWE 87 (351)
T ss_dssp CSSSSEEEEEETT---SEEEEEEECSSSCCEEEEEEEE----CCSSCEEEEEECCGGGCSEEEEEET-TS----CEEEEE
T ss_pred cCCCCEEEEeeCC---CeEEEEECCCCCCcceecceec----cCCCcEEEEEEcCCCCCCEEEEEcC-CC----eEEEEe
Confidence 3678876654322 3566776654333323321110 1234678899999 6888876543 33 688999
Q ss_pred CCCCce---------ec-eeecceeeeeeEEeeC--CCeEEEEecC
Q psy1288 190 VATGKE---------YP-EVLHRLKFVSIAWTHD--HKGVFYSNQE 223 (1012)
Q Consensus 190 l~tg~~---------~~-~t~~~~~~~~~~WSpD--G~~l~y~~~~ 223 (1012)
+.+++. .. ..........+.|+|| ++.|+....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 887642 11 1122334578999999 8887776644
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.064 Score=63.48 Aligned_cols=236 Identities=12% Similarity=0.113 Sum_probs=120.8
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
.+..|.+.++|+..... ..|++.+...++...-+.. +. ....+.+||||+++.. .+.+| .|.++|
T Consensus 160 ~~~~d~~~~~~V~~~~~---~~V~viD~~t~~v~~~i~~------g~-~p~~v~~SpDGr~lyv-~~~dg----~V~viD 224 (567)
T 1qks_A 160 MNDWDLENLFSVTLRDA---GQIALIDGSTYEIKTVLDT------GY-AVHISRLSASGRYLFV-IGRDG----KVNMID 224 (567)
T ss_dssp CSCCCGGGEEEEEETTT---TEEEEEETTTCCEEEEEEC------SS-CEEEEEECTTSCEEEE-EETTS----EEEEEE
T ss_pred ccccCCCceEEEEeCCC---CeEEEEECCCCeEEEEEeC------CC-CccceEECCCCCEEEE-EcCCC----eEEEEE
Confidence 34455455666666432 3677778766543322221 21 2347899999998654 44433 799999
Q ss_pred CC--CCceeceeecceeeeeeEEe----eCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc----------c-ceeee
Q psy1288 190 VA--TGKEYPEVLHRLKFVSIAWT----HDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV----------A-PITSQ 252 (1012)
Q Consensus 190 l~--tg~~~~~t~~~~~~~~~~WS----pDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~----------~-~i~~~ 252 (1012)
+. +++.......+.....+++| |||++++.....+......+... .+++-..+... . .+...
T Consensus 225 ~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 225 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred CCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccccCCCceEEE
Confidence 96 66654322223334678999 79998877654321100011111 11111111100 0 11223
Q ss_pred eeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCc
Q psy1288 253 YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGK 331 (1012)
Q Consensus 253 ~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~ 331 (1012)
..++++..+++.. . ...+|..+|....+......+ .. ........+ .+++++++... +...|.++|+.+++
T Consensus 304 ~~s~~~~~~vv~~-~--~~g~v~~vd~~~~~~~~v~~i-~~--~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~k 375 (567)
T 1qks_A 304 LASHYRPEFIVNV-K--ETGKILLVDYTDLNNLKTTEI-SA--ERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGK 375 (567)
T ss_dssp EECSSSSEEEEEE-T--TTTEEEEEETTCSSEEEEEEE-EC--CSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTE
T ss_pred EEcCCCCEEEEEe-c--CCCeEEEEecCCCccceeeee-ec--cccccCceECCCCCEEEEEeC--CCCeEEEEECCCCc
Confidence 4567777666554 2 346788888765431011111 11 112222222 34455555443 34578899998887
Q ss_pred eeeeecC-C----ce-EEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 332 HLYTFPL-D----VG-TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 332 ~~~~l~~-~----~~-~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....++. . .+ .. .+ ++|+++.++++.+-. ...|.++|.
T Consensus 376 l~~~i~vgg~~Phpg~g~-~~-~~p~~g~v~~t~~~g--~~~Vsvid~ 419 (567)
T 1qks_A 376 LVAIEDTGGQTPHPGRGA-NF-VHPTFGPVWATSHMG--DDSVALIGT 419 (567)
T ss_dssp EEEEEECSSSSBCCTTCE-EE-EETTTEEEEEEEBSS--SSEEEEEEC
T ss_pred EEEEEeccCcCCCCccce-ee-ECCCCCcEEEeCCCC--CCeEEEecC
Confidence 6555544 1 11 11 12 367777777654322 235778887
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00028 Score=71.31 Aligned_cols=45 Identities=24% Similarity=0.198 Sum_probs=37.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|+++|++|..||+..+.++++.+ . +++++++++.||.+.
T Consensus 145 ~~~~p~l~i~g~~D~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~H~~~ 189 (207)
T 3bdi_A 145 KIRQKTLLVWGSKDHVVPIALSKEYASII----S-------GSRLEIVEGSGHPVY 189 (207)
T ss_dssp TCCSCEEEEEETTCTTTTHHHHHHHHHHS----T-------TCEEEEETTCCSCHH
T ss_pred hccCCEEEEEECCCCccchHHHHHHHHhc----C-------CceEEEeCCCCCCcc
Confidence 44599999999999999998888777665 2 568899999999853
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00041 Score=76.41 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=40.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+||++|++|..||+.++.++++.++.. .++++++++.||.+..
T Consensus 244 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~gH~~~~ 291 (342)
T 3hju_A 244 KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQ---------DKTLKIYEGAYHVLHK 291 (342)
T ss_dssp GCCSCEEEEEETTCSSSCHHHHHHHHHHCCCS---------SEEEEEETTCCSCGGG
T ss_pred hCCcCEEEEEeCCCcccChHHHHHHHHHcCCC---------CceEEEECCCCchhhc
Confidence 66799999999999999999888888777542 4689999999998753
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.039 Score=61.07 Aligned_cols=185 Identities=9% Similarity=0.066 Sum_probs=98.9
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEee--CCCeEEEEecCCCCCcccCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTH--DHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSp--DG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
.+....|+||+++|+-.. .+| .|.++|+++++...... .......+.|+| +|+.|+-.+.+....-. +...
T Consensus 156 ~v~~~~~~~~~~~l~t~s-~D~----~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w-d~~~ 229 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTAS-GDG----TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW-DMRS 229 (354)
T ss_dssp CEEEEEECSSSSEEEEEE-TTS----EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE-ETTT
T ss_pred cEEEEEEeCCCCEEEEEe-CCC----cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE-ECCC
Confidence 467889999999887443 333 79999999998754222 223345677877 46666555443211000 0000
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC-CceeeeeEEecCCEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK-DDVLDWATCVANDKLILS 313 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~ 313 (1012)
. +.+.........+....|+|+|+.|+..+.. ..+...|+.... ...+..... ......+.+..++.+++.
T Consensus 230 ~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D----~~v~lwd~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 230 G-QCVQAFETHESDVNSVRYYPSGDAFASGSDD----ATCRLYDLRADR---EVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp C-CEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTE---EEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred C-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEECCCCc---EEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 0 0000000011234444689999887766643 346666776543 111222111 111222333222333444
Q ss_pred EEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEE
Q psy1288 314 YIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYS 358 (1012)
Q Consensus 314 ~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~ 358 (1012)
...+ ..+.+|++.+++....+......+..+.|+||++.|+..
T Consensus 302 g~~d--~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 302 GYND--YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp EETT--SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EECC--CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEE
Confidence 3333 357888987777655555445667788999999876543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.22 Score=53.21 Aligned_cols=220 Identities=10% Similarity=0.042 Sum_probs=109.7
Q ss_pred eCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCC
Q psy1288 136 DSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215 (1012)
Q Consensus 136 ~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~ 215 (1012)
+...++...++... ++...+..+.|||||++||-... +| .|.++|+++++......... .....++++++
T Consensus 51 d~~tg~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~-Dg----~v~iw~~~~~~~~~~~~~h~-~~~~~~~~~~~ 120 (318)
T 4ggc_A 51 SASSGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTS-SA----EVQLWDVQQQKRLRNMTSHS-ARVGSLSWNSY 120 (318)
T ss_dssp ETTTCCEEEEEECC----STTCCEEEEEECTTSSEEEEEET-TS----EEEEEETTTTEEEEEEECCS-SCEEEEEEETT
T ss_pred ECCCCCEEEEEEec----CCCCeEEEEEECCCCCEEEEEEC-CC----cEEEeecCCceeEEEecCcc-ceEEEeecCCC
Confidence 55556555444321 12345889999999999985443 23 79999999998754322222 23356777887
Q ss_pred eEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccC-cEEeeccC
Q psy1288 216 GVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESN-WKTLIEEN 294 (1012)
Q Consensus 216 ~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~-~~~l~~~~ 294 (1012)
.|+-...+....-. ..................+....++++|+.|+..... ..+...|+.+++... ........
T Consensus 121 ~l~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~ 195 (318)
T 4ggc_A 121 ILSSGSRSGHIHHH-DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND----NLVNVWPSAPGEGGWVPLQTFTQH 195 (318)
T ss_dssp EEEEEETTSEEEEE-ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SCEEEEESSCBTTBSCCSEEECCC
T ss_pred EEEEEecCCceEee-ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC----cceeEEECCCCcccccceeeeccc
Confidence 66554433210000 0000000000000000222333577888877665532 346666776543111 11111112
Q ss_pred CCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 295 KDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+........+..++..........+.+|+...+........ ...+....++++++.+++...+ .-..|.++|+
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~--~d~~i~iwd~ 271 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGF--AQNQLVIWKY 271 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECT--TTCCEEEEET
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEc--CCCEEEEEEC
Confidence 12222222222323444444444445678888865544332222 2334456778888887765432 2346888898
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00016 Score=76.69 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=39.3
Q ss_pred CCCCceEEEcccCCCCCCCcc-hHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVH-SLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+||+||++|..||+.+ +.+++++ .+. +++++++++.||.+..
T Consensus 163 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~-------~~~~~~~~g~~H~~~~ 210 (258)
T 2fx5_A 163 RQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANV-------PVFWGERRYVSHFEPV 210 (258)
T ss_dssp CCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSS-------CEEEEEESSCCTTSST
T ss_pred cCCCCEEEEEcCCCcccCchhhHHHHHhc---cCC-------CeEEEEECCCCCcccc
Confidence 556999999999999999986 8887766 233 8899999999999754
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.047 Score=61.43 Aligned_cols=231 Identities=10% Similarity=0.056 Sum_probs=119.4
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|.+++....+ +.-.|| +...++....+. .+...+..+.| +++.|+.. +.+| .|+++|+.
T Consensus 143 s~~~~~l~~~~~d---g~i~iw--d~~~~~~~~~~~------~~~~~v~~~~~--~~~~l~~~-~~dg----~i~i~d~~ 204 (401)
T 4aez_A 143 SHDGSFLSVGLGN---GLVDIY--DVESQTKLRTMA------GHQARVGCLSW--NRHVLSSG-SRSG----AIHHHDVR 204 (401)
T ss_dssp CTTSSEEEEEETT---SCEEEE--ETTTCCEEEEEC------CCSSCEEEEEE--ETTEEEEE-ETTS----EEEEEETT
T ss_pred CCCCCEEEEECCC---CeEEEE--ECcCCeEEEEec------CCCCceEEEEE--CCCEEEEE-cCCC----CEEEEecc
Confidence 3677766654432 233444 443343332222 12234666677 56666544 3333 79999998
Q ss_pred CCce-ec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCC
Q psy1288 192 TGKE-YP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDA 269 (1012)
Q Consensus 192 tg~~-~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~ 269 (1012)
.+.. .. ..........+.|+|||+.|+....+....-. +.... ............+....|+|+++.+++.... .
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw-d~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g-s 281 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW-DARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGG-T 281 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE-ETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECC-T
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc-cCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecC-C
Confidence 5432 22 22233346789999999988777654211000 00000 1111110111234445689999888887641 1
Q ss_pred CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeee--ecCCceEEEee
Q psy1288 270 PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYT--FPLDVGTIVGF 346 (1012)
Q Consensus 270 ~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~--l~~~~~~v~~~ 346 (1012)
.+..|...|+.++. ....+... .. +..+.+ .+++.++.. .......+.+|++.+++.... +....+.+..+
T Consensus 282 ~d~~i~i~d~~~~~---~~~~~~~~-~~-v~~~~~s~~~~~l~~~-~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~ 355 (401)
T 4aez_A 282 MDKQIHFWNAATGA---RVNTVDAG-SQ-VTSLIWSPHSKEIMST-HGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS 355 (401)
T ss_dssp TTCEEEEEETTTCC---EEEEEECS-SC-EEEEEECSSSSEEEEE-ECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE
T ss_pred CCCEEEEEECCCCC---EEEEEeCC-Cc-EEEEEECCCCCeEEEE-eecCCCcEEEEecCCccceeEEEecCCCCCEEEE
Confidence 24568888887654 12222222 22 333333 343444443 221234677888866544333 22334456677
Q ss_pred cccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 347 SGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 347 ~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.|+|++..|+.... -..|..+|+
T Consensus 356 ~~s~dg~~l~s~~~----dg~i~iw~~ 378 (401)
T 4aez_A 356 ALSPDGRILSTAAS----DENLKFWRV 378 (401)
T ss_dssp EECTTSSEEEEECT----TSEEEEEEC
T ss_pred EECCCCCEEEEEeC----CCcEEEEEC
Confidence 89999987765432 246888888
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.064 Score=65.33 Aligned_cols=197 Identities=13% Similarity=0.093 Sum_probs=106.5
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
...+..++|||||++|+-.. .+| .|+++|+.+++..... ........++|+|||+.|+-.+.+....-. +...
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs-~Dg----~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw-d~~~ 503 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGS-WDG----ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW-NTLG 503 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTS----EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE-CTTS
T ss_pred CCcEEEEEECCCCCEEEEEe-CCC----cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE-ECCC
Confidence 34577899999999987543 333 8999999998765422 223346789999999988766654221000 0000
Q ss_pred CceEEEEeec--cccceeeeeeecCCC-EEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEE
Q psy1288 235 NRSSAYHLTV--NVAPITSQYITNEGP-QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLI 311 (1012)
Q Consensus 235 ~~~l~~~~~~--~~~~i~~~~~s~dg~-~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 311 (1012)
.......... ....+....|+|++. .+++.... +..|...|+.+.. ....+...... +..+.+..++.++
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---d~~v~vwd~~~~~---~~~~~~~h~~~-v~~v~~spdg~~l 576 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW---DKTVKVWNLSNCK---LRSTLAGHTGY-VSTVAVSPDGSLC 576 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTCC---EEEEECCCSSC-EEEEEECTTSSEE
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC---CCeEEEEECCCCc---EEEEEcCCCCC-EEEEEEeCCCCEE
Confidence 0000000000 002233445788774 23333332 2346667776544 22222222222 3333333324444
Q ss_pred EEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 312 LSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 312 ~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++...++ .|.+|++.+++....+.. ...+..+.++|++..++.... ..+.++|+
T Consensus 577 ~sg~~Dg--~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~ 630 (694)
T 3dm0_A 577 ASGGKDG--VVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATE-----HGIKIWDL 630 (694)
T ss_dssp EEEETTS--BCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEET-----TEEEEEET
T ss_pred EEEeCCC--eEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcC-----CCEEEEEC
Confidence 4444443 577889977765444432 234667788999876654432 24888898
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.042 Score=60.56 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=102.0
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc--eec-eeecceeeeeeEEeeC--CCeEEEEecCCCCCccc
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK--EYP-EVLHRLKFVSIAWTHD--HKGVFYSNQEPKSKSKK 230 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~--~~~-~t~~~~~~~~~~WSpD--G~~l~y~~~~~~~~g~~ 230 (1012)
...+..++|||||++||.... +| .|+++|++++. ... +.........++|+|+ ++.|+-...+....-.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw- 84 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSS-DK----TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW- 84 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEET-TS----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE-
T ss_pred cccEEEEEEcCCCCEEEEEEC-CC----cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE-
Confidence 346788999999999986643 23 57778876433 222 2222234578999988 7777665543210000
Q ss_pred CCCCCc-eEEEEeeccccceeeeeeecC--CCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe--
Q psy1288 231 HSKKNR-SSAYHLTVNVAPITSQYITNE--GPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-- 305 (1012)
Q Consensus 231 ~~~~~~-~l~~~~~~~~~~i~~~~~s~d--g~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-- 305 (1012)
+..... ............+....|+|+ ++.|+..+. +..+...|+..........+ ...... +..+.+.
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~-~~~~~~-v~~~~~~~~ 158 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS----DGKVSVVEFKENGTTSPIII-DAHAIG-VNSASWAPA 158 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TSEEEEEECCTTSCCCEEEE-ECCTTC-EEEEEECCC
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC----CCcEEEEecCCCCceeeEEe-cCCCCc-eEEEEEcCc
Confidence 000000 000000001133444568898 777777764 34677777766532111122 222222 2333332
Q ss_pred ------------cCCEEEEEEEcCceEEEEEEecCCCcee----eeecCCceEEEeeccccc---CcEEEEEecCCCCCc
Q psy1288 306 ------------ANDKLILSYIHHVKNVMHLHDLASGKHL----YTFPLDVGTIVGFSGKKK---YSEIFYSFMSFLQPT 366 (1012)
Q Consensus 306 ------------~~~~l~~~~~~~g~~~l~~~dl~~G~~~----~~l~~~~~~v~~~~~spd---g~~l~~~~ss~~~p~ 366 (1012)
+++.+ +....++ .|.+|++.+++.. ..+......+..+.|+|+ ++.++..... .
T Consensus 159 ~~~~~~~~~~~~~~~~l-~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d----g 231 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKF-VTGGADN--LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD----R 231 (379)
T ss_dssp C----------CTTCEE-EEEETTS--CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT----S
T ss_pred cccccccccCCCCCCEE-EEEeCCC--eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC----C
Confidence 23444 4444444 4677777554321 223333455778899999 5555443322 3
Q ss_pred EEEEEeC
Q psy1288 367 IIFHCNI 373 (1012)
Q Consensus 367 ~l~~~d~ 373 (1012)
.+..+|+
T Consensus 232 ~i~iwd~ 238 (379)
T 3jrp_A 232 TCIIWTQ 238 (379)
T ss_dssp CEEEEEE
T ss_pred EEEEEeC
Confidence 4777777
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=97.07 E-value=0.086 Score=58.54 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=53.6
Q ss_pred eeecCCCEEEEEECCCC-------CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEE
Q psy1288 253 YITNEGPQFVFKTNKDA-------PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLH 325 (1012)
Q Consensus 253 ~~s~dg~~l~~~tn~~~-------~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~ 325 (1012)
.+++|++++|+....+. ....+..+|+++.+. ...+ +-.. ........+++.|++.. . ..|.+|
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i-~~~~--p~~ia~spdg~~l~v~n---~-~~v~v~ 330 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARI-PGRD--ALSMTIDQQRNLMLTLD---G-GNVNVY 330 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEE-ECTT--CCEEEEETTTTEEEEEC---S-SCEEEE
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEE-ecCC--eeEEEECCCCCEEEEeC---C-CeEEEE
Confidence 57899999998764111 235799999887651 2222 2221 22223344656666443 2 678899
Q ss_pred ecCCC--ceeeeecCCceEEEeecccccCc
Q psy1288 326 DLASG--KHLYTFPLDVGTIVGFSGKKKYS 353 (1012)
Q Consensus 326 dl~~G--~~~~~l~~~~~~v~~~~~spdg~ 353 (1012)
|.+++ +....+.........+.++|||+
T Consensus 331 D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99888 76555522111223567788875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.06 E-value=0.087 Score=57.77 Aligned_cols=194 Identities=10% Similarity=0.088 Sum_probs=98.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee---ecceeeeeeEEeeCCC----------eEEEEecC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV---LHRLKFVSIAWTHDHK----------GVFYSNQE 223 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t---~~~~~~~~~~WSpDG~----------~l~y~~~~ 223 (1012)
..+..+.|||||++|+-.. .+| .|.++|+.+....... ........++|+|+++ .|+-...+
T Consensus 119 ~~v~~v~~sp~~~~l~s~~-~d~----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAG-AER----EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp SCEEEEEECSSTTEEEEEE-TTS----CEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEc-CCC----EEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC
Confidence 4578899999999987543 333 6889998754432211 1122346789999973 34433332
Q ss_pred CCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeE
Q psy1288 224 PKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWAT 303 (1012)
Q Consensus 224 ~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~ 303 (1012)
....-. +. ..............+....|+|+|+.|+..+. +..|...|+..... ....+ ... . .+..+.
T Consensus 194 ~~i~iw-d~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~----dg~v~iwd~~~~~~-~~~~~-~~~-~-~v~~v~ 262 (343)
T 2xzm_R 194 GRLKVW-NT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGK----DKKLLIWDILNLTY-PQREF-DAG-S-TINQIA 262 (343)
T ss_dssp SEEEEE-ET--TTEEEEEEECCSSCEEEEEECTTSSEEEEEET----TCEEEEEESSCCSS-CSEEE-ECS-S-CEEEEE
T ss_pred CEEEEE-cC--CCceeEEEcCccccceEEEECCCCCEEEEEcC----CCeEEEEECCCCcc-cceee-cCC-C-cEEEEE
Confidence 110000 00 00111110001123444568999998877663 34577777743221 11222 111 1 233333
Q ss_pred EecCCEEEEEEEcCceEEEEEEecCCCceee--eec-----------CCceEEEeecccccCcEEEEEecCCCCCcEEEE
Q psy1288 304 CVANDKLILSYIHHVKNVMHLHDLASGKHLY--TFP-----------LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFH 370 (1012)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~--~l~-----------~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~ 370 (1012)
+..+..++....++ .+.+|++.+++... .+. .....+..++|+|+++.|+..... ..|..
T Consensus 263 ~sp~~~~la~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D----g~v~~ 335 (343)
T 2xzm_R 263 FNPKLQWVAVGTDQ---GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD----GVIRT 335 (343)
T ss_dssp ECSSSCEEEEEESS---CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT----SEEEE
T ss_pred ECCCCCEEEEECCC---CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC----ceEEE
Confidence 33324444433332 37788886554322 222 112346678899999877655432 34666
Q ss_pred EeC
Q psy1288 371 CNI 373 (1012)
Q Consensus 371 ~d~ 373 (1012)
+|+
T Consensus 336 w~~ 338 (343)
T 2xzm_R 336 FSF 338 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.01 Score=64.24 Aligned_cols=65 Identities=11% Similarity=-0.077 Sum_probs=43.2
Q ss_pred CCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCC
Q psy1288 139 DGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215 (1012)
Q Consensus 139 ~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~ 215 (1012)
+...++|.+ +......+.|+|||+.|+|+-..++ .|+.++. +|+.............+.|++||+
T Consensus 34 ~~~~~~l~~-------~~~~~egp~~~~~g~~l~~~d~~~~----~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 34 DARLLTLYD-------QATWSEGPAWWEAQRTLVWSDLVGR----RVLGWRE-DGTVDVLLDATAFTNGNAVDAQQR 98 (305)
T ss_dssp TCCCEEEEC-------CCSSEEEEEEEGGGTEEEEEETTTT----EEEEEET-TSCEEEEEESCSCEEEEEECTTSC
T ss_pred CCceEEEec-------CCcCccCCeEeCCCCEEEEEECCCC----EEEEEeC-CCCEEEEeCCCCccceeeECCCCC
Confidence 345566665 3334567999999999988755443 6888898 455443333333346789999997
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.054 Score=60.33 Aligned_cols=197 Identities=11% Similarity=0.107 Sum_probs=104.0
Q ss_pred eeeEEECCC---CcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecC-CCCCcc-cCC
Q psy1288 159 LGSYSFSED---GKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQE-PKSKSK-KHS 232 (1012)
Q Consensus 159 i~~~~~SPD---Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~-~~~~g~-~~~ 232 (1012)
+....++|+ ++.++.... +| .|+++|+.+++.... .........++|+||++.++++... +...-. ...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~-~~----~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTR-GP----KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEES-SS----SEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred eeeeEeecCCCCCcEEEEEcC-CC----eEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 456677774 446666543 33 689999998875432 2223345789999999976655432 110000 000
Q ss_pred CCCceEEEEe-------------eccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeecc---CCC
Q psy1288 233 KKNRSSAYHL-------------TVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEE---NKD 296 (1012)
Q Consensus 233 ~~~~~l~~~~-------------~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~---~~~ 296 (1012)
.......+.. ......+....|+|+|+.|+..+.. ..+...|+.+++.. ...... ...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~--~~~~~~~~~~~~ 292 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD----NRMRLWNSSNGENT--LVNYGKVCNNSK 292 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCCBC--CCCCCCCCCCCS
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC----CeEEEEECCCCccc--eecccccccccc
Confidence 0000000000 0000223344689999988877643 45777777665411 000000 000
Q ss_pred ceeeeeE-EecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 297 DVLDWAT-CVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 297 ~~~~~~~-~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....... ...+..+++... + ..+.+|++.+++....+......+..+.|+|+++.|+..... ..|..+|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~--~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~ 363 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPY-G--STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD----CNILAWVP 363 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEE-T--TEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEEE
T ss_pred ccceeEEecCCCceEEEEec-C--CEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC----CeEEEEeC
Confidence 0111111 111133444333 2 478899998887766666555667788999999877654432 35777887
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00074 Score=74.46 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=43.5
Q ss_pred CCCceEEEcccCCCCCCC-----cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC-----CCCCC
Q psy1288 814 QYPATLLMTADHDDRVSP-----VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAG-----HGGGK 869 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-----H~~~~ 869 (1012)
++.|+||+||++|..||+ .++.+++++|++.|. .++++++|+.| |.+..
T Consensus 244 ~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~-------~~~~~~~~~~gi~G~~H~~~~ 302 (328)
T 1qlw_A 244 TSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGG-------KGQLMSLPALGVHGNSHMMMQ 302 (328)
T ss_dssp TTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTC-------CEEEEEGGGGTCCCCCTTGGG
T ss_pred cCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHhCC-------CceEEEcCCCCcCCCcccchh
Confidence 458999999999999998 899999999999877 89999999777 87653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0039 Score=69.45 Aligned_cols=199 Identities=8% Similarity=-0.028 Sum_probs=100.1
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc--eec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK--EYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSK 233 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~--~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~ 233 (1012)
.+..++|||||++||.... ...|+++|+.++. ... +.........++|+|||+.|+..+.+....-. ....
T Consensus 13 ~v~~~~~s~~g~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTA-----TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CCSCCEECSSSSEEECCCS-----SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred cEEEEEECCCCCEEEEecC-----CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 4678999999999886432 2368888988873 322 22223346789999999988777654321000 0000
Q ss_pred CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCccc-CcEEeeccCCCceeeeeEEecCCEEEE
Q psy1288 234 KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAES-NWKTLIEENKDDVLDWATCVANDKLIL 312 (1012)
Q Consensus 234 ~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~ 312 (1012)
...............+....|+|+++.|+..+.. ..+...++...+.. ....+...... .+..+.+..++.+++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA----RVISVCYFEQENDWWVSKHLKRPLRS-TILSLDWHPNNVLLA 162 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS----SCEEECCC-----CCCCEEECSSCCS-CEEEEEECTTSSEEE
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecC----CeEEEEEECCcccceeeeEeecccCC-CeEEEEEcCCCCEEE
Confidence 0000000000001234445689999988877643 34566666554310 01223221222 233333333233344
Q ss_pred EEEcCceEEEEEEecCCC------------------ceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 313 SYIHHVKNVMHLHDLASG------------------KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 313 ~~~~~g~~~l~~~dl~~G------------------~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....++ .+.+|++..+ +....+ ...+.+..+.|+|+++.|+..... ..|..+|+
T Consensus 163 ~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d----~~i~iwd~ 234 (377)
T 3dwl_C 163 AGCADR--KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD----SSVTIAYP 234 (377)
T ss_dssp EEESSS--CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT----TEEC-CEE
T ss_pred EEeCCC--EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC----CcEEEEEC
Confidence 444443 4666676322 111222 223446778899999876655432 35777787
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.041 Score=61.35 Aligned_cols=196 Identities=12% Similarity=0.095 Sum_probs=101.9
Q ss_pred eEeeeEEECC-CCcEEEEEEeCCCCceEEEEEEECCCCceeceee--------------cceeeeeeEEee-CCCeEEEE
Q psy1288 157 VSLGSYSFSE-DGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL--------------HRLKFVSIAWTH-DHKGVFYS 220 (1012)
Q Consensus 157 ~~i~~~~~SP-DGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~--------------~~~~~~~~~WSp-DG~~l~y~ 220 (1012)
..+..++||| ||++|+.... +| .|.++|+++++...... .......+.|+| +++.|+..
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGS-DG----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEET-TS----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcC-CC----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3577899999 9999887654 23 68999999887543211 233467899999 55555544
Q ss_pred ecCCCCCcccCCCCCceEEEEeeccccceeeeeeec---CCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCc
Q psy1288 221 NQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITN---EGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDD 297 (1012)
Q Consensus 221 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~---dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~ 297 (1012)
..+....-. +.... +....... ...+....+++ ++..++..+. +..+...|+.++.. ...+ ......
T Consensus 119 ~~d~~i~iw-d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~d~~~~~~--~~~~-~~~~~~ 188 (408)
T 4a11_B 119 SFDKTLKVW-DTNTL-QTADVFNF-EETVYSHHMSPVSTKHCLVAVGTR----GPKVQLCDLKSGSC--SHIL-QGHRQE 188 (408)
T ss_dssp ETTSEEEEE-ETTTT-EEEEEEEC-SSCEEEEEECSSCSSCCEEEEEES----SSSEEEEESSSSCC--CEEE-CCCCSC
T ss_pred eCCCeEEEe-eCCCC-ccceeccC-CCceeeeEeecCCCCCcEEEEEcC----CCeEEEEeCCCcce--eeee-cCCCCc
Confidence 433210000 00000 00000000 01122222444 4445655553 34577778766541 2223 222223
Q ss_pred eeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCc-eeeee---------------cCCceEEEeecccccCcEEEEEec
Q psy1288 298 VLDWATC-VANDKLILSYIHHVKNVMHLHDLASGK-HLYTF---------------PLDVGTIVGFSGKKKYSEIFYSFM 360 (1012)
Q Consensus 298 ~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~-~~~~l---------------~~~~~~v~~~~~spdg~~l~~~~s 360 (1012)
+ ..+.+ .+++.+++....++ .+.+|++.++. ....+ ......+..+.++|+++.++....
T Consensus 189 v-~~~~~~~~~~~ll~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 189 I-LAVSWSPRYDYILATASADS--RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp E-EEEEECSSCTTEEEEEETTS--CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred E-EEEEECCCCCcEEEEEcCCC--cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 3 33333 34344555555544 47778885543 11111 112345778889999988776553
Q ss_pred CCCCCcEEEEEeCC
Q psy1288 361 SFLQPTIIFHCNIP 374 (1012)
Q Consensus 361 s~~~p~~l~~~d~~ 374 (1012)
. ..+..+|+.
T Consensus 266 d----g~i~vwd~~ 275 (408)
T 4a11_B 266 D----NRMRLWNSS 275 (408)
T ss_dssp T----SCEEEEETT
T ss_pred C----CeEEEEECC
Confidence 3 358888883
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.17 Score=54.85 Aligned_cols=228 Identities=8% Similarity=0.031 Sum_probs=110.9
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+++|.+++-...+ +.-.|| +...++....+. ++...+..+.|+|||++|+-... +| .|.++|++
T Consensus 74 s~dg~~l~s~s~D---~~v~~w--d~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~s~-D~----~i~vwd~~ 137 (319)
T 3frx_A 74 TADGAYALSASWD---KTLRLW--DVATGETYQRFV------GHKSDVMSVDIDKKASMIISGSR-DK----TIKVWTIK 137 (319)
T ss_dssp CTTSSEEEEEETT---SEEEEE--ETTTTEEEEEEE------CCSSCEEEEEECTTSCEEEEEET-TS----CEEEEETT
T ss_pred CCCCCEEEEEeCC---CEEEEE--ECCCCCeeEEEc------cCCCcEEEEEEcCCCCEEEEEeC-CC----eEEEEECC
Confidence 3677766543322 334455 444443322222 12345788999999998875433 33 68889997
Q ss_pred CCceeceeecceeeeeeEEeeCCC------eEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEE
Q psy1288 192 TGKEYPEVLHRLKFVSIAWTHDHK------GVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKT 265 (1012)
Q Consensus 192 tg~~~~~t~~~~~~~~~~WSpDG~------~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~t 265 (1012)
+...............+.|+|+++ .|+-...+....-. +.. ..+...........+....|+|+|+.|+..+
T Consensus 138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w-d~~-~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW-NLN-QFQIEADFIGHNSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEE-ETT-TTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE-ECC-cchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence 654433222223346788888543 44433333210000 000 0011110000112344456899999877766
Q ss_pred CCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC------
Q psy1288 266 NKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD------ 339 (1012)
Q Consensus 266 n~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~------ 339 (1012)
. +..+...|+.+.+. ...+. .. ..+. .+.+..++.+++....+ .+.+++++.+.....+...
T Consensus 216 ~----dg~i~iwd~~~~~~--~~~~~-~~-~~v~-~~~~sp~~~~la~~~~~---~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 216 K----DGEIMLWNLAAKKA--MYTLS-AQ-DEVF-SLAFSPNRYWLAAATAT---GIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp T----TCEEEEEETTTTEE--EEEEE-CC-SCEE-EEEECSSSSEEEEEETT---EEEEEEETTEEEEEEECCCCTTCCG
T ss_pred C----CCeEEEEECCCCcE--EEEec-CC-CcEE-EEEEcCCCCEEEEEcCC---CcEEEEeCcCeeeeccCcccccccc
Confidence 3 34677778766541 12222 21 2232 23332223333333333 2566666444332222111
Q ss_pred --ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 340 --VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 340 --~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+..++|+|||+.|+..... ..|.++|+
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~D----g~i~vWd~ 315 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTD----NVIRVWQV 315 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETT----SCEEEEEE
T ss_pred CcCcceeEEEECCCCCEEEEeecC----ceEEEEEE
Confidence 2335578899999987755433 24666665
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.096 Score=57.24 Aligned_cols=62 Identities=11% Similarity=0.122 Sum_probs=45.2
Q ss_pred eEeeeEEECC-CCcEEEEEEeCCCCceEEEEEEECCCCceecee----ecceeeeeeEEeeCCCeEEEEecC
Q psy1288 157 VSLGSYSFSE-DGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV----LHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 157 ~~i~~~~~SP-DGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t----~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
..+..+.|+| ||+.|+.... +| .|+++|+.+++..... ........+.|+|||+.|+....+
T Consensus 116 ~~i~~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 182 (366)
T 3k26_A 116 NAINELKFHPRDPNLLLSVSK-DH----ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182 (366)
T ss_dssp SCEEEEEECSSCTTEEEEEET-TS----CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCCEEEEEeC-CC----eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence 4578899999 8888776543 33 6999999988765432 233346789999999988776644
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00028 Score=79.76 Aligned_cols=45 Identities=2% Similarity=-0.120 Sum_probs=33.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++.+|+|++||++|..+ +..+.+.+|++.+. +.+++++++++|++
T Consensus 263 ~i~~P~Lii~g~~D~~~---~~~~~~~~l~~~~~-------~~~~~~~~g~~H~~ 307 (383)
T 3d59_A 263 RIPQPLFFINSEYFQYP---ANIIKMKKCYSPDK-------ERKMITIRGSVHQN 307 (383)
T ss_dssp SCCSCEEEEEETTTCCH---HHHHHHHTTCCTTS-------CEEEEEETTCCGGG
T ss_pred cCCCCEEEEecccccch---hhHHHHHHHHhcCC-------ceEEEEeCCCcCCC
Confidence 45599999999999744 23333455555555 89999999999996
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0017 Score=69.20 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=40.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
++..|+||++|++|..||..++.+++..++.. .++++++++.||.+..
T Consensus 226 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~gH~~~~ 273 (303)
T 3pe6_A 226 KLTVPFLLLQGSADRLCDSKGAYLLMELAKSQ---------DKTLKIYEGAYHVLHK 273 (303)
T ss_dssp GCCSCEEEEEETTCSSBCHHHHHHHHHHCCCS---------SEEEEEETTCCSCGGG
T ss_pred cCCCCEEEEeeCCCCCCChHHHHHHHHhcccC---------CceEEEeCCCccceec
Confidence 56799999999999999999888888776532 4689999999998753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.088 Score=64.12 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=100.1
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee----cceeeeeeEEeeCCCe-EEEE-ecCCCCCccc
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL----HRLKFVSIAWTHDHKG-VFYS-NQEPKSKSKK 230 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~----~~~~~~~~~WSpDG~~-l~y~-~~~~~~~g~~ 230 (1012)
..+..++|||||++|+-.. .++ .|.++|+.++....... .......++|+|++.. ++++ +.+....-.
T Consensus 473 ~~v~~~~~s~~~~~l~s~s-~D~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vw- 546 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSAS-RDR----TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW- 546 (694)
T ss_dssp SCEEEEEECTTSSCEEEEE-TTS----CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE-
T ss_pred CCEEEEEEeCCCCEEEEEe-CCC----EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEE-
Confidence 3577899999999987543 333 68888986654332211 1122467899999842 3333 332110000
Q ss_pred CCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEE
Q psy1288 231 HSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKL 310 (1012)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 310 (1012)
+.. ..++..........+....|+|+|+.|+..+.. ..|...|+.++. .+..-.....+..+.+..++.+
T Consensus 547 d~~-~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D----g~i~iwd~~~~~-----~~~~~~~~~~v~~~~~sp~~~~ 616 (694)
T 3dm0_A 547 NLS-NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD----GVVLLWDLAEGK-----KLYSLEANSVIHALCFSPNRYW 616 (694)
T ss_dssp ETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT----SBCEEEETTTTE-----EEECCBCSSCEEEEEECSSSSE
T ss_pred ECC-CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCc-----eEEEecCCCcEEEEEEcCCCcE
Confidence 000 001110000011234445689999887766643 446667776653 1211111223444444443444
Q ss_pred EEEEEcCceEEEEEEecCCCceeeeecCC-------------------ceEEEeecccccCcEEEEEecCCCCCcEEEEE
Q psy1288 311 ILSYIHHVKNVMHLHDLASGKHLYTFPLD-------------------VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 311 ~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-------------------~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
+....++ .+.+|++.+++....+... ...+..+.|+|||+.|+..... ..|.++
T Consensus 617 l~~~~~~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D----g~i~iW 689 (694)
T 3dm0_A 617 LCAATEH---GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD----GVIRVW 689 (694)
T ss_dssp EEEEETT---EEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT----SEEEEE
T ss_pred EEEEcCC---CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC----CeEEEE
Confidence 4444333 3889999776554433211 0114567889999877654332 356666
Q ss_pred eC
Q psy1288 372 NI 373 (1012)
Q Consensus 372 d~ 373 (1012)
|+
T Consensus 690 ~i 691 (694)
T 3dm0_A 690 GI 691 (694)
T ss_dssp EC
T ss_pred ec
Confidence 66
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.04 Score=60.19 Aligned_cols=201 Identities=4% Similarity=-0.080 Sum_probs=105.6
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee--cceeeeeeEEeeC---CCeEEEEecCCCCCcc-c
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL--HRLKFVSIAWTHD---HKGVFYSNQEPKSKSK-K 230 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~--~~~~~~~~~WSpD---G~~l~y~~~~~~~~g~-~ 230 (1012)
..+..++|||||++++.+.+... ....|+++|+++++...... .......++|+|| |+.|+....++...-. .
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFAR-GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--C-CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CceEEEEEcCCCceEEEecCccC-CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 35788999999988887765421 12489999999988654321 2234578999999 5777666544211000 0
Q ss_pred CCCCCceEEEEeeccccceeee------eeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC--Cceeeee
Q psy1288 231 HSKKNRSSAYHLTVNVAPITSQ------YITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK--DDVLDWA 302 (1012)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~i~~~------~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~--~~~~~~~ 302 (1012)
.........+. .....+... .|+++++.|+..+. +..+...|+..+.. ....+..... ...+...
T Consensus 98 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~----d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 98 EAPEMPVYSVK--GHKEIINAIDGIGGLGIGEGAPEIVTGSR----DGTVKVWDPRQKDD-PVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp TSCSSCSEEEC--CCSSCEEEEEEESGGGCC-CCCEEEEEET----TSCEEEECTTSCSS-CSEEECCCTTSCCCCEEEE
T ss_pred CCCCccEEEEE--ecccceEEEeeccccccCCCccEEEEEeC----CCeEEEEeCCCCCC-cceeccccCCCCCCceEEE
Confidence 00000000000 000112211 36788888877664 34577777765431 1223322221 1122222
Q ss_pred E-----EecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccc---cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 303 T-----CVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKK---KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 303 ~-----~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~sp---dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
. ..+++.++. ...+ ..+.+|++.+++...... ....+..+.++| +++.++..... ..+..+|+
T Consensus 171 ~~~~~~~~~~~~l~~-~~~d--~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~ 241 (357)
T 3i2n_A 171 AFGNAYNQEERVVCA-GYDN--GDIKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSLE----GKFHVFDM 241 (357)
T ss_dssp EEECCCC-CCCEEEE-EETT--SEEEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEEST----TEEEEEEE
T ss_pred EEEeccCCCCCEEEE-EccC--CeEEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEECCC----CeEEEEeC
Confidence 2 134344443 3333 368889997666433222 234566788898 78877665432 46777877
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.013 Score=66.89 Aligned_cols=195 Identities=11% Similarity=0.014 Sum_probs=101.1
Q ss_pred EeeeEEECCC-CcEEEEEEeCCCCceEEEEEEECCCCceece-ee--cceeeeeeEEee-CCCeEEEEecCCCCCcccCC
Q psy1288 158 SLGSYSFSED-GKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VL--HRLKFVSIAWTH-DHKGVFYSNQEPKSKSKKHS 232 (1012)
Q Consensus 158 ~i~~~~~SPD-Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~--~~~~~~~~~WSp-DG~~l~y~~~~~~~~g~~~~ 232 (1012)
.+..++|||+ ++.||-. +.+| .|.|+|+++++.... .. ....+..++|+| |++.|+-.+.+....-. +.
T Consensus 121 ~V~~l~~~P~~~~~lasG-s~dg----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw-d~ 194 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVG-SKGG----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ-DF 194 (435)
T ss_dssp CEEEEEECSSCTTCEEEE-ETTS----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE-ET
T ss_pred CEEEEEEeCCCCCEEEEE-eCCC----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe-ec
Confidence 4778999995 5566544 4444 689999988764322 11 233467899998 56655544433210000 00
Q ss_pred CCCc-eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEE
Q psy1288 233 KKNR-SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKL 310 (1012)
Q Consensus 233 ~~~~-~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l 310 (1012)
.... ..+.........+....++++++.|+..+. ...|...|+.+.. ...+..+. .. +..+.+. +++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~----dg~i~~wd~~~~~---~~~~~~h~-~~-v~~v~~~p~~~~~ 265 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN----VGNVILLNMDGKE---LWNLRMHK-KK-VTHVALNPCCDWF 265 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS----SSBEEEEESSSCB---CCCSBCCS-SC-EEEEEECTTCSSE
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC----CCcEeeeccCcce---eEEEeccc-ce-EEeeeecCCCceE
Confidence 0000 011100000011223347889987766543 3457777776433 12222222 22 3333332 33445
Q ss_pred EEEEEcCceEEEEEEecCCCceeeeec--CC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 311 ILSYIHHVKNVMHLHDLASGKHLYTFP--LD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 311 ~~~~~~~g~~~l~~~dl~~G~~~~~l~--~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++....++ .+.+||+.+++....+. .+ ...+..+.|+|+++.|+..... ..|.++|+
T Consensus 266 ~~s~s~d~--~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D----~~i~iwd~ 325 (435)
T 4e54_B 266 LATASVDQ--TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK----SEIRVYSA 325 (435)
T ss_dssp EEEEETTS--BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS----SCEEEEES
T ss_pred EEEecCcc--eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC----CEEEEEEC
Confidence 55555544 46678886554322221 11 3457788999999877654432 35788888
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.067 Score=69.99 Aligned_cols=198 Identities=8% Similarity=0.042 Sum_probs=109.3
Q ss_pred eEeeeEEECCCCcE-EEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCC
Q psy1288 157 VSLGSYSFSEDGKT-LAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSK 233 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~-iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~ 233 (1012)
..+....|||+++. ++.+.+.+| .|.++|+++++...... .......++|+|||+.|+..+.++...-. ....
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~----~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDF----FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTS----CEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred CcEEEEEEecCCCceEEEEEeCCC----eEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC
Confidence 45778999997654 333444433 68999999988654222 22345789999999988776654211000 0000
Q ss_pred CCceEEEEeec----------c-ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeee
Q psy1288 234 KNRSSAYHLTV----------N-VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWA 302 (1012)
Q Consensus 234 ~~~~l~~~~~~----------~-~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~ 302 (1012)
..... ..... . ...+....|+|+|+.+++.++ ..+..+++.++.. ...+.......+....
T Consensus 776 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 776 NERKS-INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-----NKVLLFDIHTSGL--LAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEE-EECCCCC--------CCCCCBCCCCBCTTSSEEEEEET-----TEEEEEETTTCCE--EEEEECSSSSCCCEEE
T ss_pred cccce-ecccccccccCCccccccceEEEEEECCCCCEEEEEcC-----CcEEEEEecCCCc--eeEEcCCCCCceEEEE
Confidence 00000 00000 0 012233458999999988763 4677888876541 1222222222222222
Q ss_pred EEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 303 TCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+++.+ +....+ ..+.+|++.++.....+......+..+.|+|+++.++..... ..+..+|+
T Consensus 848 ~sp~~~~l-~~~~~d--g~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d----g~v~vw~~ 911 (1249)
T 3sfz_A 848 FSPYDHLA-VIALSQ--YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD----QTIRVWET 911 (1249)
T ss_dssp ECSSTTEE-EEECSS--SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEEH
T ss_pred EcCCCCEE-EEEeCC--CeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC----CeEEEEEc
Confidence 22343444 443333 357888997776655555555667788999999877655432 34666765
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00047 Score=78.92 Aligned_cols=50 Identities=12% Similarity=-0.054 Sum_probs=46.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+.+.|+||+||.+|..||+.++.+++++|+++|+ +++|.+|++++|++..
T Consensus 342 ~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~-------~V~~~~y~~~~H~~~~ 391 (462)
T 3guu_A 342 VPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGA-------NINFSPYPIAEHLTAE 391 (462)
T ss_dssp CCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTC-------EEEEEEESSCCHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCC-------CeEEEEECcCCccCch
Confidence 6679999999999999999999999999999988 9999999999998753
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0014 Score=65.37 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=36.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|+++|++|..||+.++.++.+.+ +. +++++++.||.+.
T Consensus 126 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~---~~---------~~~~~~~~gH~~~ 169 (192)
T 1uxo_A 126 ESAKHRAVIASKDDQIVPFSFSKDLAQQI---DA---------ALYEVQHGGHFLE 169 (192)
T ss_dssp HHEEEEEEEEETTCSSSCHHHHHHHHHHT---TC---------EEEEETTCTTSCG
T ss_pred hhcCCEEEEecCCCCcCCHHHHHHHHHhc---Cc---------eEEEeCCCcCccc
Confidence 34489999999999999999998887766 33 6788999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.86 E-value=0.037 Score=63.07 Aligned_cols=201 Identities=13% Similarity=0.096 Sum_probs=102.4
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCcee--------ceeecceeeeeeEEeeCCCeEEEEec-CCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEY--------PEVLHRLKFVSIAWTHDHKGVFYSNQ-EPKSKS 228 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~--------~~t~~~~~~~~~~WSpDG~~l~y~~~-~~~~~g 228 (1012)
.+..+.|+|+|+.++++...+| .|.++|+.++... ...........++|+|++..++++.. ++...-
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i 258 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDH----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI 258 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTS----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred CeEEEEeCCCCCCeEEEEeCCC----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence 4678999999994444444444 6899999874321 11112233578999996665655543 211000
Q ss_pred c-cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ec
Q psy1288 229 K-KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VA 306 (1012)
Q Consensus 229 ~-~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 306 (1012)
. ...................+....|+|+++.+++.... ...|...|+..... ....+..+ ...+ ..+.+ .+
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~---dg~v~vwd~~~~~~-~~~~~~~h-~~~v-~~i~~sp~ 332 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWDLRNLKL-KLHSFESH-KDEI-FQVQWSPH 332 (430)
T ss_dssp EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCTTS-CSEEEECC-SSCE-EEEEECSS
T ss_pred EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC---CCeEEEEeCCCCCC-CeEEeecC-CCCE-EEEEECCC
Confidence 0 00000000000000011334455689999877666543 34677788766331 12233222 2233 33333 34
Q ss_pred CCEEEEEEEcCceEEEEEEecCCCc--------------eeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEe
Q psy1288 307 NDKLILSYIHHVKNVMHLHDLASGK--------------HLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372 (1012)
Q Consensus 307 ~~~l~~~~~~~g~~~l~~~dl~~G~--------------~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d 372 (1012)
++.++++...++ .|.+|++.... ....+......+..+.|+|++..++++.+.. ..|..++
T Consensus 333 ~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~ 407 (430)
T 2xyi_A 333 NETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED---NIMQVWQ 407 (430)
T ss_dssp CTTEEEEEETTS--CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT---SEEEEEE
T ss_pred CCCEEEEEeCCC--cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC---CCEEEeE
Confidence 345666655554 57778875411 1111112234577889999998555444322 3566666
Q ss_pred C
Q psy1288 373 I 373 (1012)
Q Consensus 373 ~ 373 (1012)
+
T Consensus 408 ~ 408 (430)
T 2xyi_A 408 M 408 (430)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.25 Score=53.81 Aligned_cols=63 Identities=24% Similarity=0.411 Sum_probs=43.6
Q ss_pred ceEeeeEEECCC---CcEEEEEEeCCCCceEEEEEEECCC-Cceec--eeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 156 TVSLGSYSFSED---GKTLAYCLSSSGSDWTSMHFKDVAT-GKEYP--EVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 156 ~~~i~~~~~SPD---Gk~iAy~~~~~G~~~~~L~v~dl~t-g~~~~--~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
...+..++|||| |++|+... .+| .|.++|+++ ++... ..........++|+|||+.|+....+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~-~dg----~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGS-WAN----DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEE-TTS----EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEEC-CCC----cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 346889999999 57776544 333 789999987 55432 22223346789999999988866644
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.041 Score=64.19 Aligned_cols=97 Identities=12% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
.++|||.+++=...++ .-.||- . .+ .-..++ ....- ....+.+++|||||++||-+... | +|.++|
T Consensus 92 awSPdG~~LAs~s~dg---~V~iwd--~-~~-~l~~l~-~~~~~-~~~sv~svafSPDG~~LAsgs~D-G----tVkIWd 157 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNG---NVSVFK--D-NK-MLTNLD-SKGNL-SSRTYHCFEWNPIESSIVVGNED-G----ELQFFS 157 (588)
T ss_dssp EECSSSSCEEEEETTS---CEEEEE--T-TE-EEEECC-CSSCS-TTTCEEEEEECSSSSCEEEEETT-S----EEEEEE
T ss_pred EECCCCCEEEEEeCCC---cEEEEe--C-Cc-eeeecc-CCCcc-ccccEEEEEEcCCCCEEEEEcCC-C----EEEEEE
Confidence 3569999988665443 356664 1 11 111122 11100 01246799999999999876542 2 799999
Q ss_pred CCCCce------eceee----c--ceeeeeeEEeeCCCeEEEEec
Q psy1288 190 VATGKE------YPEVL----H--RLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 190 l~tg~~------~~~t~----~--~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
+.++.. .-.++ . ......++||||| |+-.+.
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~ 200 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS 200 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC
Confidence 998853 11122 1 1235789999999 544443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.055 Score=68.17 Aligned_cols=196 Identities=10% Similarity=-0.006 Sum_probs=106.2
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCce
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRS 237 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~ 237 (1012)
.+..++|||||++||-.... | .|+++|..+++.............++|+| |+.|+-.+.+....-. +.....
T Consensus 19 ~V~~lafspdg~~lAsgs~D-g----~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lW-d~~~~~- 90 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVT-G----EVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVL-SLYSQK- 90 (902)
T ss_dssp CEEEEEEETTTTEEEEEETT-S----EEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEE-ETTTCS-
T ss_pred CcEEEEECCCCCEEEEEeCC-C----EEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEE-ECCCCc-
Confidence 47789999999999876543 2 79999988876543222233467899999 8756555443210000 000000
Q ss_pred EEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEE-------eeccCCCceeeeeEEec-CCE
Q psy1288 238 SAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKT-------LIEENKDDVLDWATCVA-NDK 309 (1012)
Q Consensus 238 l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~-------l~~~~~~~~~~~~~~~~-~~~ 309 (1012)
.+.... ....+....|+|+++.|+..+.. ..+...|+.+......+. .........+..+.+.. +..
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~d----g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQN----GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETT----SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEEcCC----CcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 110000 01234445689999998887643 456667776543100000 00011111222333332 123
Q ss_pred EEEEEEcCceEEEEEEecCCCceeeeecCC------------------ceEEEeecccccCcEEEEEecCCCCCcEEEEE
Q psy1288 310 LILSYIHHVKNVMHLHDLASGKHLYTFPLD------------------VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHC 371 (1012)
Q Consensus 310 l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~------------------~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~ 371 (1012)
+++....+ ..+ +||+.+++....+... ...+..+.|+|||+.|+-.... ..|..+
T Consensus 166 ~l~~g~~d--g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D----g~i~lW 238 (902)
T 2oaj_A 166 TVLISYEY--VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED----NSLVFW 238 (902)
T ss_dssp EEEEECSS--CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT----CCEEEE
T ss_pred EEEEEeCC--CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC----CeEEEE
Confidence 44443333 457 8999777654444321 1447788999999876654432 358888
Q ss_pred eC
Q psy1288 372 NI 373 (1012)
Q Consensus 372 d~ 373 (1012)
|+
T Consensus 239 d~ 240 (902)
T 2oaj_A 239 DA 240 (902)
T ss_dssp ET
T ss_pred EC
Confidence 98
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=96.80 E-value=0.032 Score=63.56 Aligned_cols=202 Identities=10% Similarity=0.032 Sum_probs=105.3
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC----------Ccee-ceeecceeeeeeEEeeCCCeEEEEe-cCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT----------GKEY-PEVLHRLKFVSIAWTHDHKGVFYSN-QEPK 225 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t----------g~~~-~~t~~~~~~~~~~WSpDG~~l~y~~-~~~~ 225 (1012)
.+..++|+|++..++++...+| .|+++|+.+ .+.. ...........++|+|+++.++++. .++.
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSS----DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSS----CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cEEEEEECCCCCcEEEEECCCC----cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 4668999999666666666555 588999875 2221 1222233357799999998444444 3221
Q ss_pred CCcc-cCCC-CCceEEE---EeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcc-cCcEEeeccCCCcee
Q psy1288 226 SKSK-KHSK-KNRSSAY---HLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE-SNWKTLIEENKDDVL 299 (1012)
Q Consensus 226 ~~g~-~~~~-~~~~l~~---~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~-~~~~~l~~~~~~~~~ 299 (1012)
..-. .... .....+- ........+....|+|+++.+++.... ...|...|+..... .....+..+. .. +
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~---dg~i~i~d~~~~~~~~~~~~~~~~~-~~-v 280 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD---DQKLMIWDTRNNNTSKPSHTVDAHT-AE-V 280 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET---TSEEEEEETTCSCSSSCSEEEECCS-SC-E
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC---CCeEEEEECCCCCCCcceeEeecCC-CC-e
Confidence 0000 0000 0000000 000000233444688865555554432 35688888876521 1122232222 22 3
Q ss_pred eeeEEe-cCCEEEEEEEcCceEEEEEEecCCC-ceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 300 DWATCV-ANDKLILSYIHHVKNVMHLHDLASG-KHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 300 ~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G-~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
..+.+. ++..+++....++ .|.+|++.+. .....+......+..+.|+|+++.++++.... ..|.++|+
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg--~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d---~~i~iwd~ 351 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADK--TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD---RRLHVWDL 351 (430)
T ss_dssp EEEEECSSCTTEEEEEETTS--EEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT---SCCEEEEG
T ss_pred EEEEeCCCCCCEEEEEeCCC--eEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC---CcEEEEeC
Confidence 333333 3344555555544 5888898653 33344444455677889999997766665432 35777777
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.35 Score=50.70 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=97.8
Q ss_pred CCEEEEEEEcCCCCeeEEEEEeCCCCceE-----EEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 115 GDHYFFFHNTGLQNHSVMYIQDSLDGEAR-----VFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 115 G~~~yy~~~~~~~~~~~l~~~~~~~g~~~-----~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
|.+++|..+ ..|++.+..+...+ .++.. .......+.|+|++++|.++-...+ .|++++
T Consensus 1 ~~~l~~~~~------~~I~~~~~~g~~~~~~~~~~~~~~------~~~~~~gi~~d~~~~~ly~~d~~~~----~I~~~~ 64 (267)
T 1npe_A 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHI------PAKVIIGLAFDCVDKVVYWTDISEP----SIGRAS 64 (267)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEE------EEEEEEEEEEETTTTEEEEEETTTT----EEEEEE
T ss_pred CcEEEEEcC------CeEEEEEecCcccccccceeeecC------CCCcEEEEEEecCCCEEEEEECCCC----EEEEEe
Confidence 456777642 36888776554321 12210 1124568899999988766543222 799999
Q ss_pred CCCCceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCC
Q psy1288 190 VATGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKD 268 (1012)
Q Consensus 190 l~tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~ 268 (1012)
++++......... .....++++|+++.||++...
T Consensus 65 ~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~--------------------------------------------- 99 (267)
T 1npe_A 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--------------------------------------------- 99 (267)
T ss_dssp SSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT---------------------------------------------
T ss_pred cCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC---------------------------------------------
Confidence 9876543211111 122445666665555544311
Q ss_pred CCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeeec-CCceEEEee
Q psy1288 269 APNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFP-LDVGTIVGF 346 (1012)
Q Consensus 269 ~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~-~~~~~v~~~ 346 (1012)
..+|.+++++... .+.++... ......+.+. +++.|++........+|+++++ +|+....+. .......++
T Consensus 100 --~~~I~~~~~~g~~---~~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~-dg~~~~~~~~~~~~~P~gi 172 (267)
T 1npe_A 100 --LDRIEVAKMDGTQ---RRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM-DGTNRRILAQDNLGLPNGL 172 (267)
T ss_dssp --TTEEEEEETTSCS---CEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEET-TSCCCEEEECTTCSCEEEE
T ss_pred --CCEEEEEEcCCCC---EEEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEec-CCCCcEEEEECCCCCCcEE
Confidence 1233344433211 12222211 0111223333 2467777654322457888888 454433332 222334567
Q ss_pred cccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 347 SGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 347 ~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++++++.|+++-.. ...|+++|+
T Consensus 173 a~d~~~~~lyv~d~~---~~~I~~~~~ 196 (267)
T 1npe_A 173 TFDAFSSQLCWVDAG---THRAECLNP 196 (267)
T ss_dssp EEETTTTEEEEEETT---TTEEEEEET
T ss_pred EEcCCCCEEEEEECC---CCEEEEEec
Confidence 788888888877544 247999998
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.77 Score=51.30 Aligned_cols=215 Identities=8% Similarity=0.023 Sum_probs=114.4
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecc-eeeeeeE
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHR-LKFVSIA 209 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~-~~~~~~~ 209 (1012)
.|++.+..+...+.++. +.....++.|++++++|.++ +..+. .|+.++++++......... ....+++
T Consensus 97 ~I~~i~~~~~~~~~~~~-------~~~~~~gl~~d~~~~~ly~~-D~~~~---~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLN-------NLENAIALDFHHRRELVFWS-DVTLD---RILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CEEEECTTSCCCEEEEC-------SCSCEEEEEEETTTTEEEEE-ETTTT---EEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred cceeeccCCCcEEEEec-------CCCccEEEEEecCCCeEEEE-eCCCC---cEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 57777776666666554 22245678999988888665 43322 7999999987654322211 1235677
Q ss_pred EeeCCCeEEEEecCCCCCcc--cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCc
Q psy1288 210 WTHDHKGVFYSNQEPKSKSK--KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNW 287 (1012)
Q Consensus 210 WSpDG~~l~y~~~~~~~~g~--~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~ 287 (1012)
..+++..||++......... .++. ....+.. .+........++|.++.||+.-... ..+|++++++... .
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~-~~~~l~~--~~l~~P~giavdp~~g~ly~td~~~--~~~I~r~~~dG~~---~ 237 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLW--QSLEKPRAIALHPMEGTIYWTDWGN--TPRIEASSMDGSG---R 237 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSC-SCEEEEC--SSCSCEEEEEEETTTTEEEEEECSS--SCEEEEEETTSCS---C
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCC-ceEEeec--CCCCCCcEEEEEcCCCeEEEeccCC--CCEEEEEeCCCCC---c
Confidence 87778888887532111000 1111 1111111 0111111224778889998875332 4789999987643 2
Q ss_pred EEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeee-ecCCceEEEeecccccCcEEEEEecCCCCC
Q psy1288 288 KTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYT-FPLDVGTIVGFSGKKKYSEIFYSFMSFLQP 365 (1012)
Q Consensus 288 ~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~-l~~~~~~v~~~~~spdg~~l~~~~ss~~~p 365 (1012)
+.++... -.....+.+. +++.||+.-.. ..+|++++++ |...+. +........+++. +++.|+++-. ..
T Consensus 238 ~~~~~~~-~~~PnGlavd~~~~~lY~aD~~--~~~I~~~d~d-G~~~~~~~~~~~~~P~giav--~~~~ly~td~---~~ 308 (386)
T 3v65_B 238 RIIADTH-LFWPNGLTIDYAGRRMYWVDAK--HHVIERANLD-GSHRKAVISQGLPHPFAITV--FEDSLYWTDW---HT 308 (386)
T ss_dssp EEEECSS-CSCEEEEEEEGGGTEEEEEETT--TTEEEEECTT-SCSCEEEECSSCSSEEEEEE--ETTEEEEEET---TT
T ss_pred EEEEECC-CCCeeeEEEeCCCCEEEEEECC--CCEEEEEeCC-CCeeEEEEECCCCCceEEEE--ECCEEEEeeC---CC
Confidence 3343322 2223344443 45788876433 4578999984 443332 2222222223333 3455665532 23
Q ss_pred cEEEEEeC
Q psy1288 366 TIIFHCNI 373 (1012)
Q Consensus 366 ~~l~~~d~ 373 (1012)
..|.++|.
T Consensus 309 ~~V~~~~~ 316 (386)
T 3v65_B 309 KSINSANK 316 (386)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEC
Confidence 46778874
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.056 Score=58.82 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=35.8
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHK 215 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~ 215 (1012)
....++|+|||+ |.++....+ .|+++|+++++...... .......++|+|||+
T Consensus 46 ~~~~~~~~~~g~-l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDVFEG----NIFKINPETKEIKRPFVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp CEEEEEECTTSC-EEEEETTTC----EEEEECTTTCCEEEEEECSSSSEEEEEECTTSC
T ss_pred cccCcEECCCCC-EEEEECCCC----EEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc
Confidence 356889999998 444333222 79999999988765432 223346788888886
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0007 Score=69.96 Aligned_cols=54 Identities=9% Similarity=-0.119 Sum_probs=42.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 797 GYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 797 ~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
...+..... +++.|+|+++|++|..||+.++.++++.+. .++++++++.||.+.
T Consensus 177 ~~~~~~~~~-------~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~~ 230 (245)
T 3e0x_A 177 LIDLVDNLK-------NIDIPVKAIVAKDELLTLVEYSEIIKKEVE-----------NSELKIFETGKHFLL 230 (245)
T ss_dssp HCBCGGGGG-------GCCSCEEEEEETTCSSSCHHHHHHHHHHSS-----------SEEEEEESSCGGGHH
T ss_pred cccHHHHHH-------hCCCCEEEEEeCCCCCCCHHHHHHHHHHcC-----------CceEEEeCCCCcceE
Confidence 444555556 778999999999999999988877766542 358889999999753
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0054 Score=65.78 Aligned_cols=104 Identities=13% Similarity=-0.002 Sum_probs=61.3
Q ss_pred EEEEEcCCCCCCCC-CCcChhHHHHHHhC--CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 434 CILYGYGGFAVSLQ-PGFSVTKIVFLRDF--NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 434 ~vv~~hGg~~~~~~-~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
.||++||-.+.... ..|.. ....|.+. |+.|+.+|+ |.|...... .+.. ....+++...++.+......
T Consensus 7 pvVllHG~~~~~~~~~~~~~-~~~~L~~~~~g~~v~~~d~-G~g~s~~~~--~~~~---~~~~~~~~~~~~~l~~~~~l- 78 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGA-IKKMVEKKIPGIHVLSLEI-GKTLREDVE--NSFF---LNVNSQVTTVCQILAKDPKL- 78 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHH-HHHHHHHHSTTCCEEECCC-SSSHHHHHH--HHHH---SCHHHHHHHHHHHHHSCGGG-
T ss_pred cEEEECCCCCCCCCcccHHH-HHHHHHHHCCCcEEEEEEe-CCCCccccc--cccc---cCHHHHHHHHHHHHHhhhhc-
Confidence 38889997554422 24544 34455543 789999997 765321110 0110 11122333333433322111
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCc-eeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDL-FGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~-f~a~v~~~~ 545 (1012)
.+++.++|||+||.++..++.++|+. +...|...+
T Consensus 79 ~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 26899999999999999999999984 888776654
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00085 Score=67.35 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=36.8
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+.+|+|+++|++|..||+.++.++++.+ +. +++++++.||.+.
