Psyllid ID: psy12915

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGGLQTRSIPA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MVLNNRLECVVALLSRMADvelvdnsgnTALHLAARGKNPAIVQALIVFGANINALCregtfqgpdccnIFKRWRTLKRLAgglqtrsipa
Flexible Loop (DISEMBL)
MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKrlagglqtrsipa
Low Complexity Region (SEG)
MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGGLQTRSIPA
Disordered region (IsUnstruct)
****NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGG********
Disordered Region (DISOPRED)
MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGGL*******
Disordered Region (DISEMBL)
MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGG********
Disordered Region (DISPRO)
**LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGGL*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGGLQTRSIPA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
O60733	806	85/88 kDa calcium-indepen	no	N/A	0.593	0.066	0.407	1e-05
P97819	807	85/88 kDa calcium-indepen	yes	N/A	0.549	0.061	0.452	1e-05
P97570	807	85/88 kDa calcium-indepen	no	N/A	0.549	0.061	0.452	3e-05
Q9W0T5	956	Transient receptor potent	no	N/A	0.725	0.069	0.355	4e-05
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.593	0.012	0.407	7e-05
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.593	0.027	0.407	7e-05
Q9J569	603	Putative ankyrin repeat p	N/A	N/A	0.857	0.129	0.341	9e-05
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.791	0.050	0.364	0.0003
Q811D2	1581	Ankyrin repeat domain-con	no	N/A	0.527	0.030	0.437	0.0003
Q28BK1	912	E3 ubiquitin-protein liga	no	N/A	0.593	0.059	0.425	0.0005

>sp|O60733|PLPL9_HUMAN 85/88 kDa calcium-independent phospholipase A2 OS=Homo sapiens GN=PLA2G6 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V+ NR +C + LL+  A+ +     GNT LHLA    N  +++ALIVFGA ++ 
Sbjct: 325 VMRNRFDCAIVLLTHGANADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVDT 378

Isoform ankyrin-iPLA2-1 and isoform ankyrin-iPLA2-2, which lack the catalytic domain, are probably involved in the negative regulation of iPLA2 activity.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 4

>sp|P97819|PLPL9_MOUSE 85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus GN=Pla2g6 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
           V+ NR +CV+ LL+  A+       GNT LHLA    N  +V+ALIVFGA ++
Sbjct: 325 VMRNRFDCVMVLLTYGANAGARGEHGNTPLHLAMSKDNMEMVKALIVFGAEVD 377

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|P97570|PLPL9_RAT 85/88 kDa calcium-independent phospholipase A2 OS=Rattus norvegicus GN=Pla2g6 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
           V  NR +CV+ LL+  A+       GNT LHLA    N  +V+ALIVFGA ++
Sbjct: 325 VTRNRFDCVMVLLTYGANAGARGEHGNTPLHLAMSKDNMEMVKALIVFGAEVD 377

Catalyzes the release of fatty acids from phospholipids. It has been implicated in normal phospholipid remodeling, nitric oxide-induced or vasopressin-induced arachidonic acid release and in leukotriene and prostaglandin production. May participate in fas mediated apoptosis and in regulating transmembrane ion flux in glucose-stimulated B-cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9W0T5|PYX_DROME Transient receptor potential channel pyrexia OS=Drosophila melanogaster GN=pyx PE=2 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 10/76 (13%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG--- 60
           N+ +EC   LL   A+V+  + S  T LHLA   ++   V  LI +GAN+NA+ R+G   
Sbjct: 276 NDYVECARLLLEHRAEVDCRNASHQTPLHLACLSQSIGTVDLLISYGANVNAVYRDGRTA 335

Query: 61  -------TFQGPDCCN 69
                    +  DCCN
Sbjct: 336 LHAAIVKQSRSLDCCN 351

Receptor-activated non-selective cation channel involved in protection or tolerance from high temperature stress. Activated by temperatures above 40 degrees Celsius. More permeable to K(+) than to Na(+). May act in stress protection allow flies to survive in natural environments.

Drosophila melanogaster (taxid: 7227)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 7   LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +E V  LL R A+V+     GNTALH+A+      +V+ L+  GAN+NA  + G
Sbjct: 87  VEVVSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNG 140

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 7   LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +E V  LL R A+V+     GNTALH+A+      +V+ L+  GAN+NA  + G
Sbjct: 70  VEVVSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNG 123

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q9J569|V162_FOWPN Putative ankyrin repeat protein FPV162 OS=Fowlpox virus (strain NVSL) GN=FPV162 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPA-IVQALIVFGANINALCREGT 61
           L+N  + +  L+   ADV++ +N G T LHLAA+  + +  V+ LI+ GA++NA C EG 
Sbjct: 170 LSNTNKTIETLIELGADVKIKNNDGITPLHLAAKSSSDSKTVETLILHGADVNATCSEGN 229

Query: 62  FQGPDCCNIFKRWRTLKRL 80
               D    ++   T++ L
Sbjct: 230 TPLHDAATSYELSNTIEML 248

Vertebrata (taxid: 7742)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 13/85 (15%)

Query: 7   LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPD 66
           L+ V  L+SR AD+E+ D  G+T L LAAR  +  +V  LI  GANIN   ++G      
Sbjct: 558 LDVVNLLVSRGADLEIEDAHGHTPLTLAARQGHTKVVNCLIGCGANINHTDQDG------ 611

Query: 67  CCNIFKRWRTLKRLAGGLQTRSIPA 91
                  W  L+  A G  T  + A
Sbjct: 612 -------WTALRSAAWGGHTEVVSA 629

Homo sapiens (taxid: 9606)

>sp|Q811D2|ANR26_MOUSE Ankyrin repeat domain-containing protein 26 OS=Mus musculus GN=Ankrd26 PE=1 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 8   ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           EC   LL   AD  ++D+SGNTALH A   +N ++   L+   ANI A
Sbjct: 128 ECAAILLDHGADPNVMDSSGNTALHYAVYSENTSMAAKLLAHNANIEA 175

Mus musculus (taxid: 10090)

>sp|Q28BK1|HACE1_XENTR E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 7   LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +EC+V LL R AD    D SG T LHLAAR      +  L+ + A++N    EG
Sbjct: 78  VECLVLLLKRGADPNYQDISGCTPLHLAARNGQKKCMSKLLEYNADVNICNNEG 131

E3 ubiquitin-protein ligase involved in Golgi membrane fusion and regulation of small GTPases. Acts as a regulator of Golgi membrane dynamics during the cell cycle: recruited to Golgi membrane by Rab proteins and regulates postmitotic Golgi membrane fusion. Acts by mediating ubiquitination during mitotic Golgi disassembly, ubiquitination serving as a signal for Golgi reassembly later, after cell division.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
332019149	799	85 kDa calcium-independent phospholipase	0.604	0.068	0.618	9e-12
322801683	799	hypothetical protein SINV_11178 [Solenop	0.604	0.068	0.654	1e-11
170042684	839	85 kda calcium-independent phospholipase	0.659	0.071	0.583	3e-11
157133657	824	85 kda calcium-independent phospholipase	0.659	0.072	0.583	6e-11
307166151	1280	85 kDa calcium-independent phospholipase	0.593	0.042	0.636	7e-11
156544652	794	PREDICTED: 85 kDa calcium-independent ph	0.604	0.069	0.6	1e-10
270004077	864	hypothetical protein TcasGA2_TC003390 [T	0.659	0.069	0.533	3e-10
91078692	795	PREDICTED: similar to phospholipase A2,	0.659	0.075	0.533	3e-10
312384343	488	hypothetical protein AND_02236 [Anophele	0.659	0.122	0.55	3e-10
357611492	784	putative phospholipase A2, group VI [Dan	0.659	0.076	0.583	4e-10

>gi|332019149|gb|EGI59661.1| 85 kDa calcium-independent phospholipase A2 [Acromyrmex echinatior]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           MV+  RL CV+ALLS MA V +VDN GNT LHLA   + PAIVQALI FG++++A
Sbjct: 320 MVMRKRLPCVIALLSHMASVNIVDNDGNTPLHLAVEAETPAIVQALIGFGSDVDA 374

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801683|gb|EFZ22306.1| hypothetical protein SINV_11178 [Solenopsis invicta]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           MV+  RL CVVALLS MA V +VDN GNT LHLA + +  AIVQALI FGA+I+A
Sbjct: 320 MVMRKRLPCVVALLSHMASVNIVDNEGNTPLHLAVKAETSAIVQALIGFGADIDA 374

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170042684|ref|XP_001849047.1| 85 kda calcium-independent phospholipase A2 [Culex quinquefasciatus] gi|167866174|gb|EDS29557.1| 85 kda calcium-independent phospholipase A2 [Culex quinquefasciatus]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           MV  +RLECVVALL+  AD+++VDN+GNT LH+A   K   IVQ L+VFGA+IN   +EG
Sbjct: 333 MVARDRLECVVALLAHEADIDVVDNNGNTPLHIAVEKKLVPIVQCLVVFGADINKPNKEG 392

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133657|ref|XP_001656280.1| 85 kda calcium-independent phospholipase A2 (ipla2) [Aedes aegypti] gi|108870742|gb|EAT34967.1| AAEL012835-PA [Aedes aegypti]

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 45/60 (75%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           MV  +RLECVVALL+  A++++VDNSGNT LH+A   K   IVQ L+VFGA+IN   +EG
Sbjct: 330 MVSRDRLECVVALLAHEAEIDVVDNSGNTPLHIAVEKKLIPIVQCLVVFGADINKPNKEG 389

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166151|gb|EFN60400.1| 85 kDa calcium-independent phospholipase A2 [Camponotus floridanus]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 40/55 (72%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           MV+  RL CVVALLS MA V +VDN GNT LHLA   +  AIVQ LI FGA+I+A
Sbjct: 801 MVMRKRLPCVVALLSHMASVNIVDNDGNTPLHLAVEAETLAIVQTLIGFGADIDA 855

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544652|ref|XP_001604975.1| PREDICTED: 85 kDa calcium-independent phospholipase A2-like isoform 1 [Nasonia vitripennis] gi|345480754|ref|XP_003424209.1| PREDICTED: 85 kDa calcium-independent phospholipase A2-like isoform 2 [Nasonia vitripennis]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           MV+  RLECV ALLS MA++ +VD  GN+ LHLA     P IVQ LI FGA INA
Sbjct: 320 MVIRKRLECVAALLSHMANINIVDKEGNSPLHLAVTQSTPTIVQLLIAFGAEINA 374

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004077|gb|EFA00525.1| hypothetical protein TcasGA2_TC003390 [Tribolium castaneum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           MV+ NRLECVVALLSR AD  + D  GN  +HLA +  N +I+Q LI+FG ++N L   G
Sbjct: 393 MVMRNRLECVVALLSRQADANIGDAEGNRPIHLAVKQGNISIIQCLIIFGVDLNILNNAG 452

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078692|ref|XP_971204.1| PREDICTED: similar to phospholipase A2, group VI (cytosolic, calcium-independent) [Tribolium castaneum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 41/60 (68%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           MV+ NRLECVVALLSR AD  + D  GN  +HLA +  N +I+Q LI+FG ++N L   G
Sbjct: 324 MVMRNRLECVVALLSRQADANIGDAEGNRPIHLAVKQGNISIIQCLIIFGVDLNILNNAG 383

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384343|gb|EFR29089.1| hypothetical protein AND_02236 [Anopheles darlingi]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           MV  +RLECVVALL+  A++++VDNSGNT LH+A   +   IVQ L+VFGA+IN   ++G
Sbjct: 321 MVARDRLECVVALLAHEAEIDVVDNSGNTPLHIAVEKRLLPIVQCLVVFGADINNPNKDG 380

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611492|gb|EHJ67513.1| putative phospholipase A2, group VI [Danaus plexippus]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 42/60 (70%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           MVL  RLEC +ALLSR  +  + DN GNT LHLAA+  N AIVQAL+VFGA + A  + G
Sbjct: 322 MVLRGRLECAIALLSRAVEHSIGDNEGNTPLHLAAKQTNIAIVQALVVFGAELEAKNKAG 381

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
FB|FBgn0036053	887	iPLA2-VIA "calcium-independent	0.659	0.067	0.483	4e-09
UNIPROTKB|I3L8W8	755	PLA2G6 "Uncharacterized protei	0.582	0.070	0.452	4.1e-06
UNIPROTKB|F1SKP4	812	PLA2G6 "Uncharacterized protei	0.582	0.065	0.452	4.5e-06
UNIPROTKB|E1BB89	805	PLA2G6 "Uncharacterized protei	0.582	0.065	0.433	9.4e-06
UNIPROTKB|E7EN23	667	PLA2G6 "85/88 kDa calcium-inde	0.582	0.079	0.415	1.2e-05
UNIPROTKB|E2RPF9	806	PLA2G6 "Uncharacterized protei	0.582	0.065	0.433	1.5e-05
UNIPROTKB|O60733	806	PLA2G6 "85/88 kDa calcium-inde	0.582	0.065	0.415	1.5e-05
UNIPROTKB|F5GZZ3	127	ASB8 "Ankyrin repeat and SOCS	0.527	0.377	0.469	1.9e-05
MGI|MGI:1859152	807	Pla2g6 "phospholipase A2, grou	0.582	0.065	0.452	3.2e-05
UNIPROTKB|F1PJ90	1782	ANK3 "Uncharacterized protein"	0.593	0.030	0.407	5.6e-05

FB|FBgn0036053 iPLA2-VIA "calcium-independent phospholipase A2 VIA" [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query:     1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             MV  NR ECVV LL+  A+++++D  GN ALH+A   K   IVQ L+VFG +IN   ++G
Sbjct:   330 MVARNRFECVVTLLAHDAEIDVLDKDGNAALHIAIEKKLVPIVQCLVVFGCDINLKNKDG 389

GO:0005829 "cytosol" evidence=ISS

GO:0047499 "calcium-independent phospholipase A2 activity" evidence=ISS

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|I3L8W8 PLA2G6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query:     2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             V+ NR +CV+ALL+  A  +     GNT LHLA    N  +++ALIVFGA ++
Sbjct:   325 VMRNRFDCVMALLTHGASADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVD 377

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F1SKP4 PLA2G6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query:     2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             V+ NR +CV+ALL+  A  +     GNT LHLA    N  +++ALIVFGA ++
Sbjct:   325 VMRNRFDCVMALLTHGASADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVD 377

GO:0032049 "cardiolipin biosynthetic process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E1BB89 PLA2G6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query:     2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             V+ NR +CV+ LL+  A+ +     GNT LHLA    N  +++ALIVFGA ++
Sbjct:   325 VMRNRFDCVMVLLTHGANADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVD 377

GO:0032049 "cardiolipin biosynthetic process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E7EN23 PLA2G6 "85/88 kDa calcium-independent phospholipase A2" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query:     2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             V+ NR +C + LL+  A+ +     GNT LHLA    N  +++ALIVFGA ++
Sbjct:   186 VMRNRFDCAIVLLTHGANADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVD 238

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2RPF9 PLA2G6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/53 (43%), Positives = 34/53 (64%)

Query:     2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             V+ NR +CV+ LL+  A+ +     GNT LHLA    N  +++ALIVFGA ++
Sbjct:   325 VMRNRFDCVMVLLTYGANADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVD 377

GO:0032049 "cardiolipin biosynthetic process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|O60733 PLA2G6 "85/88 kDa calcium-independent phospholipase A2" [Homo sapiens (taxid:9606)]

 Score = 113 (44.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query:     2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             V+ NR +C + LL+  A+ +     GNT LHLA    N  +++ALIVFGA ++
Sbjct:   325 VMRNRFDCAIVLLTHGANADARGEHGNTPLHLAMSKDNVEMIKALIVFGAEVD 377

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006935 "chemotaxis" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0014832 "urinary bladder smooth muscle contraction" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

GO:0035774 "positive regulation of insulin secretion involved in cellular response to glucose stimulus" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0045909 "positive regulation of vasodilation" evidence=IEA

GO:0045921 "positive regulation of exocytosis" evidence=IEA

GO:0047499 "calcium-independent phospholipase A2 activity" evidence=IEA

GO:0051967 "negative regulation of synaptic transmission, glutamatergic" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0090037 "positive regulation of protein kinase C signaling cascade" evidence=IEA

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0090238 "positive regulation of arachidonic acid secretion" evidence=IEA

GO:1901339 "regulation of store-operated calcium channel activity" evidence=IEA

GO:2000304 "positive regulation of ceramide biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032049 "cardiolipin biosynthetic process" evidence=IMP

GO:0004623 "phospholipase A2 activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0035965 "cardiolipin acyl-chain remodeling" evidence=TAS

GO:0036151 "phosphatidylcholine acyl-chain remodeling" evidence=TAS

GO:0036152 "phosphatidylethanolamine acyl-chain remodeling" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F5GZZ3 ASB8 "Ankyrin repeat and SOCS box protein 8" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 23/49 (46%), Positives = 31/49 (63%)

Query:     8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
             +CV  LL + A+V  +D    TALH AA  K+ A V+ L+ +GAN NAL
Sbjct:    67 DCVELLLEKGAEVNALDGYNRTALHYAAE-KDEACVEVLLEYGANPNAL 114

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1859152 Pla2g6 "phospholipase A2, group VI" [Mus musculus (taxid:10090)]

 Score = 110 (43.8 bits), Expect = 3.2e-05, P = 3.2e-05
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query:     2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             V+ NR +CV+ LL+  A+       GNT LHLA    N  +V+ALIVFGA ++
Sbjct:   325 VMRNRFDCVMVLLTYGANAGARGEHGNTPLHLAMSKDNMEMVKALIVFGAEVD 377

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISO

GO:0004623 "phospholipase A2 activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006935 "chemotaxis" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0007613 "memory" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0014832 "urinary bladder smooth muscle contraction" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032049 "cardiolipin biosynthetic process" evidence=ISO

GO:0034976 "response to endoplasmic reticulum stress" evidence=ISO

GO:0035774 "positive regulation of insulin secretion involved in cellular response to glucose stimulus" evidence=ISO

GO:0043008 "ATP-dependent protein binding" evidence=ISO

GO:0045909 "positive regulation of vasodilation" evidence=ISO

GO:0045921 "positive regulation of exocytosis" evidence=ISO

GO:0047499 "calcium-independent phospholipase A2 activity" evidence=ISO

GO:0051967 "negative regulation of synaptic transmission, glutamatergic" evidence=ISO

GO:0090037 "positive regulation of protein kinase C signaling cascade" evidence=ISO

GO:0090200 "positive regulation of release of cytochrome c from mitochondria" evidence=ISO

GO:0090238 "positive regulation of arachidonic acid secretion" evidence=ISO

GO:1901339 "regulation of store-operated calcium channel activity" evidence=ISO

GO:2000304 "positive regulation of ceramide biosynthetic process" evidence=ISO

UNIPROTKB|F1PJ90 ANK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 105 (42.0 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query:     7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             +E V  LL R A+V+     GNTALH+A+      +V+ L+  GAN+NA  + G
Sbjct:    87 VEVVSELLQREANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNG 140

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
smart00248	30	smart00248, ANK, ankyrin repeats	8e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.003
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 60.1 bits (146), Expect = 3e-13
 Identities = 26/59 (44%), Positives = 34/59 (57%)

Query: 2  VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            N  LE V  LL   ADV   DN G T LHLAA+  +  IV+ L+  GA++NA  ++G
Sbjct: 15 ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 57.4 bits (139), Expect = 3e-12
 Identities = 26/54 (48%), Positives = 32/54 (59%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             N  LE V  LL + ADV   D  GNT LHLAAR  N  +V+ L+  GA++NA
Sbjct: 48  AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA 101

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 28/54 (51%), Positives = 31/54 (57%)

Query: 2  VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            N  LE V  LL   ADV   D  GNTALHLAAR  N  IV+ L+  GA+IN 
Sbjct: 36 ARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.8 bits (117), Expect = 3e-09
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 2  VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            N  LE V  LL + ADV L D   +TALHLAAR  N  IV+ L+  GA++NA  ++G
Sbjct: 5  AKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
             N  L+ V  LL   ADV   D  G T LHLAA+  +  +V+ L+
Sbjct: 81  ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
           V NN  E V  LL   A+  LV+  G+T LH+A    N  I + L+  G +I  +  
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 4e-07
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 5  NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
           RLE V  LL +  D+   D  GNTALH+AA   N  +++ L+
Sbjct: 12 GRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.4 bits (98), Expect = 6e-07
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
          GNT LHLAAR  +  +V+ L+  GA++NA
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           D  G T LHLAA   +  +V+ L+  GA++NA   +G
Sbjct: 3  RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDG 40

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 5   NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           NR+     LLS    + + D  G T LH A    NP  V+ L+  GAN N 
Sbjct: 173 NRVNY---LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 10/58 (17%)

Query: 13  LLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN 69
           LLS  AD+ + D + GNTALH A   K+  + + L+ +GAN+N          PD  N
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI---------PDKTN 201

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 2   VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKN--PAIVQALIVFGANINAL 56
           + N     V+ LL +  ADV   D  G T LH+   G N  P +++ L+  GA++NAL
Sbjct: 91  LYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL 148

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 3e-05
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           D+   D +GNT LHLAA+     +VQ L+  G ++N    +G
Sbjct: 7  IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDG 49

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.0 bits (84), Expect = 8e-05
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
          G T LHLAA   N  +V+ L+  GA+INA
Sbjct: 2  GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   NRLECVVALLSRMADVELVDNSGNTALHLAARGKNP--AIVQALIVFGANINALCR 58
           N    V  LL   A+V + ++ G   LHL          I++ LI  G +INA  R
Sbjct: 119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
          GNT LHLAAR  N  +V+ L+  GA+INA
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 36.3 bits (83), Expect = 6e-04
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNP-----AIVQALIVFGANINALCR 58
               + V  LL+  ADV   D  G+T LHLAA   NP      + + L+  GA+++    
Sbjct: 83  KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL 142

Query: 59  E 59
            
Sbjct: 143 R 143

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
           +    LE +  L    ADV + D++G   +H+A +     I++ L+  GA  N
Sbjct: 132 IKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 13  LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
           LLS  A+V + D + N+ LH A +  N  IV  L+  GA+ +A  + G 
Sbjct: 187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGN 235

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 36.0 bits (83), Expect = 9e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 13  LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           LL+  AD    D  G T LH+A    +  +V+ L+ FGA+   L ++G
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGK--NPAIVQALIVFGANINAL 56
             L +  E V  LL   A+V   DN+G T L  A   K  + +IV+ L+  GAN+N  
Sbjct: 80  YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK 137

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAAR---GKNPAIVQALIVFGANINA 55
          N  +E V  LL+  ADV      G T LHL       K   IV+ L+  GA++NA
Sbjct: 24 NVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Length = 471

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)

Query: 27  GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKR 73
           G TALHLAA  +N  IV+ L+  GA++ A           C + F +
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARA---------CGDFFVK 165

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 16/44 (36%), Positives = 20/44 (45%)

Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
            N  ++ V  LL   AD  L+D  G T L LA       +VQ L
Sbjct: 124 ANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 10  VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
           V+ LL     +   +  G T LH AA   NP   + LI  GA+INA+  +G 
Sbjct: 240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGN 291

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAI-VQALIVFGANINA 55
           + N +  +  LL   AD+E +     TALH A  G NP + V+ LI  GAN+N+
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS 437

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG4412|consensus	226		99.79
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
KOG0509|consensus	600		99.68
KOG4412|consensus	226		99.67
KOG0508|consensus	615		99.67
KOG0512|consensus	228		99.66
PHA02795	437	ankyrin-like protein; Provisional	99.66
KOG0509|consensus	600		99.66
KOG0195|consensus	448		99.64
PHA02946	446	ankyin-like protein; Provisional	99.64
PHA02875	413	ankyrin repeat protein; Provisional	99.63
PHA02878	477	ankyrin repeat protein; Provisional	99.63
PHA02743	166	Viral ankyrin protein; Provisional	99.63
PHA02791	284	ankyrin-like protein; Provisional	99.63
PHA02736	154	Viral ankyrin protein; Provisional	99.63
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.62
PHA02884	300	ankyrin repeat protein; Provisional	99.61
PHA02741	169	hypothetical protein; Provisional	99.61
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.6
KOG4214|consensus	117		99.6
PHA02884	300	ankyrin repeat protein; Provisional	99.6
PHA02791	284	ankyrin-like protein; Provisional	99.6
PHA03100	480	ankyrin repeat protein; Provisional	99.59
PHA02874	434	ankyrin repeat protein; Provisional	99.59
KOG4177|consensus	1143		99.58
KOG0514|consensus	452		99.57
KOG0512|consensus	228		99.56
KOG0195|consensus	448		99.56
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.55
PHA02743	166	Viral ankyrin protein; Provisional	99.55
KOG0510|consensus	929		99.55
PHA03095	471	ankyrin-like protein; Provisional	99.55
PHA02741	169	hypothetical protein; Provisional	99.54
PHA02859	209	ankyrin repeat protein; Provisional	99.54
PHA02875	413	ankyrin repeat protein; Provisional	99.54
PHA02859	209	ankyrin repeat protein; Provisional	99.54
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.52
PHA02876	682	ankyrin repeat protein; Provisional	99.52
PHA03095	471	ankyrin-like protein; Provisional	99.52
PHA02874	434	ankyrin repeat protein; Provisional	99.51
PHA03100	480	ankyrin repeat protein; Provisional	99.51
KOG0502|consensus	296		99.51
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.51
KOG0502|consensus	296		99.51
KOG0515|consensus	752		99.5
PHA02989	494	ankyrin repeat protein; Provisional	99.49
PHA02946	446	ankyin-like protein; Provisional	99.49
PHA02989	494	ankyrin repeat protein; Provisional	99.49
PHA02878	477	ankyrin repeat protein; Provisional	99.49
PHA02798	489	ankyrin-like protein; Provisional	99.48
PHA02798	489	ankyrin-like protein; Provisional	99.47
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.46
KOG0508|consensus	615		99.45
KOG4214|consensus	117		99.44
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.44
PHA02917	661	ankyrin-like protein; Provisional	99.42
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
PHA02917	661	ankyrin-like protein; Provisional	99.42
PHA02876	682	ankyrin repeat protein; Provisional	99.41
KOG4177|consensus	1143		99.41
PHA02730	672	ankyrin-like protein; Provisional	99.37
PHA02730	672	ankyrin-like protein; Provisional	99.36
KOG0514|consensus	452		99.3
KOG0505|consensus	527		99.3
PHA02792	631	ankyrin-like protein; Provisional	99.3
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.29
PHA02792	631	ankyrin-like protein; Provisional	99.29
PHA02795	437	ankyrin-like protein; Provisional	99.27
KOG0510|consensus	929		99.27
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.27
KOG0505|consensus	527		99.26
KOG1710|consensus	396		99.26
KOG3676|consensus	782		99.26
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.25
KOG0818|consensus	669		99.25
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.21
KOG0515|consensus	752		99.21
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.16
KOG0783|consensus	1267		99.15
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.13
PF13606	30	Ank_3: Ankyrin repeat	99.12
KOG0506|consensus	622		99.11
KOG1710|consensus	396		99.09
KOG0507|consensus	854		99.09
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.03
KOG0511|consensus	516		98.97
KOG3676|consensus	782		98.96
PHA02736	154	Viral ankyrin protein; Provisional	98.96
KOG0507|consensus	854		98.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.91
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.77
KOG0522|consensus	560		98.77
KOG0705|consensus	749		98.69
KOG4369|consensus	2131		98.67
KOG0521|consensus	785		98.67
KOG2505|consensus	591		98.48
KOG2384|consensus	223		98.47
KOG0705|consensus	749		98.31
KOG4369|consensus	2131		98.26
KOG0782|consensus	1004		98.17
KOG0783|consensus	1267		98.14
KOG0818|consensus	669		97.83
KOG0506|consensus	622		97.83
PF13606	30	Ank_3: Ankyrin repeat	97.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.71
KOG0522|consensus	560		97.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.61
KOG0782|consensus	1004		97.6
KOG0511|consensus	516		97.5
KOG0520|consensus	975		97.35
KOG0520|consensus	975		97.26
KOG0521|consensus	785		97.11
KOG3609|consensus	822		97.11
KOG2384|consensus	223		96.56
KOG3609|consensus	822		95.67
KOG2505|consensus	591		94.36
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.02
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.54

>KOG4412|consensus

Probab=99.79  E-value=7.6e-19  Score=94.73  Aligned_cols=82  Identities=27%  Similarity=0.234  Sum_probs=70.1

Q ss_pred             CccCCcHHHHHHHHh-cCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCChHHHHHHhhhhHHHHH
Q psy12915          1 MVLNNRLECVVALLS-RMADVELVDNSGNTALHLAARGKNPAIVQALIVF-GANINALCREGTFQGPDCCNIFKRWRTLK   78 (91)
Q Consensus         1 a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~tpl~~a~~~~~~~~~~~   78 (91)
                      ||.+|+.+++.+|++ .+..++..|..||||||+|+..|+.++++.|+.+ |+++|..++.|.||||+|+. -++++..+
T Consensus        45 a~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag-K~r~eIaq  123 (226)
T KOG4412|consen   45 ACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG-KGRLEIAQ  123 (226)
T ss_pred             eeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc-CChhhHHH
Confidence            578999999999995 6678888889999999999999999999999987 99999999999999999996 44455555


Q ss_pred             HHhcC
Q psy12915         79 RLAGG   83 (91)
Q Consensus        79 ~~~~~   83 (91)
                      ++.++
T Consensus       124 lLle~  128 (226)
T KOG4412|consen  124 LLLEK  128 (226)
T ss_pred             HHHhc
Confidence            55554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.77  E-value=5.7e-19  Score=80.09  Aligned_cols=55  Identities=38%  Similarity=0.404  Sum_probs=33.3

Q ss_pred             HHhcC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHH
Q psy12915         13 LLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDC   67 (91)
Q Consensus        13 L~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a   67 (91)
                      |+++| .+++.+|..|.||||+|+..|+.+++++|+..|++++.+|.+|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46677 78999999999999999999999999999999999999999999999987

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=7.4e-17  Score=79.27  Aligned_cols=77  Identities=35%  Similarity=0.378  Sum_probs=65.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+..+.+++.    |.+|+|+|+..|+.+++++|++.|++++.++..|.||+++|+. .+..+.+..+
T Consensus         4 A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~~~~L   78 (89)
T PF12796_consen    4 AAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAE-NGNLEIVKLL   78 (89)
T ss_dssp             HHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHH-TTHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            5678999999999998887765    8899999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      .+
T Consensus        79 l~   80 (89)
T PF12796_consen   79 LE   80 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0509|consensus

Probab=99.68  E-value=1.6e-16  Score=98.03  Aligned_cols=68  Identities=32%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      |+++|++.+++.|+++|++++..|..|.+++|.|++.++.-.+.+++..|++++.+|.+|+|||+||+
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA  186 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666

>KOG4412|consensus

Probab=99.67  E-value=2.3e-16  Score=85.25  Aligned_cols=66  Identities=29%  Similarity=0.281  Sum_probs=36.7

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDC   67 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a   67 (91)
                      +..|..+++++|+.+|+.++.+|..+.||||.|+.-|..+++++|+..|+.+|..|.+|+||||.|
T Consensus       114 agK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             hcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555555555555

