Psyllid ID: psy12906

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE
cEEEccccccccccEEEcccHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccHHHHHcccccccHHHHHHHHccHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccEEEEEEcccc
cEEEEccccccHHHEEEHHHHHHHHHHHccccccEEEcccccccEccHHHHHHHHHHHHHHcccccccEEEHHHccccccHHHHHHHHHccEEEEccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHcHHHHHHHHHccccccEcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEEcccc
lviscdnasygctVAVKLDSysshltecehnpkrpvqceqgcgsvipmdelkylsnqceyhqhdshgtdlelsfctpyqslhtANTAIMGYEIVRFIGEVDEELICSICsgvfeeplqdhncvKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLaenmerddvARWSNSLSRARvtrwggmistPDVMLQAMIKRSlaesgcpghilDQLMhnshernwpqglsSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDnvhlpedmisapGLVMIFAHGIE
lviscdnasygcTVAVKLDSYSSHLTEcehnpkrpvqcEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMkvsnpgvrvlaenmerddvarwsnslsrarvtrwggmiSTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE
LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE
**ISCDNASYGCTVAVKLDSYSSHLTECEHN*KRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCVKELRSIV***************************LTVLQELMRAMKVSNPGVRVLAENM**DDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLM***********************QYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAH***
LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELI*******************************************************************************DDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE
LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE
LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGI*
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LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTVLQELMRAMKVSNPGVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query303 2.2.26 [Sep-21-2011]
Q7ZW16318 E3 ubiquitin-protein liga yes N/A 0.617 0.588 0.582 2e-62
Q5FWL3317 E3 ubiquitin-protein liga N/A N/A 0.610 0.583 0.578 6e-62
Q8BH75317 E3 ubiquitin-protein liga yes N/A 0.617 0.589 0.572 7e-62
Q5R7T5317 E3 ubiquitin-protein liga yes N/A 0.617 0.589 0.572 7e-62
Q9H4P4317 E3 ubiquitin-protein liga no N/A 0.617 0.589 0.572 7e-62
>sp|Q7ZW16|RNF41_DANRE E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1 Back     alignment and function desciption
 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 146/187 (78%)

Query: 117 LQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVR 176
           + +HNC+K LRS+V +QQ K+ ++E   +E + Q+ E KR + +L+  MRA++ +NP ++
Sbjct: 129 MPNHNCIKHLRSVVQQQQTKIADLEKTAAEHKHQLAEQKRDIQLLKAYMRAIRSANPNLQ 188

Query: 177 VLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMH 236
            L E++E +++  W NSL  ARVTRWGGMISTPD +LQA+IKRSL +SGCP  I++ L+ 
Sbjct: 189 NLEESIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPLSIVNDLIE 248

Query: 237 NSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVM 296
           N+HERNWPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ EDMI  PGLVM
Sbjct: 249 NAHERNWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDMILEPGLVM 308

Query: 297 IFAHGIE 303
           IFAHG+E
Sbjct: 309 IFAHGVE 315
Acts as E3 ubiquitin-protein ligase and regulates the degradation of target proteins.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2 SV=1 Back     alignment and function description
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2 SV=1 Back     alignment and function description
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
195442870315 GK24430 [Drosophila willistoni] gi|19416 0.782 0.752 0.508 2e-75
194873145315 GG15934 [Drosophila erecta] gi|195327897 0.782 0.752 0.508 4e-75
24664887315 early girl, isoform A [Drosophila melano 0.782 0.752 0.508 4e-75
125978799315 GA14285 [Drosophila pseudoobscura pseudo 0.782 0.752 0.504 8e-75
194749821315 GF24099 [Drosophila ananassae] gi|190624 0.782 0.752 0.501 2e-74
91078878315 PREDICTED: similar to conserved hypothet 0.633 0.609 0.671 1e-73
195495362315 GE22283 [Drosophila yakuba] gi|194181335 0.782 0.752 0.498 7e-73
383866131321 PREDICTED: E3 ubiquitin-protein ligase N 0.617 0.582 0.657 8e-73
328793734321 PREDICTED: e3 ubiquitin-protein ligase N 0.617 0.582 0.657 9e-73
328793732315 PREDICTED: e3 ubiquitin-protein ligase N 0.617 0.593 0.657 9e-73
>gi|195442870|ref|XP_002069169.1| GK24430 [Drosophila willistoni] gi|194165254|gb|EDW80155.1| GK24430 [Drosophila willistoni] Back     alignment and taxonomy information
 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/303 (50%), Positives = 186/303 (61%), Gaps = 66/303 (21%)