T Consensus 126 ~~~p~lii~G~~D~~vp~~~~~~~~~~~---~~---------~~~~~~~~gH~~~ 168 (194)
T 2qs9_A 126 NCPYIVQFGSTDDPFLPWKEQQEVADRL---ET---------KLHKFTDCGHFQN 168 (194)
T ss_dssp HCSEEEEEEETTCSSSCHHHHHHHHHHH---TC---------EEEEESSCTTSCS
T ss_pred hCCCEEEEEeCCCCcCCHHHHHHHHHhc---CC---------eEEEeCCCCCccc
Confidence 4489999999999999999999988777 23 6778999999875
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.31 Score=51.07 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=107.7
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
++++++|+.-.. ...|++.+..+...+.+++. +......+.++|+++.|.++-.. . ..|+++++++
T Consensus 45 ~~~~~ly~~d~~----~~~I~~~~~~g~~~~~~~~~------~~~~p~~ia~d~~~~~lyv~d~~-~---~~I~~~~~~g 110 (267)
T 1npe_A 45 CVDKVVYWTDIS----EPSIGRASLHGGEPTTIIRQ------DLGSPEGIALDHLGRTIFWTDSQ-L---DRIEVAKMDG 110 (267)
T ss_dssp TTTTEEEEEETT----TTEEEEEESSSCCCEEEECT------TCCCEEEEEEETTTTEEEEEETT-T---TEEEEEETTS
T ss_pred cCCCEEEEEECC----CCEEEEEecCCCCcEEEEEC------CCCCccEEEEEecCCeEEEEECC-C---CEEEEEEcCC
Confidence 456778776432 24688888766555555431 11245678899998887655432 2 2789999987
Q ss_pred Cceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcc-----cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEEC
Q psy1288 193 GKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSK-----KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 193 g~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~-----~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn 266 (1012)
.......... .....++++|++..||++..... .+. .++. ..+.+.. .+........+++++++||+...
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~-~~~I~~~~~dg~-~~~~~~~--~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD-NPKIETSHMDGT-NRRILAQ--DNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS-SCEEEEEETTSC-CCEEEEC--TTCSCEEEEEEETTTTEEEEEET
T ss_pred CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC-CcEEEEEecCCC-CcEEEEE--CCCCCCcEEEEcCCCCEEEEEEC
Confidence 5433221111 22367889998888877753210 000 1111 1111110 00011112247889999998864
Q ss_pred CCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeec
Q psy1288 267 KDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFP 337 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~ 337 (1012)
. ...|+++++++.. .+.++... .. ...+.. +++.+++.... ..+|++++.++|+....+.
T Consensus 187 ~---~~~I~~~~~~g~~---~~~~~~~~-~~-P~gi~~-d~~~lyva~~~--~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 187 G---THRAECLNPAQPG---RRKVLEGL-QY-PFAVTS-YGKNLYYTDWK--TNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp T---TTEEEEEETTEEE---EEEEEECC-CS-EEEEEE-ETTEEEEEETT--TTEEEEEETTTTEEEEEEC
T ss_pred C---CCEEEEEecCCCc---eEEEecCC-CC-ceEEEE-eCCEEEEEECC--CCeEEEEeCCCCCceEEEc
Confidence 3 4579999986543 22333221 11 123333 34777775443 3468899987787655554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.021 Score=62.26 Aligned_cols=192 Identities=8% Similarity=-0.043 Sum_probs=103.7
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc----eeceeecceeeeeeEEeeCCC-eEEEEecCCCCCccc
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK----EYPEVLHRLKFVSIAWTHDHK-GVFYSNQEPKSKSKK 230 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~----~~~~t~~~~~~~~~~WSpDG~-~l~y~~~~~~~~g~~ 230 (1012)
...+..++|||||++|+.+.. +| .|+++|+.+++ .............++|+|||+ .|+....++...-.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~-d~----~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w- 84 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSW-DG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV- 84 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEET-TS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE-
T ss_pred CCcEEEEEEcCCCCEEEEEcC-CC----eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE-
Confidence 346888999999999987643 22 78888988877 333333333467899999999 77776644211000
Q ss_pred CC-CCCceEEEEeec--cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCC---------CcccCcEEeeccCCCce
Q psy1288 231 HS-KKNRSSAYHLTV--NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDN---------FAESNWKTLIEENKDDV 298 (1012)
Q Consensus 231 ~~-~~~~~l~~~~~~--~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~---------~~~~~~~~l~~~~~~~~ 298 (1012)
+. .......+ .. ....+....|++ ++.|+..+. +..|...|+.+ ... ...+. ... .
T Consensus 85 d~~~~~~~~~~--~~~~~~~~v~~l~~~~-~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~---~~~~~-~~~-~ 152 (342)
T 1yfq_A 85 DLIGSPSFQAL--TNNEANLGICRICKYG-DDKLIAASW----DGLIEVIDPRNYGDGVIAVKNLN---SNNTK-VKN-K 152 (342)
T ss_dssp CSSSSSSEEEC--BSCCCCSCEEEEEEET-TTEEEEEET----TSEEEEECHHHHTTBCEEEEESC---SSSSS-SCC-C
T ss_pred EeccCCceEec--cccCCCCceEEEEeCC-CCEEEEEcC----CCeEEEEcccccccccccccCCe---eeEEe-eCC-c
Confidence 10 00010000 00 112344445888 777776653 34566677654 220 01111 112 2
Q ss_pred eeeeEEecCCEEEEEEEcCceEEEEEEecCC-Cce-eeeecCC-ceEEEeecccc-cCcEEEEEecCCCCCcEEEEEeC
Q psy1288 299 LDWATCVANDKLILSYIHHVKNVMHLHDLAS-GKH-LYTFPLD-VGTIVGFSGKK-KYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~-G~~-~~~l~~~-~~~v~~~~~sp-dg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+..+.+.. +.++.. ..+ ..|.+|++.+ +.. ......+ ...+..+.++| +++.++..... ..+..+|+
T Consensus 153 v~~~~~~~-~~l~~~-~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----g~i~i~~~ 223 (342)
T 1yfq_A 153 IFTMDTNS-SRLIVG-MNN--SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----GRVAVEFF 223 (342)
T ss_dssp EEEEEECS-SEEEEE-EST--TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT----SEEEEEEC
T ss_pred eEEEEecC-CcEEEE-eCC--CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC----CcEEEEEE
Confidence 33334433 454443 333 4688899865 432 1222222 44566788999 88877665532 34666666
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.33 Score=54.85 Aligned_cols=186 Identities=9% Similarity=-0.017 Sum_probs=102.2
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCce
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRS 237 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~ 237 (1012)
....++|+|||+ +|.++..+ ..|+++|+++++............ ++|+|||+.|+....... ..
T Consensus 132 ~P~~la~d~~g~--lyv~d~~~---~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~----------~~ 195 (409)
T 3hrp_A 132 YMWGIAAVGNNT--VLAYQRDD---PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGT----------HT 195 (409)
T ss_dssp CEEEEEECSTTE--EEEEETTT---TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTT----------CE
T ss_pred CceEEEEeCCCC--EEEEecCC---CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCC----------ce
Confidence 456889999998 56666543 279999999988764333222223 899999997776654221 01
Q ss_pred EEEEeec--------------cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEee----ccCCCce-
Q psy1288 238 SAYHLTV--------------NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLI----EENKDDV- 298 (1012)
Q Consensus 238 l~~~~~~--------------~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~----~~~~~~~- 298 (1012)
++..... .........++|+++.||+ ++. +..|+++++++.. ..++ .......
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~---~~~I~~~d~~~~~----~~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDS---NKNFGRFNVKTQE----VTLIKQLELSGSLGTN 267 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECT---TCEEEEEETTTCC----EEEEEECCCCSCCCCS
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EEC---CCcEEEEECCCCC----EEEEecccccCCCCCC
Confidence 1111100 0011112347887888999 433 4589999987654 2232 1111111
Q ss_pred -eeeeEEec-CCEEEEEEEcCceEEEEEEecCCCceeeeecCC--------------ceEEEeecccccCcEEEEEecCC
Q psy1288 299 -LDWATCVA-NDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD--------------VGTIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 299 -~~~~~~~~-~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~--------------~~~v~~~~~spdg~~l~~~~ss~ 362 (1012)
...+.+.. ++.|++.... ..+|++++. +|+........ .....++.++++|+ |+++-..
T Consensus 268 P~~~ia~~p~~g~lyv~d~~--~~~I~~~~~-~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~- 342 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQN--LSSVYKITP-DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGF- 342 (409)
T ss_dssp SCCEEEEETTTTEEEEEETT--TTEEEEECT-TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETT-
T ss_pred ccccEEEeCCCCEEEEEeCC--CCEEEEEec-CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCC-
Confidence 11333333 4677776443 357888887 45422111110 01234567788887 6655320
Q ss_pred CCCcEEEEEeC
Q psy1288 363 LQPTIIFHCNI 373 (1012)
Q Consensus 363 ~~p~~l~~~d~ 373 (1012)
....|.++|+
T Consensus 343 -~~~~I~~~~~ 352 (409)
T 3hrp_A 343 -KGYCLRKLDI 352 (409)
T ss_dssp -TTCEEEEEET
T ss_pred -CCCEEEEEEC
Confidence 2347888886
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.84 Score=48.22 Aligned_cols=222 Identities=13% Similarity=0.107 Sum_probs=113.3
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
++|++++-...+ +.-.||-.. ++.....+.. +...+..+.|||||++|+..... | .|.++++..
T Consensus 27 ~~~~~l~s~~~d---g~v~vw~~~--~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d-g----~i~~~~~~~ 90 (313)
T 3odt_A 27 VDDSKVASVSRD---GTVRLWSKD--DQWLGTVVYT------GQGFLNSVCYDSEKELLLFGGKD-T----MINGVPLFA 90 (313)
T ss_dssp EETTEEEEEETT---SEEEEEEES--SSEEEEEEEE------CSSCEEEEEEETTTTEEEEEETT-S----CEEEEETTC
T ss_pred cCCCEEEEEEcC---CcEEEEECC--CCEEEEEeec------CCccEEEEEECCCCCEEEEecCC-C----eEEEEEeee
Confidence 778876644322 345566542 3332222221 23457889999999999876543 2 578888765
Q ss_pred Cc---eec-eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeec-CCCEEEEEECC
Q psy1288 193 GK---EYP-EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITN-EGPQFVFKTNK 267 (1012)
Q Consensus 193 g~---~~~-~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~-dg~~l~~~tn~ 267 (1012)
.. ... ..........+.| |++.|+....+....-. + ..............+....+.+ +++.|+..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~-d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVW-K---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE-E---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred cCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEE-c---CCcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 43 111 1122233466777 66666655543210000 0 0000000000112232333555 77777766643
Q ss_pred CCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeec
Q psy1288 268 DAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFS 347 (1012)
Q Consensus 268 ~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~ 347 (1012)
..+...|.... ...+.... ...+..+.+..++.+ +....+ ..+.+|++.+++....+......+..+.
T Consensus 165 ----~~i~i~d~~~~----~~~~~~~~-~~~i~~~~~~~~~~~-~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 165 ----KTIKLWQNDKV----IKTFSGIH-NDVVRHLAVVDDGHF-ISCSND--GLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp ----SCEEEEETTEE----EEEECSSC-SSCEEEEEEEETTEE-EEEETT--SEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ----CCEEEEecCce----EEEEeccC-cccEEEEEEcCCCeE-EEccCC--CeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 34555663221 12222212 223333444333553 344443 4688899977776666655556677888
Q ss_pred ccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 348 GKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 348 ~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++|++ .++... .-..+..+|+
T Consensus 233 ~~~~~-~l~~~~----~dg~v~iwd~ 253 (313)
T 3odt_A 233 LLPNG-DIVSCG----EDRTVRIWSK 253 (313)
T ss_dssp ECTTS-CEEEEE----TTSEEEEECT
T ss_pred EecCC-CEEEEe----cCCEEEEEEC
Confidence 99998 344332 2356899998
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0018 Score=74.07 Aligned_cols=110 Identities=11% Similarity=0.029 Sum_probs=70.3
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCe---EEEEEcCCCCCCC---------chhHHhhh--------------
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNG---IYAIPNIRGGGEY---------GERWHDGG-------------- 484 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~---~v~~~d~RG~g~~---------g~~~~~~~-------------- 484 (1012)
..|.||++||..+... .|.. ....|.++|| .|+.+|++|.|.. .......+
T Consensus 21 ~~ppVVLlHG~g~s~~--~w~~-la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~l~~ 97 (484)
T 2zyr_A 21 DFRPVVFVHGLAGSAG--QFES-QGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGLGSEFGLNISQIIDPETLDK 97 (484)
T ss_dssp CCCCEEEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHHHHH
T ss_pred CCCEEEEECCCCCCHH--HHHH-HHHHHHHcCCCcceEEEEECCCCCccccccccccccccccccccccccccccccccc
Confidence 4567899999765432 3443 3556676799 6999999986521 00000000
Q ss_pred -hc----CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC---CceeEEEEccC
Q psy1288 485 -RL----LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP---DLFGAAIVQVG 545 (1012)
Q Consensus 485 -~~----~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~ 545 (1012)
.. ......++++.+.++.+++.- ..+++.++|||+||.++..++.++| +.++++|...+
T Consensus 98 v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIap 164 (484)
T 2zyr_A 98 ILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDG 164 (484)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESC
T ss_pred cccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECC
Confidence 00 001123456666666666542 3368999999999999999998887 37888888877
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.61 Score=51.90 Aligned_cols=192 Identities=9% Similarity=-0.018 Sum_probs=95.9
Q ss_pred EECCCCcEEEEEEeCCCCceE-EEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCC--CCc----c---cCC
Q psy1288 163 SFSEDGKTLAYCLSSSGSDWT-SMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPK--SKS----K---KHS 232 (1012)
Q Consensus 163 ~~SPDGk~iAy~~~~~G~~~~-~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~--~~g----~---~~~ 232 (1012)
..+|||++ +|..+..+.... .|+++|+++++... ++.......+.+||||+.+|++..... .+| . .+.
T Consensus 27 ~~~~~~~~-~yv~~~~~~~~~~~v~v~D~~t~~~~~-~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRR-SYINLPAHHSAIIQQWVLDAGSGSILG-HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCE-EEEeCCcccCCccEEEEEECCCCeEEE-EecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 45688855 677775222212 89999999998754 333222238999999999888752110 000 0 000
Q ss_pred CCCceEEEEeecc--c-----cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe
Q psy1288 233 KKNRSSAYHLTVN--V-----APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV 305 (1012)
Q Consensus 233 ~~~~~l~~~~~~~--~-----~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (1012)
. ..++.-..... . .......++|||++||+..... ...|..+| ++.+. ..++++-. .. .....
T Consensus 105 ~-t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~--~~~v~viD-~t~~~--~~~~i~~~-~~---~~~~~ 174 (373)
T 2mad_H 105 V-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA--GPAVGLVV-QGGSS--DDQLLSSP-TC---YHIHP 174 (373)
T ss_pred C-CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC--CCeEEEEE-CCCCE--EeEEcCCC-ce---EEEEe
Confidence 0 00011100010 0 0011235999999999985432 34688888 76541 11212221 11 11122
Q ss_pred cCCEEEEEEEcCceEEEEEEecCCCceeeeec------CCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 306 ANDKLILSYIHHVKNVMHLHDLASGKHLYTFP------LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 306 ~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~------~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++..++....+ ..+.+++. +|+....+. .+.-......++++++.+++.... ..++.+|+
T Consensus 175 ~~~~~~~~~~~d--g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~v~vid~ 241 (373)
T 2mad_H 175 GAPSTFYLLCAQ--GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS----GKILQADI 241 (373)
T ss_pred CCCceEEEEcCC--CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC----ceEEEEec
Confidence 334444444443 34566777 665432221 011011123345666676665432 37999998
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.043 Score=59.98 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=38.8
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEE
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVF 218 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~ 218 (1012)
...+.|+||++.+.|+-...+ .|+++|.++++....... .....+.|+|||+.++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~-~~v~~i~~~~dg~l~v 105 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILER----ELHELHLASGRKTVHALP-FMGSALAKISDSKQLI 105 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGT----EEEEEETTTTEEEEEECS-SCEEEEEEEETTEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCC----EEEEEECCCCcEEEEECC-CcceEEEEeCCCeEEE
Confidence 357899999998888754433 799999999876543332 2346778888886443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.1 Score=59.05 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=98.7
Q ss_pred eEeeeEEECCCC--cEEEEEEeCCCCceEEEEEEECCCCceec-------------------------------------
Q psy1288 157 VSLGSYSFSEDG--KTLAYCLSSSGSDWTSMHFKDVATGKEYP------------------------------------- 197 (1012)
Q Consensus 157 ~~i~~~~~SPDG--k~iAy~~~~~G~~~~~L~v~dl~tg~~~~------------------------------------- 197 (1012)
..+..++|+|++ .+|+-+ ..+| .|+++|+.+++...
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~-s~d~----~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLS-TNDK----TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEE-ECSS----CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred CceEEEEEcCCCCcceEEEe-CCCC----eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 347789999999 666655 3333 57777776543210
Q ss_pred ----eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEe---ecc----ccceeeeeeecCC-CEEEEEE
Q psy1288 198 ----EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHL---TVN----VAPITSQYITNEG-PQFVFKT 265 (1012)
Q Consensus 198 ----~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~---~~~----~~~i~~~~~s~dg-~~l~~~t 265 (1012)
..........++|+|||+.|+.. .+....-. +.....+.+... ... ...+....|+|+| ..|+..+
T Consensus 169 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINSDYETYLSA-DDLRINLW-HLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp EEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEE-ETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred eEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEE-ECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence 00112234678999999977754 33110000 000000111000 000 0224455689998 6666655
Q ss_pred CCCCCCceEEEEeCCCCcc-cCcEEeeccCCC-----------ceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCC-Cc
Q psy1288 266 NKDAPNYRLITIDFDNFAE-SNWKTLIEENKD-----------DVLDWATCV-ANDKLILSYIHHVKNVMHLHDLAS-GK 331 (1012)
Q Consensus 266 n~~~~~~~L~~~dl~~~~~-~~~~~l~~~~~~-----------~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~-G~ 331 (1012)
. ...|...|+.++.. ......+..... ..+..+.+. +++.|+ .... ..+.+|++.. ++
T Consensus 247 ~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~---~~v~iwd~~~~~~ 318 (447)
T 3dw8_B 247 S----KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM-TRDY---LSVKVWDLNMENR 318 (447)
T ss_dssp T----TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE-EEES---SEEEEEETTCCSS
T ss_pred C----CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEE-EeeC---CeEEEEeCCCCcc
Confidence 3 24577777766541 000122222211 023334443 434444 3322 5788899865 55
Q ss_pred eeeeecCCce---------------EEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 332 HLYTFPLDVG---------------TIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 332 ~~~~l~~~~~---------------~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....+..... .+..+.|+|+++.|+... .-..|+.+|+
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s----~dg~v~iwd~ 371 (447)
T 3dw8_B 319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS----YNNFFRMFDR 371 (447)
T ss_dssp CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC----STTEEEEEET
T ss_pred ccceeeccccccccccccccccccccceEEEECCCCCEEEEec----cCCEEEEEEc
Confidence 4444432211 011267899998874332 2356889998
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.61 E-value=0.077 Score=56.99 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=36.9
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCC
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~ 215 (1012)
-..+.|+|+++.|.|+-...+ .|+.+|.++++....... .....++|+|||+
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~-~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAK----KVCRWDSFTKQVQRVTMD-APVSSVALRQSGG 66 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEEECS-SCEEEEEEBTTSS
T ss_pred ccCCeEECCCCEEEEEECCCC----EEEEEECCCCcEEEEeCC-CceEEEEECCCCC
Confidence 348999999988887654433 799999998876433222 2346678888887
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.08 Score=65.25 Aligned_cols=235 Identities=9% Similarity=0.027 Sum_probs=117.8
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCC--CcEEEEEEeCCCCceEEEEEEE
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSED--GKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPD--Gk~iAy~~~~~G~~~~~L~v~d 189 (1012)
+|+|++++-...+ +.-.||-.....+.....+. ++...+..+.|||+ |++|+.... +| .|+++|
T Consensus 18 s~dg~~latg~~d---g~I~vwd~~~~~~~~~~~l~------~h~~~V~~l~~s~~~~~~~l~s~s~-Dg----~I~vwd 83 (753)
T 3jro_A 18 DYYGKRLATCSSD---KTIKIFEVEGETHKLIDTLT------GHEGPVWRVDWAHPKFGTILASCSY-DG----KVLIWK 83 (753)
T ss_dssp CSSSCCEEEEETT---TEEEEEEEETTEEEEEEEEC------CCSSCEEEEEECCTTSCSEEEEEET-TS----CEEEEE
T ss_pred CCCCCeEEEEECC---CcEEEEecCCCCCccceecc------CCcCceEEEEecCCCCCCEEEEEeC-CC----eEEEEE
Confidence 4788876655332 35667765432222222222 12346788999998 888876543 33 688999
Q ss_pred CCCCceec---eeecceeeeeeEEeeC--CCeEEEEecCCCCCcc-cCCC-CCceEEEEeeccccceeeeeeec------
Q psy1288 190 VATGKEYP---EVLHRLKFVSIAWTHD--HKGVFYSNQEPKSKSK-KHSK-KNRSSAYHLTVNVAPITSQYITN------ 256 (1012)
Q Consensus 190 l~tg~~~~---~t~~~~~~~~~~WSpD--G~~l~y~~~~~~~~g~-~~~~-~~~~l~~~~~~~~~~i~~~~~s~------ 256 (1012)
+.+++... ..........++|+|| |+.|+....++...-. .... ........ .....+....|+|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~--~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID--AHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE--CCSSCEEEEEECCCC----
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee--cCCCceEEEEecCcccccc
Confidence 98886322 2222334678999999 8877776654211000 0000 00001100 0012233334666
Q ss_pred -------CCCEEEEEECCCCCCceEEEEeCCCCccc-CcEEeeccCCCceeeeeEEecC---CEEEEEEEcCceEEEEEE
Q psy1288 257 -------EGPQFVFKTNKDAPNYRLITIDFDNFAES-NWKTLIEENKDDVLDWATCVAN---DKLILSYIHHVKNVMHLH 325 (1012)
Q Consensus 257 -------dg~~l~~~tn~~~~~~~L~~~dl~~~~~~-~~~~l~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~l~~~ 325 (1012)
+++.|+..+.. ..|...|+.++... .....+..... .+..+.+... +.++++...++ .+.+|
T Consensus 162 ~~~~~~~d~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg--~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGAD----NLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDR--TCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEETT----SCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSS--CEEEE
T ss_pred cccccCCCCCEEEEEECC----CeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCC--EEEEe
Confidence 56766666643 33555555443210 01111122222 2333444333 45555555554 46777
Q ss_pred ecCCCcee---eeecC--CceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 326 DLASGKHL---YTFPL--DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 326 dl~~G~~~---~~l~~--~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
++.+++.. ..... ..+.+..+.|+|+++.++..... ..|..+|+
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D----g~I~vwd~ 283 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD----NKVTLWKE 283 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS----SCEECCBC
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC----CEEEEEec
Confidence 87655311 11111 13445567889998876654332 34777776
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0048 Score=71.31 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=36.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||++|++|..||+.+..+.++++- - .++++++++.||.+.
T Consensus 216 ~i~~PvLiI~G~~D~~vp~~~~~~~l~~~~---~-------~~~~~~i~gagH~~~ 261 (456)
T 3vdx_A 216 RIDVPALILHGTGDRTLPIENTARVFHKAL---P-------SAEYVEVEGAPHGLL 261 (456)
T ss_dssp TCCSCCEEEEETTCSSSCGGGTHHHHHHHC---T-------TSEEEEETTCCSCTT
T ss_pred hCCCCEEEEEeCCCCCcCHHHHHHHHHHHC---C-------CceEEEeCCCCCcch
Confidence 778999999999999999985555544432 2 568999999999865
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.22 Score=51.97 Aligned_cols=194 Identities=11% Similarity=0.123 Sum_probs=105.0
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCce
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRS 237 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~ 237 (1012)
...+.++ || +|..+....| .+.|.++|+++|+.++...-........-+++|+.||.+...... .. .+.. ..+
T Consensus 45 tqGL~~~-~~-~LyestG~~g--~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~-v~v~D~~-t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNG--RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGL-GFVWNIR-NLR 118 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETT--EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE-EEEEETT-TCC
T ss_pred cceEEEE-CC-EEEEECCCCC--CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCE-EEEEECc-cCc
Confidence 3456777 65 4444443333 468999999999986532212111222345578888777543110 00 0000 001
Q ss_pred EEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeec-cC--CCceeeeeEEecCCEEEEEE
Q psy1288 238 SAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIE-EN--KDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 238 l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~l~~~~ 314 (1012)
++-..+....+ ...++||++||+. +. ..+|..+|.++.+. ...+.. .+ +-..+..+.+.+ +.|++..
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~L~~S-dG---s~~i~~iDp~T~~v--~~~I~V~~~g~~~~~lNELe~~~-G~lyan~ 188 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQYLIMS-DG---TPVLRFLDPESLTP--VRTITVTAHGEELPELNELEWVD-GEIFANV 188 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSCEEEC-CS---SSEEEEECTTTCSE--EEEEECEETTEECCCEEEEEEET-TEEEEEE
T ss_pred EEEEEECCCCc---eEEecCCCEEEEE-CC---CCeEEEEcCCCCeE--EEEEEeccCCccccccceeEEEC-CEEEEEE
Confidence 11100000011 1256788877765 32 35799999877652 122211 11 111222344455 6777544
Q ss_pred EcCceEEEEEEecCCCceeeeecCC------------ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 315 IHHVKNVMHLHDLASGKHLYTFPLD------------VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G~~~~~l~~~------------~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
-. ...|.++|.++|+....+.++ .....+++++|++++++++.-.+ +.+|.+.+
T Consensus 189 w~--~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W---p~~~ev~~ 254 (262)
T 3nol_A 189 WQ--TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW---PKVFEITL 254 (262)
T ss_dssp TT--SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC---SEEEEEEE
T ss_pred cc--CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC---CceEEEEE
Confidence 32 347999999999877666542 12456788999999988887554 46777765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.099 Score=55.92 Aligned_cols=209 Identities=13% Similarity=0.088 Sum_probs=99.5
Q ss_pred eEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eec--ceeeeeeEEeeCCCeEE
Q psy1288 142 ARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLH--RLKFVSIAWTHDHKGVF 218 (1012)
Q Consensus 142 ~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~--~~~~~~~~WSpDG~~l~ 218 (1012)
++.+||...+..+ +....+.|||++ .||.+.+ + .|+++|+++|+..+. ... ......++|+|||+.|+
T Consensus 13 p~rvldap~~~~d--~y~~~l~WS~~~-~lAvg~D--~----tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 13 PDRILDAPEIRND--YYLNLVDWSSGN-VLAVALD--N----SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CSEEEECTTCCCC--TTCBCEEECTTS-EEEEEET--T----EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred CCEEeeCCCCccc--ccceEEEECCCC-EEEEEeC--C----EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence 3445564433322 335668999997 7776542 2 799999999987653 222 22357899999999887
Q ss_pred EEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCce
Q psy1288 219 YSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDV 298 (1012)
Q Consensus 219 y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~ 298 (1012)
-.+.+....-. +.. ..+.+..... .......+++++..++..+.. ..+...+...... ....+..+ ...+
T Consensus 84 sgs~Dg~v~iw-~~~-~~~~~~~~~~--h~~~~~~~~~~~~~l~s~~~~----~~~~~~~~~~~~~-~~~~~~~~-~~~~ 153 (318)
T 4ggc_A 84 VGTSSAEVQLW-DVQ-QQKRLRNMTS--HSARVGSLSWNSYILSSGSRS----GHIHHHDVRVAEH-HVATLSGH-SQEV 153 (318)
T ss_dssp EEETTSEEEEE-ETT-TTEEEEEEEC--CSSCEEEEEEETTEEEEEETT----SEEEEEETTSSSC-EEEEEECC-SSCE
T ss_pred EEECCCcEEEe-ecC-CceeEEEecC--ccceEEEeecCCCEEEEEecC----CceEeeecCCCce-eEEEEcCc-cCce
Confidence 66544210000 000 0011111000 000111245556655544432 2333344333220 11122222 2222
Q ss_pred eeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee----eecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 299 LDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY----TFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~----~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.......+ +..++....++ .+.+|++.+++... ......+.+....+++++..++...+.. ....+..+|.
T Consensus 154 ~~~~~~~~-~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~i~lwd~ 228 (318)
T 4ggc_A 154 CGLRWAPD-GRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-SDRHIRIWNV 228 (318)
T ss_dssp EEEEECTT-SSEEEEEETTS--CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT-TTCEEEEEET
T ss_pred EEEEEcCC-CCEEEEEecCc--ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC-CCCEEEEEec
Confidence 22222233 33344444443 46778887664321 1112234455667777776665544332 3345666776
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.12 Score=58.09 Aligned_cols=98 Identities=5% Similarity=-0.046 Sum_probs=56.1
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECC--------CCcEEEEEEeCCCCceEE
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSE--------DGKTLAYCLSSSGSDWTS 184 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SP--------DGk~iAy~~~~~G~~~~~ 184 (1012)
+++..++-... ++.-.||-..........++. .+ .++...+..++||| ||+.||=... + .+
T Consensus 99 ~~~~~las~~~---d~~v~lw~~~~~~~~~~~~~~--~~-~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~-D----~t 167 (393)
T 4gq1_A 99 VYSLFLACVCQ---DNTVRLIITKNETIITQHVLG--GK-SGHHNFVNDIDIADVYSADNRLAEQVIASVGD-D----CT 167 (393)
T ss_dssp EEEEEEEEEET---TSCEEEEEEETTEEEEEEEEC--TT-TSCSSCEEEEEEEEEECTTCSEEEEEEEEEET-T----SE
T ss_pred CCCCEEEEEeC---CCcEEEEECCCCccceeeeec--cc-CCCCCceEEEEEccccccccCCCCCEEEEEEC-C----Ce
Confidence 45544443322 245677866543222222221 11 12345688899998 8988875443 2 38
Q ss_pred EEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEe
Q psy1288 185 MHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 185 L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
|+++|+.++....... ......+++|+|++..++.+.
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG 205 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec
Confidence 9999998776543222 233356799999987655554
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=68.92 Aligned_cols=44 Identities=16% Similarity=0.038 Sum_probs=34.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||++|++|..||+.++.++.+.+. .+.++++++ ||.+.
T Consensus 229 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~g-gH~~~ 272 (286)
T 3qit_A 229 SIQVPTTLVYGDSSKLNRPEDLQQQKMTMT-----------QAKRVFLSG-GHNLH 272 (286)
T ss_dssp HCCSCEEEEEETTCCSSCHHHHHHHHHHST-----------TSEEEEESS-SSCHH
T ss_pred ccCCCeEEEEeCCCcccCHHHHHHHHHHCC-----------CCeEEEeeC-CchHh
Confidence 566999999999999999887777655442 347888999 99753
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0097 Score=67.56 Aligned_cols=111 Identities=12% Similarity=0.049 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCCCCCC------CCCCcCh---hHHHHHHhCCeEEEEEcCCCCCCCchhHHh------hhhcCCCc----
Q psy1288 430 GNNPCILYGYGGFAVS------LQPGFSV---TKIVFLRDFNGIYAIPNIRGGGEYGERWHD------GGRLLNKQ---- 490 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~------~~~~~~~---~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~------~~~~~~~~---- 490 (1012)
+..|.||++||..+.. ....|.. .....|.++||.|+.+|++|.|.....-.+ .+....+.
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~ 129 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSE 129 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhccccccccccc
Confidence 4456788999975531 1233431 345667667999999999997643211000 00000000
Q ss_pred -----chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhh--------------------------CCCceeE
Q psy1288 491 -----NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQ--------------------------RPDLFGA 539 (1012)
Q Consensus 491 -----~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~--------------------------~p~~f~a 539 (1012)
...+|+.+ +++. .....++.++|||+||.++..++.. +|+++..
T Consensus 130 ~~~~~~~a~dl~~----ll~~-l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~s 204 (431)
T 2hih_A 130 KYGHERYGKTYEG----VLKD-WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTS 204 (431)
T ss_dssp HHTCCSEEEEECC----SCTT-CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEE
T ss_pred cCCHHHHHHHHHH----HHHH-hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeE
Confidence 00001100 0111 1113689999999999999887655 5788888
Q ss_pred EEEccC
Q psy1288 540 AIVQVG 545 (1012)
Q Consensus 540 ~v~~~~ 545 (1012)
++...+
T Consensus 205 lv~i~t 210 (431)
T 2hih_A 205 ITTIAT 210 (431)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 887766
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0017 Score=67.97 Aligned_cols=42 Identities=14% Similarity=0.026 Sum_probs=35.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 865 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH 865 (1012)
++..|+||++|++|..||+.++.++.+.+. .++++++++.||
T Consensus 204 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH 245 (262)
T 3r0v_A 204 SISIPTLVMDGGASPAWIRHTAQELADTIP-----------NARYVTLENQTH 245 (262)
T ss_dssp TCCSCEEEEECTTCCHHHHHHHHHHHHHST-----------TEEEEECCCSSS
T ss_pred cCCCCEEEEeecCCCCCCHHHHHHHHHhCC-----------CCeEEEecCCCc
Confidence 677999999999999999888777765542 458899999999
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1012 | ||||
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 6e-56 | |
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 2e-04 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 3e-32 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 2e-14 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 6e-12 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 1e-10 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 5e-10 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 1e-07 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 1e-07 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 1e-07 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 2e-07 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 3e-06 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 4e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 5e-05 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 0.003 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 0.004 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 198 bits (503), Expect = 6e-56
Identities = 133/435 (30%), Positives = 193/435 (44%), Gaps = 80/435 (18%)
Query: 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDR 92
M F+YP ++E+ + +YHG K+ DPY W+EDPDSE+TK FV+ +N I+ P+LE P R
Sbjct: 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIR 60
Query: 93 DKVKAELTKMWDYPKYSSPQRQGDHYFFFHNTGLQ------------------------- 127
K +T+++DYPKYS ++G YF+F+NTGLQ
Sbjct: 61 GLYKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILS 120
Query: 128 ---------------NHSVMYIQDSLDGEARVFLDPNNLSD------DGTVSLGSYSFSE 166
Y + + V +++
Sbjct: 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH 180
Query: 167 DGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRL----KFVSIAWTHDHKGVFY--- 219
DGK + Y + T H L + + +
Sbjct: 181 DGKGMFYNAYPQQDGKSDGTETS--TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA 238
Query: 220 SNQEPKSKSKKHSKKNRSSAYHLTVNVAPITS--------------------QYITNEGP 259
+ ++ L S Y+TNEG
Sbjct: 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGT 298
Query: 260 QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVK 319
F FKTN+ +PNYRLI IDF + ES WK L+ E++ DVL+W CV ++ L+L Y+H VK
Sbjct: 299 VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358
Query: 320 NVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDP 379
N + LHDLA+G L FPL+VG++VG+SG+KK +EIFY F SFL P II+HC++
Sbjct: 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE--- 415
Query: 380 NSKLETSIFREIKVP 394
+LE +FRE+ V
Sbjct: 416 --ELEPRVFREVTVK 428
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 42.6 bits (99), Expect = 2e-04
Identities = 52/246 (21%), Positives = 83/246 (33%), Gaps = 42/246 (17%)
Query: 725 RYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDYG 784
YP+ K+DG+E N QKLYYH LGTDQ +DIL AE + Y
Sbjct: 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYV 247
Query: 785 SPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLM-------TADHDDRVSPVHSLKF 837
+ + + Q N + G L+ ++ V + +
Sbjct: 248 LLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRH 307
Query: 838 AATLQEKLRDYP----HQTNPLLIRIETKAGHGGGKPTTKQLCVRYMMGGHFTVEFI--- 890
+ + D+ + L+ E + L + Y+ T++
Sbjct: 308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA 367
Query: 891 ---------------------RSVTTIR-TFMSFLQPTIIFHCNIPARVDPNSKLETSIF 928
+ T I F SFL P II+HC++ +LE +F
Sbjct: 368 TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE-----ELEPRVF 422
Query: 929 REIKVP 934
RE+ V
Sbjct: 423 REVTVK 428
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 124 bits (312), Expect = 3e-32
Identities = 162/321 (50%), Positives = 197/321 (61%), Gaps = 50/321 (15%)
Query: 397 DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIV 456
D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++P LYGYGGF +S+ P +SV++++
Sbjct: 1 DASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLI 60
Query: 457 FLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAI 516
F+R G+ A+ NIRGGGEYGE WH GG L NKQN FDDFQCAAEYLI GYT RL I
Sbjct: 61 FVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTI 120
Query: 517 QGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDT 576
GGSNGGLL A C NQRPDLFG I QVG
Sbjct: 121 NGGSNGGLLVATCANQRPDLFGCVIAQVGV------------------------------ 150
Query: 577 IPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQ 636
+DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++
Sbjct: 151 -------------------MDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVK 191
Query: 637 GPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 696
E QYP+ LL+TADHDDRV P+HSLKF ATLQ + Q NPLLI ++TKAGH
Sbjct: 192 -LPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGH 250
Query: 697 GGGKPTTKQFPLTIPVIYFYL 717
G GKPT K + F
Sbjct: 251 GAGKPTAKVIEEVSDMFAFIA 271
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 937 DPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS 991
D S ++T Q+FYPSKDGTKIPMFI+ +KG +LDG++P LYGYGGF +S+ P +S
Sbjct: 1 DASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYS 55
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 65.2 bits (157), Expect = 6e-12
Identities = 63/110 (57%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Query: 766 DMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADH 825
DMLKF+K+TIG+ W +DYG + FE+L+ YSPLHN++ P QYP+ LL+TADH
Sbjct: 152 DMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEA-DDIQYPSMLLLTADH 210
Query: 826 DDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875
DDRV P+HSLKF ATLQ + Q NPLLI ++TKAGHG GKPT K +
Sbjct: 211 DDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 260
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 60.7 bits (145), Expect = 1e-10
Identities = 24/207 (11%), Positives = 52/207 (25%), Gaps = 2/207 (0%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTK 454
D S+ ++ V+ S DG+++P ++L A P ++ +GG +
Sbjct: 4 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTFA 61
Query: 455 IVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRL 514
+ G E + D A + ++ +
Sbjct: 62 ASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASELYIM 121
Query: 515 AIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDL 574
G L A V E+ + + ++
Sbjct: 122 GYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRS 181
Query: 575 DTIPDRKIEGKLPLTQVVHKVLDMLKF 601
+ + K PL + +
Sbjct: 182 RSPINHVDRIKEPLALIHPQNDSRTPL 208
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 59.1 bits (141), Expect = 5e-10
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 935 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS 991
D S+ ++ V+ S DG+++P ++L A P ++ +GG +
Sbjct: 4 DLRRSIAGSRLVWVESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWD 58
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 36/326 (11%), Positives = 71/326 (21%), Gaps = 79/326 (24%)
Query: 390 EIKVPDFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG 449
+++ D+ + ++ Y S +I + G +P I+ +G A
Sbjct: 43 DLQPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKE---GPHPAIVKYHGYNASY---D 96
Query: 450 FSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL--------------LNKQNVFDD 495
+ ++V +RG + + V+ D
Sbjct: 97 GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLD 156
Query: 496 FQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRW 555
A E + + +R+ + GGS GG LT A A
Sbjct: 157 AVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDV 216
Query: 556 LIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYG 615
+ + + S
Sbjct: 217 ALEQPYLEINSFFRR---------------------------------------NGSPET 237
Query: 616 SPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEK 675
Y + ++ P L+ D P L+ K
Sbjct: 238 EVQAMKTLSYFDIMNLADRVKVP----------VLMSIGLIDKVTPPSTVFAAYNHLETK 287
Query: 676 LRDYPHQTNPLLIRIETKAGHGGGKP 701
+++ GH
Sbjct: 288 KE----------LKVYRYFGHEYIPA 303
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 52.3 bits (124), Expect = 1e-07
Identities = 26/159 (16%), Positives = 43/159 (27%), Gaps = 11/159 (6%)
Query: 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCI--LYGYGGFAVSLQPGFSVTKIVFLR 459
E QV PS G I + S N+P + L G + +
Sbjct: 10 EYLQVPSPS-MGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYD 63
Query: 460 DFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAE---YLIASGYTQSSRLAI 516
+P Y + + Q + +E +L A+ + + + A+
Sbjct: 64 QSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAV 123
Query: 517 QGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRW 555
G S P F A G + S
Sbjct: 124 VGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGP 162
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 52.4 bits (124), Expect = 1e-07
Identities = 41/324 (12%), Positives = 63/324 (19%), Gaps = 80/324 (24%)
Query: 395 DFDPSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYG-------------- 440
+ E V + G +I ++L K + PC++ G
Sbjct: 47 ESHLKTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFPHDWLFW 104
Query: 441 ---GFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQ 497
G+ + D P + R R + VF D
Sbjct: 105 PSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAV 164
Query: 498 CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLI 557
A E + R+ I GGS GG + A + D
Sbjct: 165 RAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKAL---------LCDVPFLCH 215
Query: 558 VHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSP 617
+ + +
Sbjct: 216 FRRAVQLVDTHPYA--------------------------------EITNFLKTHRDKEE 243
Query: 618 ANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLR 677
Y G + + P L D+ P
Sbjct: 244 IVFRTLSYFDGVNFAARAKIP----------ALFSVGLMDNICPPSTVFAAYNYYAG--- 290
Query: 678 DYPHQTNPLLIRIETKAGHGGGKP 701
P IRI H GG
Sbjct: 291 -------PKEIRIYPYNNHEGGGS 307
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 2e-07
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 8/179 (4%)
Query: 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-FAVSLQPGFSVT-KIVFLRD 460
+ D +PM IL + P +L G + S+ F V+ + V +
Sbjct: 2 KVEYRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSS 61
Query: 461 FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGS 520
+ + RG G G + R D A ++ Y +R+A+ G
Sbjct: 62 HGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKD 121
Query: 521 NGGLLTAACINQRPDL------FGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCD 573
GG L+ + + + G+A+ + + ++ + N +
Sbjct: 122 YGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEMTK 180
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 47.6 bits (112), Expect = 3e-06
Identities = 22/160 (13%), Positives = 34/160 (21%), Gaps = 15/160 (9%)
Query: 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCI--LYGYGGFAVSLQPGFSVTKIVFLR 459
E QV S G I + G + L G +
Sbjct: 7 EYLQVPSAS-MGRDIKVQFQG-------GGPHAVYLLDGLRAQDDYNGWDINTPAFEEYY 58
Query: 460 DFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLI----ASGYTQSSRLA 515
+P Y W+ + + + + A+ + A
Sbjct: 59 QSGLSVIMPVGGQSSFYT-DWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNA 117
Query: 516 IQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRW 555
G S G P F A G S+
Sbjct: 118 AVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWP 157
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 5/172 (2%)
Query: 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGG-FAVSLQPGFSVTKIVFL-RD 460
+K++ + + TK ++ P +L Y G + F + +L
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLAST 62
Query: 461 FNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGS 520
N I A + RG G G++ +D AA G+ + R+AI G S
Sbjct: 63 ENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWS 122
Query: 521 NGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFC 572
GG +T+ + +F I +S + V+T +
Sbjct: 123 YGGYVTSMVLGSGSGVFKCGIAVAP---VSRWEYYDSVYTERYMGLPTPEDN 171
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.1 bits (103), Expect = 5e-05
Identities = 33/168 (19%), Positives = 47/168 (27%), Gaps = 19/168 (11%)
Query: 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCI--LYGYGGFAVSLQPGFSVTKIVFL 458
+E V PS G IP+ L+ G + L + + + L
Sbjct: 4 YENLMVPSPS-MGRDIPVAFLA-------GGPHAVYLLDAFNAGPDVSNWVTAGNAMNTL 55
Query: 459 RDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDF--QCAAEYLIASGYTQSSRLAI 516
P G W G +D F ++L A+ A
Sbjct: 56 AGKGISVVAPA-GGAYSMYTNWEQDGS-----KQWDTFLSAELPDWLAANRGLAPGGHAA 109
Query: 517 QGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISD-CGRWLIVHTMKD 563
G + GG A PD FG A G S+ I M+
Sbjct: 110 VGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQ 157
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 38.6 bits (88), Expect = 0.003
Identities = 22/231 (9%), Positives = 55/231 (23%), Gaps = 18/231 (7%)
Query: 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCI--LYGYGGFAVSLQPGFSVTKIVFLR 459
+ Y +GTK + + G + ++G G ++ + +
Sbjct: 26 RIVKETYTGINGTK-SLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDH 84
Query: 460 DFNGIYAIPNIR-------GGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512
P I G + + + + A
Sbjct: 85 AIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRM 144
Query: 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGR--------WLIVHTMKDC 564
G + GGL T + D + G+ + + + +
Sbjct: 145 HRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANSIAEAINRSGLSKR 204
Query: 565 KNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYG 615
+ +F + I + ++ + + F+K +
Sbjct: 205 EYFVFAATGSEDIAYANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGAT 255
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 38.4 bits (88), Expect = 0.004
Identities = 25/226 (11%), Positives = 45/226 (19%), Gaps = 36/226 (15%)
Query: 464 IYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ------------- 510
G G ++L
Sbjct: 138 ASIYVAGVGTRSSDGFQTSGDY-----QQIYSMTAVIDWLNGRARAYTSRKKTHEIKASW 192
Query: 511 -SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMF 569
+ ++A+ G S G + + + + G IS + F
Sbjct: 193 ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAG---ISSWYNYYR-ENGLVRSPGGF 248
Query: 570 HFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGY 629
DLD + L + + K YL
Sbjct: 249 PGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYL--- 305
Query: 630 SPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEK 675
++ L++ D V+P + F L E
Sbjct: 306 INTDKVKAD----------VLIVHGLQDWNVTPEQAYNFWKALPEG 341
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1012 | |||
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 100.0 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.94 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.93 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.92 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.9 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.76 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.74 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.69 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.66 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.65 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.64 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.62 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.61 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.61 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.59 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.56 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.56 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.56 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.56 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.56 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.55 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.55 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.53 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.51 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.51 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.51 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.49 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.49 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.48 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.43 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.41 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.38 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.38 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.36 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.35 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.35 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.33 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.3 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.28 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.28 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.23 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.22 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.21 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.21 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.18 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.18 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.16 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.15 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.15 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.14 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.13 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.07 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.03 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 98.99 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 98.97 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 98.96 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 98.96 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 98.95 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.94 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 98.92 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 98.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.92 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 98.91 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 98.91 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 98.88 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 98.81 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 98.81 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 98.81 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 98.8 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 98.8 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 98.77 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 98.75 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 98.74 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 98.69 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 98.69 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 98.67 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 98.66 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.65 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 98.65 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 98.62 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 98.57 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 98.56 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 98.55 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.55 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.54 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 98.54 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 98.49 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.46 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 98.46 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 98.42 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 98.42 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 98.38 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.36 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 98.33 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.28 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.27 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 98.26 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.25 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 98.24 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 98.16 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.16 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.14 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 98.12 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.11 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.1 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.09 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 98.08 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.07 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 98.05 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.05 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.04 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 98.03 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 98.02 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.0 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.95 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.91 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 97.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.88 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 97.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.86 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 97.8 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 97.78 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 97.77 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.77 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 97.75 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.74 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 97.71 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 97.7 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 97.69 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.68 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 97.66 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 97.65 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 97.65 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.64 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 97.63 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 97.62 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 97.57 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 97.57 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 97.54 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.54 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.52 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.51 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.51 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 97.51 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 97.48 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.39 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.36 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 97.28 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.27 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 97.18 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 97.12 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 97.12 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.09 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 97.07 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.03 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.03 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.02 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 97.02 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 96.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.88 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 96.86 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 96.76 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.7 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 96.69 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.65 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 96.19 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 96.15 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.13 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 96.09 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 96.08 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 95.99 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 95.99 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 95.98 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 95.94 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 95.94 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 95.87 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 95.83 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.83 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 95.81 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.56 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 95.53 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 95.45 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 95.45 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.45 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 95.41 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 95.22 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 95.04 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 94.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.92 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 94.69 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 94.45 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 94.38 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 94.08 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 93.57 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 92.9 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 92.64 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 92.55 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 92.34 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 92.17 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 92.15 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 91.69 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 90.46 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 89.63 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 89.62 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 88.93 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 88.48 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 88.23 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 88.05 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 87.36 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 87.31 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.98 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 86.7 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 86.58 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 86.19 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 86.14 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 85.71 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 85.16 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 84.87 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 84.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 84.5 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 83.55 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 83.26 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 81.35 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 80.59 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 80.51 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=8.5e-42 Score=395.23 Aligned_cols=358 Identities=51% Similarity=0.969 Sum_probs=291.9
Q ss_pred cccCCCCCCccCcceeecccCccccCCCCCCCCCCCHHHHHHHHHhhhchHhhhccCCChHHHHHHHhhcccCCCCCCCe
Q psy1288 33 MTKFEYPKARKNESLVDEYHGVKIPDPYGWMEDPDSEETKKFVDEENAISRPYLEDHPDRDKVKAELTKMWDYPKYSSPQ 112 (1012)
Q Consensus 33 ~~~~~~P~a~~~~~~~~~~hG~~~~Dpy~WLed~~~~~~~~~l~~qn~~t~~~l~~~~~~~~l~~~~~~~~~~~~~s~p~ 112 (1012)
|+.++||+++|+..+++++||+++.|||+||||.++|++++||++||+||+++|++.+.++.+.+++++++..++.++|.
T Consensus 1 ~~~~~yP~~~~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~wl~~eN~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~ 80 (430)
T d1qfma1 1 MLSFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHF 80 (430)
T ss_dssp CCCSCCCCCCCCTTCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHSSTHHHHHHHHHHHHTCSCEECCCE
T ss_pred CCCCCCCCCcCCCCeeeccCCCEEeeCchhhcCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhcCCceeeeE
Confidence 34567888877765669999999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
.+|+++||.+..+++++..+|++...++++++|+|+|++++++.+.+.+.++||||++|||+++.+|++.++|+++|+++
T Consensus 81 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t 160 (430)
T d1qfma1 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (430)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EeCCEEEEEEecCCCccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCc
Confidence 99999999999887888899999888899999999999999888888889999999999999999999999999999999
Q ss_pred CceeceeecceeeeeeEEeeCCCeEEEEecCCCC---Ccc-cCCCCCceEEEEe--------------e-----------
Q psy1288 193 GKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKS---KSK-KHSKKNRSSAYHL--------------T----------- 243 (1012)
Q Consensus 193 g~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~---~g~-~~~~~~~~l~~~~--------------~----------- 243 (1012)
|+.+...+.....++++|++|++.|+|+..+... .+. .+.....++++|. .
T Consensus 161 g~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~ 240 (430)
T d1qfma1 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240 (430)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred ceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec
Confidence 9998888877766889999999999999743211 000 0011111222221 0
Q ss_pred ------------ccc---------------cc-------e--------eeeeeecCCCEEEEEECCCCCCceEEEEeCCC
Q psy1288 244 ------------VNV---------------AP-------I--------TSQYITNEGPQFVFKTNKDAPNYRLITIDFDN 281 (1012)
Q Consensus 244 ------------~~~---------------~~-------i--------~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~ 281 (1012)
.+. .. . .+..+.++|+.||+++|.++++++|+.++++.
T Consensus 241 s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~ 320 (430)
T d1qfma1 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTD 320 (430)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTB
T ss_pred cCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCC
Confidence 000 00 0 02235668899999999999999999999998
Q ss_pred CcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecC
Q psy1288 282 FAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 282 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+....|+.|+++.+..++.......+++|++.+++++.++|.++++++++.......+.+++.+++.+++++.++|.+++
T Consensus 321 ~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss 400 (430)
T d1qfma1 321 PEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS 400 (430)
T ss_dssp CCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred CccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcC
Confidence 87778999999876666554444444899999999999999999997776654444557788788888888999999999
Q ss_pred CCCCcEEEEEeCCCCCCCCCCcceEEEEeccCCC
Q psy1288 362 FLQPTIIFHCNIPARVDPNSKLETSIFREIKVPD 395 (1012)
Q Consensus 362 ~~~p~~l~~~d~~~~~~~~g~~~~~~l~~~~~~~ 395 (1012)
+.+|+++|.+|+ ++++.+.+++++.++++
T Consensus 401 ~~tP~~~y~~Dl-----~t~~~~~~~~k~~~v~G 429 (430)
T d1qfma1 401 FLSPGIIYHCDL-----TKEELEPRVFREVTVKG 429 (430)
T ss_dssp SSCCCEEEEEET-----TSSSCCCEEEEECCCTT
T ss_pred CCCCCeEEEEEC-----CCCCcceeeEeccCCCC
Confidence 999999999999 46755567788766553
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.94 E-value=2.1e-25 Score=240.54 Aligned_cols=275 Identities=57% Similarity=1.024 Sum_probs=207.6
Q ss_pred CCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCc
Q psy1288 398 PSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 398 ~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g 477 (1012)
+++|.+|+|++++.||.+|++++++|++++++++.|+||++|||++.+..+.+......++...+++++..+.++....+
T Consensus 2 ~~~y~~e~v~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (280)
T d1qfma2 2 ASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYG 81 (280)
T ss_dssp GGGEEEEEEEEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTH
T ss_pred cccCEEEEEEEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccc
Confidence 45678899999999999999999999998888999999999999988888888776666777678899999988888777
Q ss_pred hhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceee
Q psy1288 478 ERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLI 557 (1012)
Q Consensus 478 ~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~ 557 (1012)
..+..............+...+..+.......+...++++|+|.||.++...+...++++++++...+ +.++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~- 157 (280)
T d1qfma2 82 ETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVG---VMDMLKFH- 157 (280)
T ss_dssp HHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESC---CCCTTTGG-
T ss_pred hhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeecc---ccchhhhc-
Confidence 77666655555556666777777788888888889999999999999999999999999999999888 33211100
Q ss_pred eecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCC
Q psy1288 558 VHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQG 637 (1012)
Q Consensus 558 ~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~ 637 (1012)
....+..+...................+|..++..
T Consensus 158 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 192 (280)
T d1qfma2 158 ---------------------------------------------KYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKL 192 (280)
T ss_dssp ---------------------------------------------GSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCC
T ss_pred ---------------------------------------------cccccccceecccCCCcccccccccccccccccch
Confidence 00000001111122222334445555566554432
Q ss_pred CCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 638 PDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 638 p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
. .....+.|++|++||+.|++||+.++.+++++|+++.......+++++|+++|++|||+.....+.++.+.++++||.
T Consensus 193 ~-~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~ 271 (280)
T d1qfma2 193 P-EADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIA 271 (280)
T ss_dssp C-SSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHH
T ss_pred h-hhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 011356778999999999999999999999999876433333488999999999999998776666788889999999
Q ss_pred HhCCC
Q psy1288 718 TSGPV 722 (1012)
Q Consensus 718 ~~l~~ 722 (1012)
++|+.
T Consensus 272 k~L~~ 276 (280)
T d1qfma2 272 RCLNI 276 (280)
T ss_dssp HHHTC
T ss_pred HhcCC
Confidence 99986
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=7.8e-25 Score=233.91 Aligned_cols=254 Identities=18% Similarity=0.163 Sum_probs=196.8
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-CCCcChh-HHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-QPGFSVT-KIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~-~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
..|++.+...||++|.+.+++|+++++.+++|+||++|||++... ...+... ...+++++||+|+.+|+||+++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~ 81 (258)
T d2bgra2 2 PSKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDK 81 (258)
T ss_dssp CEEEEEEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHH
T ss_pred CceeEEEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchH
Confidence 367888899999999999999999988889999999999844332 2233222 23456778999999999999999999
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeee
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVH 559 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~ 559 (1012)
|.......++.....|..++++++.++..+++++|+++|+|+||.+++.++...|+++.+++...+ +....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~---~~~~~------ 152 (258)
T d2bgra2 82 IMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP---VSRWE------ 152 (258)
T ss_dssp HHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESC---CCCGG------
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeec---ccccc------
Confidence 988887777777888999999999999999999999999999999999999999999998888877 21100
Q ss_pred cccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCC
Q psy1288 560 TMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPD 639 (1012)
Q Consensus 560 ~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~ 639 (1012)
..... .+...++.+......+.+...+|...+.
T Consensus 153 -----------------------------------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 185 (258)
T d2bgra2 153 -----------------------------------YYDSV---------YTERYMGLPTPEDNLDHYRNSTVMSRAE--- 185 (258)
T ss_dssp -----------------------------------GSBHH---------HHHHHHCCCSTTTTHHHHHHSCSGGGGG---
T ss_pred -----------------------------------ccccc---------ccchhcccccchhhHHHhhccccccccc---
Confidence 00000 0001122332233445677788887766
Q ss_pred cccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 640 ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 640 ~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
+.+.+|+|++||+.|++||+.++.+++.+|+.+ +++++++++|+++|++..... ..+....+.+||.++
T Consensus 186 ---~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~-------g~~~~~~~~~g~~H~~~~~~~-~~~~~~~i~~fl~~~ 254 (258)
T d2bgra2 186 ---NFKQVEYLLIHGTADDNVHFQQSAQISKALVDV-------GVDFQAMWYTDEDHGIASSTA-HQHIYTHMSHFIKQC 254 (258)
T ss_dssp ---GGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHH-------TCCCEEEEETTCCTTCCSHHH-HHHHHHHHHHHHHHH
T ss_pred ---ccccCChheeeecCCCcccHHHHHHHHHHHHHC-------CCCEEEEEECCCCCCCCCCcc-HHHHHHHHHHHHHHH
Confidence 344334999999999999999999999999999 899999999999999866433 234566778999999
Q ss_pred CCC
Q psy1288 720 GPV 722 (1012)
Q Consensus 720 l~~ 722 (1012)
+..
T Consensus 255 l~~ 257 (258)
T d2bgra2 255 FSL 257 (258)
T ss_dssp TTC
T ss_pred hcC
Confidence 764
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.92 E-value=4.6e-25 Score=236.03 Aligned_cols=249 Identities=24% Similarity=0.352 Sum_probs=196.4
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
..+.|+++|.||.+|+++++.|++. .++.|+||++|||+.......|... ...++++||+|+.+|+|+.+++|..|.
T Consensus 11 ~~~~v~~~s~dG~~i~~~l~~p~~~--~~~~Pviv~~HGG~~~~~~~~~~~~-~~~la~~G~~v~~~d~r~~~~~g~~~~ 87 (260)
T d2hu7a2 11 GSRLVWVESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTF-AASLAAAGFHVVMPNYRGSTGYGEEWR 87 (260)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTS--CSSEEEEEEECSSSSCCCCSSCCHH-HHHHHHHTCEEEEECCTTCSSSCHHHH
T ss_pred ceEEEEEECCCCCEEEEEEEeCCCC--CCCceEEEEECCCCccCCCccccHH-HHHHHhhccccccceeeeccccccccc
Confidence 5688999999999999999999763 4678999999998776666777654 455666899999999999999999998
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecc
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTM 561 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~ 561 (1012)
...........++|+.++++|+.++. ++.+++|.|+|+||.+++.++..+|+.+++++..+| +.++..++.
T Consensus 88 ~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~---~~~~~~~~~---- 158 (260)
T d2hu7a2 88 LKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGAS---VVDWEEMYE---- 158 (260)
T ss_dssp HTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESC---CCCHHHHHH----
T ss_pred cccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCccccccccccc---chhhhhhhc----
Confidence 88777777788899999999999875 678999999999999999999999999999999988 333211110
Q ss_pred cccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcc
Q psy1288 562 KDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDEL 641 (1012)
Q Consensus 562 ~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~ 641 (1012)
.. +. .+.. .+...++ ...+.+...+|..+++
T Consensus 159 ------------~~---------------------~~-~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~----- 189 (260)
T d2hu7a2 159 ------------LS---------------------DA-AFRN-----FIEQLTG-----GSREIMRSRSPINHVD----- 189 (260)
T ss_dssp ------------TC---------------------CH-HHHH-----HHHHHHC-----SCHHHHHHTCGGGCGG-----
T ss_pred ------------cc---------------------cc-cccc-----ccccccc-----cccccccccchhhccc-----
Confidence 00 00 0000 0000111 1234577889998887
Q ss_pred cCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 642 KGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 642 ~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
+.+.| +|++||..|..||+.++.+++.+|+.+ ++++.++++|+++|++....+ ..+.+...++||.++++
T Consensus 190 -~~~~P-~liihG~~D~~vp~~~~~~~~~~l~~~-------~~~~~~~~~~g~~H~~~~~e~-~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 190 -RIKEP-LALIHPQNDSRTPLKPLLRLMGELLAR-------GKTFEAHIIPDAGHAINTMED-AVKILLPAVFFLATQRE 259 (260)
T ss_dssp -GCCSC-EEEEEETTCSSSCSHHHHHHHHHHHHT-------TCCEEEEEETTCCSSCCBHHH-HHHHHHHHHHHHHHHHH
T ss_pred -ccCCC-ceeeecccCceecHHHHHHHHHHHHHC-------CCCeEEEEECcCCCCCCChHh-HHHHHHHHHHHHHHHhc
Confidence 67778 999999999999999999999999998 899999999999999875433 34666788899999864
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.2e-24 Score=226.86 Aligned_cols=241 Identities=16% Similarity=0.195 Sum_probs=175.9
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC-CCCCcChh-HHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS-LQPGFSVT-KIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~-~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
.||.+|+++++.|++++..++.|+||++|||++.. ....|... ...+++++||+|+++|+||++++|..|........
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~~ 89 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 89 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCT
T ss_pred eCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhccc
Confidence 39999999999999988888899999999985433 23444332 34578888999999999999999999988777777
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCCccccCcceeeeeccccc
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNPEISDCGRWLIVHTMKDC 564 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~~i~d~~~~~~~~~~~~~ 564 (1012)
+.....|+.++++++.++..+|++||+++|+|+||++++.++...++ .+.+.+...+ ++.+...
T Consensus 90 g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------- 157 (258)
T d1xfda2 90 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP---ITDFKLY--------- 157 (258)
T ss_dssp TTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESC---CCCTTSS---------
T ss_pred hhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeecccc---ceeeecc---------
Confidence 77788999999999999999999999999999999999888766554 4555555555 2111000
Q ss_pred ccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCC-ChHHHHHHHcCCcccCCCCCCcccC
Q psy1288 565 KNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPA-NSSQFEYLLGYSPLHNIQGPDELKG 643 (1012)
Q Consensus 565 ~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~-~~~~~~~~~~~sP~~~~~~p~~~~~ 643 (1012)
.. .... .+ .+.+. +. +.+...++..++. .
T Consensus 158 -----------------------~~-----~~~~-~~------------~~~~~~~~---~~~~~~s~~~~~~------~ 187 (258)
T d1xfda2 158 -----------------------AS-----AFSE-RY------------LGLHGLDN---RAYEMTKVAHRVS------A 187 (258)
T ss_dssp -----------------------BH-----HHHH-HH------------HCCCSSCC---SSTTTTCTHHHHT------S
T ss_pred -----------------------cc-----cccc-cc------------ccccccch---HHhhccchhhhhh------h
Confidence 00 0000 00 00000 00 0122233443333 2
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
...+++|++||+.|.+|++.++.+++++|+++ +.+++++++|+++|++..... ....+..+++|++++++
T Consensus 188 ~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~-------~~~~~~~~~p~~~H~~~~~~~-~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 188 LEEQQFLIIHPTADEKIHFQHTAELITQLIRG-------KANYSLQIYPDESHYFTSSSL-KQHLYRSIINFFVECFR 257 (258)
T ss_dssp CCSCEEEEEEETTCSSSCHHHHHHHHHHHHHT-------TCCCEEEEETTCCSSCCCHHH-HHHHHHHHHHHHTTTTC
T ss_pred hhcccccccccCCCCCcCHHHHHHHHHHHHHC-------CCCEEEEEECCCCCCCCCCcC-HHHHHHHHHHHHHHhhC
Confidence 33344999999999999999999999999998 899999999999999865433 23456778899998875
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=4.5e-18 Score=186.72 Aligned_cols=250 Identities=18% Similarity=0.173 Sum_probs=164.4
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE 478 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~ 478 (1012)
+.+..+.|.+++.||.+|.++++.|++. .++.|+||++||+..... +..... .++++||+|+.+|+||.|..+.
T Consensus 51 ~~~~~~~v~~~s~dG~~l~~~l~~P~~~--~~~~P~Vv~~hG~~~~~~---~~~~~~-~~a~~G~~v~~~D~rG~G~s~~ 124 (322)
T d1vlqa_ 51 KTVEAYDVTFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRG---FPHDWL-FWPSMGYICFVMDTRGQGSGWL 124 (322)
T ss_dssp SSEEEEEEEEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCCC---CGGGGC-HHHHTTCEEEEECCTTCCCSSS
T ss_pred CCeEEEEEEEECCCCcEEEEEEEeccCC--CCCccEEEEecCCCCCcC---cHHHHH-HHHhCCCEEEEeeccccCCCCC
Confidence 4456788999999999999999999873 567899999999765432 222222 3455799999999999886544
Q ss_pred hHHhhhhc-----------------CC----CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCce
Q psy1288 479 RWHDGGRL-----------------LN----KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLF 537 (1012)
Q Consensus 479 ~~~~~~~~-----------------~~----~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f 537 (1012)
........ .. ....+.|+.++++++..+..+++++++++|+|+||.+++.++...+ .+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~~ 203 (322)
T d1vlqa_ 125 KGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KA 203 (322)
T ss_dssp CCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SC
T ss_pred CccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-Cc
Confidence 32111000 00 0123568889999999999999999999999999999998888765 57
Q ss_pred eEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCC
Q psy1288 538 GAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSP 617 (1012)
Q Consensus 538 ~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p 617 (1012)
+++++.++ ...++. ....... ..+. ..... +.. ....
T Consensus 204 ~a~v~~~~--~~~~~~----------------~~~~~~~--------~~~~-------~~~~~---------~~~-~~~~ 240 (322)
T d1vlqa_ 204 KALLCDVP--FLCHFR----------------RAVQLVD--------THPY-------AEITN---------FLK-THRD 240 (322)
T ss_dssp CEEEEESC--CSCCHH----------------HHHHHCC--------CTTH-------HHHHH---------HHH-HCTT
T ss_pred cEEEEeCC--ccccHH----------------HHHhhcc--------ccch-------hhHHh---------hhh-cCcc
Confidence 78787766 011100 0000000 0000 00000 000 0011
Q ss_pred CChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCC
Q psy1288 618 ANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 697 (1012)
Q Consensus 618 ~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg 697 (1012)
......+.+..++|...+. ++++| +|++||..|..||+.++.+++++ . +.++.++++|+++|+
T Consensus 241 ~~~~~~~~~~~~d~~~~a~------~i~~P-~Lv~~G~~D~~vp~~~~~~~~~~---~-------~~~~~l~~~p~~~H~ 303 (322)
T d1vlqa_ 241 KEEIVFRTLSYFDGVNFAA------RAKIP-ALFSVGLMDNICPPSTVFAAYNY---Y-------AGPKEIRIYPYNNHE 303 (322)
T ss_dssp CHHHHHHHHHTTCHHHHHT------TCCSC-EEEEEETTCSSSCHHHHHHHHHH---C-------CSSEEEEEETTCCTT
T ss_pred hhhhHHHHhhhhhHHHHHh------cCCCC-EEEEEeCCCCCcCHHHHHHHHHH---C-------CCCeEEEEECCCCCC
Confidence 1223345566678877666 67888 99999999999999888765543 4 567899999999998
Q ss_pred CCCccccchhhhhHHHHHHHHhC
Q psy1288 698 GGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 698 ~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
++... .....++||.+.+
T Consensus 304 ~~~~~-----~~~~~~~~l~~~l 321 (322)
T d1vlqa_ 304 GGGSF-----QAVEQVKFLKKLF 321 (322)
T ss_dssp TTHHH-----HHHHHHHHHHHHH
T ss_pred Ccccc-----CHHHHHHHHHHHh
Confidence 75432 2234568998875
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=9.9e-18 Score=183.11 Aligned_cols=252 Identities=17% Similarity=0.112 Sum_probs=163.9
Q ss_pred CCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCc
Q psy1288 398 PSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 398 ~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g 477 (1012)
.+.+.+++|++++.||.+|.++++.|++ .++.|+||++||+.+... .|... ...++++||+|+.+|+||.|+..