>KOG0508|consensus

Probab=99.67  E-value=7.4e-17  Score=97.40  Aligned_cols=81  Identities=27%  Similarity=0.326  Sum_probs=72.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      ||..|+.+++++|+.+|+++++.|+.|.|.||+|+..|+.+++++|++.|+++|.++..|.|+||.|+. .+..+.+..+
T Consensus       124 ACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caE-sG~vdivq~L  202 (615)
T KOG0508|consen  124 ACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAE-SGSVDIVQLL  202 (615)
T ss_pred             HHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhh-cccHHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999999997 4444555555


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      +.
T Consensus       203 l~  204 (615)
T KOG0508|consen  203 LK  204 (615)
T ss_pred             Hh
Confidence            44

>KOG0512|consensus

Probab=99.66  E-value=2.2e-16  Score=84.94  Aligned_cols=69  Identities=28%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |++.||.++++.|+..|++.+.+...||||||.||...+.+++..|+..|+++|.......||||+|+.
T Consensus       104 AaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~  172 (228)
T KOG0512|consen  104 AAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG  172 (228)
T ss_pred             HHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhc
Confidence            567888888888888888888888888888888888888888888888888888888888888888886

>PHA02795 ankyrin-like protein; Provisional

Probab=99.66  E-value=7.6e-16  Score=93.35  Aligned_cols=67  Identities=24%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..++.++++.|+.+|++++.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+.
T Consensus       197 ~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~  263 (437)
T PHA02795        197 EPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVD  263 (437)
T ss_pred             hcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999997

>KOG0509|consensus

Probab=99.66  E-value=5.1e-16  Score=95.85  Aligned_cols=76  Identities=29%  Similarity=0.338  Sum_probs=67.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTL   77 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~   77 (91)
                      |+.+++.+++++|+++|+++|..+ ..+.||||||+.+|+..++..|++.||+++.+|.+|.+|+|+|+. +.+..-+
T Consensus        85 AAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~-~~~~~~v  161 (600)
T KOG0509|consen   85 AAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQ-FGHTALV  161 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHH-hCchHHH
Confidence            567889999999999999999987 568899999999999999999999999999999999999999997 4443333

>KOG0195|consensus

Probab=99.64  E-value=5.1e-16  Score=89.44  Aligned_cols=74  Identities=30%  Similarity=0.308  Sum_probs=66.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRT   76 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~   76 (91)
                      |+..|+..+++.|+.+|+.++..+....+|||+|+.+|+.++++.|++..+++|..+..|.||||+||.  +++..
T Consensus        41 aakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacf--wgydq  114 (448)
T KOG0195|consen   41 AAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACF--WGYDQ  114 (448)
T ss_pred             hhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhh--hcHHH
Confidence            467899999999999999999988888899999999999999999999999999999999999999994  55543

>PHA02946 ankyin-like protein; Provisional

Probab=99.64  E-value=1.9e-15  Score=92.49  Aligned_cols=66  Identities=27%  Similarity=0.232  Sum_probs=62.1

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..+.++++.|+.+|++++.+|..|.||||+|+..++.+++++|++.|++++.+|.+|.||||+|+.
T Consensus        49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~  114 (446)
T PHA02946         49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG  114 (446)
T ss_pred             CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            345689999999999999999999999999999999999999999999999999999999999986

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.63  E-value=3e-15  Score=90.69  Aligned_cols=80  Identities=19%  Similarity=0.082  Sum_probs=64.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+. .+..+.+..+
T Consensus       109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~-~g~~eiv~~L  187 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA-KGDIAICKML  187 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            356678888888888888888888888899999998888999999988888888888889999999886 3333333344


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       188 l  188 (413)
T PHA02875        188 L  188 (413)
T ss_pred             H
Confidence            3

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.63  E-value=3.2e-15  Score=92.09  Aligned_cols=82  Identities=28%  Similarity=0.251  Sum_probs=65.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+..|++++..|..|.||||+|+..++.++++.|++.|++++.+|..|.||||+|+........+..+
T Consensus       175 A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~L  254 (477)
T PHA02878        175 ATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLL  254 (477)
T ss_pred             HHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHH
Confidence            45678888889998888888888888889999998888888999998889999888888999999888632334444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus       255 l~  256 (477)
T PHA02878        255 LE  256 (477)
T ss_pred             HH
Confidence            43

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.63  E-value=3.4e-15  Score=81.00  Aligned_cols=61  Identities=26%  Similarity=0.286  Sum_probs=49.6

Q ss_pred             HHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHH
Q psy12915          9 CVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         9 ~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .+++|+..|++++.++ ..|.||||+|+..++.+++++|+. .|++++.++.+|.||+++|+.
T Consensus        75 ~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~  137 (166)
T PHA02743         75 KIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYK  137 (166)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHH
Confidence            4778888888888876 478888888888888888888885 688888888888888888885

>PHA02791 ankyrin-like protein; Provisional

Probab=99.63  E-value=2.7e-15  Score=87.29  Aligned_cols=68  Identities=21%  Similarity=0.075  Sum_probs=47.8

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCC-ChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT-FQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-tpl~~a~~   69 (91)
                      +..|+.++++.|+..|++++.+|..|+||||+|+..++.++++.|+..|++++.++..|. |||++|+.
T Consensus        69 a~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~  137 (284)
T PHA02791         69 ATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM  137 (284)
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHH
Confidence            455667777777777777777777777777777777777777777777777766666663 67777764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.63  E-value=8.8e-15  Score=78.41  Aligned_cols=68  Identities=24%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             ccCCcH---HHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRL---ECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~---~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.   ++++.|+..|++++.++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||+++|+.
T Consensus        63 ~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~  135 (154)
T PHA02736         63 SNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE  135 (154)
T ss_pred             cccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHH
Confidence            445554   46889999999999987 489999999999999999999998 599999999999999999996

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.62  E-value=2.9e-15  Score=97.17  Aligned_cols=69  Identities=20%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.++++.|+..|++++..|..|.||||+|+..|+.++++.|+..|++++.+|.+|.||||+|+.
T Consensus       532 Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999996

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.61  E-value=4.1e-15  Score=86.87  Aligned_cols=68  Identities=22%  Similarity=0.104  Sum_probs=44.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccC----CCCChHHHHHHHcCCHHHHHHHHhcCCCcccc-ccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVD----NSGNTALHLAARGKNPAIVQALIVFGANINAL-CREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~----~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~-~~~g~tpl~~a~~   69 (91)
                      +.+|+.++++.|+++|++++.++    ..|.||||+|+..++.+++++|++.|++++.. +..|.||||+|+.
T Consensus        41 ~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         41 IKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             HHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            34566667777777776666642    35667777776666777777777667776664 3456677776664

>PHA02741 hypothetical protein; Provisional

Probab=99.61  E-value=6.8e-15  Score=80.00  Aligned_cols=68  Identities=21%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             ccCCc----HHHHHHHHhcCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNR----LECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~----~~~~~~L~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+    .+++++|+..|++++.++. .|+||||+|+..++.+++++|+. .|++++..|.+|.||++.|..
T Consensus        68 ~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~  141 (169)
T PHA02741         68 AEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID  141 (169)
T ss_pred             HHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH
Confidence            44566    5889999999999999875 89999999999999999999997 599999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.60  E-value=5.7e-15  Score=94.00  Aligned_cols=69  Identities=25%  Similarity=0.280  Sum_probs=65.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+.++.|+..|++++.+|..|+||||+|+..++.+++++|+..|++++.+|..|.||||+|+.
T Consensus        89 aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         89 LAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999996

>KOG4214|consensus

Probab=99.60  E-value=1e-14  Score=71.27  Aligned_cols=85  Identities=26%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhH-HHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW-RTLKRL   80 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~-~~~~~~   80 (91)
                      +.+|.++-++..+..|.+++.. ..|++|||+|+..|+.+++++|++.|++++.+|..|.|||--|..  +++ ..+.++
T Consensus        10 vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvw--EGH~~cVklL   86 (117)
T KOG4214|consen   10 VKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVW--EGHRDCVKLL   86 (117)
T ss_pred             hccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHH--HhhHHHHHHH
Confidence            5678899999999999877764 578999999999999999999999999999999999999999985  554 455555


Q ss_pred             hcCCCCCCC
Q psy12915         81 AGGLQTRSI   89 (91)
Q Consensus        81 ~~~~~~~~i   89 (91)
                      ++...++++
T Consensus        87 L~~GAdrt~   95 (117)
T KOG4214|consen   87 LQNGADRTI   95 (117)
T ss_pred             HHcCcccce
Confidence            555444443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.60  E-value=9e-15  Score=85.46  Aligned_cols=69  Identities=16%  Similarity=0.078  Sum_probs=64.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..++.+++++|+.+|++++..+ ..|.||||+|+..++.++++.|+..|++++.++..|.||+++|+.
T Consensus        77 Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884         77 AIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             HHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            456789999999999999999864 579999999999999999999999999999999999999999986

>PHA02791 ankyrin-like protein; Provisional

Probab=99.60  E-value=9.4e-15  Score=85.02  Aligned_cols=79  Identities=22%  Similarity=0.219  Sum_probs=66.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+..|++++..+  +.||||+|+..++.++++.|+..|++++.+|..|.||||+|+. ......+..+
T Consensus        37 Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~-~g~~eivk~L  113 (284)
T PHA02791         37 AIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD-SGNMQTVKLF  113 (284)
T ss_pred             HHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            467899999999999999887754  6899999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      .+
T Consensus       114 l~  115 (284)
T PHA02791        114 VK  115 (284)
T ss_pred             HH
Confidence            43

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.59  E-value=1.3e-14  Score=89.25  Aligned_cols=79  Identities=30%  Similarity=0.261  Sum_probs=68.8

Q ss_pred             ccCCc--HHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          2 VLNNR--LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         2 ~~~~~--~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      +..++  .+++++|+..|++++.+|..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+. ......+..
T Consensus       223 ~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~-~~~~~iv~~  301 (480)
T PHA03100        223 ACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL-NNNKEIFKL  301 (480)
T ss_pred             HHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH-hCCHHHHHH
Confidence            45667  899999999999999999999999999999999999999999999999999999999999996 333334433


Q ss_pred             Hh
Q psy12915         80 LA   81 (91)
Q Consensus        80 ~~   81 (91)
                      ++
T Consensus       302 Ll  303 (480)
T PHA03100        302 LL  303 (480)
T ss_pred             HH
Confidence            33

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.59  E-value=1.3e-14  Score=88.56  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=49.9

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++++.+|..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus       132 ~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        132 IKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE  199 (434)
T ss_pred             HHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777775

>KOG4177|consensus

Probab=99.58  E-value=4.9e-15  Score=97.22  Aligned_cols=69  Identities=30%  Similarity=0.285  Sum_probs=65.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+.+|+...|++|+.+|++++.++..|+||||.|+..|+.+|+..|++.|+++|..+..|.||+++|.+
T Consensus       547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~  615 (1143)
T KOG4177|consen  547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVR  615 (1143)
T ss_pred             HHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999997

>KOG0514|consensus

Probab=99.57  E-value=1.4e-14  Score=85.41  Aligned_cols=69  Identities=30%  Similarity=0.323  Sum_probs=66.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+.+|+.++++.|+..|+++|++|..|.|+|+.|+.+|+.++++.|+. .++++.+.|.+|.|+|.+|..
T Consensus       347 AVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  347 AVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             hhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHh
Confidence            578999999999999999999999999999999999999999999998 589999999999999999997

>KOG0512|consensus

Probab=99.56  E-value=1.4e-14  Score=78.04  Aligned_cols=79  Identities=34%  Similarity=0.386  Sum_probs=67.1

Q ss_pred             ccCCcHHHHHHHHhcCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMAD-VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      +..+.+..|+.|++..++ ++.+|..++||||.|+..|+..++..|+..|++++.+...|+||||-||. -...+..-++
T Consensus        71 ae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAck-WnN~~va~~L  149 (228)
T KOG0512|consen   71 AEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACK-WNNFEVAGRL  149 (228)
T ss_pred             HhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhc-ccchhHHHHH
Confidence            455677888999987775 88899999999999999999999999999999999999999999999997 3334444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       150 L  150 (228)
T KOG0512|consen  150 L  150 (228)
T ss_pred             H
Confidence            4

>KOG0195|consensus

Probab=99.56  E-value=1.9e-14  Score=83.05  Aligned_cols=71  Identities=31%  Similarity=0.350  Sum_probs=67.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIF   71 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~   71 (91)
                      |+.+||.++++.|+++.+++++.+..|++||||||..|.-++.+-|+..|+.+++.+.+|.||+..|....
T Consensus        74 aaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l  144 (448)
T KOG0195|consen   74 AAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPML  144 (448)
T ss_pred             hhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999988633

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.55  E-value=3.2e-14  Score=63.94  Aligned_cols=50  Identities=34%  Similarity=0.361  Sum_probs=38.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHH
Q psy12915         27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLK   78 (91)
Q Consensus        27 ~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~   78 (91)
                      |+||+|+|+..|+.+++++|++.|++++..|.+|.||+|+|+.  .++..+.
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~--~g~~~~~   50 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAK--NGNIDIV   50 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHH--TT-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--ccCHHHH
Confidence            6799999999999999999999999999999999999999996  4444433

...

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.55  E-value=2.7e-14  Score=77.52  Aligned_cols=79  Identities=18%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             ccCCcH----HHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHH---HHHHHhcCCCccccc-cCCCChHHHHHHhhhh
Q psy12915          2 VLNNRL----ECVVALLSRMADVELVDNSGNTALHLAARGKNPAI---VQALIVFGANINALC-REGTFQGPDCCNIFKR   73 (91)
Q Consensus         2 ~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~ll~~g~~~~~~~-~~g~tpl~~a~~~~~~   73 (91)
                      +..|+.    +++++|+..|..++..|..|+||||+|+..++.+.   +++|+..|++++.++ ..|.||||+|+. ...
T Consensus        28 ~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~-~g~  106 (166)
T PHA02743         28 CRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAAS-TKN  106 (166)
T ss_pred             HHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHH-hCC
Confidence            456666    56667788888888889999999999999988654   789999999999998 589999999997 333


Q ss_pred             HHHHHHHh
Q psy12915         74 WRTLKRLA   81 (91)
Q Consensus        74 ~~~~~~~~   81 (91)
                      ...+..+.
T Consensus       107 ~~iv~~Ll  114 (166)
T PHA02743        107 YELAEWLC  114 (166)
T ss_pred             HHHHHHHH
Confidence            44444444

>KOG0510|consensus

Probab=99.55  E-value=5.5e-14  Score=89.37  Aligned_cols=90  Identities=29%  Similarity=0.322  Sum_probs=76.5

Q ss_pred             CccCCcHHHHHHHHhcCCCC---------------cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHH
Q psy12915          1 MVLNNRLECVVALLSRMADV---------------ELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGP   65 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~---------------~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~   65 (91)
                      |+..|++++++.+++.|...               +..|+.|.||||+|+..|.+++++.|+..|++++.++.++.||+|
T Consensus       232 Ave~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH  311 (929)
T KOG0510|consen  232 AVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLH  311 (929)
T ss_pred             hhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchH
Confidence            56789999999999987542               223678899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHhcCCCCCCCCC
Q psy12915         66 DCCNIFKRWRTLKRLAGGLQTRSIPA   91 (91)
Q Consensus        66 ~a~~~~~~~~~~~~~~~~~~~~~i~~   91 (91)
                      .|+. +++...+.++++...++++|+
T Consensus       312 ~AA~-yg~~ntv~rLL~~~~~rllne  336 (929)
T KOG0510|consen  312 FAAI-YGRINTVERLLQESDTRLLNE  336 (929)
T ss_pred             HHHH-cccHHHHHHHHhCcCcccccc
Confidence            9998 777888888888777776653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.55  E-value=5e-14  Score=86.45  Aligned_cols=62  Identities=31%  Similarity=0.371  Sum_probs=54.2

Q ss_pred             HHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         8 ~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..++.|+..|++++.+|..|+||||+|+..|+.+++++|+..|++++..+..|.||++.|+.
T Consensus       238 ~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        238 SLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            46677788888888888889999999999999999999999999999999999999999886

>PHA02741 hypothetical protein; Provisional

Probab=99.54  E-value=4.9e-14  Score=76.63  Aligned_cols=80  Identities=21%  Similarity=0.284  Sum_probs=65.1

Q ss_pred             CccCCcHHHHHHHHh------cCCCCcccCCCCChHHHHHHHcCC----HHHHHHHHhcCCCcccccc-CCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLS------RMADVELVDNSGNTALHLAARGKN----PAIVQALIVFGANINALCR-EGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~------~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~g~~~~~~~~-~g~tpl~~a~~   69 (91)
                      |+..|+.++++.|+.      .|++++.+|..|.||||+|+..++    .+++++|+..|++++.++. .|.||||+|+.
T Consensus        28 Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~  107 (169)
T PHA02741         28 AARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAH  107 (169)
T ss_pred             HHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHH
Confidence            467899999998753      357788889999999999999998    5788999999999999985 99999999997


Q ss_pred             hhhhHHHHHHHh
Q psy12915         70 IFKRWRTLKRLA   81 (91)
Q Consensus        70 ~~~~~~~~~~~~   81 (91)
                       ......+..++
T Consensus       108 -~~~~~iv~~Ll  118 (169)
T PHA02741        108 -RRDHDLAEWLC  118 (169)
T ss_pred             -cCCHHHHHHHH
Confidence             34444444444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.54  E-value=9.8e-14  Score=77.76  Aligned_cols=65  Identities=23%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             CcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          5 NRLECVVALLSRMADVELVD-NSGNTALHLAARG---KNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ++.+++++|+++|++++.++ ..|.||||+++..   ++.+++++|++.|++++.+|..|.||||+|+.
T Consensus        64 ~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~  132 (209)
T PHA02859         64 VNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMC  132 (209)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            35666666666666666654 3566666665432   34666666666666666666666666666553

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.54  E-value=5e-14  Score=85.42  Aligned_cols=80  Identities=15%  Similarity=0.136  Sum_probs=65.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+..|++++..+..|.||||+|+..++.+++++|+..|++++..+..+.||||.|+. .+....+..+
T Consensus         9 A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~-~g~~~~v~~L   87 (413)
T PHA02875          9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVE-EGDVKAVEEL   87 (413)
T ss_pred             HHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHH-CCCHHHHHHH
Confidence            467889999999999999999888889999999999999999999999999888887777788887776 3334444333


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus        88 l   88 (413)
T PHA02875         88 L   88 (413)
T ss_pred             H
Confidence            3

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.54  E-value=2.1e-13  Score=76.41  Aligned_cols=78  Identities=13%  Similarity=0.062  Sum_probs=63.5

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCChHHHHHHH--cCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          5 NRLECVVALLSRMADVELVDNSGNTALHLAAR--GKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      ++.+++++|+.+|++++.+|..|.||||+++.  .++.+++++|+..|++++.+|..|.||+|.++......+.+..+.+
T Consensus       101 ~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~  180 (209)
T PHA02859        101 VEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS  180 (209)
T ss_pred             ccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH
Confidence            56899999999999999999999999999865  4679999999999999999999999999965442334444444443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.52  E-value=1.2e-13  Score=89.79  Aligned_cols=80  Identities=21%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHH-------------------------------cCCHHHHHHHHhc
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAAR-------------------------------GKNPAIVQALIVF   49 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~-------------------------------~~~~~~~~~ll~~   49 (91)
                      |+..|+.++++.|+.+|++++.+|..|+||||+|+.                               .|+.++++.|++.
T Consensus       565 Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~  644 (823)
T PLN03192        565 AASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQ  644 (823)
T ss_pred             HHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHC
Confidence            567899999999999999999999999999886554                               4555666777888


Q ss_pred             CCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915         50 GANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus        50 g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      |++++.+|..|.||||+|+. .+....+..+.
T Consensus       645 Gadin~~d~~G~TpLh~A~~-~g~~~iv~~Ll  675 (823)
T PLN03192        645 GLNVDSEDHQGATALQVAMA-EDHVDMVRLLI  675 (823)
T ss_pred             CCCCCCCCCCCCCHHHHHHH-CCcHHHHHHHH
Confidence            99999999999999999996 33333343343

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.52  E-value=8.7e-14  Score=88.85  Aligned_cols=68  Identities=25%  Similarity=0.270  Sum_probs=64.9

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..++.+++++|+..|++++.+|..|+||||+|+..|+.+++++|++.|++++..+..|.||++.|..
T Consensus       153 i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~  220 (682)
T PHA02876        153 IQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVD  220 (682)
T ss_pred             HHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999996

>PHA03095 ankyrin-like protein; Provisional

Probab=99.52  E-value=2.3e-13  Score=83.59  Aligned_cols=63  Identities=29%  Similarity=0.247  Sum_probs=38.7

Q ss_pred             cHHHHHHHHhcCCCCcccCCCCChHHHHHHHcC-CHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915          6 RLECVVALLSRMADVELVDNSGNTALHLAARGK-NPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus         6 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      +.++++.|++.|++++.++..|.||||+|+..+ ..+++++|++.|++++..+..|.||||+|+
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~  125 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL  125 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            555666666666666665556666666666665 356666666666666666666666666665

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.51  E-value=1.3e-13  Score=84.15  Aligned_cols=80  Identities=24%  Similarity=0.297  Sum_probs=66.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..++.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||.|+.  .....+..+
T Consensus       164 A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~--~~~~~i~~L  241 (434)
T PHA02874        164 AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HNRSAIELL  241 (434)
T ss_pred             HHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH--CChHHHHHH
Confidence            456788999999999999999989999999999999999999999999999988888888888888885  333444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ..
T Consensus       242 l~  243 (434)
T PHA02874        242 IN  243 (434)
T ss_pred             Hc
Confidence            43

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.51  E-value=2e-13  Score=84.02  Aligned_cols=67  Identities=28%  Similarity=0.289  Sum_probs=48.9

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGK--NPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..|+.+++++|+.+|++++..+..|.||||+|+..+  +.+++++|++.|++++..+..|.||||+|+.
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~  185 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVE  185 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence            566777777777777777777777777777777777  6777777777777777777777777777775

>KOG0502|consensus

Probab=99.51  E-value=4e-14  Score=78.86  Aligned_cols=73  Identities=26%  Similarity=0.277  Sum_probs=54.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKR   73 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~   73 (91)
                      |+..|+.++++.|+.++.++|.-|+.|.|||-+|+..++.+|++.|+..|++++..+..|.+++..|.++.++
T Consensus       200 At~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  200 ATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             HhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            3556777777777777777777777777777777777777777777777777777777777777777764444

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.51  E-value=4.1e-14  Score=69.46  Aligned_cols=57  Identities=42%  Similarity=0.493  Sum_probs=51.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC   57 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~   57 (91)
                      |+..|+.+++++|++.|++++.+|..|+||+|+|+..++.+++++|++.|++++.+|
T Consensus        33 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   33 AAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            467899999999999999999999999999999999999999999999999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0502|consensus

Probab=99.51  E-value=3.4e-14  Score=79.14  Aligned_cols=81  Identities=21%  Similarity=0.208  Sum_probs=71.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+.+|++..+++|+..|++++....+..++|++|+..|..++++.|+.++.++|..|.+|-|||-+|++ .+.-+.+..+
T Consensus       167 Aaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvr-gnhvkcve~L  245 (296)
T KOG0502|consen  167 AAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVR-GNHVKCVESL  245 (296)
T ss_pred             HHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeec-CChHHHHHHH
Confidence            578999999999999999999988888999999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      +.
T Consensus       246 l~  247 (296)
T KOG0502|consen  246 LN  247 (296)
T ss_pred             Hh
Confidence            44

>KOG0515|consensus

Probab=99.50  E-value=1.1e-13  Score=84.97  Aligned_cols=83  Identities=27%  Similarity=0.251  Sum_probs=70.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|-+++++..+..--++...+..|.|+||-|+..|+.++|++|+.+|+++|..|.+|+||||.|+....-.....+.
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLV  636 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLV  636 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHH
Confidence            45678889999998888888888899999999999999999999999999999999999999999999744444444444


Q ss_pred             hcC
Q psy12915         81 AGG   83 (91)
Q Consensus        81 ~~~   83 (91)
                      ..|
T Consensus       637 e~G  639 (752)
T KOG0515|consen  637 ESG  639 (752)
T ss_pred             hcc
Confidence            433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.49  E-value=2.7e-13  Score=84.04  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             HHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         7 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      .+++++|+ .+++++.+|..|+||||+|+..++.++++.|++.|++++.++..|.|||++|+. .+....+..++
T Consensus       237 ~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~-~~~~~iv~~LL  309 (494)
T PHA02989        237 FKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIK-HGNIDMLNRIL  309 (494)
T ss_pred             hHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHH-cCCHHHHHHHH
Confidence            34444433 346667777889999999999999999999999999999999999999999997 33333333333

>PHA02946 ankyin-like protein; Provisional

Probab=99.49  E-value=3.2e-13  Score=82.86  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          5 NRLECVVALLSRMADVELVDNSGNTALHLAARGK--NPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ++.+.+++|+..|++++.+|..|.||||+|+..+  +.++++.|+. |++++.+|..|.||||+|+.
T Consensus       186 ~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~  251 (446)
T PHA02946        186 PKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIK  251 (446)
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH
Confidence            3456677777777777777777777777777664  5667776664 67777777777777777775

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.49  E-value=2.6e-13  Score=84.11  Aligned_cols=66  Identities=20%  Similarity=0.119  Sum_probs=54.6

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCc-cccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARG---KNPAIVQALIVFGANI-NALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~g~~~-~~~~~~g~tpl~~a~~   69 (91)
                      .++.++++.|+++|++++.++..|.||||.|+..   ++.+++++|++.|+++ +..+..|.||||+|+.
T Consensus        85 ~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~  154 (494)
T PHA02989         85 NKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE  154 (494)
T ss_pred             hhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH
Confidence            3456788888999999888888889998877543   6788889999999998 7888889999998875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.49  E-value=6e-13  Score=82.15  Aligned_cols=75  Identities=28%  Similarity=0.328  Sum_probs=65.0

Q ss_pred             HHHHHHHHhcCCCCcccCCC-CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          7 LECVVALLSRMADVELVDNS-GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         7 ~~~~~~L~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      .++++.|+++|++++..+.. |.||||+|+..++.++++.|+..|++++..+..|.||||.|+. ......+..+.+
T Consensus       147 ~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~-~~~~~iv~~Ll~  222 (477)
T PHA02878        147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK-HYNKPIVHILLE  222 (477)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-hCCHHHHHHHHH
Confidence            45899999999999999888 9999999999999999999999999999999999999999997 343444444443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.48  E-value=3.1e-13  Score=83.68  Aligned_cols=65  Identities=23%  Similarity=0.216  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcC---CHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          5 NRLECVVALLSRMADVELVDNSGNTALHLAARGK---NPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ++.+++++|+.+|++++..|..|.||||+|+..+   +.+++++|++.|++++..|..|.||||+|+.
T Consensus        87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~  154 (489)
T PHA02798         87 HMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ  154 (489)
T ss_pred             hHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHH
Confidence            4467777777777777777777777777777654   5677777777777777777777777777775

>PHA02798 ankyrin-like protein; Provisional

Probab=99.47  E-value=5.4e-13  Score=82.60  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         7 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..++.+|+ .+++++.+|..|.||||+|+..++.+++++|++.|++++..+..|.|||++|+.
T Consensus       239 ~~i~~~l~-~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~  300 (489)
T PHA02798        239 KNILDFIF-SYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFE  300 (489)
T ss_pred             HHHHHHHH-hcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHH
Confidence            44455443 357788888899999999999999999999999999999999999999999996

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.46  E-value=3.8e-13  Score=86.38  Aligned_cols=65  Identities=18%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCC--HHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKN--PAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      +++.+++++|+..|++++.+|..|.||||+|+..++  .++++.|++.|++++.++..|.|||+.|.
T Consensus       189 ~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai  255 (764)
T PHA02716        189 YVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI  255 (764)
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            355678888888888888888888888888887774  47888888888888888888888888764

>KOG0508|consensus

Probab=99.45  E-value=1.5e-13  Score=83.37  Aligned_cols=79  Identities=25%  Similarity=0.246  Sum_probs=70.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+.-||+++++.|+.+|+++|....-..|||--||..|+.+++++|++.|+++++.|..|.|.|++||  ++++..+..+
T Consensus        91 AsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~--ykGh~~I~qy  168 (615)
T KOG0508|consen   91 ASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC--YKGHVDIAQY  168 (615)
T ss_pred             HhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee--ccCchHHHHH
Confidence            45679999999999999999887666779999999999999999999999999999999999999999  5777766655


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       169 L  169 (615)
T KOG0508|consen  169 L  169 (615)
T ss_pred             H
Confidence            4

>KOG4214|consensus

Probab=99.44  E-value=9e-13  Score=64.50  Aligned_cols=68  Identities=22%  Similarity=0.114  Sum_probs=62.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      |+.+|..+++++|+..|++++.+|.+|.|||..|+..|+..||++|++.|++......+|.+.+..+-
T Consensus        41 AAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   41 AADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             hhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhcc
Confidence            56789999999999999999999999999999999999999999999999999888888887765544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.44  E-value=3.4e-13  Score=86.60  Aligned_cols=68  Identities=19%  Similarity=0.213  Sum_probs=61.7

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHH--cCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAAR--GKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.++++.|+..|++++.+|..|+||||+|+.  .++.+++++|++.|++++.+|..|.||||+|+.
T Consensus       292 A~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        292 ARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             HHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            45688999999999999999999999999999764  467899999999999999999999999999864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.42  E-value=1.2e-12  Score=83.48  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCC---CC-----------ChHHHHHHH-----------cCCHHHHHHHHhcCCCcccc
Q psy12915          2 VLNNRLECVVALLSRMADVELVDN---SG-----------NTALHLAAR-----------GKNPAIVQALIVFGANINAL   56 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~---~~-----------~~~l~~a~~-----------~~~~~~~~~ll~~g~~~~~~   56 (91)
                      +..|+.+++++|+++|++++..|.   .|           .||||+|+.           .++.+++++|++.|++++.+
T Consensus       146 ~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~  225 (661)
T PHA02917        146 TDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI  225 (661)
T ss_pred             ccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC
Confidence            356899999999999999876542   34           599999975           45789999999999999999


Q ss_pred             ccCCCChHHHHHHhhhh-HHHHHHHhcCC
Q psy12915         57 CREGTFQGPDCCNIFKR-WRTLKRLAGGL   84 (91)
Q Consensus        57 ~~~g~tpl~~a~~~~~~-~~~~~~~~~~~   84 (91)
                      |..|.||||+|+..... .+.+..+.++.
T Consensus       226 d~~G~TpLh~A~~~g~~~~eivk~Li~g~  254 (661)
T PHA02917        226 DKNYCTALQYYIKSSHIDIDIVKLLMKGI  254 (661)
T ss_pred             CCCCCcHHHHHHHcCCCcHHHHHHHHhCC
Confidence            99999999999973221 13444455553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=3.1e-13  Score=60.68  Aligned_cols=47  Identities=38%  Similarity=0.472  Sum_probs=38.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI   47 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   47 (91)
                      |+..|+.+++++|+++|.+++.+|..|.||+|+|+..|+.+++++|+
T Consensus         8 A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    8 AARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             HHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            46789999999999999999999999999999999999999999885

...