Query: 1   LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEY 60
           L I+CDNA YGCT  +KLD+Y+SHL EC HNPKRP  CE+GCG  IP DELK        
Sbjct: 79  LSITCDNAPYGCTAVLKLDAYNSHLEECIHNPKRPFPCEKGCGFDIPKDELK-------- 130

Query: 61  HQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDH 120
                H    EL      ++L    T  MG                              
Sbjct: 131 ----DHNCVREL------RTLIVKQTEKMG------------------------------ 150

Query: 121 NCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLAE 180
               EL+S +  QQ                + ELKR+L + ++ MRAM+VSNP +R +A+
Sbjct: 151 ----ELKSELTDQQ--------------LTINELKRELQLFKDFMRAMRVSNPAMRAIAD 192

Query: 181 NMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHE 240
            MERD+V RWS++L RARVTRWGGMISTPD  LQ MIKR+L+ESGCP HILD LM   HE
Sbjct: 193 QMERDEVIRWSSALPRARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDSLMEFCHE 252

Query: 241 RNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAH 300
           R WP+GL+SLETRQNNRR Y+NYVC+RIP KQAV+VL CDN+H+ ED++  PGLVMIFAH
Sbjct: 253 RRWPRGLASLETRQNNRRIYDNYVCRRIPGKQAVLVLSCDNLHMTEDVMIDPGLVMIFAH 312

Query: 301 GIE 303
           GIE
Sbjct: 313 GIE 315

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|194873145|ref|XP_001973148.1| GG15934 [Drosophila erecta] gi|195327897|ref|XP_002030653.1| GM25563 [Drosophila sechellia] gi|195477914|ref|XP_002086432.1| GE22867 [Drosophila yakuba] gi|190654931|gb|EDV52174.1| GG15934 [Drosophila erecta] gi|194119596|gb|EDW41639.1| GM25563 [Drosophila sechellia] gi|194186222|gb|EDW99833.1| GE22867 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|24664887|ref|NP_648816.1| early girl, isoform A [Drosophila melanogaster] gi|442632623|ref|NP_001261904.1| early girl, isoform B [Drosophila melanogaster] gi|7294214|gb|AAF49566.1| early girl, isoform A [Drosophila melanogaster] gi|15292173|gb|AAK93355.1| LD41235p [Drosophila melanogaster] gi|220946208|gb|ACL85647.1| CG17033-PA [synthetic construct] gi|220955906|gb|ACL90496.1| CG17033-PA [synthetic construct] gi|440215850|gb|AGB94597.1| early girl, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|125978799|ref|XP_001353432.1| GA14285 [Drosophila pseudoobscura pseudoobscura] gi|195160735|ref|XP_002021229.1| GL25216 [Drosophila persimilis] gi|54642192|gb|EAL30941.1| GA14285 [Drosophila pseudoobscura pseudoobscura] gi|194118342|gb|EDW40385.1| GL25216 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|194749821|ref|XP_001957335.1| GF24099 [Drosophila ananassae] gi|190624617|gb|EDV40141.1| GF24099 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|91078878|ref|XP_972869.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] gi|270003710|gb|EFA00158.1| hypothetical protein TcasGA2_TC002979 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195495362|ref|XP_002095234.1| GE22283 [Drosophila yakuba] gi|194181335|gb|EDW94946.1| GE22283 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|383866131|ref|XP_003708525.1| PREDICTED: E3 ubiquitin-protein ligase NRDP1-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|328793734|ref|XP_395055.3| PREDICTED: e3 ubiquitin-protein ligase NRDP1 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|328793732|ref|XP_003251921.1| PREDICTED: e3 ubiquitin-protein ligase NRDP1 [Apis mellifera] gi|340716001|ref|XP_003396493.1| PREDICTED: e3 ubiquitin-protein ligase NRDP1-like [Bombus terrestris] gi|350408644|ref|XP_003488469.1| PREDICTED: E3 ubiquitin-protein ligase NRDP1-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query303
FB|FBgn0036546315 elgi "early girl" [Drosophila 0.627 0.603 0.636 7.2e-86
UNIPROTKB|G3V930317 Rnf41 "Protein Rnf41" [Rattus 0.627 0.599 0.563 7.5e-78
RGD|1309557297 Rnf41 "ring finger protein 41" 0.627 0.639 0.563 7.5e-78
ZFIN|ZDB-GENE-040426-2920318 rnf41 "ring finger protein 41" 0.627 0.597 0.573 9.5e-78
MGI|MGI:1914838317 Rnf41 "ring finger protein 41" 0.627 0.599 0.563 1.2e-77
UNIPROTKB|E2QVC5317 RNF41 "Uncharacterized protein 0.627 0.599 0.563 1.5e-77
UNIPROTKB|Q9H4P4317 RNF41 "E3 ubiquitin-protein li 0.627 0.599 0.563 1.5e-77
UNIPROTKB|Q5R7T5317 RNF41 "E3 ubiquitin-protein li 0.627 0.599 0.563 1.5e-77
UNIPROTKB|Q5FWL3317 rnf41 "E3 ubiquitin-protein li 0.627 0.599 0.563 1.5e-77
UNIPROTKB|I3LFT6317 LOC100157936 "Uncharacterized 0.627 0.599 0.563 2e-77
FB|FBgn0036546 elgi "early girl" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 672 (241.6 bits), Expect = 7.2e-86, Sum P(2) = 7.2e-86
 Identities = 121/190 (63%), Positives = 158/190 (83%)