T Consensus 51 ~~~~~~~~v~~~~~dg~~i~~~l~~P~~---~~~~P~vv~~HG~~~~~~--~~~~~-~~~la~~Gy~vi~~D~rG~G~s~ 124 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASYD--GEIHE-MVNWALHGYATFGMLVRGQQRSE 124 (318)
T ss_dssp CSSEEEEEEEEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCSG--GGHHH-HHHHHHTTCEEEEECCTTTSSSC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEecCC---CCCceEEEEecCCCCCcc--chHHH-HHHHHHCCCEEEEEeeCCCCCCC
Confidence 3456788999999999999999999987 578899999999865432 23333 44566789999999999998765
Q ss_pred hhHHhhhhcCC--------------CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEc
Q psy1288 478 ERWHDGGRLLN--------------KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQ 543 (1012)
Q Consensus 478 ~~~~~~~~~~~--------------~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 543 (1012)
..+........ ....+.|...+++++..++.+++.++++.|+|+||.+++..+...+.. .++++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~~-~~~~~~ 203 (318)
T d1l7aa_ 125 DTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIP-KAAVAD 203 (318)
T ss_dssp CCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSCC-SEEEEE
T ss_pred CCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCccc-ceEEEe
Confidence 43321110000 012346888888999999999999999999999999999998887654 555555
Q ss_pred cCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCC-ChHH
Q psy1288 544 VGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPA-NSSQ 622 (1012)
Q Consensus 544 ~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~-~~~~ 622 (1012)
.+ ...++.. ..... ...+... .... ....+... ....
T Consensus 204 ~~--~~~~~~~----------------~~~~~--------~~~~~~~----~~~~------------~~~~~~~~~~~~~ 241 (318)
T d1l7aa_ 204 YP--YLSNFER----------------AIDVA--------LEQPYLE----INSF------------FRRNGSPETEVQA 241 (318)
T ss_dssp SC--CSCCHHH----------------HHHHC--------CSTTTTH----HHHH------------HHHSCCHHHHHHH
T ss_pred cc--ccccHHH----------------Hhhcc--------cccccch----hhhh------------hhccccccccccc
Confidence 54 0111100 00000 0000000 0000 00111111 1112
Q ss_pred HHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc
Q psy1288 623 FEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 702 (1012)
Q Consensus 623 ~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~ 702 (1012)
+.....+++...++ +++.| +|++||..|..|++.++.++++++ +.++++.+++++||.+..
T Consensus 242 ~~~~~~~~~~~~~~------~i~~P-~Lii~G~~D~~vp~~~~~~~~~~l----------~~~~~l~~~~~~gH~~~~-- 302 (318)
T d1l7aa_ 242 MKTLSYFDIMNLAD------RVKVP-VLMSIGLIDKVTPPSTVFAAYNHL----------ETKKELKVYRYFGHEYIP-- 302 (318)
T ss_dssp HHHHHTTCHHHHGG------GCCSC-EEEEEETTCSSSCHHHHHHHHHHC----------CSSEEEEEETTCCSSCCH--
T ss_pred cccccccccccccc------cCCCC-EEEEEECCCCCcCHHHHHHHHHHc----------CCCcEEEEECCCCCCCcH--
Confidence 22333444444444 67888 999999999999999988776553 456889999999997643
Q ss_pred ccchhhhhHHHHHHHHhCC
Q psy1288 703 TKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 703 ~~~~~~~~~~~~fl~~~l~ 721 (1012)
+....+++||+++|+
T Consensus 303 ----~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 303 ----AFQTEKLAFFKQILK 317 (318)
T ss_dssp ----HHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhCC
Confidence 233457799999875
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.69 E-value=3.7e-16 Score=174.08 Aligned_cols=241 Identities=15% Similarity=0.120 Sum_probs=156.8
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
...++|.++. ||.+|+++++.|++ .++.|+||++||..+... .+. .....+.++||.|+.+|+||.|+.....
T Consensus 104 ~~~e~v~ip~-dg~~l~g~l~~P~~---~~~~P~Vi~~hG~~~~~e--~~~-~~~~~l~~~G~~vl~~D~~G~G~s~~~~ 176 (360)
T d2jbwa1 104 PPAERHELVV-DGIPMPVYVRIPEG---PGPHPAVIMLGGLESTKE--ESF-QMENLVLDRGMATATFDGPGQGEMFEYK 176 (360)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSS---SCCEEEEEEECCSSCCTT--TTH-HHHHHHHHTTCEEEEECCTTSGGGTTTC
T ss_pred CCeEEeecCc-CCcccceEEEecCC---CCCceEEEEeCCCCccHH--HHH-HHHHHHHhcCCEEEEEccccccccCccc
Confidence 3567888775 79999999999976 578899999999654332 222 3355677789999999999987542211
Q ss_pred HhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeec
Q psy1288 481 HDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHT 560 (1012)
Q Consensus 481 ~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~ 560 (1012)
........++.++++++.....+|+++|+++|+|+||++++.++...| +++++|+..+ +.++..+.
T Consensus 177 ------~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~---~~~~~~~~---- 242 (360)
T d2jbwa1 177 ------RIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGG---FSDLDYWD---- 242 (360)
T ss_dssp ------CSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESC---CSCSTTGG----
T ss_pred ------cccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcc---cccHHHHh----
Confidence 111122335667789999999999999999999999999999998877 5789898887 32211000
Q ss_pred ccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHH-HHHHHcCCcccCCCCCC
Q psy1288 561 MKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQ-FEYLLGYSPLHNIQGPD 639 (1012)
Q Consensus 561 ~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~-~~~~~~~sP~~~~~~p~ 639 (1012)
. ..|+ .... |....+.....+. ......++....+.
T Consensus 243 ---------------~--------~~~~------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 279 (360)
T d2jbwa1 243 ---------------L--------ETPL------TKES-----------WKYVSKVDTLEEARLHVHAALETRDVLS--- 279 (360)
T ss_dssp ---------------G--------SCHH------HHHH-----------HHHHTTCSSHHHHHHHHHHHTCCTTTGG---
T ss_pred ---------------h--------hhhh------hhHH-----------HHHhccCCchHHHHHHHHhhcchhhhHh---
Confidence 0 0000 0000 0001111111111 12223333333333
Q ss_pred cccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 640 ELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 640 ~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
++++| +|++||.+|. ||+.++.+++.++... .+.+.++++++|..... .......+.+||.+.
T Consensus 280 ---~i~~P-~Lii~G~~D~-vp~~~~~~l~~~~~~~---------~~~l~~~~~g~H~~~~~---~~~~~~~i~dWl~~~ 342 (360)
T d2jbwa1 280 ---QIACP-TYILHGVHDE-VPLSFVDTVLELVPAE---------HLNLVVEKDGDHCCHNL---GIRPRLEMADWLYDV 342 (360)
T ss_dssp ---GCCSC-EEEEEETTSS-SCTHHHHHHHHHSCGG---------GEEEEEETTCCGGGGGG---TTHHHHHHHHHHHHH
T ss_pred ---hCCCC-EEEEEeCCCC-cCHHHHHHHHHhcCCC---------CeEEEEECCCCcCCCcC---hHHHHHHHHHHHHHH
Confidence 78899 9999999996 7988888887766433 46788889999964322 123345567899999
Q ss_pred CCC
Q psy1288 720 GPV 722 (1012)
Q Consensus 720 l~~ 722 (1012)
|..
T Consensus 343 L~~ 345 (360)
T d2jbwa1 343 LVA 345 (360)
T ss_dssp HTS
T ss_pred hcc
Confidence 865
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.66 E-value=3.3e-15 Score=163.42 Aligned_cols=262 Identities=18% Similarity=0.155 Sum_probs=154.5
Q ss_pred CCCCCceEEEEEECCCCc-eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChh-HHHHHHhCCeEEEEEcCCCCC
Q psy1288 397 DPSLFETKQVFYPSKDGT-KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVT-KIVFLRDFNGIYAIPNIRGGG 474 (1012)
Q Consensus 397 ~~~~~~~~~v~~~s~DG~-~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~d~RG~g 474 (1012)
.......+.+.++++||. .|++.+++|++ .+++.|+||++|||............ ...++.+.|++|+.+|||...
T Consensus 44 ~~~~v~~~~~~~~~~~g~~~i~~~~~~P~~--~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~p 121 (317)
T d1lzla_ 44 SFDGVSLRELSAPGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAP 121 (317)
T ss_dssp CCTTEEEEEEEECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTT
T ss_pred CCCCceEEEEEEecCCCCceEEEEEECCCC--CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccc
Confidence 344556788999999986 69999999986 35688999999998544333333323 334444559999999999866
Q ss_pred CCchhHHhhhhcCCCcchHhHHHHHHHHHHHc---CCCCCCcEEEEecChHHHHHHHHHhhCCC----ceeEEEEccCCC
Q psy1288 475 EYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS---GYTQSSRLAIQGGSNGGLLTAACINQRPD----LFGAAIVQVGNP 547 (1012)
Q Consensus 475 ~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~ 547 (1012)
+. .....++|+.+++.|+.++ -.+|+++|+++|+|+||++++.++.+.++ .....+...+
T Consensus 122 e~-----------~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~-- 188 (317)
T d1lzla_ 122 ET-----------TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIP-- 188 (317)
T ss_dssp TS-----------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESC--
T ss_pred cc-----------cccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccc--
Confidence 43 1233467888888888765 23789999999999999999887765322 1122222222
Q ss_pred ccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHH
Q psy1288 548 EISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLL 627 (1012)
Q Consensus 548 ~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~ 627 (1012)
...+. .....+.+.. ..++.. ..+.........+ .......++.. ..
T Consensus 189 ~~~~~-------------~~~~s~~~~~---------~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~---~~ 235 (317)
T d1lzla_ 189 ELDDR-------------LETVSMTNFV---------DTPLWH----RPNAILSWKYYLG----ESYSGPEDPDV---SI 235 (317)
T ss_dssp CCCTT-------------CCSHHHHHCS---------SCSSCC----HHHHHHHHHHHHC----TTCCCTTCSCC---CT
T ss_pred ccccc-------------cccccccccc---------ccchhh----hhhhHHHHhhhcc----ccccCCCCchh---cc
Confidence 00000 0000000000 000000 0000000000000 00000000000 00
Q ss_pred cCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc--cc
Q psy1288 628 GYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT--KQ 705 (1012)
Q Consensus 628 ~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~--~~ 705 (1012)
..+|..... ....|++|++||+.|. ...++.++.++|+++ |++++++++++++|+|..... ..
T Consensus 236 ~~~~~~~~~------~~~~pp~li~~g~~D~--l~~~~~~~~~~L~~~-------G~~v~~~~~~g~~H~f~~~~~~~~~ 300 (317)
T d1lzla_ 236 YAAPSRATD------LTGLPPTYLSTMELDP--LRDEGIEYALRLLQA-------GVSVELHSFPGTFHGSALVATAAVS 300 (317)
T ss_dssp TTCGGGCSC------CTTCCCEEEEEETTCT--THHHHHHHHHHHHHT-------TCCEEEEEETTCCTTGGGSTTSHHH
T ss_pred ccCchhhhh------ccCCCCeEEEECCCCC--CHHHHHHHHHHHHHC-------CCCEEEEEECcCccCCcccCCchHH
Confidence 011211111 2456779999999994 567899999999999 999999999999999853221 22
Q ss_pred hhhhhHHHHHHHHhCC
Q psy1288 706 FPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 706 ~~~~~~~~~fl~~~l~ 721 (1012)
.+...+.++|+.++|+
T Consensus 301 ~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 301 ERGAAEALTAIRRGLR 316 (317)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3556778899998875
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.65 E-value=5.1e-16 Score=161.87 Aligned_cols=212 Identities=16% Similarity=0.181 Sum_probs=142.4
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH--
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW-- 480 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~-- 480 (1012)
.|.|.+++.||..+.+++..|.+ ++.|+||++|++.+... +.......++++||.|+++|..+.+..+...
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~----~~~P~vl~~h~~~G~~~---~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~ 75 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK----APAPVIVIAQEIFGVNA---FMRETVSWLVDQGYAAVCPDLYARQAPGTALDP 75 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS----SSEEEEEEECCTTBSCH---HHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCT
T ss_pred ceEEEEEcCCCCEEEEEEECCCC----CCceEEEEeCCCCCCCH---HHHHHHHHHHhcCCcceeeeeccCCCcCcccCh
Confidence 34567899999999999999965 68999999998754321 1123456677789999999987655432211
Q ss_pred ---H--h----hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCcccc
Q psy1288 481 ---H--D----GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISD 551 (1012)
Q Consensus 481 ---~--~----~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d 551 (1012)
. . ............|+.++++++...+. +..+|+++|+|+||.++..++.+ +. +.++++..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~------ 146 (233)
T d1dina_ 76 QDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYG------ 146 (233)
T ss_dssp TSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESC------
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceeccccc------
Confidence 0 0 00111122346788889999987765 45799999999999999888876 33 455555555
Q ss_pred CcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCc
Q psy1288 552 CGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSP 631 (1012)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP 631 (1012)
. + .. ++
T Consensus 147 -------------------~---------------~-------~~---------------------------------~~ 152 (233)
T d1dina_ 147 -------------------V---------------G-------LE---------------------------------KQ 152 (233)
T ss_dssp -------------------S---------------C-------GG---------------------------------GG
T ss_pred -------------------c---------------c-------cc---------------------------------cc
Confidence 0 0 00 00
Q ss_pred ccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc------
Q psy1288 632 LHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ------ 705 (1012)
Q Consensus 632 ~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~------ 705 (1012)
.... ++++.| +|++||..|+.||......+.+.+ +. +..+++++||+++|||.......
T Consensus 153 ~~~~------~~i~~P-vl~~~G~~D~~vp~e~~~~~~~~~-~~-------~~~~~~~~y~ga~HgF~~~~~~~y~~~aa 217 (233)
T d1dina_ 153 LNKV------PEVKHP-ALFHMGGQDHFVPAPSRQLITEGF-GA-------NPLLQVHWYEEAGHSFARTSSSGYVASAA 217 (233)
T ss_dssp GGGG------GGCCSC-EEEEEETTCTTSCHHHHHHHHHHH-TT-------CTTEEEEEETTCCTTTTCTTSTTCCHHHH
T ss_pred hhhh------hccCCc-ceeeecccccCCCHHHHHHHHHHH-hc-------CCCEEEEEECCCCcCCCCCCCccCCHHHH
Confidence 0111 145677 999999999999988776655444 45 67899999999999986433222
Q ss_pred hhhhhHHHHHHHHh
Q psy1288 706 FPLTIPVIYFYLTS 719 (1012)
Q Consensus 706 ~~~~~~~~~fl~~~ 719 (1012)
...+..+++||...
T Consensus 218 ~~a~~r~~~ffa~~ 231 (233)
T d1dina_ 218 ALANERTLDFLAPL 231 (233)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcC
Confidence 12245667777643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3e-14 Score=151.08 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=161.4
Q ss_pred CEEEEEEEcC-CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc
Q psy1288 116 DHYFFFHNTG-LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK 194 (1012)
Q Consensus 116 ~~~yy~~~~~-~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~ 194 (1012)
.+++|+.+.. ++....||+++..+...++|++ +...+..|+|||||++|||+....+.. .+++++.+++.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~-------~~~~~~sP~wSPDGk~IAf~~~~~~~~--~~~~~~~~~~~ 74 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-------SPQPLMSPAWSPDGSKLAYVTFESGRS--ALVIQTLANGA 74 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEE-------ESSCEEEEEECTTSSEEEEEECTTSSC--EEEEEETTTCC
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEec-------CCCceeeeEECCCCCEEEEEEeeccCc--ceeeeecccCc
Confidence 5788988764 4444689999999989999987 333467899999999999998876654 89999999999
Q ss_pred eeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec---------cccceeeeeeecCCCEEEEEE
Q psy1288 195 EYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV---------NVAPITSQYITNEGPQFVFKT 265 (1012)
Q Consensus 195 ~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~---------~~~~i~~~~~s~dg~~l~~~t 265 (1012)
..+.+........+.|||||+.|+|....... ..+...... .......+.++++++.+++..
T Consensus 75 ~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (269)
T d2hqsa1 75 VRQVASFPRHNGAPAFSPDGSKLAFALSKTGS---------LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTS 145 (269)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECTTSS---------CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred eeEEeeeecccccceecCCCCeeeEeeecCCc---------cceeecccccccceeeeeccccccccccccccccceecc
Confidence 87776666556789999999999998754211 111111100 001112345888999999988
Q ss_pred CCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEe
Q psy1288 266 NKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVG 345 (1012)
Q Consensus 266 n~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~ 345 (1012)
.+.. ...++..+++... ...+... ...........+++.+++....++...+++++...+.. +.+... +....
T Consensus 146 ~~~g-~~~i~~~~~~~~~---~~~~~~~-~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-~~~~~ 218 (269)
T d2hqsa1 146 DQAG-RPQVYKVNINGGA---PQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSST-FLDET 218 (269)
T ss_dssp CTTS-SCEEEEEETTSSC---CEECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCS-SSCEE
T ss_pred cccC-CceEeeeeccccc---ceeeecc-cccccccccccccceeEEEeecCCceeeeEeecccccc-eEeecC-ccccc
Confidence 7653 5679999987765 2334332 23333333445667888888888889999999865443 333332 33346
Q ss_pred ecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 346 FSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 346 ~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+.|||||+.|+|..+. .....||++++
T Consensus 219 p~~SPDG~~i~f~s~~-~~~~~l~~~~~ 245 (269)
T d2hqsa1 219 PSLAPNGTMVIYSSSQ-GMGSVLNLVST 245 (269)
T ss_dssp EEECTTSSEEEEEEEE-TTEEEEEEEET
T ss_pred eEECCCCCEEEEEEcC-CCCcEEEEEEC
Confidence 7899999999998654 34568999999
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.62 E-value=1.7e-15 Score=168.47 Aligned_cols=260 Identities=16% Similarity=0.115 Sum_probs=154.8
Q ss_pred CCCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc-C-hhHHHHHHhCCeEEEEEcCCCCCC
Q psy1288 398 PSLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF-S-VTKIVFLRDFNGIYAIPNIRGGGE 475 (1012)
Q Consensus 398 ~~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~-~-~~~~~~l~~~G~~v~~~d~RG~g~ 475 (1012)
......+...+.+.||..|.+.++.|++. +++.|+||++|||......... . ......++++|++|+.+|||...+
T Consensus 74 ~~~v~~~~~~i~~~dg~~i~~~iy~P~~~--~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~ 151 (358)
T d1jkma_ 74 RDDVETSTETILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWT 151 (358)
T ss_dssp CCCEEEEEEEEECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEE
T ss_pred CCCccEEEEEEeCCCCCEEEEEEEecCCC--CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccccc
Confidence 34456778889999999999999999873 5678999999999544333222 1 123456667899999999998643
Q ss_pred CchhHHhhhhcCCCcchHhHHHHHHHHHHHcC-CCCCCcEEEEecChHHHHHHHHHhh-----CCCceeEEEEccCCCcc
Q psy1288 476 YGERWHDGGRLLNKQNVFDDFQCAAEYLIASG-YTQSSRLAIQGGSNGGLLTAACINQ-----RPDLFGAAIVQVGNPEI 549 (1012)
Q Consensus 476 ~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~-----~p~~f~a~v~~~~~~~i 549 (1012)
.. ........++|+.++++|+.++. ..++++|+|+|.|+||.+++.++.. ....+.+.+...| +
T Consensus 152 ~~-------pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p---~ 221 (358)
T d1jkma_ 152 AE-------GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIP---Y 221 (358)
T ss_dssp TT-------EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESC---C
T ss_pred cc-------ccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccc---e
Confidence 21 11223456889999999998763 3578999999999999998776533 1234566777666 1
Q ss_pred ccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcC
Q psy1288 550 SDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGY 629 (1012)
Q Consensus 550 ~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~ 629 (1012)
.+. ......+................++. ......+..|
T Consensus 222 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 260 (358)
T d1jkma_ 222 ISG------------GYAWDHERRLTELPSLVENDGYFIEN-----------------------------GGMALLVRAY 260 (358)
T ss_dssp CCC------------CTTSCHHHHHHHCTHHHHTTTSSSCH-----------------------------HHHHHHHHHH
T ss_pred ecc------------ccCccchhhcccccchhcccccccch-----------------------------hhhhhHHhhc
Confidence 110 00000000000000000000000000 0000011111
Q ss_pred --------CcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCc
Q psy1288 630 --------SPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 701 (1012)
Q Consensus 630 --------sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~ 701 (1012)
+|.........-.....|++||+||+.|+. ..++..++.+|+++ |+++++.++++++|||...
T Consensus 261 ~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l--~~e~~~~~~~L~~a-------Gv~v~~~~~~g~~Hgf~~~ 331 (358)
T d1jkma_ 261 DPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPL--RDEGIAFARRLARA-------GVDVAARVNIGLVHGADVI 331 (358)
T ss_dssp SSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTT--HHHHHHHHHHHHHT-------TCCEEEEEETTCCTTHHHH
T ss_pred CCccCCccCccccccccchhhccCCCCEEEEECCCCCC--HHHHHHHHHHHHHC-------CCcEEEEEECCCccchhhh
Confidence 111110000000123578899999999964 46889999999999 9999999999999997321
Q ss_pred cc----cch-hhhhHHHHHHHHh
Q psy1288 702 TT----KQF-PLTIPVIYFYLTS 719 (1012)
Q Consensus 702 ~~----~~~-~~~~~~~~fl~~~ 719 (1012)
.. +.. +.+.++..|+..+
T Consensus 332 ~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 332 FRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHH
Confidence 11 112 2345566777654
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.61 E-value=8.5e-15 Score=155.11 Aligned_cols=191 Identities=16% Similarity=0.013 Sum_probs=140.3
Q ss_pred EEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHH
Q psy1288 417 PMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDF 496 (1012)
Q Consensus 417 ~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~ 496 (1012)
.+.++.|.+. .+++.|+||++||+.+... .+. .+...|+++||+|+.+|.+|..+....+ ..|+
T Consensus 38 ~~~ly~P~~~-~~g~~P~Vv~~HG~~g~~~--~~~-~~a~~lA~~Gy~V~~~d~~~~~~~~~~~------------~~d~ 101 (260)
T d1jfra_ 38 GGTIYYPTST-ADGTFGAVVISPGFTAYQS--SIA-WLGPRLASQGFVVFTIDTNTTLDQPDSR------------GRQL 101 (260)
T ss_dssp CEEEEEESCC-TTCCEEEEEEECCTTCCGG--GTT-THHHHHHTTTCEEEEECCSSTTCCHHHH------------HHHH
T ss_pred CEEEEEcCCC-CCCCccEEEEECCCCCCHH--HHH-HHHHHHHhCCCEEEEEeeCCCcCCchhh------------HHHH
Confidence 4678889763 3577899999999765443 222 2456788899999999999876543221 3577
Q ss_pred HHHHHHHHHc----CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCccccc
Q psy1288 497 QCAAEYLIAS----GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFC 572 (1012)
Q Consensus 497 ~a~~~~l~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~ 572 (1012)
.++++++.+. ..+|++||+++|+|+||.+++.++...+ +++++|+..+ +.
T Consensus 102 ~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~-------------------------~~ 155 (260)
T d1jfra_ 102 LSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTG-------------------------WN 155 (260)
T ss_dssp HHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESC-------------------------CC
T ss_pred HHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeec-------------------------cc
Confidence 7888888875 4589999999999999999999988865 5778888777 00
Q ss_pred ccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEE
Q psy1288 573 DLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLM 652 (1012)
Q Consensus 573 dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLii 652 (1012)
+..... +.++| +|++
T Consensus 156 ----------------------------------------------------------~~~~~~------~~~~P-~l~i 170 (260)
T d1jfra_ 156 ----------------------------------------------------------TDKTWP------ELRTP-TLVV 170 (260)
T ss_dssp ----------------------------------------------------------SCCCCT------TCCSC-EEEE
T ss_pred ----------------------------------------------------------cccccc------ccccc-eeEE
Confidence 000111 35667 9999
Q ss_pred eeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCCC
Q psy1288 653 TADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 653 hG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
||..|..+|+.+..+...++..+ +.+..+..+++++|++....+. .....+++||+++|+..
T Consensus 171 ~G~~D~~vp~~~~~~~~~~~~~~-------~~~~~~~~i~ga~H~~~~~~~~--~~~~~~~~wl~~~L~~d 232 (260)
T d1jfra_ 171 GADGDTVAPVATHSKPFYESLPG-------SLDKAYLELRGASHFTPNTSDT--TIAKYSISWLKRFIDSD 232 (260)
T ss_dssp EETTCSSSCTTTTHHHHHHHSCT-------TSCEEEEEETTCCTTGGGSCCH--HHHHHHHHHHHHHHSCC
T ss_pred ecCCCCCCCHHHHHHHHHHhccc-------CCCEEEEEECCCccCCCCCChH--HHHHHHHHHHHHHhcCc
Confidence 99999999998766665555545 7788999999999998655443 23345679999998764
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.61 E-value=3.4e-15 Score=167.42 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=114.0
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCC-----CCCCCCCc---ChhHHHHHHhCCeEEEEEcC
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGF-----AVSLQPGF---SVTKIVFLRDFNGIYAIPNI 470 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~-----~~~~~~~~---~~~~~~~l~~~G~~v~~~d~ 470 (1012)
..+..+.|.++.+||++|.+.+++|++ .++.|+||..|+-. .....+.. .....++++++||+|+.+|.
T Consensus 20 ~~~~~~~v~i~~rDG~~L~~~v~~P~~---~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~ 96 (381)
T d1mpxa2 20 NDYIKREVMIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDV 96 (381)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEEC
T ss_pred cCceEEEEEEECCCCCEEEEEEEEeCC---CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEec
Confidence 345678899999999999999999987 57899999987521 11111111 11234567778999999999
Q ss_pred CCCCCCchhHHhhh-----hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 471 RGGGEYGERWHDGG-----RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 471 RG~g~~g~~~~~~~-----~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
||.+..+..|...+ ..........|+.++++|+.++...+..||+++|+|+||+++++++...|..++|+|+.++
T Consensus 97 RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~ 176 (381)
T d1mpxa2 97 RGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESP 176 (381)
T ss_dssp TTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred CccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeecc
Confidence 99887766554322 1223345688999999999999888889999999999999999999888999999999998
Q ss_pred CCccccC
Q psy1288 546 NPEISDC 552 (1012)
Q Consensus 546 ~~~i~d~ 552 (1012)
++|.
T Consensus 177 ---~~d~ 180 (381)
T d1mpxa2 177 ---MIDG 180 (381)
T ss_dssp ---CCCT
T ss_pred ---cccc
Confidence 6664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.59 E-value=1.5e-13 Score=146.24 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=147.0
Q ss_pred Ceee--CCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCc-eEEEEE
Q psy1288 111 PQRQ--GDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSD-WTSMHF 187 (1012)
Q Consensus 111 p~~d--G~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~-~~~L~v 187 (1012)
.+|| |++++|++. ..||+++..+++.++|++ +......++|||||++|||+....+.. ..+||+
T Consensus 6 ~sPdi~G~~v~f~~~------~dl~~~d~~~g~~~~Lt~-------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 6 LNPDIHGDRIIFVCC------DDLWEHDLKSGSTRKIVS-------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp EEEEEETTEEEEEET------TEEEEEETTTCCEEEEEC-------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred cCCCCCCCEEEEEeC------CcEEEEECCCCCEEEEec-------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 3688 999999863 259999999999999988 445678899999999999998876643 468999
Q ss_pred EECCCCceeceeeccee-------eeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc-------cceeeee
Q psy1288 188 KDVATGKEYPEVLHRLK-------FVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV-------APITSQY 253 (1012)
Q Consensus 188 ~dl~tg~~~~~t~~~~~-------~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~-------~~i~~~~ 253 (1012)
+++.+|+.++++..... ...+.|+|||+.|+|+...... .....++....+. .......
T Consensus 73 ~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (281)
T d1k32a2 73 YNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF-------SSMTCLYRVENDGINFVPLNLGPATHI 145 (281)
T ss_dssp EETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSS-------TTCCEEEEEEGGGTEEEECCSCSCSEE
T ss_pred EEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCC-------ccceeeeeecCCCceeEEecCCcccee
Confidence 99999998877644321 2567899999999998654211 0111111111111 1111234
Q ss_pred eecCCCEEEEEECCCCCC--------ceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEE
Q psy1288 254 ITNEGPQFVFKTNKDAPN--------YRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLH 325 (1012)
Q Consensus 254 ~s~dg~~l~~~tn~~~~~--------~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~ 325 (1012)
+.++++.+++........ ............ ...++... ... ....... +.+++....++..+|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~ 219 (281)
T d1k32a2 146 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA---FKKIVDMS-THV-SSPVIVG-HRIYFITDIDGFGQIYST 219 (281)
T ss_dssp EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE---EEEEECCS-SCC-EEEEEET-TEEEEEECTTSSCEEEEE
T ss_pred eecCCCeEEEeeccccceeeeeccCCcceeeeeccccc---eeeccCCc-ccc-ceeeeec-cccceecccccccceEEE
Confidence 677777777765432111 011111111111 11122111 111 1222233 677777777888999999
Q ss_pred ecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeCCCCCCCCCCcceEEE
Q psy1288 326 DLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIPARVDPNSKLETSIF 388 (1012)
Q Consensus 326 dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~~~~~~~g~~~~~~l 388 (1012)
++++++ .+.++.. ... ...++|||+.|+|... .+||++|+ ++| +.+.+
T Consensus 220 d~~g~~-~~~lt~~~~~~--~~~~SpDG~~I~f~~~-----~~l~~~d~-----~~g--~~~~i 268 (281)
T d1k32a2 220 DLDGKD-LRKHTSFTDYY--PRHLNTDGRRILFSKG-----GSIYIFNP-----DTE--KIEKI 268 (281)
T ss_dssp ETTSCS-CEECCCCCSSC--EEEEEESSSCEEEEET-----TEEEEECT-----TTC--CEEEC
T ss_pred eCCCCc-eEEeecCCCcc--cccCcCCCCEEEEEeC-----CEEEEEEC-----CCC--CEEEe
Confidence 996544 4556543 222 2357899999999764 37999999 466 44444
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.56 E-value=6.7e-15 Score=155.56 Aligned_cols=183 Identities=11% Similarity=0.072 Sum_probs=125.6
Q ss_pred EEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHH
Q psy1288 418 MFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQ 497 (1012)
Q Consensus 418 ~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~ 497 (1012)
.-++.|++ .+.|+||++|||+...............|.++|++|+.+|+|...+.. .....+|+.
T Consensus 52 lDiy~P~~----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~-----------~p~~~~d~~ 116 (261)
T d2pbla1 52 FDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-----------ISEITQQIS 116 (261)
T ss_dssp EEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC-----------HHHHHHHHH
T ss_pred EEEeccCC----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeeccccccccccc-----------CchhHHHHH
Confidence 45677765 467999999999765544322222345666789999999999766431 123467999
Q ss_pred HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC------CceeEEEEccCCCccccCcceeeeecccccccCcccc
Q psy1288 498 CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP------DLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHF 571 (1012)
Q Consensus 498 a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~ 571 (1012)
++++|+.++. +++|+|+|+|+||+++++++.... ..+++++...+ ++++.
T Consensus 117 ~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------ 172 (261)
T d2pbla1 117 QAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISP---LSDLR------------------ 172 (261)
T ss_dssp HHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESC---CCCCG------------------
T ss_pred HHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhcccc---ccccc------------------
Confidence 9999999874 589999999999999987765432 24677777777 32210
Q ss_pred cccCCCCcccccCCCCcchhhhhhhhhhhccccccccccc-cccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEE
Q psy1288 572 CDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWE-SDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATL 650 (1012)
Q Consensus 572 ~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~-~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vL 650 (1012)
.+ .. .+. ..++. + .+.+...||+.++. ..+ |++|
T Consensus 173 ----~~-----------~~------------------~~~~~~~~~--~---~~~~~~~SP~~~~~------~~~-~P~l 207 (261)
T d2pbla1 173 ----PL-----------LR------------------TSMNEKFKM--D---ADAAIAESPVEMQN------RYD-AKVT 207 (261)
T ss_dssp ----GG-----------GG------------------STTHHHHCC--C---HHHHHHTCGGGCCC------CCS-CEEE
T ss_pred ----hh-----------hh------------------hhhcccccC--C---HHHHHHhCchhhcc------cCC-CeEE
Confidence 00 00 000 01111 1 23466789998877 344 4499
Q ss_pred EEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCC
Q psy1288 651 LMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 696 (1012)
Q Consensus 651 iihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gH 696 (1012)
++||+.|+.++..++.++.++|+.. ..+.++++|
T Consensus 208 i~~G~~D~~~~~~qs~~~~~~l~~~------------~~~~~~~~H 241 (261)
T d2pbla1 208 VWVGGAERPAFLDQAIWLVEAWDAD------------HVIAFEKHH 241 (261)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHTCE------------EEEETTCCT
T ss_pred EEEecCCCchHHHHHHHHHHHhCCC------------ceEeCCCCc
Confidence 9999999999999999888887644 556788888
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.56 E-value=2.2e-14 Score=156.28 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=141.2
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhH-HHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTK-IVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
..++.+++.+++| .|++.+|.|++ +.|+||++|||.....+....... ..++++.|++|+.+|||.+.+.
T Consensus 54 ~~~~~~~i~~~~g-~i~~~iy~P~~-----~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~--- 124 (311)
T d1jjia_ 54 ERVEDRTIKGRNG-DIRVRVYQQKP-----DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH--- 124 (311)
T ss_dssp SEEEEEEEEETTE-EEEEEEEESSS-----SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTS---
T ss_pred ceEEEEEEeCCCC-cEEEEEEcCCC-----CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccc---
Confidence 3567788888888 79999999864 459999999995444333332223 3444556999999999987653
Q ss_pred HHhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC----CCceeEEEEccCCCccccC
Q psy1288 480 WHDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR----PDLFGAAIVQVGNPEISDC 552 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~~~~i~d~ 552 (1012)
.....++|+.++++|+.++. .+|++||+++|.|+||.+++.++... .....+.+...| +.++
T Consensus 125 --------~~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p---~~~~ 193 (311)
T d1jjia_ 125 --------KFPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYP---VVNF 193 (311)
T ss_dssp --------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESC---CCCS
T ss_pred --------ccchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecc---eeee
Confidence 22345678899999988763 47899999999999999887765332 234566777766 2221
Q ss_pred cceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcc
Q psy1288 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPL 632 (1012)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~ 632 (1012)
.. ......... ...++... ...... +......... ......||.
T Consensus 194 ~~------------~~~~~~~~~--------~~~~~~~~-----~~~~~~-------~~~~~~~~~~----~~~~~~sp~ 237 (311)
T d1jjia_ 194 VA------------PTPSLLEFG--------EGLWILDQ-----KIMSWF-------SEQYFSREED----KFNPLASVI 237 (311)
T ss_dssp SS------------CCHHHHHTS--------SSCSSCCH-----HHHHHH-------HHHHCSSGGG----GGCTTTSGG
T ss_pred cc------------Ccccccccc--------cccccccH-----HHhhhh-------hhhccccccc----ccccccchh
Confidence 00 000000000 00000000 000000 0000000000 000123555
Q ss_pred cCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 633 HNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 633 ~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
.... ...|++|++||+.|.. ..++..+.++|+++ |+++++.++++++|+|..
T Consensus 238 ~~~~-------~~~pP~li~~g~~D~l--~d~~~~~~~~L~~~-------Gv~v~~~~~~g~~H~F~~ 289 (311)
T d1jjia_ 238 FADL-------ENLPPALIITAEYDPL--RDEGEVFGQMLRRA-------GVEASIVRYRGVLHGFIN 289 (311)
T ss_dssp GSCC-------TTCCCEEEEEEEECTT--HHHHHHHHHHHHHT-------TCCEEEEEEEEEETTGGG
T ss_pred hccc-------ccCCCEEEEEcCCCCC--hHHHHHHHHHHHHC-------CCCEEEEEECCCCCcccc
Confidence 4433 4567799999999965 45889999999999 999999999999999853
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.56 E-value=8.2e-14 Score=157.27 Aligned_cols=295 Identities=13% Similarity=0.100 Sum_probs=173.3
Q ss_pred CCCCCCCceEEEEEECC-----CCc--eEEEEEEEeCCCCCCCCCcEEEEEcCCCCC-----------------------
Q psy1288 395 DFDPSLFETKQVFYPSK-----DGT--KIPMFILSRKGAQLDGNNPCILYGYGGFAV----------------------- 444 (1012)
Q Consensus 395 ~~~~~~~~~~~v~~~s~-----DG~--~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~----------------------- 444 (1012)
.|+.+....|.+++.++ ||+ +|.+.+++|++ .++.|+|+..+--...
T Consensus 15 ~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~---~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (405)
T d1lnsa3 15 TFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSH 91 (405)
T ss_dssp CSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSE
T ss_pred eecCCCceEeEEEEeCCCCCCCCCCEeEEEEEEEccCC---CCCceEEEEeCCcCCCCcccccccccccccccccccccc
Confidence 45555556677777766 899 59999999987 4578998865431100
Q ss_pred ---------------------------CCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHH
Q psy1288 445 ---------------------------SLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQ 497 (1012)
Q Consensus 445 ---------------------------~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~ 497 (1012)
.....+.....++++++||+|+..|.||.++.+..|.. ......+|..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~-----~~~~e~~D~~ 166 (405)
T d1lnsa3 92 EIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTS-----GDYQQIYSMT 166 (405)
T ss_dssp ECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCT-----TSHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcccc-----CChhhhhhHH
Confidence 00011222345677789999999999999988766543 2234567899
Q ss_pred HHHHHHHHcCCCC--------------CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccc
Q psy1288 498 CAAEYLIASGYTQ--------------SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKD 563 (1012)
Q Consensus 498 a~~~~l~~~~~~d--------------~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~ 563 (1012)
++++|+..+...+ ..||+++|.|+||+++..++...|..++|++...+ ++|+.+++...+...
T Consensus 167 ~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~---~~d~y~~~~~~G~~~ 243 (405)
T d1lnsa3 167 AVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAG---ISSWYNYYRENGLVR 243 (405)
T ss_dssp HHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESC---CSBHHHHHBSSSSBC
T ss_pred HHHHHHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCc---cccHHHHhhcCCccc
Confidence 9999998754322 24899999999999999999888888999999998 666533221111000
Q ss_pred cccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccC
Q psy1288 564 CKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKG 643 (1012)
Q Consensus 564 ~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~ 643 (1012)
.... +.......+.............. ......+... ....+...+.... ..-+.+...++...+. +
T Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~--~~d~~w~~~s~~~~~~------~ 310 (405)
T d1lnsa3 244 SPGG-FPGEDLDVLAALTYSRNLDGADF---LKGNAEYEKR-LAEMTAALDRKSG--DYNQFWHDRNYLINTD------K 310 (405)
T ss_dssp CCTT-CTTCCHHHHHHHHCGGGGSHHHH---HHHHHHHHHH-HHHHHHHHCTTTC--CCCHHHHTTBGGGGGG------G
T ss_pred cccc-hhhhhhhhhhccccccccccchh---hhchhhhhhc-cchhhhhhhhccc--cchhhhhhcChhhhhh------c
Confidence 0000 00000000000000000000000 0000000000 0000000111111 1113467777777766 7
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCCC
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVL 723 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~ 723 (1012)
+++| +|+++|..|..|++.++.+++.+|++ +.+..+.+-| .+|+...... ..+.....++|++++|+..
T Consensus 311 I~vP-~L~i~Gw~D~~v~~~~~~~~y~al~~--------~~~~~Lilgp-w~H~~~~~~~-~~d~~~~~~~wFD~~LkG~ 379 (405)
T d1lnsa3 311 VKAD-VLIVHGLQDWNVTPEQAYNFWKALPE--------GHAKHAFLHR-GAHIYMNSWQ-SIDFSETINAYFVAKLLDR 379 (405)
T ss_dssp CCSE-EEEEEETTCCSSCTHHHHHHHHHSCT--------TCCEEEEEES-CSSCCCTTBS-SCCHHHHHHHHHHHHHTTC
T ss_pred CCCC-EEEEEeccCCCCCHHHHHHHHHHHHh--------CCCcEEEEeC-CCCCCCcccc-cchHHHHHHHHHHHHhCCC
Confidence 8899 99999999999999999998888753 4566777766 6787643322 1233456678999999764
Q ss_pred C
Q psy1288 724 Q 724 (1012)
Q Consensus 724 ~ 724 (1012)
+
T Consensus 380 ~ 380 (405)
T d1lnsa3 380 D 380 (405)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=4.8e-16 Score=164.77 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=128.0
Q ss_pred CCCCCcEEEEeeCCCCCC-ChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc------hhhhhHHHHH
Q psy1288 643 GKQYPATLLMTADHDDRV-SPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ------FPLTIPVIYF 715 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v-~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~------~~~~~~~~~f 715 (1012)
++++|.|+++||+..... .......+...+.+. .+.+++.+..++.++++..+... ..+..+..++
T Consensus 29 ~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~-------~g~~V~~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (258)
T d2bgra2 29 SKKYPLLLDVYAGPCSQKADTVFRLNWATYLAST-------ENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEA 101 (258)
T ss_dssp TSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHT-------TCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHH
T ss_pred CCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhc-------CCcEEEeecccccCCcchHHHHhhhhhhhhHHHHHHHHH
Confidence 589999999999622211 111222233334444 67888988888766655332211 1234445556
Q ss_pred HHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhhhcccccC-CCCCCCCCCCcccCCCCCChhhh
Q psy1288 716 YLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLK-FNKFTIGYFWESDYGSPANSSQF 792 (1012)
Q Consensus 716 l~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~ 792 (1012)
++..... ...+..+++ |.|.| ++.++..+...++.+.+++.-... .........+....|.+......
T Consensus 102 ~~~~~~~--~~id~~~i~i~G~S~G-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (258)
T d2bgra2 102 ARQFSKM--GFVDNKRIAIWGWSYG-------GYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNL 172 (258)
T ss_dssp HHHHTTS--SSEEEEEEEEEEETHH-------HHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHHHHHHHCCCSTTTTH
T ss_pred HHHhhhh--cccccccccccCcchh-------hcccccccccCCCcceEEEEeecccccccccccccchhcccccchhhH
Confidence 6555444 334455555 88988 555555545556665543221111 11101111111223444333445
Q ss_pred hHhHcCCCCCCCCCCCCCCCCCC-CceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCc
Q psy1288 793 EYLLGYSPLHNIQGPNELKGKQY-PATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT 871 (1012)
Q Consensus 793 ~~~~~~Sp~~~v~~~~~~~~~~~-~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~ 871 (1012)
+.....||+.+++ ++. +|+||+||++|.+||+.++++++++|+++|+ +++|++||++|||+....
T Consensus 173 ~~~~~~~~~~~~~-------~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~-------~~~~~~~~g~~H~~~~~~ 238 (258)
T d2bgra2 173 DHYRNSTVMSRAE-------NFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGV-------DFQAMWYTDEDHGIASST 238 (258)
T ss_dssp HHHHHSCSGGGGG-------GGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTC-------CCEEEEETTCCTTCCSHH
T ss_pred HHhhccccccccc-------ccccCChheeeecCCCcccHHHHHHHHHHHHHCCC-------CEEEEEECCCCCCCCCCc
Confidence 6678899999998 655 7999999999999999999999999999999 999999999999998765
Q ss_pred hhhhhhh
Q psy1288 872 TKQLCVR 878 (1012)
Q Consensus 872 ~~~~~~~ 878 (1012)
++...+.
T Consensus 239 ~~~~~~~ 245 (258)
T d2bgra2 239 AHQHIYT 245 (258)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5443333
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=3.6e-15 Score=159.28 Aligned_cols=108 Identities=53% Similarity=0.840 Sum_probs=79.5
Q ss_pred hhhcccccCCCCCCCCCCCcccCCCCCChhhhhH------hHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcch
Q psy1288 761 IAEVLDMLKFNKFTIGYFWESDYGSPANSSQFEY------LLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHS 834 (1012)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~ 834 (1012)
.++++|+.++........+..+.+....++.... +...||+..++ ...+|+||+||++|++||+.||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-------~~~pP~LiihG~~D~~Vp~~~s 219 (280)
T d1qfma2 147 QVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD-------IQYPSMLLLTADHDDRVVPLHS 219 (280)
T ss_dssp ESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTT-------CCCCEEEEEEETTCCSSCTHHH
T ss_pred eccccchhhhccccccccceecccCCCcccccccccccccccccchhhhcc-------cCCCceEEeecccCCCCCHHHH
Confidence 3477777777655444433333333322222323 33446666666 6778999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCchhhh
Q psy1288 835 LKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQL 875 (1012)
Q Consensus 835 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~ 875 (1012)
++|+++||+.|+.++..|+|++|+++|++||||.++.++..
T Consensus 220 ~~l~~aL~~~g~~~~~~~~~~~l~~~~~~gHgf~~~~~~~~ 260 (280)
T d1qfma2 220 LKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVI 260 (280)
T ss_dssp HHHHHHHHHHTTTSTTCCSCEEEEEESSCCSSTTCCHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCCcEEEEEeCcCCCCCCCcHHHHH
Confidence 99999999999988888999999999999999988755543
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.55 E-value=2.5e-14 Score=158.48 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=105.5
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCC--CCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFA--VSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~--~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
.+.|.++.+||.+|.+.+++|++ .++.|+||+.||... ......+... .+.++++||+|+.+|.||.++.+..+
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~---~~~~P~il~~~pyg~~~~~~~~~~~~~-~~~~a~~GY~vv~~d~RG~g~S~G~~ 80 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTN-WLEFVRDGYAVVIQDTRGLFASEGEF 80 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC---SSCEEEEEEEESSCTTCCHHHHTTSCC-THHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred EeCeEEECCCCCEEEEEEEEcCC---CCCEEEEEEEcCCCCccccCcCcccHH-HHHHHHCCCEEEEEeeCCccccCCcc
Confidence 45689999999999999999986 578999999987321 1111122222 23455689999999999999876554
Q ss_pred HhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCcccc
Q psy1288 481 HDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISD 551 (1012)
Q Consensus 481 ~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d 551 (1012)
. .......|..++++|+.++++.+ .||+++|.|+||++++.++...|..++|++..++ ++|
T Consensus 81 ~------~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~---~~d 141 (347)
T d1ju3a2 81 V------PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMA---SAD 141 (347)
T ss_dssp C------TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESC---CSC
T ss_pred c------cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccc---cch
Confidence 2 23334568888999999999977 6999999999999999999888888999999988 555
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.55 E-value=1.1e-13 Score=140.99 Aligned_cols=207 Identities=13% Similarity=0.050 Sum_probs=137.1
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcC--CCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYG--GFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hG--g~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
.+.+.+..++| +|.+.+..|... ...+.+++|++|+ +.+.++...+.......|+++||.|+.+|+||.|.....+
T Consensus 8 ~~~l~i~gp~G-~l~~~~~~p~~~-~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~~ 85 (218)
T d2fuka1 8 SAALTLDGPVG-PLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSF 85 (218)
T ss_dssp CEEEEEEETTE-EEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSCC
T ss_pred ceEEEEeCCCc-cEEEEEEcCCCC-CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCcc
Confidence 45677888898 688888888653 2344567777774 2332322222223456677889999999999987653322
Q ss_pred HhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeec
Q psy1288 481 HDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHT 560 (1012)
Q Consensus 481 ~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~ 560 (1012)
.......+|+.++++|+.++. +..+++++|+|+||.+++.++.+.+ ..+.|+.++
T Consensus 86 ------~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~~--~~~lil~ap--------------- 140 (218)
T d2fuka1 86 ------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAALE--PQVLISIAP--------------- 140 (218)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHC--CSEEEEESC---------------
T ss_pred ------CcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhcccc--cceEEEeCC---------------
Confidence 223445789999999998863 4578999999999999987776532 456677666
Q ss_pred ccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCc
Q psy1288 561 MKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDE 640 (1012)
Q Consensus 561 ~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~ 640 (1012)
+. . .+. +...
T Consensus 141 ----------~~------------------------~---------------~~~----------------~~~~----- 150 (218)
T d2fuka1 141 ----------PA------------------------G---------------RWD----------------FSDV----- 150 (218)
T ss_dssp ----------CB------------------------T---------------TBC----------------CTTC-----
T ss_pred ----------cc------------------------c---------------chh----------------hhcc-----
Confidence 00 0 000 0000
Q ss_pred ccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhC
Q psy1288 641 LKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSG 720 (1012)
Q Consensus 641 ~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l 720 (1012)
...+| +|+|||..|..|++.++.++++++ ..+..+.+.++++|.|..... +....+.+|+.+++
T Consensus 151 --~~~~P-~Lvi~G~~D~~vp~~~~~~l~~~~----------~~~~~l~~i~ga~H~f~~~~~---~l~~~~~~~v~~~l 214 (218)
T d2fuka1 151 --QPPAQ-WLVIQGDADEIVDPQAVYDWLETL----------EQQPTLVRMPDTSHFFHRKLI---DLRGALQHGVRRWL 214 (218)
T ss_dssp --CCCSS-EEEEEETTCSSSCHHHHHHHHTTC----------SSCCEEEEETTCCTTCTTCHH---HHHHHHHHHHGGGC
T ss_pred --ccccc-eeeEecCCCcCcCHHHHHHHHHHc----------cCCceEEEeCCCCCCCCCCHH---HHHHHHHHHHHHhc
Confidence 23456 999999999999999887765432 345678889999999865322 22233447888887
Q ss_pred CC
Q psy1288 721 PV 722 (1012)
Q Consensus 721 ~~ 722 (1012)
..
T Consensus 215 ~~ 216 (218)
T d2fuka1 215 PA 216 (218)
T ss_dssp SS
T ss_pred CC
Confidence 54
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.53 E-value=5.5e-14 Score=152.80 Aligned_cols=250 Identities=16% Similarity=0.088 Sum_probs=146.4
Q ss_pred ceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc-ChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 402 ETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF-SVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 402 ~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
.++.+.+.. +|..|.+.+++|++. +++.|+||++|||......... ......+..+.|+.|+.+|+|...+.
T Consensus 45 ~~~~~~~~~-~g~~i~~~~y~P~~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~---- 117 (308)
T d1u4na_ 45 EVREFDMDL-PGRTLKVRMYRPEGV--EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH---- 117 (308)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS----
T ss_pred cEEEEEEec-CCceEEEEEEecccc--CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc----
Confidence 355666665 788999999999864 4678999999998543333222 22233344443567889999976543
Q ss_pred HhhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhCCCc----eeEEEEccCCCccccCc
Q psy1288 481 HDGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQRPDL----FGAAIVQVGNPEISDCG 553 (1012)
Q Consensus 481 ~~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p~~----f~a~v~~~~~~~i~d~~ 553 (1012)
......+|+..++.|+.++. .+|+++|+++|+|+||++++.++....+. ........+ ..++
T Consensus 118 -------~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 186 (308)
T d1u4na_ 118 -------KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYP---STGY- 186 (308)
T ss_dssp -------CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESC---CCCC-
T ss_pred -------ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccccccc---cccc-
Confidence 23345679999999999764 47999999999999999998876653321 223333333 1110
Q ss_pred ceeeeecccccccCcccccccCCCCcccc-cC-CCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCc
Q psy1288 554 RWLIVHTMKDCKNNMFHFCDLDTIPDRKI-EG-KLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSP 631 (1012)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~dl~~~~~~~~-~~-~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP 631 (1012)
+...-..... .. ...++.. .+.. .+ ..+....... .....++
T Consensus 187 -------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~-~~~~~~~~~~---~~~~~s~ 230 (308)
T d1u4na_ 187 -------------------DPAHPPASIEENAEGYLLTGG-----MSLW--------FL-DQYLNSLEEL---THPWFSP 230 (308)
T ss_dssp -------------------CTTSCCHHHHHTSSSSSSCHH-----HHHH--------HH-HHHCSSGGGG---GCTTTCG
T ss_pred -------------------ccccccchhhhccccccccch-----hhhh--------hh-hcccCccccc---cchhhhh
Confidence 0000000000 00 0000000 0000 00 0000000000 0001122
Q ss_pred ccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc---cchhh
Q psy1288 632 LHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT---KQFPL 708 (1012)
Q Consensus 632 ~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~---~~~~~ 708 (1012)
..... ....|++|++||+.|..+ .++..++++|+++ |+++++.++++++|||..-.. ...+.
T Consensus 231 ~~~~d------~~~~Pp~li~~g~~D~l~--~~~~~~~~~L~~~-------G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~ 295 (308)
T d1u4na_ 231 VLYPD------LSGLPPAYIATAQYDPLR--DVGKLYAEALNKA-------GVKVEIENFEDLIHGFAQFYSLSPGATKA 295 (308)
T ss_dssp GGCSC------CTTCCCEEEEEEEECTTH--HHHHHHHHHHHHT-------TCCEEEEEEEEEETTGGGGTTTSHHHHHH
T ss_pred hhchh------hcCCCCeeEEecCcCCch--HHHHHHHHHHHHC-------CCCEEEEEECCCCEeCcccCCCCHHHHHH
Confidence 22222 356778999999999654 6889999999998 999999999999999854221 22345
Q ss_pred hhHHHHHHHHhC
Q psy1288 709 TIPVIYFYLTSG 720 (1012)
Q Consensus 709 ~~~~~~fl~~~l 720 (1012)
+..+.+||.+.|
T Consensus 296 ~~~~~~fl~~~L 307 (308)
T d1u4na_ 296 LVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 566667887654
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.51 E-value=4.4e-14 Score=153.07 Aligned_cols=128 Identities=11% Similarity=0.026 Sum_probs=89.9
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCch-hHHhh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGE-RWHDG 483 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~-~~~~~ 483 (1012)
...++..||..|++|.+.|++.. ..+.++||++||..... ..|. .+...|.++||.|+.+|+||+++... .+.+
T Consensus 6 ~h~~~~~dg~~l~~w~~~p~~~~-~~~~~~Vvi~HG~~~~~--~~~~-~~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~~- 80 (302)
T d1thta_ 6 AHVLRVNNGQELHVWETPPKENV-PFKNNTILIASGFARRM--DHFA-GLAEYLSTNGFHVFRYDSLHHVGLSSGSIDE- 80 (302)
T ss_dssp EEEEEETTTEEEEEEEECCCTTS-CCCSCEEEEECTTCGGG--GGGH-HHHHHHHTTTCCEEEECCCBCC--------C-
T ss_pred eeEEEcCCCCEEEEEEecCcCCC-CCCCCEEEEeCCCcchH--HHHH-HHHHHHHHCCCEEEEecCCCCCCCCCCcccC-
Confidence 34467789999999999997643 45678999999965433 2343 35677888899999999999643321 1111
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
........|+.++++|+... ++++++++|+|+||.+++.++.. ..++++|+.+|
T Consensus 81 ---~~~~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g 134 (302)
T d1thta_ 81 ---FTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD--LELSFLITAVG 134 (302)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESC
T ss_pred ---CCHHHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc--cccceeEeecc
Confidence 01112356888888998776 35789999999999988877754 34678888887
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=7.1e-14 Score=145.41 Aligned_cols=211 Identities=13% Similarity=-0.026 Sum_probs=128.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc---chH-hHHHHHHHHHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ---NVF-DDFQCAAEYLIA 505 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~---~~~-~D~~a~~~~l~~ 505 (1012)
++.|+||++||..+... .|.. ....|+++||.|+++|.||.|+....+.......... ... .++.+....+..
T Consensus 22 ~~~~~vl~lHG~~~~~~--~~~~-~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (238)
T d1ufoa_ 22 APKALLLALHGLQGSKE--HILA-LLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEE 98 (238)
T ss_dssp SCCEEEEEECCTTCCHH--HHHH-TSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHH--HHHH-HHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhh
Confidence 45799999999765432 2221 2334556799999999999875432211100000000 011 122222233333
Q ss_pred cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCC
Q psy1288 506 SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGK 585 (1012)
Q Consensus 506 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~ 585 (1012)
...+++.+++++|+|+||++++.++.++|+...+ ++..+ . .....+
T Consensus 99 ~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~-~~~~~---~----------------------~~~~~~-------- 144 (238)
T d1ufoa_ 99 AERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGV-LAFIG---S----------------------GFPMKL-------- 144 (238)
T ss_dssp HHHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCE-EEESC---C----------------------SSCCCC--------
T ss_pred ccccCCceEEEEEecccHHHHHHHHhcCcchhhe-eeeee---e----------------------cccccc--------
Confidence 4556788999999999999999999888875544 44433 0 000000
Q ss_pred CCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHH
Q psy1288 586 LPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHS 665 (1012)
Q Consensus 586 ~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s 665 (1012)
.+...+..+. ...+...++..... ...+.| +|++||..|..|++.++
T Consensus 145 --------------------------~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~P-~li~~G~~D~~v~~~~~ 191 (238)
T d1ufoa_ 145 --------------------------PQGQVVEDPG-VLALYQAPPATRGE-----AYGGVP-LLHLHGSRDHIVPLARM 191 (238)
T ss_dssp --------------------------CTTCCCCCHH-HHHHHHSCGGGCGG-----GGTTCC-EEEEEETTCTTTTHHHH
T ss_pred --------------------------cccccccccc-ccchhhhhhhhhhh-----hhcCCC-eEEEEcCCCCccCHHHH
Confidence 1111112222 23344556665544 235667 99999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 666 LKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 666 ~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
.+++++|++.. ....+.+..++++||.... +.+....+|+.+++.
T Consensus 192 ~~~~~~l~~~~-----~~~~~~~~~~~g~gH~~~~------~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 192 EKTLEALRPHY-----PEGRLARFVEEGAGHTLTP------LMARVGLAFLEHWLE 236 (238)
T ss_dssp HHHHHHHGGGC-----TTCCEEEEEETTCCSSCCH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CCceEEEEEECCCCCccCH------HHHHHHHHHHHHHhc
Confidence 99999998871 1235788999999998643 234556678887753
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.51 E-value=1.8e-13 Score=153.46 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=111.8
Q ss_pred CCCceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCC----CCCCCCCc-----ChhHHHHHHhCCeEEEEEc
Q psy1288 399 SLFETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGF----AVSLQPGF-----SVTKIVFLRDFNGIYAIPN 469 (1012)
Q Consensus 399 ~~~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~----~~~~~~~~-----~~~~~~~l~~~G~~v~~~d 469 (1012)
..+..+.|.++.+||++|.+.+++|++ .++.|+||..+.-. .......+ ......+++++||+|+.+|
T Consensus 24 ~~~~~~~v~ipmrDG~~L~~~v~~P~~---~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 100 (385)
T d2b9va2 24 RDYIKREVMVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQD 100 (385)
T ss_dssp CSEEEEEEEEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred CCCeEeEEEEECCCCCEEEEEEEEcCC---CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEc
Confidence 446678899999999999999999987 57899999875321 11111111 1123456777899999999
Q ss_pred CCCCCCCchhHHhhh-----hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEcc
Q psy1288 470 IRGGGEYGERWHDGG-----RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQV 544 (1012)
Q Consensus 470 ~RG~g~~g~~~~~~~-----~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~ 544 (1012)
.||.++.+..|.... .........+|..++++|+.++...+..||+++|+|+||++++.++...|..+++++...
T Consensus 101 ~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~ 180 (385)
T d2b9va2 101 IRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPES 180 (385)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEE
T ss_pred CCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEec
Confidence 999998877765432 223445668999999999999987788999999999999999999988888999999887
Q ss_pred C
Q psy1288 545 G 545 (1012)
Q Consensus 545 ~ 545 (1012)
+
T Consensus 181 ~ 181 (385)
T d2b9va2 181 P 181 (385)
T ss_dssp E
T ss_pred c
Confidence 7
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=6.5e-16 Score=163.73 Aligned_cols=205 Identities=12% Similarity=0.083 Sum_probs=124.5
Q ss_pred CCCCCcEEEEeeCCCC-CCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccc------hhhhhHHHHH
Q psy1288 643 GKQYPATLLMTADHDD-RVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQ------FPLTIPVIYF 715 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~-~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~------~~~~~~~~~f 715 (1012)
++++|.|+++||+... .+.-.....+..++.+. .+.+++.++.+++++++...... ..+..+++++
T Consensus 28 ~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~-------~G~~vv~~d~rGs~~~g~~~~~~~~~~~g~~~~~d~~~~ 100 (258)
T d1xfda2 28 TTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSS-------HGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEA 100 (258)
T ss_dssp SSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHT-------TCCEEECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHH
T ss_pred CCceeEEEEEcCCccccCcCCCcCcchHHHHHhc-------CCcEEEEeccccccccchhHhhhhhccchhHHHHHHHHh
Confidence 5789999999997211 11111112222334444 67899999888888765422111 1334455555
Q ss_pred HHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccch----hh-hcccccCCCCCCCCCCCcccCCCCCC
Q psy1288 716 YLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDIL----IA-EVLDMLKFNKFTIGYFWESDYGSPAN 788 (1012)
Q Consensus 716 l~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~g~~~~ 788 (1012)
++..... ...|..+++ |.|.| ++.++..++..++.. .+ +..+..+.............+|.+..
T Consensus 101 i~~l~~~--~~id~~ri~v~G~S~G-------G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (258)
T d1xfda2 101 VRTMLKE--QYIDRTRVAVFGKDYG-------GYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGL 171 (258)
T ss_dssp HHHHHSS--SSEEEEEEEEEEETHH-------HHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHHHCCCSS
T ss_pred hhhhccc--ccccccceeccccCch-------HHHHHHHHhcCCcccceeeeeeeccccceeeecccccccccccccccc
Confidence 5555443 344566666 88999 666655554444432 22 11111111111111111112344321
Q ss_pred hhhhhHhHcCCCCCCCCCCCCCCCC-CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 789 SSQFEYLLGYSPLHNIQGPNELKGK-QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 789 ~~~~~~~~~~Sp~~~v~~~~~~~~~-~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+.+.+...||+.+++ + .++|+||+||++|.+||+.++++++++|++.|+ +++++++|++||++
T Consensus 172 --~~~~~~~~s~~~~~~-------~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~-------~~~~~~~p~~~H~~ 235 (258)
T d1xfda2 172 --DNRAYEMTKVAHRVS-------ALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKA-------NYSLQIYPDESHYF 235 (258)
T ss_dssp --CCSSTTTTCTHHHHT-------SCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTC-------CCEEEEETTCCSSC
T ss_pred --chHHhhccchhhhhh-------hhhcccccccccCCCCCcCHHHHHHHHHHHHHCCC-------CEEEEEECCCCCCC
Confidence 123346778888888 4 468999999999999999999999999999988 99999999999999
Q ss_pred CCCchhhhhhhh
Q psy1288 868 GKPTTKQLCVRY 879 (1012)
Q Consensus 868 ~~~~~~~~~~~~ 879 (1012)
....++...+..
T Consensus 236 ~~~~~~~~~~~~ 247 (258)
T d1xfda2 236 TSSSLKQHLYRS 247 (258)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 876555444443
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.49 E-value=5.4e-16 Score=164.60 Aligned_cols=200 Identities=14% Similarity=0.081 Sum_probs=123.3
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccc---------cchhhhhHHHH
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT---------KQFPLTIPVIY 714 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~---------~~~~~~~~~~~ 714 (1012)
.+.|.|+++||+.=..... ....+.+..+. .+++++.++.++..+.+.... ..+++....+.
T Consensus 37 ~~~Pviv~~HGG~~~~~~~--~~~~~~~~la~-------~G~~v~~~d~r~~~~~g~~~~~~~~~~~~~~~~~D~~~~~~ 107 (260)
T d2hu7a2 37 TPGPTVVLVHGGPFAEDSD--SWDTFAASLAA-------AGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAAR 107 (260)
T ss_dssp SSEEEEEEECSSSSCCCCS--SCCHHHHHHHH-------HTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccCCCc--cccHHHHHHHh-------hccccccceeeeccccccccccccccccchhhhhhhccccc
Confidence 4678899999852111111 11122233333 467888887765555443211 11345566666
Q ss_pred HHHHhCCCCCCCCCCCCCccCCccccccCccceeeeccccccccchh-----hhcccccCCCCCCCCCCCcccCCCCCCh
Q psy1288 715 FYLTSGPVLQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILI-----AEVLDMLKFNKFTIGYFWESDYGSPANS 789 (1012)
Q Consensus 715 fl~~~l~~~~~~~d~~~~~GgS~g~~~~~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 789 (1012)
|+.+.. ..+...+.|+|.| ++.++..++..++.+. +|+.++..+...... ++..+......
T Consensus 108 ~l~~~~-----~~~~~~i~g~s~g-------g~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 173 (260)
T d2hu7a2 108 WARESG-----LASELYIMGYSYG-------GYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA--AFRNFIEQLTG 173 (260)
T ss_dssp HHHHTT-----CEEEEEEEEETHH-------HHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCH--HHHHHHHHHHC
T ss_pred cccccc-----ccceeeccccccc-------cccccchhccCCcccccccccccchhhhhhhccccc--ccccccccccc
Confidence 776642 2223344477776 3334343344444443 366666554432221 11111100001
Q ss_pred hhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 790 SQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 790 ~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
...+.+...||+.+++ ++++|+||+||++|..||+.++++|+++|+.+|+ ++++++||++||++..
T Consensus 174 ~~~~~~~~~~~~~~~~-------~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~-------~~~~~~~~g~~H~~~~ 239 (260)
T d2hu7a2 174 GSREIMRSRSPINHVD-------RIKEPLALIHPQNDSRTPLKPLLRLMGELLARGK-------TFEAHIIPDAGHAINT 239 (260)
T ss_dssp SCHHHHHHTCGGGCGG-------GCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTC-------CEEEEEETTCCSSCCB
T ss_pred cccccccccchhhccc-------ccCCCceeeecccCceecHHHHHHHHHHHHHCCC-------CeEEEEECcCCCCCCC
Confidence 2245678899999999 9999999999999999999999999999999988 9999999999999987
Q ss_pred Cchhhhhhhhh
Q psy1288 870 PTTKQLCVRYM 880 (1012)
Q Consensus 870 ~~~~~~~~~~~ 880 (1012)
+.++...+..+
T Consensus 240 ~e~~~~~~~~~ 250 (260)
T d2hu7a2 240 MEDAVKILLPA 250 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhHHHHHHHH
Confidence 76665544443
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.48 E-value=4.1e-13 Score=136.03 Aligned_cols=186 Identities=11% Similarity=0.039 Sum_probs=126.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh-hhcC-C---CcchHhHHHHHHHHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG-GRLL-N---KQNVFDDFQCAAEYL 503 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~-~~~~-~---~~~~~~D~~a~~~~l 503 (1012)
+.++|+||++||..+.. ..|. .+...+.+ ++.|+.++.......+..|... .... . .....+++...+.++
T Consensus 11 ~~~~P~vi~lHG~g~~~--~~~~-~~~~~l~~-~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 86 (202)
T d2h1ia1 11 DTSKPVLLLLHGTGGNE--LDLL-PLAEIVDS-EASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEA 86 (202)
T ss_dssp CTTSCEEEEECCTTCCT--TTTH-HHHHHHHT-TSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCH--HHHH-HHHHHhcc-CCceeeecccccCCCCccccccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 46689999999964332 2333 23456664 8888887643222111111110 0000 0 011234566667777
Q ss_pred HHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCccccc
Q psy1288 504 IASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIE 583 (1012)
Q Consensus 504 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~ 583 (1012)
.+...+++.+++++|.|+||.+++.++.++|+.+.+++...| . .
T Consensus 87 ~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~---~----------------------~----------- 130 (202)
T d2h1ia1 87 AKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHP---M----------------------V----------- 130 (202)
T ss_dssp HHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESC---C----------------------C-----------
T ss_pred HHhccccccceeeecccccchHHHHHHHhccccccceeeecC---C----------------------C-----------
Confidence 777788999999999999999999999999999999998887 0 0
Q ss_pred CCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChH
Q psy1288 584 GKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPV 663 (1012)
Q Consensus 584 ~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~ 663 (1012)
|. + +..... ....| ++++||.+|++||+.
T Consensus 131 ---~~------------------------~-----------------~~~~~~------~~~~~-~~i~~G~~D~~vp~~ 159 (202)
T d2h1ia1 131 ---PR------------------------R-----------------GMQLAN------LAGKS-VFIAAGTNDPICSSA 159 (202)
T ss_dssp ---SC------------------------S-----------------SCCCCC------CTTCE-EEEEEESSCSSSCHH
T ss_pred ---Cc------------------------c-----------------cccccc------cccch-hhcccccCCCccCHH
Confidence 00 0 000001 23344 999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 664 HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 664 ~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
++.++..+|+.+ +.+++++.+|+ ||++.. +.+.++.+||++.
T Consensus 160 ~~~~~~~~l~~~-------g~~~~~~~~~g-gH~~~~------~~~~~~~~wl~k~ 201 (202)
T d2h1ia1 160 ESEELKVLLENA-------NANVTMHWENR-GHQLTM------GEVEKAKEWYDKA 201 (202)
T ss_dssp HHHHHHHHHHTT-------TCEEEEEEESS-TTSCCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-------CCCEEEEEECC-CCcCCH------HHHHHHHHHHHHh
Confidence 999999999998 88999999985 798642 4567788999875
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=3.1e-13 Score=145.26 Aligned_cols=259 Identities=12% Similarity=0.024 Sum_probs=157.9
Q ss_pred CCceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC--hhHHHHHHhCCeEEEEEcCCCCCCC
Q psy1288 400 LFETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS--VTKIVFLRDFNGIYAIPNIRGGGEY 476 (1012)
Q Consensus 400 ~~~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~d~RG~g~~ 476 (1012)
.+.++.+.+.|+ .|..+++.+..| .++.|+|+++||+.+......|. ....+++++.|+++++++..+.+.+
T Consensus 6 ~~~v~~~~~~s~~~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 80 (288)
T d1sfra_ 6 GLPVEYLQVPSPSMGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFY 80 (288)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTT
T ss_pred CCEEEEEEEECCCCCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCCC
Confidence 344566777765 688888877765 36899999999965443333332 1245778888999999998776544
Q ss_pred chhHHhhh-hcCCCcchHhHH--HHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCc
Q psy1288 477 GERWHDGG-RLLNKQNVFDDF--QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCG 553 (1012)
Q Consensus 477 g~~~~~~~-~~~~~~~~~~D~--~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~ 553 (1012)
+..+.... ........++++ ...+.++.++-.+++++++|+|+|+||++++.++.++|++|+++++.+| ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg---~~~-- 155 (288)
T d1sfra_ 81 SDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSG---LLD-- 155 (288)
T ss_dssp CBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC---CSC--
T ss_pred ccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecC---ccc--
Confidence 33222111 000111112222 3445677777778999999999999999999999999999999999988 211
Q ss_pred ceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCccc
Q psy1288 554 RWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLH 633 (1012)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~ 633 (1012)
....... . .... ......+......+|.+.. ..+...+|..
T Consensus 156 --------------------~~~~~~~----------~---~~~~--~~~~~~~~~~~~~~g~~~~----~~~~~~~p~~ 196 (288)
T d1sfra_ 156 --------------------PSQAMGP----------T---LIGL--AMGDAGGYKASDMWGPKED----PAWQRNDPLL 196 (288)
T ss_dssp --------------------TTSTTHH----------H---HHHH--HHHHTTSCCHHHHHCSTTS----THHHHSCTTT
T ss_pred --------------------ccccccc----------h---hhhh--hhhhcccccHhhhcCCcch----hhhHhcCHHH
Confidence 1100000 0 0000 0000000000011233322 2356677776
Q ss_pred CCCCCCcccCCCCCcEEEEeeCCCCCCCh--------------HHHHHHHHHHHhhhccCCCCCCcEEEEEeCC-CCCCC
Q psy1288 634 NIQGPDELKGKQYPATLLMTADHDDRVSP--------------VHSLKFAATLQEKLRDYPHQTNPLLIRIETK-AGHGG 698 (1012)
Q Consensus 634 ~~~~p~~~~~~~~P~vLiihG~~D~~v~~--------------~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~-~gHg~ 698 (1012)
++... ..+.+.+++.+|..|..++. .++.++..+|.++ +.+..+..++. |+|.+
T Consensus 197 ~~~~~----~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~~l~~~l~~~-------g~~~~~~~~~~~G~H~w 265 (288)
T d1sfra_ 197 NVGKL----IANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAG-------GGHNGVFDFPDSGTHSW 265 (288)
T ss_dssp THHHH----HHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCSEEEECCSCCCSSH
T ss_pred HHHHh----hhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHC-------CCCeEEEEECCCCccCh
Confidence 65411 11233499999998877663 4567788888888 88888888886 46976
Q ss_pred CCccccchhhhhHHHHHHHHhCCC
Q psy1288 699 GKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 699 ~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
.-. ...+.+.+.||.+.|+.
T Consensus 266 ~~w----~~~l~~~l~~l~~alg~ 285 (288)
T d1sfra_ 266 EYW----GAQLNAMKPDLQRALGA 285 (288)
T ss_dssp HHH----HHHHHHTHHHHHHHHTC
T ss_pred hHH----HHHHHHHHHHHHHhcCC
Confidence 421 24556677888888765
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=7e-13 Score=140.46 Aligned_cols=209 Identities=12% Similarity=0.024 Sum_probs=137.3
Q ss_pred ceEEEEEECCCCc-eEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH
Q psy1288 402 ETKQVFYPSKDGT-KIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW 480 (1012)
Q Consensus 402 ~~~~v~~~s~DG~-~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~ 480 (1012)
..+.+.+.++||. ++.++++.|.+.++.+++|+|+++||+....... .....++...+|++|+++++++...++...
T Consensus 12 ~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~--~~~~~~~~~~~~~~vV~v~~~~~~~~~~~~ 89 (265)
T d2gzsa1 12 HFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLD--DELLKQLSEKTPPVIVAVGYQTNLPFDLNS 89 (265)
T ss_dssp EEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCC--HHHHHHHTTSCCCEEEEEEESSSSSCCHHH
T ss_pred eeEEEEEEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHH--HHHHHHHHhcCCCeEEEecCCCCCcCcccc
Confidence 4677889999985 7999999999998889999999999974222111 111234455668999999999887765432
Q ss_pred Hhhh--------hcC----------CCcchHhHHH--HHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEE
Q psy1288 481 HDGG--------RLL----------NKQNVFDDFQ--CAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAA 540 (1012)
Q Consensus 481 ~~~~--------~~~----------~~~~~~~D~~--a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~ 540 (1012)
.... ... .+...+.++. ..+.++.++..+|+++++|.|+|+||++++.++.+ ++.|.++
T Consensus 90 r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~~ 168 (265)
T d2gzsa1 90 RAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSY 168 (265)
T ss_dssp HHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEE
T ss_pred cccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCEE
Confidence 2110 000 0011122221 12344445556799999999999999999988776 5678888
Q ss_pred EEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCCh
Q psy1288 541 IVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANS 620 (1012)
Q Consensus 541 v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~ 620 (1012)
++.+| .. | |+ +.
T Consensus 169 ~a~s~---~~-----------------------------------------------------------~---~~---~~ 180 (265)
T d2gzsa1 169 YSASP---SL-----------------------------------------------------------G---RG---YD 180 (265)
T ss_dssp EEESG---GG-----------------------------------------------------------S---TT---HH
T ss_pred EEECC---cc-----------------------------------------------------------c---cc---ch
Confidence 87777 10 0 00 01
Q ss_pred HHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCC--------CCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeC
Q psy1288 621 SQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADH--------DDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIET 692 (1012)
Q Consensus 621 ~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~--------D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p 692 (1012)
.. +...++..... ..+.| +++.||.. |..+++.++.+++++|+++ +.++.+.++|
T Consensus 181 ~~---~~~~~~~~~~~------~~~~~-~~~~~g~~~~~~~~~~d~~~~~~~~~~l~~~L~~~-------g~~~~~~~~p 243 (265)
T d2gzsa1 181 AL---LSRVTAVEPLQ------FCTKH-LAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDK-------GVNAVFWDFP 243 (265)
T ss_dssp HH---HHHHHTSCTTT------TTTCE-EEEEECCC-----------CHHHHHHHHHHHHHHT-------TCCEEEEECT
T ss_pred hh---hhccccccccc------cCCCc-EEEEcCCcccccccccccchhHHHHHHHHHHHHHC-------CCCEEEEEcC
Confidence 11 11222332222 23444 88888876 6778888999999999998 9999999999
Q ss_pred CCCCCC
Q psy1288 693 KAGHGG 698 (1012)
Q Consensus 693 ~~gHg~ 698 (1012)
+++||.
T Consensus 244 G~~Hg~ 249 (265)
T d2gzsa1 244 NLGHGP 249 (265)
T ss_dssp TCCHHH
T ss_pred CCCcch
Confidence 999974
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.38 E-value=1.4e-11 Score=126.17 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=143.1
Q ss_pred EEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCC--CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHh
Q psy1288 405 QVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGF--AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHD 482 (1012)
Q Consensus 405 ~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~--~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~ 482 (1012)
+|++.+++| +|.+++..+. ....|++|++||.+ +..+...........+.++|+.++.+|+||.+.....
T Consensus 2 ev~i~g~~G-~Le~~~~~~~----~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~--- 73 (218)
T d2i3da1 2 EVIFNGPAG-RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE--- 73 (218)
T ss_dssp EEEEEETTE-EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC---
T ss_pred cEEEeCCCc-cEEEEEeCCC----CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCccc---
Confidence 367888999 7998765333 34568999999843 2232222222345567778999999999998865333
Q ss_pred hhhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeeccc
Q psy1288 483 GGRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMK 562 (1012)
Q Consensus 483 ~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~ 562 (1012)
........+|..++++|+..+.... ..+.+.|+|+||.+++.++.+.+.. .+.+...+ .
T Consensus 74 ---~~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~~~~-~~~~~~~~---~------------- 132 (218)
T d2i3da1 74 ---FDHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRRPEI-EGFMSIAP---Q------------- 132 (218)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHCTTE-EEEEEESC---C-------------
T ss_pred ---cccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhhccc-cceeeccc---c-------------
Confidence 2334456789999999998876543 4678899999999999988876543 44555544 0
Q ss_pred ccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCccc
Q psy1288 563 DCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELK 642 (1012)
Q Consensus 563 ~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~ 642 (1012)
. ..+ +...+.
T Consensus 133 ---------~---------------------------------------~~~----------------~~~~~~------ 142 (218)
T d2i3da1 133 ---------P---------------------------------------NTY----------------DFSFLA------ 142 (218)
T ss_dssp ---------T---------------------------------------TTS----------------CCTTCT------
T ss_pred ---------c---------------------------------------ccc----------------chhhcc------
Confidence 0 000 000111
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
....| +|++||..|..++.....++.++++.. .+..+.+.+.++++|.|... ..+....+.+||+++|.-
T Consensus 143 ~~~~p-~l~i~g~~D~~~~~~~~~~l~~~~~~~------~~~~~~~~vi~gAdHfF~g~---~~~l~~~v~~~l~~~l~~ 212 (218)
T d2i3da1 143 PCPSS-GLIINGDADKVAPEKDVNGLVEKLKTQ------KGILITHRTLPGANHFFNGK---VDELMGECEDYLDRRLNG 212 (218)
T ss_dssp TCCSC-EEEEEETTCSSSCHHHHHHHHHHHTTS------TTCCEEEEEETTCCTTCTTC---HHHHHHHHHHHHHHHHTT
T ss_pred ccCCC-ceeeecccceecChHHHHHHHHHHhhc------cCCCccEEEeCCCCCCCcCC---HHHHHHHHHHHHHHhcCC
Confidence 23456 999999999999999999998888764 15568889999999998642 223345566899988754
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.38 E-value=4e-13 Score=142.00 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=67.3
Q ss_pred CCCCcEEEEEcCCCCCCCCC---CcCh---hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQP---GFSV---TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEY 502 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~---~~~~---~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~ 502 (1012)
..++|+||++|||....... .|.. .+...+.++|+.|+.+|+|+..+. .....++|+.++++|
T Consensus 28 ~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~-----------~~~~~~~d~~~~~~~ 96 (263)
T d1vkha_ 28 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNITR 96 (263)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch-----------hhhHHHHhhhhhhhc
Confidence 46779999999985332221 2211 123445567999999999987653 123457899999999
Q ss_pred HHHcCCCCCCcEEEEecChHHHHHHHHHhhCC
Q psy1288 503 LIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534 (1012)
Q Consensus 503 l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 534 (1012)
+.+.. ++.+|+++|+|+||.+++.++...+
T Consensus 97 l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~ 126 (263)
T d1vkha_ 97 LVKEK--GLTNINMVGHSVGATFIWQILAALK 126 (263)
T ss_dssp HHHHH--TCCCEEEEEETHHHHHHHHHHTGGG
T ss_pred ccccc--cccceeeeccCcHHHHHHHHHHhcc
Confidence 98874 6789999999999999998876544
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.36 E-value=5.5e-12 Score=132.62 Aligned_cols=203 Identities=13% Similarity=-0.005 Sum_probs=125.9
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc-C---hhHHHHHHhCC----eEEEEEcCCC
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF-S---VTKIVFLRDFN----GIYAIPNIRG 472 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~-~---~~~~~~l~~~G----~~v~~~d~RG 472 (1012)
..+.+.+.|+ +|+++.++++.|+++++++++|+|+++||+.+....... . ..........+ +.+.......
T Consensus 21 ~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (255)
T d1jjfa_ 21 QVVNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNA 100 (255)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCC
T ss_pred EEEEEEEEecCCCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccccc
Confidence 5677777775 799999999999999888999999999997654332211 1 11112222222 3333333322
Q ss_pred CCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc--CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccc
Q psy1288 473 GGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS--GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEIS 550 (1012)
Q Consensus 473 ~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~ 550 (1012)
.......+... . ....+...+.++.++ ..++++++++.|+|+||++++.++.++|++|+++++.++ ..
T Consensus 101 ~~~~~~~~~~~----~---~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg---~~ 170 (255)
T d1jjfa_ 101 AGPGIADGYEN----F---TKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISA---AP 170 (255)
T ss_dssp CCTTCSCHHHH----H---HHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESC---CT
T ss_pred ccccccccccc----h---HHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEcc---Cc
Confidence 21111111000 0 001122223344433 347889999999999999999999999999999999888 00
Q ss_pred cCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCC
Q psy1288 551 DCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYS 630 (1012)
Q Consensus 551 d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~s 630 (1012)
+ .. . +. ..+..
T Consensus 171 ~----------------------~~-------------------~-~~-------------~~~~~-------------- 181 (255)
T d1jjfa_ 171 N----------------------TY-------------------P-NE-------------RLFPD-------------- 181 (255)
T ss_dssp T----------------------SC-------------------C-HH-------------HHCTT--------------
T ss_pred C----------------------Cc-------------------c-cc-------------ccccc--------------
Confidence 0 00 0 00 00000
Q ss_pred cccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCC
Q psy1288 631 PLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 699 (1012)
Q Consensus 631 P~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~ 699 (1012)
+.... ....|++++.||..|..++ ...++.++|+.+ +.++.+..++++||.+.
T Consensus 182 ~~~~~-------~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~-------g~~~~~~~~~~ggH~~~ 234 (255)
T d1jjfa_ 182 GGKAA-------REKLKLLFIACGTNDSLIG--FGQRVHEYCVAN-------NINHVYWLIQGGGHDFN 234 (255)
T ss_dssp TTHHH-------HHHCSEEEEEEETTCTTHH--HHHHHHHHHHHT-------TCCCEEEEETTCCSSHH
T ss_pred HHHHh-------hccCCcceEEeCCCCCCch--HHHHHHHHHHHC-------CCCEEEEEECCCCcCHH
Confidence 00000 1233459999999998765 466888999988 99999999999999863
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.35 E-value=3.1e-12 Score=130.22 Aligned_cols=183 Identities=15% Similarity=0.114 Sum_probs=119.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh-hhcCCC----cchHhHHHHHHHHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG-GRLLNK----QNVFDDFQCAAEYL 503 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~-~~~~~~----~~~~~D~~a~~~~l 503 (1012)
..++|+||++||..+.. ..|. .....+.. ++.++.++.......+..|... ...... .....++...++.+
T Consensus 20 ~~~~p~vv~lHG~g~~~--~~~~-~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 95 (209)
T d3b5ea1 20 KESRECLFLLHGSGVDE--TTLV-PLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEA 95 (209)
T ss_dssp SSCCCEEEEECCTTBCT--TTTH-HHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCH--HHHH-HHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHH
Confidence 35679999999975433 2343 23445654 7777777654322212222111 000000 11134455556677
Q ss_pred HHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCccccc
Q psy1288 504 IASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIE 583 (1012)
Q Consensus 504 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~ 583 (1012)
.++..++++||+++|+|+||.+++.++.++|++|.++++.+| ..
T Consensus 96 ~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g-------------------------~~----------- 139 (209)
T d3b5ea1 96 AKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRP-------------------------MP----------- 139 (209)
T ss_dssp HHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESC-------------------------CC-----------
T ss_pred HHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCC-------------------------cc-----------
Confidence 776678999999999999999999999999999999999888 00
Q ss_pred CCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChH
Q psy1288 584 GKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPV 663 (1012)
Q Consensus 584 ~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~ 663 (1012)
+. .+ .+... ..+.| ++++||..|+.++ .
T Consensus 140 ---~~---------------------------~~------------~~~~~--------~~~~p-~~~~~G~~D~~~~-~ 167 (209)
T d3b5ea1 140 ---VL---------------------------DH------------VPATD--------LAGIR-TLIIAGAADETYG-P 167 (209)
T ss_dssp ---CC---------------------------SS------------CCCCC--------CTTCE-EEEEEETTCTTTG-G
T ss_pred ---cc---------------------------cc------------ccccc--------cccch-heeeeccCCCccC-H
Confidence 00 00 00011 23556 9999999999987 5
Q ss_pred HHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHH
Q psy1288 664 HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYL 717 (1012)
Q Consensus 664 ~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~ 717 (1012)
.+.++..+|++. +..++++.+++ ||++.. ++..++.+||.
T Consensus 168 ~~~~~~~~l~~~-------G~~v~~~~~~g-gH~i~~------~~~~~~~~wl~ 207 (209)
T d3b5ea1 168 FVPALVTLLSRH-------GAEVDARIIPS-GHDIGD------PDAAIVRQWLA 207 (209)
T ss_dssp GHHHHHHHHHHT-------TCEEEEEEESC-CSCCCH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-------CCCeEEEEECC-CCCCCH------HHHHHHHHHhC
Confidence 677888899988 88999999986 698853 34455667774
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.6e-12 Score=130.93 Aligned_cols=196 Identities=16% Similarity=0.162 Sum_probs=121.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCC------CCCCchhHHhhhhcC-CCcch---HhHHHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRG------GGEYGERWHDGGRLL-NKQNV---FDDFQCA 499 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG------~g~~g~~~~~~~~~~-~~~~~---~~D~~a~ 499 (1012)
+..++||++||...... .|.. ....+...++.+++++-.. .+..+..|....... ..... +.+....
T Consensus 19 ~~~~~VI~lHG~G~~~~--~~~~-~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~ 95 (229)
T d1fj2a_ 19 KATAAVIFLHGLGDTGH--GWAE-AFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAEN 95 (229)
T ss_dssp CCSEEEEEECCSSSCHH--HHHH-HHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHH--HHHH-HHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHH
Confidence 34578999999543221 2211 1222334578888876421 111223343221111 11111 2222222
Q ss_pred HHHHHH---cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCC
Q psy1288 500 AEYLIA---SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDT 576 (1012)
Q Consensus 500 ~~~l~~---~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~ 576 (1012)
+..+++ ...++++||+++|+|+||.+++.++.++|+.|+++++.++ |
T Consensus 96 l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg---------~--------------------- 145 (229)
T d1fj2a_ 96 IKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSC---------W--------------------- 145 (229)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESC---------C---------------------
T ss_pred HHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCccccccc---------c---------------------
Confidence 222222 1347899999999999999999999999999999999888 0
Q ss_pred CCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCC
Q psy1288 577 IPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADH 656 (1012)
Q Consensus 577 ~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~ 656 (1012)
+|... .+.. .+.... ..+.| +|++||..
T Consensus 146 ---------lp~~~----------------------~~~~-------------~~~~~~-------~~~~P-vli~hG~~ 173 (229)
T d1fj2a_ 146 ---------LPLRA----------------------SFPQ-------------GPIGGA-------NRDIS-ILQCHGDC 173 (229)
T ss_dssp ---------CTTGG----------------------GSCS-------------SCCCST-------TTTCC-EEEEEETT
T ss_pred ---------ccccc----------------------cccc-------------cccccc-------cccCc-eeEEEcCC
Confidence 01000 0000 011111 24556 99999999
Q ss_pred CCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 657 DDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 657 D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
|+.||+.++.+.+..|++.. .+..+.++.+++.||.... +++.++.+||.++|.
T Consensus 174 D~~vp~~~~~~~~~~L~~~~-----~~~~v~~~~~~g~gH~i~~------~~~~~~~~wL~~~Lp 227 (229)
T d1fj2a_ 174 DPLVPLMFGSLTVEKLKTLV-----NPANVTFKTYEGMMHSSCQ------QEMMDVKQFIDKLLP 227 (229)
T ss_dssp CSSSCHHHHHHHHHHHHHHS-----CGGGEEEEEETTCCSSCCH------HHHHHHHHHHHHHSC
T ss_pred CCeeCHHHHHHHHHHHHhcC-----CCCceEEEEeCCCCCccCH------HHHHHHHHHHHhHCc
Confidence 99999999999999998851 1567999999999997642 456778899999874
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.33 E-value=5.2e-13 Score=139.90 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=132.0
Q ss_pred ceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCC----eEEEEEcCCCCCCC
Q psy1288 402 ETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFN----GIYAIPNIRGGGEY 476 (1012)
Q Consensus 402 ~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~d~RG~g~~ 476 (1012)
.++++.+.|+ .|.++.++++.|.+.. .+++|+|+++||+....... .. ..+..+.++| ++++.++...
T Consensus 14 ~~~~~~~~S~~lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~~-~~-~~l~~l~~~~~~~~~i~v~~~~~~---- 86 (246)
T d3c8da2 14 PAKEIIWKSERLKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSMP-VW-PVLTSLTHRQQLPPAVYVLIDAID---- 86 (246)
T ss_dssp CCEEEEEEETTTTEEEEEEEEEC------CCCCEEEESSHHHHHHTSC-CH-HHHHHHHHTTSSCSCEEEEECCCS----
T ss_pred CcEEEEEECCCCCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccCc-HH-HHHHHHHHhCCCCceEEeeccccc----
Confidence 4577778775 5889999999999875 46799999999975332222 22 2233333345 3344443221
Q ss_pred chhHHhhhhcCCCcchHhHHH-HHH-HHHHHc--CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccC
Q psy1288 477 GERWHDGGRLLNKQNVFDDFQ-CAA-EYLIAS--GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDC 552 (1012)
Q Consensus 477 g~~~~~~~~~~~~~~~~~D~~-a~~-~~l~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~ 552 (1012)
+..... .. .....+.+++ ..+ .++... ..+|+++++|+|+|+||++++.++.++|++|.++++.+| ..++
T Consensus 87 ~~~~~~--~~-~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg---~~~~ 160 (246)
T d3c8da2 87 TTHRAH--EL-PCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSG---SYWW 160 (246)
T ss_dssp HHHHHH--HS-SSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESC---CTTT
T ss_pred cccccc--cc-CccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCc---cccc
Confidence 111111 11 1111122221 222 222222 346889999999999999999999999999999999999 1110
Q ss_pred cceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcc
Q psy1288 553 GRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPL 632 (1012)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~ 632 (1012)
...+...... +....+.
T Consensus 161 -----------------------------------------------------------~~~~~~~~~~----~~~~~~~ 177 (246)
T d3c8da2 161 -----------------------------------------------------------PHRGGQQEGV----LLEKLKA 177 (246)
T ss_dssp -----------------------------------------------------------TCTTSSSCCH----HHHHHHT
T ss_pred -----------------------------------------------------------ccCCccchHH----HHHHhhh
Confidence 0001111111 1111222
Q ss_pred cCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHH
Q psy1288 633 HNIQGPDELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPV 712 (1012)
Q Consensus 633 ~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~ 712 (1012)
.... ....| +++.||..|..+ ...+.++.++|+++ +.++.+.++++ ||.+... .+.+.+.
T Consensus 178 ~~~~------~~~~~-~~l~~G~~D~~~-~~~~~~l~~~L~~~-------g~~~~~~~~~G-gH~~~~W----~~~l~~~ 237 (246)
T d3c8da2 178 GEVS------AEGLR-IVLEAGIREPMI-MRANQALYAQLHPI-------KESIFWRQVDG-GHDALCW----RGGLMQG 237 (246)
T ss_dssp TSSC------CCSCE-EEEEEESSCHHH-HHHHHHHHHHTGGG-------TTSEEEEEESC-CSCHHHH----HHHHHHH
T ss_pred hhhh------ccCCC-eEEEecCCCcch-hHHHHHHHHHHHHC-------CCCEEEEEeCC-CCChHHH----HHHHHHH
Confidence 3332 23445 999999999866 46788899999998 99999999986 7976432 3556677
Q ss_pred HHHHHHh
Q psy1288 713 IYFYLTS 719 (1012)
Q Consensus 713 ~~fl~~~ 719 (1012)
+.||-+.
T Consensus 238 l~~l~~~ 244 (246)
T d3c8da2 238 LIDLWQP 244 (246)
T ss_dssp HHHHHGG
T ss_pred HHHHHHh
Confidence 7777654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.4e-10 Score=122.00 Aligned_cols=215 Identities=16% Similarity=0.166 Sum_probs=145.7
Q ss_pred CCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEE
Q psy1288 109 SSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFK 188 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~ 188 (1012)
+.++|||++++|++... ....+|.++..++..++++... .....+.|||||++|++.....|.. .+...
T Consensus 44 P~wSPDGk~IAf~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~spdg~~i~~~~~~~~~~--~~~~~ 112 (269)
T d2hqsa1 44 PAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFP-------RHNGAPAFSPDGSKLAFALSKTGSL--NLYVM 112 (269)
T ss_dssp EEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCS-------SCEEEEEECTTSSEEEEEECTTSSC--EEEEE
T ss_pred eEECCCCCEEEEEEeec--cCcceeeeecccCceeEEeeee-------cccccceecCCCCeeeEeeecCCcc--ceeec
Confidence 44569999999998765 3467888888888888887632 3456789999999999998877654 55566
Q ss_pred ECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc---------cceeeeeeecCCC
Q psy1288 189 DVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV---------APITSQYITNEGP 259 (1012)
Q Consensus 189 dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~---------~~i~~~~~s~dg~ 259 (1012)
.....+.............+.|+++++.++++..+.. ...++....... .....+.|+|+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 183 (269)
T d2hqsa1 113 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG---------RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK 183 (269)
T ss_dssp ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS---------SCEEEEEETTSSCCEECCCSSSEEEEEEECTTSS
T ss_pred ccccccceeeeeccccccccccccccccceecccccC---------CceEeeeecccccceeeecccccccccccccccc
Confidence 6555554443333333466889999999999875432 112222111000 1122456999999
Q ss_pred EEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD 339 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~ 339 (1012)
.+++..+++ ....++..+..... .+++...... ......+||+.|++....++..+|++++++ |...+.|+..
T Consensus 184 ~~~~~~~~~-~~~~i~~~~~~~~~----~~~~~~~~~~-~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d-g~~~~~lt~~ 256 (269)
T d2hqsa1 184 FMVMVSSNG-GQQHIAKQDLATGG----VQVLSSTFLD-ETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT 256 (269)
T ss_dssp EEEEEEECS-SCEEEEEEETTTCC----EEECCCSSSC-EEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS
T ss_pred eeEEEeecC-CceeeeEeeccccc----ceEeecCccc-cceEECCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEeCC
Confidence 999998765 35778888876654 3444433222 222344677899998888888999999995 5445667766
Q ss_pred ceEEEeecccc
Q psy1288 340 VGTIVGFSGKK 350 (1012)
Q Consensus 340 ~~~v~~~~~sp 350 (1012)
.+.+..++|||
T Consensus 257 ~g~~~~p~WSP 267 (269)
T d2hqsa1 257 DGQVKFPAWSP 267 (269)
T ss_dssp SSEEEEEEECC
T ss_pred CCcEEeEEeCC
Confidence 77777888987
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.28 E-value=1.1e-11 Score=125.35 Aligned_cols=183 Identities=16% Similarity=0.085 Sum_probs=116.8
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCC-CchhHHhhhhcCCCcchHhHHHHHHHHH---H
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGE-YGERWHDGGRLLNKQNVFDDFQCAAEYL---I 504 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~-~g~~~~~~~~~~~~~~~~~D~~a~~~~l---~ 504 (1012)
.++.|+||++||+.+... .|. .....+.. ++.|+.++.+.... ....+..... ......|+...+..+ +
T Consensus 14 ~~~~P~vi~lHG~G~~~~--~~~-~~~~~l~~-~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l 86 (203)
T d2r8ba1 14 VAGAPLFVLLHGTGGDEN--QFF-DFGARLLP-QATILSPVGDVSEHGAARFFRRTGE---GVYDMVDLERATGKMADFI 86 (203)
T ss_dssp CTTSCEEEEECCTTCCHH--HHH-HHHHHHST-TSEEEEECCSEEETTEEESSCBCGG---GCBCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHH--HHH-HHHHHhcc-CCeEEEeccccccccccccccccCc---cccchhHHHHHHHHHHHHH
Confidence 456899999999654321 222 22344543 67777775543221 1111111111 111223333332222 2
Q ss_pred Hc--CCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccc
Q psy1288 505 AS--GYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKI 582 (1012)
Q Consensus 505 ~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ 582 (1012)
+. ...++++++++|+|+||.++..++...|+.+.++++..+ ..
T Consensus 87 ~~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~-------------------------~~---------- 131 (203)
T d2r8ba1 87 KANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHP-------------------------LI---------- 131 (203)
T ss_dssp HHHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESC-------------------------CC----------
T ss_pred HHhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecc-------------------------cc----------
Confidence 11 235789999999999999999999999999999998887 00
Q ss_pred cCCCCcchhhhhhhhhhhccccccccccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCCh
Q psy1288 583 EGKLPLTQVVHKVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSP 662 (1012)
Q Consensus 583 ~~~~plt~~~~~~~d~~~~~~~~~g~~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~ 662 (1012)
|. ... ... ....++++++||.+|+.||+
T Consensus 132 ----~~-----------------------~~~------------------~~~-------~~~~~~~~i~hG~~D~~vp~ 159 (203)
T d2r8ba1 132 ----PF-----------------------EPK------------------ISP-------AKPTRRVLITAGERDPICPV 159 (203)
T ss_dssp ----CS-----------------------CCC------------------CCC-------CCTTCEEEEEEETTCTTSCH
T ss_pred ----cc-----------------------ccc------------------ccc-------ccccchhhccccCCCCcccH
Confidence 00 000 000 12223499999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHh
Q psy1288 663 VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 663 ~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~ 719 (1012)
.++.++.+.|++. +.++.++.+++ ||++.. +++.++.+||.++
T Consensus 160 ~~~~~~~~~L~~~-------g~~v~~~~~~g-gH~~~~------~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 160 QLTKALEESLKAQ-------GGTVETVWHPG-GHEIRS------GEIDAVRGFLAAY 202 (203)
T ss_dssp HHHHHHHHHHHHH-------SSEEEEEEESS-CSSCCH------HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHC-------CCCEEEEEECC-CCcCCH------HHHHHHHHHHHhc
Confidence 9999999999999 99999999986 699743 4456677898875
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.28 E-value=1.4e-10 Score=133.24 Aligned_cols=254 Identities=12% Similarity=0.027 Sum_probs=150.9
Q ss_pred CeeeCCEEEEEEEcCC----CCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 111 PQRQGDHYFFFHNTGL----QNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~----~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
.+|||++++|.++... .....+|+.+..+++...++. ....+..+.|||||++|||..+. +||
T Consensus 69 ~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~-------~~~~~~~~~~SPDG~~ia~~~~~------~l~ 135 (470)
T d2bgra1 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER-------IPNNTQWVTWSPVGHKLAYVWNN------DIY 135 (470)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------CCTTEEEEEECSSTTCEEEEETT------EEE
T ss_pred ECCCCCEEEEEECCcceeeeccCceEEEEECCCCccccccc-------CCccccccccccCcceeeEeecc------cce
Confidence 3599999999876321 124578888888776555544 22246789999999999997542 799
Q ss_pred EEECCCCceeceeecce-------------------eeeeeEEeeCCCeEEEEecCCCCC--------c-----c-----
Q psy1288 187 FKDVATGKEYPEVLHRL-------------------KFVSIAWTHDHKGVFYSNQEPKSK--------S-----K----- 229 (1012)
Q Consensus 187 v~dl~tg~~~~~t~~~~-------------------~~~~~~WSpDG~~l~y~~~~~~~~--------g-----~----- 229 (1012)
++++.+|+..+++.... ....+.|||||+.|+|.+.+.... + .
T Consensus 136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (470)
T d2bgra1 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (470)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence 99999998765443211 124577999999999986432110 0 0
Q ss_pred ---c---CCCCCceEEEEee----------------------------------------------ccc-----------
Q psy1288 230 ---K---HSKKNRSSAYHLT----------------------------------------------VNV----------- 246 (1012)
Q Consensus 230 ---~---~~~~~~~l~~~~~----------------------------------------------~~~----------- 246 (1012)
. ..+....+..... .+.
T Consensus 216 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~ 295 (470)
T d2bgra1 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (470)
T ss_dssp EECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred eccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCC
Confidence 0 0000000000000 000
Q ss_pred cc------------------e-----eeeeeecCCCEEE-EEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeee
Q psy1288 247 AP------------------I-----TSQYITNEGPQFV-FKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWA 302 (1012)
Q Consensus 247 ~~------------------i-----~~~~~s~dg~~l~-~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~ 302 (1012)
.+ + ..+.++++++.++ +.+.++ ...+||.++.++.. .+.|+ .....+...
T Consensus 296 tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~d-g~~~ly~~~~~g~~---~~~lt-~g~~~v~~~- 369 (470)
T d2bgra1 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEE-GYRHICYFQIDKKD---CTFIT-KGTWEVIGI- 369 (470)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTT-SCEEEEEEETTCSC---CEESC-CSSSCEEEE-
T ss_pred CCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccC-cCceeEEEeccCCc---eeeec-cCCeeEEEE-
Confidence 00 0 0123455565544 344443 35678888876654 23443 333444443
Q ss_pred EEecCCEEEEEEEcCc----eEEEEEEecCCCceeeeecCC----ceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 303 TCVANDKLILSYIHHV----KNVMHLHDLASGKHLYTFPLD----VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 303 ~~~~~~~l~~~~~~~g----~~~l~~~dl~~G~~~~~l~~~----~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
...+++.+++.....+ ..+||.+++.++...+.|+.. .+.+..+++||||+.++.+++++.+|.. .+++.
T Consensus 370 ~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~-~l~~~- 447 (470)
T d2bgra1 370 EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLY-TLHSS- 447 (470)
T ss_dssp EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEE-EEEET-
T ss_pred EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeE-EEEEC-
Confidence 3345578887765432 458999999655555556532 3445678899999999999999998874 55666
Q ss_pred CCCCCCCCcceEEEEe
Q psy1288 375 ARVDPNSKLETSIFRE 390 (1012)
Q Consensus 375 ~~~~~~g~~~~~~l~~ 390 (1012)
.+|+ ..+.|+.
T Consensus 448 ----~~g~-~v~~le~ 458 (470)
T d2bgra1 448 ----VNDK-GLRVLED 458 (470)
T ss_dssp ----TTTE-EEEEEEC
T ss_pred ----CCCC-EEEEEec
Confidence 3553 4555553
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.23 E-value=5.4e-11 Score=131.55 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=92.6
Q ss_pred CCceEEEEEECCCCceEEEEEEE--eCCCCCCCCCcEEEEEcCCCCCCCCCCc---ChhHHHHHHhCCeEEEEEcCCCCC
Q psy1288 400 LFETKQVFYPSKDGTKIPMFILS--RKGAQLDGNNPCILYGYGGFAVSLQPGF---SVTKIVFLRDFNGIYAIPNIRGGG 474 (1012)
Q Consensus 400 ~~~~~~v~~~s~DG~~i~~~l~~--p~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~~~~l~~~G~~v~~~d~RG~g 474 (1012)
+|..|+..+++.||..|..+.+. +......++.|.||++||..+....... .......|.++||.|+++|.||.|
T Consensus 24 ~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~G 103 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNT 103 (377)
T ss_dssp TCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTST
T ss_pred CCCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCCC
Confidence 46678888999999888765442 2333346778999999997655432211 122455677789999999999988
Q ss_pred CCchhHH-hhhhcCCC-----cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEE
Q psy1288 475 EYGERWH-DGGRLLNK-----QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541 (1012)
Q Consensus 475 ~~g~~~~-~~~~~~~~-----~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 541 (1012)
.....-. ........ .....|+.++++++.+.. ..+++.++|||+||.+++.++.++|+....++
T Consensus 104 ~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~ 174 (377)
T d1k8qa_ 104 WARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIK 174 (377)
T ss_dssp TSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEE
T ss_pred CCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhce
Confidence 5432100 00000000 112457788888877652 24689999999999999999999887654433
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.22 E-value=2e-09 Score=123.18 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=72.2
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC----CCceEEEEEEECCCCceeceeecceeee
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS----GSDWTSMHFKDVATGKEYPEVLHRLKFV 206 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~----G~~~~~L~v~dl~tg~~~~~t~~~~~~~ 206 (1012)
.|++.+..+++.++|++...+...+ ..+.+++|||||++|||..+.. .+...++|++|+++|+..+++.......
T Consensus 37 ~~~~~~~~t~~~~~~~~~~~~~~~~-~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~ 115 (470)
T d2bgra1 37 NILVFNAEYGNSSVFLENSTFDEFG-HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ 115 (470)
T ss_dssp CEEEEETTTCCEEEEECTTTTTTSS-SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE
T ss_pred cEEEEECCCCCEEEEEchhhhhhcc-CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccc
Confidence 4788888889889999876665332 2577899999999999987632 1234589999999999877666555567
Q ss_pred eeEEeeCCCeEEEEecC
Q psy1288 207 SIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 207 ~~~WSpDG~~l~y~~~~ 223 (1012)
.+.|||||+.|+|+.+.
T Consensus 116 ~~~~SPDG~~ia~~~~~ 132 (470)
T d2bgra1 116 WVTWSPVGHKLAYVWNN 132 (470)
T ss_dssp EEEECSSTTCEEEEETT
T ss_pred ccccccCcceeeEeecc
Confidence 89999999999998753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.6e-10 Score=132.19 Aligned_cols=250 Identities=11% Similarity=0.066 Sum_probs=151.8
Q ss_pred CeeeCCEEEEEEEcCCC----CeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEE
Q psy1288 111 PQRQGDHYFFFHNTGLQ----NHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMH 186 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~----~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~ 186 (1012)
.+|||++++|..+.... ....+|+.+...+..+.|..... +...+..+.|||||++|||+.+. +||
T Consensus 68 ~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~----~~~~l~~~~wSPDG~~iafv~~~------nl~ 137 (465)
T d1xfda1 68 ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV----SNAKLQYAGWGPKGQQLIFIFEN------NIY 137 (465)
T ss_dssp ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC----CSCCCSBCCBCSSTTCEEEEETT------EEE
T ss_pred ECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC----CccccceeeeccCCceEEEEecc------eEE
Confidence 36999999887653211 13478888888888777755321 22346679999999999998742 799
Q ss_pred EEECCCCceeceeeccee-------------------eeeeEEeeCCCeEEEEecCCCCCc---------c---------
Q psy1288 187 FKDVATGKEYPEVLHRLK-------------------FVSIAWTHDHKGVFYSNQEPKSKS---------K--------- 229 (1012)
Q Consensus 187 v~dl~tg~~~~~t~~~~~-------------------~~~~~WSpDG~~l~y~~~~~~~~g---------~--------- 229 (1012)
++++.+++..+++..+.. ...+.|||||+.|+|.+.+..... .
T Consensus 138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~ 217 (465)
T d1xfda1 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH 217 (465)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence 999998887766543221 145779999999999974432100 0
Q ss_pred --cCCCCCc--eEEEEeec-ccc-------------c--eeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEE
Q psy1288 230 --KHSKKNR--SSAYHLTV-NVA-------------P--ITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKT 289 (1012)
Q Consensus 230 --~~~~~~~--~l~~~~~~-~~~-------------~--i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~ 289 (1012)
..+..+. +++..... +.. . +....|+++++.+++..|+......++.+|..+++ .+.
T Consensus 218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~---~~~ 294 (465)
T d1xfda1 218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTK 294 (465)
T ss_dssp CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEE
T ss_pred ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc---EEE
Confidence 0001111 12111110 000 0 11235888887677778888888899999998876 455
Q ss_pred eeccCCCceee-----eeEEecCCEEEEE--EEcCceEEEEEEecC------CCceeeeecCCceEEEe-ecccccCcEE
Q psy1288 290 LIEENKDDVLD-----WATCVANDKLILS--YIHHVKNVMHLHDLA------SGKHLYTFPLDVGTIVG-FSGKKKYSEI 355 (1012)
Q Consensus 290 l~~~~~~~~~~-----~~~~~~~~~l~~~--~~~~g~~~l~~~dl~------~G~~~~~l~~~~~~v~~-~~~spdg~~l 355 (1012)
++.+.....++ .....+++.+++. ...++..+++.+.+. .|+..+.|+.....|.. +.++.+++.|
T Consensus 295 ~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~v 374 (465)
T d1xfda1 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKI 374 (465)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEE
T ss_pred EEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEE
Confidence 55443222211 1233454544443 345566777766542 23344566655444433 4678889999
Q ss_pred EEEecCCCCC--cEEEEEeCC
Q psy1288 356 FYSFMSFLQP--TIIFHCNIP 374 (1012)
Q Consensus 356 ~~~~ss~~~p--~~l~~~d~~ 374 (1012)
+|.++. ..| ..||++++.
T Consensus 375 yF~a~~-~~p~~~hly~v~l~ 394 (465)
T d1xfda1 375 YFLSTE-DLPRRRQLYSANTV 394 (465)
T ss_dssp EEEESS-SCTTCCEEEEECSS
T ss_pred EEEEeC-CCCCceEEEEEECC
Confidence 998764 345 369999883
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.21 E-value=6.1e-11 Score=126.35 Aligned_cols=137 Identities=16% Similarity=0.092 Sum_probs=92.3
Q ss_pred CceEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcC--hhHHHHHHhCCeEEEEEcCCCCCCCc
Q psy1288 401 FETKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFS--VTKIVFLRDFNGIYAIPNIRGGGEYG 477 (1012)
Q Consensus 401 ~~~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~d~RG~g~~g 477 (1012)
+.++.+.++|+ -|+.|++.+. .++.|+|++.||..+......|. ....+++++.|++|+.++-.. ..+.
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~~-------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~-~~~~ 75 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQFQ-------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQ-SSFY 75 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEEE-------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCT-TCTT
T ss_pred cEEEEEEEecccCCCcceEEee-------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCC-CCcC
Confidence 34667777775 5788887763 24679999999965433333342 224567778899999998533 2333
Q ss_pred hhHHhhhhcC--CCcchHhHH--HHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 478 ERWHDGGRLL--NKQNVFDDF--QCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 478 ~~~~~~~~~~--~~~~~~~D~--~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..|....... .+...++++ ...+.++.++..+++++++|.|+|+||++++.++.++|++|+++++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG 147 (280)
T d1dqza_ 76 TDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSG 147 (280)
T ss_dssp SBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESC
T ss_pred ccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecC
Confidence 4443322211 112223333 2334555566567999999999999999999999999999999999998
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=8.8e-10 Score=125.96 Aligned_cols=269 Identities=12% Similarity=0.105 Sum_probs=154.0
Q ss_pred CCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCC---CC--------C-ceEeeeEEECCCCcEEEEEE
Q psy1288 108 YSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLS---DD--------G-TVSLGSYSFSEDGKTLAYCL 175 (1012)
Q Consensus 108 ~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la---~~--------g-~~~i~~~~~SPDGk~iAy~~ 175 (1012)
.+.++|||++++|+++ ..||.++..++.+.++|.-..-. .+ + .....++.|||||++|||..
T Consensus 118 ~~~wSPDG~~iafv~~------~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 118 YAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp BCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred eeeeccCCceEEEEec------ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 3556799999999984 35899988777777776522100 00 0 00124678999999999975
Q ss_pred eCC---------------------------C--CceEEEEEEECCCCceeceeecc-------eeeeeeEEeeCCCeEEE
Q psy1288 176 SSS---------------------------G--SDWTSMHFKDVATGKEYPEVLHR-------LKFVSIAWTHDHKGVFY 219 (1012)
Q Consensus 176 ~~~---------------------------G--~~~~~L~v~dl~tg~~~~~t~~~-------~~~~~~~WSpDG~~l~y 219 (1012)
-.. | +...+|+++|++++......... .-...+.|+||++.+++
T Consensus 192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~ 271 (465)
T d1xfda1 192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (465)
T ss_dssp EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEE
Confidence 321 0 11248999999887643222111 11356899999986555
Q ss_pred EecCCCCCcc---cCC-CCCceEEEEeeccc--c-ceeeeeeecCCCEEEEEE-CCCCCCceEEEEeCCCC----cccCc
Q psy1288 220 SNQEPKSKSK---KHS-KKNRSSAYHLTVNV--A-PITSQYITNEGPQFVFKT-NKDAPNYRLITIDFDNF----AESNW 287 (1012)
Q Consensus 220 ~~~~~~~~g~---~~~-~~~~~l~~~~~~~~--~-~i~~~~~s~dg~~l~~~t-n~~~~~~~L~~~dl~~~----~~~~~ 287 (1012)
..++...... .+. ....+.++.+..+. . ....+.|++||+.++|+. .......+++.+.+... .....
T Consensus 272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~ 351 (465)
T d1xfda1 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI 351 (465)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCcee
Confidence 5555322110 010 01122222221110 0 012356999999887763 22233455666654321 11123
Q ss_pred EEeeccCCCceeeeeEEe-cCCEEEEEEEcCc--eEEEEEEecCCCceeeeecCC---ceEEEeecccccCcEEEEEecC
Q psy1288 288 KTLIEENKDDVLDWATCV-ANDKLILSYIHHV--KNVMHLHDLASGKHLYTFPLD---VGTIVGFSGKKKYSEIFYSFMS 361 (1012)
Q Consensus 288 ~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g--~~~l~~~dl~~G~~~~~l~~~---~~~v~~~~~spdg~~l~~~~ss 361 (1012)
+.|+ ..+..+.+...+. +++.++|....+. ..+||.++++++...+.++.. .+....+++||+++.++..+++
T Consensus 352 ~~LT-~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~ 430 (465)
T d1xfda1 352 QSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (465)
T ss_dssp CBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred EEec-cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeec
Confidence 3444 4445555544443 3468888776543 568999999655444555532 3344467889999999999999
Q ss_pred CCCCcEEEEEeCCCCCCCCCCcceEEEEe
Q psy1288 362 FLQPTIIFHCNIPARVDPNSKLETSIFRE 390 (1012)
Q Consensus 362 ~~~p~~l~~~d~~~~~~~~g~~~~~~l~~ 390 (1012)
+..|. +.+++. .+++ ....|+.
T Consensus 431 ~~~P~-~~~~~~-----~~~~-~~~~Le~ 452 (465)
T d1xfda1 431 PGVPM-VTVHNT-----TDKK-KMFDLET 452 (465)
T ss_dssp SSSCC-EEEEET-----TTCC-EEEEEEC
T ss_pred CCCCe-EEEEEC-----CCCC-EEEEEcC
Confidence 87776 566666 3453 3445543
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.18 E-value=5.4e-10 Score=117.19 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=75.8
Q ss_pred EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 407 FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 407 ~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
+++++||.+|.+... + ..|.||++||...... .|... ...|.++||.|+++|.||.|.....
T Consensus 2 ~~~t~dG~~l~y~~~---G-----~g~~ivlvHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (274)
T d1a8qa_ 2 ICTTRDGVEIFYKDW---G-----QGRPVVFIHGWPLNGD--AWQDQ-LKAVVDAGYRGIAHDRRGHGHSTPV------- 63 (274)
T ss_dssp EEECTTSCEEEEEEE---C-----SSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred eEECcCCCEEEEEEE---C-----CCCeEEEECCCCCCHH--HHHHH-HHHHHHCCCEEEEEeCCCCcccccc-------
Confidence 367899998886543 2 2356888999754432 34433 3445557999999999998754211
Q ss_pred CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHH-hhCCCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACI-NQRPDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~~ 545 (1012)
.......++...+..+++. ...+++.++|+|+||.+++..+ ...|+++++.+...+
T Consensus 64 -~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~ 120 (274)
T d1a8qa_ 64 -WDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSA 120 (274)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred -cccccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEec
Confidence 1122333443333333433 2346899999999998887754 455888888777655
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.18 E-value=3.8e-11 Score=127.06 Aligned_cols=130 Identities=19% Similarity=0.181 Sum_probs=90.1
Q ss_pred eEEEEEECC-CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCc--ChhHHHHHHhCCeEEEEEcCCCCCCCchh
Q psy1288 403 TKQVFYPSK-DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGF--SVTKIVFLRDFNGIYAIPNIRGGGEYGER 479 (1012)
Q Consensus 403 ~~~v~~~s~-DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~~~l~~~G~~v~~~d~RG~g~~g~~ 479 (1012)
+|++.++|+ .|+.|+..+..+ ..|+|+++||..+......| .....+.+++.+++|+.+|-. .+.+...
T Consensus 4 ~e~~~v~s~~~~r~~~~~v~~~-------~~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~-~~~~y~~ 75 (267)
T d1r88a_ 4 YENLMVPSPSMGRDIPVAFLAG-------GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGG-AYSMYTN 75 (267)
T ss_dssp CEEEEEEETTTTEEEEEEEECC-------SSSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCC-TTSTTSB
T ss_pred eEEEEEecccCCceeeEEEECC-------CCCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCC-CCcCCcc
Confidence 467778776 577898877643 23899999995443322233 223456677789999999842 2223333
Q ss_pred HHhhhhcCCCcchHhHHHH--HHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 480 WHDGGRLLNKQNVFDDFQC--AAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 480 ~~~~~~~~~~~~~~~D~~a--~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
|... +...+++++. .+.++.++-.+++++++|.|.||||++++.++.++|++|+++++.+|
T Consensus 76 ~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG 138 (267)
T d1r88a_ 76 WEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSG 138 (267)
T ss_dssp CSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCC
Confidence 3221 1222444443 35566666668999999999999999999999999999999999998
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.16 E-value=4.1e-10 Score=114.96 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=52.6
Q ss_pred CCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCC
Q psy1288 645 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGP 721 (1012)
Q Consensus 645 ~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~ 721 (1012)
+.| +|++||..|..||+..+.+.+..|+++ +..++++.++ ++|+... +.+.++.+||.+.|+
T Consensus 157 ~~p-vl~~hG~~D~vvp~~~~~~~~~~L~~~-------g~~~~~~~~~-~gH~i~~------~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 157 RIP-ALCLHGQYDDVVQNAMGRSAFEHLKSR-------GVTVTWQEYP-MGHEVLP------QEIHDIGAWLAARLG 218 (218)
T ss_dssp TCC-EEEEEETTCSSSCHHHHHHHHHHHHTT-------TCCEEEEEES-CSSSCCH------HHHHHHHHHHHHHHC
T ss_pred CCC-EEEEecCCCCccCHHHHHHHHHHHHHC-------CCCEEEEEEC-CCCccCH------HHHHHHHHHHHHhcC
Confidence 455 999999999999999999999999998 8899999997 7897643 456678899988753
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.5e-11 Score=121.30 Aligned_cols=121 Identities=8% Similarity=-0.058 Sum_probs=78.5
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcCh-hHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSV-TKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
-+|.+|.+....|.. ....|.||++||...... .|.. .....|+++||.|+++|.||.|..... .......
T Consensus 13 v~G~~i~y~~~~~~~---~~~~~~vvllHG~~~~~~--~w~~~~~~~~la~~gy~via~D~~G~G~S~~~---~~~~~~~ 84 (208)
T d1imja_ 13 VQGQALFFREALPGS---GQARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEA---AAPAPIG 84 (208)
T ss_dssp ETTEEECEEEEECSS---SCCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTS---CCSSCTT
T ss_pred ECCEEEEEEEecCCC---CCCCCeEEEECCCCCChh--HHhhhHHHHHHHHcCCeEEEeecccccCCCCC---Ccccccc
Confidence 489899887777653 345678999999754332 2322 123557778999999999997632111 1011111
Q ss_pred cchH-hHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVF-DDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~-~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.... +++.+. ++. .+.+++.++|+|+||.+++.++.++|++++++|...|
T Consensus 85 ~~~~~~~l~~~----~~~--l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p 135 (208)
T d1imja_ 85 ELAPGSFLAAV----VDA--LELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAP 135 (208)
T ss_dssp SCCCTHHHHHH----HHH--HTCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESC
T ss_pred hhhhhhhhhhc----ccc--cccccccccccCcHHHHHHHHHHHhhhhcceeeecCc
Confidence 1111 222222 222 2346788999999999999999999999999998877
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.15 E-value=8.5e-11 Score=116.68 Aligned_cols=85 Identities=12% Similarity=-0.148 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCc
Q psy1288 434 CILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSR 513 (1012)
Q Consensus 434 ~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~ 513 (1012)
.|+++||..+.... .|...+...|+++||.|+.+|++|.+.. ..+|+...+..+. .....+
T Consensus 3 ~V~~vHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~p~~~~~---------------~~~~~~~~l~~~~---~~~~~~ 63 (186)
T d1uxoa_ 3 QVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQ---HTLHEN 63 (186)
T ss_dssp EEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTG---GGCCTT
T ss_pred EEEEECCCCCCcch-hHHHHHHHHHHhCCCEEEEeccCCCCcc---------------hHHHHHHHHHHHH---hccCCC
Confidence 58889996543322 2333345667778999999999986532 1334443333333 345678
Q ss_pred EEEEecChHHHHHHHHHhhCCCce
Q psy1288 514 LAIQGGSNGGLLTAACINQRPDLF 537 (1012)
Q Consensus 514 i~i~G~S~GG~l~~~~~~~~p~~f 537 (1012)
+.++|+|+||.+++.++.+.|+..
T Consensus 64 ~~lvGhS~Gg~~a~~~a~~~~~~~ 87 (186)
T d1uxoa_ 64 TYLVAHSLGCPAILRFLEHLQLRA 87 (186)
T ss_dssp EEEEEETTHHHHHHHHHHTCCCSS
T ss_pred cEEEEechhhHHHHHHHHhCCccc
Confidence 999999999999999999888654
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.14 E-value=1.4e-09 Score=115.57 Aligned_cols=119 Identities=17% Similarity=0.116 Sum_probs=81.8
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
+|.+|.+..+-+ ...|.||++||...... .|...+...|.++||.|+++|.||.|....... .....
T Consensus 8 g~~~i~y~~~G~------~~~p~vvl~HG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-----~~~~~ 74 (297)
T d1q0ra_ 8 GDVELWSDDFGD------PADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTRDF-----AAHPY 74 (297)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCT-----TTSCC
T ss_pred CCEEEEEEEecC------CCCCEEEEECCCCcChh--HHHHHHHHHHHhCCCEEEEEeCCCCcccccccc-----ccccc
Confidence 567777665532 23578999999854432 344444555666799999999999885432111 11112
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++|+...+..+++. .+.+++.++|+|+||.+++.++.++|+++.+++...+
T Consensus 75 ~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~ 126 (297)
T d1q0ra_ 75 GFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLG 126 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEcc
Confidence 456665555555544 3456799999999999999999999999999888766
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.13 E-value=5.7e-11 Score=125.79 Aligned_cols=144 Identities=15% Similarity=-0.021 Sum_probs=94.1
Q ss_pred CceEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCC-cChhH-------HHHHHhCCeEEEEEcCCC
Q psy1288 401 FETKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG-FSVTK-------IVFLRDFNGIYAIPNIRG 472 (1012)
Q Consensus 401 ~~~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~-~~~~~-------~~~l~~~G~~v~~~d~RG 472 (1012)
-..+.+.+++.+|. ..+.++.|+++++++++|+|+++||+.+...+.. +.... ........++|+.++.++
T Consensus 25 g~v~~~~~~~~~~~-r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 103 (273)
T d1wb4a1 25 GRIVKETYTGINGT-KSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNG 103 (273)
T ss_dssp CEEEEEEEEETTEE-EEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCS
T ss_pred CeEEEEEEecCCCe-EEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCC
Confidence 36788889998885 4899999999988889999999999865443221 11111 111112258888888887
Q ss_pred CCCCchhHHhhhhcCCCcch-HhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 473 GGEYGERWHDGGRLLNKQNV-FDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 473 ~g~~g~~~~~~~~~~~~~~~-~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+..+............ ..++...+..+.....+|+++++++|+|+||++++.++.++|++|+++++.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg 177 (273)
T d1wb4a1 104 GNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSG 177 (273)
T ss_dssp TTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESC
T ss_pred CCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCc
Confidence 66655554332111100000 00000011111222336889999999999999999999999999999999988
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.07 E-value=1.9e-10 Score=117.13 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..+.||++||..+... .|.. ....|+++||.|+++|+||.|........ ........+....+..+... .
T Consensus 10 ~~~~vvliHG~~~~~~--~~~~-l~~~L~~~G~~v~~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~---~ 79 (242)
T d1tqha_ 10 GERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPPEELVH----TGPDDWWQDVMNGYEFLKNK---G 79 (242)
T ss_dssp SSCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCHHHHTT----CCHHHHHHHHHHHHHHHHHH---T
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEEeCCCCccccccccc----cchhHHHHHHHHHHhhhhhc---c
Confidence 3456888999754332 2333 34567778999999999998854332211 11111223333344433333 4
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEE
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAI 541 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v 541 (1012)
.+++.++|+|+||.++..++.++|......+
T Consensus 80 ~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~ 110 (242)
T d1tqha_ 80 YEKIAVAGLSLGGVFSLKLGYTVPIEGIVTM 110 (242)
T ss_dssp CCCEEEEEETHHHHHHHHHHTTSCCSCEEEE
T ss_pred cCceEEEEcchHHHHhhhhcccCcccccccc
Confidence 5789999999999999999998887654443
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.03 E-value=1.5e-09 Score=113.67 Aligned_cols=117 Identities=14% Similarity=0.044 Sum_probs=78.2
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
..||.++.+.-. + ..|.||++||....... ..|.. ....|+ +||.|+++|.||.|..... ..
T Consensus 9 ~~~G~~~~Y~~~---G-----~G~pvvllHG~~~~~~~~~~~~~-~~~~l~-~~~~vi~~Dl~G~G~S~~~-------~~ 71 (271)
T d1uk8a_ 9 LAAGVLTNYHDV---G-----EGQPVILIHGSGPGVSAYANWRL-TIPALS-KFYRVIAPDMVGFGFTDRP-------EN 71 (271)
T ss_dssp EETTEEEEEEEE---C-----CSSEEEEECCCSTTCCHHHHHTT-THHHHT-TTSEEEEECCTTSTTSCCC-------TT
T ss_pred EECCEEEEEEEE---e-----eCCeEEEECCCCCCccHHHHHHH-HHHHHh-CCCEEEEEeCCCCCCcccc-------cc
Confidence 347888876543 2 23567889997543221 11222 234555 5999999999998754221 11
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.....++....+..+++.- +.+++.++|+|+||.+++.++.++|+.+.+++...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~l--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~ 126 (271)
T d1uk8a_ 72 YNYSKDSWVDHIIGIMDAL--EIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGA 126 (271)
T ss_dssp CCCCHHHHHHHHHHHHHHT--TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ccccccccchhhhhhhhhh--cCCCceEeeccccceeehHHHHhhhccchheeeccc
Confidence 2233455666666666552 446899999999999999999999999999888765
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=98.99 E-value=2.9e-09 Score=111.11 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
.||.+|.+.. .+ ..|.||++||..+.... ..|... ...|+ +||.|+++|.||.|.... ...
T Consensus 9 ~dg~~l~y~~---~G-----~g~~vvllHG~~~~~~~~~~~~~~-~~~l~-~~~~v~~~D~~G~G~S~~--------~~~ 70 (268)
T d1j1ia_ 9 AGGVETRYLE---AG-----KGQPVILIHGGGAGAESEGNWRNV-IPILA-RHYRVIAMDMLGFGKTAK--------PDI 70 (268)
T ss_dssp ETTEEEEEEE---EC-----CSSEEEEECCCSTTCCHHHHHTTT-HHHHT-TTSEEEEECCTTSTTSCC--------CSS
T ss_pred ECCEEEEEEE---Ec-----CCCeEEEECCCCCCccHHHHHHHH-HHHHh-cCCEEEEEcccccccccC--------Ccc
Confidence 4899887643 22 23568889997543221 123332 34565 599999999999875321 111
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++...+..+++.-.. ..++.++|+|+||.+++.++.++|++++.+|...+
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~ 125 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGS 125 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCC
Confidence 22344444444444443222 24688999999999999999999999999888766
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=98.97 E-value=3.7e-09 Score=110.50 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=78.3
Q ss_pred EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 407 FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 407 ~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
++++.||.+|.+..+.|++ .|.||++||...... .|... ...|.++||.|+++|.||.|.....
T Consensus 2 ~i~~~dG~~l~y~~~G~~~------~~~vv~lHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~s~~~------- 65 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD------GLPVVFHHGWPLSAD--DWDNQ-MLFFLSHGYRVIAHDRRGHGRSDQP------- 65 (275)
T ss_dssp EEECTTSCEEEEEEESCTT------SCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEecCCCEEEEEEecCCC------CCeEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEEecccccccccc-------
Confidence 3678899999887775432 367889999765432 34433 3445457999999999997754211
Q ss_pred CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecCh-HHHHHHHHHhhCCCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSN-GGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~-GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.....++++...+..+++. .+.+++.++|+|+ ||.++..++.++|+++...+...+
T Consensus 66 -~~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~ 122 (275)
T d1a88a_ 66 -STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSA 122 (275)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESC
T ss_pred -ccccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcc
Confidence 1122344444444444443 2345778888886 555666677888999998887765
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=6.5e-09 Score=111.66 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=83.5
Q ss_pred EEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhh
Q psy1288 406 VFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGR 485 (1012)
Q Consensus 406 v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~ 485 (1012)
.++..+||.+|.+.-. + ..|.||++||...... .|... ...|.++||.|+++|.||.|.....
T Consensus 14 ~~v~~~~g~~i~y~~~---G-----~gp~vlllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~------ 76 (322)
T d1zd3a2 14 GYVTVKPRVRLHFVEL---G-----SGPAVCLCHGFPESWY--SWRYQ-IPALAQAGYRVLAMDMKGYGESSAP------ 76 (322)
T ss_dssp EEEEEETTEEEEEEEE---C-----CSSEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEEECTTSTTSCCC------
T ss_pred eEEEECCCCEEEEEEE---c-----CCCeEEEECCCCCCHH--HHHHH-HHHHHHCCCEEEEeccccccccccc------
Confidence 3456678988887543 2 3478999999765433 45543 4556667999999999998743211
Q ss_pred cCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......++++...+..+++. .+.+++.++|+|+||.+++.++.++|+++.+.+...+
T Consensus 77 ~~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 77 PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 011112345555555555554 2456899999999999999999999999998887654
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.96 E-value=1.3e-09 Score=114.67 Aligned_cols=121 Identities=18% Similarity=0.102 Sum_probs=78.4
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
..-||.+|.+..+..+ ...|.||++||+++... .|......++. +||.|+++|.||.|..... ..
T Consensus 7 ~~~~g~~i~y~~~g~~-----~~~~~iv~lHG~~g~~~--~~~~~~~~~~~-~~~~vi~~D~~G~G~S~~~-------~~ 71 (290)
T d1mtza_ 7 AKVNGIYIYYKLCKAP-----EEKAKLMTMHGGPGMSH--DYLLSLRDMTK-EGITVLFYDQFGCGRSEEP-------DQ 71 (290)
T ss_dssp EEETTEEEEEEEECCS-----SCSEEEEEECCTTTCCS--GGGGGGGGGGG-GTEEEEEECCTTSTTSCCC-------CG
T ss_pred EEECCEEEEEEEcCCC-----CCCCeEEEECCCCCchH--HHHHHHHHHHH-CCCEEEEEeCCCCcccccc-------cc
Confidence 3458999977655432 23578999999865443 33333333444 6999999999998754211 00
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++....+..+++.- ...+++.++|+|+||.+++.++.++|+++++.+...+
T Consensus 72 ~~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 127 (290)
T d1mtza_ 72 SKFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGG 127 (290)
T ss_dssp GGCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESC
T ss_pred ccccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeeccc
Confidence 1112333333333333321 1235899999999999999999999999999888766
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.95 E-value=8.8e-09 Score=107.07 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=76.2
Q ss_pred EECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcC
Q psy1288 408 YPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLL 487 (1012)
Q Consensus 408 ~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~ 487 (1012)
|.+.||.+|.+... + ..|.||++||..+... .|... ...|.++||.|+++|.||.|.... .
T Consensus 3 f~~~dG~~l~y~~~---G-----~g~~vv~lHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~S~~--------~ 63 (271)
T d1va4a_ 3 FVAKDGTQIYFKDW---G-----SGKPVLFSHGWLLDAD--MWEYQ-MEYLSSRGYRTIAFDRRGFGRSDQ--------P 63 (271)
T ss_dssp EECTTSCEEEEEEE---S-----SSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTSCC--------C
T ss_pred EEeECCeEEEEEEE---c-----CCCeEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEEeccccccccc--------c
Confidence 56789999976543 2 2356788999765432 34433 455666799999999999875421 1
Q ss_pred CCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHH-HHHhhCCCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTA-ACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~-~~~~~~p~~f~a~v~~~~ 545 (1012)
.....++++...+..+.+. .+.+++.++|+|.||.+++ .++.++|+++...+...+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~ 120 (271)
T d1va4a_ 64 WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGA 120 (271)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecc
Confidence 1122344554444444443 2456888899998886654 456677999988887765
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.95 E-value=6e-09 Score=109.57 Aligned_cols=109 Identities=10% Similarity=0.055 Sum_probs=73.4
Q ss_pred EEECCC--CcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEE
Q psy1288 162 YSFSED--GKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSA 239 (1012)
Q Consensus 162 ~~~SPD--Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~ 239 (1012)
+.+||| |++|||+.. | +||++|+++|+.++++........++|||||++|+|+..+.... ...+++
T Consensus 4 ~~~sPdi~G~~v~f~~~--~----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~------~~~~i~ 71 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--D----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL------NTADLY 71 (281)
T ss_dssp CCEEEEEETTEEEEEET--T----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTC------CEEEEE
T ss_pred cccCCCCCCCEEEEEeC--C----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCC------CceEEE
Confidence 467999 999999864 2 69999999999998887766678899999999999997542110 011222
Q ss_pred EEeeccc----------------cceeeeeeecCCCEEEEEECCCC--CCceEEEEeCCCC
Q psy1288 240 YHLTVNV----------------APITSQYITNEGPQFVFKTNKDA--PNYRLITIDFDNF 282 (1012)
Q Consensus 240 ~~~~~~~----------------~~i~~~~~s~dg~~l~~~tn~~~--~~~~L~~~dl~~~ 282 (1012)
.....+. .......|+|||+.|++...... ....++.++.+..
T Consensus 72 ~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 132 (281)
T d1k32a2 72 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI 132 (281)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred EEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc
Confidence 2111000 01124469999999999876432 2445666666544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.94 E-value=2.5e-08 Score=108.19 Aligned_cols=140 Identities=10% Similarity=0.079 Sum_probs=91.0
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
++|||+++++...+. ...|++.+..+++.+++.. +...+..++|||||++|++.... ..++++++
T Consensus 50 ~spDg~~l~~~~~~~---g~~v~v~d~~~~~~~~~~~-------~~~~v~~~~~spdg~~l~~~~~~-----~~~~~~~~ 114 (360)
T d1k32a3 50 RGGDTKVAFIHGTRE---GDFLGIYDYRTGKAEKFEE-------NLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDL 114 (360)
T ss_dssp ECSSSEEEEEEEETT---EEEEEEEETTTCCEEECCC-------CCCSEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred ECCCCCEEEEEEcCC---CCEEEEEECCCCcEEEeeC-------CCceEEeeeecccccccceeccc-----cccccccc
Confidence 459999999987654 2457777887777776654 33457789999999999987653 27999999
Q ss_pred CCCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceE-EEEeecc--------ccceeeeeeecCCCE
Q psy1288 191 ATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSS-AYHLTVN--------VAPITSQYITNEGPQ 260 (1012)
Q Consensus 191 ~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l-~~~~~~~--------~~~i~~~~~s~dg~~ 260 (1012)
++++...... .......++|||||+.|+|........- .......+ ++....+ ........|+|||+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~--~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~ 192 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET--DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 192 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT--CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCE
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccce--eeccccceeeeccccCceeeecccccccccccccCCCCE
Confidence 9988755332 2334577999999999999864432100 00111111 1111100 011223469999999
Q ss_pred EEEEECC
Q psy1288 261 FVFKTNK 267 (1012)
Q Consensus 261 l~~~tn~ 267 (1012)
|++.+++
T Consensus 193 l~~~s~~ 199 (360)
T d1k32a3 193 LYYLSYR 199 (360)
T ss_dssp EEEEESC
T ss_pred EEEEeCC
Confidence 9998864
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=98.92 E-value=1.4e-08 Score=106.81 Aligned_cols=121 Identities=14% Similarity=0.042 Sum_probs=73.3
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
++.++.+...-+ ...|+||++||....... ..|... ...|+ +||.|+++|.||.|.....- .......
T Consensus 12 ~~~~~h~~~~G~------~~~p~ivllHG~~~~~~~~~~~~~~-~~~L~-~~~~vi~~D~~G~G~S~~~~---~~~~~~~ 80 (281)
T d1c4xa_ 12 GTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPI-IPDLA-ENFFVVAPDLIGFGQSEYPE---TYPGHIM 80 (281)
T ss_dssp TTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGG-HHHHH-TTSEEEEECCTTSTTSCCCS---SCCSSHH
T ss_pred CCEEEEEEEEec------CCCCEEEEECCCCCCCcHHHHHHHH-HHHHh-CCCEEEEEeCCCCccccccc---cccccch
Confidence 345666555322 235899999996433221 123332 45566 49999999999987532110 0000001
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++....+..+++. ...+++.++|+|+||.+++.++.++|+++++++...+
T Consensus 81 ~~~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~ 133 (281)
T d1c4xa_ 81 SWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGS 133 (281)
T ss_dssp HHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred hhHHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEecc
Confidence 1122333333333332 1335799999999999999999999999999888765
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=98.92 E-value=3.6e-08 Score=105.81 Aligned_cols=124 Identities=16% Similarity=0.073 Sum_probs=84.4
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
++-++...||.+|.+..+-.+ +.|.||++||+++.... |... ..+...||.|+++|.||.|.....
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~------~g~pvvllHG~~g~~~~--~~~~--~~~l~~~~~Vi~~D~rG~G~S~~~---- 77 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNP------HGKPVVMLHGGPGGGCN--DKMR--RFHDPAKYRIVLFDQRGSGRSTPH---- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECT------TSEEEEEECSTTTTCCC--GGGG--GGSCTTTEEEEEECCTTSTTSBST----
T ss_pred CCCEEEeCCCcEEEEEEecCC------CCCEEEEECCCCCCccc--hHHH--hHHhhcCCEEEEEeccccCCCCcc----
Confidence 555677889999987765422 23567789998765433 2221 222235999999999998754211
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.......+.++...+..+++. ...+++.++|+|+||.+++.++.++|+++...+...+
T Consensus 78 --~~~~~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~ 135 (313)
T d1azwa_ 78 --ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGI 135 (313)
T ss_dssp --TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --ccccchhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEecc
Confidence 112223455666556666655 2346789999999999999999999999998887765
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.92 E-value=2.3e-08 Score=108.58 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=74.5
Q ss_pred ee-eCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 112 QR-QGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 112 ~~-dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
+| ||+++++... ..||+.+..++..+++.. ...+..++|||||++|+++....| ..|+++|+
T Consensus 11 SP~dG~~~a~~~~------g~v~v~d~~~~~~~~~~~--------~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~ 73 (360)
T d1k32a3 11 SPLDGDLIAFVSR------GQAFIQDVSGTYVLKVPE--------PLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDY 73 (360)
T ss_dssp EECGGGCEEEEET------TEEEEECTTSSBEEECSC--------CSCEEEEEECSSSEEEEEEEETTE---EEEEEEET
T ss_pred cCCCCCEEEEEEC------CeEEEEECCCCcEEEccC--------CCCEEEEEECCCCCEEEEEEcCCC---CEEEEEEC
Confidence 59 9999999752 368888888777766533 235788999999999999887654 36999999
Q ss_pred CCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 191 ATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 191 ~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
++|+.+++.........++|||||+.|++...+
T Consensus 74 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~ 106 (360)
T d1k32a3 74 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR 106 (360)
T ss_dssp TTCCEEECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCCcEEEeeCCCceEEeeeecccccccceeccc
Confidence 999987765555556789999999999987654
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.91 E-value=1.7e-08 Score=105.17 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=74.8
Q ss_pred EEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 407 FYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 407 ~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
+|.+.||.+|.+... + ..|.||++||...... .|... ...|.++||.|+++|.||.|.....
T Consensus 2 ~f~~~dG~~i~y~~~---G-----~g~pvvllHG~~~~~~--~~~~~-~~~l~~~~~~vi~~D~~G~G~S~~~------- 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW---G-----SGQPIVFSHGWPLNAD--SWESQ-MIFLAAQGYRVIAHDRRGHGRSSQP------- 63 (273)
T ss_dssp EEECTTSCEEEEEEE---S-----CSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEEeeCCcEEEEEEE---C-----CCCeEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEEechhcCccccc-------
Confidence 367789999877543 2 2356778999765433 35443 3455557999999999998754211
Q ss_pred CCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHH-HHhhCCCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAA-CINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~-~~~~~p~~f~a~v~~~~ 545 (1012)
....+..++...+..+++. .+.++..++|+|+||.+++. ++...|+++..++...+
T Consensus 64 -~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~ 120 (273)
T d1a8sa_ 64 -WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISA 120 (273)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred -cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEec
Confidence 1122344555444444443 23456788899997765544 55667898888777655
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=98.91 E-value=6.2e-09 Score=111.57 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=83.1
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
+.||.++++.-.-+. ...|+||++||...... .|.... ..+.++|+.|+++|.||.|..... ....
T Consensus 30 ~~~g~~~~y~~~G~~-----~~~p~llllHG~~~~~~--~~~~~~-~~l~~~~~~vi~~Dl~G~G~S~~~------~~~~ 95 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGNS-----DAEDVFLCLHGEPTWSY--LYRKMI-PVFAESGARVIAPDFFGFGKSDKP------VDEE 95 (310)
T ss_dssp TCTTCEEEEEEEECT-----TCSCEEEECCCTTCCGG--GGTTTH-HHHHHTTCEEEEECCTTSTTSCEE------SCGG
T ss_pred CCCCEEEEEEEecCC-----CCCCEEEEECCCCCchH--HHHHHH-HHhhccCceEEEeeecCccccccc------cccc
Confidence 458999876544332 24689999999765443 344433 445557999999999998754321 1111
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
...++++...+..+++. ...+++.++|||+||.+++.++.++|++++++|...+
T Consensus 96 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~ 149 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNA 149 (310)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESC
T ss_pred cccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcC
Confidence 22455666666666654 2346799999999999999999999999999888755
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=98.88 E-value=4.1e-09 Score=111.14 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCCCCCCC-CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 432 NPCILYGYGGFAVSLQP-GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
.|.||++||........ .+......++. +||.|+++|.||.|...... .......+....+..+++. .+
T Consensus 30 G~~ivllHG~~~~~~~~~~~~~~l~~~~~-~g~~v~~~D~~G~G~S~~~~-------~~~~~~~~~~~~i~~li~~--l~ 99 (283)
T d2rhwa1 30 GETVIMLHGGGPGAGGWSNYYRNVGPFVD-AGYRVILKDSPGFNKSDAVV-------MDEQRGLVNARAVKGLMDA--LD 99 (283)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHH-TTCEEEEECCTTSTTSCCCC-------CSSCHHHHHHHHHHHHHHH--HT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHHHH-CCCEEEEEeCCCCccccccc-------ccccccchhhhhccccccc--cc
Confidence 36788899975433211 11122233444 69999999999987532211 1111122222233333333 23
Q ss_pred CCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|+|+||.+++.++.++|+.+.+++...+
T Consensus 100 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~ 134 (283)
T d2rhwa1 100 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGP 134 (283)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ccccccccccchHHHHHHHHHHhhhhcceEEEeCC
Confidence 46899999999999999999999999999888866
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.81 E-value=5.5e-08 Score=99.32 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=69.0
Q ss_pred cEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCC
Q psy1288 433 PCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSS 512 (1012)
Q Consensus 433 P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~ 512 (1012)
+.||++||..+... .|... ...|.++||.|+++|.||.|...... .....+.+....+..++.... ...
T Consensus 3 ~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~vi~~Dl~G~G~S~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~ 71 (258)
T d1xkla_ 3 KHFVLVHGACHGGW--SWYKL-KPLLEAAGHKVTALDLAASGTDLRKI-------EELRTLYDYTLPLMELMESLS-ADE 71 (258)
T ss_dssp CEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEECCCTTSTTCCCCG-------GGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CcEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEecCCCCCCCCCCC-------CCCcchHHHHHHHhhhhhccc-ccc
Confidence 46888999765443 45543 45676679999999999988542210 111223444444444444322 235
Q ss_pred cEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 513 RLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 513 ~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
++.++|+|+||.+++.++.++|+++...+...+
T Consensus 72 ~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~ 104 (258)
T d1xkla_ 72 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAA 104 (258)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cccccccchhHHHHHHHhhhhccccceEEEecc
Confidence 778899999999999999999999998887765
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=2.3e-08 Score=106.31 Aligned_cols=250 Identities=12% Similarity=0.036 Sum_probs=136.6
Q ss_pred eEEEEEECC-CCceEEEEEEEeCCCC-----CCCCCcEEEEEcCCCCCCCCCCcC--hhHHHHHHhCCeEEEEEcCCCCC
Q psy1288 403 TKQVFYPSK-DGTKIPMFILSRKGAQ-----LDGNNPCILYGYGGFAVSLQPGFS--VTKIVFLRDFNGIYAIPNIRGGG 474 (1012)
Q Consensus 403 ~~~v~~~s~-DG~~i~~~l~~p~~~~-----~~~~~P~vv~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~d~RG~g 474 (1012)
..++.+.|. -|..+.+.++.|+++. .++++|+|+++||..+... .|. .....++.+.|.+|+.++.-...
T Consensus 14 ~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~--~w~~~~~~~~~~~~~~~~vv~~~~~p~~ 91 (299)
T d1pv1a_ 14 LIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPD--NASEKAFWQFQADKYGFAIVFPDTSPRG 91 (299)
T ss_dssp EEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHH--HHHHHSCHHHHHHHHTCEEEECCSSCCS
T ss_pred EEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHH--HHHHhhhHHHHHHHcCCceecCCCcccc
Confidence 455666665 5889999999999863 3567999999999654321 221 12345566678888888642210
Q ss_pred -------------CCchhHHhhhhc--CCCcchHhHHHH--HHHHHHHc-------CCCCCCcEEEEecChHHHHHHHHH
Q psy1288 475 -------------EYGERWHDGGRL--LNKQNVFDDFQC--AAEYLIAS-------GYTQSSRLAIQGGSNGGLLTAACI 530 (1012)
Q Consensus 475 -------------~~g~~~~~~~~~--~~~~~~~~D~~a--~~~~l~~~-------~~~d~~~i~i~G~S~GG~l~~~~~ 530 (1012)
+.+..|+..... ..+...+.|++. ...++.+. ...++++.+|.|+||||+.++.++
T Consensus 92 ~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~a 171 (299)
T d1pv1a_ 92 DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGY 171 (299)
T ss_dssp TTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHH
T ss_pred cccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHH
Confidence 001111111000 000112333321 12222222 112346899999999999998887
Q ss_pred hh--CCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCcchhhhhhhhhhhcccccccc
Q psy1288 531 NQ--RPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPLTQVVHKVLDMLKFNKFTIGY 608 (1012)
Q Consensus 531 ~~--~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~plt~~~~~~~d~~~~~~~~~g~ 608 (1012)
.+ +|++|.++++.+| +.++ .... .... .
T Consensus 172 l~~~~p~~f~~~~s~s~---~~~~----------------------~~~~----------------~~~~-~-------- 201 (299)
T d1pv1a_ 172 LKGYSGKRYKSCSAFAP---IVNP----------------------SNVP----------------WGQK-A-------- 201 (299)
T ss_dssp HHTGGGTCCSEEEEESC---CCCS----------------------TTSH----------------HHHH-H--------
T ss_pred HHhcCCCceEEEeeccC---cCCc----------------------cccc----------------chhh-h--------
Confidence 54 5899999999888 2110 0000 0000 0
Q ss_pred ccccccCCCCChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChH-HHHHHHHHHHhhhccCCCCCCcEE
Q psy1288 609 FWESDYGSPANSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPV-HSLKFAATLQEKLRDYPHQTNPLL 687 (1012)
Q Consensus 609 ~~~~~~g~p~~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~-~s~~~~~~L~~~~~~~~~~~~~~~ 687 (1012)
+...+|... ..+..++|...++.. .+...|.+++.+|..|...... ....+.+.++++. -..+++
T Consensus 202 -~~~~~g~~~-----~~~~~~~~~~l~~~~---~~~~~~~i~~~~G~~D~~~~~~~~~~~f~~~~~~~g-----~~~~~~ 267 (299)
T d1pv1a_ 202 -FKGYLGEEK-----AQWEAYDPCLLIKNI---RHVGDDRILIHVGDSDPFLEEHLKPELLLEAVKATS-----WQDYVE 267 (299)
T ss_dssp -HHHHSCC---------CGGGCHHHHGGGS---CCCTTCCEEEECCTTCTTTTTTCCTHHHHHHHTTST-----TTTSEE
T ss_pred -hhhhcccch-----hhhhhcCHHHHHHHh---hccCCcceeEecCCCCcchhhhhcHHHHHHHHHhcC-----CCcceE
Confidence 001112111 112233333322210 1345666999999999865543 2455667776651 134578
Q ss_pred EEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 688 IRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 688 l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+...|+++|.+.- ....+.+.+.|+.+.|+.
T Consensus 268 ~~~~~G~~Hsw~y----W~~~i~~~l~f~a~~lgl 298 (299)
T d1pv1a_ 268 IKKVHGFDHSYYF----VSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp EECCTTCCSSHHH----HHHHHHHHHHHHHHHTTC
T ss_pred EEecCCCCcCHHH----HHHHHHHHHHHHHHhcCC
Confidence 8888888898521 124566778899888765
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=98.81 E-value=1.7e-07 Score=98.74 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=82.4
Q ss_pred EEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh
Q psy1288 404 KQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG 483 (1012)
Q Consensus 404 ~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~ 483 (1012)
+.-++.+.||.+|.+...-+++ .|.||++||..+... .|... ...++ +||.|+++|.||.|.....
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~~------g~pvvllHG~~~~~~--~w~~~-~~~l~-~~~~vi~~D~rG~G~S~~~---- 77 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNPN------GKPAVFIHGGPGGGI--SPHHR-QLFDP-ERYKVLLFDQRGCGRSRPH---- 77 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT------SEEEEEECCTTTCCC--CGGGG-GGSCT-TTEEEEEECCTTSTTCBST----
T ss_pred cCCEEEeCCCcEEEEEEecCCC------CCeEEEECCCCCccc--chHHH-HHHhh-cCCEEEEEeCCCccccccc----
Confidence 4455677899999887664332 356788899876544 34333 23455 5999999999998754221
Q ss_pred hhcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 484 GRLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 484 ~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.........++...+..++.. ....++.++|+|+||.++...+...|+++...+....
T Consensus 78 --~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~ 135 (313)
T d1wm1a_ 78 --ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGI 135 (313)
T ss_dssp --TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --ccccccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeeccc
Confidence 111122233444444444443 2456889999999999999999999999988887655
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=98.80 E-value=9.2e-09 Score=108.52 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=80.1
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNK 489 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~ 489 (1012)
+.||.+|++...-++ ..|.||++||...... .|... ...|. .||.|+.+|.||.|.... ...
T Consensus 13 ~~~g~~i~y~~~G~~------~~p~lvllHG~~~~~~--~~~~~-~~~L~-~~~~vi~~d~~G~G~S~~--------~~~ 74 (291)
T d1bn7a_ 13 EVLGERMHYVDVGPR------DGTPVLFLHGNPTSSY--LWRNI-IPHVA-PSHRCIAPDLIGMGKSDK--------PDL 74 (291)
T ss_dssp EETTEEEEEEEESCS------SSSCEEEECCTTCCGG--GGTTT-HHHHT-TTSCEEEECCTTSTTSCC--------CSC
T ss_pred EECCEEEEEEEeCCC------CCCeEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEEeCCCCccccc--------ccc
Confidence 348989987665332 2367888999765443 34443 35565 499999999999875421 111
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+++...+..+++. .+.+++.++|+|+||.+++.++.++|+.+++.+...+
T Consensus 75 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~ 128 (291)
T d1bn7a_ 75 DYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEF 128 (291)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEE
T ss_pred ccchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeecc
Confidence 23345555555555554 2446899999999999999999999999998877644
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=98.80 E-value=4.9e-08 Score=101.78 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCC
Q psy1288 431 NNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQ 510 (1012)
Q Consensus 431 ~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d 510 (1012)
..|.||++||...... .|... ...+.++||.|+++|.||.|..... .....++++...+..+++. ..
T Consensus 22 ~G~~ivllHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~S~~~--------~~~~~~~~~~~dl~~~l~~--l~ 88 (277)
T d1brta_ 22 TGQPVVLIHGFPLSGH--SWERQ-SAALLDAGYRVITYDRRGFGQSSQP--------TTGYDYDTFAADLNTVLET--LD 88 (277)
T ss_dssp SSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HT
T ss_pred cCCeEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEEeCCCCCccccc--------ccccchhhhhhhhhhhhhc--cC
Confidence 3467889999765432 34443 3445557999999999998754211 1112344444444444443 23
Q ss_pred CCcEEEEecChHHH-HHHHHHhhCCCceeEEEEccC
Q psy1288 511 SSRLAIQGGSNGGL-LTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~-l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.+++.++|||+||. ++..++..+|+++++++...+
T Consensus 89 ~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~ 124 (277)
T d1brta_ 89 LQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLAS 124 (277)
T ss_dssp CCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred cccccccccccchhhhhHHHHHhhhcccceEEEecC
Confidence 46799999999964 455566777999999887765
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=98.77 E-value=5.7e-08 Score=102.21 Aligned_cols=116 Identities=16% Similarity=0.073 Sum_probs=76.7
Q ss_pred CCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcc
Q psy1288 412 DGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQN 491 (1012)
Q Consensus 412 DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~ 491 (1012)
||.+|.+... |..|.||++||..+... .|.. ....|++ +|.|+++|.||.|....... ......
T Consensus 16 ~~~~l~y~~~--------G~gp~vv~lHG~~~~~~--~~~~-~~~~l~~-~~~vi~~D~~G~G~s~~~~~----~~~~~~ 79 (293)
T d1ehya_ 16 PDVKIHYVRE--------GAGPTLLLLHGWPGFWW--EWSK-VIGPLAE-HYDVIVPDLRGFGDSEKPDL----NDLSKY 79 (293)
T ss_dssp SSCEEEEEEE--------ECSSEEEEECCSSCCGG--GGHH-HHHHHHT-TSEEEEECCTTSTTSCCCCT----TCGGGG
T ss_pred CCEEEEEEEE--------CCCCeEEEECCCCCCHH--HHHH-HHHHHhc-CCEEEEecCCcccCCccccc----cccccc
Confidence 5778876442 23478999999765432 3443 3456664 99999999999874322100 001112
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 492 VFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 492 ~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++++...+..+++. ...+++.++|+|+||.+++.++.++|+++.+++...+
T Consensus 80 ~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 131 (293)
T d1ehya_ 80 SLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 131 (293)
T ss_dssp CHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred cchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeec
Confidence 334444444444443 2346799999999999999999999999999888765
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=98.75 E-value=6.7e-09 Score=110.84 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=81.4
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccCCCccccCcceeeeecccccccCcccccccCCCCcccccCCCCc
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVGNPEISDCGRWLIVHTMKDCKNNMFHFCDLDTIPDRKIEGKLPL 588 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~pl 588 (1012)
+||+||+|+|+|+||+|+..++..+|++|++++.....+ ...+ .... ..
T Consensus 8 iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~-p~~c------------a~~~------------------~~ 56 (318)
T d2d81a1 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGG-PYDC------------ARNQ------------------YY 56 (318)
T ss_dssp EEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCC-CTTT------------TSSS------------------CG
T ss_pred CCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccC-chhh------------hccc------------------ch
Confidence 789999999999999999999999999997544332200 0000 0000 00
Q ss_pred chhhhhhhhhhhccccccccccccccCCCC--ChHHHHHHHcCCcccCCCCCCcccCCCCCcEEEEeeCCCCCCChHHHH
Q psy1288 589 TQVVHKVLDMLKFNKFTIGYFWESDYGSPA--NSSQFEYLLGYSPLHNIQGPDELKGKQYPATLLMTADHDDRVSPVHSL 666 (1012)
Q Consensus 589 t~~~~~~~d~~~~~~~~~g~~~~~~~g~p~--~~~~~~~~~~~sP~~~~~~p~~~~~~~~P~vLiihG~~D~~v~~~~s~ 666 (1012)
.+. ...+.+. .+...........+.... +...|++|++||..|..|++.++.
T Consensus 57 -------~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~pvll~hG~~D~~Vpp~~s~ 110 (318)
T d2d81a1 57 -------TSC-------------MYNGYPSITTPTANMKSWSGNQIASVA------NLGQRKIYMWTGSSDTTVGPNVMN 110 (318)
T ss_dssp -------GGG-------------STTCCCCCHHHHHHHHHHBTTTBCCGG------GGGGCEEEEEEETTCCSSCHHHHH
T ss_pred -------HHH-------------hhcCCCCCcChhHHHHHHhhcCCcchh------ccCCCCEEEEecCCCCCcCHHHHH
Confidence 000 0000010 112222233333333333 344456999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCC
Q psy1288 667 KFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 700 (1012)
Q Consensus 667 ~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~ 700 (1012)
+++++|++. ..+..++++.++++||++..
T Consensus 111 ~l~~~l~~~-----~~~~~v~yv~~~gagH~fpT 139 (318)
T d2d81a1 111 QLKAQLGNF-----DNSANVSYVTTTGAVHTFPT 139 (318)
T ss_dssp HHHHHHTTT-----SCGGGEEEEEETTCCSSEEE
T ss_pred HHHHHHHcC-----cCCCceEEEEeCCCCCCCCC
Confidence 999998875 11457899999999999854
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=98.74 E-value=9.2e-10 Score=115.38 Aligned_cols=176 Identities=6% Similarity=-0.115 Sum_probs=103.4
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+...|.++++|||.= +..-.....+.++.... .+.+++.++.+...... ....+++..+.+.|+.+...
T Consensus 59 ~~~~P~vv~iHGG~w-~~g~~~~~~~~a~~l~~-------~G~~Vv~~~YRl~p~~~--~p~~~~d~~~a~~~~~~~~~- 127 (261)
T d2pbla1 59 GTPVGLFVFVHGGYW-MAFDKSSWSHLAVGALS-------KGWAVAMPSYELCPEVR--ISEITQQISQAVTAAAKEID- 127 (261)
T ss_dssp SSCSEEEEEECCSTT-TSCCGGGCGGGGHHHHH-------TTEEEEEECCCCTTTSC--HHHHHHHHHHHHHHHHHHSC-
T ss_pred CCCCCeEEEECCCCC-ccCChhHhhhHHHHHhc-------CCceeeccccccccccc--CchhHHHHHHHHHHHHhccc-
Confidence 346788999999820 11111111222333333 46777777777655432 23457888888889887742
Q ss_pred CCCCCCCCCCccCCccccccCccceeeeccccccccchhh-----hcccccCCCCCC-CCCCCc-ccCCCCCChhhhhHh
Q psy1288 723 LQRYPETPNKADGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFT-IGYFWE-SDYGSPANSSQFEYL 795 (1012)
Q Consensus 723 ~~~~~d~~~~~GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~-~~~~~~-~~~g~~~~~~~~~~~ 795 (1012)
+...+.|.|.| ++.+++.++........ +++.+....... ....+. ..++ .++ +..
T Consensus 128 -----~rI~l~G~SaG-------G~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~ 190 (261)
T d2pbla1 128 -----GPIVLAGHSAG-------GHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSMNEKFK--MDA---DAA 190 (261)
T ss_dssp -----SCEEEEEETHH-------HHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGSTTHHHHC--CCH---HHH
T ss_pred -----CceEEEEcchH-------HHHHHHHhcCcccccchhhchhhhhccccccccchhhhhhhccccc--CCH---HHH
Confidence 12223388999 65554444333222211 222221111100 000111 1111 122 335
Q ss_pred HcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q psy1288 796 LGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGH 865 (1012)
Q Consensus 796 ~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH 865 (1012)
...||+.+++ +..+|+||+||++|+.|+..||.+|+++|+.. ++++|+++|
T Consensus 191 ~~~SP~~~~~-------~~~~P~li~~G~~D~~~~~~qs~~~~~~l~~~------------~~~~~~~~H 241 (261)
T d2pbla1 191 IAESPVEMQN-------RYDAKVTVWVGGAERPAFLDQAIWLVEAWDAD------------HVIAFEKHH 241 (261)
T ss_dssp HHTCGGGCCC-------CCSCEEEEEEETTSCHHHHHHHHHHHHHHTCE------------EEEETTCCT
T ss_pred HHhCchhhcc-------cCCCeEEEEEecCCCchHHHHHHHHHHHhCCC------------ceEeCCCCc
Confidence 6779999999 89999999999999999999999999998654 447899999
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=3.3e-08 Score=102.34 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||...... .|... ...|+ .||.|+++|.||.|... ......+.|+.. .+... ..
T Consensus 11 ~~~lvllHG~~~~~~--~~~~~-~~~L~-~~~~vi~~D~~G~G~S~---------~~~~~~~~d~~~---~~~~~---~~ 71 (256)
T d1m33a_ 11 NVHLVLLHGWGLNAE--VWRCI-DEELS-SHFTLHLVDLPGFGRSR---------GFGALSLADMAE---AVLQQ---AP 71 (256)
T ss_dssp SSEEEEECCTTCCGG--GGGGT-HHHHH-TTSEEEEECCTTSTTCC---------SCCCCCHHHHHH---HHHTT---SC
T ss_pred CCeEEEECCCCCCHH--HHHHH-HHHHh-CCCEEEEEeCCCCCCcc---------cccccccccccc---ccccc---cc
Confidence 366778999754432 34443 45666 48999999999987431 112223444433 23332 24
Q ss_pred CcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|+|+||.+++.++.++|+.++.++...+
T Consensus 72 ~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~ 105 (256)
T d1m33a_ 72 DKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 105 (256)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred cceeeeecccchHHHHHHHHhCCcccceeeeeec
Confidence 6788999999999999999999999988777655
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=98.69 E-value=1.8e-08 Score=103.29 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCCCcE
Q psy1288 435 ILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQSSRL 514 (1012)
Q Consensus 435 vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i 514 (1012)
.|++||..... ..|... ...|.++||.|+++|.||.|.....- .....+++....+..++... ...+++
T Consensus 5 ~vliHG~~~~~--~~w~~~-~~~L~~~g~~Via~Dl~G~G~S~~~~-------~~~~~~~~~~~~l~~~~~~~-~~~~~~ 73 (256)
T d3c70a1 5 FVLIHTICHGA--WIWHKL-KPLLEALGHKVTALDLAASGVDPRQI-------EEIGSFDEYSEPLLTFLEAL-PPGEKV 73 (256)
T ss_dssp EEEECCTTCCG--GGGTTH-HHHHHHTTCEEEEECCTTSTTCSCCG-------GGCCSHHHHTHHHHHHHHHS-CTTCCE
T ss_pred EEEeCCCCCCH--HHHHHH-HHHHHhCCCEEEEEcCCCCCCCCCCC-------CCCCCHHHHHHHhhhhhhhh-ccccce
Confidence 57799976543 245443 45676679999999999987542210 11123445555454443332 235678
Q ss_pred EEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 515 AIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 515 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++|+|+||.+++.++.++|++++++|...+
T Consensus 74 ~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 104 (256)
T d3c70a1 74 ILVGESCGGLNIAIAADKYCEKIAAAVFHNS 104 (256)
T ss_dssp EEEEETTHHHHHHHHHHHHGGGEEEEEEESC
T ss_pred eecccchHHHHHHHHhhcCchhhhhhheecc
Confidence 8999999999999999999999999887755
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.67 E-value=1.6e-09 Score=117.02 Aligned_cols=184 Identities=11% Similarity=0.006 Sum_probs=106.8
Q ss_pred CCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCCCC
Q psy1288 645 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPVLQ 724 (1012)
Q Consensus 645 ~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~~~ 724 (1012)
+.|.||.+|||.=..........+..++.+. .+.+++.++.+.+... .+...+++..+.+.|+.+.....
T Consensus 78 ~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~-------~g~~Vv~v~Yrlap~~--~~p~~~~d~~~a~~~~~~~~~~~- 147 (311)
T d1jjia_ 78 DSPVLVYYHGGGFVICSIESHDALCRRIARL-------SNSTVVSVDYRLAPEH--KFPAAVYDCYDATKWVAENAEEL- 147 (311)
T ss_dssp SEEEEEEECCSTTTSCCTGGGHHHHHHHHHH-------HTSEEEEEECCCTTTS--CTTHHHHHHHHHHHHHHHTHHHH-
T ss_pred CceEEEEEcCCCCccCChhhhhhhhhhhhhc-------CCcEEEEecccccccc--ccchhhhhhhhhhhHHHHhHHHh-
Confidence 4588999999821111223333455556554 4667777777765433 22345678888888998875432
Q ss_pred CCCCCCCCc--cCCccccccCccceeeecc-cc---ccccch-----hhhcccccCCCCCCCCCCCcccCCCC---CChh
Q psy1288 725 RYPETPNKA--DGSENVRNQDQKLYYHYLG-TD---QKDDIL-----IAEVLDMLKFNKFTIGYFWESDYGSP---ANSS 790 (1012)
Q Consensus 725 ~~~d~~~~~--GgS~g~~~~~~~~~~~~~~-~t---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~ 790 (1012)
..|+.+++ |.|.| ++.+++. +. ...... ..+.+|+.... ....+++.. .+..
T Consensus 148 -~~d~~ri~v~G~SaG-------G~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~------~~~~~~~~~~~~~~~~ 213 (311)
T d1jjia_ 148 -RIDPSKIFVGGDSAG-------GNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPT------PSLLEFGEGLWILDQK 213 (311)
T ss_dssp -TEEEEEEEEEEETHH-------HHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCC------HHHHHTSSSCSSCCHH
T ss_pred -CcChhHEEEEeeecC-------CcceeechhhhhhccccccceeeeecceeeeccCc------ccccccccccccccHH
Confidence 23344555 77888 4433221 10 000000 11222221110 001111110 0000
Q ss_pred -------------hhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEE
Q psy1288 791 -------------QFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLI 857 (1012)
Q Consensus 791 -------------~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 857 (1012)
....-...||+.... +..+|+||+||++|..++ |+++|+++||+.|+ ++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~-------~~~pP~li~~g~~D~l~d--~~~~~~~~L~~~Gv-------~v~~ 277 (311)
T d1jjia_ 214 IMSWFSEQYFSREEDKFNPLASVIFADL-------ENLPPALIITAEYDPLRD--EGEVFGQMLRRAGV-------EASI 277 (311)
T ss_dssp HHHHHHHHHCSSGGGGGCTTTSGGGSCC-------TTCCCEEEEEEEECTTHH--HHHHHHHHHHHTTC-------CEEE
T ss_pred Hhhhhhhhcccccccccccccchhhccc-------ccCCCEEEEEcCCCCChH--HHHHHHHHHHHCCC-------CEEE
Confidence 001112358888776 777999999999997765 99999999999999 9999
Q ss_pred EEeCCCCCCCC
Q psy1288 858 RIETKAGHGGG 868 (1012)
Q Consensus 858 ~~~~~~gH~~~ 868 (1012)
++|++++|||.
T Consensus 278 ~~~~g~~H~F~ 288 (311)
T d1jjia_ 278 VRYRGVLHGFI 288 (311)
T ss_dssp EEEEEEETTGG
T ss_pred EEECCCCCccc
Confidence 99999999985
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=98.66 E-value=1.2e-09 Score=118.35 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=52.7
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
.+.+..+||+.+++ ++++|+||+||++|..||+.++..+|++| +. |.++++||++||+....
T Consensus 246 ~~~~~~~d~~~~a~-------~i~~P~Lv~~G~~D~~vp~~~~~~~~~~~---~~-------~~~l~~~p~~~H~~~~~ 307 (322)
T d1vlqa_ 246 FRTLSYFDGVNFAA-------RAKIPALFSVGLMDNICPPSTVFAAYNYY---AG-------PKEIRIYPYNNHEGGGS 307 (322)
T ss_dssp HHHHHTTCHHHHHT-------TCCSCEEEEEETTCSSSCHHHHHHHHHHC---CS-------SEEEEEETTCCTTTTHH
T ss_pred HHHhhhhhHHHHHh-------cCCCCEEEEEeCCCCCcCHHHHHHHHHHC---CC-------CeEEEEECCCCCCCccc
Confidence 45667789999999 99999999999999999998877666544 55 89999999999987643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.65 E-value=1.8e-06 Score=93.11 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCC-----CCc
Q psy1288 107 KYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS-----GSD 181 (1012)
Q Consensus 107 ~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~-----G~~ 181 (1012)
...+|+|||.++|..-...+.....+|..+...++....++. +. ...++|||||++|++..... |..
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~------g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~ 76 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG------GF--LPNPVVADDGSFIAHASTVFSRIARGER 76 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE------CS--SCEEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC------CC--CCceEEcCCCCEEEEEeCCCccccccCC
Confidence 355789999999655333333456899999877754333331 21 22589999999998765432 222
Q ss_pred eEEEEEEECCCCceeceeec-c-------eeeeeeEEeeCCCeEEEEe
Q psy1288 182 WTSMHFKDVATGKEYPEVLH-R-------LKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 182 ~~~L~v~dl~tg~~~~~t~~-~-------~~~~~~~WSpDG~~l~y~~ 221 (1012)
...|+++|+++++.+..... . .....++|+|||+.+++..
T Consensus 77 d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~ 124 (355)
T d2bbkh_ 77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124 (355)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEec
Confidence 34799999999987643211 1 1124579999999987764
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=98.65 E-value=2.4e-07 Score=96.60 Aligned_cols=101 Identities=12% Similarity=0.020 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|.||++||...... .|......++. +||.|+++|.||.|..... ....+++++...+..+++. .+.
T Consensus 23 g~~illlHG~~~~~~--~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~~--------~~~~~~~~~~~di~~~i~~--l~~ 89 (279)
T d1hkha_ 23 GQPVVLIHGYPLDGH--SWERQTRELLA-QGYRVITYDRRGFGGSSKV--------NTGYDYDTFAADLHTVLET--LDL 89 (279)
T ss_dssp SEEEEEECCTTCCGG--GGHHHHHHHHH-TTEEEEEECCTTSTTSCCC--------SSCCSHHHHHHHHHHHHHH--HTC
T ss_pred CCeEEEECCCCCCHH--HHHHHHHHHHH-CCCEEEEEechhhCCcccc--------ccccchhhhhhhhhhhhhh--cCc
Confidence 467888999765443 35444333444 6999999999998754211 1123445554444444443 234
Q ss_pred CcEEEEecChHH-HHHHHHHhhCCCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGG-LLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG-~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++.++|||+|| .++..++..+|+++..++...+
T Consensus 90 ~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~ 124 (279)
T d1hkha_ 90 RDVVLVGFSMGTGELARYVARYGHERVAKLAFLAS 124 (279)
T ss_dssp CSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESC
T ss_pred CccccccccccccchhhhhccccccccceeEEeec
Confidence 689999999996 5555566777999988887755
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=98.62 E-value=4.4e-09 Score=113.17 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=42.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
..-+|+||+||++|..+ .|+++|+++|+++|+ ++++++||+++|||.
T Consensus 237 ~~~Pp~li~~g~~D~l~--~~~~~~~~~L~~~G~-------~v~~~~~~g~~Hgf~ 283 (308)
T d1u4na_ 237 SGLPPAYIATAQYDPLR--DVGKLYAEALNKAGV-------KVEIENFEDLIHGFA 283 (308)
T ss_dssp TTCCCEEEEEEEECTTH--HHHHHHHHHHHHTTC-------CEEEEEEEEEETTGG
T ss_pred cCCCCeeEEecCcCCch--HHHHHHHHHHHHCCC-------CEEEEEECCCCEeCc
Confidence 34479999999999776 489999999999998 999999999999984
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=7e-09 Score=111.44 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=52.3
Q ss_pred hhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 792 FEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 792 ~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
+..+..++++.+++ +|++|+||+||++|..||+.++.+++++|. . +.+++++|++||++..
T Consensus 242 ~~~~~~~~~~~~~~-------~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~---~-------~~~l~~~~~~gH~~~~ 302 (318)
T d1l7aa_ 242 MKTLSYFDIMNLAD-------RVKVPVLMSIGLIDKVTPPSTVFAAYNHLE---T-------KKELKVYRYFGHEYIP 302 (318)
T ss_dssp HHHHHTTCHHHHGG-------GCCSCEEEEEETTCSSSCHHHHHHHHHHCC---S-------SEEEEEETTCCSSCCH
T ss_pred cccccccccccccc-------cCCCCEEEEEECCCCCcCHHHHHHHHHHcC---C-------CcEEEEECCCCCCCcH
Confidence 44556778888888 999999999999999999999999988763 3 8899999999998753
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=98.56 E-value=1.6e-07 Score=100.16 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=49.1
Q ss_pred CCCCCcEEEEeeCCCCCCChH-----HHHHHHHHHHhhhccCCCCCCcEEEEEeCC-----CCCCCCCccccchhhhhHH
Q psy1288 643 GKQYPATLLMTADHDDRVSPV-----HSLKFAATLQEKLRDYPHQTNPLLIRIETK-----AGHGGGKPTTKQFPLTIPV 712 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~-----~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~-----~gHg~~~~~~~~~~~~~~~ 712 (1012)
..+.| +|++||+.|..+|.. .+..+...|+++ +..+++..+|. +||....+.+. .+....+
T Consensus 239 ~~~~P-~Lii~G~~D~~~p~~~~~~~~~~~~~~~l~~~-------g~~~~~~~lp~~gi~G~gH~~~~e~~~-~~va~~i 309 (318)
T d1qlwa_ 239 LTSIP-VLVVFGDHIEEFPRWAPRLKACHAFIDALNAA-------GGKGQLMSLPALGVHGNSHMMMQDRNN-LQVADLI 309 (318)
T ss_dssp GTTSC-EEEEECSSCTTCTTTHHHHHHHHHHHHHHHHT-------TCCEEEEEGGGGTCCCCCTTGGGSTTH-HHHHHHH
T ss_pred hccCC-EEEEecCcCcccChhhhHHHHHHHHHHHHHHh-------CCCcEEEEecccccCCCcCccccCcCH-HHHHHHH
Confidence 45778 999999999999854 344566777777 88999998774 56876443321 2444567
Q ss_pred HHHHHHh
Q psy1288 713 IYFYLTS 719 (1012)
Q Consensus 713 ~~fl~~~ 719 (1012)
.+||+++
T Consensus 310 ~~wL~~~ 316 (318)
T d1qlwa_ 310 LDWIGRN 316 (318)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 7899886
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=3.1e-08 Score=101.62 Aligned_cols=110 Identities=14% Similarity=-0.059 Sum_probs=74.2
Q ss_pred cCCccccccCccceeeeccccccccchhhhcccccCCCCCCCCCCCcccCCCCCChhhhhHhHcCCCCCCCCCCCCCCCC
Q psy1288 734 DGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGK 813 (1012)
Q Consensus 734 GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~ 813 (1012)
|.|.| ++.++..+...|+...+ +..+ ... ......+.+....+ ....+...+|+.+.. ..
T Consensus 111 G~S~G-------g~~a~~~~~~~p~~~~~-~~~~-~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~ 170 (238)
T d1ufoa_ 111 GGSLG-------AFVAHLLLAEGFRPRGV-LAFI-GSG----FPMKLPQGQVVEDP-GVLALYQAPPATRGE------AY 170 (238)
T ss_dssp EETHH-------HHHHHHHHHTTCCCSCE-EEES-CCS----SCCCCCTTCCCCCH-HHHHHHHSCGGGCGG------GG
T ss_pred Eeccc-------HHHHHHHHhcCcchhhe-eeee-eec----cccccccccccccc-cccchhhhhhhhhhh------hh
Confidence 88888 66666655555543322 2111 110 01111222333333 344556788887776 25
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
..+|+||+||++|..||+.++.+++++||+.+.+. .+.++++++.||.++
T Consensus 171 ~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~-----~~~~~~~~g~gH~~~ 220 (238)
T d1ufoa_ 171 GGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEG-----RLARFVEEGAGHTLT 220 (238)
T ss_dssp TTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTC-----CEEEEEETTCCSSCC
T ss_pred cCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCc-----eEEEEEECCCCCccC
Confidence 67899999999999999999999999999998732 588999999999885
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.55 E-value=2.1e-05 Score=85.28 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=70.2
Q ss_pred CCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCC-----Cc
Q psy1288 107 KYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSG-----SD 181 (1012)
Q Consensus 107 ~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G-----~~ 181 (1012)
...+++|||+++|............+|..+...++...-++. +. ...+.|||||++|++.....+ ..
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~------~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG------GF--LPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC------CC--CccEEEcCCCCEEEEEeecCCccccccc
Confidence 445678999999876433323346799998776654433331 11 225899999999999865432 23
Q ss_pred eEEEEEEECCCCceeceeecce--------eeeeeEEeeCCCeEEEEe
Q psy1288 182 WTSMHFKDVATGKEYPEVLHRL--------KFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 182 ~~~L~v~dl~tg~~~~~t~~~~--------~~~~~~WSpDG~~l~y~~ 221 (1012)
...|+++|+++++.+....... ....+.|+|||+.+++..
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~ 143 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEE
Confidence 3479999999998764321111 124578999999887664
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.54 E-value=2.1e-05 Score=81.91 Aligned_cols=236 Identities=12% Similarity=0.093 Sum_probs=133.6
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
..+|||+++|..-... ..|.+.+...++....+. .........+++||++++.....++ .+.+++
T Consensus 38 a~spdG~~l~v~~~~~----~~i~v~d~~t~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 102 (301)
T d1l0qa2 38 VISPDGTKVYVANAHS----NDVSIIDTATNNVIATVP-------AGSSPQGVAVSPDGKQVYVTNMASS----TLSVID 102 (301)
T ss_dssp EECTTSSEEEEEEGGG----TEEEEEETTTTEEEEEEE-------CSSSEEEEEECTTSSEEEEEETTTT----EEEEEE
T ss_pred EEeCCCCEEEEEECCC----CEEEEEECCCCceeeeee-------ccccccccccccccccccccccccc----eeeecc
Confidence 3458999887543222 346666776554433333 1123457889999999887655432 688899
Q ss_pred CCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCC
Q psy1288 190 VATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDA 269 (1012)
Q Consensus 190 l~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~ 269 (1012)
..+++...............|+|||+.+++...........+.. ......... .........++++++.+++.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 179 (301)
T d1l0qa2 103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTVS-VGRSPKGIAVTPDGTKVYVANFDS- 179 (301)
T ss_dssp TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEE-CCSSEEEEEECTTSSEEEEEETTT-
T ss_pred cccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeecc-ccceeeecc-cCCCceEEEeeccccceeeecccc-
Confidence 99887654333333346789999999988776432100000000 000100000 001222345788999888876532
Q ss_pred CCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeeccc
Q psy1288 270 PNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGK 349 (1012)
Q Consensus 270 ~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~s 349 (1012)
..+...+..... ........ ..........+++.+++.........++++|+.+++....++.. ..+..++++
T Consensus 180 --~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~s 252 (301)
T d1l0qa2 180 --MSISVIDTVTNS---VIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVT 252 (301)
T ss_dssp --TEEEEEETTTTE---EEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEEC
T ss_pred --ccccccccccee---eeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEe
Confidence 234444443322 11222111 12222223345567777666555678999999888766655543 234578899
Q ss_pred ccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 350 KKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 350 pdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
|||+.|+++... -..|.++|+
T Consensus 253 pdg~~l~va~~~---~~~i~v~D~ 273 (301)
T d1l0qa2 253 PDGKKVYVALSF---CNTVSVIDT 273 (301)
T ss_dssp TTSSEEEEEETT---TTEEEEEET
T ss_pred CCCCEEEEEECC---CCeEEEEEC
Confidence 999988776543 247889999
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=98.54 E-value=8.2e-07 Score=90.57 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=66.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
....|+||++||..+... .|... ...|.+.||.|+++|.||.|........ ...+.......+.....
T Consensus 13 ~~~~P~ivllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~Dl~G~G~s~~~~~~---------~~~~~~~~~~~~~~~~~ 80 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGSGA--DWQPV-LSHLARTQCAALTLDLPGHGTNPERHCD---------NFAEAVEMIEQTVQAHV 80 (264)
T ss_dssp BTTBCEEEEECCTTCCGG--GGHHH-HHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEeCCCCCCHH--HHHHH-HHHHHhCCCEEEEEeccccccccccccc---------ccchhhhhhhhcccccc
Confidence 345689999999765432 45443 4566667999999999998754221110 01112222222333334
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEc
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQ 543 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 543 (1012)
....++.++|||+||.++..++.++|+.....+..
T Consensus 81 ~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~ 115 (264)
T d1r3da_ 81 TSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGA 115 (264)
T ss_dssp CTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEE
T ss_pred cccCceeeeeecchHHHHHHHHHhCchhccccccc
Confidence 45678999999999999999999999877665544
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=98.49 E-value=4.7e-08 Score=97.72 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=45.0
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
...+|++++||++|++||+.++.+++++|+.+|+ +++++.||+ ||+++.
T Consensus 140 ~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~-------~~~~~~~~g-gH~~~~ 188 (202)
T d2h1ia1 140 LAGKSVFIAAGTNDPICSSAESEELKVLLENANA-------NVTMHWENR-GHQLTM 188 (202)
T ss_dssp CTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTC-------EEEEEEESS-TTSCCH
T ss_pred cccchhhcccccCCCccCHHHHHHHHHHHHHCCC-------CEEEEEECC-CCcCCH
Confidence 4559999999999999999999999999999998 999999986 899863
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.46 E-value=3.7e-06 Score=91.87 Aligned_cols=108 Identities=10% Similarity=-0.034 Sum_probs=73.6
Q ss_pred CCCCCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC-----CCCc
Q psy1288 107 KYSSPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS-----SGSD 181 (1012)
Q Consensus 107 ~~s~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~-----~G~~ 181 (1012)
....|.++|+..|........+...||..+...++....+.. +. ...+.|||||++|++.... .|..
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~------~~--~~~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------AF--LSLAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------CT--TCEEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC------CC--CCcceECCCCCEEEEEcccCcccccccc
Confidence 344677899987766544333457899999877765554431 11 2358999999999997653 2445
Q ss_pred eEEEEEEECCCCceecee-ec-------ceeeeeeEEeeCCCeEEEEec
Q psy1288 182 WTSMHFKDVATGKEYPEV-LH-------RLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 182 ~~~L~v~dl~tg~~~~~t-~~-------~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
...|+++|+++++..... .. ......++|||||++|++...
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~ 143 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC
Confidence 568999999999875422 11 111246899999999987753
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=98.46 E-value=2.4e-08 Score=107.81 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=42.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+|+||+||++|. ...|+++|+++|++.|+ ++++++||+++|||.
T Consensus 246 ~~~pp~li~~g~~D~--l~~~~~~~~~~L~~~G~-------~v~~~~~~g~~H~f~ 292 (317)
T d1lzla_ 246 TGLPPTYLSTMELDP--LRDEGIEYALRLLQAGV-------SVELHSFPGTFHGSA 292 (317)
T ss_dssp TTCCCEEEEEETTCT--THHHHHHHHHHHHHTTC-------CEEEEEETTCCTTGG
T ss_pred cCCCCeEEEECCCCC--CHHHHHHHHHHHHHCCC-------CEEEEEECcCccCCc
Confidence 456899999999995 45699999999999999 999999999999985
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.42 E-value=3.3e-08 Score=99.01 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=45.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
...+|++|+||++|++||+.++++++++|++.|+ +++|++|++ ||++..
T Consensus 141 ~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~-------~v~~~~~~g-gH~~~~ 189 (203)
T d2r8ba1 141 KPTRRVLITAGERDPICPVQLTKALEESLKAQGG-------TVETVWHPG-GHEIRS 189 (203)
T ss_dssp CTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSS-------EEEEEEESS-CSSCCH
T ss_pred cccchhhccccCCCCcccHHHHHHHHHHHHHCCC-------CEEEEEECC-CCcCCH
Confidence 4559999999999999999999999999999999 999999987 899864
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=2.4e-08 Score=104.32 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=45.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++.+|+||+||++|+.||+.|+++|+++|++.|+ |++++++++.+|..
T Consensus 200 ~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~-------~~~~~~~~~~~H~~ 247 (263)
T d1vkha_ 200 RFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQL-------SFKLYLDDLGLHND 247 (263)
T ss_dssp HHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTC-------CEEEEEECCCSGGG
T ss_pred ccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCC-------CEEEEEECCCCchh
Confidence 5669999999999999999999999999999999 99999999999964
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=98.38 E-value=1.2e-07 Score=97.20 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=43.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
++++|+|++||++|++||..+.++++++++ .+. ++++++||+++|||..+
T Consensus 158 ~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~~~-------~~~~~~y~ga~HgF~~~ 207 (233)
T d1dina_ 158 EVKHPALFHMGGQDHFVPAPSRQLITEGFG-ANP-------LLQVHWYEEAGHSFART 207 (233)
T ss_dssp GCCSCEEEEEETTCTTSCHHHHHHHHHHHT-TCT-------TEEEEEETTCCTTTTCT
T ss_pred ccCCcceeeecccccCCCHHHHHHHHHHHh-cCC-------CEEEEEECCCCcCCCCC
Confidence 556999999999999999988888877665 455 89999999999999754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.36 E-value=0.00017 Score=74.64 Aligned_cols=229 Identities=12% Similarity=0.088 Sum_probs=121.8
Q ss_pred EEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec
Q psy1288 118 YFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP 197 (1012)
Q Consensus 118 ~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~ 197 (1012)
++|+...++ ..|.+.+...++...-+... .....+++||||++|+.+...++ .|.++|+++++...
T Consensus 3 ~~yV~~~~~---~~v~v~D~~t~~~~~~i~~g-------~~p~~va~spdG~~l~v~~~~~~----~i~v~d~~t~~~~~ 68 (301)
T d1l0qa2 3 FAYIANSES---DNISVIDVTSNKVTATIPVG-------SNPMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIA 68 (301)
T ss_dssp EEEEEETTT---TEEEEEETTTTEEEEEEECS-------SSEEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEE
T ss_pred EEEEEECCC---CEEEEEECCCCeEEEEEECC-------CCceEEEEeCCCCEEEEEECCCC----EEEEEECCCCceee
Confidence 566655432 24666677666544333311 12456899999999976654433 79999999998765
Q ss_pred eeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEE
Q psy1288 198 EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITI 277 (1012)
Q Consensus 198 ~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~ 277 (1012)
..........+.|++||+.++............+.. ..+...... .........+++||+.+++....+ ..+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~---~~~~~~ 143 (301)
T d1l0qa2 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGD---KTVSVI 143 (301)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTT---TEEEEE
T ss_pred eeeccccccccccccccccccccccccceeeecccc-cceeeeecc-ccccceEEEeecCCCeeeeeeccc---cceeee
Confidence 332333346789999999887765432100000000 000000000 001222345889999998887543 345666
Q ss_pred eCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEE
Q psy1288 278 DFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFY 357 (1012)
Q Consensus 278 dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~ 357 (1012)
+..+.. ....+... ..........+++.+++..... ..+.++.....+....+..+ .......++++++.+++
T Consensus 144 ~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v 216 (301)
T d1l0qa2 144 NTVTKA---VINTVSVG-RSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYV 216 (301)
T ss_dssp ETTTTE---EEEEEECC-SSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEE
T ss_pred eccccc---eeeecccC-CCceEEEeeccccceeeecccc--cccccccccceeeeeccccc-CCcceeecccccccccc
Confidence 665543 12222221 1121222223435555544332 33455555444433333333 23446678899998876
Q ss_pred EecCCCCCcEEEEEeC
Q psy1288 358 SFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 358 ~~ss~~~p~~l~~~d~ 373 (1012)
.... .....++++|+
T Consensus 217 ~~~~-~~~~~v~v~D~ 231 (301)
T d1l0qa2 217 TNVD-KYFNTVSMIDT 231 (301)
T ss_dssp EEEC-SSCCEEEEEET
T ss_pred cccc-ceeeeeeeeec
Confidence 6433 23457899998
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=98.33 E-value=1.3e-07 Score=98.78 Aligned_cols=164 Identities=10% Similarity=0.001 Sum_probs=99.6
Q ss_pred CCCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCccccchhhhhHHHHHHHHhCCC
Q psy1288 643 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTKQFPLTIPVIYFYLTSGPV 722 (1012)
Q Consensus 643 ~~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~~~~~~~~~~~~~fl~~~l~~ 722 (1012)
+.++|.|+++||..-.. ......+...+. .+++++.+...+.... ......++.+.++++......
T Consensus 49 ~g~~P~Vv~~HG~~g~~----~~~~~~a~~lA~-------~Gy~V~~~d~~~~~~~---~~~~~~d~~~~~~~l~~~~~~ 114 (260)
T d1jfra_ 49 DGTFGAVVISPGFTAYQ----SSIAWLGPRLAS-------QGFVVFTIDTNTTLDQ---PDSRGRQLLSALDYLTQRSSV 114 (260)
T ss_dssp TCCEEEEEEECCTTCCG----GGTTTHHHHHHT-------TTCEEEEECCSSTTCC---HHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCccEEEEECCCCCCH----HHHHHHHHHHHh-------CCCEEEEEeeCCCcCC---chhhHHHHHHHHHHHHhhhhh
Confidence 35789999999974332 222333334444 6788887765432221 122345666677777776443
Q ss_pred CCCCCCCCCCc--cCCccccccCccceeeeccccccccchhhhcccccCCCCCCCCCCCcccCCCCCChhhhhHhHcCCC
Q psy1288 723 LQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDYGSPANSSQFEYLLGYSP 800 (1012)
Q Consensus 723 ~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Sp 800 (1012)
. ...|..+++ |.|.| ++.++.+....+ ++.+.|. + .+..+
T Consensus 115 ~-~~vD~~rI~v~G~S~G-------G~~al~aa~~~~-~~~A~v~----~-------------------------~~~~~ 156 (260)
T d1jfra_ 115 R-TRVDATRLGVMGHSMG-------GGGSLEAAKSRT-SLKAAIP----L-------------------------TGWNT 156 (260)
T ss_dssp G-GGEEEEEEEEEEETHH-------HHHHHHHHHHCT-TCSEEEE----E-------------------------SCCCS
T ss_pred h-ccccccceEEEecccc-------chHHHHHHhhhc-cchhhee----e-------------------------ecccc
Confidence 2 334555565 88888 666655433322 2222221 0 01112
Q ss_pred CCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCch
Q psy1288 801 LHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTT 872 (1012)
Q Consensus 801 ~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~ 872 (1012)
..... ++..|+|++||++|..||+.+..+++..+...+. |.+|+.+++++|++..+.+
T Consensus 157 ~~~~~-------~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~-------~~~~~~i~ga~H~~~~~~~ 214 (260)
T d1jfra_ 157 DKTWP-------ELRTPTLVVGADGDTVAPVATHSKPFYESLPGSL-------DKAYLELRGASHFTPNTSD 214 (260)
T ss_dssp CCCCT-------TCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTS-------CEEEEEETTCCTTGGGSCC
T ss_pred ccccc-------ccccceeEEecCCCCCCCHHHHHHHHHHhcccCC-------CEEEEEECCCccCCCCCCh
Confidence 22334 5669999999999999999987776666555556 9999999999999876544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.28 E-value=5.6e-05 Score=84.01 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=59.9
Q ss_pred CCeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 110 SPQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 110 ~p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
...+|.+.++++...+ .+ .|.+.+...++...-++. + ..+..+++|||||+|+ +.+.+| .|.++|
T Consensus 25 ~~~~d~~~~~~V~~~~-dg--~v~vwD~~t~~~~~~l~~------g-~~~~~vafSPDGk~l~-~~~~d~----~v~vwd 89 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRD-AG--QIALVDGDSKKIVKVIDT------G-YAVHISRMSASGRYLL-VIGRDA----RIDMID 89 (426)
T ss_dssp CSCCCGGGEEEEEETT-TT--EEEEEETTTCSEEEEEEC------C-SSEEEEEECTTSCEEE-EEETTS----EEEEEE
T ss_pred cccCCCCeEEEEEEcC-CC--EEEEEECCCCcEEEEEeC------C-CCeeEEEECCCCCEEE-EEeCCC----CEEEEE
Confidence 3346767677776543 23 344446666654333331 2 2366899999999985 555544 799999
Q ss_pred CCCCceece-eec-----ceeeeeeEEeeCCCeEEEEe
Q psy1288 190 VATGKEYPE-VLH-----RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 190 l~tg~~~~~-t~~-----~~~~~~~~WSpDG~~l~y~~ 221 (1012)
+++++.... .+. .....++.|||||+.|+...
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~ 127 (426)
T d1hzua2 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127 (426)
T ss_dssp TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee
Confidence 999874321 111 11124678889999987664
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.27 E-value=5.3e-05 Score=80.32 Aligned_cols=228 Identities=13% Similarity=0.105 Sum_probs=125.1
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
..|+|+.++|.. + ..+++.+........++. ++...+..++|||||++||-.. .+| .|.++|+
T Consensus 25 ~~~~g~~l~~~~--~----~~v~i~~~~~~~~~~~~~------~H~~~v~~~~~sp~g~~latg~-~dg----~i~iwd~ 87 (311)
T d1nr0a1 25 NTPAGDKIQYCN--G----TSVYTVPVGSLTDTEIYT------EHSHQTTVAKTSPSGYYCASGD-VHG----NVRIWDT 87 (311)
T ss_dssp ECTTSSEEEEEE--T----TEEEEEETTCSSCCEEEC------CCSSCEEEEEECTTSSEEEEEE-TTS----EEEEEES
T ss_pred EcCCCCEEEEEe--C----CEEEEEECCCCceeEEEc------CCCCCEEEEEEeCCCCeEeccc-cCc----eEeeeee
Confidence 358999998863 2 135556665544433332 1345688999999999997543 333 7999999
Q ss_pred CCCceec-eee--cceeeeeeEEeeCCCeEEEEecCCCCCcc---cCCCC-CceEEEEeeccccceeeeeeecCCCEEEE
Q psy1288 191 ATGKEYP-EVL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSK---KHSKK-NRSSAYHLTVNVAPITSQYITNEGPQFVF 263 (1012)
Q Consensus 191 ~tg~~~~-~t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~---~~~~~-~~~l~~~~~~~~~~i~~~~~s~dg~~l~~ 263 (1012)
.+++... ..+ .......+.|+|||+.|+........... .+... ...+..| ...+....|+|+++.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h----~~~v~~v~~~~~~~~~l~ 163 (311)
T d1nr0a1 88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ----ARAMNSVDFKPSRPFRII 163 (311)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC----SSCEEEEEECSSSSCEEE
T ss_pred eccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc----ccccccccccccceeeec
Confidence 8876432 222 22345789999999988776543111000 00000 0000000 022334458899987666
Q ss_pred EECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeeecCC---
Q psy1288 264 KTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD--- 339 (1012)
Q Consensus 264 ~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~--- 339 (1012)
....+ ..+...|+.+.+ .......... .+..+.+. +++.++ ....+ ..+.+|++.++.....+...
T Consensus 164 sgs~d---~~i~i~d~~~~~---~~~~~~~~~~-~i~~v~~~p~~~~l~-~~~~d--~~v~~~d~~~~~~~~~~~~~~~~ 233 (311)
T d1nr0a1 164 SGSDD---NTVAIFEGPPFK---FKSTFGEHTK-FVHSVRYNPDGSLFA-STGGD--GTIVLYNGVDGTKTGVFEDDSLK 233 (311)
T ss_dssp EEETT---SCEEEEETTTBE---EEEEECCCSS-CEEEEEECTTSSEEE-EEETT--SCEEEEETTTCCEEEECBCTTSS
T ss_pred ccccc---cccccccccccc---cccccccccc-cccccccCccccccc-ccccc--ccccccccccccccccccccccc
Confidence 54432 356677776644 1222222222 23333333 434444 33333 34677888666544333221
Q ss_pred ----ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 340 ----VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 340 ----~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...+..+.|+|+++.|+.... -..|..+|+
T Consensus 234 ~~~h~~~V~~~~~s~~~~~l~tgs~----Dg~v~iwd~ 267 (311)
T d1nr0a1 234 NVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNV 267 (311)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEET
T ss_pred cccccccccccccCCCCCEEEEEeC----CCeEEEEEC
Confidence 245778889999987664332 236888998
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.26 E-value=1.8e-07 Score=102.62 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=99.4
Q ss_pred CCCCcEEEEeeCCCCCCChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc----ccchhhhhHHHHHHHHh
Q psy1288 644 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT----TKQFPLTIPVIYFYLTS 719 (1012)
Q Consensus 644 ~~~P~vLiihG~~D~~v~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~----~~~~~~~~~~~~fl~~~ 719 (1012)
.+.|.|+++||..-... ....+...|.. .++.++.+..+ |||..... .+.......+++|+...
T Consensus 129 ~~~P~Vi~~hG~~~~~e---~~~~~~~~l~~--------~G~~vl~~D~~-G~G~s~~~~~~~~~~~~~~~~v~d~l~~~ 196 (360)
T d2jbwa1 129 GPHPAVIMLGGLESTKE---ESFQMENLVLD--------RGMATATFDGP-GQGEMFEYKRIAGDYEKYTSAVVDLLTKL 196 (360)
T ss_dssp CCEEEEEEECCSSCCTT---TTHHHHHHHHH--------TTCEEEEECCT-TSGGGTTTCCSCSCHHHHHHHHHHHHHHC
T ss_pred CCceEEEEeCCCCccHH---HHHHHHHHHHh--------cCCEEEEEccc-cccccCccccccccHHHHHHHHHHHHHhc
Confidence 46787888888633222 22233444544 45555555433 46543211 11123344566777655
Q ss_pred CCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCCC--CCCCcccCCCCCChh
Q psy1288 720 GPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFTI--GYFWESDYGSPANSS 790 (1012)
Q Consensus 720 l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~g~~~~~~ 790 (1012)
- ..+..+++ |.|.| ++.++.+....|+ +.+ |+.|+..+..... ...|....+.....+
T Consensus 197 ~-----~vd~~rI~l~G~S~G-------G~~Al~~A~~~pr-i~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T d2jbwa1 197 E-----AIRNDAIGVLGRSLG-------GNYALKSAACEPR-LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEE 263 (360)
T ss_dssp T-----TEEEEEEEEEEETHH-------HHHHHHHHHHCTT-CCEEEEESCCSCSTTGGGSCHHHHHHHHHHTTCSSHHH
T ss_pred c-----cccccceeehhhhcc-------cHHHHHHhhcCCC-cceEEEEcccccHHHHhhhhhhhhHHHHHhccCCchHH
Confidence 2 22344554 88988 5555544333343 222 3333221110000 000000112222111
Q ss_pred h-hhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 791 Q-FEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 791 ~-~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
. ......++....++ +|+.|+||+||++|. ||+.++.++++++... .+.++++++.||..
T Consensus 264 ~~~~~~~~~~~~~~~~-------~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~~---------~~~l~~~~~g~H~~ 324 (360)
T d2jbwa1 264 ARLHVHAALETRDVLS-------QIACPTYILHGVHDE-VPLSFVDTVLELVPAE---------HLNLVVEKDGDHCC 324 (360)
T ss_dssp HHHHHHHHTCCTTTGG-------GCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---------GEEEEEETTCCGGG
T ss_pred HHHHHHhhcchhhhHh-------hCCCCEEEEEeCCCC-cCHHHHHHHHHhcCCC---------CeEEEEECCCCcCC
Confidence 1 23345667667777 899999999999996 9999999999988765 56888999999964
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.25 E-value=7.9e-07 Score=102.47 Aligned_cols=133 Identities=20% Similarity=0.134 Sum_probs=87.8
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCC-CCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhh-hhcC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVS-LQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDG-GRLL 487 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~-~~~~ 487 (1012)
|.|-..| -++.|+....+.+.|++|++|||.-.. ....+...........+++|+.+|||-+. +|--.... ....
T Consensus 77 sEDCL~L--nI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~-~GFl~~~~~~~~~ 153 (517)
T d1ukca_ 77 SEDCLFI--NVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGA-LGFLASEKVRQNG 153 (517)
T ss_dssp ESCCCEE--EEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHH-HHHCCCHHHHHSS
T ss_pred CCcCCEE--EEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccc-eeecCcccccccc
Confidence 4455444 456687655567789999999984222 22334443333334456899999999642 11111111 1111
Q ss_pred CCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC----CCceeEEEEccC
Q psy1288 488 NKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR----PDLFGAAIVQVG 545 (1012)
Q Consensus 488 ~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~ 545 (1012)
.+...+.|.+.|++|+.++- -.||++|.|+|+|+||..+...+... ..+|..+|+.+|
T Consensus 154 ~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg 218 (517)
T d1ukca_ 154 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESS 218 (517)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESC
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccc
Confidence 23446789999999999873 27999999999999999887666442 248999999988
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=98.24 E-value=3.8e-08 Score=101.97 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=77.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhhhcccccCCCCCCCCCCCcccCCCCCCh
Q psy1288 712 VIYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIAEVLDMLKFNKFTIGYFWESDYGSPANS 789 (1012)
Q Consensus 712 ~~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 789 (1012)
++.+++..... ..|..+++ |.|.| +|.++.....+|++|.+.+.= .+..|....+..+.
T Consensus 108 l~~~v~~~~~~---~~d~~~~~i~G~S~G-------G~~al~~~~~~P~~F~a~~~~--------sg~~~~~~~~~~~~- 168 (246)
T d3c8da2 108 LLPLVKVIAPF---SDRADRTVVAGQSFG-------GLSALYAGLHWPERFGCVLSQ--------SGSYWWPHRGGQQE- 168 (246)
T ss_dssp HHHHHHHHSCC---CCCGGGCEEEEETHH-------HHHHHHHHHHCTTTCCEEEEE--------SCCTTTTCTTSSSC-
T ss_pred hhhHHHHhccc---ccCccceEEEecCch-------hHHHhhhhccCCchhcEEEcC--------CcccccccCCccch-
Confidence 34455554332 23344444 88988 666666666667777553320 01112222222221
Q ss_pred hhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 790 SQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 790 ~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
......+++.++. +..+|+++.+|.+|.++. .++++|+++|+++|+ ++.|+++|+ ||...
T Consensus 169 ---~~~~~~~~~~~~~-------~~~~~~~l~~G~~D~~~~-~~~~~l~~~L~~~g~-------~~~~~~~~G-gH~~~ 228 (246)
T d3c8da2 169 ---GVLLEKLKAGEVS-------AEGLRIVLEAGIREPMIM-RANQALYAQLHPIKE-------SIFWRQVDG-GHDAL 228 (246)
T ss_dssp ---CHHHHHHHTTSSC-------CCSCEEEEEEESSCHHHH-HHHHHHHHHTGGGTT-------SEEEEEESC-CSCHH
T ss_pred ---HHHHHHhhhhhhh-------ccCCCeEEEecCCCcchh-HHHHHHHHHHHHCCC-------CEEEEEeCC-CCChH
Confidence 1223446677777 778999999999999884 789999999999999 999999987 89653
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=5.9e-08 Score=101.51 Aligned_cols=60 Identities=13% Similarity=-0.006 Sum_probs=48.4
Q ss_pred hHcCCCCCCCCCCCCCCCCCCCceEEEcccC--------CCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 795 LLGYSPLHNIQGPNELKGKQYPATLLMTADH--------DDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~--------D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
+...+++.+.+ +..+|+++.+|++ |.+|++.++.+++++|+++|+ ++++.+||++|||
T Consensus 183 ~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~l~~~L~~~g~-------~~~~~~~pG~~Hg 248 (265)
T d2gzsa1 183 LSRVTAVEPLQ-------FCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGV-------NAVFWDFPNLGHG 248 (265)
T ss_dssp HHHHHTSCTTT-------TTTCEEEEEECCC-----------CHHHHHHHHHHHHHHTTC-------CEEEEECTTCCHH
T ss_pred hhccccccccc-------cCCCcEEEEcCCcccccccccccchhHHHHHHHHHHHHHCCC-------CEEEEEcCCCCcc
Confidence 44556666666 6668999999977 888999999999999999999 9999999999998
Q ss_pred CC
Q psy1288 867 GG 868 (1012)
Q Consensus 867 ~~ 868 (1012)
..
T Consensus 249 ~~ 250 (265)
T d2gzsa1 249 PM 250 (265)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=8.8e-07 Score=101.19 Aligned_cols=129 Identities=19% Similarity=0.171 Sum_probs=86.6
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC---CCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhh-h
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL---QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGG-R 485 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~---~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~-~ 485 (1012)
+.|-.. .-++.|+. ..++.|++|++|||..... ...++. ..++.+.+++||.+|||-+. +|-...... .
T Consensus 78 sEDCL~--lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~--~~~~~~~~vVvV~~nYRlg~-~GFl~~~~~~~ 150 (483)
T d1qe3a_ 78 SEDCLY--VNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGP-FGFLHLSSFDE 150 (483)
T ss_dssp CSCCCE--EEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHH-HHSCCCTTTCT
T ss_pred CCcCCE--EEEEECCC--CCCCCceEEEEeecccccCCcccccccc--ccccccCceEEEeecccccc-hhhcccccccc
Confidence 445443 45566764 3567999999999843322 222332 33455557999999999643 221111111 1
Q ss_pred cCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 486 LLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 486 ~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
...+...+.|.+.|++|+.++- -.||++|.|+|+|+||..+...+... ..+|..+|+.+|
T Consensus 151 ~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SG 215 (483)
T d1qe3a_ 151 AYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESG 215 (483)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESC
T ss_pred ccccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccC
Confidence 1233456789999999998873 26999999999999999988776542 248999999988
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.14 E-value=1.1e-06 Score=101.84 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=87.8
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChhH---HHHHHhCCeEEEEEcCCCCCCCchhHHh-hh
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVTK---IVFLRDFNGIYAIPNIRGGGEYGERWHD-GG 484 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~---~~~l~~~G~~v~~~d~RG~g~~g~~~~~-~~ 484 (1012)
|.|-.. .-++.|+......+.|++|++|||...... ..|+... ...+..++++||.+|||.+. +|--... ..
T Consensus 94 sEDCL~--LnI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~-~GFl~~~~~~ 170 (534)
T d1llfa_ 94 SEDCLT--INVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVAS-WGFLAGDDIK 170 (534)
T ss_dssp CSCCCE--EEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHH
T ss_pred CCcCCE--EEEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCc-ccccCCcccc
Confidence 345544 456677766667889999999998532222 2243331 12344568999999999643 1211111 01
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCC---CCCCcEEEEecChHHHHHHHHHhh-----CC---CceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGY---TQSSRLAIQGGSNGGLLTAACINQ-----RP---DLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~---~d~~~i~i~G~S~GG~l~~~~~~~-----~p---~~f~a~v~~~~ 545 (1012)
....+...+.|.+.+++|+.++-. .||++|.|+|+|+||..+...+.. .| .+|..+|+.+|
T Consensus 171 ~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSG 242 (534)
T d1llfa_ 171 AEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSG 242 (534)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESC
T ss_pred cccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccC
Confidence 112334567899999999998732 799999999999999988766641 12 27999999987
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=98.12 E-value=1.5e-07 Score=100.15 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=78.4
Q ss_pred CCCCCc--cCCccccccCccceeeeccccccccchhhhc--ccccCCCCCCCCCCCcccC-CCC--CChhhhhHhHcCCC
Q psy1288 728 ETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIAEV--LDMLKFNKFTIGYFWESDY-GSP--ANSSQFEYLLGYSP 800 (1012)
Q Consensus 728 d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~~Sp 800 (1012)
|+.++. |.|.| +|+++..+...++.|.+|+ +--..+.-..........+ +.+ ..++....+...+.
T Consensus 9 Dp~rI~V~G~SsG-------G~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (318)
T d2d81a1 9 NPNSVSVSGLASG-------GYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQ 81 (318)
T ss_dssp EEEEEEEEEETHH-------HHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTT
T ss_pred CccceEEEEECHH-------HHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcC
Confidence 445554 88999 8887765566688886532 2111111111111111111 111 12333344444444
Q ss_pred CCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 801 LHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 801 ~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+..+. ....+|+||+||.+|.+||+.++.+++++|+..+. +..+.|+.++++||++-.+
T Consensus 82 i~~~~------~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~-----~~~v~yv~~~gagH~fpT~ 140 (318)
T d2d81a1 82 IASVA------NLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDN-----SANVSYVTTTGAVHTFPTD 140 (318)
T ss_dssp BCCGG------GGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSC-----GGGEEEEEETTCCSSEEES
T ss_pred Ccchh------ccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcC-----CCceEEEEeCCCCCCCCCC
Confidence 44444 15679999999999999999999999999998755 3389999999999998544
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=2e-06 Score=99.34 Aligned_cols=130 Identities=18% Similarity=0.120 Sum_probs=89.3
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCC-CCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSL-QPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
|.|-..| -++.|+....+.+.|++|++|||..... ...+... .++...+.+||.+|||-+. +|-... ......
T Consensus 93 sEDCL~L--nI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~--~~~~~~~vIvVt~nYRLg~-~GFl~~-~~~~~~ 166 (532)
T d2h7ca1 93 SEDCLYL--NIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGL--ALAAHENVVVVTIQYRLGI-WGFFST-GDEHSR 166 (532)
T ss_dssp ESCCCEE--EEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCH--HHHHHHTCEEEEECCCCHH-HHHCCC-SSTTCC
T ss_pred CCcCCEE--EEEECCCCCCCCCcEEEEEEeCCcccccccccCCch--hhhhcCceEEEEEeeccCC-Cccccc-cccccc
Confidence 4565444 4566876666778999999999843322 2233332 3455579999999999642 121111 111123
Q ss_pred CcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 489 KQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
+...+.|.+.|++|+.++- -.||++|.|+|+|+||..+...+.. ...+|..+|+.++
T Consensus 167 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG 228 (532)
T d2h7ca1 167 GNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESG 228 (532)
T ss_dssp CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESC
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcc
Confidence 3456889999999998872 2799999999999999988777654 2458999999988
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.10 E-value=0.00041 Score=73.17 Aligned_cols=194 Identities=10% Similarity=-0.030 Sum_probs=108.4
Q ss_pred eeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCC-c
Q psy1288 160 GSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKN-R 236 (1012)
Q Consensus 160 ~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~-~ 236 (1012)
..+++||||++|||... + .++++|+++++.... +........++|||||+.|+-...++...-. ...... .
T Consensus 21 ~~~a~~~~g~~l~~~~~---~---~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCNG---T---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CCCEECTTSSEEEEEET---T---EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred EEEEEcCCCCEEEEEeC---C---EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence 35688999999999742 2 588999998776443 2223346889999999988765544211000 000000 0
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEE
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYI 315 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~ 315 (1012)
...+. .....+....|+++++.|+..+.......++ .+++..+. ...+..+. .. +..+.+ .+++.+++...
T Consensus 95 ~~~~~--~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v--~~~~~~~~--~~~l~~h~-~~-v~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 95 KTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHV--FLFDTGTS--NGNLTGQA-RA-MNSVDFKPSRPFRIISGS 166 (311)
T ss_dssp EEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEE--EETTTCCB--CBCCCCCS-SC-EEEEEECSSSSCEEEEEE
T ss_pred ccccc--cccCccccccccccccccccccccccccccc--cccccccc--cccccccc-cc-cccccccccceeeecccc
Confidence 00010 0113344456999999888877532223334 44544331 12222222 22 233333 24344555444
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++ .+.+|++.+++....+......+..+.++|+++.++..... ..+.++|+
T Consensus 167 ~d~--~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d----~~v~~~d~ 218 (311)
T d1nr0a1 167 DDN--TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD----GTIVLYNG 218 (311)
T ss_dssp TTS--CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred ccc--ccccccccccccccccccccccccccccCcccccccccccc----cccccccc
Confidence 444 47788987776555554444556678899999877655432 34778888
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=1.5e-06 Score=100.83 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCC---CCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFA---VSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~---~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
+.|-..| -++.|.. ....+.|++|++|||.. ....+.+... .+.+..+++|+.+|||-+. +|-........
T Consensus 93 sEDCL~L--nI~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~--~~~~~~~vvvVt~nYRlg~-~Gfl~~~~~~~ 166 (542)
T d2ha2a1 93 SEDCLYL--NVWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGR--FLAQVEGAVLVSMNYRVGT-FGFLALPGSRE 166 (542)
T ss_dssp ESCCCEE--EEEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTH--HHHHHHCCEEEEECCCCHH-HHHCCCTTCSS
T ss_pred CCcCCEE--EEEecCC-CCCCCCcEEEEEEECccccccCcccccCch--hhhhhccceeEeeeeeccc-eeeeccccccc
Confidence 4455444 4555764 33567899999999842 2223334433 2334468999999999532 12111111112
Q ss_pred CCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
..+...+.|.+.+++|+.++- -.||++|.|+|+|+||..+..++... ..+|..+|+.++
T Consensus 167 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG 230 (542)
T d2ha2a1 167 APGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSG 230 (542)
T ss_dssp CCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESC
T ss_pred CCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecc
Confidence 233446889999999998872 26999999999999999988776542 248999999988
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=98.08 E-value=6.8e-07 Score=92.62 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=42.0
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+..+|++|.||++|..++ .+++|+++|+++|+ +++|..++++||++.
T Consensus 188 ~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~-------~~~~~~~~~ggH~~~ 234 (255)
T d1jjfa_ 188 EKLKLLFIACGTNDSLIG--FGQRVHEYCVANNI-------NHVYWLIQGGGHDFN 234 (255)
T ss_dssp HHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTC-------CCEEEEETTCCSSHH
T ss_pred ccCCcceEEeCCCCCCch--HHHHHHHHHHHCCC-------CEEEEEECCCCcCHH
Confidence 445899999999999988 46799999999999 999999999999864
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.07 E-value=1.7e-06 Score=100.25 Aligned_cols=133 Identities=21% Similarity=0.235 Sum_probs=87.7
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCC-CCcChh---HHHHHHhCCeEEEEEcCCCCCCCchhHHhh-h
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQ-PGFSVT---KIVFLRDFNGIYAIPNIRGGGEYGERWHDG-G 484 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~-~ 484 (1012)
|.|-..| -++.|++.....+.|++|++|||.-.... ..+... ...+....+++|+.+|||-+- +|-..... .
T Consensus 102 sEDCL~L--nI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~-~Gfl~~~~~~ 178 (544)
T d1thga_ 102 NEDCLYL--NVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FGFLGGDAIT 178 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HHHCCSHHHH
T ss_pred CCcCCEE--EEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEeccccccc-ccccCCchhh
Confidence 4455444 45668776667789999999998532221 122221 122334557999999999532 11111000 0
Q ss_pred hcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--------CCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--------PDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------p~~f~a~v~~~~ 545 (1012)
....+...+.|.+.+++|+.++- -.||++|.|+|+|+||..+...+... ..+|+.+|+++|
T Consensus 179 ~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG 250 (544)
T d1thga_ 179 AEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSG 250 (544)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESC
T ss_pred ccccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhcccccccc
Confidence 11233456789999999998872 37999999999999999888776531 148999999988
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.05 E-value=1.8e-06 Score=95.91 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=52.7
Q ss_pred hHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 793 EYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 793 ~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.+.||+.+++ +|+.|+|+++|.+|..|++.++.++|.+|++ +. |..+++-|. +|+..
T Consensus 297 ~~w~~~s~~~~~~-------~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~~-~~-------~~~Lilgpw-~H~~~ 356 (405)
T d1lnsa3 297 QFWHDRNYLINTD-------KVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GH-------AKHAFLHRG-AHIYM 356 (405)
T ss_dssp HHHHTTBGGGGGG-------GCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TC-------CEEEEEESC-SSCCC
T ss_pred hhhhhcChhhhhh-------cCCCCEEEEEeccCCCCCHHHHHHHHHHHHh-CC-------CcEEEEeCC-CCCCC
Confidence 4567889999999 9999999999999999999999999999974 55 889999886 69753
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=0.0003 Score=73.97 Aligned_cols=249 Identities=9% Similarity=-0.074 Sum_probs=113.1
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEEC
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDV 190 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl 190 (1012)
.+|||+++|..-.. ++.-.+|..+..+...++..... .......+.|||||++|+..... + . .+.+++.
T Consensus 44 ~spDG~~L~v~~~~--d~~i~~~~i~~~~~~~~~~~~~~-----~~~~p~~l~~spDg~~l~v~~~~-~-~--~v~~~~~ 112 (333)
T d1ri6a_ 44 VSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAESA-----LPGSLTHISTDHQGQFVFVGSYN-A-G--NVSVTRL 112 (333)
T ss_dssp ECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEE-----CSSCCSEEEECTTSSEEEEEETT-T-T--EEEEEEE
T ss_pred EeCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEeeecc-----cCCCceEEEEcCCCCEEeecccC-C-C--ceeeecc
Confidence 46999998754332 23456676665544444332211 11224468999999998765432 2 2 4555555
Q ss_pred CCCceece---eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCC-CCceEEEEe-e--c-cccceeeeeeecCCCEEE
Q psy1288 191 ATGKEYPE---VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSK-KNRSSAYHL-T--V-NVAPITSQYITNEGPQFV 262 (1012)
Q Consensus 191 ~tg~~~~~---t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~-~~~~l~~~~-~--~-~~~~i~~~~~s~dg~~l~ 262 (1012)
+.+..... ........++.++||++.++............+.. ......... . . .........+++++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence 55443221 11112235689999999887765432100000000 000000000 0 0 001112335778888776
Q ss_pred EEECCCCCCceEEEEeCCCCcccCcEEeec--cC---CCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeec
Q psy1288 263 FKTNKDAPNYRLITIDFDNFAESNWKTLIE--EN---KDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFP 337 (1012)
Q Consensus 263 ~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~--~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~ 337 (1012)
+..... ....++..+...........+.. .. ...........+++.+++.....+...++..+.. +.......
T Consensus 193 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 270 (333)
T d1ri6a_ 193 CVNELN-SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-GSVLSKEG 270 (333)
T ss_dssp EEETTT-TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCCEEEEE
T ss_pred eecccc-CceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC-CCEEEEEE
Confidence 665432 22333333322211101111111 10 0111112223454566655554444555555542 32222111
Q ss_pred -CC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 338 -LD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 338 -~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+ ......++++|||+.|++. ++...--.+|.+|.
T Consensus 271 ~~~~~~~p~~~a~spDGk~l~va-~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 271 FQPTETQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVG 307 (333)
T ss_dssp EEECSSSCCCEEECTTSSEEEEE-CTTTCEEEEEEEET
T ss_pred EeCCCCCeeEEEEeCCCCEEEEE-ECCCCeEEEEEEEC
Confidence 11 1223356889999987654 33333345777787
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.04 E-value=1.8e-06 Score=99.89 Aligned_cols=129 Identities=20% Similarity=0.166 Sum_probs=86.6
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCC---CCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFA---VSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~---~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
|.|-..|. ++.|+. ...+.|++|++|||.. ......++.. .++...+.+||.+|||-+. +|-........
T Consensus 88 sEDCL~Ln--I~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~--~~~~~~~vvvVt~nYRlg~-~GFl~~~~~~~ 160 (532)
T d1ea5a_ 88 SEDCLYLN--IWVPSP--RPKSTTVMVWIYGGGFYSGSSTLDVYNGK--YLAYTEEVVLVSLSYRVGA-FGFLALHGSQE 160 (532)
T ss_dssp CSCCCEEE--EEECSS--CCSSEEEEEEECCSTTTCCCTTCGGGCTH--HHHHHHTCEEEECCCCCHH-HHHCCCTTCSS
T ss_pred CccCCEEE--EEeCCC--CCCCCcEEEEEEcCCcccccCCccccCcc--hhhcccCccEEEEeecccc-ccccccccccC
Confidence 45655554 456764 3457899999999842 2222333332 3445568999999999632 22111111112
Q ss_pred CCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
..+...+.|.+.|++|+.++- -.||++|.|+|+|+||..+...+... ..+|..+|+.++
T Consensus 161 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg 224 (532)
T d1ea5a_ 161 APGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSG 224 (532)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESC
T ss_pred CCCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecc
Confidence 234456889999999999873 27999999999999999887776542 248999999887
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=98.03 E-value=5.1e-07 Score=98.82 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=41.2
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
--+|+||+||++|+.+ .|+++|+++||+.|+ ++++++|++++|||
T Consensus 284 ~lPp~li~~g~~D~l~--~e~~~~~~~L~~aGv-------~v~~~~~~g~~Hgf 328 (358)
T d1jkma_ 284 GLPPFVVAVNELDPLR--DEGIAFARRLARAGV-------DVAARVNIGLVHGA 328 (358)
T ss_dssp TCCCEEEEEETTCTTH--HHHHHHHHHHHHTTC-------CEEEEEETTCCTTH
T ss_pred CCCCEEEEECCCCCCH--HHHHHHHHHHHHCCC-------cEEEEEECCCccch
Confidence 3589999999999654 699999999999999 99999999999997
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=98.02 E-value=1.7e-06 Score=86.58 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=42.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
...+|+|++||++|+.|| .++.++.+.|++.|. ++++..+++ ||++..
T Consensus 149 ~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~-------~v~~~~~~g-gH~i~~ 196 (209)
T d3b5ea1 149 LAGIRTLIIAGAADETYG-PFVPALVTLLSRHGA-------EVDARIIPS-GHDIGD 196 (209)
T ss_dssp CTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTC-------EEEEEEESC-CSCCCH
T ss_pred cccchheeeeccCCCccC-HHHHHHHHHHHHCCC-------CeEEEEECC-CCCCCH
Confidence 345999999999999998 688899999999988 999999987 899963
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3e-06 Score=97.71 Aligned_cols=129 Identities=20% Similarity=0.123 Sum_probs=85.1
Q ss_pred CCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCC---CCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhc
Q psy1288 410 SKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAV---SLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRL 486 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~---~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~ 486 (1012)
|.|-..| -++.|.. ..++.|++|++|||... .....++.. .+..+.+++|+.+|||-+. +|--.......
T Consensus 86 sEDCL~l--nI~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~--~~~~~~~vVvVt~nYRlg~-~Gfl~~~~~~~ 158 (526)
T d1p0ia_ 86 SEDCLYL--NVWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGK--FLARVERVIVVSMNYRVGA-LGFLALPGNPE 158 (526)
T ss_dssp CSCCCEE--EEEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTH--HHHHHHCCEEEEECCCCHH-HHHCCCTTCTT
T ss_pred CCcCCEE--EEEeCCC--CCCCCceEEEEECCCcccccCcccccCcc--ccccccceeEEeccccccc-ccccCCCCccc
Confidence 4455444 4556764 34578999999998432 222233332 2334458999999999532 11111111112
Q ss_pred CCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 487 LNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 487 ~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
..+...+.|.+.|++|+.++- -.||++|.|+|+|+||..+...+.. ...+|..+|..++
T Consensus 159 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg 222 (526)
T d1p0ia_ 159 APGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSG 222 (526)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESC
T ss_pred ccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccc
Confidence 234456889999999998872 3799999999999999998776643 2348999998887
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.95 E-value=0.00028 Score=74.43 Aligned_cols=95 Identities=15% Similarity=0.024 Sum_probs=58.0
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
++|++++.. ... ..|.+.+...++...-+... +......+.|||||+++..+...++ .|+++|+++
T Consensus 6 ~~~~~l~~~-~~~----~~v~v~D~~t~~~~~t~~~~-----~~~~p~~l~~spDG~~l~v~~~~~~----~v~~~d~~t 71 (346)
T d1jmxb_ 6 AGHEYMIVT-NYP----NNLHVVDVASDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYG----DIYGIDLDT 71 (346)
T ss_dssp TTCEEEEEE-ETT----TEEEEEETTTTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTT----EEEEEETTT
T ss_pred CCCcEEEEE-cCC----CEEEEEECCCCCEEEEEEcC-----CCCCcceEEECCCCCEEEEEECCCC----cEEEEeCcc
Confidence 555555543 332 25777787666433222210 1123457899999999876554433 799999999
Q ss_pred Cceeceeecc-------eeeeeeEEeeCCCeEEEEe
Q psy1288 193 GKEYPEVLHR-------LKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 193 g~~~~~t~~~-------~~~~~~~WSpDG~~l~y~~ 221 (1012)
++........ .....+++||||+.++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 72 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CeeeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence 9865321111 1135689999999887664
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=0.0012 Score=69.01 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=51.5
Q ss_pred EEEEEEEcCCCCeeEEEEEeCCCCceEEE--cCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCc
Q psy1288 117 HYFFFHNTGLQNHSVMYIQDSLDGEARVF--LDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGK 194 (1012)
Q Consensus 117 ~~yy~~~~~~~~~~~l~~~~~~~g~~~~L--~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~ 194 (1012)
+..|+.... .+.-.+|-.+.. +..+++ ++ ....+..++|||||++|+.+...++ .|.+++++++.
T Consensus 4 ~~v~v~~~~-~~~I~v~~~~~~-~~l~~~~~~~-------~~~~v~~la~spDG~~L~v~~~~d~----~i~~~~i~~~~ 70 (333)
T d1ri6a_ 4 QTVYIASPE-SQQIHVWNLNHE-GALTLTQVVD-------VPGQVQPMVVSPDKRYLYVGVRPEF----RVLAYRIAPDD 70 (333)
T ss_dssp EEEEEEEGG-GTEEEEEEECTT-SCEEEEEEEE-------CSSCCCCEEECTTSSEEEEEETTTT----EEEEEEECTTT
T ss_pred eEEEEECCC-CCcEEEEEEcCC-CCeEEEEEEc-------CCCCEeEEEEeCCCCEEEEEECCCC----eEEEEEEeCCC
Confidence 455666543 234456665542 333322 33 1224668899999999955443233 46666665443
Q ss_pred --eeceee--cceeeeeeEEeeCCCeEEEEec
Q psy1288 195 --EYPEVL--HRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 195 --~~~~t~--~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
...... .......++|||||+.|+....
T Consensus 71 ~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~ 102 (333)
T d1ri6a_ 71 GALTFAAESALPGSLTHISTDHQGQFVFVGSY 102 (333)
T ss_dssp CCEEEEEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred CcEEEeeecccCCCceEEEEcCCCCEEeeccc
Confidence 222111 1122356899999999877653
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=5.8e-06 Score=83.93 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=44.2
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+|+|++||++|..||..+++++++.||+.+. |..+++.+|++.||.+..
T Consensus 163 ~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~-----~~~v~~~~~~g~gH~i~~ 212 (229)
T d1fj2a_ 163 DISILQCHGDCDPLVPLMFGSLTVEKLKTLVN-----PANVTFKTYEGMMHSSCQ 212 (229)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHHHSC-----GGGEEEEEETTCCSSCCH
T ss_pred cCceeEEEcCCCCeeCHHHHHHHHHHHHhcCC-----CCceEEEEeCCCCCccCH
Confidence 48999999999999999999999999999632 228999999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.88 E-value=0.00095 Score=69.84 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=53.2
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ec-----cee
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LH-----RLK 204 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~-----~~~ 204 (1012)
.|.+.+...++....+.... .......+++||||++|+.+...+| .|+++|+++|+.+... .. ...
T Consensus 12 ~v~v~D~~s~~~~~~i~~~~----~~~~~~~i~~spDg~~l~v~~~~~~----~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 12 KLVVIDTEKMAVDKVITIAD----AGPTPMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEEETTTTEEEEEEECTT----CTTCCCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEEEECCCCeEEEEEECCC----CCCCccEEEECCCCCEEEEEECCCC----eEEEEECCCCcEEEEEecCCCcccccc
Confidence 56666776655433332111 1123567899999999876544333 7999999999875321 11 112
Q ss_pred eeeeEEeeCCCeEEEEec
Q psy1288 205 FVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 205 ~~~~~WSpDG~~l~y~~~ 222 (1012)
...++|||||+.++....
T Consensus 84 ~~~v~~s~dg~~l~~~~~ 101 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYES 101 (337)
T ss_dssp TTCEEECTTSSEEEEEEE
T ss_pred eeeEEEcCCCcEEEEeec
Confidence 357899999999877753
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.86 E-value=1.5e-05 Score=92.77 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=79.5
Q ss_pred CCCCCcEEEEEcCCC---CCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhH------HhhhhcCCCcchHhHHHH
Q psy1288 428 LDGNNPCILYGYGGF---AVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERW------HDGGRLLNKQNVFDDFQC 498 (1012)
Q Consensus 428 ~~~~~P~vv~~hGg~---~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~------~~~~~~~~~~~~~~D~~a 498 (1012)
..++.|++|++|||. +....+.++... +....+.+||.+|||-+- +|--. .+......+...+.|.+.
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~--l~~~~~vVvVtinYRlg~-fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~ 211 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNADI--MAAVGNVIVASFQYRVGA-FGFLHLAPEMPSEFAEEAPGNVGLWDQAL 211 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCHH--HHHHHTCEEEEECCCCTH-HHHCCCGGGSCGGGTTSSCSCHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchhh--hhhcCCeeEEeecceecc-ccccccccccccccccCCCCcccchHHHH
Confidence 357789999999984 223334455432 333446999999999643 22110 011122234456889999
Q ss_pred HHHHHHHcCC---CCCCcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 499 AAEYLIASGY---TQSSRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 499 ~~~~l~~~~~---~d~~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
|++|+.++-. .||++|.|+|+|+||..+...+... ..+|..+|..++
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg 263 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSG 263 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESC
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceecc
Confidence 9999998832 6999999999999999988776542 348999998887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.86 E-value=0.00064 Score=72.96 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=47.8
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
....++||||++++.+.........+||++|.++|+.+.. +.......+.|||||+.|++....
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-~~~~~~~~~a~SpDG~~l~va~~~ 86 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLPNPVAAHSGSEFALASTS 86 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-EeCCCCccEEEcCCCCEEEEEeec
Confidence 5567899999999876554433445899999999998753 333333568999999999888643
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=97.80 E-value=5.7e-06 Score=80.70 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=35.6
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+.+|+||+||++|..||+.++++++.+++ ++++++++.||..
T Consensus 124 ~~~p~lvi~g~~D~~vp~~~~~~l~~~~~------------~~~~~~~~~gH~~ 165 (186)
T d1uxoa_ 124 SAKHRAVIASKDDQIVPFSFSKDLAQQID------------AALYEVQHGGHFL 165 (186)
T ss_dssp HEEEEEEEEETTCSSSCHHHHHHHHHHTT------------CEEEEETTCTTSC
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHHcC------------CEEEEeCCCCCcC
Confidence 34899999999999999999999987652 2688999999944
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=97.78 E-value=3.8e-05 Score=79.41 Aligned_cols=118 Identities=11% Similarity=0.034 Sum_probs=74.4
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCc
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQ 490 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~ 490 (1012)
-||.+|.+... +..|.||++||..+... .|... ...|+ .+|.|+++|.||.|.....- ......
T Consensus 15 ~~g~~i~y~~~--------G~g~~vvllHG~~~~~~--~~~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~~----~~~~~~ 78 (298)
T d1mj5a_ 15 IKGRRMAYIDE--------GTGDPILFQHGNPTSSY--LWRNI-MPHCA-GLGRLIACDLIGMGDSDKLD----PSGPER 78 (298)
T ss_dssp ETTEEEEEEEE--------SCSSEEEEECCTTCCGG--GGTTT-GGGGT-TSSEEEEECCTTSTTSCCCS----SCSTTS
T ss_pred ECCEEEEEEEE--------cCCCcEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEEeCCCCCCCCCCc----cccccc
Confidence 38888886543 23478889999865443 34433 34465 47999999999977542210 000111
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 491 NVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 491 ~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
....+..+.+..++... ...+++.++|+|+||.+++.++.++|+++.+++...+
T Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~ 132 (298)
T d1mj5a_ 79 YAYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEA 132 (298)
T ss_dssp SCHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred cccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeecccc
Confidence 12223333333333221 2346789999999999999999999999988776644
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=8.3e-06 Score=95.04 Aligned_cols=132 Identities=21% Similarity=0.190 Sum_probs=83.3
Q ss_pred CCCCceEEEEEEEeCCCC-CCCCCcEEEEEcCCC---CCCCCCCcChh----HHHHHHhCCeEEEEEcCCCCCCCchhHH
Q psy1288 410 SKDGTKIPMFILSRKGAQ-LDGNNPCILYGYGGF---AVSLQPGFSVT----KIVFLRDFNGIYAIPNIRGGGEYGERWH 481 (1012)
Q Consensus 410 s~DG~~i~~~l~~p~~~~-~~~~~P~vv~~hGg~---~~~~~~~~~~~----~~~~l~~~G~~v~~~d~RG~g~~g~~~~ 481 (1012)
|.|-..| -++.|.... ...+.|++|++|||. +......+... ...+....+.+||.+|||-+. +|-..
T Consensus 77 sEDCL~L--NI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~GFl~- 152 (579)
T d2bcea_ 77 NEDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LGFLS- 152 (579)
T ss_dssp CSCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HHHCC-
T ss_pred CCcCCEE--EEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-ccccc-
Confidence 4565544 455565432 345789999999984 22222222111 112333346999999999532 22111
Q ss_pred hhhhcCCCcchHhHHHHHHHHHHHcC---CCCCCcEEEEecChHHHHHHHHHhh--CCCceeEEEEccC
Q psy1288 482 DGGRLLNKQNVFDDFQCAAEYLIASG---YTQSSRLAIQGGSNGGLLTAACINQ--RPDLFGAAIVQVG 545 (1012)
Q Consensus 482 ~~~~~~~~~~~~~D~~a~~~~l~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~ 545 (1012)
.......+...+.|.+.|++|+.++- -.||++|.|+|+|+||..+...+.. ...+|+.+|+.+|
T Consensus 153 ~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SG 221 (579)
T d2bcea_ 153 TGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSG 221 (579)
T ss_dssp CSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESC
T ss_pred ccccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccC
Confidence 11112234456889999999998873 2799999999999999988876653 2458999999988
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.0013 Score=70.94 Aligned_cols=238 Identities=8% Similarity=0.053 Sum_probs=119.7
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
+|+|..++.... ++.-.||-.. +++.+.+.... ++...+..+.|||||++|+-. +.++ .|+++|+.
T Consensus 16 s~dg~~la~~~~---~~~i~iw~~~--~~~~~~~~~l~----gH~~~V~~l~fsp~~~~l~s~-s~D~----~i~vWd~~ 81 (371)
T d1k8kc_ 16 NKDRTQIAICPN---NHEVHIYEKS--GNKWVQVHELK----EHNGQVTGVDWAPDSNRIVTC-GTDR----NAYVWTLK 81 (371)
T ss_dssp CTTSSEEEEECS---SSEEEEEEEE--TTEEEEEEEEE----CCSSCEEEEEEETTTTEEEEE-ETTS----CEEEEEEE
T ss_pred CCCCCEEEEEeC---CCEEEEEECC--CCCEEEEEEec----CCCCCEEEEEECCCCCEEEEE-ECCC----eEEEEeec
Confidence 588998876532 2334566543 34333332111 123457889999999998754 3333 68888988
Q ss_pred CCceece-ee--cceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEeecc-ccceeeeeeecCCCEEEEEEC
Q psy1288 192 TGKEYPE-VL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHLTVN-VAPITSQYITNEGPQFVFKTN 266 (1012)
Q Consensus 192 tg~~~~~-t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~~~~-~~~i~~~~~s~dg~~l~~~tn 266 (1012)
+++..+. .. .......+.|+|||+.|+....+....-. .+.............. ...+....|+|+|..|+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 7765432 22 12335788999999988776643210000 0000011111110000 022334458999998866553
Q ss_pred CCCCCceEEEEeCCCCcc------cCc-------EEeec-cCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCc
Q psy1288 267 KDAPNYRLITIDFDNFAE------SNW-------KTLIE-ENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGK 331 (1012)
Q Consensus 267 ~~~~~~~L~~~dl~~~~~------~~~-------~~l~~-~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~ 331 (1012)
. ..+...++..... ..+ ..+.. ......+..+.+ ++++.++.. ..+ ..+.+|++..++
T Consensus 162 D----~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~d--~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 162 D----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV-SHD--STVCLADADKKM 234 (371)
T ss_dssp T----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-ETT--TEEEEEEGGGTT
T ss_pred C----cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc-ccC--CcceEEeeeccc
Confidence 2 2233333322110 000 01111 111111222222 344555443 333 458889997776
Q ss_pred eeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 332 HLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 332 ~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
....+......+..+.|++|+..|+. .. .....++.++.
T Consensus 235 ~~~~~~~~~~~v~s~~fs~d~~~la~-g~--d~~~~~~~~~~ 273 (371)
T d1k8kc_ 235 AVATLASETLPLLAVTFITESSLVAA-GH--DCFPVLFTYDS 273 (371)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEE-ET--TSSCEEEEEET
T ss_pred ceeeeecccccceeeeecCCCCEEEE-Ec--CCceEEEEeeC
Confidence 65555544445667788998865442 22 23345777775
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=97.75 E-value=1.9e-05 Score=78.98 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
+.+|+|||||++|..||+.++.+++++++. +.+++++|+++|.|...
T Consensus 152 ~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~~----------~~~l~~i~ga~H~f~~~ 198 (218)
T d2fuka1 152 PPAQWLVIQGDADEIVDPQAVYDWLETLEQ----------QPTLVRMPDTSHFFHRK 198 (218)
T ss_dssp CCSSEEEEEETTCSSSCHHHHHHHHTTCSS----------CCEEEEETTCCTTCTTC
T ss_pred cccceeeEecCCCcCcCHHHHHHHHHHccC----------CceEEEeCCCCCCCCCC
Confidence 348999999999999999999988765542 67889999999999764
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.0021 Score=67.02 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=46.4
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
...+..++|||||++||-. +.+| .|.++|+.+++.... .........++|+|||+.|+....+
T Consensus 55 ~~~I~~l~~s~~~~~l~sg-s~Dg----~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 118 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSA-SQDG----KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp SSCEEEEEECTTSSEEEEE-ETTT----EEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETT
T ss_pred CCCEEEEEECCCCCEEEEE-ECCC----ceeeeecccceeEEEEecccccEEeeEeeccceeeeeeccc
Confidence 4467889999999988744 3333 799999999886542 2233345789999999988877644
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=97.71 E-value=4e-05 Score=74.20 Aligned_cols=99 Identities=15% Similarity=0.001 Sum_probs=62.3
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYTQS 511 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~d~ 511 (1012)
.|+ |++||..+... .|.. ....|.++||.++.++.+|.+....... ...+++...++.+.++ ...
T Consensus 3 ~PV-v~vHG~~~~~~--~~~~-l~~~l~~~g~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~i~~~~~~--~~~ 67 (179)
T d1ispa_ 3 NPV-VMVHGIGGASF--NFAG-IKSYLVSQGWSRDKLYAVDFWDKTGTNY---------NNGPVLSRFVQKVLDE--TGA 67 (179)
T ss_dssp CCE-EEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEECCCSCTTCCHH---------HHHHHHHHHHHHHHHH--HCC
T ss_pred CCE-EEECCCCCCHH--HHHH-HHHHHHHcCCeEEEEecCCccccccccc---------hhhhhHHHHHHHHHHh--cCC
Confidence 365 56899754332 3433 4566777899888777776543321111 1123444444444443 234
Q ss_pred CcEEEEecChHHHHHHHHHhhC--CCceeEEEEccC
Q psy1288 512 SRLAIQGGSNGGLLTAACINQR--PDLFGAAIVQVG 545 (1012)
Q Consensus 512 ~~i~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~ 545 (1012)
+++.++|||+||.++..++.+. |++++.+|...+
T Consensus 68 ~~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~ 103 (179)
T d1ispa_ 68 KKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGG 103 (179)
T ss_dssp SCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESC
T ss_pred ceEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECC
Confidence 6899999999999998888765 567888887766
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=97.70 E-value=9.4e-06 Score=81.60 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=43.6
Q ss_pred CCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 815 YPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 815 ~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+|+|++||++|..||+.++.++++.|++.|+ .++|+.|+ .||++..
T Consensus 157 ~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~-------~~~~~~~~-~gH~i~~ 203 (218)
T d1auoa_ 157 RIPALCLHGQYDDVVQNAMGRSAFEHLKSRGV-------TVTWQEYP-MGHEVLP 203 (218)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTC-------CEEEEEES-CSSSCCH
T ss_pred CCCEEEEecCCCCccCHHHHHHHHHHHHHCCC-------CEEEEEEC-CCCccCH
Confidence 49999999999999999999999999999988 99999997 6898863
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.69 E-value=0.00046 Score=73.70 Aligned_cols=114 Identities=20% Similarity=0.175 Sum_probs=73.3
Q ss_pred CCCcEEEEEcCCCCCCCC------CCc-Chh--HHHHHHhCCeEEEEEcCCCCCCC--chhHHhh--h---hcCCCcchH
Q psy1288 430 GNNPCILYGYGGFAVSLQ------PGF-SVT--KIVFLRDFNGIYAIPNIRGGGEY--GERWHDG--G---RLLNKQNVF 493 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~------~~~-~~~--~~~~l~~~G~~v~~~d~RG~g~~--g~~~~~~--~---~~~~~~~~~ 493 (1012)
.+.++||+.|+-.+.... ++| ... --..++-..|-|+++|.-|++.- |..-... + ......-++
T Consensus 37 ~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti 116 (357)
T d2b61a1 37 EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVV 116 (357)
T ss_dssp TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCH
T ss_pred CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCCCCCCCCCCCCcccccchh
Confidence 345789999984333221 222 110 01123334699999999986531 1111000 0 112334568
Q ss_pred hHHHHHHHHHHHcCCCCCCcE-EEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 494 DDFQCAAEYLIASGYTQSSRL-AIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 494 ~D~~a~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.|.+.+-..|+++ ..-+++ +++|+||||..++..+.++|+....+|..++
T Consensus 117 ~D~v~aq~~Ll~~--LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~ 167 (357)
T d2b61a1 117 QDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCS 167 (357)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred HHHHHHHHHHHHH--hCcceEEEEecccHHHHHHHHHHHhhhHHHhhhccccc
Confidence 8998888778765 345677 6889999999999999999999999888877
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.0015 Score=70.26 Aligned_cols=187 Identities=10% Similarity=0.080 Sum_probs=101.3
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-e--cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-L--HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
+...+|||||++||.... + ..|.++|+++++..... + .......++|+|||+.|+-.+.+..
T Consensus 10 It~~~~s~dg~~la~~~~-~----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~---------- 74 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN-N----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN---------- 74 (371)
T ss_dssp CCEEEECTTSSEEEEECS-S----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC----------
T ss_pred eEEEEECCCCCEEEEEeC-C----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCe----------
Confidence 678899999999987633 2 27889999888754322 2 2234678999999998776554321
Q ss_pred ceEEEEee----------ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEe--eccCCCceeeeeE
Q psy1288 236 RSSAYHLT----------VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTL--IEENKDDVLDWAT 303 (1012)
Q Consensus 236 ~~l~~~~~----------~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l--~~~~~~~~~~~~~ 303 (1012)
-.++-... .....+....|+|+++.|+..+.. ....++.++..... +... .......+ ..+.
T Consensus 75 i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d--~~i~i~~~~~~~~~---~~~~~~~~~~~~~v-~~v~ 148 (371)
T d1k8kc_ 75 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQENDW---WVCKHIKKPIRSTV-LSLD 148 (371)
T ss_dssp EEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT--SSEEEEEEETTTTE---EEEEEECTTCCSCE-EEEE
T ss_pred EEEEeecccccccccccccccccccccccccccccceeeccc--Ccceeeeeeccccc---cccccccccccccc-cccc
Confidence 11111110 001234444689999988887643 23556655543321 1111 11111222 2233
Q ss_pred E-ecCCEEEEEEEcCceEEEEEEecCCCce------------------eeeecCCceEEEeecccccCcEEEEEecCCCC
Q psy1288 304 C-VANDKLILSYIHHVKNVMHLHDLASGKH------------------LYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQ 364 (1012)
Q Consensus 304 ~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~------------------~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~ 364 (1012)
+ +++..+ +....++. +.+|+...+.. ........+.+..+.|+|+++.|+.....
T Consensus 149 ~~p~~~~l-~s~s~D~~--v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d--- 222 (371)
T d1k8kc_ 149 WHPNSVLL-AAGSCDFK--CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD--- 222 (371)
T ss_dssp ECTTSSEE-EEEETTSC--EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT---
T ss_pred ccccccce-eccccCcE--EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC---
Confidence 3 343444 44444443 45555532211 01111123446678899999887655432
Q ss_pred CcEEEEEeC
Q psy1288 365 PTIIFHCNI 373 (1012)
Q Consensus 365 p~~l~~~d~ 373 (1012)
..+..+|+
T Consensus 223 -~~i~iwd~ 230 (371)
T d1k8kc_ 223 -STVCLADA 230 (371)
T ss_dssp -TEEEEEEG
T ss_pred -CcceEEee
Confidence 46888888
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=97.66 E-value=1.1e-05 Score=87.23 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=44.2
Q ss_pred HhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 794 YLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 794 ~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++...||+.+.+ ++++|+|+++|..|..++ .+.++|.+|+. +. +..+++-|. +|+.
T Consensus 230 ~w~~~~~~~~~~-------~i~vP~L~i~G~~D~~~~--~~~~~~~~~~~-~~-------~~~liigpw-~H~~ 285 (347)
T d1ju3a2 230 SWQSISLFERLG-------GLATPALITAGWYDGFVG--ESLRTFVAVKD-NA-------DARLVVGPW-SHSN 285 (347)
T ss_dssp HHHTTCCHHHHT-------TCCCCEEEEEEEECTTHH--HHHHHHHHHTT-TS-------CEEEEEEEE-ESSC
T ss_pred hhhcCCHHHHhh-------cCCCCEEEeccccCCCcc--hhHHHHHHhhc-cC-------CceEEEcCc-cccC
Confidence 456778888888 999999999999998654 57889999875 33 788888776 3653
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=97.65 E-value=6.2e-05 Score=79.34 Aligned_cols=102 Identities=17% Similarity=-0.005 Sum_probs=68.6
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
..+.| ||++||.........|. .+..+|.++||.|+.+|++|.+.-. .....+++.+.++++.+..
T Consensus 29 ~~~~P-VvlvHG~~~~~~~~~~~-~~~~~L~~~Gy~v~~~d~~g~g~~d-----------~~~sae~la~~i~~v~~~~- 94 (317)
T d1tcaa_ 29 SVSKP-ILLVPGTGTTGPQSFDS-NWIPLSTQLGYTPCWISPPPFMLND-----------TQVNTEYMVNAITALYAGS- 94 (317)
T ss_dssp SCSSE-EEEECCTTCCHHHHHTT-THHHHHHTTTCEEEEECCTTTTCSC-----------HHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCc-EEEECCCCCCCcchhHH-HHHHHHHhCCCeEEEecCCCCCCCc-----------hHhHHHHHHHHHHHHHHhc-
Confidence 34456 56789954322211122 3456778889999999999755211 1122456677777777653
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCC---ceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPD---LFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~ 545 (1012)
..++|.|+|||+||+++.+++.++|+ ....+|...+
T Consensus 95 -g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~ 133 (317)
T d1tcaa_ 95 -GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133 (317)
T ss_dssp -TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESC
T ss_pred -cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCC
Confidence 34689999999999999999988874 4677777766
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=9.2e-06 Score=85.51 Aligned_cols=132 Identities=13% Similarity=-0.010 Sum_probs=81.9
Q ss_pred hhHHHHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCC-------
Q psy1288 709 TIPVIYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFT------- 774 (1012)
Q Consensus 709 ~~~~~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~------- 774 (1012)
..+++.|+++.... ++.+++ |.|.| +|.++......|++|.+ |.+++.......
T Consensus 103 ~~el~~~i~~~~~~-----d~~r~~i~G~S~G-------G~~A~~~a~~~pd~f~av~~~Sg~~~~~~~~~~~~~~~~~~ 170 (288)
T d1sfra_ 103 TSELPGWLQANRHV-----KPTGSAVVGLSMA-------ASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMG 170 (288)
T ss_dssp HTHHHHHHHHHHCB-----CSSSEEEEEETHH-------HHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHHHHHHH
T ss_pred HHHhHHHHHHhcCC-----CCCceEEEEEccH-------HHHHHHHHHhccccccEEEEecCcccccccccchhhhhhhh
Confidence 45667788877653 234444 77888 66665555556666644 444433221110
Q ss_pred --CCCCCcccCCCCCChhhhhHhHcCCCCCCCCCCCCCCCCCCCceEEEcccCCCCCCC--------------cchHHHH
Q psy1288 775 --IGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQYPATLLMTADHDDRVSP--------------VHSLKFA 838 (1012)
Q Consensus 775 --~~~~~~~~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~--------------~~~~~~~ 838 (1012)
........+|.++. ..+...+|+.+++. .....+++++.+|..|..++. .++.+|.
T Consensus 171 ~~~~~~~~~~~g~~~~----~~~~~~~p~~~~~~----~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~~l~ 242 (288)
T d1sfra_ 171 DAGGYKASDMWGPKED----PAWQRNDPLLNVGK----LIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQ 242 (288)
T ss_dssp HTTSCCHHHHHCSTTS----THHHHSCTTTTHHH----HHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHhhhcCCcch----hhhHhcCHHHHHHH----hhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHHHHH
Confidence 00000011233332 24567889888750 002347899999999998885 4678899
Q ss_pred HHHHHHhcCCCCCCCCEEEEEeCCCC-CCC
Q psy1288 839 ATLQEKLRDYPHQTNPLLIRIETKAG-HGG 867 (1012)
Q Consensus 839 ~~l~~~~~~~~~~~~~~~~~~~~~~g-H~~ 867 (1012)
.+|++.|+ +..++.++++| |.+
T Consensus 243 ~~l~~~g~-------~~~~~~~~~~G~H~w 265 (288)
T d1sfra_ 243 DAYNAGGG-------HNGVFDFPDSGTHSW 265 (288)
T ss_dssp HHHHHTTC-------CSEEEECCSCCCSSH
T ss_pred HHHHHCCC-------CeEEEEECCCCccCh
Confidence 99999999 99999999875 975
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=97.64 E-value=0.0014 Score=72.57 Aligned_cols=200 Identities=12% Similarity=0.109 Sum_probs=100.3
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
.+.+.++++...+ . ..+.+.+...++...-+.. | ..+...++||||++|+ +.+++| .|.++|+++
T Consensus 28 ~~~~~~~~v~~~d-~--g~v~v~D~~t~~v~~~~~~------g-~~~~~v~fSpDG~~l~-~~s~dg----~v~~~d~~t 92 (432)
T d1qksa2 28 WDLENLFSVTLRD-A--GQIALIDGSTYEIKTVLDT------G-YAVHISRLSASGRYLF-VIGRDG----KVNMIDLWM 92 (432)
T ss_dssp CCGGGEEEEEETT-T--TEEEEEETTTCCEEEEEEC------S-SCEEEEEECTTSCEEE-EEETTS----EEEEEETTS
T ss_pred CCCCcEEEEEEcC-C--CEEEEEECCCCcEEEEEeC------C-CCeeEEEECCCCCEEE-EEcCCC----CEEEEEeeC
Confidence 4555566655543 2 2455566666554443431 2 2467889999999996 445544 789999998
Q ss_pred Cceece-eec--c---eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEee-----ccc------cceeeeeee
Q psy1288 193 GKEYPE-VLH--R---LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLT-----VNV------APITSQYIT 255 (1012)
Q Consensus 193 g~~~~~-t~~--~---~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~-----~~~------~~i~~~~~s 255 (1012)
++.... .+. . ....++.|||||++|+.+.......-.-+.... ++..... ... ....+..++
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 171 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCCCceeEEEEC
Confidence 874321 111 1 112445678899998766532110000000000 1111110 000 111123478
Q ss_pred cCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeee
Q psy1288 256 NEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYT 335 (1012)
Q Consensus 256 ~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~ 335 (1012)
|+|..+++.... ...+..++..+.+......+ ... ..........+++.+++.... ...+.+++..+++....
T Consensus 172 ~dg~~~~vs~~~---~~~i~~~d~~~~~~~~~~~i-~~g-~~~~~~~~spdg~~~~va~~~--~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 172 HYRPEFIVNVKE---TGKILLVDYTDLNNLKTTEI-SAE-RFLHDGGLDGSHRYFITAANA--RNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp SSSSEEEEEETT---TTEEEEEETTCSSEEEEEEE-ECC-SSEEEEEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEcc---CCeEEEEEccCCCcceEEEE-ccc-CccccceECCCCCEEEEeccc--cceEEEeecccceEEEE
Confidence 888888877643 34677777765441111111 111 222222233454556555433 24677778766654433
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=97.63 E-value=7.3e-06 Score=87.01 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCCchh
Q psy1288 800 PLHNIQGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPTTK 873 (1012)
Q Consensus 800 p~~~v~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~ 873 (1012)
++.+++ +++.|+||+||++|..||+.++.+++..++.. ..+++++++.||.+.+..+-
T Consensus 189 ~~~~~~-------~i~~PvLii~G~~D~~V~~~~~~~l~~~i~s~---------~~kl~~~~g~~H~l~e~~~~ 246 (302)
T d1thta_ 189 TLDKVA-------NTSVPLIAFTANNDDWVKQEEVYDMLAHIRTG---------HCKLYSLLGSSHDLGENLVV 246 (302)
T ss_dssp HHHHHT-------TCCSCEEEEEETTCTTSCHHHHHHHHTTCTTC---------CEEEEEETTCCSCTTSSHHH
T ss_pred HHHHHh-------hcCCCEEEEEeCCCCccCHHHHHHHHHhCCCC---------CceEEEecCCCcccccChHH
Confidence 445666 78899999999999999999999998877643 57999999999998865443
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=97.62 E-value=8.9e-05 Score=78.94 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCcEEEEEcCCCCCCCCC----CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQP----GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIA 505 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~----~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~ 505 (1012)
.++|+| ++||..+..... .|. .....|.++||.|+++|++|.+.... .....+++.+.++.+++
T Consensus 7 ~k~Pvv-lvHG~~g~~~~~~~~~~~~-~~~~~L~~~G~~V~~~~~~g~g~s~~----------~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 7 TRYPVI-LVHGLAGTDKFANVVDYWY-GIQSDLQSHGAKVYVANLSGFQSDDG----------PNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CSSCEE-EECCTTBSSEETTTEESST-THHHHHHHTTCCEEECCCBCSSCTTS----------TTSHHHHHHHHHHHHHH
T ss_pred CCCCEE-EECCCCCCcchhhhhhhHH-HHHHHHHHCCCEEEEecCCCCCCCCC----------CcccHHHHHHHHHHHHH
Confidence 456755 579965433211 233 34567777899999999998764211 11123455555554444
Q ss_pred cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 506 SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 506 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
. ...+++.++|||+||.++..++.++|++++.++...+
T Consensus 75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~ 112 (319)
T d1cvla_ 75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112 (319)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECC
Confidence 3 2457899999999999999999999999999888766
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=97.57 E-value=0.0023 Score=68.24 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=71.9
Q ss_pred CCCcEEEEEcCCCCCCCC----------CCc-Chh--HHHHHHhCCeEEEEEcCCCCCCC--chhHHhhh-----hcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQ----------PGF-SVT--KIVFLRDFNGIYAIPNIRGGGEY--GERWHDGG-----RLLNK 489 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~----------~~~-~~~--~~~~l~~~G~~v~~~d~RG~g~~--g~~~~~~~-----~~~~~ 489 (1012)
.+.++||+.|+-.+.... ++| +.. --..++-.-|-|+++|.-|++.- |..-.... .....
T Consensus 40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP 119 (362)
T d2pl5a1 40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFP 119 (362)
T ss_dssp TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSC
T ss_pred CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccCccccccccccccCcCCc
Confidence 345799999984433211 222 110 01123344699999999986532 11110000 01123
Q ss_pred cchHhHHHHHHHHHHHcCCCCCCcEE-EEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 490 QNVFDDFQCAAEYLIASGYTQSSRLA-IQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 490 ~~~~~D~~a~~~~l~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.-++.|++++-.-|++. ..-+++. |+|+||||..++..+.++|+.+..+|..++
T Consensus 120 ~~t~~D~v~~~~~ll~~--LGI~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~ 174 (362)
T d2pl5a1 120 FVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAS 174 (362)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHH--hCcCeeEEEeehhHHHHHHHHHHHhCchHhhhhccccc
Confidence 45678988877766665 3345666 889999999999999999999999998887
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.57 E-value=0.00011 Score=76.69 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=67.0
Q ss_pred CCCCcEEEEEcCCCCCCCC--C-CcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHH
Q psy1288 429 DGNNPCILYGYGGFAVSLQ--P-GFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIA 505 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~--~-~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~ 505 (1012)
..++| ||++||-.+.... . .|.. ....|.++|+.|+.++++|.+. .+... +++...++.+.+
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~-i~~~L~~~G~~v~~~~~~~~~~---~~~~a----------~~l~~~i~~~~~ 69 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFG-IPSALRRDGAQVYVTEVSQLDT---SEVRG----------EQLLQQVEEIVA 69 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTT-HHHHHHHTTCCEEEECCCSSSC---HHHHH----------HHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHH-HHHHHHhCCCEEEEeCCCCCCC---cHHHH----------HHHHHHHHHHHH
Confidence 35678 6788995443221 1 2333 4566777899999999997542 33221 233333333333
Q ss_pred cCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 506 SGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 506 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
. ...+++.++|||+||+.+..++.++|++++.++....
T Consensus 70 ~--~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~t 107 (285)
T d1ex9a_ 70 L--SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107 (285)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred H--cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECC
Confidence 2 2346899999999999999999999999998887765
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=9.9e-05 Score=74.88 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCCCCCCCcChhHHHHHHhC--CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 432 NPCILYGYGGFAVSLQPGFSVTKIVFLRDF--NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 432 ~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
.| ||++||..+... .|... ...|.+. ||.|+++|.||.|..... ....++++...+..+++..
T Consensus 3 ~P-vvllHG~~~~~~--~~~~~-~~~l~~~~~~~~v~~~d~~G~g~S~~~---------~~~~~~~~~~~l~~~l~~l-- 67 (268)
T d1pjaa_ 3 KP-VIVVHGLFDSSY--SFRHL-LEYINETHPGTVVTVLDLFDGRESLRP---------LWEQVQGFREAVVPIMAKA-- 67 (268)
T ss_dssp CC-EEEECCTTCCGG--GGHHH-HHHHHHHSTTCCEEECCSSCSGGGGSC---------HHHHHHHHHHHHHHHHHHC--
T ss_pred CC-EEEECCCCCCHH--HHHHH-HHHHHhhCCCeEEEEeCCCCCCCCCCc---------cccCHHHHHHHHHHHHhcc--
Confidence 45 456899765443 44433 3344433 799999999997643211 1123445555555555442
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCC-ceeEEEEccC
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPD-LFGAAIVQVG 545 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~ 545 (1012)
. +++.++|||+||.++..++.++|+ +++..+...+
T Consensus 68 ~-~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 68 P-QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp T-TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred C-CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 3 789999999999999999999998 4777776654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=97.54 E-value=0.0017 Score=71.86 Aligned_cols=193 Identities=11% Similarity=0.017 Sum_probs=99.4
Q ss_pred CCCCcEE-EEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc-cCCCCCceEEEEe
Q psy1288 165 SEDGKTL-AYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK-KHSKKNRSSAYHL 242 (1012)
Q Consensus 165 SPDGk~i-Ay~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~-~~~~~~~~l~~~~ 242 (1012)
..|.+.+ +.+.+..| .|.++|+++++.+.....+.....++|||||++||....+....-. ....+ .+.....
T Consensus 27 ~~~~~~~~~v~~~d~g----~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~-~~~~~~i 101 (432)
T d1qksa2 27 DWDLENLFSVTLRDAG----QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEI 101 (432)
T ss_dssp CCCGGGEEEEEETTTT----EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEE
T ss_pred cCCCCcEEEEEEcCCC----EEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC-ceEEEEE
Confidence 3444434 34444433 7999999999987533333345789999999999765433210000 01111 1111111
Q ss_pred eccc--cce-eeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccC-----------CCceeeeeEEecCC
Q psy1288 243 TVNV--API-TSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEEN-----------KDDVLDWATCVAND 308 (1012)
Q Consensus 243 ~~~~--~~i-~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ 308 (1012)
.... .++ ..+.++|||++|++.... ...+..+|.++++. ...+... ...........++.
T Consensus 102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~---~~~v~i~d~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~ 175 (432)
T d1qksa2 102 KIGSEARSIETSKMEGWEDKYAIAGAYW---PPQYVIMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 175 (432)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEE---TTEEEEEETTTCCE---EEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred ecCCCCCCeEEecccCCCCCEEEEEcCC---CCeEEEEeCccccc---eeeeccCCccccceeccCCCceeEEEECCCCC
Confidence 1110 111 123478999999887643 24566677766541 1111110 01111111223334
Q ss_pred EEEEEEEcCceEEEEEEecCCCceeeeecCC-ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 309 KLILSYIHHVKNVMHLHDLASGKHLYTFPLD-VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+++..... .++.+++..+++.......+ ......+.++|||+.+++..... ..+..+|.
T Consensus 176 ~~~vs~~~~--~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~---~~v~v~d~ 236 (432)
T d1qksa2 176 EFIVNVKET--GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR---NKLVVIDT 236 (432)
T ss_dssp EEEEEETTT--TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG---TEEEEEET
T ss_pred EEEEEEccC--CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecccc---ceEEEeec
Confidence 555444332 46777887666543332222 12345678899999877765442 35777787
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.004 Score=65.65 Aligned_cols=194 Identities=11% Similarity=0.016 Sum_probs=104.7
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-e-ee----cceeeeeeEEeeCCCeEEEEecCCCCCccc
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-E-VL----HRLKFVSIAWTHDHKGVFYSNQEPKSKSKK 230 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~-t~----~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~ 230 (1012)
..+..++|||||++||-.. +| .|.|+|+++++... . .. .......++|+|||+.|+....++...-.
T Consensus 52 ~~V~~v~fs~~g~~latg~--dg----~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iw- 124 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTGG--KG----CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW- 124 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC--BS----EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE-
T ss_pred CcEEEEEECCCCCEEEEEE--CC----EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccc-
Confidence 3577899999999998532 22 58999998765322 1 11 11235789999999988766544210000
Q ss_pred CCC-CCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCC
Q psy1288 231 HSK-KNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VAND 308 (1012)
Q Consensus 231 ~~~-~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~ 308 (1012)
+.. ...++..........+....+++++..++..+. +..+...++.+.+. .......... +..+.+ .++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d~~i~~~~~~~~~~---~~~~~~~~~~-v~~l~~s~~~~ 196 (337)
T d1gxra_ 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS----DGNIAVWDLHNQTL---VRQFQGHTDG-ASCIDISNDGT 196 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEE---EEEECCCSSC-EEEEEECTTSS
T ss_pred ccccccccccccccccccccccccccccccccccccc----cccccccccccccc---cccccccccc-ccccccccccc
Confidence 000 000111110011122333458888887776653 34577777766541 1122211122 223333 2334
Q ss_pred EEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 309 KLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 309 ~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.++.. ..+ ..+.+|++.+++....+.. ...+..+.++|+++.++..... ..+..+|+
T Consensus 197 ~~~~~-~~d--~~v~i~d~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~~~~d----~~i~i~d~ 253 (337)
T d1gxra_ 197 KLWTG-GLD--NTVRSWDLREGRQLQQHDF-TSQIFSLGYCPTGEWLAVGMES----SNVEVLHV 253 (337)
T ss_dssp EEEEE-ETT--SEEEEEETTTTEEEEEEEC-SSCEEEEEECTTSSEEEEEETT----SCEEEEET
T ss_pred ccccc-ccc--ccccccccccceeeccccc-ccceEEEEEcccccccceeccc----cccccccc
Confidence 44443 333 4578889877765544433 2345677889999887765433 35788888
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.01 Score=62.41 Aligned_cols=191 Identities=10% Similarity=0.026 Sum_probs=106.5
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec-ceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH-RLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~-~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
.+....|+||+..++.... + ..|.++|+.+++....... ......++|++|++.++....+....- -+.....
T Consensus 143 ~v~~~~~~~~~~~l~s~~~-d----~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i-~d~~~~~ 216 (337)
T d1gxra_ 143 ACYALAISPDSKVCFSCCS-D----GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS-WDLREGR 216 (337)
T ss_dssp CEEEEEECTTSSEEEEEET-T----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE-EETTTTE
T ss_pred ccccccccccccccccccc-c----ccccccccccccccccccccccccccccccccccccccccccccccc-cccccce
Confidence 4667889999999875432 2 2689999999886543332 223567899999998887765421000 0000011
Q ss_pred eEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEE
Q psy1288 237 SSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYI 315 (1012)
Q Consensus 237 ~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~ 315 (1012)
.+.... ....+....|+|+++.|+..+. ...+...++..++. .....+ ...+..+.+ .+++.+ ++..
T Consensus 217 ~~~~~~--~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~~~---~~~~~~--~~~i~~v~~s~~g~~l-~s~s 284 (337)
T d1gxra_ 217 QLQQHD--FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDK---YQLHLH--ESCVLSLKFAYCGKWF-VSTG 284 (337)
T ss_dssp EEEEEE--CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSSCE---EEECCC--SSCEEEEEECTTSSEE-EEEE
T ss_pred eecccc--cccceEEEEEcccccccceecc----cccccccccccccc---cccccc--ccccceEEECCCCCEE-EEEe
Confidence 111000 0123334458899988887664 34577777766541 122222 222333444 343444 4444
Q ss_pred cCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 316 HHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 316 ~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+ ..|.+|++.+++....+.. ...+..+.|+|+++.|+..... ..|..+|+
T Consensus 285 ~D--g~i~iwd~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~t~s~D----~~I~vWdl 335 (337)
T d1gxra_ 285 KD--NLLNAWRTPYGASIFQSKE-SSSVLSCDISVDDKYIVTGSGD----KKATVYEV 335 (337)
T ss_dssp TT--SEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETT----SCEEEEEE
T ss_pred CC--CeEEEEECCCCCEEEEccC-CCCEEEEEEeCCCCEEEEEeCC----CeEEEEEE
Confidence 44 3588899977765444332 3456678899998876543321 23555554
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.51 E-value=0.0045 Score=63.63 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=103.5
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee--cceeeeeeEEeeCCCeEEEEecCCCC-----Cc
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL--HRLKFVSIAWTHDHKGVFYSNQEPKS-----KS 228 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~--~~~~~~~~~WSpDG~~l~y~~~~~~~-----~g 228 (1012)
...+..++|||||++||- .+.+| .|.++|+++|+...... .......+.|+|||+.++ ...+... .+
T Consensus 12 ~~~V~~l~~s~dg~~l~s-~s~Dg----~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~d~~v~~~~~~~ 85 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFS-ADAEG----HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSWDDHLKVVPAGG 85 (299)
T ss_dssp SSCEEEEEECTTSSEEEE-EETTS----CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EETTTEEEEECSSS
T ss_pred CCCcEEEEECCCCCEEEE-EcCCC----eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-ccceeeEEEeccCC
Confidence 456889999999999874 44433 68999999988654321 123357899999997443 3322110 00
Q ss_pred c-cC---------CCC--------CceEEEEeecc------c---------cceeeeeeecCCCEEEEEECCCCCCceEE
Q psy1288 229 K-KH---------SKK--------NRSSAYHLTVN------V---------APITSQYITNEGPQFVFKTNKDAPNYRLI 275 (1012)
Q Consensus 229 ~-~~---------~~~--------~~~l~~~~~~~------~---------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~ 275 (1012)
. .. ... +..++.....+ . .......++|+++.|++.+. +..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~ 161 (299)
T d1nr0a2 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ----DSKVH 161 (299)
T ss_dssp SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET----TSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccc
Confidence 0 00 000 00000000000 0 11123357888887777664 34566
Q ss_pred EEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeee---cCCceEEEeeccccc
Q psy1288 276 TIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTF---PLDVGTIVGFSGKKK 351 (1012)
Q Consensus 276 ~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l---~~~~~~v~~~~~spd 351 (1012)
..|+.+...... ....+ ...+ ..+.+ .+++.++ ....++ .+.+|++.++.....+ ......+..+.|+|+
T Consensus 162 ~~d~~~~~~~~~-~~~~~-~~~i-~~~~~~~~~~~l~-~~~~d~--~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 162 VYKLSGASVSEV-KTIVH-PAEI-TSVAFSNNGAFLV-ATDQSR--KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp EEEEETTEEEEE-EEEEC-SSCE-EEEEECTTSSEEE-EEETTS--CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred cccccccccccc-ccccc-cccc-ccccccccccccc-cccccc--cccccccccccccccccccccccccccccccccc
Confidence 677655431111 11122 1222 23333 3434444 333333 5788888665433222 222345677889999
Q ss_pred CcEEEEEecCCCCCcEEEEEeCC
Q psy1288 352 YSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 352 g~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
++.|+..... ..+..+|+.
T Consensus 236 ~~~l~sgs~d----g~i~iwd~~ 254 (299)
T d1nr0a2 236 NVRLATGSLD----NSVIVWNMN 254 (299)
T ss_dssp SSEEEEEETT----SCEEEEETT
T ss_pred ccceEEEcCC----CEEEEEECC
Confidence 9877654432 358888883
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=97.51 E-value=1.6e-05 Score=87.17 Aligned_cols=194 Identities=9% Similarity=0.022 Sum_probs=106.4
Q ss_pred CCCCCcEEEEeeCC-----CCCC--ChHHHHHHHHHHHhhhccCCCCCCcEEEEEeCCCCCCCCCcc-------------
Q psy1288 643 GKQYPATLLMTADH-----DDRV--SPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKPT------------- 702 (1012)
Q Consensus 643 ~~~~P~vLiihG~~-----D~~v--~~~~s~~~~~~L~~~~~~~~~~~~~~~l~~~p~~gHg~~~~~------------- 702 (1012)
..++|.||+.|+.. +... ..........+..+. .+++++..+.+|..+.+..+
T Consensus 47 ~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~-------~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~ 119 (381)
T d1mpxa2 47 AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVE-------GGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPS 119 (381)
T ss_dssp CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHH-------TTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCS
T ss_pred CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHh-------CCCEEEEEecCccCCCCCceeccchhhhhcccc
Confidence 35799777777531 1111 111122222344445 78999999988744432211
Q ss_pred -ccchhhhhHHHHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCCC
Q psy1288 703 -TKQFPLTIPVIYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKFT 774 (1012)
Q Consensus 703 -~~~~~~~~~~~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~~ 774 (1012)
.+...+..++++|+.++.. .+..+++ |.||| +++++.+++..+..++| |++|+..+....
T Consensus 120 ~~~~~~D~~~~i~w~~~~~~-----~~~~~vg~~G~Syg-------G~~~~~~a~~~~~~l~a~v~~~~~~d~~~~~~~~ 187 (381)
T d1mpxa2 120 EVDHATDAWDTIDWLVKNVS-----ESNGKVGMIGSSYE-------GFTVVMALTNPHPALKVAVPESPMIDGWMGDDWF 187 (381)
T ss_dssp SCCHHHHHHHHHHHHHHHCT-----TEEEEEEEEEETHH-------HHHHHHHHTSCCTTEEEEEEESCCCCTTTTSSSE
T ss_pred hhHHHHHHHHHHHHHhhcCC-----cCccceeeecccHH-------HHHHHHHHhccccccceeeeeccccccccccccc
Confidence 1235677888889987732 2234555 99999 66665555566665544 666654331110
Q ss_pred -CCCCCcc----------cCCCC--------CCh-------------------------------hhhhHhHcCCCCCCC
Q psy1288 775 -IGYFWES----------DYGSP--------ANS-------------------------------SQFEYLLGYSPLHNI 804 (1012)
Q Consensus 775 -~~~~~~~----------~~g~~--------~~~-------------------------------~~~~~~~~~Sp~~~v 804 (1012)
.+..+.. ..+.+ ++. ..-+++...||..+.
T Consensus 188 ~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~ 267 (381)
T d1mpxa2 188 NYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQALDKVM 267 (381)
T ss_dssp ETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCHHHHH
T ss_pred cCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCccchhhhcCchhhh
Confidence 0100000 00000 000 000223344554332
Q ss_pred CCCCCCCCCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 805 QGPNELKGKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 805 ~~~~~~~~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
+ ..+|+.|+|+++|..|.-.+. .+.+.+++++.+.. .+.+..|++-|. +|+
T Consensus 268 ~-----~~~i~vP~l~i~G~~d~~~~~-~~~~~~~~~~~~~~----~~~~~~LviGPw-~H~ 318 (381)
T d1mpxa2 268 A-----RTPLKVPTMWLQGLWDQEDMW-GAIHSYAAMEPRDK----RNTLNYLVMGPW-RHS 318 (381)
T ss_dssp H-----TSCCCSCEEEEEETTCSSCSS-HHHHHHHHHGGGCT----TSSSEEEEEESC-CTT
T ss_pred h-----hccccCceEEEeccccCCccc-cHHHHHHHHHHhcc----ccCCceEEEecC-cCC
Confidence 2 126889999999999975544 47788888887643 244899999887 586
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=97.48 E-value=4e-05 Score=76.82 Aligned_cols=81 Identities=12% Similarity=0.004 Sum_probs=53.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
++.+.|+++||..+... .|.. ....|. +|.|+.++++|.++ ..+++.+.+..+.
T Consensus 15 ~~~~~l~~lhg~~g~~~--~~~~-la~~L~--~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~----- 68 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYGL--MYQN-LSSRLP--SYKLCAFDFIEEED----------------RLDRYADLIQKLQ----- 68 (230)
T ss_dssp TCSEEEEEECCTTCCGG--GGHH-HHHHCT--TEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----
T ss_pred CCCCeEEEEcCCCCCHH--HHHH-HHHHCC--CCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----
Confidence 45689999999876543 3433 344453 79999999987542 2344444443221
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCc
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDL 536 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~ 536 (1012)
....+.++|||+||.++..++.+.|++
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~ 95 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQ 95 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhh
Confidence 235688999999999998888765543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.39 E-value=0.0017 Score=69.86 Aligned_cols=221 Identities=7% Similarity=-0.052 Sum_probs=114.0
Q ss_pred CCCeeeCCEEEEEEEcC-----CCCeeEEEEEeCCCCceEEEcC-CCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCce
Q psy1288 109 SSPQRQGDHYFFFHNTG-----LQNHSVMYIQDSLDGEARVFLD-PNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDW 182 (1012)
Q Consensus 109 s~p~~dG~~~yy~~~~~-----~~~~~~l~~~~~~~g~~~~L~D-~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~ 182 (1012)
..++|||+++|+..... +.....|++.+..+++....+. +.............+.||||||+|++.....+
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~--- 146 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS--- 146 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS---
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC---
Confidence 34569999999876521 1223457777776665433222 11100000012236899999999987654433
Q ss_pred EEEEEEECCCCceecee-ecc-------eeeeeeEEeeCCCeEEEEecCCCCCcc---------cC-------CCCCceE
Q psy1288 183 TSMHFKDVATGKEYPEV-LHR-------LKFVSIAWTHDHKGVFYSNQEPKSKSK---------KH-------SKKNRSS 238 (1012)
Q Consensus 183 ~~L~v~dl~tg~~~~~t-~~~-------~~~~~~~WSpDG~~l~y~~~~~~~~g~---------~~-------~~~~~~l 238 (1012)
.|+++|+++++..... ... .....+.+++||+.+++.......... .+ .......
T Consensus 147 -~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 147 -AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp -CEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred -eEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence 6889999999865421 111 112346778999877666432211000 00 0000111
Q ss_pred EEEe---------eccc---------------------cceeeeeeecCCCEEEEEECCCC-----CCceEEEEeCCCCc
Q psy1288 239 AYHL---------TVNV---------------------APITSQYITNEGPQFVFKTNKDA-----PNYRLITIDFDNFA 283 (1012)
Q Consensus 239 ~~~~---------~~~~---------------------~~i~~~~~s~dg~~l~~~tn~~~-----~~~~L~~~dl~~~~ 283 (1012)
++.. ..+. .+.....++++++.+|+....+. ....+..+|..+++
T Consensus 226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence 1110 0000 01112357889999998875321 23568888987764
Q ss_pred ccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC
Q psy1288 284 ESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD 339 (1012)
Q Consensus 284 ~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~ 339 (1012)
. ...+ .. ......+.+ .|++.+++..... ...|++||..+|+....++.+
T Consensus 306 ~--~~~~-~~--~~~~~~~a~spDG~~~ly~s~~~-~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 306 T--SGPI-SN--GHDSDAIIAAQDGASDNYANSAG-TEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp E--EECC-EE--EEEECEEEECCSSSCEEEEEETT-TTEEEEEESSSCEEEEECCCC
T ss_pred E--eEEe-cC--CCceeEEEECCCCCEEEEEEeCC-CCeEEEEECCCCCEEEEEECC
Confidence 1 1111 11 112222333 3555444333332 246999999899877766644
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.38 E-value=0.0033 Score=65.77 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=41.5
Q ss_pred EEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecc-eeeeeeEEeeCCCeEEEEec
Q psy1288 162 YSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHR-LKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 162 ~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~-~~~~~~~WSpDG~~l~y~~~ 222 (1012)
+++|++|++++..... + +|.++|+++++.+.. .+.. ....+++|||||+.++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~-~----~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~ 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYP-N----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59 (346)
T ss_dssp CCCCTTCEEEEEEETT-T----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccCCCCCcEEEEEcCC-C----EEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC
Confidence 6799999999875543 2 899999999987642 2332 23468999999998876653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.36 E-value=0.038 Score=56.98 Aligned_cols=229 Identities=15% Similarity=0.129 Sum_probs=131.1
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVAT 192 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~t 192 (1012)
++.+.+||+--. ...|++.+..++..+++--+ ...+...+.+||+.++- . .. .|+++|.++
T Consensus 27 ~~~~~l~wvDi~----~~~I~r~d~~~g~~~~~~~~--------~~~~~i~~~~dg~l~va-~-~~-----gl~~~d~~t 87 (295)
T d2ghsa1 27 PASGTAWWFNIL----ERELHELHLASGRKTVHALP--------FMGSALAKISDSKQLIA-S-DD-----GLFLRDTAT 87 (295)
T ss_dssp TTTTEEEEEEGG----GTEEEEEETTTTEEEEEECS--------SCEEEEEEEETTEEEEE-E-TT-----EEEEEETTT
T ss_pred CCCCEEEEEECC----CCEEEEEECCCCeEEEEECC--------CCcEEEEEecCCCEEEE-E-eC-----ccEEeeccc
Confidence 446788886432 35799998877765544221 23567788899977653 2 21 599999999
Q ss_pred Cceeceee-----cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc-----cce---eeeeeecCCC
Q psy1288 193 GKEYPEVL-----HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV-----API---TSQYITNEGP 259 (1012)
Q Consensus 193 g~~~~~t~-----~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~-----~~i---~~~~~s~dg~ 259 (1012)
|+...+.. ...........|+|+ |++....... ......+|+...+. .++ ....|+++++
T Consensus 88 g~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~------~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~ 160 (295)
T d2ghsa1 88 GVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKA------ETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGT 160 (295)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTC------CTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSC
T ss_pred ceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccc------cccceeEeeecCCcEEEEeeccCCcceeeecCCCc
Confidence 98754321 122346678889996 6666532110 00111222221110 111 1335899999
Q ss_pred EEEEEECCCCCCceEEEEeCCCCc--ccCcEEe-e-ccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeee
Q psy1288 260 QFVFKTNKDAPNYRLITIDFDNFA--ESNWKTL-I-EENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYT 335 (1012)
Q Consensus 260 ~l~~~tn~~~~~~~L~~~dl~~~~--~~~~~~l-~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~ 335 (1012)
.+|+.-.. ...|++++++... ...-..+ + ..........+.....+.|++..... .+|.+++. +|+....
T Consensus 161 ~l~~~dt~---~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~--g~V~~~dp-~G~~~~~ 234 (295)
T d2ghsa1 161 TGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE--GAVDRYDT-DGNHIAR 234 (295)
T ss_dssp EEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--TEEEEECT-TCCEEEE
T ss_pred eEEEeecc---cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC--CceEEecC-CCcEeeE
Confidence 99998643 4678888765321 1011111 1 11122233444444435677765544 47889998 6888888
Q ss_pred ecCCceEEEeecc-cccCcEEEEEecCCCC----------CcEEEEEeC
Q psy1288 336 FPLDVGTIVGFSG-KKKYSEIFYSFMSFLQ----------PTIIFHCNI 373 (1012)
Q Consensus 336 l~~~~~~v~~~~~-spdg~~l~~~~ss~~~----------p~~l~~~d~ 373 (1012)
+..|...++...| -+|.++|+++..+... ...||.+++
T Consensus 235 i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~p~~G~l~~~~~ 283 (295)
T d2ghsa1 235 YEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHGLTFELGI 283 (295)
T ss_dssp EECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred ecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccCCCCceEEEEcC
Confidence 8887544555555 3788999998655322 246777766
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=0.011 Score=62.82 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=102.4
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-------------------cceeeeeeEEeeCCCeE
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-------------------HRLKFVSIAWTHDHKGV 217 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-------------------~~~~~~~~~WSpDG~~l 217 (1012)
..+..++|||||++||-+. +| .|.++|+.+++...... .......++|+|||+.|
T Consensus 63 ~~V~~l~fs~dg~~lasg~--d~----~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC--NK----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC--BS----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEe--CC----eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 4578899999999988542 22 68899998887542110 01124678999999988
Q ss_pred EEEecCCCCCcccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCc
Q psy1288 218 FYSNQEPKSKSKKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDD 297 (1012)
Q Consensus 218 ~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~ 297 (1012)
+-...++...-. +... .+...........+....+++++..++..+. ...+...|..+.. ........ ..
T Consensus 137 ~s~~~dg~v~i~-~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~---~~~~~~~~-~~ 206 (388)
T d1erja_ 137 ATGAEDRLIRIW-DIEN-RKIVMILQGHEQDIYSLDYFPSGDKLVSGSG----DRTVRIWDLRTGQ---CSLTLSIE-DG 206 (388)
T ss_dssp EEEETTSCEEEE-ETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTE---EEEEEECS-SC
T ss_pred eecccccccccc-cccc-ccccccccccccccccccccccccccccccc----ceeeeeeeccccc---cccccccc-cc
Confidence 766544210000 0000 0111111001123334457788877776653 3456666665543 11111111 22
Q ss_pred eeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-------ceEEEeecccccCcEEEEEecCCCCCcEEEE
Q psy1288 298 VLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-------VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFH 370 (1012)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-------~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~ 370 (1012)
.........++.+++....++ .+.+++..++.....+... ...+..+.++|+++.|+..... ..+..
T Consensus 207 ~~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----~~i~i 280 (388)
T d1erja_ 207 VTTVAVSPGDGKYIAAGSLDR--AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD----RSVKL 280 (388)
T ss_dssp EEEEEECSTTCCEEEEEETTS--CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT----SEEEE
T ss_pred cccccccCCCCCeEEEEcCCC--eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC----CcEEE
Confidence 222222222233344444443 4778888777654443321 2446778899999877654432 35777
Q ss_pred EeC
Q psy1288 371 CNI 373 (1012)
Q Consensus 371 ~d~ 373 (1012)
+|+
T Consensus 281 wd~ 283 (388)
T d1erja_ 281 WNL 283 (388)
T ss_dssp EEC
T ss_pred Eec
Confidence 887
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.27 E-value=0.0018 Score=68.56 Aligned_cols=59 Identities=8% Similarity=-0.067 Sum_probs=42.9
Q ss_pred EECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEec
Q psy1288 163 SFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 163 ~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
..||||++++.+....+....++|++|+++|+.+.. +.......++|||||+.|++...
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-~~~g~~~~~a~SpDg~~l~v~~~ 66 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-IDGGFLPNPVVADDGSFIAHAST 66 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-EEECSSCEEEECTTSSCEEEEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-EECCCCCceEEcCCCCEEEEEeC
Confidence 569999999555444445557999999999987653 33223356899999999887653
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=97.18 E-value=0.0023 Score=68.54 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=73.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChh---HHHHHHhCCeEEEEEcCCCCCCC--chhHHh---hhh----cCCCcchHhHHH
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVT---KIVFLRDFNGIYAIPNIRGGGEY--GERWHD---GGR----LLNKQNVFDDFQ 497 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~---~~~~l~~~G~~v~~~d~RG~g~~--g~~~~~---~~~----~~~~~~~~~D~~ 497 (1012)
.+.++||+.|+-.+.+...+|-.. --..++-..|-|+++|.-|++.- |..-.. .+. .....-++.|.+
T Consensus 42 ~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~v 121 (376)
T d2vata1 42 SRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDV 121 (376)
T ss_dssp TSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHH
T ss_pred CCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCCcCCCCCCCCCcccccCCcccccCCcchhHHHH
Confidence 456899999986554433333111 01223445799999999987521 111100 000 123345678988
Q ss_pred HHHHHHHHcCCCCCCcE-EEEecChHHHHHHHHHhhCCCceeEEEEccCC
Q psy1288 498 CAAEYLIASGYTQSSRL-AIQGGSNGGLLTAACINQRPDLFGAAIVQVGN 546 (1012)
Q Consensus 498 a~~~~l~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 546 (1012)
.+-..|++. ..-+++ +|+|+||||..++..+.++|+....+|..++.
T Consensus 122 ~aq~~ll~~--LGI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~ 169 (376)
T d2vata1 122 RIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATS 169 (376)
T ss_dssp HHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCC
T ss_pred HHHHHHHHH--hCcceEEEeecccHHHHHHHHHHHhchHHHhhhcccccc
Confidence 887666654 344676 58899999999999999999999988888773
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=97.12 E-value=0.0014 Score=71.58 Aligned_cols=120 Identities=15% Similarity=0.047 Sum_probs=78.7
Q ss_pred CCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCC------eEEEEEcCCCCCCCchhHHhhh
Q psy1288 411 KDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFN------GIYAIPNIRGGGEYGERWHDGG 484 (1012)
Q Consensus 411 ~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G------~~v~~~d~RG~g~~g~~~~~~~ 484 (1012)
-||.+|++......+ ...+.||++||-++... .|... +..|++.| |.|+++|.||.|....
T Consensus 89 i~G~~iHf~h~~~~~----~~~~pLlLlHG~P~s~~--~w~~v-i~~La~~g~~~~~~f~VIaPDLpG~G~S~~------ 155 (394)
T d1qo7a_ 89 IEGLTIHFAALFSER----EDAVPIALLHGWPGSFV--EFYPI-LQLFREEYTPETLPFHLVVPSLPGYTFSSG------ 155 (394)
T ss_dssp ETTEEEEEEEECCSC----TTCEEEEEECCSSCCGG--GGHHH-HHHHHHHCCTTTCCEEEEEECCTTSTTSCC------
T ss_pred ECCEEEEEEEEeccC----CCCCEEEEeccccccHH--HHHHH-HHhhccccCCcccceeeecccccccCCCCC------
Confidence 389999886554432 44577888999876554 44444 44555557 9999999999774321
Q ss_pred hcCCCcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 485 RLLNKQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 485 ~~~~~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
..........+....+..|... ...++..+.|+|+||.++..++..+|+...+.+....
T Consensus 156 P~~~~~y~~~~~a~~~~~l~~~--lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 156 PPLDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCccCHHHHHHHHHHHHhh--ccCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 1111122344555555555554 2335677889999999999988888888777666543
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.12 E-value=0.0013 Score=65.43 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=43.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEK-LRDYPHQTNPLLIRIETKAGHGGGK 869 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~gH~~~~ 869 (1012)
.+..|+|++||.+|..||..+..++++.++.. +. .+++++.|+++|-|..
T Consensus 143 ~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~-------~~~~~vi~gAdHfF~g 193 (218)
T d2i3da1 143 PCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGI-------LITHRTLPGANHFFNG 193 (218)
T ss_dssp TCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTC-------CEEEEEETTCCTTCTT
T ss_pred ccCCCceeeecccceecChHHHHHHHHHHhhccCC-------CccEEEeCCCCCCCcC
Confidence 34489999999999999999999999999874 45 7899999999998864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.09 E-value=0.015 Score=60.70 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=98.6
Q ss_pred eEeeeEEECC--CCcEEEEEEeCCCCceEEEEEEECCCCceecee---------ecceeeeeeEEeeCCCeEEEEecCCC
Q psy1288 157 VSLGSYSFSE--DGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV---------LHRLKFVSIAWTHDHKGVFYSNQEPK 225 (1012)
Q Consensus 157 ~~i~~~~~SP--DGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t---------~~~~~~~~~~WSpDG~~l~y~~~~~~ 225 (1012)
..+..++||| ||++|| +.+.+| +|.++|+..++..... ........+.|++||+.|+.......
T Consensus 64 ~~v~~v~fsP~~~g~~la-sgs~Dg----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~ 138 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLC-SGDESG----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138 (325)
T ss_dssp SCEEEEEECSSTTCCEEE-EEETTS----EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred CCEEEEEEeeCCCCCEEE-EEeCCC----CEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecccc
Confidence 3578899998 556665 444444 6888887665432110 11123467899999999888764321
Q ss_pred CCcc-cCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeecc-CCCceeeeeE
Q psy1288 226 SKSK-KHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEE-NKDDVLDWAT 303 (1012)
Q Consensus 226 ~~g~-~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~-~~~~~~~~~~ 303 (1012)
.... ...+. .+.+.........+....|+++++.+++....+ ..+...+....+. ...+... .....+..+.
T Consensus 139 ~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d---~~v~~~d~~~~~~--~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 139 NFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD---GSVVFYQGPPFKF--SASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp CSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETT---TEEEEEETTTBEE--EEEECSSSCTTCCEEEEE
T ss_pred ceEEEEeecc-cccceeeeecccccccccccccccceEEEeecc---ccccccccccccc--ceecccccCCCCccEEee
Confidence 1000 00000 001100000012333445888888776655432 3455566554331 1111111 1122233333
Q ss_pred Ee-cCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeeccc---ccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 304 CV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGK---KKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 304 ~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~s---pdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+. +++.+++....++ .|.+|++.+++....+......+....++ +|++.|+... . -..|.++|+
T Consensus 213 ~~pd~~~~l~s~~~d~--~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~---D~~i~iwd~ 280 (325)
T d1pgua1 213 FSPDSGEFVITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-A---DATIRVWDV 280 (325)
T ss_dssp ECSTTCCEEEEEETTC--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-T---TSEEEEEET
T ss_pred eccccceecccccccc--ceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-C---CCeEEEEEC
Confidence 32 3345555555554 47778987787665554332222111222 5677655332 2 245888898
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=97.07 E-value=0.00066 Score=60.39 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=61.9
Q ss_pred ECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCC
Q psy1288 409 PSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLN 488 (1012)
Q Consensus 409 ~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~ 488 (1012)
..-+|.+|.+... +.-|.||++||... .| ...|. .+|.|+.+|.||.|....
T Consensus 6 ~~~~G~~l~y~~~--------G~G~pvlllHG~~~-----~w----~~~L~-~~yrvi~~DlpG~G~S~~---------- 57 (122)
T d2dsta1 6 LHLYGLNLVFDRV--------GKGPPVLLVAEEAS-----RW----PEALP-EGYAFYLLDLPGYGRTEG---------- 57 (122)
T ss_dssp EEETTEEEEEEEE--------CCSSEEEEESSSGG-----GC----CSCCC-TTSEEEEECCTTSTTCCC----------
T ss_pred EEECCEEEEEEEE--------cCCCcEEEEecccc-----cc----ccccc-CCeEEEEEeccccCCCCC----------
Confidence 3447888876554 34477888998432 12 12354 599999999999875311
Q ss_pred CcchHhHHHHHHHHHHHcCCCCCCcEEEEecChHHHHHHHHHhhCC
Q psy1288 489 KQNVFDDFQCAAEYLIASGYTQSSRLAIQGGSNGGLLTAACINQRP 534 (1012)
Q Consensus 489 ~~~~~~D~~a~~~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 534 (1012)
...+.+++...+..+++. .+.++..++|+|+||.++..++...+
T Consensus 58 p~~s~~~~a~~i~~ll~~--L~i~~~~viG~S~Gg~ia~~laa~~~ 101 (122)
T d2dsta1 58 PRMAPEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGL 101 (122)
T ss_dssp CCCCHHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTC
T ss_pred cccccchhHHHHHHHHHH--hCCCCcEEEEeCccHHHHHHHHhhcc
Confidence 123344555555555554 23467789999999999888877644
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.03 E-value=0.043 Score=57.27 Aligned_cols=235 Identities=9% Similarity=0.049 Sum_probs=122.9
Q ss_pred eeCCEEEEEEEcCCCCeeEEEEEeCCCCceEE-EcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCC-CceEEEEEEEC
Q psy1288 113 RQGDHYFFFHNTGLQNHSVMYIQDSLDGEARV-FLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSG-SDWTSMHFKDV 190 (1012)
Q Consensus 113 ~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~-L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G-~~~~~L~v~dl 190 (1012)
++|. +||+-... ..|++.+..++.... +.+ .......++++|||+.++ ++..+ .....|+.++.
T Consensus 49 ~~G~-Ly~~D~~~----g~I~ri~p~g~~~~~~~~~-------~~~~p~gla~~~dG~l~v--a~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 49 RQGQ-LFLLDVFE----GNIFKINPETKEIKRPFVS-------HKANPAAIKIHKDGRLFV--CYLGDFKSTGGIFAATE 114 (319)
T ss_dssp TTSC-EEEEETTT----CEEEEECTTTCCEEEEEEC-------SSSSEEEEEECTTSCEEE--EECTTSSSCCEEEEECT
T ss_pred CCCC-EEEEECCC----CEEEEEECCCCeEEEEEeC-------CCCCeeEEEECCCCCEEE--EecCCCccceeEEEEcC
Confidence 4565 77763222 468888766554333 222 112345788999998554 33222 12336777887
Q ss_pred CCCceeceeec---ceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeeccc------ccee---eeeeecCC
Q psy1288 191 ATGKEYPEVLH---RLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNV------APIT---SQYITNEG 258 (1012)
Q Consensus 191 ~tg~~~~~t~~---~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~------~~i~---~~~~s~dg 258 (1012)
.++........ ........+.+||+ |+++........ ....+++..+... .++. -..|++|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~-----~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg 188 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTN-----PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 188 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTB-----CCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred CCceeeeeccCCCcccCCcceeEEeccc-eeeccccccccc-----CcceeEEEecccceeEEEeeccceeeeeeecccc
Confidence 77765432211 12245678999996 766643221100 0111111111000 1111 13589999
Q ss_pred CEEEEEECCCCCCceEEEEeCCCCcccCc---EEee-ccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceee
Q psy1288 259 PQFVFKTNKDAPNYRLITIDFDNFAESNW---KTLI-EENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLY 334 (1012)
Q Consensus 259 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~---~~l~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~ 334 (1012)
+.||+.-. ...+|++++++....... ..+. ..........+....++.|++....+ ..|.+++. +|+...
T Consensus 189 ~~lyvad~---~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~--g~V~~~~p-~G~~l~ 262 (319)
T d2dg1a1 189 KVLWVTET---TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ--GRVLVFNK-RGYPIG 262 (319)
T ss_dssp SEEEEEEG---GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT--TEEEEECT-TSCEEE
T ss_pred ceEEEecc---cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC--CEEEEECC-CCcEEE
Confidence 99998754 345788888764321000 1111 11111112334443335677765543 57888997 688777
Q ss_pred eecCCce------EEEeecccccCcEEEEEecCCCCC--cEEEEEeC
Q psy1288 335 TFPLDVG------TIVGFSGKKKYSEIFYSFMSFLQP--TIIFHCNI 373 (1012)
Q Consensus 335 ~l~~~~~------~v~~~~~spdg~~l~~~~ss~~~p--~~l~~~d~ 373 (1012)
.+..|.. ......+.++.+.++++......+ ..||.++.
T Consensus 263 ~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 263 QILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp EEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred EEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 7766521 123445667777777776544333 46888877
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.03 E-value=0.064 Score=55.73 Aligned_cols=245 Identities=10% Similarity=0.066 Sum_probs=127.9
Q ss_pred eeCCEEEEEEEcC---CCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEE
Q psy1288 113 RQGDHYFFFHNTG---LQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKD 189 (1012)
Q Consensus 113 ~dG~~~yy~~~~~---~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~d 189 (1012)
++|. +|++.... +.....|++.+..++..+.+..+..-... ..-....++|||++|... +.. ..|..+|
T Consensus 27 ~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~--g~P~Gl~~~~dg~~l~va-d~~----~~i~~~~ 98 (314)
T d1pjxa_ 27 KNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG--GIPAGCQCDRDANQLFVA-DMR----LGLLVVQ 98 (314)
T ss_dssp TTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE--CCEEEEEECSSSSEEEEE-ETT----TEEEEEE
T ss_pred CCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCC--CcceeEEEeCCCCEEEEE-ECC----CeEEEEe
Confidence 5565 66654322 01123689998877776666543211100 123468999999877543 322 2588899
Q ss_pred CCCCceeceee--cce---eeeeeEEeeCCCeEEEEecCCCC---CcccC-CCCCceEEEEeeccc-----ccee---ee
Q psy1288 190 VATGKEYPEVL--HRL---KFVSIAWTHDHKGVFYSNQEPKS---KSKKH-SKKNRSSAYHLTVNV-----APIT---SQ 252 (1012)
Q Consensus 190 l~tg~~~~~t~--~~~---~~~~~~WSpDG~~l~y~~~~~~~---~g~~~-~~~~~~l~~~~~~~~-----~~i~---~~ 252 (1012)
.+++....... ... ....++..+||+ |+++...... ..... ......++....... .++. -.
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi 177 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGI 177 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEE
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeee
Confidence 88776432211 111 124578889984 6676422110 00000 001112322221110 1111 12
Q ss_pred eeecCCC----EEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC---CceeeeeEEecCCEEEEEEEcCceEEEEEE
Q psy1288 253 YITNEGP----QFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK---DDVLDWATCVANDKLILSYIHHVKNVMHLH 325 (1012)
Q Consensus 253 ~~s~dg~----~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~ 325 (1012)
.|+++++ .||+.-. ...+|+++++.....-..++++...+ ......+....++.|++.... ..+|+++
T Consensus 178 ~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~--~g~I~~~ 252 (314)
T d1pjxa_ 178 AVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG--SSHIEVF 252 (314)
T ss_dssp EEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--TTEEEEE
T ss_pred EECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC--CCEEEEE
Confidence 4777765 5665532 35678888765432111222322211 112334444443567766543 3578899
Q ss_pred ecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeCC
Q psy1288 326 DLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNIP 374 (1012)
Q Consensus 326 dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~~ 374 (1012)
+.++|+....+..|......+++.+|+++|+++.+. -..|+++++.
T Consensus 253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~---~g~i~~~~~~ 298 (314)
T d1pjxa_ 253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQ 298 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECS
T ss_pred eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC---CCcEEEEECC
Confidence 986666555566664445567788999998887643 3589999984
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.02 E-value=0.013 Score=63.93 Aligned_cols=127 Identities=8% Similarity=0.028 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEe
Q psy1288 142 ARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 142 ~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
++++.+++.+. ..+.+++|.+.+.+....++ .+|.++|+++++.+.....+....++++||||+.||...
T Consensus 11 ~~~~~~~~~~p-------~~~~~~~d~~~~~~V~~~~d---g~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~ 80 (426)
T d1hzua2 11 WKVLVKPEDRP-------KKQLNDLDLPNLFSVTLRDA---GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG 80 (426)
T ss_dssp CEESSCGGGSC-------SSCCSCCCGGGEEEEEETTT---TEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred heeeCCcccCC-------CcccccCCCCeEEEEEEcCC---CEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe
Confidence 56666544332 23557888877766554432 279999999999765322233457799999999886554
Q ss_pred cCCCCCcc-cCCCCCceEEEEeecc--cccee-eeeeecCCCEEEEEECCCCCCceEEEEeCCCC
Q psy1288 222 QEPKSKSK-KHSKKNRSSAYHLTVN--VAPIT-SQYITNEGPQFVFKTNKDAPNYRLITIDFDNF 282 (1012)
Q Consensus 222 ~~~~~~g~-~~~~~~~~l~~~~~~~--~~~i~-~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~ 282 (1012)
.+....-. .+..+. ......... ..++. ...|+|||+++++.... ...+...|....
T Consensus 81 ~d~~v~vwd~~t~~~-~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~---~~~v~i~d~~~~ 141 (426)
T d1hzua2 81 RDARIDMIDLWAKEP-TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW---PPQFAIMDGETL 141 (426)
T ss_dssp TTSEEEEEETTSSSC-EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE---SSEEEEEETTTC
T ss_pred CCCCEEEEEccCCce-eEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC---CCeEEEEcCCcc
Confidence 33210000 011111 111111100 01111 23578999999887643 234555565554
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.02 E-value=4.9e-05 Score=75.59 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=40.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+|++||++|..||+.+++++++.++.. .++++++++.||...
T Consensus 175 ~~~~p~lii~g~~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~gH~~~ 221 (242)
T d1tqha_ 175 LIYAPTFVVQARHDEMINPDSANIIYNEIESP---------VKQIKWYEQSGHVIT 221 (242)
T ss_dssp GCCSCEEEEEETTCSSSCTTHHHHHHHHCCCS---------SEEEEEETTCCSSGG
T ss_pred eeccccceeecccCCccCHHHHHHHHHHcCCC---------CcEEEEECCCCCcCc
Confidence 66799999999999999999999998776432 578999999999864
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.96 E-value=0.00024 Score=74.10 Aligned_cols=108 Identities=12% Similarity=0.019 Sum_probs=59.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHH-HHHHHHcC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCA-AEYLIASG 507 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~-~~~l~~~~ 507 (1012)
....|.++++||.........|.. +...|.. ++.|+.++.+|.+..... .......+++++.+. ++.+....
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~-la~~L~~-~~~V~al~~pG~~~~~~~-----~~~~~~~s~~~~a~~~~~~i~~~~ 129 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLR-LSTSFQE-ERDFLAVPLPGYGTGTGT-----GTALLPADLDTALDAQARAILRAA 129 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHH-HHHTTTT-TCCEEEECCTTCCBC--------CBCCEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEeCCCCCCCCHHHHHH-HHHhcCC-CceEEEEeCCCCCCCCCC-----ccccccCCHHHHHHHHHHHHHHhc
Confidence 355688999998432222223432 3445553 789999999986532110 001111234444432 23333321
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhC----CCceeEEEEccC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQR----PDLFGAAIVQVG 545 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~----p~~f~a~v~~~~ 545 (1012)
....+.++|||+||.++..++.+. +.....++...+
T Consensus 130 --~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~ 169 (283)
T d2h7xa1 130 --GDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDP 169 (283)
T ss_dssp --TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESC
T ss_pred --CCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecC
Confidence 234688999999999998877654 334555555543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.88 E-value=0.026 Score=57.13 Aligned_cols=179 Identities=12% Similarity=0.018 Sum_probs=91.1
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK 234 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~ 234 (1012)
...+..++|||||++||= .+.+| .|.++|+++++.... .........+.|+|++..++.........-. +..
T Consensus 17 ~~~I~~l~~sp~~~~l~s-~s~Dg----~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 89 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVS-ASEDA----TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW-DFQ- 89 (317)
T ss_dssp SSCEEEEEECSSSSEEEE-EESSS----CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE-ETT-
T ss_pred CCCeEEEEEcCCCCEEEE-EeCCC----eEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc-ccc-
Confidence 346888999999998764 44444 699999999886542 2223345789999999988776543211000 000
Q ss_pred CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEE
Q psy1288 235 NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSY 314 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 314 (1012)
..............+....++++++.++.... +..+...++.++.. ...+..+. . ....+.+..++.+++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQTGYC--VKTFTGHR-E-WVRMVRPNQDGTLIASC 161 (317)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCCE--EEEEECCS-S-CEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccceeeeccCCCceEEeecc----CcceeEeeccccee--eeEEccCC-C-cceeeecccCCCEEEEE
Confidence 00000000000012223357888888776663 34566667765541 12222222 2 22223332223344444
Q ss_pred EcCceEEEEEEecCCCceeeeecCCceEEEeeccccc
Q psy1288 315 IHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKK 351 (1012)
Q Consensus 315 ~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spd 351 (1012)
..++ .+.++++.+++....+......+..+.++++
T Consensus 162 ~~d~--~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 196 (317)
T d1vyhc1 162 SNDQ--TVRVWVVATKECKAELREHRHVVECISWAPE 196 (317)
T ss_dssp ETTS--CEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred eCCC--eEEEEeeccceeeEEEecCCCCceEEEEeec
Confidence 4433 4667777666554444433333333344433
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=96.86 E-value=0.00027 Score=77.25 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=37.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+|+++|.-|.- ....+.+.+.+|+.+++ +.|..|++-|. +|+.
T Consensus 276 ~i~vP~l~~~g~~dd~-~~~g~~~~~~~l~~~~~-----~~~~~LiiGPw-~H~~ 323 (385)
T d2b9va2 276 KPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADV-----KAPNTLVMGPW-RHSG 323 (385)
T ss_dssp CCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTC-----SSCEEEEEESC-CTTG
T ss_pred cccCceEEEEecccCC-cccchHHHHHHHHhhcc-----CCCcEEEEeCC-cCCC
Confidence 4568999999988754 47788899999998866 44899999877 4753
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.82 E-value=0.12 Score=53.01 Aligned_cols=235 Identities=9% Similarity=0.026 Sum_probs=112.7
Q ss_pred eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECC
Q psy1288 112 QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA 191 (1012)
Q Consensus 112 ~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~ 191 (1012)
.|||. +|+..... ..||+.+.. ++.+.+... .......+++|||+.++ .+..++. |+++++.
T Consensus 36 ~pdG~-l~vt~~~~----~~I~~i~p~-g~~~~~~~~-------~~~~~gla~~~dG~l~v--~~~~~~~---~~~~~~~ 97 (302)
T d2p4oa1 36 APDGT-IFVTNHEV----GEIVSITPD-GNQQIHATV-------EGKVSGLAFTSNGDLVA--TGWNADS---IPVVSLV 97 (302)
T ss_dssp CTTSC-EEEEETTT----TEEEEECTT-CCEEEEEEC-------SSEEEEEEECTTSCEEE--EEECTTS---CEEEEEE
T ss_pred CCCCC-EEEEeCCC----CEEEEEeCC-CCEEEEEcC-------CCCcceEEEcCCCCeEE--EecCCce---EEEEEec
Confidence 46775 65543322 478988764 455555442 23567889999998433 3333332 3444433
Q ss_pred --CCceeceee--cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc-eEEEEeeccc-----ccee-eeeeecCCCE
Q psy1288 192 --TGKEYPEVL--HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR-SSAYHLTVNV-----APIT-SQYITNEGPQ 260 (1012)
Q Consensus 192 --tg~~~~~t~--~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~-~l~~~~~~~~-----~~i~-~~~~s~dg~~ 260 (1012)
.+....... .......+.+.+||+ +++...........+..... .++....... .... ...++.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~ 176 (302)
T d2p4oa1 98 KSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF 176 (302)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred ccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc
Confidence 333322211 122235678888885 44443211100000001111 1111110000 0011 1124557888
Q ss_pred EEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeec--C
Q psy1288 261 FVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFP--L 338 (1012)
Q Consensus 261 l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~--~ 338 (1012)
+|+.... ...+++++...........+..+. .....+....++.|++....+ .+|++++. +|+.....+ .
T Consensus 177 l~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~--~~V~~i~p-~G~~~~~~~~~~ 248 (302)
T d2p4oa1 177 LYVSNTE---KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIY--NSVVRIAP-DRSTTIIAQAEQ 248 (302)
T ss_dssp EEEEETT---TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTT--CCEEEECT-TCCEEEEECGGG
T ss_pred eeeecCC---CCeEEeccccccccccccccccCC--CCCcceEECCCCCEEEEEcCC--CcEEEECC-CCCEEEEEecCC
Confidence 8887643 467899987654321111222111 122334443335676665443 45888888 465433333 2
Q ss_pred CceEEEeecc---cccCcEEEEEecC--------CCCCcEEEEEeC
Q psy1288 339 DVGTIVGFSG---KKKYSEIFYSFMS--------FLQPTIIFHCNI 373 (1012)
Q Consensus 339 ~~~~v~~~~~---spdg~~l~~~~ss--------~~~p~~l~~~d~ 373 (1012)
+......+++ ++|++.||++.+. ...|..++++|+
T Consensus 249 ~~~~pt~vafg~~~~D~~~Lyvtt~~g~~~~~~~~~~~~~~~~~~~ 294 (302)
T d2p4oa1 249 GVIGSTAVAFGQTEGDCTAIYVVTNGGMFLPPPTGVVPANVVRLEV 294 (302)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTTSSSCCTTCCCCEEEEEEEC
T ss_pred CCCCceEEEEcCCCCCCCEEEEECCCCccCCCcCCcCCCeEEEEeC
Confidence 2222234444 6788999987653 233567777776
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.76 E-value=0.024 Score=58.38 Aligned_cols=106 Identities=21% Similarity=0.160 Sum_probs=64.6
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCC-------CceE
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSG-------SDWT 183 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G-------~~~~ 183 (1012)
.+|||+++|-.-... ..|+..+...++...-++..... ........+.+||||++++....... ....
T Consensus 41 ~spDg~~l~v~~~~~----~~v~v~D~~t~~~~~~~~~~~~~-~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T d1pbyb_ 41 VAPGGRIAYATVNKS----ESLVKIDLVTGETLGRIDLSTPE-ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp ECTTSSEEEEEETTT----TEEEEEETTTCCEEEEEECCBTT-EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ECCCCCEEEEEECCC----CeEEEEECCCCcEEEEEecCCCc-ccccceeeEEEcCCCcEEEEeecCCcceeeecccccc
Confidence 458998776543222 35666677666544333322100 00123457899999999987765321 1124
Q ss_pred EEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEe
Q psy1288 184 SMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 184 ~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
.+.++|..+++.+...........++|+|||+.++...
T Consensus 116 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 116 RVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp EEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred ceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence 78899999988765333333346789999999887653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.032 Score=58.09 Aligned_cols=167 Identities=10% Similarity=0.055 Sum_probs=86.1
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEec-CCCCCcccCCCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQ-EPKSKSKKHSKKN 235 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~-~~~~~g~~~~~~~ 235 (1012)
.+..+.|||||++|+......+ ..+.+++.++++...... .......+.|+|++..++.+.. +....-. +.. .
T Consensus 117 ~v~~v~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~-d~~-~ 191 (325)
T d1pgua1 117 PISDISWDFEGRRLCVVGEGRD---NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY-QGP-P 191 (325)
T ss_dssp CEEEEEECTTSSEEEEEECCSS---CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE-ETT-T
T ss_pred cEEEEEECCCCCccceeecccc---ceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccc-ccc-c
Confidence 4678999999999988764322 246777888887654322 2233567899999987766543 2110000 000 0
Q ss_pred ceEEEEeec--c-ccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCc--eeeeeEEecCCEE
Q psy1288 236 RSSAYHLTV--N-VAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDD--VLDWATCVANDKL 310 (1012)
Q Consensus 236 ~~l~~~~~~--~-~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~l 310 (1012)
.+....... . ...+....|+||++.+++....+ ..|...|+.+++. ...+-.+.... ..-...+.+++.|
T Consensus 192 ~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d---~~i~iwd~~~~~~--~~~l~~~~~~v~~~~~s~~~~dg~~l 266 (325)
T d1pgua1 192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD---RKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWLDSQKF 266 (325)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT---CCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEESSSSEE
T ss_pred cccceecccccCCCCccEEeeeccccceeccccccc---cceeeeeeccccc--cccccccccccccceeeeeccCCCEE
Confidence 000000000 0 02233445899876666655432 3466677766541 22222222111 1112233454555
Q ss_pred EEEEEcCceEEEEEEecCCCceeeeec
Q psy1288 311 ILSYIHHVKNVMHLHDLASGKHLYTFP 337 (1012)
Q Consensus 311 ~~~~~~~g~~~l~~~dl~~G~~~~~l~ 337 (1012)
+. ...++ .|.+|++.+++..+.+.
T Consensus 267 ~s-~s~D~--~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 267 AT-VGADA--TIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp EE-EETTS--EEEEEETTTTEEEEEEE
T ss_pred EE-EeCCC--eEEEEECCCCCEEEEEE
Confidence 44 44444 57888998777655544
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=96.69 E-value=0.003 Score=64.99 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+|+.|+|||+|++|+-||+.++..+.+.+. -.+++++++.||.+.
T Consensus 234 ~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p-----------~~~~~~i~~~gH~~~ 278 (297)
T d1q0ra_ 234 EVTVPTLVIQAEHDPIAPAPHGKHLAGLIP-----------TARLAEIPGMGHALP 278 (297)
T ss_dssp GCCSCEEEEEETTCSSSCTTHHHHHHHTST-----------TEEEEEETTCCSSCC
T ss_pred ccCCceEEEEeCCCCCCCHHHHHHHHHhCC-----------CCEEEEECCCCCcch
Confidence 678999999999999999988876644321 357889999999864
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.65 E-value=0.1 Score=56.79 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=69.4
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCC-----------
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSG----------- 179 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G----------- 179 (1012)
++|+|++++|....+|.+...|+.+++.+++.....-+ ....+.+.|++|++.|.|+.....
T Consensus 132 ~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-------~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred ecCCCCEEEEEeccccCchheeEEeccCcceecccccc-------cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 56999999999998888899999999987753221110 112367899999999999874321
Q ss_pred CceEEEEEEECCCCceeceee-cc----eeeeeeEEeeCCCeEEEEe
Q psy1288 180 SDWTSMHFKDVATGKEYPEVL-HR----LKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 180 ~~~~~L~v~dl~tg~~~~~t~-~~----~~~~~~~WSpDG~~l~y~~ 221 (1012)
.....+|...+.+.......+ +. .....+..|.||+.++...
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~ 251 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence 123478888887764322111 11 1124456788999877654
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.19 E-value=0.00054 Score=70.57 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=44.2
Q ss_pred hHcCCCCCCCCCCCCCCCC---CCCceEEEcccCCCCCCCc-----------chHHHHHHHHHHhcCCCCCCCCEEEEEe
Q psy1288 795 LLGYSPLHNIQGPNELKGK---QYPATLLMTADHDDRVSPV-----------HSLKFAATLQEKLRDYPHQTNPLLIRIE 860 (1012)
Q Consensus 795 ~~~~Sp~~~v~~~~~~~~~---~~~p~l~~~g~~D~rv~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 860 (1012)
+.+.+|+.+++ + ..+++++.+|.+|..+... ++.+|..+|++.+. .++.+.+.
T Consensus 175 ~~~~~p~~~~~-------~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g------~~~~~~~~ 241 (267)
T d1r88a_ 175 WKWHDPWVHAS-------LLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGG------HNGHFDFP 241 (267)
T ss_dssp TGGGCTTTTHH-------HHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTC------CSEEEECC
T ss_pred HHhcCHHHHHH-------hccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHHHHHHHcCC------CcEEEEEc
Confidence 45678887776 3 3478899999999887643 34567778887753 38888888
Q ss_pred CCCCCCC
Q psy1288 861 TKAGHGG 867 (1012)
Q Consensus 861 ~~~gH~~ 867 (1012)
++.||.+
T Consensus 242 ~~G~H~W 248 (267)
T d1r88a_ 242 ASGDNGW 248 (267)
T ss_dssp SSCCSSH
T ss_pred CCCeECh
Confidence 8888965
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=96.15 E-value=0.0023 Score=65.37 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=35.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+||++|++|.-+|+..+.++...+. ..+++++++.||..
T Consensus 220 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~-----------~~~~~~i~~~gH~~ 263 (281)
T d1c4xa_ 220 RLPHDVLVFHGRQDRIVPLDTSLYLTKHLK-----------HAELVVLDRCGHWA 263 (281)
T ss_dssp TCCSCEEEEEETTCSSSCTHHHHHHHHHCS-----------SEEEEEESSCCSCH
T ss_pred hhccceEEEEeCCCCCcCHHHHHHHHHHCC-----------CCEEEEECCCCCch
Confidence 678999999999999999988777654331 35788999999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.13 E-value=0.22 Score=49.64 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=93.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+....++|+++.++.... ++ .+.++|+++++..... ........+.|+||++.|+....+....-. +....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~-d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~-~~~~~ 175 (317)
T d1vyhc1 102 HNVSSVSIMPNGDHIVSASR-DK----TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW-VVATK 175 (317)
T ss_dssp SCEEEEEECSSSSEEEEEET-TS----EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE-ETTTC
T ss_pred ccceeeeccCCCceEEeecc-Cc----ceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEE-eeccc
Confidence 34667899999999875443 22 7889999988765422 222334678999999987766543211000 00000
Q ss_pred ceEEEEee-------------ccc-------cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCC
Q psy1288 236 RSSAYHLT-------------VNV-------APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENK 295 (1012)
Q Consensus 236 ~~l~~~~~-------------~~~-------~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~ 295 (1012)
....... ... ...........+..++..+. +..+...++.++.. ...+..+ .
T Consensus 176 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~~~~~~~~~~--~~~~~~~-~ 247 (317)
T d1vyhc1 176 -ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR----DKTIKMWDVSTGMC--LMTLVGH-D 247 (317)
T ss_dssp -CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET----TSEEEEEETTTTEE--EEEEECC-S
T ss_pred -eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC----CCEEEEEECCCCcE--EEEEeCC-C
Confidence 0000000 000 00000111223333333322 24566667665431 1222222 2
Q ss_pred CceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEeecccccCcEEEEE
Q psy1288 296 DDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYS 358 (1012)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~ 358 (1012)
.. +..+.+..++.+++....++ .|.+|++.+++....+......+..++|+|+++.|+..
T Consensus 248 ~~-v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 248 NW-VRGVLFHSGGKFILSCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307 (317)
T ss_dssp SC-EEEEEECSSSSCEEEEETTT--EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred CC-EEEEEECCCCCEEEEEECCC--eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 22 33333332233344444443 58889998887766665545567788899999876643
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0044 Score=62.56 Aligned_cols=92 Identities=8% Similarity=-0.060 Sum_probs=53.5
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGYT 509 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~~ 509 (1012)
.+.| |+++||+.+... .| ..+....++.|+.+|.+|.+..... .....|....+ .+. .
T Consensus 24 ~~~P-l~l~Hg~~gs~~--~~----~~l~~~L~~~v~~~d~~g~~~~~~~----------~~~a~~~~~~~---~~~--~ 81 (286)
T d1xkta_ 24 SERP-LFLVHPIEGSTT--VF----HSLASRLSIPTYGLQCTRAAPLDSI----------HSLAAYYIDCI---RQV--Q 81 (286)
T ss_dssp CSCC-EEEECCTTCCCG--GG----HHHHHTCSSCEEEECCCTTSCCSCH----------HHHHHHHHHHH---HHH--C
T ss_pred CCCe-EEEECCCCccHH--HH----HHHHHHcCCeEEEEeCCCCCCCCCH----------HHHHHHHHHHH---HHh--c
Confidence 3445 668899876543 23 2334434678899999986643210 11122332222 222 2
Q ss_pred CCCcEEEEecChHHHHHHHHHhhCCCceeEEEEc
Q psy1288 510 QSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQ 543 (1012)
Q Consensus 510 d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 543 (1012)
...++.++|||+||.++..++.++|++...++..
T Consensus 82 ~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l 115 (286)
T d1xkta_ 82 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTH 115 (286)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHC------C
T ss_pred CCCceEEeecCCccHHHHHHHHHHHHcCCCceeE
Confidence 2357889999999999999999988876655443
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=96.08 E-value=0.0032 Score=65.89 Aligned_cols=112 Identities=9% Similarity=-0.049 Sum_probs=68.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHcCC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIASGY 508 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~~~ 508 (1012)
+...|+++++||-...............+|....+.|+++|.+..... .+..+.... ...-+.+...+++|.....
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~~n~--~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAANNV--RVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence 456799999999754443222222334566655699999999653321 111111100 0011234445666676666
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
+++++|.++|||.|+.+++.+..+. ..+..++..-|
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rItgLDP 178 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRITGLDP 178 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEEEESC
T ss_pred CChhheEEEeecHHHhhhHHHHHhh-ccccceeccCC
Confidence 7899999999999999998777654 34555555544
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=95.99 E-value=0.01 Score=59.59 Aligned_cols=45 Identities=29% Similarity=0.191 Sum_probs=36.8
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+||++|++|.-||...+.++.+++-. .+.++++|+.||.+
T Consensus 211 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~----------~~~~~~i~~~gH~~ 255 (273)
T d1a8sa_ 211 KIDVPTLVVHGDADQVVPIEASGIASAALVK----------GSTLKIYSGAPHGL 255 (273)
T ss_dssp TCCSCEEEEEETTCSSSCSTTTHHHHHHHST----------TCEEEEETTCCSCH
T ss_pred hhccceEEEecCCCCCCCHHHHHHHHHHhCC----------CCEEEEECCCCCch
Confidence 6779999999999999999888887655421 35788899999975
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=95.99 E-value=0.0063 Score=61.91 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=37.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+++.|+||++|++|..+|+.++.++.+.+. .++++++++.||.+
T Consensus 221 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~-----------~~~~~~i~~~gH~~ 264 (283)
T d2rhwa1 221 EIKAKTFITWGRDDRFVPLDHGLKLLWNID-----------DARLHVFSKCGHWA 264 (283)
T ss_dssp GCCSCEEEEEETTCSSSCTHHHHHHHHHSS-----------SEEEEEESSCCSCH
T ss_pred hCCCCEEEEEeCCCCCcCHHHHHHHHHhCC-----------CCEEEEECCCCCch
Confidence 677999999999999999999888766541 35788999999964
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=95.98 E-value=0.0017 Score=67.62 Aligned_cols=49 Identities=14% Similarity=0.004 Sum_probs=42.1
Q ss_pred CCCCceEEEcccCCCCCCC-----cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC-----CCCC
Q psy1288 813 KQYPATLLMTADHDDRVSP-----VHSLKFAATLQEKLRDYPHQTNPLLIRIETKAG-----HGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-----H~~~ 868 (1012)
.+.+|+||+||++|++||. .++.+++.+|++.|. +++++.+|++| |...
T Consensus 239 ~~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~-------~~~~~~lp~~gi~G~gH~~~ 297 (318)
T d1qlwa_ 239 LTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGG-------KGQLMSLPALGVHGNSHMMM 297 (318)
T ss_dssp GTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTC-------CEEEEEGGGGTCCCCCTTGG
T ss_pred hccCCEEEEecCcCcccChhhhHHHHHHHHHHHHHHhCC-------CcEEEEecccccCCCcCccc
Confidence 5669999999999999995 467789999999988 99999998755 8754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=95.94 E-value=0.6 Score=47.39 Aligned_cols=196 Identities=10% Similarity=0.018 Sum_probs=91.2
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcc--cCC-CCC
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK--KHS-KKN 235 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~--~~~-~~~ 235 (1012)
+.+++++|||+. |..+..+. +||.+|.++... ...........++|+|||+ |+.+......... ... ...
T Consensus 30 ~e~iAv~pdG~l--~vt~~~~~---~I~~i~p~g~~~-~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~ 102 (302)
T d2p4oa1 30 LENLASAPDGTI--FVTNHEVG---EIVSITPDGNQQ-IHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT 102 (302)
T ss_dssp EEEEEECTTSCE--EEEETTTT---EEEEECTTCCEE-EEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC
T ss_pred cCCEEECCCCCE--EEEeCCCC---EEEEEeCCCCEE-EEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccc
Confidence 667899999983 34444332 799999765433 3222233457899999997 5454322110000 000 000
Q ss_pred ceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEE------eeccCCCceeeeeEEecCCE
Q psy1288 236 RSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKT------LIEENKDDVLDWATCVANDK 309 (1012)
Q Consensus 236 ~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~------l~~~~~~~~~~~~~~~~~~~ 309 (1012)
...+... ..........+.++| .+|+... ....+++++...+....+.. ............+.. +++.
T Consensus 103 ~~~~~~~-~~~~~~n~i~~~~~g-~~~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~-~~~~ 176 (302)
T d2p4oa1 103 VETLLTL-PDAIFLNGITPLSDT-QYLTADS---YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR-FGNF 176 (302)
T ss_dssp EEEEEEC-TTCSCEEEEEESSSS-EEEEEET---TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE-ETTE
T ss_pred eeecccc-CCccccceeEEccCC-CEEeecc---ccccceeeeccCCcceeEecCCccceeeccCcccccccccc-cCCc
Confidence 0000000 000111122355555 5665543 34578888876543110000 000000111122333 3467
Q ss_pred EEEEEEcCceEEEEEEecCCCceeeeec--CCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 310 LILSYIHHVKNVMHLHDLASGKHLYTFP--LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 310 l~~~~~~~g~~~l~~~dl~~G~~~~~l~--~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++..... .++++++........... .......++.+++||+ |++..... ..|++++.
T Consensus 177 l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~~~---~~V~~i~p 236 (302)
T d2p4oa1 177 LYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIY---NSVVRIAP 236 (302)
T ss_dssp EEEEETTT--TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTT---CCEEEECT
T ss_pred eeeecCCC--CeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEcCC---CcEEEECC
Confidence 77665543 577888874332211110 0111122456778886 66554332 36888887
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.94 E-value=0.0045 Score=64.64 Aligned_cols=112 Identities=8% Similarity=-0.070 Sum_probs=70.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchH-hHHHHHHHHHHHcC
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVF-DDFQCAAEYLIASG 507 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~-~D~~a~~~~l~~~~ 507 (1012)
+..+|+++++||-.+............++|....+.|+++|....... .+..+.... ..+ ..+...++.|....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~n~---~~Vg~~ia~~i~~l~~~~ 141 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASYNT---RVVGAEIAFLVQVLSTEM 141 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHHhH---HHHHHHHHHHHHHHHHhc
Confidence 456799999999654433322233334567655699999998653321 111111110 111 12333455666555
Q ss_pred CCCCCcEEEEecChHHHHHHHHHhhCCCceeEEEEccC
Q psy1288 508 YTQSSRLAIQGGSNGGLLTAACINQRPDLFGAAIVQVG 545 (1012)
Q Consensus 508 ~~d~~~i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 545 (1012)
.++++++-++|||.|+.+++.+..+.+..+..+...-|
T Consensus 142 g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDP 179 (338)
T d1bu8a2 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDP 179 (338)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESC
T ss_pred CCCcceeEEEeccHHHHHHHHHHHhhcccccccccccc
Confidence 67899999999999999999998877666666666555
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=95.87 E-value=0.0024 Score=64.66 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=35.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+||++|++|..||+..+..+.+.+. .++++++++.||..
T Consensus 209 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~ 252 (271)
T d1uk8a_ 209 TLPNETLIIHGREDQVVPLSSSLRLGELID-----------RAQLHVFGRCGHWT 252 (271)
T ss_dssp TCCSCEEEEEETTCSSSCHHHHHHHHHHCT-----------TEEEEEESSCCSCH
T ss_pred hhccceeEEecCCCCCcCHHHHHHHHHhCC-----------CCEEEEECCCCCch
Confidence 677999999999999999888777654431 35788999999964
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=95.83 E-value=0.019 Score=57.58 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
+++.|+||++|++|.-+|+..+.+..+.+ ++ -++++++++.||...
T Consensus 210 ~i~~Pvlii~G~~D~~~~~~~~~~~~~~~----~~------~~~~~~i~~~gH~~~ 255 (274)
T d1a8qa_ 210 KFDIPTLVVHGDDDQVVPIDATGRKSAQI----IP------NAELKVYEGSSHGIA 255 (274)
T ss_dssp TCCSCEEEEEETTCSSSCGGGTHHHHHHH----ST------TCEEEEETTCCTTTT
T ss_pred hccceeeeeccCCCCCcCHHHHHHHHHHh----CC------CCEEEEECCCCCccc
Confidence 67799999999999999987765544332 21 358899999999753
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.83 E-value=0.76 Score=43.08 Aligned_cols=233 Identities=10% Similarity=0.119 Sum_probs=124.5
Q ss_pred cccCCCCCCCeeeC--CEEEEEEE-cCCCCeeEEEEEeCCC-CceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeC
Q psy1288 102 MWDYPKYSSPQRQG--DHYFFFHN-TGLQNHSVMYIQDSLD-GEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSS 177 (1012)
Q Consensus 102 ~~~~~~~s~p~~dG--~~~yy~~~-~~~~~~~~l~~~~~~~-g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~ 177 (1012)
+.+++-.+.+.|.- +++-|.|+ ..++++-.||..++.. |++..+-.+. +.++. +.--|++.|+|+-..
T Consensus 51 LtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk------~vRI~--S~~yddk~vvF~Gas 122 (313)
T d2hu7a1 51 LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK------PMRIL--SGVDTGEAVVFTGAT 122 (313)
T ss_dssp CCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC------SBEEE--EEEECSSCEEEEEEC
T ss_pred EecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc------eEEEE--EeeecCceEEEeccc
Confidence 44555444444543 68999998 5567788899988763 5555554432 24444 445699999999776
Q ss_pred CCCceEEEEEEECCCCceeceee-ccee---------eeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeecccc
Q psy1288 178 SGSDWTSMHFKDVATGKEYPEVL-HRLK---------FVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTVNVA 247 (1012)
Q Consensus 178 ~G~~~~~L~v~dl~tg~~~~~t~-~~~~---------~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 247 (1012)
.+ ...||+++ +|+.+.++. +.-+ ..++..-.-++.=+|+++-.. .+-+++- + ...