>PHA02917 ankyrin-like protein; Provisional

Probab=99.42  E-value=2.5e-12  Score=82.06  Aligned_cols=64  Identities=25%  Similarity=0.339  Sum_probs=60.9

Q ss_pred             cHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         6 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..+.++.|+.+|++++.+|..|.||||+|+..++.+++++|++.|++++.++..|.|||++|..
T Consensus       431 ~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        431 ILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            4667899999999999999999999999999999999999999999999999999999999984

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.41  E-value=2.5e-12  Score=82.33  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=23.0

Q ss_pred             HHHHhcCCCCcccCCCCChHHHHHHHcC-CHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915         11 VALLSRMADVELVDNSGNTALHLAARGK-NPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus        11 ~~L~~~~~~~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      +.|+..|++++.+|..|+||||+|+..+ ..+++++|++.|++++..|..|.||+++|+
T Consensus       426 k~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~  484 (682)
T PHA02876        426 KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL  484 (682)
T ss_pred             HHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            3333333333333334444444443322 233444444444444444444444444433

>KOG4177|consensus

Probab=99.41  E-value=1.2e-12  Score=86.40  Aligned_cols=78  Identities=24%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      ..++...++.++.+|++++.++..++||||.|+..|+..+|++|++.|++++.++..|+||||.|+.+. ....+..+.
T Consensus       516 ~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G-~~~i~~LLl  593 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQG-HNDIAELLL  593 (1143)
T ss_pred             hhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcC-hHHHHHHHH
Confidence            346678889999999999999999999999999999999999999999999999999999999999844 333333333

>PHA02730 ankyrin-like protein; Provisional

Probab=99.37  E-value=4.6e-12  Score=80.47  Aligned_cols=62  Identities=23%  Similarity=0.280  Sum_probs=58.7

Q ss_pred             HHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCChHHHHHH
Q psy12915          8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR-EGTFQGPDCCN   69 (91)
Q Consensus         8 ~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a~~   69 (91)
                      +++++|+.+|++++.+|..|.||||+|+..++.+++++|+..|++++..+. .|.||++.|+.
T Consensus       443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence            568999999999999999999999999999999999999999999999997 59999999985

>PHA02730 ankyrin-like protein; Provisional

Probab=99.36  E-value=5e-12  Score=80.32  Aligned_cols=48  Identities=27%  Similarity=0.249  Sum_probs=26.8

Q ss_pred             ccCCCCChHHHHHHHcC---CHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915         22 LVDNSGNTALHLAARGK---NPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus        22 ~~~~~~~~~l~~a~~~~---~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .+|..|+||||+|+..+   +.++++.|++.||+++.+|..|.||||+|+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~   86 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSK   86 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHH
Confidence            34445555555555554   3555555555555555555555555555554

>KOG0514|consensus

Probab=99.30  E-value=1.9e-11  Score=72.43  Aligned_cols=72  Identities=25%  Similarity=0.275  Sum_probs=53.0

Q ss_pred             HHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          7 LECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         7 ~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      ..+++.|+..| ++|++- ..|.|+|++|+.+|+.++++.|+..|+++|++|.+|.|+|+.|+.  -+++++..++
T Consensus       320 ~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~E--HGhkEivklL  392 (452)
T KOG0514|consen  320 RTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAE--HGHKEIVKLL  392 (452)
T ss_pred             HHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhh--hChHHHHHHH
Confidence            34455555433 444432 346777788899999999999999999999999999999999998  3444444433

>KOG0505|consensus

Probab=99.30  E-value=4e-12  Score=77.77  Aligned_cols=69  Identities=25%  Similarity=0.213  Sum_probs=63.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+..++|+..|.+++.+|..||+|||.|+..+..+.+++|+..|++.+.....|.||+.+|..
T Consensus       205 Aaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  205 AAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            356788999999999999999999999999999999999999999999999999999999999999886

>PHA02792 ankyrin-like protein; Provisional

Probab=99.30  E-value=1.3e-11  Score=77.88  Aligned_cols=61  Identities=21%  Similarity=0.251  Sum_probs=46.0

Q ss_pred             HHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          9 CVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         9 ~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ++++|+.+|++++.+|..|.||||+|+..++.+++++|++.|++++.++..|.||+++|..
T Consensus       392 IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        392 ILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            4566677777777777777777777777777777777777777777777777777777764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.29  E-value=5.1e-11  Score=60.89  Aligned_cols=81  Identities=35%  Similarity=0.363  Sum_probs=66.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..++.+++++|+..+.+.+..+..|.+|+++++..+..++++.++..+++++..+..|.||+++|.. ......+..+
T Consensus        14 a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~-~~~~~~~~~L   92 (126)
T cd00204          14 AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR-NGNLDVVKLL   92 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH-cCcHHHHHHH
Confidence            356788899999999998877788889999999999999999999999998888888999999999997 3334444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ..
T Consensus        93 ~~   94 (126)
T cd00204          93 LK   94 (126)
T ss_pred             HH
Confidence            33

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.29  E-value=2.5e-11  Score=76.70  Aligned_cols=79  Identities=15%  Similarity=0.030  Sum_probs=63.2

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCC--ChHHHHHHHcCCHH---HHHHHHhcCCCccccccCCCChHHHHHHhhhhHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSG--NTALHLAARGKNPA---IVQALIVFGANINALCREGTFQGPDCCNIFKRWRT   76 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~l~~a~~~~~~~---~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~   76 (91)
                      +..|+.++++.|+++|++++..|..|  .+|||+|......+   +++.+++.|++++.+|..|.||||+|+. ....+.
T Consensus       347 a~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~-~~n~ei  425 (631)
T PHA02792        347 FDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIE-SHSVSL  425 (631)
T ss_pred             HHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHH-cCCHHH
Confidence            46788999999999999999887664  69999887766544   5788899999999999999999999996 333344


Q ss_pred             HHHHh
Q psy12915         77 LKRLA   81 (91)
Q Consensus        77 ~~~~~   81 (91)
                      +..+.
T Consensus       426 velLL  430 (631)
T PHA02792        426 VEWLI  430 (631)
T ss_pred             HHHHH
Confidence            44443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.27  E-value=3.6e-11  Score=73.42  Aligned_cols=79  Identities=15%  Similarity=-0.086  Sum_probs=55.0

Q ss_pred             cCCcHHHHHHHHhcCCCCcccC------CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVD------NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRT   76 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~------~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~   76 (91)
                      ..++.+++++|+++|++.....      ..+.+++|.+...+..++++.|++.|++++.++..|.||||+|+. .+....
T Consensus       158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~-~g~~ei  236 (437)
T PHA02795        158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIY-AGYIDL  236 (437)
T ss_pred             HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHH-cCCHHH
Confidence            3566677777777776322111      225567777777778889999999999999999999999999996 333344


Q ss_pred             HHHHhc
Q psy12915         77 LKRLAG   82 (91)
Q Consensus        77 ~~~~~~   82 (91)
                      +..+.+
T Consensus       237 VelLL~  242 (437)
T PHA02795        237 VSWLLE  242 (437)
T ss_pred             HHHHHH
Confidence            444433

>KOG0510|consensus

Probab=99.27  E-value=2.1e-11  Score=78.00  Aligned_cols=69  Identities=19%  Similarity=0.070  Sum_probs=49.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cC-CCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FG-ANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g-~~~~~~~~~g~tpl~~a~~   69 (91)
                      |++.|+.++++.|+..|++++.++..+.+|||.|+..|+..+++.|++ .+ ...+..|..|.||+|+|++
T Consensus       280 a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~  350 (929)
T KOG0510|consen  280 AARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAK  350 (929)
T ss_pred             HHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhh
Confidence            456777777777777777777777777777777777777777777776 43 3356777777777777774

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.27  E-value=5.4e-11  Score=66.22  Aligned_cols=66  Identities=30%  Similarity=0.241  Sum_probs=49.7

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCC-----HHHHHHHHhcCC---CccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKN-----PAIVQALIVFGA---NINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~g~---~~~~~~~~g~tpl~~a~~   69 (91)
                      .+....++.++..|++++..+..|.||+|+|+..++     .++++.|+..|+   ..+.++..|.||+|+|+.
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~  156 (235)
T COG0666          83 KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL  156 (235)
T ss_pred             cCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHH
Confidence            455666677777777777777778888888887777     778888888777   556667788888888875

>KOG0505|consensus

Probab=99.26  E-value=2.5e-11  Score=74.42  Aligned_cols=69  Identities=35%  Similarity=0.313  Sum_probs=62.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..+.++-++.|+..|++++..+..|.|++|-++.-.+.+|+++|++.|+++|..|.+|+||+|.|+.
T Consensus        47 A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAAS  115 (527)
T ss_pred             ccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcc
Confidence            567888889999999999888888889999999999999999999999999999999999999998885

>KOG1710|consensus

Probab=99.26  E-value=3.5e-11  Score=69.62  Aligned_cols=80  Identities=20%  Similarity=0.138  Sum_probs=63.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELV-DNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+.++.|+..|+++|.. +..++||||+|+..|+.++.+.|++.|+.....|.-|+|+-..|+. .+.+..+..
T Consensus        52 AaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAF-VG~H~CV~i  130 (396)
T KOG1710|consen   52 AAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAF-VGHHECVAI  130 (396)
T ss_pred             HHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHH-hcchHHHHH
Confidence            46778888888888888888774 4567888888888888888888888888888888888888888886 555555544


Q ss_pred             Hh
Q psy12915         80 LA   81 (91)
Q Consensus        80 ~~   81 (91)
                      +.
T Consensus       131 IN  132 (396)
T KOG1710|consen  131 IN  132 (396)
T ss_pred             Hh
Confidence            43

>KOG3676|consensus

Probab=99.26  E-value=3.3e-11  Score=76.85  Aligned_cols=77  Identities=22%  Similarity=0.209  Sum_probs=67.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC--ccccccCCCChHHHHHHhhhhHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN--INALCREGTFQGPDCCNIFKRWRTLK   78 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~--~~~~~~~g~tpl~~a~~~~~~~~~~~   78 (91)
                      |+..+..++++.|+++|+|++.+|..|+|.||..+.+-..+.-+.+++.|++  ..++|++|.|||.+|++ ..+.+...
T Consensus       247 AAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak-lGk~emf~  325 (782)
T KOG3676|consen  247 AACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK-LGKKEMFQ  325 (782)
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH-hhhHHHHH
Confidence            4567888999999999999999999999999999999888888999999999  99999999999999998 43333333

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.25  E-value=9.1e-12  Score=80.44  Aligned_cols=70  Identities=26%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC--------------CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD--------------NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPD   66 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~   66 (91)
                      |+..|+.++++.|+++|++++.++              ..|.+|+|.|+..++.++++.|++.|++++.+|..|+||+|+
T Consensus       135 Aa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~  214 (743)
T TIGR00870       135 AAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHL  214 (743)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHH
Confidence            567899999999999999988653              257899999999999999999999999999999999999999


Q ss_pred             HHHh
Q psy12915         67 CCNI   70 (91)
Q Consensus        67 a~~~   70 (91)
                      |+..
T Consensus       215 A~~~  218 (743)
T TIGR00870       215 LVME  218 (743)
T ss_pred             HHhh
Confidence            9963

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0818|consensus

Probab=99.25  E-value=4.7e-11  Score=73.15  Aligned_cols=68  Identities=29%  Similarity=0.318  Sum_probs=62.9

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ++.|+.+.+-.|+..|+++|..+ ..|.||||.|+..|+.-.++.|+-+|++++..|.+|+||+.+|..
T Consensus       141 vRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  141 VRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             hhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHh
Confidence            56788888888999999999977 469999999999999999999999999999999999999999986

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.21  E-value=8.6e-11  Score=65.41  Aligned_cols=64  Identities=31%  Similarity=0.305  Sum_probs=59.6

Q ss_pred             cHHHHHHHHhcCC---CCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          6 RLECVVALLSRMA---DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         6 ~~~~~~~L~~~~~---~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +.++++.|+..|+   ..+..+..|.||+|+|+..+..++++.++..|++++..+..|.|++++|+.
T Consensus       123 ~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~  189 (235)
T COG0666         123 NIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAK  189 (235)
T ss_pred             hHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcc
Confidence            3899999999999   555568999999999999999999999999999999999999999999997

>KOG0515|consensus

Probab=99.21  E-value=2.3e-11  Score=75.08  Aligned_cols=74  Identities=24%  Similarity=0.280  Sum_probs=62.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCChHHHHHHhhhhH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC-REGTFQGPDCCNIFKRW   74 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~~~~~~~   74 (91)
                      |+..||++++++|+..|+++|..|..||||||.|+.+++..++..|++.|+-+-... .++.||..-|-..-.++
T Consensus       590 AiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY  664 (752)
T KOG0515|consen  590 AICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGY  664 (752)
T ss_pred             hhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhH
Confidence            456799999999999999999999999999999999999999999999988765444 57789987766533333

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.16  E-value=5.5e-10  Score=57.03  Aligned_cols=68  Identities=40%  Similarity=0.477  Sum_probs=62.2

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..++.++++.|+..+..++..+..+.+|+|+|+..++.+++++|+..+.+.+..+..+.||++.|..
T Consensus        48 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~  115 (126)
T cd00204          48 AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK  115 (126)
T ss_pred             HHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            34567899999999998888888889999999999999999999999999999999999999999996

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0783|consensus

Probab=99.15  E-value=1.2e-10  Score=75.24  Aligned_cols=68  Identities=28%  Similarity=0.171  Sum_probs=63.5

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..+...++++|+++|+++..+|. .|+||||.|..-|+.+|+-.|++.|+.+.++|.+|..||+..++
T Consensus        60 ~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   60 VSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            456778999999999999999985 69999999999999999999999999999999999999999886

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.13  E-value=1.7e-10  Score=46.63  Aligned_cols=33  Identities=48%  Similarity=0.661  Sum_probs=30.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCcccccc
Q psy12915         26 SGNTALHLAARGKNPAIVQALIVFGANINALCR   58 (91)
Q Consensus        26 ~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~   58 (91)
                      .|.||||+|+..++.+++++|+..|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=99.12  E-value=1.7e-10  Score=45.67  Aligned_cols=30  Identities=53%  Similarity=0.725  Sum_probs=27.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCccc
Q psy12915         26 SGNTALHLAARGKNPAIVQALIVFGANINA   55 (91)
Q Consensus        26 ~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~   55 (91)
                      .|+||||+|+..|+.+++++|++.|+++|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            479999999999999999999999999873

>KOG0506|consensus

Probab=99.11  E-value=8.7e-11  Score=71.70  Aligned_cols=81  Identities=21%  Similarity=0.184  Sum_probs=71.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |++.|++..++.+...|.++...|...+|+||.|+..|+.+++++|+. .+.+++.+|.-|+|||+.|..  ..+.+++.
T Consensus       513 aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~--F~h~~v~k  590 (622)
T KOG0506|consen  513 AAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH--FKHKEVVK  590 (622)
T ss_pred             hhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh--cCcHHHHH
Confidence            577899999999999999999999999999999999999999999998 689999999999999999995  55555555


Q ss_pred             HhcC
Q psy12915         80 LAGG   83 (91)
Q Consensus        80 ~~~~   83 (91)
                      +++.
T Consensus       591 ~L~~  594 (622)
T KOG0506|consen  591 LLEE  594 (622)
T ss_pred             HHHH
Confidence            5543

>KOG1710|consensus

Probab=99.09  E-value=8.7e-10  Score=64.02  Aligned_cols=86  Identities=24%  Similarity=0.137  Sum_probs=67.1

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC-REGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      .++.+-...|++.--+++.+|..|.++|..|+..|+.+.++.|++.|+|+|... ..+.|||++|+-.++....-+++..
T Consensus        22 Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda  101 (396)
T KOG1710|consen   22 KNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA  101 (396)
T ss_pred             cCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhc
Confidence            455666677776645688899999999999999999999999999999998654 5788999999964444555666666


Q ss_pred             CCCCCCC
Q psy12915         83 GLQTRSI   89 (91)
Q Consensus        83 ~~~~~~i   89 (91)
                      |.+...|
T Consensus       102 Ga~~~~v  108 (396)
T KOG1710|consen  102 GARMYLV  108 (396)
T ss_pred             cCccccc
Confidence            6655444

>KOG0507|consensus

Probab=99.09  E-value=3.8e-10  Score=71.96  Aligned_cols=82  Identities=23%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+-.|+.+.++.++.++...++.+-.+.+|||.++++++.+.+.+|+..|+++=.+|.++.|++.+|++ +++...+..+
T Consensus        89 aaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~q-fgr~~Vvq~l  167 (854)
T KOG0507|consen   89 AAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASR-FGRAEVVQML  167 (854)
T ss_pred             hhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHH-hhhhHHHHHH
Confidence            466889999999999998888888889999999999999999999999999999999999999999998 7766666655


Q ss_pred             hcC
Q psy12915         81 AGG   83 (91)
Q Consensus        81 ~~~   83 (91)
                      ...
T Consensus       168 l~~  170 (854)
T KOG0507|consen  168 LQK  170 (854)
T ss_pred             hhh
Confidence            543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.03  E-value=8.4e-10  Score=70.88  Aligned_cols=69  Identities=29%  Similarity=0.275  Sum_probs=63.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhc-------CCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVF-------GANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-------g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+..|++++..|..|.||||+|+..++.++++.|+..       |++++..+..|.+|+..+..
T Consensus       122 Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        122 ACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhhh
Confidence            4678999999999999999999999999999999999999999999988       89999999999988777664

>KOG0511|consensus

Probab=98.97  E-value=5.4e-09  Score=62.68  Aligned_cols=74  Identities=20%  Similarity=0.130  Sum_probs=65.8

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRT   76 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~   76 (91)
                      ||+.|+.+.++.|+..|+++|..|...+.||.+|+.+|+...+++|++.|+-...-..+|.-.+.-|.  ..+.+.
T Consensus        43 acR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL--nd~IR~  116 (516)
T KOG0511|consen   43 ACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL--NDRIRR  116 (516)
T ss_pred             HhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh--hHHHHH
Confidence            57899999999999999999999999999999999999999999999999998888888888877666  344443

>KOG3676|consensus

Probab=98.96  E-value=5.7e-09  Score=66.99  Aligned_cols=69  Identities=32%  Similarity=0.286  Sum_probs=60.1

Q ss_pred             ccCCcHHHHHHHHhcCCCCccc---------C--------------CCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc
Q psy12915          2 VLNNRLECVVALLSRMADVELV---------D--------------NSGNTALHLAARGKNPAIVQALIVFGANINALCR   58 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~---------~--------------~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~   58 (91)
                      +.+.+.+++..|+..|+|++++         |              +.|..||.+|+..+++++++.|++.|+|++.+|.
T Consensus       192 Iv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS  271 (782)
T KOG3676|consen  192 IVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDS  271 (782)
T ss_pred             HHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCcccc
Confidence            4566789999999999988765         1              1256799999999999999999999999999999


Q ss_pred             CCCChHHHHHHh
Q psy12915         59 EGTFQGPDCCNI   70 (91)
Q Consensus        59 ~g~tpl~~a~~~   70 (91)
                      .|+|.||...-+
T Consensus       272 ~GNTVLH~lVi~  283 (782)
T KOG3676|consen  272 NGNTVLHMLVIH  283 (782)
T ss_pred             CCChHHHHHHHH
Confidence            999999999874

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.96  E-value=2.3e-09  Score=57.49  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=48.8

Q ss_pred             CccCCcHHHHHHHHh-cCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcc
Q psy12915          1 MVLNNRLECVVALLS-RMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN   54 (91)
Q Consensus         1 a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~   54 (91)
                      |+..++.+++++|+. .|++++..+..|.||||+|+..++.++++.|+..|++++
T Consensus        99 A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         99 AVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            456788999999997 489999999999999999999999999999999998765

>KOG0507|consensus

Probab=98.93  E-value=8.7e-10  Score=70.39  Aligned_cols=82  Identities=27%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+++.+-.+..|..|.+|+|+|+..|+.+.++.++..+..+|..+.+|.||||.|+. ..+...+..+
T Consensus        56 a~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq-hgh~dvv~~L  134 (854)
T KOG0507|consen   56 AVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ-HGHLEVVFYL  134 (854)
T ss_pred             HHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh-hcchHHHHHH
Confidence            578899999999999999888889999999999999999999999999999999999999999999997 3444444444


Q ss_pred             hcC
Q psy12915         81 AGG   83 (91)
Q Consensus        81 ~~~   83 (91)
                      ...
T Consensus       135 l~~  137 (854)
T KOG0507|consen  135 LKK  137 (854)
T ss_pred             Hhc
Confidence            433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.91  E-value=5.3e-09  Score=67.93  Aligned_cols=65  Identities=17%  Similarity=0.117  Sum_probs=58.6

Q ss_pred             CccCCcHHHHHHHHhc--CCCCcccCCCCChHHH-HHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSR--MADVELVDNSGNTALH-LAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~l~-~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+.++.++..  +.+++..|..|.|||| .|+..++.++++.|+..|+    .+..|.||||.|+.
T Consensus        24 A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        24 AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            5778999999999998  8889988999999999 7888889999999999887    67889999999995

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.77  E-value=3.5e-09  Score=47.78  Aligned_cols=34  Identities=35%  Similarity=0.347  Sum_probs=23.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLA   34 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a   34 (91)
                      |+.+|+.+++++|+..|++++.+|..|+||+++|
T Consensus        23 A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   23 AARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             HHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4678999999999999999999999999999986

>KOG0522|consensus

Probab=98.77  E-value=2.2e-08  Score=61.98  Aligned_cols=53  Identities=25%  Similarity=0.264  Sum_probs=49.4

Q ss_pred             CCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915         17 MADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus        17 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..++..|..|.||||+|+..|+..+++.|+..|+++..+|.+|++|+|-|..
T Consensus        45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            34577788889999999999999999999999999999999999999999996

>KOG0705|consensus

Probab=98.69  E-value=7.4e-08  Score=60.49  Aligned_cols=79  Identities=28%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             cHHHHHHHHhcCCC--C--cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          6 RLECVVALLSRMAD--V--ELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         6 ~~~~~~~L~~~~~~--~--~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +...+-.|+.+|..  +  ...+..|+|+||+|+..|+..+.++|+=.|+++..+|.+|.|+|.+|.....+...-+++.
T Consensus       636 Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq  715 (749)
T KOG0705|consen  636 DLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQ  715 (749)
T ss_pred             HHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHH
Confidence            44566678888853  2  2234567999999999999999999999999999999999999999998444444444444


Q ss_pred             cCC
Q psy12915         82 GGL   84 (91)
Q Consensus        82 ~~~   84 (91)
                      -|+
T Consensus       716 ~gc  718 (749)
T KOG0705|consen  716 YGC  718 (749)
T ss_pred             cCC
Confidence            443

>KOG4369|consensus

Probab=98.67  E-value=2e-08  Score=67.32  Aligned_cols=81  Identities=26%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccc-cccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA-LCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~-~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      ||..||.+.+++|+.+|+++.-+|..|.+|+..++..|+..+|+.|+..+++++. .|..+.|+|.+||. .++.+.+.+
T Consensus       764 acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs-ggr~~vvel  842 (2131)
T KOG4369|consen  764 ACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS-GGRTRVVEL  842 (2131)
T ss_pred             cccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC-CCcchHHHH
Confidence            5788999999999999999988889999999999888898888888888888754 45678888888887 566666555


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      ++.
T Consensus       843 Ll~  845 (2131)
T KOG4369|consen  843 LLN  845 (2131)
T ss_pred             HHH
Confidence            554

>KOG0521|consensus

Probab=98.67  E-value=3.1e-08  Score=64.62  Aligned_cols=70  Identities=29%  Similarity=0.280  Sum_probs=65.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNI   70 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~   70 (91)
                      |+..+....+++|++.|++++..|..|++|+|.+...|+...+..++..|+++++.+.+|.+|+++|...
T Consensus       663 a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  663 AVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            4567788899999999999999999999999999999999999999999999999999999999999873

>KOG2505|consensus

Probab=98.48  E-value=6.4e-07  Score=55.55  Aligned_cols=61  Identities=18%  Similarity=0.105  Sum_probs=51.5

Q ss_pred             HHHHHHHhcCCCCccc------CCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915          8 ECVVALLSRMADVELV------DNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus         8 ~~~~~L~~~~~~~~~~------~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      ..++.|...++..|..      +....|+||+|+..|..+++..|++.|+++-.+|..|.||+.++.
T Consensus       405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4677777777665442      344679999999999999999999999999999999999999877

>KOG2384|consensus

Probab=98.47  E-value=7.5e-07  Score=49.19  Aligned_cols=63  Identities=17%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             CCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915         17 MADVELVDNSGNTALHLAARGKNPAIVQALIVFG-ANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus        17 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +.++|.+|..|||+++-|+..|+.+.+.+|+..| +.+...|..+.++..+|-+  .+..+++..+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek--~g~~~fvh~l   65 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEK--GGAQAFVHSL   65 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHh--cChHHHHHHH
Confidence            4578899999999999999999999999999999 8899999999999999996  5544444433

>KOG0705|consensus

Probab=98.31  E-value=1.4e-06  Score=55.00  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcc
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN   54 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~   54 (91)
                      |+..|+..+.+.|+.+|+++..+|..|+|+|.||.+.|.-+|++.|+..|+...
T Consensus       668 a~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  668 AARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            577899999999999999999999999999999999999999999999987643

>KOG4369|consensus

Probab=98.26  E-value=5.7e-07  Score=60.75  Aligned_cols=66  Identities=27%  Similarity=0.250  Sum_probs=39.3

Q ss_pred             CCcHHHHHHHHhcCCCCccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELV-DNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .||..+|+.|+++.+++..+ |+-+.|+|.++|..|+.++++.|+..|++...++..+.||+.+|..
T Consensus       800 agh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~S  866 (2131)
T KOG4369|consen  800 AGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARS  866 (2131)
T ss_pred             cCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcC
Confidence            45556666666666655553 3345566666666666666666666666666666666666666653

>KOG0782|consensus

Probab=98.17  E-value=5e-06  Score=52.83  Aligned_cols=69  Identities=26%  Similarity=0.304  Sum_probs=57.7

Q ss_pred             CccCCcHHHHHHHHhcCCC--CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMAD--VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+-+++++++++|..  .+..+..|.|.||-|+..++..+..+|++.|+.+...|..|.||-.-|..
T Consensus       906 a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqq  976 (1004)
T KOG0782|consen  906 AAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQ  976 (1004)
T ss_pred             HHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHh
Confidence            4567888999999998864  55567778999999988888888889999999999999999999877765

>KOG0783|consensus

Probab=98.14  E-value=1.1e-06  Score=57.75  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=53.0

Q ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCChHHHHHHhhhhHHHHHHHhc
Q psy12915         20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR-EGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus        20 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      .+..|..|++++|+++..+..+++++|+..|+++..+|. .|.||||-|-. .+......++++
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiy-yG~idca~lLL~  107 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIY-YGNIDCASLLLS  107 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhh-hchHHHHHHHHh
Confidence            677899999999999999999999999999999999995 79999999995 444555555554

>KOG0818|consensus

Probab=97.83  E-value=3.8e-05  Score=48.14  Aligned_cols=48  Identities=21%  Similarity=0.190  Sum_probs=43.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV   48 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   48 (91)
                      |+..|...-++.|+-+|++++.+|..|.||+.+|...|+-++.+.|++
T Consensus       174 AAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  174 AAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            567889999999999999999999999999999999999888766554

>KOG0506|consensus

Probab=97.83  E-value=2.3e-05  Score=48.80  Aligned_cols=49  Identities=27%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             CccCCcHHHHHHHHh-cCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q psy12915          1 MVLNNRLECVVALLS-RMADVELVDNSGNTALHLAARGKNPAIVQALIVF   49 (91)
Q Consensus         1 a~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   49 (91)
                      |+..|+++++++|+. .+.+++.+|++|++||.-|...++.+++.+|-+.
T Consensus       546 AAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  546 AAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             ecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence            577899999999988 6789999999999999999999999999999874

>PF13606 Ank_3: Ankyrin repeat

Probab=97.72  E-value=2.1e-05  Score=30.89  Aligned_cols=22  Identities=36%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcc
Q psy12915          1 MVLNNRLECVVALLSRMADVEL   22 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~   22 (91)
                      |+.+|+.+++++|+++|++++.
T Consensus         9 A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    9 AASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             HHHhCCHHHHHHHHHcCCCCCC
Confidence            5788999999999999998863

>smart00248 ANK ankyrin repeats

Probab=97.71  E-value=0.00014  Score=26.94  Aligned_cols=28  Identities=50%  Similarity=0.668  Sum_probs=24.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCcc
Q psy12915         27 GNTALHLAARGKNPAIVQALIVFGANIN   54 (91)
Q Consensus        27 ~~~~l~~a~~~~~~~~~~~ll~~g~~~~   54 (91)
                      +.+|+++++..++.++++.++..+.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6789999999999999999998877653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0522|consensus

Probab=97.68  E-value=0.00011  Score=46.19  Aligned_cols=48  Identities=31%  Similarity=0.353  Sum_probs=43.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV   48 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~   48 (91)
                      |+..|+...+..|+..|+++..++..||+|||-|+..|+.+++..++.
T Consensus        62 AV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   62 AVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             HHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            467799999999999999999999999999999999999988766654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.61  E-value=4.4e-05  Score=30.43  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=21.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD   24 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~   24 (91)
                      |+..|+.+++++|+.+|++++.+|
T Consensus         9 A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    9 AAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             HHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             HHHHHHHHHHHHHHHCcCCCCCCC
Confidence            467899999999999999998875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=97.60  E-value=0.00017  Score=46.28  Aligned_cols=75  Identities=15%  Similarity=0.052  Sum_probs=55.2

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC--ccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN--INALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~--~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      ++...+...-..|.+.-.++....+.||+|+..|+.++|+++++.|-.  ++..+..|.|+||-|+-+..+...-.+
T Consensus       877 ~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~l  953 (1004)
T KOG0782|consen  877 SDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLL  953 (1004)
T ss_pred             ccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHH
Confidence            333334444445666667777788999999999999999999997744  578889999999999864444433333

>KOG0511|consensus

Probab=97.50  E-value=0.00032  Score=42.92  Aligned_cols=52  Identities=21%  Similarity=0.107  Sum_probs=44.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915         28 NTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus        28 ~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      ..-+..||..|..+.++.|++.|.++|..|..+..||.+|+  .-+|..++.++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAs--LcGHe~vvklL   88 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLAS--LCGHEDVVKLL   88 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHH--HcCcHHHHHHH
Confidence            45677899999999999999999999999999999999999  55555555443

>KOG0520|consensus

Probab=97.35  E-value=3.4e-05  Score=51.56  Aligned_cols=38  Identities=32%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             cCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCc
Q psy12915         16 RMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI   53 (91)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~   53 (91)
                      .|..++++|..||||||||+.+|+..++..|.+.|++.
T Consensus       630 ~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  630 DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             cccccccccCCCCcccchHhhcCHHHHHHHHHHhcccc
Confidence            45566666667777777777777777776666655443