Query:   114 EEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNP 173
             ++ L+DHNCV+ELR+++ KQ +KM  +++E+++Q+  + ELKR+L + ++ MRAM+VSNP
Sbjct:   126 KDELKDHNCVRELRTLIVKQTEKMGELKSELTDQQLTINELKRELQLFKDFMRAMRVSNP 185

Query:   174 GVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQ 233
              +R +A+ MERD+V RWS++L RARVTRWGGMISTPD  LQ MIKR+L+ESGCP HILD 
Sbjct:   186 AMRAIADQMERDEVIRWSSTLPRARVTRWGGMISTPDDALQLMIKRALSESGCPPHILDS 245

Query:   234 LMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPG 293
             LM   HER WP+GLSSLETRQ NRR Y+NYVC+RIP KQAV+VL CDN+H+ ED++  PG
Sbjct:   246 LMEFCHERRWPRGLSSLETRQTNRRIYDNYVCRRIPGKQAVLVLSCDNLHMTEDVMIDPG 305

Query:   294 LVMIFAHGIE 303
             LVMIFAHGIE
Sbjct:   306 LVMIFAHGIE 315
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0031386 "protein tag" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0051445 "regulation of meiotic cell cycle" evidence=IMP
UNIPROTKB|G3V930 Rnf41 "Protein Rnf41" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1309557 Rnf41 "ring finger protein 41" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2920 rnf41 "ring finger protein 41" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1914838 Rnf41 "ring finger protein 41" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QVC5 RNF41 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H4P4 RNF41 "E3 ubiquitin-protein ligase NRDP1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R7T5 RNF41 "E3 ubiquitin-protein ligase NRDP1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q5FWL3 rnf41 "E3 ubiquitin-protein ligase NRDP1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFT6 LOC100157936 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R7T5RNF41_PONAB6, ., 3, ., 2, ., -0.57210.61710.5899yesN/A
Q7ZW16RNF41_DANRE6, ., 3, ., 2, ., -0.58280.61710.5880yesN/A
Q8BH75RNF41_MOUSE6, ., 3, ., 2, ., -0.57210.61710.5899yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
pfam08941179 pfam08941, USP8_interact, USP8 interacting 4e-87
>gnl|CDD|149875 pfam08941, USP8_interact, USP8 interacting Back     alignment and domain information 
 Score =  258 bits (660), Expect = 4e-87
 Identities = 103/179 (57%), Positives = 134/179 (74%)

Query: 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLAENMER 184
           ELRSIV  Q  ++  ++    +   Q+ E KR+L +L+  +RA++ +NP +R + E +ER
Sbjct: 1   ELRSIVQDQATEIAELKHTQVDHEIQINEQKRELELLKYYIRALRSTNPIMRNIGEQLER 60

Query: 185 DDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWP 244
           ++V  W N L  ARVTRWGGMISTPD +LQ MI+RSL ESGCP HIL++L+ N HER WP
Sbjct: 61  NEVLEWCNGLPPARVTRWGGMISTPDNVLQLMIRRSLRESGCPMHILNELVENCHERRWP 120

Query: 245 QGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE 303
            GL++LETRQ NRRQYE YVC+RIP KQAVVVL C+N H+PE++   PGLVMIFAHG+E
Sbjct: 121 AGLATLETRQANRRQYEQYVCRRIPGKQAVVVLGCENTHMPENLRPEPGLVMIFAHGVE 179

This domain interacts with the UBP deubiquitinating enzyme USP8. Length = 179

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 303
PF08941179 USP8_interact: USP8 interacting; InterPro: IPR0150 100.0
KOG0297|consensus391 99.92
PLN03086567 PRLI-interacting factor K; Provisional 98.73
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 98.38
PF0217660 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 98.11
PF03145198 Sina: Seven in absentia protein family; InterPro: 97.74
KOG0297|consensus391 97.66
PLN03086567 PRLI-interacting factor K; Provisional 97.47
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 96.73
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 96.26
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 94.76
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 94.6
KOG3002|consensus299 92.88
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 92.27
PF03145198 Sina: Seven in absentia protein family; InterPro: 90.67
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 88.07
PF15290305 Syntaphilin: Golgi-localised syntaxin-1-binding cl 84.57
PF1391325 zf-C2HC_2: zinc-finger of a C2HC-type 83.16
KOG0287|consensus442 82.78
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8 Back     alignment and domain information 
Probab=100.00  E-value=2.9e-86  Score=579.92  Aligned_cols=179  Identities=63%  Similarity=1.064  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhhchHHHHHHHhhcccccccccCc
Q psy12906        125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLAENMERDDVARWSNSLSRARVTRWGG  204 (303)
Q Consensus       125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~~~~~~~~~~~~~~~I~~ws~kL~~ar~~~~g~  204 (303)
                      +||+.|++++.++.+|++++.+++.+++++||+|++||++|++++++||.++++++++|++++++|+++|+.||||||||
T Consensus         1 ELR~lVq~Qq~~i~ELk~~~aeq~~ql~eqkREl~lLk~yirAlR~sNP~~rni~dq~e~~evm~W~~sL~~ArVtrWGg   80 (179)
T PF08941_consen    1 ELRELVQQQQTKIAELKKEQAEQQQQLSEQKRELELLKEYIRALRSSNPVMRNIGDQLERDEVMQWVNSLPPARVTRWGG   80 (179)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHHHSEBEEES-GGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCChHHHHhHHHHHHHHHhCChhhcccccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchHHHHHHHHHHHHhcCCchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCceEEEEecCCCCC
Q psy12906        205 MISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHL  284 (303)
Q Consensus       205 ~iStP~~~~~~~~~~~l~~s~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~~~~~~~~~n~h~  284 (303)
                      ||||||++||++||++|++||||+||+|+|||||||||||+|||||||||+|||+|+||||||||||||||||||||+||
T Consensus        81 mISTPD~~Lq~~ir~~L~~sgCP~hi~~~l~e~~hE~rWP~gL~tLetRq~N~~~y~~yV~r~ipGKqaVvvl~cdN~HM  160 (179)
T PF08941_consen   81 MISTPDSVLQAMIRRSLSESGCPMHILNELMENCHERRWPPGLSTLETRQMNRRRYEQYVTRRIPGKQAVVVLACDNTHM  160 (179)
T ss_dssp             EESS--HHHHHHHHHHHHHTT--CCCHHHHHHTTSGGGS-TTTSSHHHHHHCCCHHCCS-EEE-TTSSEEEEEGGG-TTS
T ss_pred             cccCccHHHHHHHHHHHHhcCCCHHHHHHHHHHhhhccCcchhhHHHHHHHHHHHHHHHHHhhCCCCceEEEEecccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCcEEEEeecCCC
Q psy12906        285 PEDMISAPGLVMIFAHGIE  303 (303)
Q Consensus       285 ~~~~~~~~g~~~if~~g~~  303 (303)
                      ||||+++||||||||||||
T Consensus       161 ~e~m~~~pGlvmIFahGve  179 (179)
T PF08941_consen  161 PEDMRPEPGLVMIFAHGVE  179 (179)
T ss_dssp             -CCC--SSEEEEEESS-EE
T ss_pred             CcccccCCCEEEEeecCCC
Confidence            9999999999999999997

; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
>KOG0297|consensus Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A Back     alignment and domain information
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila Back     alignment and domain information
>KOG0297|consensus Back     alignment and domain information
>PLN03086 PRLI-interacting factor K; Provisional Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>KOG3002|consensus Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp Back     alignment and domain information
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type Back     alignment and domain information
>KOG0287|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
2gwf_B134 Structure Of A Usp8-Nrdp1 Complex Length = 134 6e-48
2fzp_A144 Crystal Structure Of The Usp8 Interaction Domain Of 8e-48
2ogb_A126 Crystal Structure Of The C-Terminal Domain Of Mouse 3e-45
>pdb|2GWF|B Chain B, Structure Of A Usp8-Nrdp1 Complex Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  187 bits (475), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 102/125 (81%)
Query: 179 AENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNS 238
              +E +++  W NSL  ARVTRWGGMISTPD +LQA+IKRSL ESGCP  I+++L+ N+
Sbjct: 8   GSTIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENA 67
Query: 239 HERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIF 298
           HER+WPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ +DM+  PGLVMIF
Sbjct: 68  HERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIF 127
Query: 299 AHGIE 303
           AHG+E
Sbjct: 128 AHGVE 132
>pdb|2FZP|A Chain A, Crystal Structure Of The Usp8 Interaction Domain Of Human Nrdp1 Length = 144 Back     alignment and structure
>pdb|2OGB|A Chain A, Crystal Structure Of The C-Terminal Domain Of Mouse Nrdp1 Length = 126 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query303
2fzp_A144 NRDP1, ring finger protein 41 isoform 1; E3 ligase 3e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 9e-04
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, STRU genomics consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A Length = 144 Back     alignment and structure
 Score =  203 bits (517), Expect = 3e-66
 Identities = 82/124 (66%), Positives = 102/124 (82%)

Query: 180 ENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSH 239
             +E +++  W NSL  ARVTRWGGMISTPD +LQA+IKRSL ESGCP  I+++L+ N+H
Sbjct: 19  STIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 78

Query: 240 ERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFA 299
           ER+WPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ +DM+  PGLVMIFA
Sbjct: 79  ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 138

Query: 300 HGIE 303
           HG+E
Sbjct: 139 HGVE 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
2fzp_A144 NRDP1, ring finger protein 41 isoform 1; E3 ligase 100.0
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 99.16
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 99.07
2yuc_A76 TNF receptor-associated factor 4; ZF-TRAF, cystein 98.36
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 97.96
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 97.55
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 97.4
2d9k_A75 FLN29 gene product; zinc finger, ZF-TRAF, structur 97.39
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.35
2yre_A100 F-box only protein 30; zinc binding, E3 ubiquitin 97.22
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 96.8
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 95.24
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 92.94
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 92.71
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 92.13
2a25_A193 Ubiquitin ligase SIAH1; protein-peptide complex, l 87.58
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 85.76
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 84.84
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 84.19
2eod_A66 TNF receptor-associated factor 4; zinc binding, NF 82.55
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 82.1
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 81.56
2vy4_A37 U11/U12 small nuclear ribonucleoprotein 48 kDa pro 81.1
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, STRU genomics consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A Back     alignment and structure
Probab=100.00  E-value=4.5e-73  Score=475.01  Aligned_cols=129  Identities=64%  Similarity=1.108  Sum_probs=126.9

Q ss_pred             hhhhhhhhchHHHHHHHhhcccccccccCccccCchHHHHHHHHHHHHhcCCchHHHHHHHhhccccCCCcccccHHHHH
Q psy12906        175 VRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQ  254 (303)
Q Consensus       175 ~~~~~~~~~~~~I~~ws~kL~~ar~~~~g~~iStP~~~~~~~~~~~l~~s~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~  254 (303)
                      +-++++++++++|++|+++|+.|+|++|||||||||++||+|||++|++||||+||+|+|||||||||||+||+||||||
T Consensus        14 ~~~igdqler~~lm~W~~~Lp~ArVt~WG~mISTPD~~lq~mir~~L~~sGCP~hiln~l~e~cHE~rWP~GLstLetRq   93 (144)
T 2fzp_A           14 LVPRGSTIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQ   93 (144)
T ss_dssp             CSCTTSHHHHHHHHHHHHHSEEEEECCGGGEESSCCHHHHHHHHHHHHHTTCCHHHHHHHHHTTSGGGSCTTTSSHHHHH
T ss_pred             hhhHHHHHhHHHHHHHHhcCchhhcccccccccCccHHHHHHHHHHHHhcCCCHHHHHHHHHHhhhccCcchhhHHHHHH
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhhhhcCCCCceEEEEecCCCCCCCCCccCCcEEEEeecCCC
Q psy12906        255 NNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE  303 (303)
Q Consensus       255 ~n~~~~~~~v~~~~~~k~~~~~~~~~n~h~~~~~~~~~g~~~if~~g~~  303 (303)
                      +|||+|+||||||||||||||||+|||+||||||+++||||||||||||
T Consensus        94 ~Nr~~~~~yV~r~iPGKq~Vvvl~cDN~HMpenm~~~~GlvMIFa~GVe  142 (144)
T 2fzp_A           94 MNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE  142 (144)
T ss_dssp             HTTTGGGGCCEEECTTSSEEEEEGGGCTTSCTTTCCSSEEEEEESSCEE
T ss_pred             HHHHHHHHHHHhhCCCCceEEEEecccCcCCcccccCCCEEEEEecccc
Confidence            9999999999999999999999999999999999999999999999996
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 303
d2fzpa1125 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase 6e-71
d1k2fa_190 b.8.1.2 (A:) SIAH, seven in absentia homolog {Mous 0.002
>d2fzpa1 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase NRDP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: NRDP1 C-terminal domain-like
superfamily: NRDP1 C-terminal domain-like
family: USP8 interacting domain
domain: E3 ubiquitin-protein ligase NRDP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  213 bits (544), Expect = 6e-71
 Identities = 82/122 (67%), Positives = 102/122 (83%)

