Psyllid ID: psy12912

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MANLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQFN
Secondary Structure (PSIPRED)
cccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHcccccEEcccccccHHHHHHHHHHHcHHHHccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHccHHHcc
Coil and Loop (DISEMBL)
manleevklftntkerekfdnQADLYAVINTLQNLEKAyirdcvtpkeYTAACSKLLVQYKAAFKQvqgeeyptvEHFVKKYRLDCPSALEriredrpitikddkgntskCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNrlsilpsgfegkekvSGWLTTLESMSASDELNETQFN
Flexible Loop (DISEMBL)
MANLEEVKLftntkerekfdnqADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLdcpsaleriredrpitikddkgntskcIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSIlpsgfegkekvSGWLTTlesmsasdelnetqfn
Low Complexity Region (SEG)
MANLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQFN
Disordered region (IsUnstruct)
******************FDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGF*****VSGWL******************
Disordered Region (DISOPRED)
***LEEV*LFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRL******FEGKEKVSGWLTTLESMSASDE*******
Disordered Region (DISEMBL)
MANLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSA**********
Disordered Region (DISPRO)
**NLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMS***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9V359	210	Vacuolar protein sorting-	yes	N/A	0.967	0.852	0.743	1e-76
B5DEN9	228	Vacuolar protein sorting-	yes	N/A	0.967	0.785	0.698	2e-74
Q3T178	221	Vacuolar protein sorting-	yes	N/A	0.967	0.809	0.698	2e-74
Q9D1C8	221	Vacuolar protein sorting-	yes	N/A	0.967	0.809	0.698	3e-74
Q9UK41	221	Vacuolar protein sorting-	yes	N/A	0.967	0.809	0.692	5e-74
A8XWB7	209	Vacuolar protein sorting-	N/A	N/A	0.951	0.842	0.483	1e-42
Q9NA26	210	Vacuolar protein sorting-	yes	N/A	0.962	0.847	0.491	2e-42
Q54NF1	288	Vacuolar protein sorting-	yes	N/A	0.972	0.625	0.425	2e-37
Q9S9T7	210	Vacuolar protein sorting-	yes	N/A	0.956	0.842	0.416	5e-37
O65421	209	Vacuolar protein sorting-	no	N/A	0.956	0.846	0.410	4e-33

>sp|Q9V359|VPS28_DROME Vacuolar protein sorting-associated protein 28 homolog OS=Drosophila melanogaster GN=Vps28 PE=1 SV=1

 Score =  285 bits (729), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 133/179 (74%), Positives = 153/179 (85%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKLF N +EREK+DN ADLYA+INT+Q LEKAYIRDC+TP+EYTAACSK LVQYK AF
Sbjct: 10  EEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAF 69

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +E+P+VE FVKK+RLDCP+ALERIREDRPITI+DDKGNTSKCIA+IVSLFIT MD
Sbjct: 70  KQVQCDEFPSVETFVKKFRLDCPAALERIREDRPITIRDDKGNTSKCIAEIVSLFITIMD 129

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL I  MD LQPD++DL D MNRLS++P  F+ K KV  WL +L  M ASDEL+E Q
Sbjct: 130 KLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQ 188

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.
Drosophila melanogaster (taxid: 7227)

>sp|B5DEN9|VPS28_RAT Vacuolar protein sorting-associated protein 28 homolog OS=Rattus norvegicus GN=Vps28 PE=2 SV=1

 Score =  278 bits (710), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct: 29  EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 88

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 89  RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 148

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct: 149 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 207

Component of the endosomal sorting complex required for transport-I (ESCRT-I) complex, a regulator of vesicular trafficking process (By similarity). The ESCRT-I complex participates in the sorting of membrane proteins into vesicles that bud into late endosomal compartments called multivesicular bodies, and is also involved in the budding of many viruses.

Rattus norvegicus (taxid: 10116)

>sp|Q3T178|VPS28_BOVIN Vacuolar protein sorting-associated protein 28 homolog OS=Bos taurus GN=VPS28 PE=2 SV=1

 Score =  277 bits (709), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct: 22  EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 81

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 82  RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct: 142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Bos taurus (taxid: 9913)

>sp|Q9D1C8|VPS28_MOUSE Vacuolar protein sorting-associated protein 28 homolog OS=Mus musculus GN=Vps28 PE=2 SV=1

 Score =  277 bits (709), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct: 22  EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 81

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 82  RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct: 142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Mus musculus (taxid: 10090)

>sp|Q9UK41|VPS28_HUMAN Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1

 Score =  276 bits (706), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 124/179 (69%), Positives = 157/179 (87%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCV+P EYTAACS+LLVQYKAAF
Sbjct: 22  EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAF 81

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct: 82  RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct: 142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Homo sapiens (taxid: 9606)

>sp|A8XWB7|VPS28_CAEBR Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis briggsae GN=vps-28 PE=3 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 118/178 (66%), Gaps = 2/178 (1%)

Query: 4   LEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAA 63
           + EV+LF N  ERE+ +N ++L+AV+N L++LEK + RD VT  EY   C KL+ QYK  
Sbjct: 8   MREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVTADEYKTECFKLIDQYKVT 67

Query: 64  FKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTM 123
            + V G    ++E F KKYRL CP+A+ERIRE RPIT+KDD+GN  K IA IV  FIT +
Sbjct: 68  MRLVHGA--TSIEEFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASIVEQFITFL 125

Query: 124 DKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNE 181
           D LRL+ +A+D+L P L DL + +N  S +P       KV  W   L SM+A+DE+++
Sbjct: 126 DSLRLNTRAVDDLYPVLDDLYNAINSTSRVPIDANVTTKVKKWHDRLSSMAATDEISD 183

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9NA26|VPS28_CAEEL Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis elegans GN=vps-28 PE=1 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 121/181 (66%), Gaps = 3/181 (1%)

Query: 2   ANL-EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQY 60
           ANL  EV+LF N  ERE+ +N ++L+AV+N L++LEK + RD V+  EY + C KL+ QY
Sbjct: 6   ANLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQY 65

Query: 61  KAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFI 120
           K   + V G    ++E F KKYRL CP+A+ERIRE RPIT+KDD+GN  K IA IV  FI
Sbjct: 66  KVTMRLVHGA--TSIEDFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASIVEQFI 123

Query: 121 TTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELN 180
           T +D LRL+ +A+D+L P L DL + +N  S +P       KV  W   L SM+ASDE++
Sbjct: 124 TFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEIS 183

Query: 181 E 181
           +
Sbjct: 184 D 184

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54NF1|VPS28_DICDI Vacuolar protein sorting-associated protein 28 OS=Dictyostelium discoideum GN=vps28 PE=3 SV=1

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 126/188 (67%), Gaps = 8/188 (4%)

Query: 3   NLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKA 62
           N++EVKLF N  ERE ++N A+LY++I   ++LEKAYIRD V+PK+YT ACSKL+ Q+K+
Sbjct: 81  NIKEVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKS 140

Query: 63  AFKQVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKDDKGNTS------KCIADI 115
           + + +  ++   V  F+K Y L+C +A +R + +  P T++ +   +S      K +A+ 
Sbjct: 141 S-QTLLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEA 199