>KOG0520|consensus

Probab=97.26  E-value=0.0001  Score=49.41  Aligned_cols=72  Identities=14%  Similarity=-0.010  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHhc-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          5 NRLECVVALLSR-MADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         5 ~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      ++.-.++.++.- +......|..+...+|.++ .+..+++-.++. .|..++++|..|+||||||..  .+++.+..
T Consensus       585 lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~--~G~e~l~a  658 (975)
T KOG0520|consen  585 LYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF--RGREKLVA  658 (975)
T ss_pred             hHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhh--cCHHHHHH
Confidence            344455555553 5555556677777888855 445555544444 688899999999999999995  55444443

>KOG0521|consensus

Probab=97.11  E-value=0.00095  Score=44.52  Aligned_cols=45  Identities=27%  Similarity=0.312  Sum_probs=42.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915         25 NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus        25 ~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..|.+++|.++..+....++.|+..|+++|..|..|.+|+|.+..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~  698 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATA  698 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhh
Confidence            346899999999999999999999999999999999999999986

>KOG3609|consensus

Probab=97.11  E-value=0.0014  Score=43.57  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=54.8

Q ss_pred             ccCCcHHHHHHHHhcC----CCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-------------------------
Q psy12915          2 VLNNRLECVVALLSRM----ADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN-------------------------   52 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~----~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~-------------------------   52 (91)
                      +..|+...++..+...    .++++.|..|++++++|..+.+.+++++|++.+..                         
T Consensus        33 ~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~  112 (822)
T KOG3609|consen   33 HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFV  112 (822)
T ss_pred             HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhccc
Confidence            4556666666665532    34566666677777777777677766666665311                         


Q ss_pred             -----------ccccccCCCChHHHHHHhhhhHHHHHHHhcCCCCCCCC
Q psy12915         53 -----------INALCREGTFQGPDCCNIFKRWRTLKRLAGGLQTRSIP   90 (91)
Q Consensus        53 -----------~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~i~   90 (91)
                                 ....-..+.||+.+|+. .+.++.+..++.+.-+..+|
T Consensus       113 ~~~~~~~~~d~~~~~ft~ditPliLAAh-~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  113 DAPYLERSGDANSPHFTPDITPLMLAAH-LNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             ccchhccccccCcccCCCCccHHHHHHH-hcchHHHHHHHHcCCCCCCC
Confidence                       01222356799999997 77788887777765444443

>KOG2384|consensus

Probab=96.56  E-value=0.013  Score=32.99  Aligned_cols=56  Identities=29%  Similarity=0.269  Sum_probs=47.1

Q ss_pred             CccCCcHHHHHHHHhcC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcccc
Q psy12915          1 MVLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL   56 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~   56 (91)
                      |+..|..+.+.+|+.+| +.+.+.|..+.+...+|-..|..+++..|.+.-.+-...
T Consensus        19 aa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen   19 AAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             HhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence            35568889999999999 789999999999999999999999999998865444333

>KOG3609|consensus

Probab=95.67  E-value=0.028  Score=37.78  Aligned_cols=53  Identities=28%  Similarity=0.211  Sum_probs=37.3

Q ss_pred             cCCcHHHHHHHHhcCCCC-------c---ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccc
Q psy12915          3 LNNRLECVVALLSRMADV-------E---LVDNSGNTALHLAARGKNPAIVQALIVFGANINA   55 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~-------~---~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~   55 (91)
                      ..|..+.++.++.+-...       +   ..=..+.||+.+|+..++.++++.|+.+|+.+..
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            345566777776653221       1   1113467999999999999999999999987654

>KOG2505|consensus

Probab=94.36  E-value=0.035  Score=35.48  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=35.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI   47 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll   47 (91)
                      |+.+|..+++.+++..|+++...|..|.||+.++.   +.++-..++
T Consensus       437 aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  437 AAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             HHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            46678899999999999999999999999998876   444444443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.02  E-value=1.2  Score=26.18  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=18.5

Q ss_pred             cCCHHHHHHHHhcC-CCccc---cccCCCChHHHHHH
Q psy12915         37 GKNPAIVQALIVFG-ANINA---LCREGTFQGPDCCN   69 (91)
Q Consensus        37 ~~~~~~~~~ll~~g-~~~~~---~~~~g~tpl~~a~~   69 (91)
                      .-+..+++.++..| +++|.   +-+.|.|.|+-|..
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~K  263 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMK  263 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHh
Confidence            34455666666665 33432   23466677777765

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.54  E-value=1.8  Score=20.46  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=30.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVF   49 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~   49 (91)
                      |+..|+.++++.+++.+ .++      ...+..|....+-+++++|++.
T Consensus        13 Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   13 AIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            35678888888887654 222      3457888888889999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		8e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		7e-04

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1   MVLNN-RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
           +V+NN  LE +  LL   ADV   D SG T LHLAA   +  IV+ L+ +GA++NA+  +
Sbjct: 53  LVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ 112
Query: 60  G 60
           G
Sbjct: 113 G 113

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
          N   E V  LLS+ ADV      GNT LHLAA+  +  IV+ L+  GA++NA  ++G 
Sbjct: 19 NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN 76

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   DN G+T LHLAA+  +  IV+ L+  GA++NA  + G
Sbjct: 92  HLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           N +LE V  LL   ADV   D++G T LHLAA   +  IV+ L+  GA++NA  R G
Sbjct: 49  NGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAG 105

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            LE V  LL   ADV  +D SG+T LHLAA+  +  IV+ L+ +GA++NA
Sbjct: 59  HLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA 108

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 31/55 (56%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   DN G T LHLAA   +  IV+ L+  GA++NA   EG
Sbjct: 59  HLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D  G T LHLAAR  +  IV+ L+  GA++NA  ++G
Sbjct: 59  HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 113

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D  G T LHLAAR  +  IV+ L+  GA++NA  ++G
Sbjct: 47  HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D  G T LHLAAR  +  IV+ L+  GA++NA  ++G
Sbjct: 47  HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +   LE V  LL   ADV   D +G+T LHLAA   +  IV+ L+ +GA++NA  + G
Sbjct: 89  MTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 5   NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           + LE V  LL   ADV   DN G+T LHLAA   +  IV+ L+  GA++NA  + G
Sbjct: 58  DHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFG 113

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 6  RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           LE V  LL   ADV  VD +G T LHLAA   +  IV+ L+ +GA++NA
Sbjct: 47 HLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA 96

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%)
Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           L   LE V  LL   ADV   D  G T LHLAA   +  IV+ L+ +GA++NA  + G
Sbjct: 89  LYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 8   ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           E V  L+S+ ADV   D+ G T LH AA+  +  IV+ LI  GA++NA   +G
Sbjct: 51  EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 103

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          N  LE V  LL   ADV   D +G T LHLAAR  +  +V+ L+  GA++NA  + G
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          N  LE V  LL   ADV   D +G T LHLAAR  +  +V+ L+  GA++NA  + G
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           N   E V  L+S+ ADV   D+ G T LH AA   +  +V+ LI  GA++NA   +G
Sbjct: 47  NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 103

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +N+ LE V  LL   ADV  +D  G T LHL A   +  IV+ L+  GA++NA  + G
Sbjct: 56  MNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV  VD  G+T LHLAA   +  IV+ L+  GA++NA  + G
Sbjct: 92  HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV  VD  G+T LHLAA   +  IV+ L+  GA++NA  + G
Sbjct: 92  HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D++G T LHLAA   +  IV+ L+ +GA++NA  + G
Sbjct: 92  HLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV    N+G T LHLAA   +  IV+ L+  GA++NA  + G
Sbjct: 59  HLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV  +D+ G T LHLAA+     IV+ L+  GA++NA  + G
Sbjct: 92  HLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D+ G T LHLAA   +  IV+ L+ +GA++NA  + G
Sbjct: 59  HLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          L++  ADV   D+ G+T LHLAA   +P IV+ L+  GA++NA   +G
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            N  LE V  LL   ADV  VD++G T L LAA   +  IV+ L+  GA++NA   EG
Sbjct: 56  FNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           N   E V  LLS+ AD    D+ G T LHLAA   +  +V+ L+  GA+ NA   +G
Sbjct: 47  NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 103

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D+ G T LHLAA+  +  IV+ L+  GA++NA  + G
Sbjct: 92  HLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D  G T LHLAA   +  IV+ L+ +GA++NA  + G
Sbjct: 59  HLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           N   E V  LLS+ AD    D+ G T LH AA   +  IV+ L+  GA+ NA   +G
Sbjct: 47  NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 103

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D++G T LHLAA   +  IV+ L+  GA++NA  + G
Sbjct: 92  HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   DN G T LHLAA   +  IV+ L+  GA++NA  + G
Sbjct: 59  HLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFG 113

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 6   RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            LE V  LL   ADV   D  G T LHLAA   +  IV+ L+ +GA++NA  + G
Sbjct: 59  HLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	3e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-09
2rfa_A	232	Transient receptor potential cation channel subfa	4e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	5e-06
2pnn_A	273	Transient receptor potential cation channel subfa	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-08
2etb_A	256	Transient receptor potential cation channel subfam	8e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-04

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.2 bits (150), Expect = 3e-14
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          N  LE V  LL   ADV   D +G T LHLAAR  +  +V+ L+  GA++NA
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.2 bits (124), Expect = 2e-10
 Identities = 22/48 (45%), Positives = 27/48 (56%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
          N  LE V  LL   ADV   D +G T LHLAAR  +  +V+ L+  GA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.8 bits (97), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
          +G T LHLAAR  +  +V+ L+  GA++NA
Sbjct: 1  NGRTPLHLAARNGHLEVVKLLLEAGADVNA 30

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.2 bits (157), Expect = 3e-14
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 3  LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          L    + V  ++  + D  L ++ G TALH A    +  IV+ L+ FG N+NA
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.4 bits (142), Expect = 5e-12
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               E V  L+    +V   D+ G T LH AA   N  + + L+  GA + A
Sbjct: 80  AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N  +     ++    V+  +      L  ++      +VQ +I    + + 
Sbjct: 15 TNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 3/55 (5%)

Query: 4   NNRLECVVALLSRMADVELVDNSGN---TALHLAARGKNPAIVQALIVFGANINA 55
            N ++    L+   A V  +  S                    Q L      +  
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 4e-07
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          + +G  +L    R          I  G  +  
Sbjct: 2  EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF 33

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               +C   L      + +++     AL      +N   +   +  G  +  + RE 
Sbjct: 149 EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP-QNDDEL--PMKEGDCMTIIHRED 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 23/58 (39%), Positives = 28/58 (48%)

Query: 3  LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          L   LE V   +  M D    +  G TALH A  G N +IV  LI  GAN+N+    G
Sbjct: 30 LTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.3 bits (139), Expect = 9e-12
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                 V  L++  A+V   D+ G T LH AA   +  I  AL+  GA I A
Sbjct: 64  GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 4   NNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPA--IVQALIVFGANINA 55
            N     +AL+   A +     + G TA       +         L     ++  
Sbjct: 97  CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 5/52 (9%), Positives = 14/52 (26%), Gaps = 1/52 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               +C   L      + L+++    AL   +  +    +         +  
Sbjct: 133 EGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLR 183

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.8 bits (104), Expect = 9e-07
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 10 VVALLSRMADVELVDN---SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          + ++L +            +    L  AA      +VQ  +    + +    EG
Sbjct: 1  MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG 54

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.5 bits (153), Expect = 4e-14
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              L+ +V L    A +++ D  G   + LA    +  + + L         
Sbjct: 88  EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.0 bits (149), Expect = 1e-13
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            R+E V ALL   A+    ++ G   + +   G +  + + L++ GA  N      
Sbjct: 22 RGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPAT 77

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.9 bits (136), Expect = 1e-11
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNT-ALHLAARGKNPAIVQALIVFGANINALCREG 60
                    LL   A+    D +  T  +H AAR      +  L   GA ++     G
Sbjct: 54  MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 6e-07
 Identities = 12/37 (32%), Positives = 14/37 (37%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                 L  AA       V+AL+  GAN NA    G
Sbjct: 9  MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG 45

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.8 bits (154), Expect = 4e-14
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             +E V  LL   AD  ++     +AL LA+ G    IV  L+    +IN 
Sbjct: 46 FGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 5e-14
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            N ++CV ALL+R AD+    +SG T + LA       + Q +      +       
Sbjct: 112 GNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP 168

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.3 bits (150), Expect = 1e-13
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               + V  LL R  D+ + D +G T L  A RG +   V+AL+  GA++  
Sbjct: 79  GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 1e-10
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 4  NNRLECVVALLSRMAD-VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             L+ +   L +  + V   D  G T L  A+       V+ L+ +GA+ + L +E 
Sbjct: 12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 35.1 bits (82), Expect = 9e-04
 Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGAN-INA 55
           + ++H  A       ++  +  G N +N 
Sbjct: 2  DSLSIHQLAAQGELDQLKEHLRKGDNLVNK 31

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.4 bits (153), Expect = 5e-14
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          + ++  V  LL   AD +L+     +AL LA       IV+ L+  G ++N 
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.0 bits (152), Expect = 6e-14
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            N ++CV  LL   AD  +  +SG  ++ LA      ++ Q +      +  
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.3 bits (150), Expect = 1e-13
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               + V  LL    DV   D +G T L  A  G +   V+ L+  GA+   
Sbjct: 79  KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.1 bits (147), Expect = 4e-13
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             +  +   + +   +   D  G T L  AA     A+V+ L+  GA+   L +  
Sbjct: 13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.2 bits (98), Expect = 5e-06
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
          + + ++H  A       +   I     IN 
Sbjct: 2  ANSLSVHQLAAQGEMLYLATRIEQENVINH 31

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.0 bits (152), Expect = 6e-14
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              E    LL R A+ +L D +G   +H AAR      +Q L+ F A++N 
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.1 bits (147), Expect = 3e-13
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             LE + +LL    +V   +  G TAL +   G NP I + L++ GAN + 
Sbjct: 15 RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDL 65

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 56.2 bits (137), Expect = 9e-12
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
              L+ +  LL   ADV + DN GN  LHLAA+  +  +V+ L+   A N+     +G
Sbjct: 80  AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.1 bits (116), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 4   NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
              L  V  L+   A +V   ++ G+TA  LA       +V  +   GA
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 1e-06
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          +       L  AA   +   + +L+    N+NA
Sbjct: 1  MAEPWGNELASAAARGDLEQLTSLLQNNVNVNA 33

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.3 bits (150), Expect = 8e-14
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            ++E V  LL   AD   ++  G   + +   G +  + + L++ GA  N 
Sbjct: 22 RGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAELLLLHGAEPNC 72

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.9 bits (136), Expect = 7e-12
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
              L+ +V L    A +++ D  G   + LA    +  I + L     +
Sbjct: 88  EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.5 bits (135), Expect = 1e-11
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNT-ALHLAARGKNPAIVQALIVFGANINALCREG 60
               +    LL   A+    D +  T  +H AAR      +  L   GA ++     G
Sbjct: 54  MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG 111

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.1 bits (126), Expect = 3e-10
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            + ++  S +  L  AA       V+ L+  GA+ NAL R G
Sbjct: 3  PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG 45

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.1 bits (152), Expect = 9e-14
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +   + V  LL   AD+  V+  GN  LH A       + + L+  GA ++   + G
Sbjct: 82  HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 61.7 bits (151), Expect = 1e-13
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             R   V  L+ R A + +++   +T LHLAA   +  IVQ L+ + A+INA
Sbjct: 49  EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.8 bits (146), Expect = 5e-13
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             + +    L++  A V + +  G   +  A       + +     G N+N 
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 54.4 bits (132), Expect = 7e-11
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 4  NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                V   L     D+   D+ G + LH A R    A+V+ LI+ GA IN 
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 2e-05
 Identities = 5/33 (15%), Positives = 9/33 (27%), Gaps = 1/33 (3%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGAN-INA 55
                 +    R  N   V+  +    N +N 
Sbjct: 2  SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ 34

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 60.5 bits (148), Expect = 9e-14
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          N   E V  LLS+ ADV      GNT LHLAA+  +  IV+ L+  GA++NA
Sbjct: 19 NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 59.3 bits (145), Expect = 2e-13
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N   E V  LL++ ADV      GNT  HLA +  +  IV+ L   GA++NA
Sbjct: 52  NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.7 bits (107), Expect = 1e-07
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             GNT LH AA+  +   V+ L+  GA++NA
Sbjct: 6  SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA 37

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 37.4 bits (88), Expect = 8e-05
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALH 32
           N   E V  L ++ ADV       +   H
Sbjct: 85  NGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 61.3 bits (150), Expect = 1e-13
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                 + LL + A   + D SG + +H AAR      ++ L+  GA++N 
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 57.8 bits (141), Expect = 2e-12
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4  NNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             ++ V  LL   +   + ++  G TAL +   G + AI   L+  GA+ N 
Sbjct: 12 RGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPNV 63

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.5 bits (135), Expect = 2e-11
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              L+ +  L+   ADV + D +G   +HLA +  + A+V  L    ++++ 
Sbjct: 78  TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHR 128

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.6 bits (112), Expect = 5e-08
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
                 VV+ L+  +D+   D  G T L LA +     +V  L 
Sbjct: 111 EGHTA-VVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 35.5 bits (83), Expect = 7e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)

Query: 27 GNTALHLAARGKNPAIVQALIV-FGANINA 55
              L  AA   +   V+ L+     + +A
Sbjct: 2  AGDRLSGAAARGDVQEVRRLLHRELVHPDA 31

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.7 bits (151), Expect = 1e-13
 Identities = 18/52 (34%), Positives = 22/52 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             R E V AL+   AD+E+ D  G TAL LA            + FG  I  
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               + +  LL    DV+ VD +G TAL   A   +   V+ L   GA+++ 
Sbjct: 54  KADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 58.7 bits (143), Expect = 2e-12
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINA 55
               +CV  L    AD++  D   G TALH+AA    P +V+AL+  GA+I  
Sbjct: 86  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          +      V      ADV    +   T    AAR  +   +  L+    +++A
Sbjct: 24 DGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDA 71

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 38.6 bits (91), Expect = 4e-05
 Identities = 2/33 (6%), Positives = 8/33 (24%)

Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              G     +  +  +           A++ +
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS 42

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.4 bits (148), Expect = 1e-13
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          N  LE V  LL   ADV   D +G T LHLAAR  +  +V+ L+  GA++NA
Sbjct: 12 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.1 bits (147), Expect = 2e-13
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          N  LE V  LL   ADV   D +G T LHLAAR  +  +V+ L+  GA++NA
Sbjct: 45 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.3 bits (127), Expect = 2e-10
 Identities = 22/48 (45%), Positives = 27/48 (56%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
           N  LE V  LL   ADV   D +G T LHLAAR  +  +V+ L+  GA
Sbjct: 78  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.8 bits (97), Expect = 4e-06
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 26 SGNTALHLAARGKNPAIVQALIVFGANINA 55
          +G T LHLAAR  +  +V+ L+  GA++NA
Sbjct: 1  NGRTPLHLAARNGHLEVVKLLLEAGADVNA 30

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.1 bits (147), Expect = 1e-13
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          N  L+ V   +++  DV      G   LH AA      I++ L++ GA+INA
Sbjct: 17 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.0 bits (139), Expect = 2e-12
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             +LE +  LL + AD+   D    T L  A    + + V+ L+  GA+   
Sbjct: 50  CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.1 bits (108), Expect = 9e-08
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQ 44
              + CV  LLS+ AD  +    G TA          A++Q
Sbjct: 83  EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 42.8 bits (102), Expect = 8e-07
 Identities = 4/33 (12%), Positives = 13/33 (39%)

Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          + +  +     A +  +   V+  +  G ++N 
Sbjct: 3  LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR 35

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 18/52 (34%), Positives = 22/52 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             R E V AL+   AD+E+ D  G TAL LA            + FG  I  
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 57.6 bits (140), Expect = 8e-12
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINA 55
               +CV  L    AD++  D   G TALH+AA    P +V+AL+  GA+I  
Sbjct: 87  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               + +  LL    DV+ VD +G TAL   A   +   V+ L   GA+++ 
Sbjct: 55  KADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          +      V      ADV    +   T    AAR  +   +  L+    +++A+   G
Sbjct: 25 DGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENG 77

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 6/74 (8%), Positives = 11/74 (14%), Gaps = 22/74 (29%)

Query: 4   NNRLECVVALLSRMADV-----------------ELV-----DNSGNTALHLAARGKNPA 41
             +       +     +                 E+         G    +L        
Sbjct: 154 ILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGD 213

Query: 42  IVQALIVFGANINA 55
                 V  A   A
Sbjct: 214 CEWVKGVHVAEDVA 227

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 2/32 (6%), Positives = 8/32 (25%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             G     +  +  +           A++ +
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS 43

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.3 bits (150), Expect = 2e-13
 Identities = 19/54 (35%), Positives = 26/54 (48%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V NNRL     LLS+ ++V   D SG T L  +       +   L+  GAN+N 
Sbjct: 76  VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.5 bits (148), Expect = 4e-13
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                +  L+     +E  D  G+TAL  A +     I + L+  G+N+N 
Sbjct: 45 LGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.6 bits (143), Expect = 2e-12
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           ++    E    LL   A+V   +  G T L +A++     IV+ L+  GA+I+A
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 48.5 bits (117), Expect = 1e-08
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
             R E V  LL   AD+   D +G TA   A       +++   
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 45.8 bits (110), Expect = 1e-07
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          D+   T L +A        +  L+     +  
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLED 63

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.8 bits (149), Expect = 2e-13
 Identities = 24/52 (46%), Positives = 31/52 (59%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N  LE V  LL   ADV  VD++G T L LAA   +  IV+ L+  GA++NA
Sbjct: 57  NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.9 bits (144), Expect = 1e-12
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              LE V  LL   ADV   D  G+T LHLAA   +  IV+ L+  GA++NA
Sbjct: 90  FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.5 bits (143), Expect = 1e-12
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            R + V  L++  ADV   D SG T LHLAA   +  IV+ L+  GA++NA
Sbjct: 24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 48.9 bits (118), Expect = 7e-09
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
              LE V  LL   ADV   D  G TA  ++    N  + + L 
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.1 bits (103), Expect = 9e-07
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +     L  AAR      V+ L+  GA++NA
Sbjct: 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNA 42

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.5 bits (153), Expect = 2e-13
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            NR+  V  LL   ADV   D  G   LH A    +  + + L+  GA +NA+    
Sbjct: 68  YNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.6 bits (148), Expect = 1e-12
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               + +  L    A +  +D+ G TALH AA   +    + L+ +G++ + +  +G
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.2 bits (147), Expect = 2e-12
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           N  + +  L     +    D   +T LHLAA      IVQ L+  GA+++A  + G
Sbjct: 35 GNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.8 bits (146), Expect = 2e-12
 Identities = 15/59 (25%), Positives = 20/59 (33%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                 E    LL   A V  +D    T LH AA      +   L+  GA+   +   G
Sbjct: 99  CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.9 bits (141), Expect = 9e-12
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             R +    LL + A+V   +    T LH+AA   +  +++ L   GA +NAL   G
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG 280

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 8e-10
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAAR---GKNPAIVQALIVFGANINALCREG 60
              L  V   L+          S  TALH A      K   + + L+  GAN+N   ++ 
Sbjct: 188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF 247

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            L   L+    LLS  +D  ++   G TA  +         VQ ++     +  
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSESTPMRT 336

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            NR+E    LLS  AD  LV+  G +A+ +A   +    +       + + A
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 8e-08
 Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 13 LLSRMADVELVDNSGNTALHLAARGKN-PAIVQALIVFGANINALCREG 60
          L    A   L        L  AAR  N   ++  L     N +A     
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRK 58

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.1 bits (152), Expect = 3e-13
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +     +  L+S+   V ++     + LH A  G + + V+ L+  GA +N +  + 
Sbjct: 69  HGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.4 bits (150), Expect = 5e-13
 Identities = 16/53 (30%), Positives = 21/53 (39%)

Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           L   L CV  LL   A V  V    +T L  A    +   V  L+  GA++  
Sbjct: 101 LGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.8 bits (146), Expect = 2e-12
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              +ECV +L++   +++   +   T L+LA   +  A V+ L+  GA++N 
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.4 bits (145), Expect = 2e-12
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N +  CV  LL   ADV       ++ LH   R  +  +   L+ FGA+  A
Sbjct: 200 NQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.0 bits (136), Expect = 4e-11
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +   +CV  LL   A V+  ++   + +H AAR  +   V +LI +G NI+      
Sbjct: 135 SGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 2e-10
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               E    L+   AD +  +  G   + L    ++P     L   GA++  
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPP-ESPLAQLFLEREGASLPK 282

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 31/88 (35%)

Query: 4  NNRLECVVALLSRMADVELVDN-------------------------------SGNTALH 32
          ++       L+ R + +  +D                                S  + +H
Sbjct: 5  HHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH 64

Query: 33 LAARGKNPAIVQALIVFGANINALCREG 60
           AA   +   ++ LI  G  +N +  + 
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADH 92

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.7 bits (146), Expect = 3e-13
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             +  V  LL   +D  + D++G T LH A    +  +V+ L+   A +N    + 
Sbjct: 20 KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.0 bits (139), Expect = 3e-12
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +  L+ V  LL   A V       ++ LH AA+  +  IV+ L+ +GA+ NA+   G
Sbjct: 53  HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 1e-09
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N  ++ V  LLS  A    V+  G   +         +++       ++  +
Sbjct: 86  NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.7 bits (107), Expect = 1e-07
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           D    ++ G T LH+A+   +   V+ L+  G++ N 
Sbjct: 2  IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV 38

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 2   VLNNRLECVVALLSRMADVELV-----DNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
            L + LE  + L+    ++           G TALH+A   +N  +V+AL+  GA+++A 
Sbjct: 45  ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR 104

Query: 57  CREGTFQGPDCCNIFKRWRTL 77
                F       I+     L
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPL 125

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQA----LIVFGANINA 55
                 E V  L+   AD+   D+ GNT LH+     N          L+ +    + 
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL 186

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 2  VLNNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             N ++ +  LL     +V      G TALH+AA   N      L+     +  
Sbjct: 11 AKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 13/67 (19%)

Query: 2   VLNNRLECVVALLSRMADVELVDNS-------------GNTALHLAARGKNPAIVQALIV 48
           V+N  +  V ALL+R A V                   G   L  AA   +  IV+ LI 
Sbjct: 83  VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142

Query: 49  FGANINA 55
            GA+I A
Sbjct: 143 HGADIRA 149

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.3 bits (150), Expect = 3e-13
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V NN L  V  LL   A+V     SG++ALH A+      +V+ L+  GA+ + 
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 58.2 bits (142), Expect = 4e-12
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 2  VLNNRLECVVALLSRM----ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC 57
          V+   L  V  L++       ++++ +N   T LHLA     P++V+ L+  GA+  AL 
Sbjct: 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD 76

Query: 58 REG 60
          R G
Sbjct: 77 RHG 79

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 9e-12
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V     E V  LL R AD++ VD  SG + L  A    + ++VQ L+  GAN+NA
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 56.3 bits (137), Expect = 2e-11
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA----NINA 55
           V+      V  L++  A    +D  G TA HLA   ++P  ++AL+   A    ++ A
Sbjct: 54  VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 111

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.5 bits (135), Expect = 4e-11
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 4   NNRLECVVALLSRMA----DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +    C+ ALL   A    D+E  +  G TALH+A   +    VQ L+  GA+I+A
Sbjct: 89  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA 144

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 54.8 bits (133), Expect = 8e-11
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
                L  V  L+   AD  L +   +T L +A   +   I++      A+
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 6e-06
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 24 DNSGNTALHLAARGKNPAIVQALI----VFGANINA 55
          D  G+T LH+A    N   V  L+      G  ++ 
Sbjct: 6  DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI 41

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.1 bits (152), Expect = 4e-13
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             L  V  LL R A   + +    T LH+AAR  +  + + L+   A +NA  ++ 
Sbjct: 24 MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.7 bits (151), Expect = 4e-13
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           +N L+ V  LL R         +G T LH+AA+     + ++L+ +G + NA   +G
Sbjct: 189 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.7 bits (151), Expect = 4e-13
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            N++E   +LL            G T LHLAA+  +  +V  L+   AN N   + G
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 6e-13
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             ++     LL R A       +G T LH+A    N  IV+ L+  G + ++    G
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 6e-13
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                +     L+     V+     G T LH+A+   N  +V+ L+   A++NA  + G
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 7e-13
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
              +E V+ALL + A    +   G T LH+AA+     + + L+   A+ NA  + G
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 8e-13
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                   V  LL   A+  L   +G+T LH+AAR  +   V AL+   A+   
Sbjct: 88  ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 141

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 1e-12
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                ++ V  LL   ADV      G + LH AA+  +  IV  L+  GA+ N +  +G
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 1e-12
 Identities = 17/59 (28%), Positives = 21/59 (35%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                 E    LL   A V        T LH AAR  +  +V+ L+   AN N     G
Sbjct: 55  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.0 bits (144), Expect = 4e-12
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                 E V  LLS+ A+  L + SG T LHL A+  +  +   LI  G  ++A
Sbjct: 253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 5e-11
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVF---GANINALCR 58
                 + V  LL   A    V + G T L +A R    ++   L V     + +    +
Sbjct: 352 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411

Query: 59  EG 60
             
Sbjct: 412 HR 413

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 15 SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          S          SG T LH+A+   +  IV+ L+  GA+ N    + 
Sbjct: 2  SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV 47

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.0 bits (149), Expect = 4e-13
 Identities = 20/54 (37%), Positives = 23/54 (42%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V+ N+ E   ALL    D EL D  GNT LHLA      A V  L       + 
Sbjct: 53  VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.9 bits (146), Expect = 1e-12
 Identities = 14/59 (23%), Positives = 18/59 (30%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           V     + V  LL   ADV  V   G +   L     +  I Q L         +  E 
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 4   NNRLECVVALLSRMAD------VELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              L  V  L            ++  + +G+T LHLA+      IV+ L+  GA++NA
Sbjct: 88  QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 145

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 2   VLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            ++  L  V  L+S  ADV   +  +G TALHLA   +NP +V  L+  GA++N +  +G
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.7 bits (143), Expect = 3e-12
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 7  LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          +E +  +   +A +   +N   T LHLA     P I +AL+  G +       G
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG 78

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 23 VDNSGNTALHLAARGKNPA----IVQALIVFGANINA 55
          +   G++ LHLA   +  A    +++ +    A +N 
Sbjct: 4  LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF 40

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.9 bits (149), Expect = 4e-13
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              N ++  V LL   A+ ++ +N   T L LAAR  +    + L+   AN + 
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 1e-12
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                   +  L++  ADV  VD+ G +ALH AA   N      L+  GAN + 
Sbjct: 100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.7 bits (133), Expect = 7e-11
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               E    LL   A+ ++ D+       +A    +  IV+ L  +    + 
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.3 bits (132), Expect = 9e-11
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2  VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
             +R +    LL   AD  + DN G T LH A       + Q LI   A +++A   +G
Sbjct: 33 ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 54.3 bits (132), Expect = 9e-11
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V  +       L+   A D++   + G T L LAAR     +++ LI   A++NA
Sbjct: 66  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.4 bits (127), Expect = 5e-10
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 5  NRLECVVALLSRMADVE-LVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          +    +   + + A +    D +G TALHLAAR       + L+   A+ N 
Sbjct: 2  DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 53