Query: 182 MERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHER 241
           +E +++  W NSL  ARVTRWGGMISTPD +LQA+IKRSL ESGCP  I+++L+ N+HER
Sbjct: 2   IEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHER 61

Query: 242 NWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHG 301
           +WPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ +DM+  PGLVMIFAHG
Sbjct: 62  SWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHG 121

Query: 302 IE 303
           +E
Sbjct: 122 VE 123
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query303
d2fzpa1125 E3 ubiquitin-protein ligase NRDP1 {Human (Homo sap 100.0
d1k2fa_190 SIAH, seven in absentia homolog {Mouse (Mus muscul 97.89
d1k2fa_190 SIAH, seven in absentia homolog {Mouse (Mus muscul 90.76
d1wjva135 Cell growth regulating nucleolar protein LyaR {Mou 80.75
>d2fzpa1 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase NRDP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: NRDP1 C-terminal domain-like
superfamily: NRDP1 C-terminal domain-like
family: USP8 interacting domain
domain: E3 ubiquitin-protein ligase NRDP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-73  Score=462.29  Aligned_cols=122  Identities=67%  Similarity=1.179  Sum_probs=120.9

Q ss_pred             hchHHHHHHHhhcccccccccCccccCchHHHHHHHHHHHHhcCCchHHHHHHHhhccccCCCcccccHHHHHhhHHHHh
Q psy12906        182 MERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYE  261 (303)
Q Consensus       182 ~~~~~I~~ws~kL~~ar~~~~g~~iStP~~~~~~~~~~~l~~s~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~  261 (303)
                      +|++|+++|+++|+.|+|++|||||||||++||++||++|++||||+||+|+|||||||||||+|||||||||+|||+|+
T Consensus         2 ~e~~evm~W~~~Lp~A~Vt~WG~mISTPD~~l~~~ir~~L~~sgCP~hiln~l~e~cHE~rWP~GL~tLetRq~N~~~~~   81 (125)
T d2fzpa1           2 IEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYE   81 (125)
T ss_dssp             HHHHHHHHHHHHSEEEEECCGGGEESSCCHHHHHHHHHHHHHTTCCHHHHHHHHHTTSGGGSCTTTSSHHHHHHTTTGGG
T ss_pred             ccHHHHHHHHccCCcceeccccccccCccHHHHHHHHHHhhhcCCChHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCceEEEEecCCCCCCCCCccCCcEEEEeecCCC
Q psy12906        262 NYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE  303 (303)
Q Consensus       262 ~~v~~~~~~k~~~~~~~~~n~h~~~~~~~~~g~~~if~~g~~  303 (303)
                      |||||+||||||||||||||+||||||+++||||||||||||
T Consensus        82 ~yV~r~iPGKq~Vvvl~cdN~HM~e~l~~~~GlvMIF~~Gve  123 (125)
T d2fzpa1          82 NYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE  123 (125)
T ss_dssp             GCCEEECTTSSEEEEEGGGCTTSCTTTCCSSEEEEEESSCEE
T ss_pred             HHHHhhCCCCceEEEEecccccCCcccccCCCEEEEEecccc
Confidence            999999999999999999999999999999999999999996
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure