Psyllid ID: psy1289


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80-------
MASLVSLVGQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS
ccccccccccccEEccccccccccccccccccccccccccHHHHHHHcHHHHHHHHccccHHHHHHccccccccccccccccccccc
cccccccccccccccccccHccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccc
MASLVSLVgqqqcfsphlkmcrgvtpyditaqpnipgitslssLEAALPYFEMIaeskcspraKQFLCSllepecqpngqnilppfs
MASLVSLVGQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLepecqpngqnilppfs
MASLVSLVGQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS
*****SLVGQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLL****************
*********Q*QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQ*ILPPF*
*********QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS
********GQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNI*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASLVSLVGQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query87 2.2.26 [Sep-21-2011]
Q9NBW1 705 Frizzled-4 OS=Drosophila no N/A 0.770 0.095 0.338 0.0006
>sp|Q9NBW1|FRIZ4_DROME Frizzled-4 OS=Drosophila melanogaster GN=fz4 PE=2 SV=2 Back     alignment and function desciption
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 11  QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSL 70
           +QC +  ++MCR +  Y+ T+ PN+ G    + +E  L  F  + E  CS + K FLC+ 
Sbjct: 44  RQCETIRIEMCRKIG-YNETSMPNLVGNEMQTDVEYTLQTFAPLIEYDCSSQLKLFLCAA 102

Query: 71  LEPECQPN 78
             P C P 
Sbjct: 103 YVPMCTPK 110




Receptor for Wnt proteins. Most of frizzled receptors are coupled to the beta-catenin canonical signaling pathway, which leads to the activation of disheveled proteins, inhibition of GSK-3 kinase, nuclear accumulation of beta-catenin and activation of Wnt target genes. A second signaling pathway involving PKC and calcium fluxes has been seen for some family members, but it is not yet clear if it represents a distinct pathway or if it can be integrated in the canonical pathway, as PKC seems to be required for Wnt-mediated inactivation of GSK-3 kinase. Both pathways seem to involve interactions with G-proteins. May be involved in transduction and intercellular transmission of polarity information during tissue morphogenesis and/or in differentiated tissues. Required to coordinate the cytoskeletons of epidermal cells to produce a parallel array of cuticular hairs and bristles.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query87
321459294 514 hypothetical protein DAPPUDRAFT_328169 [ 0.839 0.142 0.445 6e-10
357606475 984 hypothetical protein KGM_17241 [Danaus p 0.770 0.068 0.434 2e-09
391343992 260 PREDICTED: atrial natriuretic peptide-co 0.827 0.276 0.397 5e-08
241236741122 conserved hypothetical protein [Ixodes s 0.919 0.655 0.382 6e-07
312382705 801 hypothetical protein AND_04426 [Anophele 0.770 0.083 0.438 2e-06
195031966 774 GH11153 [Drosophila grimshawi] gi|193904 0.793 0.089 0.418 4e-06
157119641 650 hypothetical protein AaeL_AAEL008735 [Ae 0.770 0.103 0.397 4e-06
195437704 864 GK24663 [Drosophila willistoni] gi|19416 0.793 0.079 0.397 5e-06
242025666167 low-density lipoprotein receptor, putati 0.379 0.197 0.696 6e-06
170052530 766 conserved hypothetical protein [Culex qu 0.770 0.087 0.397 1e-05
>gi|321459294|gb|EFX70349.1| hypothetical protein DAPPUDRAFT_328169 [Daphnia pulex] Back     alignment and taxonomy information
 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 12  QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLL 71
           +C    L  CRGV PY  T  PN  G  + +    ++PYFE+IAES+C PR +Q+ C++L
Sbjct: 387 ECIRRQLPFCRGVLPYSETILPNWVGDNTEAERNFSVPYFEIIAESECHPRVQQYACAVL 446