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.8 bits (151), Expect = 5e-13
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            ++ E +  L  ++ +V    N+G        +   PA+ +  +   A +  
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.5 bits (145), Expect = 3e-12
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            + + V  L+       + +  G TALHLA +       + L   G   + 
Sbjct: 30 KGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.8 bits (138), Expect = 2e-11
 Identities = 10/54 (18%), Positives = 20/54 (37%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +L N  +  +  +    DV + DN     L+L+ R     + + L+        
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.0 bits (136), Expect = 4e-11
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVF-----GANINALCR 58
              LE +  L+   A     D +  T L  A   +N   +  ++          ++   +
Sbjct: 150 PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 59  EG 60
           +G
Sbjct: 210 QG 211

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 2   VLNNRLECVVALLSRM-----ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
           +     E +  ++  +       ++  +  GN+ LH A       +    +  G ++N  
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240

Query: 57  CREG 60
             E 
Sbjct: 241 DNEH 244

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +    D+     +H+AAR      V+ LI  G +   
Sbjct: 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI 48

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 2/53 (3%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
                ++    L S           G   +HLA       +V AL+       
Sbjct: 61  CKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERG 111

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 23/82 (28%)

Query: 2   VLNNRLECVVALLSR---------------------MADVELVDNSGNTALHLAARGKNP 40
           V+ N+ + VVAL+                            +    G TALH        
Sbjct: 92  VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPE 151

Query: 41  --AIVQALIVFGANINALCREG 60
              +++ L+  GA+  A  +  
Sbjct: 152 YLEMIKILVQLGASPTAKDKAD 173

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 9e-07
 Identities = 7/70 (10%), Positives = 14/70 (20%), Gaps = 13/70 (18%)

Query: 4   NNRLECVVALLSRMADVELV-------------DNSGNTALHLAARGKNPAIVQALIVFG 50
              +     LL +     +                     +  AA      ++Q L    
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

Query: 51  ANINALCREG 60
             +      G
Sbjct: 314 DEVVRSLNTG 323

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 4/31 (12%), Positives = 8/31 (25%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLA 34
                     L+  A V     S   +  ++
Sbjct: 333 KAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 58.9 bits (144), Expect = 5e-13
 Identities = 23/52 (44%), Positives = 29/52 (55%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +  LE V  LL   ADV  VD  G T LHLAA   +  I + L+  GA++NA
Sbjct: 57  HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 58.9 bits (144), Expect = 6e-13
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            + + V  L++  ADV   D  G T L+LA    +  IV+ L+  GA++NA
Sbjct: 24 AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.0 bits (113), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
              LE    LL   ADV   D  G TA  ++    N  + + L 
Sbjct: 90  IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.6 bits (99), Expect = 3e-06
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 25 NSGNTALHLAARGKNPAIVQALIVFGANINA 55
          +     L  AAR      V+ L+  GA++NA
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNA 42

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.5 bits (148), Expect = 7e-13
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              ++ V  LLS+ +D+ + DN  N  LH AA      I + L+    +++A
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.2 bits (142), Expect = 4e-12
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +  ++    LL+   D+  V+  G++ LH+AAR      V   +   +++  
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL 205

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.2 bits (142), Expect = 4e-12
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             ++    L+   A+++       T L  AA   +   V+ LI  GA ++ 
Sbjct: 21 AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 56.3 bits (137), Expect = 2e-11
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINA 55
           NN LE V  L+   A V+  D  G+T LHLAA+  +  +VQ L+  G  ++N 
Sbjct: 54  NNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.9 bits (136), Expect = 4e-11
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 4   NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               E V  LLS    DV   D+ G T +  A   K+  +V+ L+  G++IN    E 
Sbjct: 87  KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE 144

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.3 bits (132), Expect = 1e-10
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
            NR +CVV  LSR +DV L +  G T L  A+          +     +
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 3e-08
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           + ++   +  + LH AA   +  I   L+  GANI+ 
Sbjct: 2  MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT 39

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 8e-13
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                 +  L++  ADV  VD+ G +ALH AA   N      L+  GAN +      
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.2 bits (147), Expect = 9e-13
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              N ++  V LL   A+ ++ +N   T L LAAR  +    + L+   AN + 
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.6 bits (143), Expect = 4e-12
 Identities = 9/51 (17%), Positives = 19/51 (37%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
               E    LL   A+ ++ D+       +A    +  IV+ L +   + +
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.6 bits (135), Expect = 5e-11
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
              +R +    LL   AD  + DN G T LH A       + Q LI   A +++A   +G
Sbjct: 65  ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.8 bits (133), Expect = 1e-10
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 4  NNRLECVVALLSRMADVE-LVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +    +   + + A +    D +G TALHLAAR       + L+   A+ N 
Sbjct: 33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.6 bits (130), Expect = 2e-10
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V  +       L+   A D++   + G T L LAAR     +++ LI   A++NA
Sbjct: 98  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 13/50 (26%)

Query: 19 DVELVDNSGNTALHLAAR-------------GKNPAIVQALIVFGANINA 55
          DV +    G T L +A+                 PA++   I  GA+++ 
Sbjct: 2  DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN 51

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.1 bits (147), Expect = 8e-13
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              L  VV L+   AD  L+D  G + +HLAA+  + +IV  LI  G +++ 
Sbjct: 86  QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.8 bits (146), Expect = 1e-12
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAA-RGKNPAIVQALIVFGANINA 55
                 V  L+++  DV+++D +G T L  AA R  +    + L+ F  ++N 
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.8 bits (141), Expect = 6e-12
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNS-GNTALHLAARGKNPAIVQALIVFGANINA 55
            + ++    LL+    V L D    NTALH A    N  ++  L+  GAN++A
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.8 bits (141), Expect = 6e-12
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              E    L+    DV   D    T LH AA      +V+  I  GA ++ 
Sbjct: 19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.8 bits (141), Expect = 7e-12
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           VL      +  LL   A+V+  +  G +AL LA + KN  ++  L         
Sbjct: 185 VLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 3e-11
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 4   NNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           NNR++ V   +S+ A V+ +     +T LH A R  + ++V  L+ +GA+ + +  EG
Sbjct: 52  NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.1 bits (108), Expect = 2e-07
 Identities = 5/41 (12%), Positives = 15/41 (36%)

Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          +  +D+     +  A +       + L+  G ++    +E 
Sbjct: 2  MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKEN 42

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.8 bits (146), Expect = 8e-13
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +  +    L      V+ VD  GNT L++A    +  I +ALI  GA+IN 
Sbjct: 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.1 bits (134), Expect = 4e-11
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREG 60
           NN +E   AL+ R AD+ L ++  ++    A       I+  ++     ++N   R G
Sbjct: 49  NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG 106

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 1e-10
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 4   NNRLECVVALLSR-MADVELVDNSGNTALHLAARGKNP-----AIVQALIVFGANINALC 57
              ++ V  LL     D++  ++ G TAL  A   +        IV+ L+  GA+ +   
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175

Query: 58  REG 60
             G
Sbjct: 176 NSG 178

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.4 bits (119), Expect = 6e-09
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 4   NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFG-ANINA 55
             R E +  +L     D+   +  G  AL  AA   +   V+ L+  G  +I+ 
Sbjct: 82  QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.2 bits (116), Expect = 1e-08
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
               + V  L+   AD  + DNSG TA+  A +     I + L 
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.5 bits (109), Expect = 2e-07
 Identities = 3/32 (9%), Positives = 8/32 (25%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                 L  A +     + + L      ++ 
Sbjct: 3  TYEVGALLEAANQRDTKKVKEILQDTTYQVDE 34

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.6 bits (143), Expect = 9e-13
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                 V  LL   ADV   D    TALH A    +  +V+ LI +GA+++ 
Sbjct: 77  EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.6 bits (143), Expect = 1e-12
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                   LL      +       T LH+AA   +  IV+ L+  GA++NA
Sbjct: 44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.5 bits (135), Expect = 2e-11
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            + + V  L++  A     D  G + LHLAA+  + +  + L+  G + +A
Sbjct: 12 AGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.8 bits (110), Expect = 8e-08
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
             +N  E V  L+   ADV        TA  ++    N  + + L
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.2 bits (98), Expect = 4e-06
 Identities = 8/29 (27%), Positives = 10/29 (34%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGANINA 55
              L  AAR      V+ L+  GA    
Sbjct: 2  LGKKLLEAARAGQDDEVRILMANGAPFTT 30

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.6 bits (148), Expect = 9e-13
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 2  VLNNRLECVVALLSRMADVELV---DNSGNTALHLAARGKNPAIVQALIVFGANINALCR 58
          V++     +  LL   A  E +   ++ G TALHLAA     + V+ L   GA +    R
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76

Query: 59 EG 60
           G
Sbjct: 77 GG 78

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 14/59 (23%), Positives = 18/59 (30%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           V       +  LL   AD       G T L  A    NP + + L   GA       + 
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.5 bits (145), Expect = 2e-12
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N   E           +E  +  G+T LH+A   K+  +V+ L   GA++N 
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 3e-12
 Identities = 14/76 (18%), Positives = 23/76 (30%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
            +      V  L +  A V + +  G+TALHLA R +       L+    +      +  
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

Query: 62  FQGPDCCNIFKRWRTL 77
                 C         
Sbjct: 113 LTQSQDCTPDTSHAPA 128

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 58.7 bits (143), Expect = 4e-12
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   VLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           V++   E V  L    AD+   +   G T LHLA   +  ++++ L+  GA+  A    G
Sbjct: 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 3/49 (6%), Positives = 9/49 (18%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFG 50
           +L         L +  A          +    +    +         + 
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGAN---INA 55
             V   G+TALHLA   ++   +  L+ F A    ++ 
Sbjct: 2  FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL 40

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 6/71 (8%), Positives = 11/71 (15%), Gaps = 14/71 (19%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNT--------------ALHLAARGKNPAIVQALIVF 49
                C   LL          +                  A   +              +
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147

Query: 50  GANINALCREG 60
              + A   +G
Sbjct: 148 RLQLEAENYDG 158

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 9e-13
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINA 55
                L  +   L     V  +D +G+TAL+ A  G +  IV+ L       +N 
Sbjct: 81  AKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               + V  L ++   ++   +  G+TALH AA      IVQ L+  GA  + 
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 58.0 bits (141), Expect = 5e-12
 Identities = 9/57 (15%), Positives = 19/57 (33%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               + V  LL++ A  +L +     A  +A      ++++      A       E 
Sbjct: 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 4e-08
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 13  LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            L     V     S +  LH AA+  N + ++  +     +N L + G
Sbjct: 59  GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 4/52 (7%), Positives = 12/52 (23%)

Query: 3  LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
                    L     D+  + +  +T            ++ +  V     +
Sbjct: 21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAES 72

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 5/37 (13%), Positives = 9/37 (24%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             G   +  A     P     L +   +I  +    
Sbjct: 9  VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMS 45

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 2/33 (6%), Positives = 5/33 (15%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAAR 36
                 +       A   L +         +  
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.9 bits (144), Expect = 1e-12
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            NR+  V  LL   ADV   D  G   LH A    +  + + L+  GA +N 
Sbjct: 52  YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 56.2 bits (137), Expect = 1e-11
 Identities = 16/57 (28%), Positives = 22/57 (38%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               E    L+   A V + D    T LH AA      I + L+  GA+     R+G
Sbjct: 85  YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 52.0 bits (126), Expect = 4e-10
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 4  NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             +E V  L +    +   ++   +T LH AA     ++V+ L+  GA+++A
Sbjct: 18 AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.8 bits (115), Expect = 1e-08
 Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
               + E    LL   AD    +  GNT L L   G +  I   L    A
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG-DTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 39.7 bits (94), Expect = 2e-05
 Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 1/34 (2%)

Query: 23 VDNSGNTALHLAARGKNPAIVQALIVF-GANINA 55
           ++  +  L  AA+  +   V+ L      N   
Sbjct: 4  GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD 37

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.2 bits (147), Expect = 1e-12
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             +   E V+ LL R AD+   +  G TALH A    N  +V+ L+  GANIN 
Sbjct: 48  CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               E +  L+    DV + D  G T LH AA        + L+    ++ A
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.5 bits (140), Expect = 1e-11
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            +++ ++ V  L+   A++   DN G   LH AA      I + LI  GA++ A+  EG
Sbjct: 81  CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               +    L S   +      SG TALH+AA      +++ LI    ++N    +G
Sbjct: 176 IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             + E    L+  + D+E V+  G TA  +A       + +         + 
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI-VFGANINALCREGTF 62
              L+    L+S+ A V  V++ G+T L +A       ++Q  +   G +I A  +E   
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175

Query: 63  QG 64
             
Sbjct: 176 IM 177

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.1 bits (113), Expect = 6e-08
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 3  LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                 +   + +    ++  + G   L   + G +   V  L+  GA+IN 
Sbjct: 17 WIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSG-DTEEVLRLLERGADINY 68

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.0 bits (92), Expect = 5e-05
 Identities = 4/42 (9%), Positives = 12/42 (28%)

Query: 20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
          +++ D        L     +   ++  +V          +G 
Sbjct: 1  MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA 42

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 38.6 bits (91), Expect = 5e-05
 Identities = 7/52 (13%), Positives = 10/52 (19%), Gaps = 6/52 (11%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
               E +   ++R             A     R       Q L     N   
Sbjct: 149 EAMEELLQNEVNR------QGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.2 bits (139), Expect = 2e-12
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            + + V  L++  ADV   D +G+T LHLAAR  +  +V+ L+  GA++ A  + G
Sbjct: 34 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.1 bits (131), Expect = 2e-11
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
          ++       L+ R + +    +     L  AAR      V+ L+  GA++ A
Sbjct: 4  HHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAA 52

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 37.6 bits (88), Expect = 5e-05
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
           N  LE V  LL   ADV   D  G TA  ++    N  + + L
Sbjct: 67  NGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 2e-12
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               + V  LL    D    D+ GNTAL+ A    N   V+  +     +    + G
Sbjct: 72  LEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.4 bits (137), Expect = 3e-11
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNT-ALHLAARGKNPAIVQALIVFGANINA 55
           N  ++ ++ LL  M      ++      + LA   K+  ++QAL  +  NI +
Sbjct: 171 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS 223

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 10 VVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +       D    D  G++A + A    N  +V  L+  GA  N 
Sbjct: 14 QLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2  VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          + +N +  V  LL+  A   L++N     LH AA  ++  IV+ L+  G + +    +G
Sbjct: 39 IADNNVRLVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.3 bits (129), Expect = 3e-10
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V+ N +  V   LS +           + +H+  +  +  ++  L+ +  + N 
Sbjct: 137 VMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.8 bits (120), Expect = 6e-09
 Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSG-NTALHLAARGKNPAIVQALIVFGANINA 55
           +  ++ V   + +   +     +G  T+ + A    + +IV   +    +   
Sbjct: 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD 157

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 7/52 (13%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N  +E + AL     ++        +A        +  I + +I       +
Sbjct: 205 NKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMIIEKHVEYKS 249

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 5/55 (9%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
           VL +  E    ++ +  + +    + +  +       +  I +   +    +N +
Sbjct: 229 VLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV-KNNKLDEIISKNKELRLMYVNCV 282

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI---VFGANINALCR 58
           VL  R   V  L+   AD  + + S  +ALH AA  ++  ++  ++       +I  L R
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

Query: 59  EG 60
            G
Sbjct: 234 NG 235

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.7 bits (135), Expect = 6e-11
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              + +  V  L+    ++ +  D  G T + LAA+     +V  LI  GA++ A
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 4   NNRLECVVALLSRM--------ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N+  E    L+           ADV  +D   NT L LA   +   +V  L+  GA+   
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.8 bits (130), Expect = 3e-10
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANI 53
             R+E V+ L+ + A VE VD + +TA  LA    +  IV          
Sbjct: 323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N          + +      +      LH  A G + AI + +     NI  
Sbjct: 71  NGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAG-SYAITEPITRESVNIID 121

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.7 bits (122), Expect = 4e-09
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 2   VLNNRLECVVALLSRM---ADVELVDNSGNTALHLAARGKN---PAIVQALIVFGANINA 55
             N     +V +L+      D+E +D +G TAL + A  +     A  + L+  GA ++ 
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 2   VLNNRLECVVA---LLSRMADV--------ELVDNSGNTALHLAARGKNPAIVQALIV-F 49
             N   + V +   L+ + A V        +     G TALH AA+  N  IV+ L+   
Sbjct: 243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302

Query: 50  GANINA 55
           G+N + 
Sbjct: 303 GSNKDK 308

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV--------FGANINA 55
                    +     ++        T LH  A   +    + LIV         GA++NA
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 2/43 (4%), Positives = 5/43 (11%)

Query: 18 ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               + +             N  +                E 
Sbjct: 52 RQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPES 94

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.0 bits (144), Expect = 2e-12
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 2   VLNNRLECVVALLSRM--ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                LE V +L  R    D+  + N G T LHLA   K   + Q LI  GA++  
Sbjct: 80  CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 56.3 bits (137), Expect = 2e-11
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 2   VLNNRLECVVALLSRMADV---ELVDNSGNTALHLAARGKNPAIVQALI--VFGANINA 55
           V     E    LLS+M +V   +  D+SG T  H+A    N  +V++L       ++N 
Sbjct: 44  VSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 56.3 bits (137), Expect = 2e-11
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 2  VLNNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           + N    V  LL S+ + +   D  G   LH +   +   I   L+    N+N 
Sbjct: 10 CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.6 bits (130), Expect = 2e-10
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN-INA 55
               E    L+   A V + D      LH AA   +  +++ L   G + +N 
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.1 bits (126), Expect = 7e-10
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 4   NNRLECVVALLSR-MADVELVDNSGNTALHLAARGKNPAIVQALI-VFGANINA 55
              L+ +  L     + V   D  G T L  A    +      L+  +GA  + 
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 4   NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALI 47
               +  V L+ +  A+ +LVDN G  A  +A   +   + +  +
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.2 bits (90), Expect = 9e-05
 Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 27 GNTALHLAAR-GKNPAIVQALIVFGANINA 55
           N  LH A    +   + + L    + +  
Sbjct: 2  SNYPLHQACMENEFFKVQELLHSKPSLLLQ 31

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 2e-12
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V  +R + V  LL   AD  L   +G T   LAA   +  +++  +  GA++N 
Sbjct: 47  VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.0 bits (144), Expect = 3e-12
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              ++ +   LS+ ADV   D  G TA   AA       ++ L   GAN+N 
Sbjct: 82  AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.3 bits (142), Expect = 5e-12
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           V    L  V  LL +   ++   D+ G TAL LA   K   I + L   GA+ + 
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.6 bits (135), Expect = 6e-11
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINA 55
            ++       LL   ADV +    G T L LA   K+  +VQ L+      IN 
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.8 bits (133), Expect = 1e-10
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2  VLNNRLECVVALLSRMADVELVDNS-GNTALHLAARGKNPAIVQALIVFGANINA 55
          V N  ++ V  LL   A+V   +   G T LH A +     IV+ L+  GA+   
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.2 bits (129), Expect = 4e-10
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 4   NNRLECVVALLSRM-ADVELVDNSGNTALHLAAR----GKNPAIVQALIVFGANINA 55
              +E +  LL  M ADV   DN G  AL  A          AI   L+  GA++N 
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.2 bits (121), Expect = 4e-09
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 4   NNRLECVVALLSRMADVELVDN----------SGNTALHLAARGKNPAIVQALIV-FGAN 52
             +++ +  L  R A+V L              G TAL  AA   +  +++ L+   GA+
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 53  INALCREG 60
           +NA    G
Sbjct: 175 VNACDNMG 182

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 24 DNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              N  L  A + ++  +VQ L+  GAN+N 
Sbjct: 2  AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNF 33

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.0 bits (140), Expect = 6e-12
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              E    +L+  +     D    TALH A    +  IV+ L+  G  +N 
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 21/59 (35%), Positives = 31/59 (52%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                 E V  LL     V   D++G + LH+AA      IV+AL+V GA++NA+ + G
Sbjct: 48  CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.5 bits (105), Expect = 5e-07
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
             R+E    L+++ A + + +    T L +A  G    ++   +  G   +
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG--LILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 20/57 (35%), Positives = 25/57 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               E V ALL + A V  V+ +G T LH AA      I   L+  GAN +A     
Sbjct: 83  AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            NR E  V LL   A+ +  D+   TA+H AA   N  +V  L+ + A+ N    EG
Sbjct: 116 KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
              L+ V  LL   A   + D  GNT LHLA   +     + L+  GA+I    +E 
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE 205

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 5/31 (16%), Positives = 11/31 (35%)

Query: 25 NSGNTALHLAARGKNPAIVQALIVFGANINA 55
           S     +LA  GK   + + ++   +    
Sbjct: 5  VSNIMICNLAYSGKLDELKERILADKSLATR 35

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 5e-11
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 13  LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
                  + + D  G TAL    R + P  ++ +  +    N 
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 9e-11
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 3   LNNRLECVVALLSRMADVELVDNSGNTALHLAARG------KNPAIVQALIVFGANINAL 56
              R +  + L+++ AD++     G T      +G          + +  +  GA+I AL
Sbjct: 51  DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL 110

Query: 57  CREG 60
            +  
Sbjct: 111 YKPY 114

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 5/56 (8%), Positives = 14/56 (25%), Gaps = 7/56 (12%)

Query: 7   LECVVALLSRMADVELVDNSGNTALHLAARG------KNPAIVQALIV-FGANINA 55
            E     L + AD+  +       +            +   + + +    G  +  
Sbjct: 94  TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 7e-06
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 4  NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNP----AIVQALIVFGANINALCRE 59
              E  + L  +  + +      +  L+   R  N      I   LI  GA+I +  +E
Sbjct: 16 LGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKE 74

Query: 60 G 60
          G
Sbjct: 75 G 75

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.8 bits (134), Expect = 6e-11
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 1   MVLNNRLECVVALLSRMADV-ELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
              +   E   A  +   ++   VD  GNT LH      N  +V+ L+  G+N       
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 163

Query: 60  G 60
           G
Sbjct: 164 G 164

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.0 bits (119), Expect = 6e-09
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           ++ LE +         +   D++G+T L++AAR  N +IV AL+ +GA+   
Sbjct: 260 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 311

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 4/58 (6%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQA----LIVFGANINA 55
                LE V  L+   ++    DN G + L  A +  N          L      +  
Sbjct: 139 TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.9 bits (103), Expect = 9e-07
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAA 35
                +  V ALL   AD  + + SG   +   A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 4   NNRLECVVALLSRMADVELV-----------DNSGNTALHLAARGKNPAIVQALIVFGAN 52
           N + + +  LL      + +              G TALH+A   +N  +V  L+  GA+
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 53  INALCREGTFQGPDCCNIFKRWRT 76
           + A      F+       F     
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGEL 150

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 17/69 (24%)

Query: 4   NNRLECVVALLSRMADVELVDNS--------------GNTALHLAARGKNPAIVQALIVF 49
              +  V  L+   ADV+   N               G   L LAA     AIV+ L+  
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170

Query: 50  G---ANINA 55
               A+I+A
Sbjct: 171 SWQPADISA 179

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 4   NNRLECVVALLSR---MADVELVDNSGNTALHLAARGKN---------PAIVQALIVFGA 51
            N+L  V  LL      AD+   D+ GNT LH      +          ++   +++ GA
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 52  NIN 54
            ++
Sbjct: 218 KLH 220

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 9/48 (18%), Positives = 17/48 (35%)

Query: 7   LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANIN 54
           L     L   +   E+ +  G T L LAA      ++  ++    +  
Sbjct: 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 2  VLNNRLECVVALLSRMADVELVDNS-GNTALHLA---ARGKNPAIVQALIVFGANINAL 56
           L + L  +     R+ D E  D   G T L  A           +  L+      ++L
Sbjct: 28 ELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +  L+    L   +   E+ ++ G T L LAA+     I + ++    +  A
Sbjct: 198 DGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 4   NNRLECVVALLSR-----------MADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
           +    C++ LL              A        G++ALH+A   ++   V+ L+  GA+
Sbjct: 56  DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115

Query: 53  INALCREGTFQ 63
           ++       FQ
Sbjct: 116 VHLRACGRFFQ 126

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 2   VLNNRLECVVALLSRMADVELVDNS-------------GNTALHLAARGKNPAIVQALIV 48
           +    L+CV  L+   ADV L                 G   L LAA  K   +V  L+ 
Sbjct: 98  IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157

Query: 49  FG---ANINALCREG 60
                A++ A    G
Sbjct: 158 NPHQPASLEATDSLG 172

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 19/76 (25%)

Query: 4   NNRLECVVALLSRM---ADVELVDNSGNT----------------ALHLAARGKNPAIVQ 44
             + + V  LL      A +E  D+ GNT                AL +        +  
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205

Query: 45  ALIVFGANINALCREG 60
            L            +G
Sbjct: 206 RLCPTVQLEEISNHQG 221

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 4   NNRLECVVALLSR-----------MADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
             R + +  LL              +    V   G TALH+A   +    V+ L+  GA+
Sbjct: 59  AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118

Query: 53  INALCREGTFQGPDCCNIFKRWRT 76
           ++A  R   FQ  D    F     
Sbjct: 119 VHAQARGRFFQPKDEGGYFYFGEL 142

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 7e-08
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 17/71 (23%)

Query: 2   VLNNRLECVVALLSRMADVELVDNS--------------GNTALHLAARGKNPAIVQALI 47
           +       V  L+ + ADV                    G   L LAA    P IV  L 
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160

Query: 48  VFG---ANINA 55
             G   A++  
Sbjct: 161 ENGHKQADLRR 171

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 12/66 (18%)

Query: 2   VLNNRLECVVALLSR---MADVELVDNSGNTALHLAARGKN---------PAIVQALIVF 49
              N+   V  L       AD+   D+ GNT LH      +           +   L++ 
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK 207

Query: 50  GANINA 55
            A +  
Sbjct: 208 CAKLFP 213

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 7   LECVVALLSRMADV-------ELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
            +    LL + A +        L++N G + L +AA+     I Q +I       A
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 9/51 (17%), Positives = 19/51 (37%)

Query: 5   NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           + L+ +  LL+    V+++      A  LAA   +  ++  L         
Sbjct: 106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 6e-08
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 11  VALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           +  +  +A    +    N  L LA R  N      L+   + +  
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL 347

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 2/54 (3%)

Query: 4   NNRLECVVALLSRMADVELVD--NSGNTALHLAARGKNPAIVQALIVFGANINA 55
           N  L  +  L        +         A  LAA   +  ++  L         
Sbjct: 138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 4   NNRLECVVALLSRMADVEL--VDNSGNTALHLAARGKN-PAIVQALIVFGANINA 55
           N  L  +  L           +      A   AA G+    ++  L+     +  
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 13  LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           ++     ++     GNTALH AA    P  ++ L+   A +  +   G
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 259

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
            L N+ +C+  LL   A V  V+ +G TAL +A +  +    + L 
Sbjct: 234 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 5   NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             L  V  L+    +++     G+TALH      N   ++ L+   A+I      G
Sbjct: 183 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 238

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
            L +  EC+  LL   A +E+ + SG T L +A R K+    + L             G 
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT--------QALSGR 264

Query: 62  FQGPDCCNIFKRWRTL 77
           F      ++   WR L
Sbjct: 265 F--NSHVHVEYEWRLL 278

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               N L     LL   A+V   D++G   LH A    +  +    +  GA++ A   EG
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 16/45 (35%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
            +          L R AD+   D+ G   L +A    N  IV  L
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 7   LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           L  V  ++     ++     GNTALH AA    P  ++ L+   A +  +   G
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 240

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 2   VLNNRLECVVALLSRMADVELV------DNSGNTALHLAAR---GKNPAIVQALIVFGAN 52
           + N  L  V+   +   D                 LHLA +     +  +V  +I  G +
Sbjct: 140 ICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 199

Query: 53  INALCREG 60
           ++A   +G
Sbjct: 200 LDAKAADG 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.85
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.8
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.78
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.77
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.76
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.76
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.76
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.76
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.76
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.76
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.75
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.75
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.75
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.75
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.74
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.74
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.74
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.74
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.74
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.73
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.73
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.73
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.73
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.73
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.73
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.72
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.72
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.72
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.72
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.72
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.72
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.72
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.72
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.72
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.72
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.71
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.71
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.71
2etb_A	256	Transient receptor potential cation channel subfam	99.71
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.71
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.71
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.71
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.7
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.7
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.7
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.7
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.7
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.69
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.69
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.69
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.69
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.69
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.69
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.69
2pnn_A	273	Transient receptor potential cation channel subfa	99.68
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.68
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.68
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.68
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.68
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.68
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.68
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.68
2rfa_A	232	Transient receptor potential cation channel subfa	99.68
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.68
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.67
2rfa_A	232	Transient receptor potential cation channel subfa	99.67
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.67
2etb_A	256	Transient receptor potential cation channel subfam	99.67
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.66
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.66
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.66
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.66
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.66
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.66
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.66
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.65
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.65
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.64
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.64
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.64
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.64
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.64
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.64
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.63
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.63
2pnn_A	273	Transient receptor potential cation channel subfa	99.63
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.63
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.62
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.61
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.61
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.61
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.6
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.6
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.59
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.57
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.57
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.54
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.54
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.54
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.52
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.45
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.44
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.29
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.21

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=9.3e-21  Score=92.96  Aligned_cols=80  Identities=34%  Similarity=0.361  Sum_probs=70.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||+++|+. ....+.+..+
T Consensus         9 A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~-~~~~~~~~~L   87 (93)
T 1n0q_A            9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLL   87 (93)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999997 3444444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus        88 l   88 (93)
T 1n0q_A           88 L   88 (93)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.85  E-value=1e-20  Score=101.97  Aligned_cols=80  Identities=30%  Similarity=0.300  Sum_probs=61.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.|||++|+. .+..+.+..+
T Consensus        77 A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~-~g~~~iv~~L  155 (169)
T 4gpm_A           77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE-HGNEEVVKLL  155 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            356778888888888888888888888888888888888888888888888888888888888888886 3333333333


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       156 l  156 (169)
T 4gpm_A          156 E  156 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.81  E-value=3.2e-19  Score=96.13  Aligned_cols=68  Identities=31%  Similarity=0.357  Sum_probs=35.7

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.++++.|++.|++++.+|..|+||+++|+..++.++++.|+..|++++.++.+|.|||++|+.
T Consensus        12 a~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A           12 AENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHH
Confidence            45566666666666666655555555555544444444444444444444444444444444444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=1.9e-19  Score=90.76  Aligned_cols=79  Identities=27%  Similarity=0.270  Sum_probs=70.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+..|++++.+|..|.||||+|+..++.+++++|+..|++++.+|..|.||+++|+.  .++.+++.+
T Consensus        31 A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~--~~~~~~~~~  108 (110)
T 2zgd_A           31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID--NGNEDLAEI  108 (110)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH--HTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH--cCCHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999996  444455444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       109 L  109 (110)
T 2zgd_A          109 L  109 (110)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.80  E-value=6.1e-19  Score=90.23  Aligned_cols=81  Identities=23%  Similarity=0.198  Sum_probs=70.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+..|++++..+..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+. ......+..+
T Consensus        14 A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~-~~~~~~v~~L   92 (123)
T 3aaa_C           14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY-EGHVSCVKLL   92 (123)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus        93 l~   94 (123)
T 3aaa_C           93 LS   94 (123)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.78  E-value=2.1e-18  Score=89.64  Aligned_cols=68  Identities=19%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCC-CChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNS-GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+. ++.+++++|+.+|++++.++.. |.||||+|+..++.+++++|++.|++++..+..|.||+++|+.
T Consensus        52 A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  120 (136)
T 1d9s_A           52 MMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE  120 (136)
T ss_dssp             STT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHH
T ss_pred             HHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            455 7788888888888888887777 7888888888888888888888888888888888888888886

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.78  E-value=2e-18  Score=89.65  Aligned_cols=80  Identities=25%  Similarity=0.172  Sum_probs=62.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+. ......+..+
T Consensus        21 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~-~~~~~~v~~L   99 (136)
T 2jab_A           21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF-IGHLEIAEVL   99 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-HTCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            456788888888888888888888888888888888888888888888888888888888888888886 3334444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       100 l  100 (136)
T 2jab_A          100 L  100 (136)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.77  E-value=2.7e-18  Score=89.22  Aligned_cols=81  Identities=21%  Similarity=0.186  Sum_probs=65.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+. .+....+..+
T Consensus        17 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~L   95 (137)
T 3c5r_A           17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK-NGHVDIVKLL   95 (137)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            356778888888888888888888888899999998889999998888888888888888999999886 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus        96 l~   97 (137)
T 3c5r_A           96 LS   97 (137)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.77  E-value=1.9e-18  Score=89.79  Aligned_cols=78  Identities=31%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..++.+++++|++.|++++..|..|.||||+|+..++.+++++|++.|++++..|..|.||+++|+. .+..+.+..
T Consensus        54 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~-~~~~~~~~~  131 (136)
T 2jab_A           54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG-NGNEDLAEI  131 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHH-CCCHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999996 333333333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=1.9e-18  Score=99.21  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      |+.+++++|+.+|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.|||++|+. .+....+..+.
T Consensus       183 ~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~-~~~~~~v~~Ll  258 (278)
T 1dcq_A          183 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR-LKHEHCEELLT  258 (278)
T ss_dssp             TTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHH
T ss_pred             chHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHH-cCCHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999997 33344333333

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.76  E-value=1.4e-17  Score=87.97  Aligned_cols=80  Identities=21%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..|+.+++++|+..|++++.+|..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+. .+....+..+.
T Consensus        43 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll  121 (156)
T 1bd8_A           43 MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ-EGHTAVVSFLA  121 (156)
T ss_dssp             SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH-HTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH-hChHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999997 44444444444


Q ss_pred             c
Q psy12915         82 G   82 (91)
Q Consensus        82 ~   82 (91)
                      +
T Consensus       122 ~  122 (156)
T 1bd8_A          122 A  122 (156)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.76  E-value=8.8e-18  Score=89.49  Aligned_cols=81  Identities=23%  Similarity=0.153  Sum_probs=65.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+++|++++..+..|+||||+|+..++.+++++|++.|++++..+..|.||||+|+. .+....+..+
T Consensus        49 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~L  127 (165)
T 3twr_A           49 AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA-KGKYEICKLL  127 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            356788889999999988888888888899999999999999999999999998888889999999886 3444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      .+
T Consensus       128 l~  129 (165)
T 3twr_A          128 LQ  129 (165)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.76  E-value=2.4e-18  Score=88.01  Aligned_cols=69  Identities=23%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..++.+++++|+..|++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||+++|..
T Consensus        47 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            466889999999999999999999999999999999999999999999999999999999999999963

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.76  E-value=4.6e-19  Score=101.33  Aligned_cols=69  Identities=28%  Similarity=0.298  Sum_probs=53.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|++.|++++.+|..|.|||++|+.
T Consensus       159 A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          159 ACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             HHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred             HHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence            355677777777777777777777777788888877778888888777777777777778888887764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.76  E-value=6.5e-18  Score=94.63  Aligned_cols=81  Identities=30%  Similarity=0.247  Sum_probs=67.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+..|++++..|..|+||||+|+..++.+++++|++.|++++..|..|.||||+|+. .+....+..+
T Consensus        28 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~-~g~~~~v~~L  106 (229)
T 2vge_A           28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS-CNDTVICMAL  106 (229)
T ss_dssp             HHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            456788899999999999998888889999999999999999999999999999999999999999997 4445555555


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus       107 l~  108 (229)
T 2vge_A          107 VQ  108 (229)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.76  E-value=1.2e-17  Score=88.42  Aligned_cols=79  Identities=18%  Similarity=0.067  Sum_probs=68.8

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCCh-HHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNT-ALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      ..|+.+++++|+.+|++++.++..|+| |||+|+..++.+++++|++.|++++.++..|.|||++|+. .+....+..+.
T Consensus        53 ~~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~-~~~~~~v~~Ll  131 (156)
T 1bi7_B           53 MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE-LGHRDVARYLR  131 (156)
T ss_dssp             CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH-HTCHHHHHHHS
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-hCHHHHHHHHH
Confidence            478999999999999999999999998 9999999999999999999999999999999999999996 34444444444


Q ss_pred             c
Q psy12915         82 G   82 (91)
Q Consensus        82 ~   82 (91)
                      +
T Consensus       132 ~  132 (156)
T 1bi7_B          132 A  132 (156)
T ss_dssp             S
T ss_pred             H
Confidence            3

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.75  E-value=4e-18  Score=89.99  Aligned_cols=80  Identities=19%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+. .+....+..+
T Consensus        41 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~L  119 (153)
T 1awc_B           41 AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELL  119 (153)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            355677888888888888888877788888888888888888888888888888888888888888886 3334444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       120 l  120 (153)
T 1awc_B          120 I  120 (153)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=2.1e-18  Score=87.24  Aligned_cols=81  Identities=33%  Similarity=0.382  Sum_probs=71.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+..|++++..|..|.||||+|+..++.+++++|++.|++++..+..|.|||++|+. ......+..+
T Consensus        16 A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~-~~~~~~~~~L   94 (115)
T 2l6b_A           16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK-NGHHEIVKLL   94 (115)
T ss_dssp             HHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-CCCHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus        95 l~   96 (115)
T 2l6b_A           95 DA   96 (115)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.75  E-value=1.2e-17  Score=90.09  Aligned_cols=68  Identities=31%  Similarity=0.417  Sum_probs=47.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus        47 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~  114 (179)
T 3f6q_A           47 CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF  114 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            45566667777777776666666666777777777777777777777777777777777777777765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.75  E-value=9.2e-18  Score=88.58  Aligned_cols=67  Identities=25%  Similarity=0.240  Sum_probs=36.6

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..|+.+++++|+.+|++++.+|..|.||||+|+..++.+++++|++.|++++.++..|.||+++|+.
T Consensus        76 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  142 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID  142 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555555555553

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.75  E-value=5.1e-18  Score=97.15  Aligned_cols=80  Identities=26%  Similarity=0.252  Sum_probs=62.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+..|++++.+|..|+||||+|+..++.+++++|+. .|++++.+|..|.||+++|+. .+....+..
T Consensus       190 A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~-~g~~~iv~~  268 (276)
T 4hbd_A          190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD-AGQSEIASM  268 (276)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH-HTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH-cCCHHHHHH
Confidence            356778888888888888888888888888888888888888888888 788888888888888888886 333444444


Q ss_pred             Hh
Q psy12915         80 LA   81 (91)
Q Consensus        80 ~~   81 (91)
                      ++
T Consensus       269 Ll  270 (276)
T 4hbd_A          269 LY  270 (276)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.75  E-value=4.9e-18  Score=95.40  Aligned_cols=81  Identities=26%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+..|++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+. .+....+..+
T Consensus        44 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~-~~~~~~v~~L  122 (239)
T 1ycs_B           44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNNVQVCKFL  122 (239)
T ss_dssp             HHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus       123 l~  124 (239)
T 1ycs_B          123 VE  124 (239)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.74  E-value=1.7e-18  Score=89.97  Aligned_cols=81  Identities=25%  Similarity=0.224  Sum_probs=71.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+.+|++++..|..|.||||+|+..++.+++++|++.|++++.+|..|.||+++|..  .+...++.+
T Consensus        50 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~--~~~~~~l~~  127 (137)
T 3c5r_A           50 ACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD--ESMKSLLLL  127 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCC--HHHHHHHSC
T ss_pred             HHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh--ccHHHHHhh
Confidence            456789999999999999999999999999999999999999999999999999999999999999994  666666555


Q ss_pred             hcC
Q psy12915         81 AGG   83 (91)
Q Consensus        81 ~~~   83 (91)
                      ...
T Consensus       128 l~~  130 (137)
T 3c5r_A          128 PEK  130 (137)
T ss_dssp             C--
T ss_pred             ccc
Confidence            443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.74  E-value=2.8e-18  Score=89.15  Aligned_cols=80  Identities=20%  Similarity=0.157  Sum_probs=70.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccC-CCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE-GTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~-g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+++|++++.++..|+||||+|+. ++.+++++|++.|++++..+.. |.||||+|+. ....+.+..
T Consensus        19 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~~~~~~v~~   96 (136)
T 1d9s_A           19 AAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVV   96 (136)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH-HTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH-cCCHHHHHH
Confidence            467899999999999999999999999999999999 9999999999999999999999 9999999997 444444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +++
T Consensus        97 Ll~   99 (136)
T 1d9s_A           97 LHR   99 (136)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.74  E-value=2.9e-17  Score=87.11  Aligned_cols=79  Identities=29%  Similarity=0.286  Sum_probs=60.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+. |+.+++++|+..|++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+. .+....+..+
T Consensus        45 A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~L  122 (162)
T 1ihb_A           45 MKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK-EGHLRVVEFL  122 (162)
T ss_dssp             CCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            344 78888888888888888888888888888888888888888888888888888888888888886 3333333333


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       123 l  123 (162)
T 1ihb_A          123 V  123 (162)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.74  E-value=2.2e-17  Score=88.46  Aligned_cols=68  Identities=25%  Similarity=0.199  Sum_probs=39.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus        44 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  111 (172)
T 3v30_A           44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR  111 (172)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.74  E-value=1.6e-17  Score=89.01  Aligned_cols=69  Identities=26%  Similarity=0.292  Sum_probs=66.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+.+|++++..|..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+.
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  144 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA  144 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999997

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.74  E-value=2.3e-17  Score=88.98  Aligned_cols=69  Identities=22%  Similarity=0.258  Sum_probs=66.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+.+|++++..|..|.||||+|+..++.+++++|++.|++++..+..|.||+++|..
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  147 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA  147 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999996

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.74  E-value=1.7e-17  Score=101.42  Aligned_cols=80  Identities=19%  Similarity=0.114  Sum_probs=70.7

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..|+.+++++|+.+|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+. .+....+..+.
T Consensus       182 a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~-~~~~~~~~~Ll  260 (497)
T 3lvq_E          182 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK-KHHKECEELLE  260 (497)
T ss_dssp             CCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHH-TTCHHHHHHHH
T ss_pred             cccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999997 34444444443


Q ss_pred             c
Q psy12915         82 G   82 (91)
Q Consensus        82 ~   82 (91)
                      +
T Consensus       261 ~  261 (497)
T 3lvq_E          261 Q  261 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.73  E-value=3.2e-17  Score=87.78  Aligned_cols=68  Identities=34%  Similarity=0.303  Sum_probs=35.9

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus        22 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           22 ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.73  E-value=1.7e-17  Score=92.14  Aligned_cols=80  Identities=20%  Similarity=0.158  Sum_probs=60.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVF-GANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.++++.|+..|++++..|..|+||||+|+..++.+++++|+.. |++++..|..|.||||+|+. .+....+..
T Consensus        80 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~-~~~~~~v~~  158 (222)
T 3ehr_A           80 AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW-KGYADIVQL  158 (222)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH-HTCHHHHHH
T ss_pred             ccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH-cCCHHHHHH
Confidence            3556778888888888888888888888888888888888888888887 88888888888888888886 333333333


Q ss_pred             Hh
Q psy12915         80 LA   81 (91)
Q Consensus        80 ~~   81 (91)
                      ++
T Consensus       159 Ll  160 (222)
T 3ehr_A          159 LL  160 (222)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.73  E-value=1.7e-17  Score=94.82  Aligned_cols=80  Identities=28%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..++.++++.|+..|++++.+|..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+. .+....+..++
T Consensus       127 ~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~-~g~~~~v~~Ll  205 (269)
T 4b93_B          127 CQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI-EKHVFVVELLL  205 (269)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHH-TTCHHHHHHHH
T ss_pred             cccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHH-cCCHHHHHHHH
Confidence            34577889999999999999999999999999999999999999999999999999999999999997 44444444444


Q ss_pred             c
Q psy12915         82 G   82 (91)
Q Consensus        82 ~   82 (91)
                      +
T Consensus       206 ~  206 (269)
T 4b93_B          206 L  206 (269)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.73  E-value=2.6e-17  Score=86.92  Aligned_cols=79  Identities=19%  Similarity=0.168  Sum_probs=69.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|++. ++++..+..|.||+++|+. .+....+..+
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~-~~~~~~v~~L  152 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ-RGAQDLVDIL  152 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHH-SCCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHH-cCcHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999 9999999999999999996 4444444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       153 l  153 (156)
T 1bd8_A          153 Q  153 (156)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.73  E-value=4.1e-17  Score=87.03  Aligned_cols=67  Identities=24%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus        45 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  111 (167)
T 3v31_A           45 AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH  111 (167)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555555555554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.73  E-value=2.8e-17  Score=83.78  Aligned_cols=68  Identities=37%  Similarity=0.419  Sum_probs=40.9

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+.
T Consensus        10 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A           10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            34555666666666666655555556666666666666666666666666666666666666666664

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.72  E-value=2.4e-17  Score=95.61  Aligned_cols=66  Identities=21%  Similarity=0.185  Sum_probs=63.8

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .++.+++++|+..|++++.+|..|+||||+|+..++.+++++|++.|++++.+|..|.|||++|+.
T Consensus       203 ~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~  268 (301)
T 2b0o_E          203 QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK  268 (301)
T ss_dssp             TTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHH
T ss_pred             cCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            388999999999999999999999999999999999999999999999999999999999999997

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.72  E-value=4.5e-17  Score=87.19  Aligned_cols=80  Identities=35%  Similarity=0.338  Sum_probs=58.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+.+|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+. ......+..+
T Consensus        54 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~L  132 (169)
T 2y1l_E           54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM-FGHLEIVEVL  132 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            355677788888888887777777777888888888888888888888888888877788888888876 3333444333


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       133 l  133 (169)
T 2y1l_E          133 L  133 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.72  E-value=4.5e-17  Score=88.61  Aligned_cols=68  Identities=31%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  143 (192)
T 2rfm_A           76 VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK  143 (192)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777775

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.72  E-value=2.4e-17  Score=89.37  Aligned_cols=67  Identities=25%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC-REGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~~   69 (91)
                      +..|+.++++.|+. |++++..|..|+||||+|+..++.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        52 ~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           52 ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            45667777777777 77777777777777777777777777777777777777776 677777777775

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.72  E-value=2.8e-17  Score=87.71  Aligned_cols=69  Identities=23%  Similarity=0.162  Sum_probs=65.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+.+|++++..|..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+.
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  144 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA  144 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999997

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.72  E-value=2.9e-17  Score=87.49  Aligned_cols=69  Identities=23%  Similarity=0.131  Sum_probs=65.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+.+|++++..|..|.||||+|+..++.+++++|++.|++++.+|..|.||+++|..
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc
Confidence            456889999999999999999999999999999999999999999999999999999999999999884

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.72  E-value=3.4e-17  Score=92.48  Aligned_cols=78  Identities=22%  Similarity=0.202  Sum_probs=49.6

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..|+.+++++|+.+|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||+++|+.  .++.+++.++
T Consensus       165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~--~g~~~i~~~l  242 (253)
T 1yyh_A          165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE--RMHHDIVRLL  242 (253)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH--TTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHH--cCCHHHHHHH
Confidence            34566666666666666666666666666666666666666666666666666666666666666664  4444444433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.72  E-value=2e-17  Score=89.66  Aligned_cols=69  Identities=30%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+.+|++++..+ ..|+||||+|+..++.+++++|++.|++++.+|..|.||+++|+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A           83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence            456789999999999999999888 789999999999999999999999999999999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.72  E-value=3.2e-17  Score=89.22  Aligned_cols=79  Identities=25%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+.+|++++..+..|.||||+|+..++.+++++|++.|++++.++..|.||+++|+. .+....+..+
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-~~~~~~v~~L  186 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI-FGRQEVIKIF  186 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-hCcHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999996 3334433333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.72  E-value=5.3e-17  Score=91.56  Aligned_cols=79  Identities=24%  Similarity=0.232  Sum_probs=59.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC-REGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.++++.|+. |++++.+|..|+||||+|+..|+.+++++|+..|++++..+ ..|.||||+|+. ......+..
T Consensus        52 A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~-~g~~~~v~~  129 (244)
T 3ui2_A           52 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG-YVRPEVVEA  129 (244)
T ss_dssp             HHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH-cCCHHHHHH
Confidence            456778888888887 77888888888888888888888888888888888888777 678888888886 333344444


Q ss_pred             Hh
Q psy12915         80 LA   81 (91)
Q Consensus        80 ~~   81 (91)
                      ++
T Consensus       130 Ll  131 (244)
T 3ui2_A          130 LV  131 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.71  E-value=6.1e-17  Score=92.92  Aligned_cols=81  Identities=30%  Similarity=0.271  Sum_probs=69.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+..|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+. .+....+..+
T Consensus        47 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~-~g~~~~v~~L  125 (299)
T 1s70_B           47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS-CGYLDIAEYL  125 (299)
T ss_dssp             HHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-cCCHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus       126 l~  127 (299)
T 1s70_B          126 IS  127 (299)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.71  E-value=4.3e-17  Score=86.46  Aligned_cols=80  Identities=25%  Similarity=0.285  Sum_probs=69.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-ccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN-INALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~-~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+.+|++++.++..|.||||+|+..++.+++++|++.|++ ++..+..|.||+++|+. .+....+..
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~-~~~~~~~~~  155 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL-YGRNEVVSL  155 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH-cCCHHHHHH
Confidence            3567889999999999999999999999999999999999999999999998 59999999999999997 444444444


Q ss_pred             Hh
Q psy12915         80 LA   81 (91)
Q Consensus        80 ~~   81 (91)
                      +.
T Consensus       156 Ll  157 (162)
T 1ihb_A          156 MQ  157 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.71  E-value=5.7e-17  Score=92.17  Aligned_cols=81  Identities=22%  Similarity=0.183  Sum_probs=69.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+.+|++++..+. .|+||||+|+..++.+++++|++.|++++.++..|.|||++|+. .+....+..
T Consensus       165 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~-~~~~~~v~~  243 (282)
T 1oy3_D          165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL-RPNPILARL  243 (282)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT-SSCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHH-cCCcHHHHH
Confidence            4567899999999999999999875 49999999999999999999999999999999999999999997 444444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +++
T Consensus       244 Ll~  246 (282)
T 1oy3_D          244 LRA  246 (282)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.71  E-value=4.1e-17  Score=92.09  Aligned_cols=69  Identities=28%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCC-------------CChHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCChH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNS-------------GNTALHLAARGKNPAIVQALIV---FGANINALCREGTFQG   64 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~tpl   64 (91)
                      |+..|+.+++++|+++|++++..+..             |.||||+|+..++.+++++|++   .|++++.+|..|.|||
T Consensus        97 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpL  176 (256)
T 2etb_A           97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL  176 (256)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHH
Confidence            46789999999999999999988775             9999999999999999999999   9999999999999999


Q ss_pred             HHHHH
Q psy12915         65 PDCCN   69 (91)
Q Consensus        65 ~~a~~   69 (91)
                      |+|+.
T Consensus       177 h~A~~  181 (256)
T 2etb_A          177 HALVM  181 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99996

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.71  E-value=9.6e-17  Score=81.75  Aligned_cols=79  Identities=34%  Similarity=0.370  Sum_probs=69.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..++.+++++|+..|++++.++..|.||+|+|+..++.+++++|++.|++++..+..|.||+++|+. .+....+..+
T Consensus        42 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~-~~~~~~~~~L  120 (126)
T 1n0r_A           42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLL  120 (126)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-cCcHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999999997 4444444433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.71  E-value=7.8e-17  Score=90.87  Aligned_cols=69  Identities=30%  Similarity=0.314  Sum_probs=65.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+.+|++++..+ ..|+||||+|+..++.+++++|+..|++++.+|..|.||+++|+.
T Consensus        84 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            466789999999999999999988 779999999999999999999999999999999999999999985

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.71  E-value=4.5e-17  Score=90.99  Aligned_cols=81  Identities=30%  Similarity=0.311  Sum_probs=65.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+.+|++++..+. .|.||||+|+..++.+++++|++.|++++..+..|.||+++|+. .+....+..
T Consensus       124 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~-~~~~~~~~~  202 (236)
T 1ikn_D          124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG-RPSTRIQQQ  202 (236)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT-SSCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHc-cCchHHHHH
Confidence            3567888899999999999888876 88999999999999999999999999999999999999999986 334444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +.+
T Consensus       203 Ll~  205 (236)
T 1ikn_D          203 LGQ  205 (236)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.70  E-value=6e-17  Score=96.20  Aligned_cols=68  Identities=24%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+.+|++++..|..|+||||+|+..++.+++++|+..|++++..|..|.|||++|+.
T Consensus       243 a~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~  310 (368)
T 3jue_A          243 TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME  310 (368)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777775

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.70  E-value=1.7e-17  Score=92.07  Aligned_cols=78  Identities=23%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             CccCCcHHHHHHHHhc-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSR-MADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+.. |++++.+|..|+||||+|+..++.+++++|+..|++++.++..|.||+++|+.  .+...++.
T Consensus       113 A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~--~~~~~~l~  190 (222)
T 3ehr_A          113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN--AACASLLK  190 (222)
T ss_dssp             HHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS--HHHHHHHC
T ss_pred             HHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc--hhHHHHHH
Confidence            4678999999999998 99999999999999999999999999999999999999999999999999996  44444443


Q ss_pred             H
Q psy12915         80 L   80 (91)
Q Consensus        80 ~   80 (91)
                      .
T Consensus       191 ~  191 (222)
T 3ehr_A          191 K  191 (222)
T ss_dssp             -
T ss_pred             H
Confidence            3

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.70  E-value=9.1e-17  Score=90.78  Aligned_cols=69  Identities=23%  Similarity=0.152  Sum_probs=65.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC--------------CCCChHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCCh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD--------------NSGNTALHLAARGKNPAIVQALIV---FGANINALCREGTFQ   63 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~tp   63 (91)
                      |+..|+.+++++|+.+|++++..+              ..|.||||+|+..++.+++++|++   .|++++.+|..|.||
T Consensus       100 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~Tp  179 (260)
T 3jxi_A          100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV  179 (260)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcH
Confidence            467899999999999999999987              579999999999999999999999   999999999999999


Q ss_pred             HHHHHH
Q psy12915         64 GPDCCN   69 (91)
Q Consensus        64 l~~a~~   69 (91)
                      ||+|+.
T Consensus       180 Lh~A~~  185 (260)
T 3jxi_A          180 LHALVA  185 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999996

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.70  E-value=6.2e-17  Score=90.65  Aligned_cols=67  Identities=30%  Similarity=0.340  Sum_probs=63.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCChHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC-REGTFQGPDC   67 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a   67 (91)
                      |+..|+.+++++|++.|++++..|..|+||||+|+..++.+++++|++.|++++..+ ..|.|||++|
T Consensus        61 A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            467899999999999999999999999999999999999999999999999999987 6999999999

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.69  E-value=8.6e-17  Score=90.81  Aligned_cols=80  Identities=25%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..|+.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.|||++|+. .+....+..++
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~-~~~~~~v~~Ll  210 (253)
T 1yyh_A          132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR-EGSYETAKVLL  210 (253)
T ss_dssp             HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-CCCHHHHHHHH
Confidence            45677888999999999998888889999999999999999999999999999999999999999987 44444444444


Q ss_pred             c
Q psy12915         82 G   82 (91)
Q Consensus        82 ~   82 (91)
                      +
T Consensus       211 ~  211 (253)
T 1yyh_A          211 D  211 (253)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.69  E-value=2.1e-16  Score=87.40  Aligned_cols=66  Identities=26%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .++.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+.
T Consensus       102 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  167 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR  167 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             hCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHH
Confidence            344444444444444444444444455555444444444444444444444444444455544443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.69  E-value=2.8e-16  Score=91.48  Aligned_cols=81  Identities=25%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+.+|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+. .+....+..+
T Consensus        65 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~L  143 (351)
T 3utm_A           65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS-KNRVEVCSLL  143 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            456788999999999999999888889999999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus       144 l~  145 (351)
T 3utm_A          144 LS  145 (351)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.69  E-value=3e-16  Score=86.84  Aligned_cols=81  Identities=20%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+.+|++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+. ......+..+
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-~~~~~i~~~L  210 (223)
T 2f8y_A          132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE-RMHHDIVRLL  210 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHH-hcchHHHHHH
Confidence            356788889999999998888888888999999999999999999999999999989999999999886 3333444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      .+
T Consensus       211 ~~  212 (223)
T 2f8y_A          211 DE  212 (223)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.69  E-value=1.5e-16  Score=86.84  Aligned_cols=68  Identities=21%  Similarity=0.261  Sum_probs=60.5

Q ss_pred             ccCCc----HHHHHHHHhcCCCCcccCCCCChHHHHHHHcCC------HHHHHHHHhcCCCccccccCCC-ChHHHHHH
Q psy12915          2 VLNNR----LECVVALLSRMADVELVDNSGNTALHLAARGKN------PAIVQALIVFGANINALCREGT-FQGPDCCN   69 (91)
Q Consensus         2 ~~~~~----~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~ll~~g~~~~~~~~~g~-tpl~~a~~   69 (91)
                      +..++    .+++++|+.+|++++.+|..|+||||+|+..++      .+++++|++.|++++.+|..|. ||||+|+.
T Consensus        46 ~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~  124 (186)
T 3t8k_A           46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN  124 (186)
T ss_dssp             TTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG
T ss_pred             HHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHH
Confidence            44554    458999999999999999999999999998886      5789999999999999999999 99999996

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.69  E-value=1.9e-16  Score=90.88  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=69.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+..|++++..|..|.||||+|+..++.+++++|++.|++++..+..|.|||++|+. .+....+..+
T Consensus        66 Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~-~~~~~~v~~L  144 (285)
T 3d9h_A           66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV-SGSWDCVNLL  144 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH-HTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-cCHHHHHHHH
Confidence            466889999999999999999999999999999999999999999999999999999999999999997 4444444444


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus       145 l~  146 (285)
T 3d9h_A          145 LQ  146 (285)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.69  E-value=4.1e-17  Score=91.04  Aligned_cols=68  Identities=34%  Similarity=0.384  Sum_probs=45.5

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++++..+ ..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.
T Consensus       124 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  192 (241)
T 1k1a_A          124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG  192 (241)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            34566666666666666666655 456667777666666666666666666666666666677776665

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.68  E-value=1.9e-16  Score=90.17  Aligned_cols=69  Identities=28%  Similarity=0.219  Sum_probs=65.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCC--------------CCChHHHHHHHcCCHHHHHHHHh---cCCCccccccCCCCh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDN--------------SGNTALHLAARGKNPAIVQALIV---FGANINALCREGTFQ   63 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~ll~---~g~~~~~~~~~g~tp   63 (91)
                      |+..|+.+++++|+.+|++++..+.              .|.||||+|+..++.+++++|++   .|++++.+|..|.||
T Consensus       108 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tp  187 (273)
T 2pnn_A          108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV  187 (273)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcH
Confidence            4678999999999999999999886              79999999999999999999999   999999999999999


Q ss_pred             HHHHHH
Q psy12915         64 GPDCCN   69 (91)
Q Consensus        64 l~~a~~   69 (91)
                      ||+|+.
T Consensus       188 Lh~A~~  193 (273)
T 2pnn_A          188 LHALVE  193 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999997

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.68  E-value=1.9e-17  Score=87.72  Aligned_cols=80  Identities=20%  Similarity=0.145  Sum_probs=69.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCC-hHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTF-QGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~t-pl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+.+|++++..+..|+||||+|+ .++.+++++|++.|++++..+..|.| |||+|+. ......+..
T Consensus        19 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~-~~~~~~v~~   96 (156)
T 1bi7_B           19 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVV   96 (156)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH-HTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH-CCCHHHHHH
Confidence            46789999999999999999999999999999985 89999999999999999999999999 9999997 444444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +++
T Consensus        97 Ll~   99 (156)
T 1bi7_B           97 LHR   99 (156)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.68  E-value=2.7e-16  Score=85.80  Aligned_cols=68  Identities=22%  Similarity=0.197  Sum_probs=43.6

Q ss_pred             ccCCcHHHHHHHHhcC-CCCcccCCCCChHHHHHHHcCC-----HHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKN-----PAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..| ++++.++..|.||||+|+..+.     .+++++|++.|++++.++..|.||+++|+.
T Consensus       114 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  187 (201)
T 3hra_A          114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ  187 (201)
T ss_dssp             HHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHH
Confidence            3455666666666666 5666666666666666666655     666666666666666666666666666664

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.68  E-value=2.6e-16  Score=93.25  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=70.7

Q ss_pred             CccCCcHHHHHHHHhcC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+..+ ++++..|..|.||||+|+..|+.+++++|++.|++++..|..|.||+++|+. .+....+..
T Consensus       286 A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~-~g~~~iv~~  364 (373)
T 2fo1_E          286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA-NNHHNIVDI  364 (373)
T ss_dssp             HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH-TTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHH-cCCHHHHHH
Confidence            46789999999999876 9999999999999999999999999999999999999999999999999996 344444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +.+
T Consensus       365 Ll~  367 (373)
T 2fo1_E          365 FDR  367 (373)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.68  E-value=1.4e-16  Score=88.53  Aligned_cols=67  Identities=31%  Similarity=0.331  Sum_probs=36.4

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..++.+++++|+.+|++++..+..|.||||+|+..++.+++++|+..|++++.++..|.||+++|+.
T Consensus       115 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  181 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD  181 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHH
Confidence            3455555555555555555555555555555555555555555555555555555555555555554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.68  E-value=2.7e-16  Score=87.15  Aligned_cols=79  Identities=19%  Similarity=0.095  Sum_probs=57.7

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFG-ANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      +..++.+++++|+++|++++.++..|.||||+|+..++.+++++|++.| ++++..|..|.|||++|+. .+....+..+
T Consensus       115 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~-~~~~~~v~~L  193 (228)
T 2dzn_A          115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA-EGHGDAAVLL  193 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            4567777888888888877777777888888888888888888888877 7778888888888888876 3333333333


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       194 l  194 (228)
T 2dzn_A          194 V  194 (228)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.68  E-value=8.5e-17  Score=91.45  Aligned_cols=81  Identities=26%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             CccCCcHHHHHHHHhcCCC---CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHH
Q psy12915          1 MVLNNRLECVVALLSRMAD---VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTL   77 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~   77 (91)
                      |+..|+.+++++|+..|++   ++..+..|+||||+|+..|+.+++++|++.|++++..+..|.|||++|+. .+....+
T Consensus        16 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~-~~~~~~v   94 (282)
T 1oy3_D           16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR-VRAHTCA   94 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT-TTCHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-cCCcchh
Confidence            4678999999999999988   77788899999999999999999999999999999999999999999997 4445555


Q ss_pred             HHHhc
Q psy12915         78 KRLAG   82 (91)
Q Consensus        78 ~~~~~   82 (91)
                      ..+++
T Consensus        95 ~~Ll~   99 (282)
T 1oy3_D           95 CVLLQ   99 (282)
T ss_dssp             HHHSS
T ss_pred             Hhhhc
Confidence            55544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.68  E-value=9.5e-17  Score=94.48  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=39.5

Q ss_pred             ccCCcHHHHHHHHhcCCC-----CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMAD-----VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++     ++..+..|+||||+|+..++.+++++|++.|++++..|..|.|||++|+.
T Consensus       181 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  253 (364)
T 3ljn_A          181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR  253 (364)
T ss_dssp             HHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            344555555555555555     55555555566666665566666666665566666555566666666554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.68  E-value=2.3e-16  Score=87.81  Aligned_cols=69  Identities=32%  Similarity=0.250  Sum_probs=64.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCC-------------CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDN-------------SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDC   67 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a   67 (91)
                      |+..|+.+++++|+.+|++++..+.             .|.||||+|+..++.+++++|++.|++++..|..|.||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            4567899999999999999888755             699999999999999999999999999999999999999999


Q ss_pred             HH
Q psy12915         68 CN   69 (91)
Q Consensus        68 ~~   69 (91)
                      +.
T Consensus       162 ~~  163 (232)
T 2rfa_A          162 IL  163 (232)
T ss_dssp             HT
T ss_pred             HH
Confidence            97

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.68  E-value=2.4e-16  Score=90.53  Aligned_cols=81  Identities=17%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCC-CChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG-TFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g-~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+.+|++++..+..|+||||+|+..++.+++++|++.|++++..+..| .|||++|+. .+....+..
T Consensus        69 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~-~~~~~~v~~  147 (285)
T 3kea_A           69 AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM-LNDVSIVSY  147 (285)
T ss_dssp             HTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHH-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH-cCCHHHHHH
Confidence            466788888888888888888888888888888888888888888888888888888888 688888886 344444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +.+
T Consensus       148 Ll~  150 (285)
T 3kea_A          148 FLS  150 (285)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.67  E-value=6e-16  Score=86.29  Aligned_cols=79  Identities=22%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+. .+....+..+.
T Consensus       119 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll  197 (237)
T 3b7b_A          119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR-ENRYDCVVLFL  197 (237)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-hCCHhHHHHHH
Confidence            34566677777777777776666667777777777777777777777777777777777777777775 33333333333

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.67  E-value=2.6e-16  Score=87.56  Aligned_cols=81  Identities=19%  Similarity=0.107  Sum_probs=69.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHH----HHHHhcCCCc------cccccCCCChHHHHHHh
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIV----QALIVFGANI------NALCREGTFQGPDCCNI   70 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~----~~ll~~g~~~------~~~~~~g~tpl~~a~~~   70 (91)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++    ++|++.|+++      +.+|..|.||+++|+. 
T Consensus       128 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~-  206 (232)
T 2rfa_A          128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV-  206 (232)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH-
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHH-
Confidence            3567889999999999999999999999999999999999988    9999999988      6899999999999997 


Q ss_pred             hhhHHHHHHHhc
Q psy12915         71 FKRWRTLKRLAG   82 (91)
Q Consensus        71 ~~~~~~~~~~~~   82 (91)
                      .+....+..+++
T Consensus       207 ~g~~~~v~~Ll~  218 (232)
T 2rfa_A          207 EGNIVMFQHLMQ  218 (232)
T ss_dssp             HTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHh
Confidence            444444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.67  E-value=6.9e-16  Score=85.74  Aligned_cols=68  Identities=26%  Similarity=0.239  Sum_probs=43.7

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++++.+|..|.||||+|+..++.+++++|++.|++++.++..|.||+++|..
T Consensus       147 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             HHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            34456666666666666666666666666666666666666666666666666666666666666653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.67  E-value=1.1e-16  Score=90.34  Aligned_cols=80  Identities=20%  Similarity=0.288  Sum_probs=69.3

Q ss_pred             CccCCcHHHHHHHHh---cCCCCcccCCCCChHHHHHHH--cCCHH-------HHHHHHhcCCCc-------cccccCCC
Q psy12915          1 MVLNNRLECVVALLS---RMADVELVDNSGNTALHLAAR--GKNPA-------IVQALIVFGANI-------NALCREGT   61 (91)
Q Consensus         1 a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~l~~a~~--~~~~~-------~~~~ll~~g~~~-------~~~~~~g~   61 (91)
                      |+..|+.+++++|++   .|++++.+|..|+||||+|+.  .++.+       ++++|++.|+++       +.+|..|.
T Consensus       143 A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~  222 (256)
T 2etb_A          143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL  222 (256)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred             HHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence            456789999999999   999999999999999999998  78888       999999999999       99999999


Q ss_pred             ChHHHHHHhhhhHHHHHHHh
Q psy12915         62 FQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus        62 tpl~~a~~~~~~~~~~~~~~   81 (91)
                      |||++|+. .+....+..++
T Consensus       223 tpL~~A~~-~g~~~~v~~Ll  241 (256)
T 2etb_A          223 TPLKLAAK-EGKIEIFRHIL  241 (256)
T ss_dssp             CHHHHHHH-TTCHHHHHHHH
T ss_pred             CHHHHHHH-hCCHHHHHHHH
Confidence            99999997 44444444443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.66  E-value=1.9e-16  Score=88.34  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+..|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||+++|+.
T Consensus       151 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL  219 (237)
T ss_dssp             HHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred             HHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999999996

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.66  E-value=2e-16  Score=90.78  Aligned_cols=69  Identities=20%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+..|++++..|..|.||||+|+..++.+++++|++.|++++.+|..|.||+++|..
T Consensus       206 A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  274 (299)
T 1s70_B          206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (299)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.66  E-value=1.5e-15  Score=90.22  Aligned_cols=81  Identities=19%  Similarity=0.081  Sum_probs=70.5

Q ss_pred             CccC-CcHHHHHHHHhcCCCCcccC--CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHH
Q psy12915          1 MVLN-NRLECVVALLSRMADVELVD--NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTL   77 (91)
Q Consensus         1 a~~~-~~~~~~~~L~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~   77 (91)
                      |+.. ++.++++.|+..|++++..+  ..|.||||+|+..++.+++++|+..|++++..|..|.||||+|+. ......+
T Consensus       206 Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~-~g~~~~v  284 (368)
T 3jue_A          206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI-LGHTGLA  284 (368)
T ss_dssp             HTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHHH
T ss_pred             HHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH-cCcHHHH
Confidence            3556 99999999999999999887  789999999999999999999999999999999999999999997 4444444


Q ss_pred             HHHhc
Q psy12915         78 KRLAG   82 (91)
Q Consensus        78 ~~~~~   82 (91)
                      ..+++
T Consensus       285 ~~LL~  289 (368)
T 3jue_A          285 CLFLK  289 (368)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.66  E-value=1.4e-16  Score=90.03  Aligned_cols=81  Identities=19%  Similarity=0.181  Sum_probs=69.2

Q ss_pred             CccCCcHHHHHHHHh---cCCCCcccCCCCChHHHHHHHcCC---------HHHHHHHHhcCCCc-------cccccCCC
Q psy12915          1 MVLNNRLECVVALLS---RMADVELVDNSGNTALHLAARGKN---------PAIVQALIVFGANI-------NALCREGT   61 (91)
Q Consensus         1 a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~ll~~g~~~-------~~~~~~g~   61 (91)
                      |+..|+.+++++|+.   .|++++.+|..|+||||+|+..++         .+++++|+..|+++       +..|..|.
T Consensus       147 A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~  226 (260)
T 3jxi_A          147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL  226 (260)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSC
T ss_pred             HHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCC
Confidence            466889999999999   899999999999999999998877         68999999999998       78999999


Q ss_pred             ChHHHHHHhhhhHHHHHHHhc
Q psy12915         62 FQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus        62 tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      |||++|+. .+....+..+++
T Consensus       227 tpL~~A~~-~g~~~~v~~Ll~  246 (260)
T 3jxi_A          227 SPLMMAAK-TGKIGIFQHIIR  246 (260)
T ss_dssp             CHHHHHHH-TTCHHHHHHHHH
T ss_pred             CHHHHHHH-cCCHHHHHHHHH
Confidence            99999997 444444444443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.66  E-value=6.7e-17  Score=90.75  Aligned_cols=68  Identities=26%  Similarity=0.273  Sum_probs=63.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCC-ChHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT-FQGPDCC   68 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-tpl~~a~   68 (91)
                      |+..|+.+++++|+.+|++++.+|..|+||||+|+..++.+++++|++.|++++..+..|. ||+++|.
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE  145 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999998887 9999993

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.66  E-value=9.1e-16  Score=85.58  Aligned_cols=79  Identities=27%  Similarity=0.170  Sum_probs=64.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+.+|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||+++|..  .++.+++..
T Consensus       157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~--~~~~~i~~~  234 (241)
T 1k1a_A          157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS--RRVIDILRG  234 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS--HHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHh--cCcHHHHhh
Confidence            356788888898888888888888888899999988888889999988888888888889999998885  555554443


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       235 l  235 (241)
T 1k1a_A          235 K  235 (241)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.66  E-value=5.4e-16  Score=93.03  Aligned_cols=69  Identities=28%  Similarity=0.261  Sum_probs=55.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+.+|+.+++++|+.+|++++.++..|+||||+|+..++.+++++|++.|++++..+.+|.||+++|..
T Consensus       318 A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~  386 (437)
T 1n11_A          318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR  386 (437)
T ss_dssp             HHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            345677788888888888888877788888888888888888888888888888888888888888875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.65  E-value=8.6e-16  Score=90.40  Aligned_cols=81  Identities=15%  Similarity=0.027  Sum_probs=71.1

Q ss_pred             CccCC--cHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-----ccccccCCCChHHHHHHhhhh
Q psy12915          1 MVLNN--RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN-----INALCREGTFQGPDCCNIFKR   73 (91)
Q Consensus         1 a~~~~--~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~-----~~~~~~~g~tpl~~a~~~~~~   73 (91)
                      |+..|  +.+++++|+..|++++..|..|.||||+|+..++.+++++|++.|++     ++..+..|.||||+|+. .+.
T Consensus       145 A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~-~g~  223 (364)
T 3ljn_A          145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL-INW  223 (364)
T ss_dssp             HHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHT-TTC
T ss_pred             HHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHH-cCC
Confidence            35677  89999999999999999999999999999999999999999999998     99999999999999997 444


Q ss_pred             HHHHHHHhc
Q psy12915         74 WRTLKRLAG   82 (91)
Q Consensus        74 ~~~~~~~~~   82 (91)
                      ...+..+++
T Consensus       224 ~~~v~~Ll~  232 (364)
T 3ljn_A          224 EDVAMRFVE  232 (364)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            455555554

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.65  E-value=7.1e-16  Score=94.34  Aligned_cols=81  Identities=20%  Similarity=0.219  Sum_probs=69.8

Q ss_pred             CccCCcHHHHHHHHhcCCCCccc------CCCCChHHHHHHH---cCCHHHHHHHHhcCCCccccccCCCChHHHHHHhh
Q psy12915          1 MVLNNRLECVVALLSRMADVELV------DNSGNTALHLAAR---GKNPAIVQALIVFGANINALCREGTFQGPDCCNIF   71 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~   71 (91)
                      |+..|+.+.++.|+..|++++..      +..|.||||+|+.   .++.+++++|+..|++++.+|..|.||||+|+. .
T Consensus       139 A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~-~  217 (497)
T 3lvq_E          139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-Y  217 (497)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTT-T
T ss_pred             HHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHH-c
Confidence            45678999999999999998877      7789999999966   899999999999999999999999999999997 4


Q ss_pred             hhHHHHHHHhc
Q psy12915         72 KRWRTLKRLAG   82 (91)
Q Consensus        72 ~~~~~~~~~~~   82 (91)
                      +....+..+++
T Consensus       218 g~~~~v~~Ll~  228 (497)
T 3lvq_E          218 NQPDCLKLLLK  228 (497)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            44455555544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.64  E-value=8.9e-16  Score=92.09  Aligned_cols=80  Identities=19%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..|+.+++++|+.+|++++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+. .+....+..++
T Consensus       286 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~-~g~~~iv~~Ll  364 (437)
T 1n11_A          286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ-QGHTDIVTLLL  364 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH-CChHHHHHHHH
Confidence            45678888888888888888888888999999999999999999999999999999999999999986 33344444444


Q ss_pred             c
Q psy12915         82 G   82 (91)
Q Consensus        82 ~   82 (91)
                      +
T Consensus       365 ~  365 (437)
T 1n11_A          365 K  365 (437)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.64  E-value=2.6e-15  Score=85.95  Aligned_cols=79  Identities=22%  Similarity=0.218  Sum_probs=64.8

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      ..++.++++.|+..|...+..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+. .+....+..+++
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~-~g~~~iv~~Ll~  237 (276)
T 4hbd_A          159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE-HGHKEIAGLLLA  237 (276)
T ss_dssp             SHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH-CCCHHHHHHHHh
Confidence            3456667777777776666677789999999999999999999999999999999999999999997 444555555554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.64  E-value=2e-15  Score=85.65  Aligned_cols=68  Identities=26%  Similarity=0.241  Sum_probs=38.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELV-DNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.+++++|+..|++++.. +..|+||||+|+..++.+++++|++.|++++..+..|.|||++|+.
T Consensus        13 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A           13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            3455555555555555555544 3445555555555555555555555555555555555555555554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.64  E-value=2.1e-15  Score=87.77  Aligned_cols=77  Identities=25%  Similarity=0.218  Sum_probs=59.8

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      +..+++++|+..|++++.++..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+. .+....+..+++
T Consensus       225 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~-~~~~~~v~~Ll~  301 (351)
T 3utm_A          225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL-AGHLQTCRLLLS  301 (351)
T ss_dssp             THHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-cCcHHHHHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888888888886 334444444443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.64  E-value=1.3e-15  Score=84.45  Aligned_cols=80  Identities=26%  Similarity=0.273  Sum_probs=57.7

Q ss_pred             ccCCcHHHHHHHHhcC--CCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          2 VLNNRLECVVALLSRM--ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      +..|+.+++++|+.+|  ++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+. .+....+..
T Consensus        80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~  158 (228)
T 2dzn_A           80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS-VGSLKLIEL  158 (228)
T ss_dssp             HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH-TTCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHH-cCCHHHHHH
Confidence            4566777888888777  6666677777888888888888888888888888888888888888888876 334444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +.+
T Consensus       159 Ll~  161 (228)
T 2dzn_A          159 LCG  161 (228)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.63  E-value=1.8e-15  Score=85.89  Aligned_cols=82  Identities=24%  Similarity=0.204  Sum_probs=72.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+.+|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.|||++|+. ......+..+
T Consensus        46 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~~~~L  124 (285)
T 1wdy_A           46 AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV-YGKVKALKFL  124 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHH-hCCHHHHHHH
Confidence            466899999999999999999999999999999999999999999999999999999999999999997 4445555555


Q ss_pred             hcC
Q psy12915         81 AGG   83 (91)
Q Consensus        81 ~~~   83 (91)
                      .+.
T Consensus       125 l~~  127 (285)
T 1wdy_A          125 YKR  127 (285)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.63  E-value=1.4e-15  Score=82.94  Aligned_cols=66  Identities=27%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             CCcHHHHHHHHhcCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMA-DVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .|+.+.++.|+..+. +++..+..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+.
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A           15 QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             TTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             hccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            444444444444333 444444444444444444444444444444444444444444444444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.63  E-value=3.1e-16  Score=89.25  Aligned_cols=80  Identities=23%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             CccCCcHHHHHHHHh---cCCCCcccCCCCChHHHHHHHcCC---------HHHHHHHHhcCCCcc-------ccccCCC
Q psy12915          1 MVLNNRLECVVALLS---RMADVELVDNSGNTALHLAARGKN---------PAIVQALIVFGANIN-------ALCREGT   61 (91)
Q Consensus         1 a~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~~~~ll~~g~~~~-------~~~~~g~   61 (91)
                      |+..|+.+++++|+.   .|++++.+|..|+||||+|+..++         .+++++|+..|++++       ..|..|.
T Consensus       155 A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~  234 (273)
T 2pnn_A          155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL  234 (273)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSC
T ss_pred             HHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCC
Confidence            456789999999999   999999999999999999999888         789999999999986       5899999


Q ss_pred             ChHHHHHHhhhhHHHHHHHh
Q psy12915         62 FQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus        62 tpl~~a~~~~~~~~~~~~~~   81 (91)
                      |||++|+. .+....+..++
T Consensus       235 TpL~~A~~-~g~~~iv~~Ll  253 (273)
T 2pnn_A          235 TPLALAAS-SGKIGVLAYIL  253 (273)
T ss_dssp             CHHHHHHH-TTCHHHHHHHH
T ss_pred             CHHHHHHH-hChHHHHHHHH
Confidence            99999997 44444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.63  E-value=5.4e-16  Score=89.08  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=67.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+..|++++..+  |+||||+|+..++.+++++|++.|++++..+..|.||||+|+. .+....+..+
T Consensus        38 A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~-~g~~~~v~~L  114 (285)
T 3kea_A           38 AIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD-SGNMQTVKLF  114 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH-cCCHHHHHHH
Confidence            467899999999999999988764  8999999999999999999999999999999999999999997 4444444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       115 l  115 (285)
T 3kea_A          115 V  115 (285)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.62  E-value=3.2e-15  Score=87.21  Aligned_cols=68  Identities=26%  Similarity=0.250  Sum_probs=55.5

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      |+..|+.++|+.|+++|++++.++. .|+||||+|+..|+.+++++|++.|++++..+..+.+|++.+.
T Consensus        32 Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            5678999999999999999998875 5899999999999999999999998877655444444433333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.61  E-value=3.3e-15  Score=86.64  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=69.4

Q ss_pred             CccCCcHHHHHHHHhcCCCCcc------cCCCCChHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCChHHHHHHhh
Q psy12915          1 MVLNNRLECVVALLSRMADVEL------VDNSGNTALHLAARG---KNPAIVQALIVFGANINALCREGTFQGPDCCNIF   71 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~   71 (91)
                      |+..|+.+.++.|+..|++++.      .+..|.||||+|+..   ++.+++++|+..|++++..|..|.||||+|+. .
T Consensus       158 A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~-~  236 (301)
T 2b0o_E          158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-Y  236 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHH-T
T ss_pred             hhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH-c
Confidence            3567899999999999999887      578899999999987   89999999999999999999999999999997 4


Q ss_pred             hhHHHHHHHhc
Q psy12915         72 KRWRTLKRLAG   82 (91)
Q Consensus        72 ~~~~~~~~~~~   82 (91)
                      +....+..+++
T Consensus       237 g~~~~v~~Ll~  247 (301)
T 2b0o_E          237 NQPDCLKLLLK  247 (301)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            44455555544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.61  E-value=6.5e-15  Score=82.22  Aligned_cols=80  Identities=23%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             ccCCcHHHHHHHHhcCCC------CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCChHHHHHHhhhhH
Q psy12915          2 VLNNRLECVVALLSRMAD------VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR-EGTFQGPDCCNIFKRW   74 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a~~~~~~~   74 (91)
                      +..|+.+++++|+..+.+      .+..+..|.||||+|+..++.+++++|++.|++++..+. .|.||||+|+. .+..
T Consensus        86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~-~~~~  164 (236)
T 1ikn_D           86 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD-LQNP  164 (236)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH-TTCH
T ss_pred             HHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH-cCCH
Confidence            456777888888887764      344566788888888888888888888888888888886 88888888886 4444


Q ss_pred             HHHHHHhc
Q psy12915         75 RTLKRLAG   82 (91)
Q Consensus        75 ~~~~~~~~   82 (91)
                      ..+..+++
T Consensus       165 ~~v~~Ll~  172 (236)
T 1ikn_D          165 DLVSLLLK  172 (236)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            44444444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.61  E-value=4.8e-15  Score=85.11  Aligned_cols=65  Identities=22%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .|+.+++++|+..|++++..|..|.||||+|+..++.+++++|++.|++++. +..|.|||++|+.
T Consensus       167 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~  231 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVR  231 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHH
Confidence            3444555555555555544444555555555555555555555555555442 4445555555543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.60  E-value=1.9e-16  Score=86.33  Aligned_cols=63  Identities=10%  Similarity=-0.072  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCCCCcccCCCCC-hHHHHHHHcCC-----HHHHHHHHh-cCCCccccccCCCChHHHHHH
Q psy12915          7 LECVVALLSRMADVELVDNSGN-TALHLAARGKN-----PAIVQALIV-FGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         7 ~~~~~~L~~~~~~~~~~~~~~~-~~l~~a~~~~~-----~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .++++.|+.+|++++.+|..|. ||||+|+..+.     .+++++|+. .|++++.+|..|.|||++|+.
T Consensus        94 ~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           94 TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            5789999999999999999999 99999998443     458899999 999999999999999999997

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.60  E-value=7.7e-15  Score=84.26  Aligned_cols=80  Identities=24%  Similarity=0.254  Sum_probs=67.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCc------ccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCChHHHHHHhhh
Q psy12915          2 VLNNRLECVVALLSRMADVE------LVDNSGNTALHLAARG---KNPAIVQALIVFGANINALCREGTFQGPDCCNIFK   72 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~   72 (91)
                      +..|+.+.+..++..|.+++      ..+..|.||||+|+..   ++.+++++|++.|++++.+|..|.||||+|+. .+
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~-~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL-TD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHH-TT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHH-cC
Confidence            45788889999999998844      3467899999999998   89999999999999999999999999999997 44


Q ss_pred             hHHHHHHHhc
Q psy12915         73 RWRTLKRLAG   82 (91)
Q Consensus        73 ~~~~~~~~~~   82 (91)
                      ....+..+++
T Consensus       217 ~~~~v~~Ll~  226 (278)
T 1dcq_A          217 NAECLKLLLR  226 (278)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            4444444444

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.59  E-value=3.2e-15  Score=87.29  Aligned_cols=64  Identities=23%  Similarity=0.178  Sum_probs=59.9

Q ss_pred             cHHHHHHHHhcCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          6 RLECVVALLSRMADVEL-VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         6 ~~~~~~~L~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..++++.|+..|++++. .|..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+.
T Consensus       109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A          109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK  173 (327)
T ss_dssp             HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            45677888889999999 79999999999999999999999999999999999999999999996

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.57  E-value=2.1e-15  Score=89.38  Aligned_cols=67  Identities=19%  Similarity=0.198  Sum_probs=48.6

Q ss_pred             HHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915         13 LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus        13 L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|++++..|..|.||||+|+..|+.+++++|++.|++++..+..|.|||++|+. .+....+..+
T Consensus       152 ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~-~g~~~~v~~L  218 (373)
T 2fo1_E          152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA-NRDFGMMVYM  218 (373)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHH-CCCHHHHHHH
Confidence            346777777777778888888888888888888888888888888888888888875 3333333333

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.57  E-value=3.2e-14  Score=83.00  Aligned_cols=75  Identities=25%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             HHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          7 LECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         7 ~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      ..++++|+.+|++++.++..|+||||+|+..++.++++.|+. .|++++.+|.+|.||||+|+. .+....+..+++
T Consensus       219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~-~g~~~iv~~Ll~  294 (337)
T 4g8k_A          219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCK  294 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHH-TTCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHH-cCCHHHHHHHHH
Confidence            456778888888888888888899999999999998888887 478888989999999999986 444444444444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.54  E-value=2.3e-14  Score=79.64  Aligned_cols=67  Identities=27%  Similarity=0.322  Sum_probs=33.7

Q ss_pred             cCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..|+.+++++|+..|.+++..+ ..+.|||++|+..++.+++++|++.|++++..+..|.||+++|+.
T Consensus        51 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           51 INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            3445555555555554444322 224555555555555555555555555555555555555555554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.54  E-value=8e-14  Score=77.43  Aligned_cols=81  Identities=20%  Similarity=0.075  Sum_probs=68.8

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC-REGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~-~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.++++.|++.|++++..+..|.||||+|+..++.+++++|++.|++++..+ ..|.|||++|+. .+....+..
T Consensus        16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~-~~~~~~v~~   94 (240)
T 3eu9_A           16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR-QGHLSMVVQ   94 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHH-HTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHH-cCCHHHHHH
Confidence            467899999999999999999999999999999999999999999999999887555 459999999997 444444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +.+
T Consensus        95 Ll~   97 (240)
T 3eu9_A           95 LMK   97 (240)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.54  E-value=4.6e-15  Score=86.66  Aligned_cols=69  Identities=17%  Similarity=0.058  Sum_probs=62.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCC---HHHHHHHHhcC-CCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKN---PAIVQALIVFG-ANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~g-~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..++   .+.+..|+..+ ++++..+..|.||||+|+.
T Consensus       138 Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII  210 (327)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHH
Confidence            467899999999999999999999999999999999988   67777777765 7899999999999999995

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.52  E-value=8.5e-15  Score=73.86  Aligned_cols=64  Identities=33%  Similarity=0.361  Sum_probs=58.2

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQG   64 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl   64 (91)
                      |+..++.+++++|+..|++++..|..|.||||+|+..++.+++++|++.|++++..+..|.+|-
T Consensus        49 A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           49 AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            4678899999999999999999999999999999999999999999999999999999999884

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.45  E-value=5.7e-13  Score=64.88  Aligned_cols=56  Identities=30%  Similarity=0.342  Sum_probs=46.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915         26 SGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus        26 ~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      .|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+. ......+..+.+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~-~~~~~~v~~Ll~   56 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLE   56 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-cCCHHHHHHHHH
Confidence            37899999999999999999999999999999999999999997 444444444443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.44  E-value=9.6e-15  Score=87.02  Aligned_cols=78  Identities=13%  Similarity=0.078  Sum_probs=57.7

Q ss_pred             CccCCcHHHHHHHHhcCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccc--cccCCCChHHHHH-HhhhhH
Q psy12915          1 MVLNNRLECVVALLSRMADV---ELVDNSGNTALHLAARGKNPAIVQALIVFGANINA--LCREGTFQGPDCC-NIFKRW   74 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~--~~~~g~tpl~~a~-~~~~~~   74 (91)
                      |+..|+.+++++|+++|+++   +..+.. .||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+ . .+..
T Consensus       135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~-~G~~  212 (376)
T 2aja_A          135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG-RGHH  212 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST-TCCH
T ss_pred             HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHH-CCCH
Confidence            46778889999998888652   222222 8899999999999999999998888877  7888889999988 6 3333


Q ss_pred             HHHHHH
Q psy12915         75 RTLKRL   80 (91)
Q Consensus        75 ~~~~~~   80 (91)
                      +.+..+
T Consensus       213 eiv~~L  218 (376)
T 2aja_A          213 NVINFL  218 (376)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.29  E-value=1.7e-11  Score=61.37  Aligned_cols=59  Identities=20%  Similarity=0.142  Sum_probs=49.0

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915         23 VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus        23 ~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      .+..|.++||+|+..++.+++++|+..|++++.+|..|.||||+|+. ......+..+++
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~-~~~~~~v~~Ll~   78 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR-NGHLEVVKLLLE   78 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH-cCCHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999997 444444444443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.21  E-value=2.2e-12  Score=76.91  Aligned_cols=80  Identities=11%  Similarity=0.080  Sum_probs=57.0

Q ss_pred             CccCCcHHHHHHHHhcCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCc---cccccCCCChHHHHHHhhhhH
Q psy12915          1 MVLNNRLECVVALLSRMADV---ELVDNSGNTALHLAARGKNPAIVQALIVFGANI---NALCREGTFQGPDCCNIFKRW   74 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~---~~~~~~g~tpl~~a~~~~~~~   74 (91)
                      |+..|+.+++++|+..|+..   +..+..+.+|||+|+..|+.+++++|++.|+++   +..+.. .||||+|+. .+..
T Consensus        99 Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~-~G~~  176 (376)
T 2aja_A           99 AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE-NGHL  176 (376)
T ss_dssp             HHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH-TTCH
T ss_pred             HHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH-CCCH
Confidence            46789999999999998732   123345779999999999999999999999762   333334 999999997 3334


Q ss_pred             HHHHHHhc
Q psy12915         75 RTLKRLAG   82 (91)
Q Consensus        75 ~~~~~~~~   82 (91)
                      +.+..+.+
T Consensus       177 eiv~~Ll~  184 (376)
T 2aja_A          177 HVLNRLCE  184 (376)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	91
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 5e-14
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 2  VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               L  V  LL R A   + +    T LH+AAR  +  + + L+   A +NA  ++ 
Sbjct: 8  SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-09
 Identities = 17/73 (23%), Positives = 21/73 (28%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
                 E    LL   A V        T LH AAR  +  +V+ L+   AN N     G 
Sbjct: 41  ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH 100

Query: 62  FQGPDCCNIFKRW 74
                        
Sbjct: 101 TPLHIAAREGHVE 113

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-09
 Identities = 11/45 (24%), Positives = 16/45 (35%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
                 + V  LL   A    V + G T L +A R    ++   L
Sbjct: 338 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-09
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG--T 61
             ++     LL R A       +G T LH+A    N  IV+ L+  G + ++    G   
Sbjct: 142 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 201

Query: 62  FQGPDCCNIFKRWRTL 77
                  N  +  R+L
Sbjct: 202 LHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 8e-08
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
              ++ V  LL   ADV      G + LH AA+  +  IV  L+  GA+ N +  +G
Sbjct: 307 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 363

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREG 60
          T LH+A+   +  IV+ L+  GA+ N    + 
Sbjct: 2  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKV 33

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 5e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCRE 59
                 E V  LLS+ A+  L + SG T LHL A+  +  +   LI  G  ++A  R 
Sbjct: 239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 7e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 15  SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            + A    +   G T LH+AA+     + + L+   A+ NA  + G
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 165

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.001
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            N++E   +LL            G T LHLAA+  +  +V  L+   AN N   + G
Sbjct: 208 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 264

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (72), Expect = 0.004
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           V +N L+ V  LL R         +G T LH+AA+     + ++L+ +G + NA   +G
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 231

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 8e-12
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 4   NNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
              L  V  LL +   ++   D+ G TAL LA   K   I + L   GA+ + 
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-07
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 13  LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREG 60
           LL   ADV +    G T L LA   K+  +VQ L+      IN    +G
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-06
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 2  VLNNRLECVVALLSRMADVELVDN-SGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          V N  ++ V  LL   A+V   +   G T LH A +     IV+ L+  GA+     + G
Sbjct: 13 VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72

Query: 61 TFQGPDCCNIFKRW 74
                        
Sbjct: 73 ATPFLLAAIAGSVK 86

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 17  MADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCNIFKRW 74
             D E +   G TAL  AA   +  +++ L+   GA++NA    G              
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           N  L  A + ++  +VQ L+  GAN+N    EG
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG 38

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 7e-11
 Identities = 14/51 (27%), Positives = 17/51 (33%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA 51
            V       +  LL   AD       G T L  A    NP + + L   GA
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 9e-07
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
          V   G+TALHLA   ++   +  L+ F A    L
Sbjct: 5  VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL 38

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 2e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 2  VLNNRLECVVALLSRMADVELV---DNSGNTALHLAARGKNP 40
          V++     +  LL   A  E +   ++ G TALHLAA     
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 2e-10
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
                  E +  L+    DV + D  G T LH AA        + L+    ++ A+ + G
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
               + E    L+  + D+E V+  G TA  +A       I+  L       N L
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED----ILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.8 bits (86), Expect = 4e-05
 Identities = 23/73 (31%), Positives = 31/73 (42%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
             +   E V+ LL R AD+   +  G TALH A    N  +V+ L+  GANIN    EG 
Sbjct: 48  CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW 107

Query: 62  FQGPDCCNIFKRW 74
                  +     
Sbjct: 108 IPLHAAASCGYLD 120

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 9/38 (23%), Positives = 13/38 (34%)

Query: 23 VDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
          V          A    +   V  L+  GA+IN    +G
Sbjct: 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG 73

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 4e-10
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
               R+E V+ L+ + A VE VD + +TA  LA    +  IV    
Sbjct: 229 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 4e-07
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 24  DNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           D  G T + LAA+     +V  LI  GA++ A+    
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 254

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.9 bits (81), Expect = 2e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 10 VVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVF--------GANINALCREG 60
          +   ++R   V ++D     T LH  A   +    + LIV         GA++NA+  + 
Sbjct: 16 ITEPITR-ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 74

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 2e-09
 Identities = 9/51 (17%), Positives = 19/51 (37%)

Query: 5   NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
           + L+ +  LL+    V+++      A  LAA   +  ++  L         
Sbjct: 104 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 4   NNRLECVVALLSRMADVEL-----VDNSGNTALHLAARGKNPAIVQALIVFGANINAL 56
              L+ +  LLS      L     +    N  L LA R  N      L+    ++ AL
Sbjct: 289 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-SVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 6e-05
 Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 2/73 (2%)

Query: 4   NNRLECVVALLSRMADVELVD--NSGNTALHLAARGKNPAIVQALIVFGANINALCREGT 61
           N  L  +  L        +         A  LAA   +  ++  L            +  
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 62  FQGPDCCNIFKRW 74
                      R 
Sbjct: 196 NYYAFRWAAVGRG 208

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 5/56 (8%), Positives = 12/56 (21%), Gaps = 3/56 (5%)

Query: 8   ECVVALLSRMADVELVDNSGNTALHLAARGKNPAI---VQALIVFGANINALCREG 60
                     +D             +AA     +    +  L+     +  +  E 
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 4e-09
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 18  ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
             +   D++G+T L++AAR  N +IV AL+ +GA+     + G
Sbjct: 250 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 292

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 1e-07
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 2   VLNNRLECVVALLSRMADVEL-VDNSGNTALHLAARGKNPAIVQALIVFGANINA 55
             +   E   A  +   ++ + VD  GNT LH      N  +V+ L+  G+N   
Sbjct: 81  FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY 135

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAA 35
                +  V ALL   AD  + + SG   +   A
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.5 bits (111), Expect = 1e-08
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
               E   ALL   A+ E+ D+       +A+   +  IV+ L
Sbjct: 166 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 5e-07
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 8  ECVVALLSRMADV-ELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPD 66
          + +  LL++ A++   +D +G T+LHLAAR       + L+  GA+ N+    G      
Sbjct: 3  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 67 CCNIFKRW 74
                  
Sbjct: 63 AVAADAMG 70

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-08
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 2   VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQ 44
                L  V  L+   AD  L +   +T L +A   +   I++
Sbjct: 185 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 7e-05
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 27 GNTALHLAARGKNPAIVQALIVF----GANINALCREG 60
          G+T LH+A    N   V  L+      G  ++      
Sbjct: 3  GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR 40

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.001
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 2  VLNNRLECVVALLSRM----ADVELVDNSGNTALHLAAR 36
          V+   L  V  L++       ++++ +N   T LHLA  
Sbjct: 11 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (71), Expect = 0.004
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 25  NSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            SG++ALH A+      +V+ L+  GA+ +      
Sbjct: 175 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-08
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALI 47
             R+E    L+S+ A + + +    T L +A  G    I++ ++
Sbjct: 179 EERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG-LGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 7e-07
 Identities = 19/52 (36%), Positives = 24/52 (46%)

Query: 9   CVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
            V ALL + A V  V+ +G T LH AA      I   L+  GAN +A     
Sbjct: 85  IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 136

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%)

Query: 1   MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
               NR E  V LL   A+ +  D+   TA+H AA   N  ++  L+ + A+ N    EG
Sbjct: 110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG 169

Query: 61  TFQGPDCCN 69
                  C+
Sbjct: 170 NTPLHLACD 178

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.001
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 4  NNRLECVVALL-SRMADVELVDNSGNTALHLAAR 36
          + +LE +   + +  +     D    TALH A  
Sbjct: 13 SGKLEELKESILADKSLATRTDQDSRTALHWACS 46

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.001
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
              L+ +  LL   A   + D  GNT LHLA   +     + L+  GA+I    +E 
Sbjct: 146 KGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-07
 Identities = 12/49 (24%), Positives = 15/49 (30%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
               + V  LL   ADV  V   G +   L     +  I Q L      
Sbjct: 155 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-05
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 27 GNTALHLAARGKNPA----IVQALIVFGANINALCREG 60
          G++ LHLA   +  A    +++ +    A +N      
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ 39

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (72), Expect = 0.004
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 7  LECVVALLSRMADVELVDNSGNTALHLAAR 36
          +E +  +   +A +   +N   T LHLA  
Sbjct: 19 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 3e-07
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 1   MVLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIVFGAN 52
            +     +  V L+ +  A+ +LVDN G  A  +A    N  + +  +    +
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-06
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 1/74 (1%)

Query: 2  VLNNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREG 60
           + N    V  LL S+ + +   D  G   LH +   +   I   L+    N+N      
Sbjct: 8  CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 67

Query: 61 TFQGPDCCNIFKRW 74
                        
Sbjct: 68 DSGWTPFHIACSVG 81

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 3e-04
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 28 NTALHLAARGKNPAIVQALIV-FGANINALCREG 60
          N  LH A        VQ L+    + +    ++G
Sbjct: 1  NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDG 34

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-06
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 16  RMADVELVDNSGNTALHLAARGKNPAIVQALI 47
             +D+   D  G T L LA +     +V  L 
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 6e-06
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 29 TALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
            L  AA   +   + +L+    N+NA    G              
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEI 48

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 3e-04
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 17  MADVELVDNSGNTALHLAARGKNPAIVQALI 47
            ++V   ++ G+TA  LA       +V  + 
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 4   NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQAL 46
           +N  E V  L+   ADV        TA  ++    N  + + L
Sbjct: 110 HNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (82), Expect = 1e-04
 Identities = 8/48 (16%), Positives = 11/48 (22%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
              L  AAR      V+ L+  GA         +             
Sbjct: 2  LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFST 49

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 18  ADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC 57
           A +E+ + SG T L +A R K+    + L    +      
Sbjct: 105 ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 2  VLNNRLECVVALLSRMADV------ELVDNSGNTALHLAAR---GKNPAIVQALIVFGAN 52
          V    +  ++   +   D+              TALHLA R     +  IV  L+    N
Sbjct: 14 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN 73

Query: 53 INALCREGTFQGPDCCNIFKRW 74
          ++    +G+     CC      
Sbjct: 74 LDKQTGKGSTALHYCCLTDNAE 95

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 5e-04
 Identities = 13/48 (27%), Positives = 15/48 (31%)

Query: 27 GNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRW 74
              L  AA       V+AL+  GAN NA    G            R 
Sbjct: 3  SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.8
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.76
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.74
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.74
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.72
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.7
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.69
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.69
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.68
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.67
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.65
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.64
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.63
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.63
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.63
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.62
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.62
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.6
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.6
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.58
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.5
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.48
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.47
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.44
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.44
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.43
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.43
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.37
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.36
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.29

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=99.55  Aligned_cols=81  Identities=26%  Similarity=0.297  Sum_probs=72.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++++..|.+|.||||+|+. .+....+..+
T Consensus         8 A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~-~g~~~~v~~L   86 (130)
T d1ycsb1           8 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS-CNNVQVCKFL   86 (130)
T ss_dssp             HHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccch-hhHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999997 4445555555


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus        87 l~   88 (130)
T d1ycsb1          87 VE   88 (130)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=6.7e-21  Score=96.17  Aligned_cols=81  Identities=23%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      |+..|+.++++.|+++|++++..+..|+||+|+|+..++.+++++++..|++++.+|..|.||||+|+. .+....+..+
T Consensus         9 A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~-~~~~~~v~~L   87 (118)
T d1myoa_           9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY-EGHVSCVKLL   87 (118)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHT-TTCCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhh-cCchhhhhhh
Confidence            578899999999999999999999999999999999999999999999999999999999999999997 4444444445


Q ss_pred             hc
Q psy12915         81 AG   82 (91)
Q Consensus        81 ~~   82 (91)
                      ++
T Consensus        88 l~   89 (118)
T d1myoa_          88 LS   89 (118)
T ss_dssp             HT
T ss_pred             hc
Confidence            44

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=7.6e-20  Score=96.06  Aligned_cols=77  Identities=19%  Similarity=0.157  Sum_probs=67.9

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      .++.+++++|+.+|++++.+|..|+||||+|+..++.+++++|++.|++++.+|.+|.||+++|+. .+....+..+.
T Consensus        58 ~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~-~~~~~i~~~L~  134 (154)
T d1dcqa1          58 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR-LKHEHCEELLT  134 (154)
T ss_dssp             TTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHH-cCCHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999997 44343443333

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.9e-19  Score=89.99  Aligned_cols=78  Identities=18%  Similarity=0.074  Sum_probs=67.1

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCC-hHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGN-TALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      +..|+.+++++|+.+|++++..+..+. +|||+|+..|+.+++++|++.|++++.+|..|.||+++|+.  .++.+++.+
T Consensus        43 a~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~--~g~~~~v~~  120 (125)
T d1bi7b_          43 MMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE--LGHRDVARY  120 (125)
T ss_dssp             SCTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH--HTCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHH--cCCHHHHHH
Confidence            567899999999999999998887654 79999999999999999999999999999999999999996  444444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus       121 L  121 (125)
T d1bi7b_         121 L  121 (125)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.3e-19  Score=91.37  Aligned_cols=68  Identities=22%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      |+..|+.+++++|+.+|++++.+|..|+||||+|+..++.+++++|++.|++++.+|.+|.||+++|.
T Consensus        42 A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          42 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            35678899999999999999999999999999999999999999999999999999999999999985

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.4e-18  Score=88.43  Aligned_cols=77  Identities=23%  Similarity=0.218  Sum_probs=69.0

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      ...+.+.++.+...+++.+.++..|+||||+|+..++.+++++|++.|++++..|.+|.||+++|+.  +++.+++.++
T Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~--~g~~eiv~lL  152 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID--NGNEDLAEIL  152 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH--TTCHHHHHHH
T ss_pred             ccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHH--cCCHHHHHhC
Confidence            3456788999999999999999999999999999999999999999999999999999999999996  6666666654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=6.1e-18  Score=91.54  Aligned_cols=78  Identities=24%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      +..+...+++.++..+.+++..|..|.||||+|+..|+.++++.|++.|++++.+|..|.|||++|+.  .++.+++.++
T Consensus       131 ~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~--~~~~~iv~lL  208 (209)
T d1ot8a_         131 AAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE--RLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH--TTCHHHHHHH
T ss_pred             cccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH--cCCHHHHhhc
Confidence            34678889999999999999999999999999999999999999999999999999999999999996  5556666654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.3e-18  Score=99.41  Aligned_cols=80  Identities=23%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      ||..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|++.|++++.++.+|.||+++|+. .+....+..+
T Consensus         7 Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~-~g~~~~~~~L   85 (408)
T d1n11a_           7 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR-IGHTNMVKLL   85 (408)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999999997 4444443333


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      +
T Consensus        86 l   86 (408)
T d1n11a_          86 L   86 (408)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.8e-17  Score=90.95  Aligned_cols=78  Identities=26%  Similarity=0.204  Sum_probs=57.7

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      ..++..+++.|...+.+++..|..|+||||+|+..++.+++++|++.|++++.+|.+|+|||++|.  ......+..+++
T Consensus       145 ~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~--~~~~~i~~~Ll~  222 (223)
T d1uoha_         145 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK--GGLGLILKRMVE  222 (223)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC--TTHHHHHHHHHC
T ss_pred             hcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--CCCHHHHhcccC
Confidence            456667777777777777777777888888888888888888888888888888888888888875  333444444444

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=6.6e-18  Score=95.25  Aligned_cols=68  Identities=21%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.++++.|+..|++++.++..|+||||+|+..|+.+++++|++.|++++.+|.+|.|||++|+.
T Consensus       207 ~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         207 AAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             HHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-17  Score=96.17  Aligned_cols=75  Identities=25%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      ..++..+++.++..|++++.+|..|.||||+|+..|+.+++++|++.|++++.+|.+|.|||++|..  .++..++.
T Consensus       306 ~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~--~~~~~iv~  380 (408)
T d1n11a_         306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR--LGYISVTD  380 (408)
T ss_dssp             HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH--TTCHHHHH
T ss_pred             ccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH--cCCHHHHH
Confidence            4567788999999999999999999999999999999999999999999999999999999999996  44444443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3.8e-17  Score=90.63  Aligned_cols=81  Identities=26%  Similarity=0.245  Sum_probs=69.0

Q ss_pred             CccCCcHHHHHHHHhcCCC---CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHH
Q psy12915          1 MVLNNRLECVVALLSRMAD---VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTL   77 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~   77 (91)
                      |+.+|+.+++++|+..|++   ++.++..|.||||+|+..|+.++++.|++.|++++..|..|.|||++|+. ......+
T Consensus        16 A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~-~~~~~~~   94 (255)
T d1oy3d_          16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR-VRAHTCA   94 (255)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT-TTCHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhc-cCchHHH
Confidence            5778999999999999887   55677889999999999999999999999999999999999999999996 3444444


Q ss_pred             HHHhc
Q psy12915         78 KRLAG   82 (91)
Q Consensus        78 ~~~~~   82 (91)
                      ..+.+
T Consensus        95 ~~Ll~   99 (255)
T d1oy3d_          95 CVLLQ   99 (255)
T ss_dssp             HHHSS
T ss_pred             HHHHh
Confidence            44433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.6e-17  Score=84.00  Aligned_cols=77  Identities=19%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      +..++.++++.++.+|++++.+|..|++|||+|+..++.+++++|+ .|++++.+|.+|.|||++|+. .+..+.+..+
T Consensus        76 ~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~-~g~~~iv~~L  152 (156)
T d1bd8a_          76 ARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQ-RGAQDLVDIL  152 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHH-SCCHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHH-cCCHHHHHHH
Confidence            3456777888888888888777777888888888888888887666 577888888888888888885 3333333333

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-17  Score=84.79  Aligned_cols=80  Identities=20%  Similarity=0.141  Sum_probs=67.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCC-ChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGT-FQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~-tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..|+.+++++|+++|++++.++..|.+|+|+|+ .++.+++++|++.|++++..+..+. ||||+|+. .+....+..
T Consensus        10 Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~-~g~~~~v~~   87 (125)
T d1bi7b_          10 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR-EGFLDTLVV   87 (125)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH-HTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            56789999999999999999999999999998775 7899999999999999999998876 69999997 444444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +.+
T Consensus        88 Ll~   90 (125)
T d1bi7b_          88 LHR   90 (125)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-17  Score=84.83  Aligned_cols=80  Identities=23%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCR-EGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~-~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..++.+++++|++.|++++..|..|+||||+|+..|+.+++++|++.|++++..+. .+.||++++.....++.+++.
T Consensus        41 A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~  120 (130)
T d1ycsb1          41 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  120 (130)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             ccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHH
Confidence            4567899999999999999999999999999999999999999999999999997764 588998877543344444443


Q ss_pred             H
Q psy12915         80 L   80 (91)
Q Consensus        80 ~   80 (91)
                      +
T Consensus       121 ~  121 (130)
T d1ycsb1         121 F  121 (130)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2e-16  Score=87.72  Aligned_cols=81  Identities=22%  Similarity=0.175  Sum_probs=68.7

Q ss_pred             CccCCcHHHHHHHHhcCCCCccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELV-DNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKR   79 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~   79 (91)
                      |+..++.+++++|+..+++.+.. +..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+. ....+.+..
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~-~~~~~i~~~  243 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL-RPNPILARL  243 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT-SSCHHHHHH
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-CCCHHHHHH
Confidence            35678999999999999887764 5679999999999999999999999999999999999999999997 444444444


Q ss_pred             Hhc
Q psy12915         80 LAG   82 (91)
Q Consensus        80 ~~~   82 (91)
                      +++
T Consensus       244 Ll~  246 (255)
T d1oy3d_         244 LRA  246 (255)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.65  E-value=6.1e-17  Score=90.48  Aligned_cols=68  Identities=22%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             ccCCcHHHHHH--------HHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVA--------LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~--------L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.++++.        ++..|++++.+|..|+||||+|+..|+.+++++|++.|++++.++.+|.||+++|..
T Consensus        41 ~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~  116 (277)
T d2fo1e1          41 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA  116 (277)
T ss_dssp             HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhh
Confidence            45566555544        467799999999999999999999999999999999999999999999999999996

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-16  Score=85.79  Aligned_cols=75  Identities=27%  Similarity=0.182  Sum_probs=67.3

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLK   78 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~   78 (91)
                      +..+...+++.++..|...+.+|..|.+|||+|+..|+.+++++|++.|++++.+|.+|.|||++|+.  +++.+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~--~~~~div  226 (228)
T d1k1aa_         152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS--RRVIDIL  226 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS--HHHHHHH
T ss_pred             HHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh--CCCcccc
Confidence            45677889999999999999999999999999999999999999999999999999999999999995  5555543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.8e-16  Score=81.68  Aligned_cols=68  Identities=28%  Similarity=0.306  Sum_probs=63.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|+++|++++..|..|.||||+|+ .++.++++.|++.|++++..+..|.+|++.++.
T Consensus         8 Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           8 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccc
Confidence            56789999999999999999999999999999886 789999999999999999999999999999997

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.7e-15  Score=84.79  Aligned_cols=78  Identities=24%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      .+...++++|+++|++++.++..|.||||+++..++.+++++|+. .|++++.+|.+|.||||+|+. ....+.+..+++
T Consensus       196 ~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~-~~~~eiv~~Ll~  274 (285)
T d1wdya_         196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE-LKLKKIAELLCK  274 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH-cCCHHHHHHHHH
Confidence            345578999999999999999999999999999999999999997 599999999999999999997 444444444443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.63  E-value=7.8e-16  Score=85.93  Aligned_cols=80  Identities=18%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             ccCCcHHHHHHHH-hcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          2 VLNNRLECVVALL-SRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         2 ~~~~~~~~~~~L~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      +..++.+.+++++ ..+.+.+.+|..|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+.  .++.+++.+
T Consensus       195 ~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~--~~~~~iv~l  272 (277)
T d2fo1e1         195 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA--NNHHNIVDI  272 (277)
T ss_dssp             HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH--TTCHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHH--cCCHHHHHH
Confidence            3466778887755 4678888889999999999999999999999999999999999999999999996  555555555


Q ss_pred             hcC
Q psy12915         81 AGG   83 (91)
Q Consensus        81 ~~~   83 (91)
                      +..
T Consensus       273 L~~  275 (277)
T d2fo1e1         273 FDR  275 (277)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=1.2e-15  Score=85.84  Aligned_cols=80  Identities=30%  Similarity=0.272  Sum_probs=70.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      ||..|+.++++.|+++|++++..|..|+||||+|+..|+.+++++|++.|++....+..+.+|++.++. ......+..+
T Consensus        47 A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~-~~~~~~~~~l  125 (291)
T d1s70b_          47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS-CGYLDIAEYL  125 (291)
T ss_dssp             HHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccc-ccccchhhcc
Confidence            567899999999999999999999999999999999999999999999999999999999999999997 3444444444


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       126 ~  126 (291)
T d1s70b_         126 I  126 (291)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.4e-15  Score=78.69  Aligned_cols=81  Identities=25%  Similarity=0.285  Sum_probs=64.7

Q ss_pred             ccCCcHHHHHHHHhcCCCCccc------CCCCChHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCChHHHHHHhhh
Q psy12915          2 VLNNRLECVVALLSRMADVELV------DNSGNTALHLAARG---KNPAIVQALIVFGANINALCREGTFQGPDCCNIFK   72 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~------~~~~~~~l~~a~~~---~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~   72 (91)
                      +..++...+..++..|.+++..      +..|.||||+|+..   +..+++++|++.|++++.+|..|.||||+|+. .+
T Consensus        14 v~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~-~~   92 (154)
T d1dcqa1          14 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL-TD   92 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHH-TT
T ss_pred             HHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccc-cc
Confidence            4567778888888888876654      56689999999964   67889999999999999999999999999997 44


Q ss_pred             hHHHHHHHhcC
Q psy12915         73 RWRTLKRLAGG   83 (91)
Q Consensus        73 ~~~~~~~~~~~   83 (91)
                      ....+..+++.
T Consensus        93 ~~~~v~~Ll~~  103 (154)
T d1dcqa1          93 NAECLKLLLRG  103 (154)
T ss_dssp             CHHHHHHHHHT
T ss_pred             ccccccccccc
Confidence            45555555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.9e-16  Score=84.05  Aligned_cols=79  Identities=30%  Similarity=0.323  Sum_probs=66.6

Q ss_pred             ccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHH
Q psy12915          2 VLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRL   80 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~   80 (91)
                      +..++.+.+++|+..|...+..+ ..|+||||+|+..|+.+++++|++.|++++.+|.+|.||+++|+. ....+.+..+
T Consensus       119 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~-~~~~~~~~~l  197 (221)
T d1iknd_         119 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG-RPSTRIQQQL  197 (221)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT-SSCHHHHHHH
T ss_pred             hhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHH-CCCHHHHHHH
Confidence            45678899999999999887765 569999999999999999999999999999999999999999996 3333333333


Q ss_pred             h
Q psy12915         81 A   81 (91)
Q Consensus        81 ~   81 (91)
                      .
T Consensus       198 ~  198 (221)
T d1iknd_         198 G  198 (221)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=9.2e-16  Score=83.82  Aligned_cols=68  Identities=19%  Similarity=0.152  Sum_probs=58.5

Q ss_pred             ccCCcHHHHHHHHhcC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCChHHHHHH
Q psy12915          2 VLNNRLECVVALLSRM-ADVELVDNSGNTALHLAARGKNPAIVQALIV-FGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         2 ~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +..|+.++++.|+..+ .+++.+|..|+||||+|+..++.+++++|++ .|++++.+|.+|.|||++|..
T Consensus       146 ~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         146 ASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             HHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             hhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            4567888999999877 5678888889999999999999999999986 589999999999999999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.9e-15  Score=81.10  Aligned_cols=66  Identities=30%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          4 NNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         4 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      +|+.+++++|+++|++++..+..+.+|+|+++..+..++++.|...+.+++..|..|.|||++|+.
T Consensus       113 ~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~  178 (223)
T d1uoha_         113 KNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD  178 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccc
Confidence            344444444444444444444444444544444444444444444444555555555555555553

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.58  E-value=7.5e-17  Score=93.56  Aligned_cols=80  Identities=15%  Similarity=0.113  Sum_probs=60.5

Q ss_pred             CccCCcHHHHHH---HHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc--cCCCChHHHHHHhhhhHH
Q psy12915          1 MVLNNRLECVVA---LLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALC--REGTFQGPDCCNIFKRWR   75 (91)
Q Consensus         1 a~~~~~~~~~~~---L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~--~~g~tpl~~a~~~~~~~~   75 (91)
                      |+..|+.++++.   |+..|++++..+..|+||||+|+..|+.+++++|++.|++++..+  ..|.||||+|+. .+..+
T Consensus        97 Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~-~g~~~  175 (346)
T d2ajaa1          97 AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE-NGHLH  175 (346)
T ss_dssp             HHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHH-TTCHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHH-HhhHH
Confidence            466788776655   688899999998889999999999999999999999999988876  458999999996 33344


Q ss_pred             HHHHHh
Q psy12915         76 TLKRLA   81 (91)
Q Consensus        76 ~~~~~~   81 (91)
                      .+..+.
T Consensus       176 iv~~Ll  181 (346)
T d2ajaa1         176 VLNRLC  181 (346)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-13  Score=71.06  Aligned_cols=67  Identities=22%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      ..++.+++++|+..+.+++..+..+.+|++.++..++.++++.+++.|++++.++..|.|||++|+.
T Consensus        44 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~  110 (156)
T d1bd8a_          44 MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ  110 (156)
T ss_dssp             CTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccc
Confidence            3567777788888777777777777788888888888888888888888888888888888888886

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.7e-13  Score=70.78  Aligned_cols=80  Identities=21%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHH---------------------------------HHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAI---------------------------------VQALI   47 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---------------------------------~~~ll   47 (91)
                      |+..|+.++++.|+.+|++++ .|..|+||||+|+..++.+.                                 ++.+.
T Consensus         9 Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (153)
T d1awcb_           9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            567899999999999999876 57889999999877765554                                 44555


Q ss_pred             hcCCCccccccCCCChHHHHHHhhhhHHHHHHHhc
Q psy12915         48 VFGANINALCREGTFQGPDCCNIFKRWRTLKRLAG   82 (91)
Q Consensus        48 ~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~   82 (91)
                      ..+++++.++..|.|||++|+. .+....+..+.+
T Consensus        88 ~~~~~~~~~~~~g~T~L~~A~~-~g~~~iv~~ll~  121 (153)
T d1awcb_          88 KHGADVNAKDMLKMTALHWATE-HNHQEVVELLIK  121 (153)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHH
T ss_pred             ccCCccccccccCchHHHhhhh-cchhheeeeccc
Confidence            6677777888899999999996 444444444443

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-13  Score=73.47  Aligned_cols=69  Identities=29%  Similarity=0.406  Sum_probs=63.6

Q ss_pred             CccCCcHHHHHHHHh----cCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLS----RMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+.+|+.++++.|+.    .|++++.+|..|+||||+|+..++.++++.|++.|++++..+..+.++++.|..
T Consensus        10 A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~   82 (228)
T d1k1aa_          10 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE   82 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccc
Confidence            567899999888874    789999999999999999999999999999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9e-15  Score=79.80  Aligned_cols=73  Identities=22%  Similarity=0.230  Sum_probs=57.7

Q ss_pred             HHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          8 ECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         8 ~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      ++++.+...+++++.+|..|.||||+|+..++.+++++|++.|++++..|..|.||+++++. ......+..+.
T Consensus        20 ~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~-~~~~~~~~~l~   92 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE-QGCLASVGVLT   92 (221)
T ss_dssp             CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH-HTCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc-cccccccchhh
Confidence            34556667888999999999999999999999999999999999999999999999999997 33344433333

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.2e-13  Score=69.89  Aligned_cols=65  Identities=31%  Similarity=0.341  Sum_probs=38.1

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC-CccccccCCCChHHHHHH
Q psy12915          5 NRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGA-NINALCREGTFQGPDCCN   69 (91)
Q Consensus         5 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~-~~~~~~~~g~tpl~~a~~   69 (91)
                      ++...++.++..+.+++..+..+.+|+++|+..++.+.++.|+..+. +++.+|..|.||+|+|+.
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~  142 (156)
T d1ihba_          77 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL  142 (156)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHH
Confidence            44455555555555555555556666666666666666666665543 556666666666666664

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=5.2e-14  Score=80.05  Aligned_cols=49  Identities=31%  Similarity=0.333  Sum_probs=46.8

Q ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHH
Q psy12915         20 VELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCC   68 (91)
Q Consensus        20 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~   68 (91)
                      ++.+|..|+||||+|+..|+.+++++|++.|++++.+|..|.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            5778899999999999999999999999999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=4.3e-13  Score=73.02  Aligned_cols=78  Identities=18%  Similarity=0.081  Sum_probs=66.4

Q ss_pred             cCCcHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCChHHHHHHhhhhHHHHHHHh
Q psy12915          3 LNNRLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFG-ANINALCREGTFQGPDCCNIFKRWRTLKRLA   81 (91)
Q Consensus         3 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g-~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~   81 (91)
                      ..++.++++.|+..+...+..+..|+||+|+++..++.++++.|+..+ .+++.+|.+|.||||+|+. .+..+.+..++
T Consensus       114 ~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~-~~~~~~v~~Ll  192 (229)
T d1ixva_         114 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA-EGHGDAAVLLV  192 (229)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH-TTCHHHHHHHH
T ss_pred             ccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcc-cccHHHHHHHH
Confidence            457889999999999999888999999999999999999999999976 6789999999999999997 33444444444

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.2e-13  Score=77.43  Aligned_cols=54  Identities=22%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             cCCCCccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915         16 RMADVELV-DNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus        16 ~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      .+.+++.. |..|+||||+|+..|+.++++.|++.|++++.+|..|.||||.|+.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~  149 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK  149 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHH
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhh
Confidence            35567755 8889999999999999999999999999999999999999999995

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.37  E-value=2.4e-14  Score=82.94  Aligned_cols=69  Identities=12%  Similarity=-0.007  Sum_probs=58.9

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC--CCCChHHHHHHHcCCHHHHHHHHhcCCCc---cccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD--NSGNTALHLAARGKNPAIVQALIVFGANI---NALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~g~~~---~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.+++++|++.|++++..+  ..|+||||+|+..|+.+++++|++.|++.   +..+..+.||++.|+.
T Consensus       133 Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~  206 (346)
T d2ajaa1         133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  206 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             HHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh
Confidence            578999999999999999988765  35899999999999999999999998765   4445667788888885

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.8e-12  Score=70.98  Aligned_cols=69  Identities=26%  Similarity=0.234  Sum_probs=63.6

Q ss_pred             CccCCcHHHHHHHHhcCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHH
Q psy12915          1 MVLNNRLECVVALLSRMADVELVD-NSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCN   69 (91)
Q Consensus         1 a~~~~~~~~~~~L~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~   69 (91)
                      |+..|+.++++.|+++|++++.++ ..|+||||+|+..++.+++++|+..+......+..+.+|...+..
T Consensus        12 Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_          12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhh
Confidence            577899999999999999998775 469999999999999999999999999999999999999999886

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.29  E-value=2.9e-11  Score=64.85  Aligned_cols=77  Identities=29%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             cHHHHHHHHhcCCCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCChHHHHHHhhhhHHHHHHHhcC
Q psy12915          6 RLECVVALLSRMADVELVDNSGNTALHLAARGKNPAIVQALIVFGANINALCREGTFQGPDCCNIFKRWRTLKRLAGG   83 (91)
Q Consensus         6 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~g~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~   83 (91)
                      .....+.|...+++++..+..|.||+++++..+...++..++..+.+++..|..|.||||.|+. .+....+..+++.
T Consensus       102 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~-~g~~~~v~~Ll~~  178 (209)
T d1ot8a_         102 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR-EGSYEASKALLDN  178 (209)
T ss_dssp             CTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT
T ss_pred             chhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhcc-ccHHHHHHHHHHC
Confidence            4456778888999999999999999999999999999999999999999999999999999997 4455555555554