T Consensus 123 ed--~~~LYvie--gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~S--------G~lri~t--p-keG 187 (313)
T d2hu7a1 123 ED--RVALYALD--GGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS--------GGLRVFD--S-GEG 187 (313)
T ss_dssp SS--CEEEEEEE--TTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTT--------EEEEEEC--C-SSE
T ss_pred CC--ceEEEEEe--CCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEeccc--------CCEEEec--C-CCC
Confidence 54 35778775 777665432 1111 122222222333355554311 0111110 0 001
Q ss_pred ceeeeeeecCCCEEEEEEC-CCCCCceEEEEeCCCCcccCcEEe-eccCC-----CceeeeeEEecCCEEEEEEEcCceE
Q psy1288 248 PITSQYITNEGPQFVFKTN-KDAPNYRLITIDFDNFAESNWKTL-IEENK-----DDVLDWATCVANDKLILSYIHHVKN 320 (1012)
Q Consensus 248 ~i~~~~~s~dg~~l~~~tn-~~~~~~~L~~~dl~~~~~~~~~~l-~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (1012)
.+......++.+- .++ .......+..+|+.++. ..++ +++.+ ...+.|.....++.|.+...++|++
T Consensus 188 S~~~ay~~~gnKV---~sdyEt~gEsywit~D~~s~~---yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s 261 (313)
T d2hu7a1 188 SFSSASISPGMKV---TAGLETAREARLVTVDPRDGS---VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS 261 (313)
T ss_dssp EEEEEEECTTSCE---EEEEEESSCEEEEEECTTTCC---EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred cccceeEccCcee---eeccCCCCceEEEEEecccCc---eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCch
Confidence 1122223333332 222 11222334456665543 2332 12221 1234555555557787778888999
Q ss_pred EEEEEecCCCceeeeecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEe
Q psy1288 321 VMHLHDLASGKHLYTFPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCN 372 (1012)
Q Consensus 321 ~l~~~dl~~G~~~~~l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d 372 (1012)
.|++ +|+. +..|.|.+.+.. .=++.++|+.+|..+|..+..+.
T Consensus 262 ~lF~----nGk~---in~p~G~~~gat--~i~~~iyfshsSL~tP~kI~~~~ 304 (313)
T d2hu7a1 262 AVFI----DGER---VEAPQGNHGRVV--LWRGKLVTSHTSLSTPPRIVSLP 304 (313)
T ss_dssp EEEE----TTEE---ECCCSSEEEEEE--EETTEEEEEEEETTEEEEEEEET
T ss_pred heee----cceE---ecCCCCcccceE--EECCEEEEeecccCCCceeEEcC
Confidence 8874 6753 555666665433 22578999999999999987764
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=95.81 E-value=0.0034 Score=63.12 Aligned_cols=45 Identities=29% Similarity=0.223 Sum_probs=37.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+|+++|++|.-+|+..+.++++.+-. .++++++|+.||..
T Consensus 209 ~i~~Pvl~i~g~~D~~~~~~~~~~~~~~~~~----------~~~~~~~~~~gH~~ 253 (271)
T d1va4a_ 209 KIDVPTLVIHGDGDQIVPFETTGKVAAELIK----------GAELKVYKDAPHGF 253 (271)
T ss_dssp HCCSCEEEEEETTCSSSCGGGTHHHHHHHST----------TCEEEEETTCCTTH
T ss_pred hcccceeecccCCCCCCCHHHHHHHHHHhCC----------CCEEEEECCCCCch
Confidence 5669999999999999999999888665521 35788999999975
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.56 E-value=0.2 Score=50.43 Aligned_cols=145 Identities=8% Similarity=0.110 Sum_probs=81.2
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee--ecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCc
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV--LHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNR 236 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t--~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~ 236 (1012)
....++||||++|+.... +| .|.++|+++++..... ........++|+||++.|+....+..
T Consensus 139 ~~~~~~s~~~~~l~~g~~-dg----~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~----------- 202 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQ-DS----KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK----------- 202 (299)
T ss_dssp EEEEEECTTSCEEEEEET-TS----EEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-----------
T ss_pred cccccccccccccccccc-cc----cccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 456889999999986543 22 7899999888754322 22334578999999998876654321
Q ss_pred eEEEEeec------------cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE
Q psy1288 237 SSAYHLTV------------NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC 304 (1012)
Q Consensus 237 ~l~~~~~~------------~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (1012)
..++.... ....+....|+|+|+.|+..+.. ..+...|+..+..... ..........+....+
T Consensus 203 i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~ 277 (299)
T d1nr0a2 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD----NSVIVWNMNKPSDHPI-IIKGAHAMSSVNSVIW 277 (299)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTCTTSCCE-EETTSSTTSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccceEEEcCC----CEEEEEECCCCCcceE-EEecCCCCCcEEEEEE
Confidence 11111100 00233344589999988876643 3577777766542111 1111122233444444
Q ss_pred ecCCEEEEEEEcCceEEEEEEec
Q psy1288 305 VANDKLILSYIHHVKNVMHLHDL 327 (1012)
Q Consensus 305 ~~~~~l~~~~~~~g~~~l~~~dl 327 (1012)
.+++.|+. ...|+ .|.+|++
T Consensus 278 ~~~~~l~s-~s~D~--~i~iWdl 297 (299)
T d1nr0a2 278 LNETTIVS-AGQDS--NIKFWNV 297 (299)
T ss_dssp EETTEEEE-EETTS--CEEEEEC
T ss_pred CCCCEEEE-EeCCC--EEEEEec
Confidence 55455544 33444 4556665
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.53 E-value=0.0023 Score=66.09 Aligned_cols=129 Identities=11% Similarity=-0.062 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhCCCCCCCCCCCCCc--cCCccccccCccceeeeccccccccchhh-----hcccccCCCCC--------
Q psy1288 709 TIPVIYFYLTSGPVLQRYPETPNKA--DGSENVRNQDQKLYYHYLGTDQKDDILIA-----EVLDMLKFNKF-------- 773 (1012)
Q Consensus 709 ~~~~~~fl~~~l~~~~~~~d~~~~~--GgS~g~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~~~-------- 773 (1012)
..+++.++++.... ++.+++ |-|.| +|.++.....+|++|.+ |++++......
T Consensus 98 ~~el~~~i~~~~~~-----d~~r~~i~G~SmG-------G~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~~~~~~~~~~~ 165 (280)
T d1dqza_ 98 TREMPAWLQANKGV-----SPTGNAAVGLSMS-------GGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMN 165 (280)
T ss_dssp HTHHHHHHHHHHCC-----CSSSCEEEEETHH-------HHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CCCceEEEEechH-------HHHHHHHHHhCcCceeEEEEecCccCcccCcchhhhhhhHh
Confidence 45667788777543 233444 77888 55555544455666544 44432211000
Q ss_pred -CCCCCCcccCCCCCChhhhhHhHcCCCCCCCCCCCCCCCCC---CCceEEEcccCCCCCCCc--------------chH
Q psy1288 774 -TIGYFWESDYGSPANSSQFEYLLGYSPLHNIQGPNELKGKQ---YPATLLMTADHDDRVSPV--------------HSL 835 (1012)
Q Consensus 774 -~~~~~~~~~~g~~~~~~~~~~~~~~Sp~~~v~~~~~~~~~~---~~p~l~~~g~~D~rv~~~--------------~~~ 835 (1012)
..+......+|.++++ .+...+|+.+++ +. .+++.+.+|..|...+.. ++.
T Consensus 166 ~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~-------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~~~ 234 (280)
T d1dqza_ 166 DSGGYNANSMWGPSSDP----AWKRNDPMVQIP-------RLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQ 234 (280)
T ss_dssp HTTSCCHHHHHCSTTSH----HHHHTCTTTTHH-------HHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred hccCCCHhhccCCcchh----hhhhcCHHHHHH-------HhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHHHH
Confidence 0011111223444432 346778988887 43 367889999999887753 466
Q ss_pred HHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCCC
Q psy1288 836 KFAATLQEKLRDYPHQTNPLLIRIE-TKAGHGG 867 (1012)
Q Consensus 836 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~gH~~ 867 (1012)
+|.++|+++|+ +..++.+ ++.||..
T Consensus 235 ~~~~~l~~~g~-------~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 235 TFRDTYAADGG-------RNGVFNFPPNGTHSW 260 (280)
T ss_dssp HHHHHHHHTTC-------CSEEEECCSCCCSSH
T ss_pred HHHHHHHHcCC-------CeEEEEEcCCCccCc
Confidence 78889999887 5444444 4557965
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0025 Score=66.43 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=39.8
Q ss_pred CCCceEEEcccCCCCCCCc-chHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 814 QYPATLLMTADHDDRVSPV-HSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 814 ~~~p~l~~~g~~D~rv~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
..+++++.+|.+|...+.. +.++|.++||++|++ .+++|...|+-||..
T Consensus 229 ~~~~i~~~~G~~D~~~~~~~~~~~f~~~~~~~g~~-----~~~~~~~~~G~~Hsw 278 (299)
T d1pv1a_ 229 GDDRILIHVGDSDPFLEEHLKPELLLEAVKATSWQ-----DYVEIKKVHGFDHSY 278 (299)
T ss_dssp TTCCEEEECCTTCTTTTTTCCTHHHHHHHTTSTTT-----TSEEEECCTTCCSSH
T ss_pred CCcceeEecCCCCcchhhhhcHHHHHHHHHhcCCC-----cceEEEecCCCCcCH
Confidence 4578899999999988875 578899999999982 268888788878974
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=95.45 E-value=0.013 Score=58.73 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=35.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+++.|+|+++|++|.-||..++.+.++.+- - .++++++++.||.+
T Consensus 213 ~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~---~-------~~~~~~i~~~gH~~ 257 (275)
T d1a88a_ 213 RIDVPVLVAHGTDDQVVPYADAAPKSAELL---A-------NATLKSYEGLPHGM 257 (275)
T ss_dssp HCCSCEEEEEETTCSSSCSTTTHHHHHHHS---T-------TEEEEEETTCCTTH
T ss_pred hhccccceeecCCCCCcCHHHHHHHHHHhC---C-------CCEEEEECCCCCch
Confidence 567999999999999999988766654331 1 46889999999964
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=1.8 Score=44.62 Aligned_cols=200 Identities=14% Similarity=0.047 Sum_probs=96.0
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEee-CCCeEEEEecCCCCCcccCCCCC
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTH-DHKGVFYSNQEPKSKSKKHSKKN 235 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSp-DG~~l~y~~~~~~~~g~~~~~~~ 235 (1012)
..+....+++++..++..... | .+.++|..+.................|++ |++.|+....+....- .+....
T Consensus 164 ~~v~~~~~~~~~~~~~~~~~~-~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i-~~~~~~ 237 (388)
T d1erja_ 164 QDIYSLDYFPSGDKLVSGSGD-R----TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV-WDSETG 237 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETT-S----EEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEE-EETTTC
T ss_pred ccccccccccccccccccccc-e----eeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEE-eecccC
Confidence 357788999999998766532 2 78999998877654333222233445554 7776665544321000 000000
Q ss_pred ceEEEEeec------cccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccC---------cEEeeccCCCceee
Q psy1288 236 RSSAYHLTV------NVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESN---------WKTLIEENKDDVLD 300 (1012)
Q Consensus 236 ~~l~~~~~~------~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~---------~~~l~~~~~~~~~~ 300 (1012)
..+...... ....+....|+|+|+.|+..+.. ..+...|+....... ........... +.
T Consensus 238 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 312 (388)
T d1erja_ 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-VL 312 (388)
T ss_dssp CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT----SEEEEEEC---------------CEEEEEECCSSC-EE
T ss_pred ccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC----CcEEEEeccCCccccccccccccceeeecccccce-EE
Confidence 000000000 00233444688999988766542 345556654432100 00001111112 22
Q ss_pred eeEEecCCEEEEEEEcCceEEEEEEecCCCceeeeecCCceEEEe------ecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 301 WATCVANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLDVGTIVG------FSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 301 ~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~~~~v~~------~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.+.+..++.+++....++ .|.+||+.+++....+....+.+.. ..++|+++.|+-. +.. ..|.++++
T Consensus 313 ~~~~s~~~~~l~sg~~dg--~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~-s~D---g~I~iW~~ 385 (388)
T d1erja_ 313 SVATTQNDEYILSGSKDR--GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG-SGD---CKARIWKY 385 (388)
T ss_dssp EEEECGGGCEEEEEETTS--EEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE-ETT---SEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCC--EEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE-eCC---CEEEEEee
Confidence 233322233344444443 5888999888876666543333332 2467887765533 221 34666665
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=95.41 E-value=0.0059 Score=61.43 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=36.0
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+|+++|++|.-+|+.++.++.+.+. .++++++++.||..
T Consensus 206 ~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gH~~ 249 (268)
T d1j1ia_ 206 KVQVPTLVVQGKDDKVVPVETAYKFLDLID-----------DSWGYIIPHCGHWA 249 (268)
T ss_dssp TCCSCEEEEEETTCSSSCHHHHHHHHHHCT-----------TEEEEEESSCCSCH
T ss_pred hCCCCEEEEEeCCCCCCCHHHHHHHHHhCC-----------CCEEEEECCCCCch
Confidence 677999999999999999877776655431 46889999999975
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0027 Score=62.36 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
++++|+|+++|++|..+|.. . +.+++ ++ ..++++.++.||.
T Consensus 148 ~i~~P~Lii~G~~D~~~~~~--~---~~~~~--~~------~~~~~~i~~~gH~ 188 (208)
T d1imja_ 148 SVKTPALIVYGDQDPMGQTS--F---EHLKQ--LP------NHRVLIMKGAGHP 188 (208)
T ss_dssp TCCSCEEEEEETTCHHHHHH--H---HHHTT--SS------SEEEEEETTCCTT
T ss_pred ccccccccccCCcCcCCcHH--H---HHHHh--CC------CCeEEEECCCCCc
Confidence 45599999999999877743 1 22322 21 4788999999996
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.04 E-value=0.048 Score=55.21 Aligned_cols=109 Identities=12% Similarity=-0.061 Sum_probs=58.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcChhHHHHHHhC--CeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHHHHHHHc
Q psy1288 429 DGNNPCILYGYGGFAVSLQPGFSVTKIVFLRDF--NGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAAEYLIAS 506 (1012)
Q Consensus 429 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~~~l~~~ 506 (1012)
..+.| ||++||-.+....+.-......++.++ |+.|+.+++..+.. .....+. .....+....+...++.
T Consensus 3 ~~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~---~~~~~~~----~~~~~~~~e~v~~~I~~ 74 (279)
T d1ei9a_ 3 PAPLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR---EDVENSF----FLNVNSQVTTVCQILAK 74 (279)
T ss_dssp TSSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH---HHHHHHH----HSCHHHHHHHHHHHHHS
T ss_pred CCCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc---cccccch----hhhHHHHHHHHHHHHHh
Confidence 34566 556899544332222122334555544 88888888643211 1111111 01123333333333333
Q ss_pred CCCCCCcEEEEecChHHHHHHHHHhhCCC-ceeEEEEccC
Q psy1288 507 GYTQSSRLAIQGGSNGGLLTAACINQRPD-LFGAAIVQVG 545 (1012)
Q Consensus 507 ~~~d~~~i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~ 545 (1012)
...-.+++-++|||+||+++-.++.+.+. .....|...+
T Consensus 75 ~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 75 DPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp CGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred ccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 22334689999999999998888887765 3555665544
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=94.93 E-value=0.018 Score=58.38 Aligned_cols=50 Identities=8% Similarity=-0.070 Sum_probs=28.5
Q ss_pred CceEEEcccCCCCCCCcchHHHHHHHHHHhc---CCCCCCCCEEEEEeCCCCCCC
Q psy1288 816 PATLLMTADHDDRVSPVHSLKFAATLQEKLR---DYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 816 ~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
.++++.+|..|.. ...+..+...++.... .....+..+.+.+++++||..
T Consensus 206 ~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggH~w 258 (273)
T d1wb4a1 206 YFVFAATGSEDIA--YANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWW 258 (273)
T ss_dssp CEEEEEEETTCTT--HHHHHHHHHHHHTSTTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred eEEEEecCCCCcc--cccchhHHHHHHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 5566666666653 3444455444443211 112234488899999999953
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=1 Score=44.91 Aligned_cols=60 Identities=7% Similarity=0.003 Sum_probs=40.8
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceec-e--e-ecceeeeeeEEeeCCCeEEEEe
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYP-E--V-LHRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~-~--t-~~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
..+..++|||||++||-+. .+| .|+++|++++.... . . ........++|+|++..++++.
T Consensus 12 d~I~~l~fsp~~~~L~s~s-~Dg----~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg 75 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITS-WDG----SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEE-TTS----EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEE-CCC----eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEc
Confidence 4688999999999988654 333 78888887654321 1 1 1233457889999887766664
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=94.69 E-value=0.57 Score=49.16 Aligned_cols=60 Identities=7% Similarity=-0.091 Sum_probs=36.0
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECC-CCceece-e----ecceeeeeeEEeeCCCeEEEEec
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVA-TGKEYPE-V----LHRLKFVSIAWTHDHKGVFYSNQ 222 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~-tg~~~~~-t----~~~~~~~~~~WSpDG~~l~y~~~ 222 (1012)
.....+||||+++.. .+. |.+ .|++++.+ +|..... . ..+.+...++++|||+.+|.+..
T Consensus 147 ~h~v~~sPdG~~l~v-~d~-g~d--~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e 212 (365)
T d1jofa_ 147 IHGMVFDPTETYLYS-ADL-TAN--KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp EEEEEECTTSSEEEE-EET-TTT--EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCCCEEEE-eeC-CCC--EEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc
Confidence 457899999999964 443 334 56666543 3333211 1 11223456899999997766543
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=94.45 E-value=0.01 Score=61.31 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=33.5
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+|+++|++|..+++..+.++.+.+.. -.+++++++.||..
T Consensus 247 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~----------~~~~~~i~~~GH~~ 291 (310)
T d1b6ga_ 247 DWNGQTFMAIGMKDKLLGPDVMYPMKALING----------CPEPLEIADAGHFV 291 (310)
T ss_dssp TCCSEEEEEEETTCSSSSHHHHHHHHHHSTT----------CCCCEEETTCCSCG
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----------CccEEEECCCcCch
Confidence 4669999999999999998766665443322 23567899999965
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.38 E-value=1.1 Score=45.87 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=34.6
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec-ceeeeeeEEeeCCC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH-RLKFVSIAWTHDHK 215 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~-~~~~~~~~WSpDG~ 215 (1012)
.+..+.|.+||+ | |.++..+. .|+.++.++++....... ......+++++||+
T Consensus 41 ~lEG~~~D~~G~-L-y~~D~~~g---~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~ 94 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-L-FLLDVFEG---NIFKINPETKEIKRPFVSHKANPAAIKIHKDGR 94 (319)
T ss_dssp CEEEEEECTTSC-E-EEEETTTC---EEEEECTTTCCEEEEEECSSSSEEEEEECTTSC
T ss_pred CcEeCEECCCCC-E-EEEECCCC---EEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC
Confidence 456899999997 4 44554432 688889888765432222 22345688888886
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.046 Score=56.17 Aligned_cols=44 Identities=23% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+|+++|++|.-+++...+++.+. ++ -+.+++.++.||..
T Consensus 257 ~i~~Pvl~i~G~~D~~~~~~~~~~~~~~-----~~------~~~~~~i~~~gH~~ 300 (322)
T d1zd3a2 257 KILIPALMVTAEKDFVLVPQMSQHMEDW-----IP------HLKRGHIEDCGHWT 300 (322)
T ss_dssp CCCSCEEEEEETTCSSSCGGGGTTGGGT-----CT------TCEEEEETTCCSCH
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHh-----CC------CCEEEEECCCCCch
Confidence 6679999999999999998887766332 21 35778889999964
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=1.3 Score=44.28 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=41.5
Q ss_pred cCCEEEEEEEcCceEEEEEEecCCCceeeeecCC-----ceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 306 ANDKLILSYIHHVKNVMHLHDLASGKHLYTFPLD-----VGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 306 ~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~~~-----~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
+++.++ ....+ ..|.+|++.+|+..+.+... .+.+..++++|++..++......+.-..|+.+|.
T Consensus 269 ~~~~~~-s~s~D--g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 269 NKNFVI-TSSDD--GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp CSSEEE-EEETT--SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CCCeeE-EEcCC--CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 334444 33444 36888999888766555321 3457788899987666555544445567888887
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=92.90 E-value=0.22 Score=53.75 Aligned_cols=103 Identities=12% Similarity=0.002 Sum_probs=64.2
Q ss_pred CeeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcC-CCCCCCCCceEeeeEEECCCCcEEEEEEeCC--------C--
Q psy1288 111 PQRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLD-PNNLSDDGTVSLGSYSFSEDGKTLAYCLSSS--------G-- 179 (1012)
Q Consensus 111 p~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D-~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~--------G-- 179 (1012)
.+|||+++|- -+.. ...|.+.++...+...++. ++. ......++||||+++....... |
T Consensus 79 gtpDGr~lfV-~d~~---~~rVavIDl~t~k~~~ii~iP~g------~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 79 GRYDGKYLFI-NDKA---NTRVARIRLDIMKTDKITHIPNV------QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp TEEEEEEEEE-EETT---TTEEEEEETTTTEEEEEEECTTC------CCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCCEEEE-EcCC---CCEEEEEECCCCcEeeEEecCCC------CCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 4689877654 3333 2568888888877666554 331 2355789999999653332211 1
Q ss_pred ----CceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 180 ----SDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 180 ----~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
.....+..+|.++.+......-......+.++|||+++|.+...
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN 196 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC
T ss_pred cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC
Confidence 11235567898887764322223345779999999998877644
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=92.64 E-value=0.71 Score=48.41 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=36.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-ee-------------------cceeeeeeEEeeCCCeE
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VL-------------------HRLKFVSIAWTHDHKGV 217 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~-------------------~~~~~~~~~WSpDG~~l 217 (1012)
......++|||+++ |.+.+.++ +|.+++++++..... .. .......+.++|||+.|
T Consensus 194 gPr~i~f~pdg~~~-yv~~e~~~---~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 269 (365)
T d1jofa_ 194 HPRWVAMHPTGNYL-YALMEAGN---RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CEEEEEECTTSSEE-EEEETTTT---EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCceE-EEeccCCC---EEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence 35578999999965 55555443 677777766542210 00 00112457899999987
Q ss_pred EEE
Q psy1288 218 FYS 220 (1012)
Q Consensus 218 ~y~ 220 (1012)
|.+
T Consensus 270 yvs 272 (365)
T d1jofa_ 270 FAS 272 (365)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.55 E-value=1.3 Score=44.83 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=33.8
Q ss_pred eEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCC
Q psy1288 161 SYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHK 215 (1012)
Q Consensus 161 ~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~ 215 (1012)
+|.|.++...|.|+ +..+ ..|+.+|.++|+........ ..+.+.+.+||+
T Consensus 22 gp~wd~~~~~l~wv-Di~~---~~I~r~d~~~g~~~~~~~~~-~~~~i~~~~dg~ 71 (295)
T d2ghsa1 22 GPTFDPASGTAWWF-NILE---RELHELHLASGRKTVHALPF-MGSALAKISDSK 71 (295)
T ss_dssp EEEEETTTTEEEEE-EGGG---TEEEEEETTTTEEEEEECSS-CEEEEEEEETTE
T ss_pred CCeEECCCCEEEEE-ECCC---CEEEEEECCCCeEEEEECCC-CcEEEEEecCCC
Confidence 68999988888775 4322 27999999998865433332 235667777764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.34 E-value=0.59 Score=49.26 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=39.2
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceecee-------ecceeeeeeEEeeCCCeEEEEecC
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEV-------LHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t-------~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
+..+.||||| +| ++.+.+| .|+++|+.+++..... ........++|||||+.|+-.+.+
T Consensus 187 ~~~v~~s~dg-~l-asgs~Dg----~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D 252 (393)
T d1sq9a_ 187 ATSVDISERG-LI-ATGFNNG----TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252 (393)
T ss_dssp CCEEEECTTS-EE-EEECTTS----EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred EEEEEECCCC-EE-EEEeCCC----cEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC
Confidence 4568899999 44 3444433 7999999988754211 111235778999999988766543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.17 E-value=0.32 Score=51.43 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=44.8
Q ss_pred ceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee--------------cceeeeeeEEeeCCCeEEEEe
Q psy1288 156 TVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL--------------HRLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 156 ~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~--------------~~~~~~~~~WSpDG~~l~y~~ 221 (1012)
...+..++|||||++|+-...... ...|.++|+++|+...... .......++|+|||+.|+=.+
T Consensus 231 ~~~V~~l~~spdg~~l~sgs~D~t--~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s 308 (393)
T d1sq9a_ 231 SNSIRSVKFSPQGSLLAIAHDSNS--FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308 (393)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETT--EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred cceEEEcccccccceeeeecCCCC--cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence 346788999999999987665322 2478899999987643110 112257799999999776544
Q ss_pred c
Q psy1288 222 Q 222 (1012)
Q Consensus 222 ~ 222 (1012)
.
T Consensus 309 ~ 309 (393)
T d1sq9a_ 309 W 309 (393)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.15 E-value=2.2 Score=42.51 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=63.3
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCce
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRS 237 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~ 237 (1012)
+....+.+++..++-... + ..|.++|+.+++...... .......++|+|||+.|+..+.+....-. +......
T Consensus 187 ~~~~~~~~~~~~~~~~~~-d----~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~-~~~~~~~ 260 (340)
T d1tbga_ 187 VMSLSLAPDTRLFVSGAC-D----ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-DLRADQE 260 (340)
T ss_dssp EEEEEECTTSSEEEEEET-T----TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE-ETTTTEE
T ss_pred EeeeccccccceeEEeec-C----ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEE-eeccccc
Confidence 455677777777664332 2 278999999988654222 22335778999999987766544211000 0000111
Q ss_pred EEEEee-ccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCc
Q psy1288 238 SAYHLT-VNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFA 283 (1012)
Q Consensus 238 l~~~~~-~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~ 283 (1012)
+..... .....+....|+++|+.|+..+. +..|...|+.+++
T Consensus 261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp EEEECCTTCCSCEEEEEECSSSCEEEEEET----TSCEEEEETTTCC
T ss_pred ccccccccccCceEEEEECCCCCEEEEEEC----CCEEEEEECCCCc
Confidence 100000 01123444568899988777654 3457777876654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.69 E-value=5.1 Score=39.65 Aligned_cols=188 Identities=14% Similarity=0.115 Sum_probs=92.5
Q ss_pred EEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceee-cceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEE
Q psy1288 162 YSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVL-HRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAY 240 (1012)
Q Consensus 162 ~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~-~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~ 240 (1012)
..+.++|+.++..... ..|.++|+.+++...... .........|+|+++.++....+....- .+.... ..+.
T Consensus 165 ~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i-~d~~~~-~~~~ 237 (355)
T d1nexb2 165 RTVSGHGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI-WDLENG-ELMY 237 (355)
T ss_dssp EEEEEETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE-EETTTC-CEEE
T ss_pred cccccccceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeecccccceEEe-eecccc-cccc
Confidence 4567788877765432 268889998887654222 2223467899999998877665421100 000000 1111
Q ss_pred EeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceE
Q psy1288 241 HLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKN 320 (1012)
Q Consensus 241 ~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (1012)
........+. .+..+++.|+..+. +..+...|+.+.. +.+..+......-.....+ +.+++... + .
T Consensus 238 ~~~~h~~~v~--~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~l~~g~-d--~ 303 (355)
T d1nexb2 238 TLQGHTALVG--LLRLSDKFLVSAAA----DGSIRGWDANDYS----RKFSYHHTNLSAITTFYVS-DNILVSGS-E--N 303 (355)
T ss_dssp EECCCSSCCC--EEEECSSEEEEECT----TSEEEEEETTTCC----EEEEEECTTCCCCCEEEEC-SSEEEEEE-T--T
T ss_pred cccccccccc--ccccccceeeeeec----ccccccccccccc----eecccccCCceEEEEEcCC-CCEEEEEe-C--C
Confidence 1000001121 13345565544432 3457777876654 2333232222111122334 44544443 3 3
Q ss_pred EEEEEecCCCceeee-ecCCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 321 VMHLHDLASGKHLYT-FPLDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 321 ~l~~~dl~~G~~~~~-l~~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.|.+|++.+|+.... +......+..++++++ .++++.+.. ...-|+.+|.
T Consensus 304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~d-g~~~l~~~df 354 (355)
T d1nexb2 304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKD-GQSFLEILDF 354 (355)
T ss_dssp EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESS-SCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECC-CcEEEEEEeC
Confidence 688999988876432 2233456667777754 454443332 1223555553
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=90.46 E-value=0.38 Score=47.76 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=55.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCcChhHHHHHHhCCeEEEEEcCCCCCCCchhHHhhhhcCCCcchHhHHHHHH-HHHHHcCC
Q psy1288 430 GNNPCILYGYGGFAVSLQPGFSVTKIVFLRDFNGIYAIPNIRGGGEYGERWHDGGRLLNKQNVFDDFQCAA-EYLIASGY 508 (1012)
Q Consensus 430 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~a~~-~~l~~~~~ 508 (1012)
...|.++++||.........|.. +...|.. .+.|+.++.+|.+.- .....+++++.+.. +.+.+.
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~-La~~L~~-~~~V~al~~pG~~~~----------e~~~~s~~~~a~~~~~~i~~~-- 105 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTR-LAGALRG-IAPVRAVPQPGYEEG----------EPLPSSMAAVAAVQADAVIRT-- 105 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHH-HHHHHTT-TCCEEEECCTTSSTT----------CCEESSHHHHHHHHHHHHHHT--
T ss_pred CCCCeEEEECCCCCCCCHHHHHH-HHHhcCC-CceEEEEeCCCcCCC----------CCCCCCHHHHHHHHHHHHHHh--
Confidence 34688999997432222223432 3445553 688999999885421 11122344444432 233332
Q ss_pred CCCCcEEEEecChHHHHHHHHHhhC---CCceeEEEEc
Q psy1288 509 TQSSRLAIQGGSNGGLLTAACINQR---PDLFGAAIVQ 543 (1012)
Q Consensus 509 ~d~~~i~i~G~S~GG~l~~~~~~~~---p~~f~a~v~~ 543 (1012)
.....+.++|||+||.++..++.+. ......++..
T Consensus 106 ~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvll 143 (255)
T d1mo2a_ 106 QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLI 143 (255)
T ss_dssp TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEE
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEE
Confidence 2234588999999999998877653 2334444443
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=89.63 E-value=0.065 Score=54.08 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=37.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
.+..|+||++|++|.-+|+..+.++.+.+. .+++++.++.||-.-.|
T Consensus 252 ~~~~Pvlii~G~~D~~~p~~~~~~l~~~~p-----------~a~~~~i~~aGH~~~eP 298 (313)
T d1wm1a_ 252 IRHIPAVIVHGRYDMACQVQNAWDLAKAWP-----------EAELHIVEGAGHSYDEP 298 (313)
T ss_dssp GTTSCEEEEEETTCSSSCHHHHHHHHHHCT-----------TSEEEEETTCCSSTTSH
T ss_pred hCCCCEEEEEECCCCccCHHHHHHHHHHCC-----------CCEEEEECCCCCCcCCc
Confidence 356899999999999999988887765542 34788999999965443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=7.8 Score=37.42 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=37.2
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece--eecceeeeeeEEeeCCCeEEE
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE--VLHRLKFVSIAWTHDHKGVFY 219 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~--t~~~~~~~~~~WSpDG~~l~y 219 (1012)
.+..++|||||++|+-... +| .|.++|+.+++.... .........++|+|+++....
T Consensus 164 ~v~~~~~s~~~~~l~~g~~-dg----~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 222 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDV-MG----KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 222 (287)
T ss_dssp CEEEEEECTTSSEEEEEET-TS----CEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred ceeEEEeccCccccccccc-cc----cccceeecccccccccccccccccceeeeccccccccc
Confidence 4778999999999886543 33 689999998875432 222334577899999875443
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=88.93 E-value=0.087 Score=54.15 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=37.4
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGGKP 870 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~~~ 870 (1012)
.+..|+||++|++|..+|+..+.++.+.+. ..++++.+++||....|
T Consensus 253 ~~~~P~lii~G~~D~~~p~~~~~~l~~~~p-----------~a~~~~i~~aGH~~~ep 299 (313)
T d1azwa_ 253 IADIPGVIVHGRYDVVCPLQSAWDLHKAWP-----------KAQLQISPASGHSAFEP 299 (313)
T ss_dssp GTTCCEEEEEETTCSSSCHHHHHHHHHHCT-----------TSEEEEETTCCSSTTSH
T ss_pred cCCCCEEEEEECCCCCCCHHHHHHHHHHCC-----------CCEEEEECCCCCCCCCc
Confidence 456899999999999999998888765442 35788999999976544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=12 Score=36.41 Aligned_cols=176 Identities=7% Similarity=0.042 Sum_probs=94.3
Q ss_pred EEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCC--cccCC---CCCceEEEEeeccccceeeeeeecCC
Q psy1288 184 SMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSK--SKKHS---KKNRSSAYHLTVNVAPITSQYITNEG 258 (1012)
Q Consensus 184 ~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~--g~~~~---~~~~~l~~~~~~~~~~i~~~~~s~dg 258 (1012)
.|+.+++++++...+........++.|.+.++.||++....... ...++ ......+.. .+.......++.+.+
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~--~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQAPDGLAVDWIH 88 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSCCCEEEEETTT
T ss_pred eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe--CCCCCcceEEEeecc
Confidence 48889998877554322222345678888888898875321100 00000 000011100 000111122356678
Q ss_pred CEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCceEEEEEEecCCCceeeeec
Q psy1288 259 PQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHVKNVMHLHDLASGKHLYTFP 337 (1012)
Q Consensus 259 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l~ 337 (1012)
+.||+.-. ...++.++++++.. .+.++....... ..+.. ...+.+++... +...+|++.++ +|.....+-
T Consensus 89 ~~lY~~d~---~~~~I~v~~~~g~~---~~~~~~~~~~~P-~~l~vd~~~g~ly~~~~-~~~~~I~r~~~-dGs~~~~l~ 159 (266)
T d1ijqa1 89 SNIYWTDS---VLGTVSVADTKGVK---RKTLFRENGSKP-RAIVVDPVHGFMYWTDW-GTPAKIKKGGL-NGVDIYSLV 159 (266)
T ss_dssp TEEEEEET---TTTEEEEEETTSSS---EEEEEECTTCCE-EEEEEETTTTEEEEEEC-SSSCEEEEEET-TSCCEEEEE
T ss_pred ceEEEEec---CCCEEEeEecCCce---EEEEEcCCCCCc-ceEEEEcccCeEEEecc-CCCcceeEecc-CCCceeccc
Confidence 89999653 34578889887654 234444432222 23333 23367776643 23468999999 454433332
Q ss_pred -CCceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 338 -LDVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 338 -~~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
.......++++++.+++|++.-.. ...|..+|+
T Consensus 160 ~~~~~~p~gl~iD~~~~~lYw~d~~---~~~I~~~~~ 193 (266)
T d1ijqa1 160 TENIQWPNGITLDLLSGRLYWVDSK---LHSISSIDV 193 (266)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETT---TTEEEEEET
T ss_pred ccccceeeEEEeeccccEEEEecCC---cCEEEEEEC
Confidence 223334567788888888887432 247899998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.23 E-value=0.37 Score=48.44 Aligned_cols=61 Identities=15% Similarity=0.079 Sum_probs=43.0
Q ss_pred EeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecC
Q psy1288 158 SLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQE 223 (1012)
Q Consensus 158 ~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~ 223 (1012)
.+..++|||+|++||-.. .+| .|+++|+++++.+............+|+|||+.|+....+
T Consensus 253 ~v~~l~~sp~~~~lasg~-~Dg----~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAG-SDG----IISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp CEEEEEECTTTCCEEEEE-TTS----CEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred cceeEEecCCccEEEEEC-CCC----EEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence 456789999999886443 333 6999999998865422222223567899999998887644
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=87.36 E-value=6.7 Score=39.41 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=34.7
Q ss_pred eeeEEECCCCcEEEEEEeCC---CCceEEEEEEECCCCceeceeecce-----eeeeeEEeeCCCeEEEE
Q psy1288 159 LGSYSFSEDGKTLAYCLSSS---GSDWTSMHFKDVATGKEYPEVLHRL-----KFVSIAWTHDHKGVFYS 220 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~---G~~~~~L~v~dl~tg~~~~~t~~~~-----~~~~~~WSpDG~~l~y~ 220 (1012)
...++|.|||+... +.... +....+|+.+|.++++......... ...++.+.+||+.|+..
T Consensus 20 ~EGpa~d~dG~ly~-~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va 88 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYI-VAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp CEEEEECTTSCEEE-EETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred CeEeEEeCCCCEEE-EECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE
Confidence 45689999998433 32221 1112379999998887543221111 12457788888755543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.31 E-value=14 Score=36.00 Aligned_cols=150 Identities=8% Similarity=0.054 Sum_probs=77.3
Q ss_pred eEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeec-ceeeeeeEEeeCCCeEEEEecCCCCCcccCCCC-
Q psy1288 157 VSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLH-RLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKK- 234 (1012)
Q Consensus 157 ~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~-~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~- 234 (1012)
.......++|++++++..... | .|+++|+.++........ ......+.|+ ++.|+....++...-. +...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~d-~----~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iw-d~~~~ 273 (355)
T d1nexb2 202 DRIYSTIYDHERKRCISASMD-T----TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW-DANDY 273 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETT-S----CEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEE-ETTTC
T ss_pred cccccccccccceeeeccccc-c----eEEeeeccccccccccccccccccccccc--cceeeeeecccccccc-ccccc
Confidence 345678899999998876543 2 689999999886542221 2223556664 5566555433210000 0000
Q ss_pred CceEEEEeecccccee-eeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEE
Q psy1288 235 NRSSAYHLTVNVAPIT-SQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILS 313 (1012)
Q Consensus 235 ~~~l~~~~~~~~~~i~-~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 313 (1012)
...+..|. ..+. ...+++++. +++... ...|...|+.+++. ....+... ...+..+.+.+ +.+++.
T Consensus 274 ~~~~~~~~----~~~~~~~~~~~~~~-~l~~g~----d~~i~vwd~~tg~~--~~~~~~~~-~~~V~~v~~~~-~~~~~~ 340 (355)
T d1nexb2 274 SRKFSYHH----TNLSAITTFYVSDN-ILVSGS----ENQFNIYNLRSGKL--VHANILKD-ADQIWSVNFKG-KTLVAA 340 (355)
T ss_dssp CEEEEEEC----TTCCCCCEEEECSS-EEEEEE----TTEEEEEETTTCCB--CCSCTTTT-CSEEEEEEEET-TEEEEE
T ss_pred ceeccccc----CCceEEEEEcCCCC-EEEEEe----CCEEEEEECCCCCE--EEEEecCC-CCCEEEEEEcC-CeEEEE
Confidence 11111121 1111 123455555 444443 24677788877651 11111222 22233344444 677777
Q ss_pred EEcCceEEEEEEec
Q psy1288 314 YIHHVKNVMHLHDL 327 (1012)
Q Consensus 314 ~~~~g~~~l~~~dl 327 (1012)
...+|...|+++|.
T Consensus 341 ~s~dg~~~l~~~df 354 (355)
T d1nexb2 341 VEKDGQSFLEILDF 354 (355)
T ss_dssp EESSSCEEEEEEEC
T ss_pred EECCCcEEEEEEeC
Confidence 77788878888875
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.98 E-value=12 Score=34.78 Aligned_cols=212 Identities=12% Similarity=0.129 Sum_probs=112.6
Q ss_pred HHhhcccCCCCCCC-eeeCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEe
Q psy1288 98 ELTKMWDYPKYSSP-QRQGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLS 176 (1012)
Q Consensus 98 ~~~~~~~~~~~s~p-~~dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~ 176 (1012)
.+..++.-+.+++- ..+++.+.|+.... +.-.++... +++..+|+. .+. .+....-+.=.+|.|..+
T Consensus 7 ~lE~lv~ip~Y~v~Gkl~~d~ll~~~~se--G~vni~~l~--g~~~vkLtk-------ePI-~~~~~Pk~~ldfi~f~RD 74 (313)
T d2hu7a1 7 DVERLIAVEKYSLQGVVDGDKLLVVGFSE--GSVNAYLYD--GGETVKLNR-------EPI-NSVLDPHYGVGRVILVRD 74 (313)
T ss_dssp HHHHHHHSCEEEEEEEETTTEEEEEEEET--TEEEEEEES--SSSCEECCS-------SCC-SEECEECTTBSEEEEEEE
T ss_pred HHHHHhcccceeEEEEecCCcEEEEEecc--ceEEEEEEe--CCEEEEEec-------ccc-cCcCCCccCcceEEEEee
Confidence 33333443444432 35677677666543 245566553 455566554 111 123334444567888887
Q ss_pred C-CCCceEEEEEEECC-CCceeceeecc-eeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceEEEEeec-cc---cce
Q psy1288 177 S-SGSDWTSMHFKDVA-TGKEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSSAYHLTV-NV---API 249 (1012)
Q Consensus 177 ~-~G~~~~~L~v~dl~-tg~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l~~~~~~-~~---~~i 249 (1012)
. .|.+...||+.++. -|+..+..... .+..+.+ -|++.++|+.... +..-+|.... .. ..+
T Consensus 75 V~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~--yddk~vvF~Gase----------d~~~LYviegGklrkL~~v 142 (313)
T d2hu7a1 75 VSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGV--DTGEAVVFTGATE----------DRVALYALDGGGLRELARL 142 (313)
T ss_dssp CSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEE--ECSSCEEEEEECS----------SCEEEEEEETTEEEEEEEE
T ss_pred hhcCcceeeEEEEccCCCCeeeEecCCceEEEEEee--ecCceEEEecccC----------CceEEEEEeCCceeeeccC
Confidence 5 58899999999997 35544433333 4444444 4899999996421 1122222211 11 111
Q ss_pred e-eeee-ecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEec
Q psy1288 250 T-SQYI-TNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDL 327 (1012)
Q Consensus 250 ~-~~~~-s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl 327 (1012)
+ +..+ .-.|+.+.=+.-..+....++..|+.++. -+++...+..+.. .....++.+...+..-+.+.+..+|+
T Consensus 143 PpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~----lri~tpkeGS~~~-ay~~~gnKV~sdyEt~gEsywit~D~ 217 (313)
T d2hu7a1 143 PGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGEGSFSS-ASISPGMKVTAGLETAREARLVTVDP 217 (313)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEE----EEEECCSSEEEEE-EEECTTSCEEEEEEESSCEEEEEECT
T ss_pred CCcceEEeccCCeEEEEeeecCCcceEEEEecccCC----EEEecCCCCcccc-eeEccCceeeeccCCCCceEEEEEec
Confidence 1 1111 22455554333323334568888887766 3444444444433 34445577755565667777778899
Q ss_pred CCCceeeeecCC
Q psy1288 328 ASGKHLYTFPLD 339 (1012)
Q Consensus 328 ~~G~~~~~l~~~ 339 (1012)
++++. ..+.+|
T Consensus 218 ~s~~y-erve~P 228 (313)
T d2hu7a1 218 RDGSV-EDLELP 228 (313)
T ss_dssp TTCCE-EECCCS
T ss_pred ccCce-eeeecC
Confidence 77764 455555
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.70 E-value=15 Score=35.60 Aligned_cols=192 Identities=10% Similarity=0.049 Sum_probs=104.1
Q ss_pred eCCEEEEEEEcCCCCeeEEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCC
Q psy1288 114 QGDHYFFFHNTGLQNHSVMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATG 193 (1012)
Q Consensus 114 dG~~~yy~~~~~~~~~~~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg 193 (1012)
.++++||.-.. ...|++.+..++..+.+++.+ -....+.++.+-++.|.++-... ..|.+.++++.
T Consensus 46 ~~~~iywsd~~----~~~I~~~~l~g~~~~~v~~~~------~~~p~~iAvD~~~~~lY~~d~~~----~~I~~~~~dg~ 111 (263)
T d1npea_ 46 VDKVVYWTDIS----EPSIGRASLHGGEPTTIIRQD------LGSPEGIALDHLGRTIFWTDSQL----DRIEVAKMDGT 111 (263)
T ss_dssp TTTEEEEEETT----TTEEEEEESSSCCCEEEECTT------CCCEEEEEEETTTTEEEEEETTT----TEEEEEETTSC
T ss_pred CCCEEEEEECC----CCeEEEEEcccCCcEEEEEec------cccccEEEEeccCCeEEEeccCC----CEEEEEecCCc
Confidence 36788875322 357999888777777776532 12345566766677777654322 27899999876
Q ss_pred ceeceeecc-eeeeeeEEeeCCCeEEEEecCCCC--Cc--ccCCCCCceEEEEeeccccceeeeeeecCCCEEEEEECCC
Q psy1288 194 KEYPEVLHR-LKFVSIAWTHDHKGVFYSNQEPKS--KS--KKHSKKNRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKD 268 (1012)
Q Consensus 194 ~~~~~t~~~-~~~~~~~WSpDG~~l~y~~~~~~~--~g--~~~~~~~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~ 268 (1012)
....+.... ....+++-.|.+..||++...... .. ..++. ....+.. .+........+++.+++||+.-.
T Consensus 112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i~~--~~~~~P~glaiD~~~~~lYw~d~-- 186 (263)
T d1npea_ 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQ--DNLGLPNGLTFDAFSSQLCWVDA-- 186 (263)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEEC--TTCSCEEEEEEETTTTEEEEEET--
T ss_pred eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Cceeeee--ecccccceEEEeecCcEEEEEeC--
Confidence 543322111 223566777777777777532110 00 01111 1111111 01111112236678889999753
Q ss_pred CCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEEecCCEEEEEEEcCceEEEEEEecCCCcee
Q psy1288 269 APNYRLITIDFDNFAESNWKTLIEENKDDVLDWATCVANDKLILSYIHHVKNVMHLHDLASGKHL 333 (1012)
Q Consensus 269 ~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~dl~~G~~~ 333 (1012)
....+.++++++.. .+.++... ... ..+...+ +.||+.-.. ...|++++..+|+..
T Consensus 187 -~~~~I~~~~~~g~~---~~~v~~~~-~~P-~~lav~~-~~lYwtd~~--~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 187 -GTHRAECLNPAQPG---RRKVLEGL-QYP-FAVTSYG-KNLYYTDWK--TNSVIAMDLAISKEM 242 (263)
T ss_dssp -TTTEEEEEETTEEE---EEEEEECC-CSE-EEEEEET-TEEEEEETT--TTEEEEEETTTTEEE
T ss_pred -CCCEEEEEECCCCC---eEEEECCC-CCc-EEEEEEC-CEEEEEECC--CCEEEEEECCCCccc
Confidence 34578899987654 23444332 222 2344443 777765443 346888888766543
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.58 E-value=0.72 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.0
Q ss_pred CCcEEEEecChHHHHHHHHHhh
Q psy1288 511 SSRLAIQGGSNGGLLTAACINQ 532 (1012)
Q Consensus 511 ~~~i~i~G~S~GG~l~~~~~~~ 532 (1012)
..+|-++|||+||.-+-.++..
T Consensus 104 ~~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 104 GGRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp TCCEEEEEETTHHHHHHHHHHH
T ss_pred CCceeEeecccccHHHHHHHHH
Confidence 3589999999999876555543
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=86.19 E-value=0.22 Score=47.99 Aligned_cols=44 Identities=7% Similarity=-0.111 Sum_probs=35.7
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
.+..|+|+++|++|.-+|+..+.++.+.+. .+++++.++.||..
T Consensus 195 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~-----------~~~~~~i~~~gH~~ 238 (258)
T d1xkla_ 195 FGSVKRVYIVCTEDKGIPEEFQRWQIDNIG-----------VTEAIEIKGADHMA 238 (258)
T ss_dssp GGGSCEEEEEETTCTTTTHHHHHHHHHHHC-----------CSEEEEETTCCSCH
T ss_pred ccccceeEeeecCCCCCCHHHHHHHHHHCC-----------CCEEEEECCCCCch
Confidence 677999999999999999877777655431 45788999999974
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=86.14 E-value=0.11 Score=51.32 Aligned_cols=44 Identities=16% Similarity=-0.074 Sum_probs=34.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+||++|++|.-||+..+.++.+.+. ..+++++++.||..
T Consensus 192 ~i~~P~lii~G~~D~~~p~~~~~~l~~~~~-----------~~~~~~i~~~gH~~ 235 (256)
T d1m33a_ 192 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWP-----------HSESYIFAKAAHAP 235 (256)
T ss_dssp GCCSCEEEEEETTCSSSCGGGCC-CTTTCT-----------TCEEEEETTCCSCH
T ss_pred hccCCccccccccCCCCCHHHHHHHHHHCC-----------CCEEEEECCCCCch
Confidence 677999999999999999888777643221 34788899999964
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.71 E-value=17 Score=35.22 Aligned_cols=186 Identities=9% Similarity=0.088 Sum_probs=98.0
Q ss_pred CcEEEEEEeCCCCceEEEEEEECCCCceec------eeecceeeeeeEEeeCCCeEEEEecCCCCCcc--cCCCCCceEE
Q psy1288 168 GKTLAYCLSSSGSDWTSMHFKDVATGKEYP------EVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSK--KHSKKNRSSA 239 (1012)
Q Consensus 168 Gk~iAy~~~~~G~~~~~L~v~dl~tg~~~~------~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~--~~~~~~~~l~ 239 (1012)
|.+|.|+.. ..|..+++++..... +.........+++.+-++.||++......... .++.. ...+
T Consensus 1 ~~fLl~s~~------~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~~~v 73 (263)
T d1npea_ 1 GTHLLFAQT------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTI 73 (263)
T ss_dssp CEEEEEEEE------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEE
T ss_pred CCEEEEeCC------CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-cEEE
Confidence 567777764 378888887665321 11112223456666667788776433211000 11111 1111
Q ss_pred EEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-ecCCEEEEEEEcCc
Q psy1288 240 YHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-VANDKLILSYIHHV 318 (1012)
Q Consensus 240 ~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 318 (1012)
.. .+.......+++.-++.||+.-. ...++.+++++... .+.|+...-.. ...+.+ +..+.+++......
T Consensus 74 ~~--~~~~~p~~iAvD~~~~~lY~~d~---~~~~I~~~~~dg~~---~~~l~~~~l~~-p~~l~vdp~~g~ly~t~~~~~ 144 (263)
T d1npea_ 74 IR--QDLGSPEGIALDHLGRTIFWTDS---QLDRIEVAKMDGTQ---RRVLFDTGLVN-PRGIVTDPVRGNLYWTDWNRD 144 (263)
T ss_dssp EC--TTCCCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS---CEEEECSSCSS-EEEEEEETTTTEEEEEECCSS
T ss_pred EE--eccccccEEEEeccCCeEEEecc---CCCEEEEEecCCce---EEEEecccccC-CcEEEEecccCcEEEeecCCC
Confidence 10 01111122235556888998753 34578899887644 23454433222 233333 33466776654444
Q ss_pred eEEEEEEecCCCceeeeecC-CceEEEeecccccCcEEEEEecCCCCCcEEEEEeC
Q psy1288 319 KNVMHLHDLASGKHLYTFPL-DVGTIVGFSGKKKYSEIFYSFMSFLQPTIIFHCNI 373 (1012)
Q Consensus 319 ~~~l~~~dl~~G~~~~~l~~-~~~~v~~~~~spdg~~l~~~~ss~~~p~~l~~~d~ 373 (1012)
...|++.++ +|.....+.. ......+++.++.+++|++.-.. -..|..+|+
T Consensus 145 ~~~I~r~~~-dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~---~~~I~~~~~ 196 (263)
T d1npea_ 145 NPKIETSHM-DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG---THRAECLNP 196 (263)
T ss_dssp SCEEEEEET-TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT---TTEEEEEET
T ss_pred CcEEEEecC-CCCCceeeeeecccccceEEEeecCcEEEEEeCC---CCEEEEEEC
Confidence 467999998 4544334332 23334467777888888876432 246888888
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=85.16 E-value=0.29 Score=48.73 Aligned_cols=45 Identities=11% Similarity=0.012 Sum_probs=35.2
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
++..|+||++|++|.-+|..+..++.+ +..- .+++++.++.||.+
T Consensus 232 ~~~~Pvlii~G~~D~~~~~~~~~~~~~---~~~~-------~~~~~~i~~~gH~~ 276 (293)
T d1ehya_ 232 MSDLPVTMIWGLGDTCVPYAPLIEFVP---KYYS-------NYTMETIEDCGHFL 276 (293)
T ss_dssp CBCSCEEEEEECCSSCCTTHHHHHHHH---HHBS-------SEEEEEETTCCSCH
T ss_pred ccCCceEEEEeCCCCCcCHHHHHHHHH---HhCC-------CCEEEEECCCCCch
Confidence 577899999999999999876665543 3322 67899999999964
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=84.87 E-value=0.16 Score=53.19 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=34.6
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHG 866 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~ 866 (1012)
+|+.|+|+++|++|.-||+.+.+.+...|.. -+.++++++.||-
T Consensus 311 ~i~vPvL~i~G~~D~~~~~~~~~~l~~~lp~----------~~~~~~i~~~GH~ 354 (377)
T d1k8qa_ 311 DMHVPIAVWNGGNDLLADPHDVDLLLSKLPN----------LIYHRKIPPYNHL 354 (377)
T ss_dssp GCCSCEEEEEETTCSSSCHHHHHHHHTTCTT----------EEEEEEETTCCTT
T ss_pred hCCCCEEEEEeCCCCccCHHHHHHHHHHCCC----------CeEEEEeCCCCCc
Confidence 6789999999999999998777665444322 3577888999995
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.65 E-value=0.95 Score=48.88 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=78.0
Q ss_pred eEEEEEECCCCceEEEEEEEeCCCCCCCCCcEEEEEcCCCCCCCCCC--------------cC--hhHHHHHHhCCeEEE
Q psy1288 403 TKQVFYPSKDGTKIPMFILSRKGAQLDGNNPCILYGYGGFAVSLQPG--------------FS--VTKIVFLRDFNGIYA 466 (1012)
Q Consensus 403 ~~~v~~~s~DG~~i~~~l~~p~~~~~~~~~P~vv~~hGg~~~~~~~~--------------~~--~~~~~~l~~~G~~v~ 466 (1012)
...-.+...++..+.+|.+.... + ...+|+++++-||++.+...+ .. ..-..|.. -..++
T Consensus 21 ~ysGyl~~~~~~~lffw~~~s~~-~-~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~--~anll 96 (452)
T d1ivya_ 21 QYSGYLKSSGSKHLHYWFVESQK-D-PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNL--IANVL 96 (452)
T ss_dssp EEEEEEECSTTEEEEEEEECCSS-C-GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGG--SSEEE
T ss_pred ceeeeeecCCCceEEEEEEEcCC-C-CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhc--ccCEE
Confidence 33344555677889888875443 2 356899999999998654211 10 01123443 35666
Q ss_pred EEcCCCCCCCchhHHhhhhcCCCc---chHhHHHHHH-HHHHHcCCCCCCcEEEEecChHHHHHHHHHhh---CCC-cee
Q psy1288 467 IPNIRGGGEYGERWHDGGRLLNKQ---NVFDDFQCAA-EYLIASGYTQSSRLAIQGGSNGGLLTAACINQ---RPD-LFG 538 (1012)
Q Consensus 467 ~~d~RG~g~~g~~~~~~~~~~~~~---~~~~D~~a~~-~~l~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p~-~f~ 538 (1012)
.+|..-+.|+...- ...... ....|+..++ +++...+.....++.|.|.||||..+..++.. .+. -++
T Consensus 97 fIDqPvGtGfS~~~----~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~ 172 (452)
T d1ivya_ 97 YLESPAGVGFSYSD----DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQ 172 (452)
T ss_dssp EECCSTTSTTCEES----SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEE
T ss_pred EEecCCCcccccCC----CCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCccccc
Confidence 77876555554321 111111 1234554444 45555555566789999999999877666532 232 356
Q ss_pred EEEEccC
Q psy1288 539 AAIVQVG 545 (1012)
Q Consensus 539 a~v~~~~ 545 (1012)
.++...|
T Consensus 173 Gi~igng 179 (452)
T d1ivya_ 173 GLAVGNG 179 (452)
T ss_dssp EEEEESC
T ss_pred ceEcCCC
Confidence 6777766
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=84.50 E-value=1.5 Score=46.93 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=41.3
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceece-eec-ceeeeeeEEeeCCCeEEEEe
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPE-VLH-RLKFVSIAWTHDHKGVFYSN 221 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~-t~~-~~~~~~~~WSpDG~~l~y~~ 221 (1012)
++....+||||+| |..+..++ +|.++|+++++..+. .++ .....+++++|||+++|...
T Consensus 74 ~s~t~gtpDGr~l-fV~d~~~~---rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~ 134 (441)
T d1qnia2 74 ISMTDGRYDGKYL-FINDKANT---RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFC 134 (441)
T ss_dssp EEEETTEEEEEEE-EEEETTTT---EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEE
T ss_pred cceecccCCCCEE-EEEcCCCC---EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEe
Confidence 4455568999997 55555433 799999999987653 333 23356789999999876553
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.55 E-value=21 Score=34.53 Aligned_cols=218 Identities=10% Similarity=0.026 Sum_probs=106.0
Q ss_pred EEEEEeCCCCceEEEcCCCCCCCCCceEeeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCce--ecee--ecc-eee
Q psy1288 131 VMYIQDSLDGEARVFLDPNNLSDDGTVSLGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKE--YPEV--LHR-LKF 205 (1012)
Q Consensus 131 ~l~~~~~~~g~~~~L~D~n~la~~g~~~i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~--~~~t--~~~-~~~ 205 (1012)
.|.+.+..+.....++. +.....++.+.+..++|.|+ +... ..|+..++++... ...+ ... ...
T Consensus 11 ~I~~~~l~~~~~~~~~~-------~~~~~~~id~d~~~~~lYw~-D~~~---~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-------NLRNVVALDTEVASNRIYWS-DLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp SEEEEETTSCCCEEEEC-------SCSSEEEEEEETTTTEEEEE-ETTT---TEEEEEEC--------CEEEECSSCSCC
T ss_pred eEEEEECCCCcceeeeC-------CCCceEEEEEEeCCCEEEEE-ECCC---CEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 37778877666666643 11123467788888888665 3322 1677777764321 1111 111 112
Q ss_pred eeeEEeeCCCeEEEEecCCCCCcccCCCC-CceEEEEeeccccceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcc
Q psy1288 206 VSIAWTHDHKGVFYSNQEPKSKSKKHSKK-NRSSAYHLTVNVAPITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAE 284 (1012)
Q Consensus 206 ~~~~WSpDG~~l~y~~~~~~~~g~~~~~~-~~~l~~~~~~~~~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~ 284 (1012)
.+++.-+-++.||++..........+.+. ....+... +........+.|..+.||+.-.. ...+|++++++...
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~--~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs~- 154 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD- 154 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCC-
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcC--CCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCCc-
Confidence 34454445777888753211100000011 11111111 11111223467777888887422 34689999987654
Q ss_pred cCcEEeeccCCCceeeeeEEe-cCCEEEEEEEcCceEEEEEEecCCCceeeee-cCCceEEEeecccccCcEEEEEecCC
Q psy1288 285 SNWKTLIEENKDDVLDWATCV-ANDKLILSYIHHVKNVMHLHDLASGKHLYTF-PLDVGTIVGFSGKKKYSEIFYSFMSF 362 (1012)
Q Consensus 285 ~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~l~~~dl~~G~~~~~l-~~~~~~v~~~~~spdg~~l~~~~ss~ 362 (1012)
.+.++.+. -.....+.+. .++.||+... ....|..++++ |.....+ ........+++.+.+++.|+++-.
T Consensus 155 --~~~l~~~~-~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~d-G~~~~~~~~~~~~~~~p~~lav~~~~ly~td~-- 226 (266)
T d1ijqa1 155 --IYSLVTEN-IQWPNGITLDLLSGRLYWVDS--KLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-- 226 (266)
T ss_dssp --EEEEECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEETTEEEEEET--
T ss_pred --eecccccc-cceeeEEEeeccccEEEEecC--CcCEEEEEECC-CCCEEEEEeCCCcccccEEEEEECCEEEEEEC--
Confidence 34455433 1222334333 3467887643 34578889984 5433332 221110012223344677776542
Q ss_pred CCCcEEEEEeC
Q psy1288 363 LQPTIIFHCNI 373 (1012)
Q Consensus 363 ~~p~~l~~~d~ 373 (1012)
....|++++.
T Consensus 227 -~~~~I~~~~~ 236 (266)
T d1ijqa1 227 -INEAIFSANR 236 (266)
T ss_dssp -TTTEEEEEET
T ss_pred -CCCeEEEEEC
Confidence 3357999987
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=83.26 E-value=0.37 Score=47.45 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=35.1
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
+++.|+|+++|++|.-+|+.+..+++. +..- .++++++++.||..
T Consensus 215 ~i~~P~lii~g~~D~~~~~~~~~~~~~---~~~~-------~~~~~~i~~~gH~~ 259 (277)
T d1brta_ 215 RIDVPALILHGTGDRTLPIENTARVFH---KALP-------SAEYVEVEGAPHGL 259 (277)
T ss_dssp GCCSCEEEEEETTCSSSCGGGTHHHHH---HHCT-------TSEEEEETTCCTTH
T ss_pred hcCccceeEeecCCCCcCHHHHHHHHH---HhCC-------CCEEEEECCCCCch
Confidence 678999999999999999877665543 2211 45888999999975
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=81.35 E-value=0.32 Score=48.11 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=31.6
Q ss_pred CCCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q psy1288 812 GKQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGG 867 (1012)
Q Consensus 812 ~~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~ 867 (1012)
.++..|+|+++|++|..+| .++.++.+.+ - .++++++++.||..
T Consensus 227 ~~i~~P~l~i~G~~D~~~~-~~~~~~~~~~----~-------~~~~~~~~~~gH~~ 270 (290)
T d1mtza_ 227 SAIKIPTLITVGEYDEVTP-NVARVIHEKI----A-------GSELHVFRDCSHLT 270 (290)
T ss_dssp GGCCSCEEEEEETTCSSCH-HHHHHHHHHS----T-------TCEEEEETTCCSCH
T ss_pred hcccceEEEEEeCCCCCCH-HHHHHHHHHC----C-------CCEEEEECCCCCch
Confidence 3788999999999998765 3444433322 1 35788999999975
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.59 E-value=25 Score=33.42 Aligned_cols=176 Identities=9% Similarity=-0.011 Sum_probs=85.5
Q ss_pred eeeEEECCCCcEEEEEEeCCCCceEEEEEEECCCCceeceeecceeeeeeEEeeCCCeEEEEecCCCCCcccCCCCCceE
Q psy1288 159 LGSYSFSEDGKTLAYCLSSSGSDWTSMHFKDVATGKEYPEVLHRLKFVSIAWTHDHKGVFYSNQEPKSKSKKHSKKNRSS 238 (1012)
Q Consensus 159 i~~~~~SPDGk~iAy~~~~~G~~~~~L~v~dl~tg~~~~~t~~~~~~~~~~WSpDG~~l~y~~~~~~~~g~~~~~~~~~l 238 (1012)
.....+++||..++.... ..+.+++..+++........ ....+.+++++.++....+......-+. .....
T Consensus 83 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~v~~~~~-~~~~~ 153 (287)
T d1pgua2 83 PKVASANNDGFTAVLTND------DDLLILQSFTGDIIKSVRLN--SPGSAVSLSQNYVAVGLEEGNTIQVFKL-SDLEV 153 (287)
T ss_dssp EEEEEECSSSEEEEEETT------SEEEEEETTTCCEEEEEECS--SCEEEEEECSSEEEEEETTTSCEEEEET-TEEEE
T ss_pred eeeeeeccCCceEEEeec------ccceeeeccceeeeeecccc--ceeeeeeccCcceeeeccccceeeeeec-cccce
Confidence 345678899887765321 15778888888765422211 1335678888888777654211000000 00001
Q ss_pred EEEeeccc-cceeeeeeecCCCEEEEEECCCCCCceEEEEeCCCCcccCcEEeeccCCCceeeeeEE-----------ec
Q psy1288 239 AYHLTVNV-APITSQYITNEGPQFVFKTNKDAPNYRLITIDFDNFAESNWKTLIEENKDDVLDWATC-----------VA 306 (1012)
Q Consensus 239 ~~~~~~~~-~~i~~~~~s~dg~~l~~~tn~~~~~~~L~~~dl~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~ 306 (1012)
........ ..+....|+|+|+.|+..+.. ..+...|+..... ........... +..+.+ .+
T Consensus 154 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~~~~--~~~~~~~h~~~-v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 154 SFDLKTPLRAKPSYISISPSETYIAAGDVM----GKILLYDLQSREV--KTSRWAFRTSK-INAISWKPAEKGANEEEIE 226 (287)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEE--EECCSCCCSSC-EEEEEECCCC------CCS
T ss_pred eeeeeeccCCceeEEEeccCcccccccccc----ccccceeeccccc--ccccccccccc-cceeeecccccccccccCC
Confidence 11100000 223444689999988777643 3566677655431 00001111111 111111 12
Q ss_pred CCEEEEEEEcCceEEEEEEecCCCc-eeeeecCCceEEEeecccccCc
Q psy1288 307 NDKLILSYIHHVKNVMHLHDLASGK-HLYTFPLDVGTIVGFSGKKKYS 353 (1012)
Q Consensus 307 ~~~l~~~~~~~g~~~l~~~dl~~G~-~~~~l~~~~~~v~~~~~spdg~ 353 (1012)
..++++...++ .+++|++..+. ....+......+..+.|++++.
T Consensus 227 -~~~l~sgs~D~--~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~ 271 (287)
T d1pgua2 227 -EDLVATGSLDT--NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 271 (287)
T ss_dssp -CCEEEEEETTS--CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred -CCeeEeecCCC--eEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE
Confidence 23344444443 57888886543 3233332345577788888763
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=80.51 E-value=0.2 Score=50.08 Aligned_cols=45 Identities=13% Similarity=-0.005 Sum_probs=35.9
Q ss_pred CCCCceEEEcccCCCCCCCcchHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q psy1288 813 KQYPATLLMTADHDDRVSPVHSLKFAATLQEKLRDYPHQTNPLLIRIETKAGHGGG 868 (1012)
Q Consensus 813 ~~~~p~l~~~g~~D~rv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~gH~~~ 868 (1012)
++..|+||++|++|.-+|+..++++.+.+. -+++++.++.||...
T Consensus 228 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~-----------~~~~~~i~~~gH~~~ 272 (291)
T d1bn7a_ 228 QSPVPKLLFWGTPGVLIPPAEAARLAESLP-----------NCKTVDIGPGLHYLQ 272 (291)
T ss_dssp HCCSCEEEEEEEECSSSCHHHHHHHHHHST-----------TEEEEEEEEESSCGG
T ss_pred cCCCCEEEEEeCCCCCcCHHHHHHHHHHCC-----------CCEEEEECCCCCchH
Confidence 466999999999999999888877755442 357888899999653
|