Query: 116 VSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSA 175
           V LFITTMD +RL + ++D + P L DLM+++N+   L   FEGKEK+  W++ L  M A
Sbjct: 200 VQLFITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKA 259

Query: 176 SDELNETQ 183
           +DEL++ Q
Sbjct: 260 TDELDDDQ 267

Component of the ESCRT-I complex, a regulator of vesicular trafficking process.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9S9T7|VP282_ARATH Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/185 (41%), Positives = 115/185 (62%), Gaps = 8/185 (4%)

Query: 6   EVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK 65
           EVKL+ + +ERE ++N A+L+A+I   + LEKAYIRD + P EY + C KL+V +K    
Sbjct: 3   EVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKT-LS 61

Query: 66  QVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKD------DKGNTSKCIADIVSL 118
               +  P +E F   Y++DCP+AL R +    P T++          N++  +A+ V  
Sbjct: 62  ATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121

Query: 119 FITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDE 178
           FIT+MD L+L++ A+D++ P L DL  ++N+LSILP  FEGK K+  WL+ L  M A+DE
Sbjct: 122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 181

Query: 179 LNETQ 183
           L E Q
Sbjct: 182 LTEQQ 186

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex.

Arabidopsis thaliana (taxid: 3702)

>sp|O65421|VP281_ARATH Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana GN=VPS28-1 PE=1 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/185 (41%), Positives = 116/185 (62%), Gaps = 8/185 (4%)

Query: 6   EVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK 65
           EVKL+ + +ERE ++N A+LYA+I   + LEKAYIRD ++P EY   C KL+V +K    
Sbjct: 2   EVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSA 61

Query: 66  QVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKD------DKGNTSKCIADIVSL 118
            ++ +  P +E F + Y++DC +A+ R +    P T++          +++  +A+ V  
Sbjct: 62  SLK-DMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQN 120

Query: 119 FITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDE 178
           FIT+MD L+L++ A+D++ P L DL  ++N+LSILP  FEGK K+  WL  L  M ASDE
Sbjct: 121 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGASDE 180

Query: 179 LNETQ 183
           L E Q
Sbjct: 181 LTEQQ 185

Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). Mediates the association to the ESCRT-0 complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
350535829	215	uncharacterized protein LOC100169088 [Ac	0.972	0.837	0.822	2e-85
322788724	291	hypothetical protein SINV_12439 [Solenop	0.967	0.615	0.815	5e-84
332026858	212	Vacuolar protein sorting-associated prot	0.967	0.844	0.815	1e-83
307184746	212	Vacuolar protein sorting-associated prot	0.967	0.844	0.810	2e-83
383861482	212	PREDICTED: vacuolar protein sorting-asso	0.967	0.844	0.810	3e-83
340713383	213	PREDICTED: vacuolar protein sorting-asso	0.967	0.840	0.804	7e-83
350409024	213	PREDICTED: vacuolar protein sorting-asso	0.967	0.840	0.804	9e-83
157128280	210	hypothetical protein AaeL_AAEL002324 [Ae	0.972	0.857	0.794	1e-82
307201200	212	Vacuolar protein sorting-associated prot	0.967	0.844	0.798	2e-82
91087767	214	PREDICTED: similar to Vacuolar protein s	0.972	0.841	0.8	3e-82

>gi|350535829|ref|NP_001233024.1| uncharacterized protein LOC100169088 [Acyrthosiphon pisum] gi|239792091|dbj|BAH72426.1| ACYPI009739 [Acyrthosiphon pisum]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 170/180 (94%)

Query: 4   LEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAA 63
           LEEV+LF N +EREK+DN AD YA++NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQ KA+
Sbjct: 13  LEEVRLFRNAREREKYDNMADFYALVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQCKAS 72

Query: 64  FKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTM 123
           FKQ+QG+++P+VE FVKKY+LDCP+A+ERI+EDRPITIKDDKGNTSKCIADIVSLFIT M
Sbjct: 73  FKQIQGDDFPSVESFVKKYKLDCPAAIERIKEDRPITIKDDKGNTSKCIADIVSLFITIM 132

Query: 124 DKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           DKLRLDIKAMDELQPDLRDLMDTMNRLS+LP+ FEGK+KVS WL++L SM+ASDELNETQ
Sbjct: 133 DKLRLDIKAMDELQPDLRDLMDTMNRLSMLPADFEGKQKVSDWLSSLSSMNASDELNETQ 192

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788724|gb|EFZ14317.1| hypothetical protein SINV_12439 [Solenopsis invicta]

 Score =  315 bits (807), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 167/179 (93%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK DNQADLYAV+NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQY+AAF
Sbjct: 91  EEVKLYKNAREREKHDNQADLYAVVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQYRAAF 150

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +++PT++ F + +RLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 151 KQVQSDQFPTIDSFTRAFRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITLMD 210

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+IKAMD+L PDLRDLMDTMNRLSILPS F+GKEKVS WL TL++MSASDEL++TQ
Sbjct: 211 KLRLEIKAMDQLHPDLRDLMDTMNRLSILPSDFDGKEKVSEWLQTLDNMSASDELSDTQ 269

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026858|gb|EGI66961.1| Vacuolar protein sorting-associated protein 28-like protein [Acromyrmex echinatior]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 167/179 (93%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK DNQADLYAV+NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQY+AAF
Sbjct: 12  EEVKLYKNAREREKHDNQADLYAVVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQYRAAF 71

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +++PT++ F + +RLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 72  KQVQSDQFPTIDSFTRAFRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITLMD 131

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+IKAMD+L PDLRDLMDTMNRLSILPS F+GKEKVS WL TL++MSASDEL++TQ
Sbjct: 132 KLRLEIKAMDQLHPDLRDLMDTMNRLSILPSDFDGKEKVSEWLQTLDNMSASDELSDTQ 190

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184746|gb|EFN71068.1| Vacuolar protein sorting-associated protein 28-like protein [Camponotus floridanus]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 145/179 (81%), Positives = 167/179 (93%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK DNQADLYAV+NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQY+AAF
Sbjct: 12  EEVKLYKNAREREKHDNQADLYAVVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQYRAAF 71

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +++PT++ F + +RLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 72  KQVQSDQFPTIDSFTRAFRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITLMD 131

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+IKAMD+L PDLRDLMDTMNRLSILPS F+GKEKV+ WL TL++MSASDEL++TQ
Sbjct: 132 KLRLEIKAMDQLHPDLRDLMDTMNRLSILPSDFDGKEKVAEWLQTLDNMSASDELSDTQ 190

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861482|ref|XP_003706215.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog [Megachile rotundata]

 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 145/179 (81%), Positives = 166/179 (92%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK DNQADLYAV+NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQY+AAF
Sbjct: 12  EEVKLYKNAREREKHDNQADLYAVVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQYRAAF 71

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +++PT++ F + +RLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 72  KQVQSDQFPTIDAFARAFRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITLMD 131

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+IKAMD+L PDLRDLMDTMNRLSILPS F+GKEKV+ WL TL +MSASDEL++TQ
Sbjct: 132 KLRLEIKAMDQLHPDLRDLMDTMNRLSILPSDFDGKEKVAEWLQTLNNMSASDELSDTQ 190

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713383|ref|XP_003395223.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog [Bombus terrestris]

 Score =  311 bits (797), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 166/179 (92%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK DNQADLYAV+NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQY+AAF
Sbjct: 12  EEVKLYKNAREREKHDNQADLYAVVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQYRAAF 71

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +++PT++ F + +RLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 72  KQVQSDQFPTIDAFARAFRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITLMD 131

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+IKAMD+L PDLRDL+DTMNRLSILPS F+GKEKV+ WL TL +MSASDEL++TQ
Sbjct: 132 KLRLEIKAMDQLHPDLRDLVDTMNRLSILPSDFDGKEKVAEWLQTLSNMSASDELSDTQ 190

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409024|ref|XP_003488588.1| PREDICTED: vacuolar protein sorting-associated protein 28 homolog [Bombus impatiens]

 Score =  311 bits (796), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 166/179 (92%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK DNQADLYAV+NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQY+AAF
Sbjct: 12  EEVKLYKNAREREKHDNQADLYAVVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQYRAAF 71

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +++PT++ F + +RLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 72  KQVQSDQFPTIDAFARAFRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITLMD 131

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+IKAMD+L PDLRDL+DTMNRLSILPS F+GKEKV+ WL TL +MSASDEL++TQ
Sbjct: 132 KLRLEIKAMDQLHPDLRDLVDTMNRLSILPSDFDGKEKVAEWLQTLSNMSASDELSDTQ 190

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128280|ref|XP_001661380.1| hypothetical protein AaeL_AAEL002324 [Aedes aegypti] gi|157136889|ref|XP_001663849.1| hypothetical protein AaeL_AAEL013658 [Aedes aegypti] gi|108869845|gb|EAT34070.1| AAEL013658-PA [Aedes aegypti] gi|108882267|gb|EAT46492.1| AAEL002324-PA [Aedes aegypti]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 166/180 (92%)

Query: 4   LEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAA 63
            EEVKL+ + +EREK+DN ADL+A+++TLQNLEKAYIRDCVTP+EYTAACSKLLVQYK A
Sbjct: 9   FEEVKLYRHAREREKYDNMADLFALVSTLQNLEKAYIRDCVTPQEYTAACSKLLVQYKVA 68

Query: 64  FKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTM 123
           FK VQG+EYPT+E FVKK+RLDCP+ALERIREDRPITI+DDKGNTSKCIADIVS+FIT M
Sbjct: 69  FKLVQGDEYPTIEAFVKKFRLDCPAALERIREDRPITIRDDKGNTSKCIADIVSMFITLM 128

Query: 124 DKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           DKLRL+I+AMD+LQP+LRDL+DTMNRLS++P  FEGKEKVS WL TL SM ASDEL+ETQ
Sbjct: 129 DKLRLEIRAMDDLQPELRDLLDTMNRLSLIPDSFEGKEKVSTWLATLNSMQASDELSETQ 188

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201200|gb|EFN81106.1| Vacuolar protein sorting-associated protein 28-like protein [Harpegnathos saltator]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/179 (79%), Positives = 166/179 (92%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK DNQADLYAV+NTLQ+LEKAYIRDCVTPKEYTAACSKLLVQY+AAF
Sbjct: 12  EEVKLYKNAREREKHDNQADLYAVVNTLQHLEKAYIRDCVTPKEYTAACSKLLVQYRAAF 71

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           KQVQ +++PT++ F + +RLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 72  KQVQSDQFPTIDSFTRAFRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITLMD 131

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
           KLRL+I+AMD+L PDLRDLMDTMNRLSILPS F+GKEKV+ WL  L++MSASDEL++TQ
Sbjct: 132 KLRLEIRAMDQLHPDLRDLMDTMNRLSILPSDFDGKEKVAEWLQILDNMSASDELSDTQ 190

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087767|ref|XP_975031.1| PREDICTED: similar to Vacuolar protein sorting-associated protein 28 homolog [Tribolium castaneum] gi|270010745|gb|EFA07193.1| hypothetical protein TcasGA2_TC010199 [Tribolium castaneum]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 166/180 (92%)

Query: 5   EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
           EEVKL+ N +EREK+DN ADL+AVINTLQ LEKAYIRDCVTPKEYT ACSKLLVQYKAAF
Sbjct: 13  EEVKLYHNAREREKYDNLADLFAVINTLQQLEKAYIRDCVTPKEYTGACSKLLVQYKAAF 72

Query: 65  KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
           +QV+G+E+PTV+ FV+KYRLDCP+ALERI+EDRPITIKDDKGNTSKCIADIVSLFIT MD
Sbjct: 73  RQVKGDEFPTVDAFVRKYRLDCPAALERIKEDRPITIKDDKGNTSKCIADIVSLFITIMD 132

Query: 125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQF 184
           KLRLDIKAMD+L P+LRDL+DTMNRLSI+PS FEGK+KV+ WL TL +M ASDEL+++Q 
Sbjct: 133 KLRLDIKAMDDLHPELRDLVDTMNRLSIIPSDFEGKQKVTEWLNTLNNMQASDELSDSQI 192

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
FB|FBgn0021814	210	Vps28 "Vacuolar protein sortin	0.967	0.852	0.743	1.4e-69
UNIPROTKB|Q3T178	221	VPS28 "Vacuolar protein sortin	0.967	0.809	0.698	1.5e-67
UNIPROTKB|F1RSP0	228	VPS28 "Uncharacterized protein	0.967	0.785	0.698	1.5e-67
MGI|MGI:1914164	221	Vps28 "vacuolar protein sortin	0.967	0.809	0.698	1.5e-67
RGD|1306537	228	Vps28 "vacuolar protein sortin	0.967	0.785	0.698	1.5e-67
UNIPROTKB|Q9UK41	221	VPS28 "Vacuolar protein sortin	0.967	0.809	0.692	4e-67
UNIPROTKB|E1BIB3	221	E1BIB3 "Uncharacterized protei	0.967	0.809	0.592	2.6e-54
WB|WBGene00013598	210	vps-28 [Caenorhabditis elegans	0.962	0.847	0.491	1.1e-39
DICTYBASE|DDB_G0285295	288	vps28 "vacuolar protein sortin	0.972	0.625	0.425	1.7e-36
TAIR|locus:2138426	210	VPS28-2 "AT4G05000" [Arabidops	0.956	0.842	0.416	1.2e-35

FB|FBgn0021814 Vps28 "Vacuolar protein sorting 28" [Drosophila melanogaster (taxid:7227)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 133/179 (74%), Positives = 153/179 (85%)

Query:     5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
             EEVKLF N +EREK+DN ADLYA+INT+Q LEKAYIRDC+TP+EYTAACSK LVQYK AF
Sbjct:    10 EEVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAF 69

Query:    65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
             KQVQ +E+P+VE FVKK+RLDCP+ALERIREDRPITI+DDKGNTSKCIA+IVSLFIT MD
Sbjct:    70 KQVQCDEFPSVETFVKKFRLDCPAALERIREDRPITIRDDKGNTSKCIAEIVSLFITIMD 129

Query:   125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
             KLRL I  MD LQPD++DL D MNRLS++P  F+ K KV  WL +L  M ASDEL+E Q
Sbjct:   130 KLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLKVEKWLGSLNEMQASDELSEGQ 188

GO:0005575 "cellular_component" evidence=ND

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0044130 "negative regulation of growth of symbiont in host" evidence=IMP

GO:0010797 "regulation of multivesicular body size involved in endosome transport" evidence=IDA

UNIPROTKB|Q3T178 VPS28 "Vacuolar protein sorting-associated protein 28 homolog" [Bos taurus (taxid:9913)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query:     5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
             EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct:    22 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 81

Query:    65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
             +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct:    82 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141

Query:   125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
             KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct:   142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200

GO:0005737 "cytoplasm" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1RSP0 VPS28 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query:     5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
             EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct:    29 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 88

Query:    65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
             +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct:    89 RQVQGSEVSSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 148

Query:   125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
             KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct:   149 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 207

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

MGI|MGI:1914164 Vps28 "vacuolar protein sorting 28 (yeast)" [Mus musculus (taxid:10090)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query:     5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
             EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct:    22 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 81

Query:    65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
             +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct:    82 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141

Query:   125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
             KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct:   142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO

RGD|1306537 Vps28 "vacuolar protein sorting 28 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 125/179 (69%), Positives = 157/179 (87%)

Query:     5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
             EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct:    29 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 88

Query:    65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
             +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct:    89 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 148

Query:   125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
             KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct:   149 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 207

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005768 "endosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO;ISS

UNIPROTKB|Q9UK41 VPS28 "Vacuolar protein sorting-associated protein 28 homolog" [Homo sapiens (taxid:9606)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 124/179 (69%), Positives = 157/179 (87%)

Query:     5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
             EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCV+P EYTAACS+LLVQYKAAF
Sbjct:    22 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAF 81

Query:    65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
             +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VSLFIT MD
Sbjct:    82 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMD 141

Query:   125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
             KLRL+I+AMDE+QPDLR+LM+TM+R+S LP  FEG++ VS WL TL  MSASDEL+++Q
Sbjct:   142 KLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQ 200

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010008 "endosome membrane" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BIB3 E1BIB3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 106/179 (59%), Positives = 140/179 (78%)

Query:     5 EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAF 64
             EEVKL+ N +EREK+DN A+L+AV+ T+Q LEKAYI+DCVTP EYTAACS+LLVQYKAAF
Sbjct:    22 EEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAF 81

Query:    65 KQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFITTMD 124
             +QVQG E  +++ F +K+RLDCP A+ERI+EDRPITIKDDKGN ++CIAD+VS+ IT   
Sbjct:    82 RQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSVRITNSM 141

Query:   125 KLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
              + L+IK  ++ + D++  + T N L   P+ F G +KVS  L TL  MSASDEL+++Q
Sbjct:   142 DMSLNIKKQNKTKKDVQLFLKTSNYLKTSPTRFSGAQKVSRVLQTLSGMSASDELDDSQ 200

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

WB|WBGene00013598 vps-28 [Caenorhabditis elegans (taxid:6239)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 89/181 (49%), Positives = 121/181 (66%)

Query:     2 ANL-EEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQY 60
             ANL  EV+LF N  ERE+ +N ++L+AV+N L++LEK + RD V+  EY + C KL+ QY
Sbjct:     6 ANLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQY 65

Query:    61 KAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIADIVSLFI 120
             K   + V G    ++E F KKYRL CP+A+ERIRE RPIT+KDD+GN  K IA IV  FI
Sbjct:    66 KVTMRLVHGAT--SIEDFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASIVEQFI 123

Query:   121 TTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELN 180
             T +D LRL+ +A+D+L P L DL + +N  S +P       KV  W   L SM+ASDE++
Sbjct:   124 TFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAASDEIS 183

Query:   181 E 181
             +
Sbjct:   184 D 184

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000813 "ESCRT I complex" evidence=IPI

GO:0032801 "receptor catabolic process" evidence=IMP

DICTYBASE|DDB_G0285295 vps28 "vacuolar protein sorting 28 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 80/188 (42%), Positives = 126/188 (67%)

Query:     3 NLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKA 62
             N++EVKLF N  ERE ++N A+LY++I   ++LEKAYIRD V+PK+YT ACSKL+ Q+K+
Sbjct:    81 NIKEVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKS 140

Query:    63 AFKQVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKDDKGNTS------KCIADI 115
             + + +  ++   V  F+K Y L+C +A +R + +  P T++ +   +S      K +A+ 
Sbjct:   141 S-QTLLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEA 199

Query:   116 VSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSA 175
             V LFITTMD +RL + ++D + P L DLM+++N+   L   FEGKEK+  W++ L  M A
Sbjct:   200 VQLFITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEKIKNWISILNQMKA 259

Query:   176 SDELNETQ 183
             +DEL++ Q
Sbjct:   260 TDELDDDQ 267

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0006605 "protein targeting" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

TAIR|locus:2138426 VPS28-2 "AT4G05000" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 77/185 (41%), Positives = 117/185 (63%)

Query:     6 EVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK 65
             EVKL+ + +ERE ++N A+L+A+I   + LEKAYIRD + P EY + C KL+V +K    
Sbjct:     3 EVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLSA 62

Query:    66 QVQGEEYPTVEHFVKKYRLDCPSALER-IREDRPITIKD------DKGNTSKCIADIVSL 118
              ++ +  P +E F   Y++DCP+AL R +    P T++          N++  +A+ V  
Sbjct:    63 TLK-DTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQN 121

Query:   119 FITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDE 178
             FIT+MD L+L++ A+D++ P L DL  ++N+LSILP  FEGK K+  WL+ L  M A+DE
Sbjct:   122 FITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGAADE 181

Query:   179 LNETQ 183
             L E Q
Sbjct:   182 LTEQQ 186

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0000813 "ESCRT I complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NF1	VPS28_DICDI	No assigned EC number	0.4255	0.9729	0.625	yes	N/A
Q9V359	VPS28_DROME	No assigned EC number	0.7430	0.9675	0.8523	yes	N/A
Q9D1C8	VPS28_MOUSE	No assigned EC number	0.6983	0.9675	0.8099	yes	N/A
Q9UK41	VPS28_HUMAN	No assigned EC number	0.6927	0.9675	0.8099	yes	N/A
Q3T178	VPS28_BOVIN	No assigned EC number	0.6983	0.9675	0.8099	yes	N/A
Q9NA26	VPS28_CAEEL	No assigned EC number	0.4917	0.9621	0.8476	yes	N/A
B5DEN9	VPS28_RAT	No assigned EC number	0.6983	0.9675	0.7850	yes	N/A
Q9S9T7	VP282_ARATH	No assigned EC number	0.4162	0.9567	0.8428	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	185
pfam03997	187	pfam03997, VPS28, VPS28 protein	4e-83

>gnl|CDD|217833 pfam03997, VPS28, VPS28 protein

 Score =  243 bits (621), Expect = 4e-83
 Identities = 101/167 (60%), Positives = 126/167 (75%), Gaps = 6/167 (3%)

Query: 23  ADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKY 82
           ++LYA++  L+ LEKAYI+DCV+P EYT+ CSKL+VQYK AF+ VQG E+P++E F KKY
Sbjct: 2   SELYAILKALEQLEKAYIKDCVSPSEYTSTCSKLIVQYKVAFRSVQGTEFPSIEDFCKKY 61

Query: 83  RLDCPSALERIREDRPITIKD------DKGNTSKCIADIVSLFITTMDKLRLDIKAMDEL 136
           RLDCP+A+ERIRE RPIT +D      DKGN +KCIA+IV  FIT MD LRL+I A D+L
Sbjct: 62  RLDCPAAIERIREGRPITAEDSIAPSNDKGNIAKCIAEIVQNFITVMDALRLNINAKDQL 121

Query: 137 QPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQ 183
            P L +L+ +MNRLS LP  FEG+ KV  WL  L  MSASDEL + Q
Sbjct: 122 HPLLSELIVSMNRLSRLPIDFEGRNKVKQWLIRLNKMSASDELTDVQ 168

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG3284|consensus	213		100.0
PF03997	188	VPS28: VPS28 protein; InterPro: IPR007143 The Endo	100.0
PF09454	65	Vps23_core: Vps23 core domain; InterPro: IPR017916	93.33
PF09851	31	SHOCT: Short C-terminal domain; InterPro: IPR01864	89.89

>KOG3284|consensus

Probab=100.00  E-value=6.8e-83  Score=530.45  Aligned_cols=183  Identities=63%  Similarity=1.057  Sum_probs=180.4

Q ss_pred             CccccccCCCchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHh
Q psy12912          3 NLEEVKLFTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKY   82 (185)
Q Consensus         3 ~~~EV~L~~~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~~v~~~~~~~l~~F~~~y   82 (185)
                      +++|||||+|++|||+|||||||||||+|+|+|||||+||+|++.|||++|.|||.|||+++++++|.+|++||.|+++|
T Consensus         8 l~~Evkl~~N~rerE~~enlseLyaIi~ale~LEKAyirD~is~sey~s~c~kLi~Q~k~~~~~~~~~~f~SiE~Fc~ky   87 (213)
T KOG3284|consen    8 LYEEVKLFNNAREREVYENLSELYAIIKALEQLEKAYIRDCISPSEYTSECSKLIVQYKVAFRSVQGTEFPSIEDFCKKY   87 (213)
T ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             cCCChHHHhhhhhcCCCceec------CCCCchhHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCC
Q psy12912         83 RLDCPSALERIREDRPITIKD------DKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSG  156 (185)
Q Consensus        83 ~l~cp~A~~Rl~~G~PaTie~------~~~~~~~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~d  156 (185)
                      +|+||+|++||++|+|+|++|      ++|+++|+|||+||||||+|||||||++|||||||+|+||+.|||+++.+|+|
T Consensus        88 rl~cp~Ai~Ri~~~~piT~e~~ia~s~dk~~~ak~IAe~v~nFIT~mDaLrLn~~A~Dql~PlL~dL~~smnrls~~p~d  167 (213)
T KOG3284|consen   88 RLDCPAAIERIREGRPITVEDRIAPSADKGNSAKCIAEIVQNFITVMDALRLNINAVDQLYPLLSDLSASMNRLSRLPPD  167 (213)
T ss_pred             ccCChHHHHHHHcCCCCcccccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcchHHHHHHHHHhhccCCcc
Confidence            999999999999999999999      78999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHHhcCCCCccCCccccC
Q psy12912        157 FEGKEKVSGWLTTLESMSASDELNETQFN  185 (185)
Q Consensus       157 f~gr~kl~~Wl~kLn~M~AsdeL~eeq~~  185 (185)
                      |+||.||++||++||+|.|||||+|.|+|
T Consensus       168 fe~r~Kv~~Wl~rls~M~asDeL~e~q~R  196 (213)
T KOG3284|consen  168 FEGRTKVKQWLIRLSKMSASDELTEQQVR  196 (213)
T ss_pred             chhHHHHHHHHHHHhcccccccccHHHHH
Confidence            99999999999999999999999999987

>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=100.00  E-value=4.9e-77  Score=495.71  Aligned_cols=164  Identities=54%  Similarity=0.908  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCChHHHhhhhhcCCCce
Q psy12912         22 QADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGEEYPTVEHFVKKYRLDCPSALERIREDRPITI  101 (185)
Q Consensus        22 lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~~v~~~~~~~l~~F~~~y~l~cp~A~~Rl~~G~PaTi  101 (185)
                      ||||||||+|||+||||||||+||++|||++|+|||+|||++++.++++.|+||++|+++|+|+||+|++||++|+|+||
T Consensus         1 LAeLysII~tle~LEkayikD~It~~eYt~~c~kLl~Qyk~~~~~~~~~~~~~le~F~~~y~l~cp~A~~Rl~~G~P~Ti   80 (188)
T PF03997_consen    1 LAELYSIIKTLEHLEKAYIKDSITEKEYTTACNKLLNQYKTILKQLKDDEFPDLEEFMKKYNLDCPAALERLREGVPATI   80 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTS-HHHHHHHHHCTSS---
T ss_pred             ChHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHhcccCChHHHHHHcCCCCch
Confidence            79999999999999999999999999999999999999999999986547899999999999999999999999999999


Q ss_pred             ec------CCCCchhHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHhcCCC
Q psy12912        102 KD------DKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSA  175 (185)
Q Consensus       102 e~------~~~~~~~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~df~gr~kl~~Wl~kLn~M~A  175 (185)
                      +|      +++++||+|||+||||||+|||||||++|||||||+|+||+.||||++.+|+||+||+||++|+++||+|+|
T Consensus        81 e~~~~~~~~~~~~ak~Vae~t~~FIT~mDaLKLn~~a~DqLhPlL~dL~~slnr~~~~~~dfe~r~kl~~Wl~~Ln~m~a  160 (188)
T PF03997_consen   81 EHRISSSSDKGNSAKLVAEATQNFITLMDALKLNYRAKDQLHPLLSDLMQSLNRVTDLPPDFEGRSKLVEWLIKLNGMKA  160 (188)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHTT--BHHHHHHHHHHHHHHHHHCTTS-TT-CCHHHHHHHHHHHHTS-T
T ss_pred             hhhcccccCCchHHHHHHHHhChhhhhhHHHhccchhHhhHhhHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHhCCCc
Confidence            99      467789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCccccC
Q psy12912        176 SDELNETQFN  185 (185)
Q Consensus       176 sdeL~eeq~~  185 (185)
                      +|||||+|+|
T Consensus       161 sdeL~e~q~r  170 (188)
T PF03997_consen  161 SDELSEEQAR  170 (188)
T ss_dssp             T-B--HHHHH
T ss_pred             ccccCHHHHH
Confidence            9999999986

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.

>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=93.33  E-value=0.4  Score=33.92  Aligned_cols=48  Identities=15%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             CCCchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHH
Q psy12912         10 FTNTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLL   57 (185)
Q Consensus        10 ~~~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl   57 (185)
                      -.++..++.||-.|+-.+|==|+.+|.+|+-++.|+-+.|-.....|=
T Consensus         6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~La   53 (65)
T PF09454_consen    6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLA   53 (65)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999988876653

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.

>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function

Probab=89.89  E-value=0.48  Score=28.76  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhhhccCCChHHHHHHHHHHH
Q psy12912         29 INTLQNLEKAYIRDCVTPKEYTAACSKLL   57 (185)
Q Consensus        29 I~tle~LEkAyirD~It~~eYt~~c~kLl   57 (185)
                      .-.|+.|...|-++.||++||...=.+||
T Consensus         2 ~~~L~~L~~l~~~G~IseeEy~~~k~~ll   30 (31)
T PF09851_consen    2 EDRLEKLKELYDKGEISEEEYEQKKARLL   30 (31)
T ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence            45688999999999999999999888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
2j9w_A	102	Structural Insight Into The Escrt-I-Ii Link And Its		3e-29
2f66_B	116	Structure Of The Escrt-I Endosomal Trafficking Comp		8e-10
2caz_B	155	Escrt-I Core Length = 155		1e-09
2f6m_B	109	Structure Of A Vps23-C:vps28-N Subcomplex Length =		2e-08
2p22_B	118	Structure Of The Yeast Escrt-i Heterotetramer Core		3e-08
2j9v_A	99	2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps		6e-08
2j9u_A	96	2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps		8e-08
2g3k_A	94	Crystal Structure Of The C-Terminal Domain Of Vps28		3e-07

>pdb|2J9W|A Chain A, Structural Insight Into The Escrt-I-Ii Link And Its Role In Mvb Trafficking Length = 102

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 69/78 (88%)
Query: 106 GNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSG 165
           GN ++CIADIVSLFIT MDKLRL+I+AMDE+QPDLR+LM+TMNR+S LP  FEG+EKVS 
Sbjct: 4   GNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQ 63
Query: 166 WLTTLESMSASDELNETQ 183
           WL  L SMSASDEL+++Q
Sbjct: 64  WLQKLSSMSASDELDDSQ 81

>pdb|2F66|B Chain B, Structure Of The Escrt-I Endosomal Trafficking Complex Length = 116

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 11  DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 70
Query: 62  AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERIREDRPIT 100
                   EE    + ++E F   Y +   +A+ R+    PIT
Sbjct: 71  VYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLERGIPIT 113

>pdb|2CAZ|B Chain B, Escrt-I Core Length = 155

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 28  DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 87
Query: 62  AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERIREDRPIT 100
                   EE    + ++E F   Y +   +A+ R+    PIT
Sbjct: 88  VYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRLERGIPIT 130

>pdb|2F6M|B Chain B, Structure Of A Vps23-C:vps28-N Subcomplex Length = 109

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 11  DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 70
Query: 62  AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERI 93
                   EE    + ++E F   Y +   +A+ R+
Sbjct: 71  VYLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 106

>pdb|2P22|B Chain B, Structure Of The Yeast Escrt-i Heterotetramer Core Length = 118

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 20  DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 79
Query: 62  AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERI 93
                   EE    + ++E F   Y +   +A+ R+
Sbjct: 80  VYLNSQNKEEINKHFQSIEAFADTYNITASNAITRL 115

>pdb|2J9V|A Chain A, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C- Terminus Length = 99

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 109 SKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLT 168
           +K +A+    FIT MD L+L+  A D+L P L +L+ ++NR++     FE + K+  W+ 
Sbjct: 7   AKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIV 64
Query: 169 TLESMSASDELNETQ 183
            +  +S  D L ETQ
Sbjct: 65  RINKLSIGDTLTETQ 79

>pdb|2J9U|A Chain A, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C- Terminus In Complex With The Nzf-N Domain From Escrt-Ii Length = 96

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 109 SKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLT 168
           +K +A+    FIT MD L+L+  A D+L P L +L+ ++NR++     FE + K+  W+ 
Sbjct: 4   AKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIV 61
Query: 169 TLESMSASDELNETQ 183
            +  +S  D L ETQ
Sbjct: 62  RINKLSIGDTLTETQ 76

>pdb|2G3K|A Chain A, Crystal Structure Of The C-Terminal Domain Of Vps28 Length = 94

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 109 SKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLT 168
           +K +A+    FIT  D L+L+  A D+L P L +L+ ++NR++     FE + K+  W+ 
Sbjct: 3   AKYVAEATGNFITVXDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIV 60
Query: 169 TLESMSASDELNETQ 183
            +  +S  D L ETQ
Sbjct: 61  RINKLSIGDTLTETQ 75
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
2caz_B	155	Vacuolar protein sorting-associated protein VPS28;	1e-44
2f6m_B	109	Vacuolar protein sorting-associated protein VPS28;	2e-36
2p22_B	118	Vacuolar protein sorting-associated protein 28; en	6e-36
2j9w_A	102	VPS28, VPS28-PROV protein; NZF finger, HIV budding	1e-32
2j9u_A	96	VPS28, vacuolar protein sorting-associated protein	1e-24

>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2 Length = 155

 Score =  144 bits (363), Expect = 1e-44
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 28  DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 87

Query: 62  AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERIREDRPITIKDDKGNTSKCIAD 114
                   EE    + ++E F   Y +   +A+ R+    PIT +     T+   + 
Sbjct: 88  VYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRLERGIPITAEHAISTTTSAPSG 144

>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B Length = 109

 Score =  121 bits (305), Expect = 2e-36
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 11  DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 70

Query: 62  AAFKQVQGE----EYPTVEHFVKKYRLDCPSALERIRE 95
                   E     + ++E F   Y +   +A+ R+  
Sbjct: 71  VYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLER 108

>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} Length = 118

 Score =  120 bits (303), Expect = 6e-36
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 20  DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 79

Query: 62  AAFKQVQGE----EYPTVEHFVKKYRLDCPSALERIRE 95
                   E     + ++E F   Y +   +A+ R+  
Sbjct: 80  VYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLER 117

>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis} Length = 102

 Score =  111 bits (280), Expect = 1e-32
 Identities = 57/80 (71%), Positives = 69/80 (86%)

Query: 104 DKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKV 163
             GN ++CIADIVSLFIT MDKLRL+I+AMDE+QPDLR+LM+TMNR+S LP  FEG+EKV
Sbjct: 2   HMGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKV 61

Query: 164 SGWLTTLESMSASDELNETQ 183
           S WL  L SMSASDEL+++Q
Sbjct: 62  SQWLQKLSSMSASDELDDSQ 81

>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A Length = 96

 Score = 91.6 bits (227), Expect = 1e-24
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 108 TSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWL 167
            +K +A+    FIT MD L+L+  A D+L P L +L+ ++NR++     FE + K+  W+
Sbjct: 3   NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWI 60

Query: 168 TTLESMSASDELNETQ 183
             +  +S  D L ETQ
Sbjct: 61  VRINKLSIGDTLTETQ 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
2caz_B	155	Vacuolar protein sorting-associated protein VPS28;	100.0
2f6m_B	109	Vacuolar protein sorting-associated protein VPS28;	100.0
2p22_B	118	Vacuolar protein sorting-associated protein 28; en	100.0
2j9w_A	102	VPS28, VPS28-PROV protein; NZF finger, HIV budding	100.0
2j9u_A	96	VPS28, vacuolar protein sorting-associated protein	100.0
2f6m_A	65	Suppressor protein STP22 of temperature-sensitive	91.25

>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2

Probab=100.00  E-value=2.1e-46  Score=302.02  Aligned_cols=106  Identities=27%  Similarity=0.583  Sum_probs=90.0

Q ss_pred             CCCccccccCC---CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHH-----hhcCCCC
Q psy12912          1 MANLEEVKLFT---NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK-----QVQGEEY   72 (185)
Q Consensus         1 ~~~~~EV~L~~---~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~-----~v~~~~~   72 (185)
                      +.+++||+||+   |++||++||+||||||||+|||+||||||||+|+++|||++|+|||+|||++++     .|+ +.|
T Consensus        24 ~~l~eEVkL~~~~~s~~ERe~yE~LAeLYSII~tLE~LEKAYikD~It~~eYT~aC~rLL~QYKt~~~~~~~~~v~-~~~  102 (155)
T 2caz_B           24 QLFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEIN-KHF  102 (155)
T ss_dssp             -------CCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHTSSSCHHHH-HHT
T ss_pred             hhhhceeehhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcchhHHHH-HHC
Confidence            35789999999   999999999999999999999999999999999999999999999999999999     676 669


Q ss_pred             CCHHHHHHHhcCCChHHHhhhhhcCCCceecCCCC
Q psy12912         73 PTVEHFVKKYRLDCPSALERIREDRPITIKDDKGN  107 (185)
Q Consensus        73 ~~l~~F~~~y~l~cp~A~~Rl~~G~PaTie~~~~~  107 (185)
                      |||++|+++|+|+||+|++||++|+|+||+|.+++
T Consensus       103 ~dle~F~~~Y~l~CP~A~~RL~~GvPaTve~~~~~  137 (155)
T 2caz_B          103 QSIEAFCDTYNITASNAITRLERGIPITAEHAIST  137 (155)
T ss_dssp             CSHHHHHHHTTCCCTTHHHHHHSCCSCC-------
T ss_pred             CCHHHHHHHhCCcChHHHHHHhcCCCchhccCCCC
Confidence            99999999999999999999999999999986544

>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B

Probab=100.00  E-value=2.7e-43  Score=270.40  Aligned_cols=94  Identities=28%  Similarity=0.622  Sum_probs=90.3

Q ss_pred             CCccccccCC---CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHH-----hhcCCCCC
Q psy12912          2 ANLEEVKLFT---NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK-----QVQGEEYP   73 (185)
Q Consensus         2 ~~~~EV~L~~---~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~-----~v~~~~~~   73 (185)
                      .+++||+||+   |++||++|||||||||||+|||+||||||||+||++|||++|+|||+|||++++     .|+ +.||
T Consensus         8 ~l~~EV~L~~~~~~~~eRe~ye~LAelYSII~tle~LEkAyikD~It~~eYt~~c~rLL~QyKt~~~~~~~~~v~-~~~~   86 (109)
T 2f6m_B            8 LFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEIN-KHFQ   86 (109)
T ss_dssp             HTCSCCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTTTHHH-HHHH
T ss_pred             hhhhhhhhhhccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHCC
Confidence            3689999999   999999999999999999999999999999999999999999999999999999     676 6699


Q ss_pred             CHHHHHHHhcCCChHHHhhhhhc
Q psy12912         74 TVEHFVKKYRLDCPSALERIRED   96 (185)
Q Consensus        74 ~l~~F~~~y~l~cp~A~~Rl~~G   96 (185)
                      ||++|+++|+|+||+|++||++|
T Consensus        87 ~le~F~~~y~l~cp~A~~RL~~G  109 (109)
T 2f6m_B           87 SIEAFADTYNITASNAITRLERG  109 (109)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHC
T ss_pred             CHHHHHHHhCCCChHHHHHHhCC
Confidence            99999999999999999999988

>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-43  Score=271.19  Aligned_cols=94  Identities=28%  Similarity=0.622  Sum_probs=72.1

Q ss_pred             CCccccccCC---CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHH-----hhcCCCCC
Q psy12912          2 ANLEEVKLFT---NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFK-----QVQGEEYP   73 (185)
Q Consensus         2 ~~~~EV~L~~---~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~-----~v~~~~~~   73 (185)
                      .+++||+||+   |++||++||+||||||||+|||+||||||||+||++|||++|+|||+|||++++     .|+ +.||
T Consensus        17 ~l~~EV~L~~~~~~~~eRe~ye~LAeLYSII~tle~LEKAyikD~It~~eYt~~C~rLL~QYKt~~~~~~~~~v~-~~~~   95 (118)
T 2p22_B           17 LFHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEIN-KHFQ   95 (118)
T ss_dssp             GGCSCCCSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHTTTTTC-------
T ss_pred             HhhchhhhhcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcccHHHHH-HHCC
Confidence            5789999999   999999999999999999999999999999999999999999999999999999     676 6799


Q ss_pred             CHHHHHHHhcCCChHHHhhhhhc
Q psy12912         74 TVEHFVKKYRLDCPSALERIRED   96 (185)
Q Consensus        74 ~l~~F~~~y~l~cp~A~~Rl~~G   96 (185)
                      ||++|+++|+|+||+|++||++|
T Consensus        96 dle~F~~~y~l~cP~A~~RL~~G  118 (118)
T 2p22_B           96 SIEAFADTYNITASNAITRLERG  118 (118)
T ss_dssp             -------------CCHHHHHTC-
T ss_pred             CHHHHHHHhCCCChHHHHHHhCC
Confidence            99999999999999999999988

>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}

Probab=100.00  E-value=1.8e-41  Score=257.64  Aligned_cols=83  Identities=69%  Similarity=1.085  Sum_probs=81.1

Q ss_pred             cCCCCchhHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHhcCCCCccCCcc
Q psy12912        103 DDKGNTSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNET  182 (185)
Q Consensus       103 ~~~~~~~~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~df~gr~kl~~Wl~kLn~M~AsdeL~ee  182 (185)
                      |++|+++++|||+||||||+||+|||||+|||||||+|+||+.||||++.+|+||+||.||++|+++||+|+|+|||+|+
T Consensus         1 ~~~~~~~~~IAe~v~~FIT~mDaLKLn~~a~DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln~M~AsdeL~e~   80 (102)
T 2j9w_A            1 HHMGNLNRCIADIVSLFITVMDKLRLEIRAMDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSMSASDELDDS   80 (102)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHHTSCTTCBCCHH
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHhcchhHHhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHcCCcccccCCHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy12912        183 QFN  185 (185)
Q Consensus       183 q~~  185 (185)
                      |+|
T Consensus        81 q~R   83 (102)
T 2j9w_A           81 QVR   83 (102)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A

Probab=100.00  E-value=5.4e-39  Score=241.74  Aligned_cols=76  Identities=36%  Similarity=0.643  Sum_probs=74.4

Q ss_pred             chhHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHhcCCCCccCCccccC
Q psy12912        108 TSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQFN  185 (185)
Q Consensus       108 ~~~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~df~gr~kl~~Wl~kLn~M~AsdeL~eeq~~  185 (185)
                      +|++|||+||||||+||+||||++|||||||+|+||+.|+||++  |+||+||.||++|+++||+|+|+|||+|+|+|
T Consensus         3 ~~~~iAe~~~~FIT~mDaLKL~~~a~DqLhP~L~dL~~sl~r~~--~~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q~R   78 (96)
T 2j9u_A            3 NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIR   78 (96)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHC--CCCCTTHHHHHHHHHHHHTSCTTCBCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhcchhHHhhCchHHHHHHHccCCC--CCCCchHHHHHHHHHHHcCCcccccCCHHHHH
Confidence            48999999999999999999999999999999999999999998  99999999999999999999999999999986

>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*

Probab=91.25  E-value=0.66  Score=32.16  Aligned_cols=46  Identities=15%  Similarity=0.254  Sum_probs=42.3

Q ss_pred             CchHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHH
Q psy12912         12 NTKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLL   57 (185)
Q Consensus        12 ~~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl   57 (185)
                      +|..++.||..|+=.+|=-|+.+|.+|.-++.|+-+.|-.....|-
T Consensus         2 ~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~La   47 (65)
T 2f6m_A            2 TDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELA   47 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5778999999999999999999999999999999999998876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d2f6mb1	104	a.2.17.2 (B:15-118) Vacuolar protein sorting-assoc	1e-40
d2j9ua1	94	a.24.28.1 (A:148-241) Vacuolar protein sorting-ass	1e-30

>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 104

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS28 N-terminal domain
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  131 bits (331), Expect = 1e-40
 Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 5   EEVKLFTNT---KEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYK 61
           +EV LF N+   K++E  +  +++Y+++ TL ++EKAY++D +   +YT    KLL Q+K
Sbjct: 6   DEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFK 65

Query: 62  AAFKQVQGEE----YPTVEHFVKKYRLDCPSALERIRE 95
                   EE    + ++E F   Y +   +A+ R+  
Sbjct: 66  VYLNSQNKEEINKHFQSIEAFADTYNITASNAITRLER 103

>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: VPS28 C-terminal domain-like
family: VPS28 C-terminal domain-like
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 1e-30
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 109 SKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLT 168
           +K +A+    FIT MD L+L+  A D+L P L +L+ ++NR++     FE + K+  W+ 
Sbjct: 3   AKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIV 60

Query: 169 TLESMSASDELNETQ 183
            +  +S  D L ETQ
Sbjct: 61  RINKLSIGDTLTETQ 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d2f6mb1	104	Vacuolar protein sorting-associated protein 28, VP	100.0
d2j9ua1	94	Vacuolar protein sorting-associated protein 28, VP	100.0
d2f6ma1	64	Vacuolar protein sorting-associated protein 23, VP	85.18

>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS28 N-terminal domain
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-44  Score=269.55  Aligned_cols=94  Identities=30%  Similarity=0.621  Sum_probs=88.9

Q ss_pred             CccccccCCC---chHHHhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHhhcCC----CCCCH
Q psy12912          3 NLEEVKLFTN---TKEREKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLLVQYKAAFKQVQGE----EYPTV   75 (185)
Q Consensus         3 ~~~EV~L~~~---~~eRe~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl~Qyk~~~~~v~~~----~~~~l   75 (185)
                      ++|||+||+|   ++||++|||||+|||||+|||+||||||||+||++|||++|+|||+|||+++++++++    .|+||
T Consensus         4 ~~eEV~l~~n~~t~~eRe~yd~LAelysII~tLe~LEkAyikD~It~~eYt~~c~rLl~QyK~~~~~~~~~~v~~~f~~l   83 (104)
T d2f6mb1           4 FHDEVPLFDNSITSKDKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSI   83 (104)
T ss_dssp             TCSCCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCTTTTHHHHHHHHH
T ss_pred             hHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhhhHHhhhccCCH
Confidence            5899999996   8999999999999999999999999999999999999999999999999999876543    37899


Q ss_pred             HHHHHHhcCCChHHHhhhhhc
Q psy12912         76 EHFVKKYRLDCPSALERIRED   96 (185)
Q Consensus        76 ~~F~~~y~l~cp~A~~Rl~~G   96 (185)
                      ++|+++|+|+||+|++||++|
T Consensus        84 e~F~~~y~l~cP~A~~RL~~G  104 (104)
T d2f6mb1          84 EAFADTYNITASNAITRLERG  104 (104)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHC
T ss_pred             HHHHHHHCcCChHHHHHHhcC
Confidence            999999999999999999998

>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: VPS28 C-terminal domain-like
family: VPS28 C-terminal domain-like
domain: Vacuolar protein sorting-associated protein 28, VPS28
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-39  Score=241.28  Aligned_cols=76  Identities=36%  Similarity=0.643  Sum_probs=74.0

Q ss_pred             chhHHHhhhhhhHHHHhhhccccchhhhhcchHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHhcCCCCccCCccccC
Q psy12912        108 TSKCIADIVSLFITTMDKLRLDIKAMDELQPDLRDLMDTMNRLSILPSGFEGKEKVSGWLTTLESMSASDELNETQFN  185 (185)
Q Consensus       108 ~~~~Iae~t~~FIT~MDaLKL~~~a~DqLhPlL~dL~~sln~~~~~p~df~gr~kl~~Wl~kLn~M~AsdeL~eeq~~  185 (185)
                      .||+|||+||||||+|||||||++|||||||+|+||+.||||++  |+||+||.||++|+++||+|+|+|||+|+|+|
T Consensus         2 ~ak~Vae~~~~FIT~mDaLkL~~~a~DqLhPlL~dL~~slnrl~--~~dfegk~kv~~Wl~~Ln~M~AsdeL~e~q~R   77 (94)
T d2j9ua1           2 NAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSKLIDWIVRINKLSIGDTLTETQIR   77 (94)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHC--CCCCTTHHHHHHHHHHHHTSCTTCBCCHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhhcCcchhhhchhHHHHHHHHHhcC--ccccchHHHHHHHHHHHhCCchhhhcCHHHHH
Confidence            58999999999999999999999999999999999999999996  78999999999999999999999999999986

>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Endosomal sorting complex assembly domain
family: VPS23 C-terminal domain
domain: Vacuolar protein sorting-associated protein 23, VPS23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.18  E-value=1.1  Score=29.34  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=37.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHH
Q psy12912         17 EKFDNQADLYAVINTLQNLEKAYIRDCVTPKEYTAACSKLL   57 (185)
Q Consensus        17 e~ye~lAelysII~tle~LEkAyirD~It~~eYt~~c~kLl   57 (185)
                      +.|+..|+=.+|=-|+.+|++|.-++.|+-+.|-.....|=
T Consensus         6 Ql~~l~Aed~AieDaiy~L~~aL~~G~I~~d~ylK~vR~La   46 (64)
T d2f6ma1           6 QLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELA   46 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence            67999999999999999999999999999999988876553