Query: 72  EPECQPNGQNILPP 85
           EP C+ +G + LPP
Sbjct: 447 EPPCRGSGIS-LPP 459




Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606475|gb|EHJ65086.1| hypothetical protein KGM_17241 [Danaus plexippus] Back     alignment and taxonomy information
>gi|391343992|ref|XP_003746289.1| PREDICTED: atrial natriuretic peptide-converting enzyme-like [Metaseiulus occidentalis] Back     alignment and taxonomy information
>gi|241236741|ref|XP_002400931.1| conserved hypothetical protein [Ixodes scapularis] gi|215496110|gb|EEC05751.1| conserved hypothetical protein [Ixodes scapularis] Back     alignment and taxonomy information
>gi|312382705|gb|EFR28070.1| hypothetical protein AND_04426 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|195031966|ref|XP_001988419.1| GH11153 [Drosophila grimshawi] gi|193904419|gb|EDW03286.1| GH11153 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|157119641|ref|XP_001653431.1| hypothetical protein AaeL_AAEL008735 [Aedes aegypti] gi|108875240|gb|EAT39465.1| AAEL008735-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195437704|ref|XP_002066780.1| GK24663 [Drosophila willistoni] gi|194162865|gb|EDW77766.1| GK24663 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|242025666|ref|XP_002433245.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212518786|gb|EEB20507.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|170052530|ref|XP_001862263.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873418|gb|EDS36801.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query87
UNIPROTKB|I3LRD8 591 FZD9 "Uncharacterized protein" 0.862 0.126 0.328 1e-05
MGI|MGI:1313278 592 Fzd9 "frizzled homolog 9 (Dros 0.862 0.126 0.328 1e-05
RGD|628817 592 Fzd9 "frizzled family receptor 0.862 0.126 0.328 1e-05
FB|FBgn0030027 1056 CG1632 [Drosophila melanogaste 0.839 0.069 0.324 1.3e-05
UNIPROTKB|O00144 591 FZD9 "Frizzled-9" [Homo sapien 0.862 0.126 0.328 1.3e-05
UNIPROTKB|E2RAF3 594 FZD9 "Uncharacterized protein" 0.862 0.126 0.328 1.3e-05
UNIPROTKB|F1MBL4 589 FZD9 "Uncharacterized protein" 0.862 0.127 0.328 2.7e-05
FB|FBgn0027343 581 fz3 "frizzled 3" [Drosophila m 0.735 0.110 0.405 4.4e-05
FB|FBgn0027342 705 fz4 "frizzled 4" [Drosophila m 0.758 0.093 0.343 4.4e-05
RGD|1307477590 Mfrp "membrane frizzled-relate 0.816 0.120 0.351 4.5e-05
UNIPROTKB|I3LRD8 FZD9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 25/76 (32%), Positives = 36/76 (47%)

Query:     9 GQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLC 68
             G   C +  + MCRG+  Y++T  PN+ G TS +   A L  F  + +  C    + FLC
Sbjct:    36 GPAPCQAVEIPMCRGIG-YNLTRMPNLLGHTSQAEAAAELAEFAPLVQYGCHSHLRFFLC 94

Query:    69 SLLEPECQPNGQNILP 84
             SL  P C       +P
Sbjct:    95 SLYAPMCTDQVSTPIP 110




GO:0048471 "perinuclear region of cytoplasm" evidence=IEA
GO:0046982 "protein heterodimerization activity" evidence=IEA
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0031527 "filopodium membrane" evidence=IEA
GO:0030183 "B cell differentiation" evidence=IEA
GO:0017147 "Wnt-protein binding" evidence=IEA
GO:0009986 "cell surface" evidence=IEA
GO:0007611 "learning or memory" evidence=IEA
GO:0007405 "neuroblast proliferation" evidence=IEA
GO:0016055 "Wnt receptor signaling pathway" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0004930 "G-protein coupled receptor activity" evidence=IEA
GO:0042813 "Wnt-activated receptor activity" evidence=IEA
MGI|MGI:1313278 Fzd9 "frizzled homolog 9 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|628817 Fzd9 "frizzled family receptor 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0030027 CG1632 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O00144 FZD9 "Frizzled-9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAF3 FZD9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBL4 FZD9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0027343 fz3 "frizzled 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0027342 fz4 "frizzled 4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1307477 Mfrp "membrane frizzled-related protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query87
cd07066119 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, 9e-12
pfam01392108 pfam01392, Fz, Fz domain 1e-05
smart00063113 smart00063, FRI, Frizzled 2e-05
cd07448126 cd07448, CRD_FZ4, Cysteine-rich Wnt-binding domain 4e-05
cd07454124 cd07454, CRD_LIN_17, Cysteine-rich domain (CRD) of 5e-05
cd07460127 cd07460, CRD_FZ5, Cysteine-rich Wnt-binding domain 4e-04
cd07456120 cd07456, CRD_FZ5_like, Cysteine-rich Wnt-binding d 6e-04
cd07463127 cd07463, CRD_FZ9, Cysteine-rich Wnt-binding domain 0.001
cd07457121 cd07457, CRD_FZ9_like, Cysteine-rich Wnt-binding d 0.002
cd07449127 cd07449, CRD_FZ3, Cysteine-rich Wnt-binding domain 0.003
>gnl|CDD|143549 cd07066, CRD_FZ, CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain Back     alignment and domain information
 Score = 56.0 bits (135), Expect = 9e-12
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 12 QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLL 71
          +C    L +CRG+ PY+ T  PN+ G  S    E  L  F  +  S C P  + FLCSL 
Sbjct: 1  KCEPIPLPLCRGL-PYNTTRFPNLLGHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLY 59

Query: 72 EPECQPNGQNILPP 85
           PEC P+G   +PP
Sbjct: 60 FPECTPDGDRPIPP 73


CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines. Length = 119

>gnl|CDD|201766 pfam01392, Fz, Fz domain Back     alignment and domain information
>gnl|CDD|214498 smart00063, FRI, Frizzled Back     alignment and domain information
>gnl|CDD|143557 cd07448, CRD_FZ4, Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor Back     alignment and domain information
>gnl|CDD|143563 cd07454, CRD_LIN_17, Cysteine-rich domain (CRD) of LIN_17 Back     alignment and domain information
>gnl|CDD|143569 cd07460, CRD_FZ5, Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor Back     alignment and domain information
>gnl|CDD|143565 cd07456, CRD_FZ5_like, Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5 Back     alignment and domain information
>gnl|CDD|143572 cd07463, CRD_FZ9, Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor Back     alignment and domain information
>gnl|CDD|143566 cd07457, CRD_FZ9_like, Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9 Back     alignment and domain information
>gnl|CDD|143558 cd07449, CRD_FZ3, Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 87
cd07463127 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of 100.0
cd07441126 CRD_SFRP3 Cysteine-rich domain of the secreted fri 100.0
cd07442127 CRD_SFRP4 Cysteine-rich domain of the secreted fri 100.0
cd07462127 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of 100.0
cd07460127 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of 100.0
cd07454124 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A 100.0
cd07461125 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of 100.0
cd07466125 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of 99.98
cd07457121 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD 99.98
cd07456120 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD 99.98
cd07465127 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of 99.98
cd07464127 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of 99.98
cd07888122 CRD_corin_2 One of two cysteine-rich domains of th 99.97
cd07458119 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD 99.97
cd07448126 CRD_FZ4 Cysteine-rich Wnt-binding domain of the fr 99.97
cd07449127 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of 99.97
cd07446128 CRD_SFRP2 Cysteine-rich domain of the secreted fri 99.97
cd07455123 CRD_Collagen_XVIII Cysteine-rich domain of the var 99.97
cd07450127 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of 99.97
cd07445130 CRD_corin_1 One of two cysteine-rich domains of th 99.97
cd07447128 CRD_Carboxypeptidase_Z Cysteine-rich domain of car 99.97
smart00063113 FRI Frizzled. Drosophila melanogaster frizzled med 99.97
cd07444127 CRD_SFRP5 Cysteine-rich domain of the secreted fri 99.97
cd07443124 CRD_SFRP1 Cysteine-rich domain of the secreted fri 99.96
cd07452141 CRD_sizzled Cysteine-rich domain of the sizzled pr 99.96
cd07453135 CRD_crescent Cysteine-rich domain of the crescent 99.96
cd07451132 CRD_SMO Cysteine-rich domain of the smoothened rec 99.95
KOG3577|consensus 556 99.92
cd07066119 CRD_FZ CRD_domain cysteine-rich domain, also known 99.91
PF01392116 Fz: Fz domain; InterPro: IPR020067 The frizzled (f 99.87
cd07459135 CRD_TK_ROR_like Cysteine-rich domain of tyrosine k 97.49
cd07467142 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinas 94.89
cd07468140 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinas 93.84
cd07469147 CRD_TK_ROR_related Cysteine-rich domain of protein 92.61
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor Back     alignment and domain information
Probab=100.00  E-value=4.8e-34  Score=189.22  Aligned_cols=78  Identities=29%  Similarity=0.546  Sum_probs=74.6

Q ss_pred             CCCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289           9 GQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS   87 (87)
Q Consensus         9 ~~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR   87 (87)
                      ++++||||++++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus         1 ~~~~CepI~~~~C~~-l~Yn~T~~PN~lgh~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCR   78 (127)
T cd07463           1 RAAKCQPVVIPMCRG-IGYNLTRMPNFLGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACR   78 (127)
T ss_pred             CCCccccCChhhhCC-CCcCcccCCcccCCcCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccccccCCCCCCcCCccH
Confidence            367999999999999 799999999999999999999999999999999999999999999999999987668899998



The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.

>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist Back     alignment and domain information
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist Back     alignment and domain information
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor Back     alignment and domain information
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor Back     alignment and domain information
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17 Back     alignment and domain information
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor Back     alignment and domain information
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor Back     alignment and domain information
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9 Back     alignment and domain information
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5 Back     alignment and domain information
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor Back     alignment and domain information
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor Back     alignment and domain information
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease Back     alignment and domain information
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1 Back     alignment and domain information
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor Back     alignment and domain information
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor Back     alignment and domain information
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity Back     alignment and domain information
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ) Back     alignment and domain information
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor Back     alignment and domain information
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease Back     alignment and domain information
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family Back     alignment and domain information
>smart00063 FRI Frizzled Back     alignment and domain information
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity Back     alignment and domain information
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity Back     alignment and domain information
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein Back     alignment and domain information
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein Back     alignment and domain information
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein Back     alignment and domain information
>KOG3577|consensus Back     alignment and domain information
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain Back     alignment and domain information
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids Back     alignment and domain information
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors Back     alignment and domain information
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1 Back     alignment and domain information
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2 Back     alignment and domain information
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query87
1ijy_A130 Frizzled homolog 8; WNT receptor, frizzled protein 1e-10
1ijx_A127 Secreted frizzled-related sequence protein 3; WNT 4e-10
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1 Length = 130 Back     alignment and structure
 Score = 52.4 bits (125), Expect = 1e-10
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 12 QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLL 71
           C    + +C+G+  Y+ T  PN     +       +  F  + E +CSP  K FLCS+ 
Sbjct: 9  ACQEITVPLCKGI-GYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMY 67

Query: 72 EPECQPNGQNILPP 85
           P C  + +  LPP
Sbjct: 68 TPICLEDYKKPLPP 81


>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1 Length = 127 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query87
1ijx_A127 Secreted frizzled-related sequence protein 3; WNT 99.97
1ijy_A130 Frizzled homolog 8; WNT receptor, frizzled protein 99.97
3hkl_A197 Muscle, skeletal receptor tyrosine protein kinase; 94.33
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1 Back     alignment and structure
Probab=99.97  E-value=1.3e-32  Score=181.00  Aligned_cols=77  Identities=25%  Similarity=0.520  Sum_probs=73.1

Q ss_pred             CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCC-CCCCCCC
Q psy1289          10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQ-NILPPFS   87 (87)
Q Consensus        10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~-~~i~PCR   87 (87)
                      +++|+||++++|+| ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|.+++. ++++|||
T Consensus         2 ~~~C~pi~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~~~~f~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~~~i~PCR   79 (127)
T 1ijx_A            2 SAACEPVRIPLCKS-LPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMYAPICTIDFQHEPIKPCK   79 (127)
T ss_dssp             -CCCEECCCGGGGG-SSCCEECSSCTTCCSSHHHHHHHHHTTHHHHTTTCCTTHHHHHHHHHSCBCBSSCSSSCCCBCH
T ss_pred             CCccccCChhHhCC-CCCCeeECCCcCCCcCHHHHHHHHHHHHHHHccCcCHHHHhhhhhccCCcccCCCCCcccCccH
Confidence            57999999999999 89999999999999999999999999999999999999999999999999998765 7899997



>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1 Back     alignment and structure
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor tyrosine kinase, frizzled CRD, ATP-binding, D bond, glycoprotein; HET: NAG; 2.10A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 87
d1ijya_122 a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus muscul 5e-10
d1ijxa_125 a.141.1.1 (A:) Secreted Frizzled-related protein 3 5e-09
>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: All alpha proteins
fold: Frizzled cysteine-rich domain
superfamily: Frizzled cysteine-rich domain
family: Frizzled cysteine-rich domain
domain: Frizzled 8 (FZ8)
species: Mouse (Mus musculus) [TaxId: 10090]
 Score = 49.7 bits (118), Expect = 5e-10
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 18 LKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQP 77
          + +C+G+  Y+ T  PN     +       +  F  + E +CSP  K FLCS+  P C  
Sbjct: 9  VPLCKGI-GYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLE 67

Query: 78 NGQNILPP 85
          + +  LPP
Sbjct: 68 DYKKPLPP 75


>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3 (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query87
d1ijya_122 Frizzled 8 (FZ8) {Mouse (Mus musculus) [TaxId: 100 99.95
d1ijxa_125 Secreted Frizzled-related protein 3 (SFRP-3;fzb) { 99.95
>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: Frizzled cysteine-rich domain
superfamily: Frizzled cysteine-rich domain
family: Frizzled cysteine-rich domain
domain: Frizzled 8 (FZ8)
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95  E-value=1.1e-29  Score=163.96  Aligned_cols=76  Identities=29%  Similarity=0.532  Sum_probs=73.0

Q ss_pred             CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289          11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS   87 (87)
Q Consensus        11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR   87 (87)
                      ..|+||++++|++ ||||.|+|||++||.+|+||..++..|.+|++++||+++++|+|++|+|+|.++++++++|||
T Consensus         2 ~~C~pi~~~~C~~-l~Yn~T~~PN~~~h~~~~e~~~~~~~~~~l~~~~C~~~l~~flCs~~~P~C~~~~~~~~~PCr   77 (122)
T d1ijya_           2 LACQEITVPLCKG-IGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCR   77 (122)
T ss_dssp             CCCEECCCGGGTT-SSCCEECSSCTTCCCSHHHHHHHHGGGHHHHHHTSCTTHHHHHHHHHSCBCCSSCCSCCCBCH
T ss_pred             CeeeecChhhhCC-CCCCceECcCcccCcCHHHHHHHHHHHhhhhccccCHhHHHHHhhhccCcccCCCCCccCccH
Confidence            4799999999999 899999999999999999999999999999999999999999999999999988778899997



>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3 (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure