Psyllid ID: psy1294

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MKVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccccccccccccccccEEccccccccccccccEEccccccccccccHHccccccccccccEEcccccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkvmkcdlfndsksastfATTGVEWCQsqgkvmcgiypdvqcydnrtqacdsvadcdnmkdekhchtgtlpvvlslqcgsgetytkeqhcngvldckdgsdemhc
Flexible Loop (DISEMBL)
mkvmkcdlfndsksasTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGEtytkeqhcngvldckdgsdemhc
Low Complexity Region (SEG)
MKVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC
Disordered region (IsUnstruct)
***************STFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDC*********
Disordered Region (DISOPRED)
MKVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC
Disordered Region (DISEMBL)
MKVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC
Disordered Region (DISPRO)
MKVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVL*C*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q91VN0	1614	Low-density lipoprotein r	yes	N/A	0.590	0.038	0.415	6e-07
O75197	1615	Low-density lipoprotein r	yes	N/A	0.590	0.038	0.415	1e-06
P98156	873	Very low-density lipoprot	no	N/A	0.561	0.067	0.430	8e-06
P98155	873	Very low-density lipoprot	no	N/A	0.561	0.067	0.430	8e-06
P35953	873	Very low-density lipoprot	yes	N/A	0.561	0.067	0.430	8e-06
P98166	873	Very low-density lipoprot	yes	N/A	0.561	0.067	0.430	9e-06
Q8IU80	811	Transmembrane protease se	no	N/A	0.619	0.080	0.366	9e-06
Q8BIK6	829	Transmembrane protease se	no	N/A	0.533	0.067	0.350	4e-05
Q7RTY8	843	Transmembrane protease se	no	N/A	0.523	0.065	0.396	4e-05
O88572	1613	Low-density lipoprotein r	no	N/A	0.590	0.038	0.338	6e-05

>sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 41   QCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGS 100
            QC D R + CD  ADC +  DE +C    LP     +C SG+    +Q C+   DC DGS
Sbjct: 1308 QCVDLRLR-CDGEADCQDRSDEANCDAVCLPN--QFRCTSGQCVLIKQQCDSFPDCADGS 1364

Query: 101  DEMHC 105
            DE+ C
Sbjct: 1365 DELMC 1369

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation.
Mus musculus (taxid: 10090)

>sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 41   QCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGS 100
            QC D R + CD  ADC +  DE  C    LP     +C SG+    +Q C+   DC DGS
Sbjct: 1309 QCVDLRLR-CDGEADCQDRSDEADCDAICLPN--QFRCASGQCVLIKQQCDSFPDCIDGS 1365

Query: 101  DEMHC 105
            DE+ C
Sbjct: 1366 DELMC 1370

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation.

Homo sapiens (taxid: 9606)

>sp|P98156|VLDLR_MOUSE Very low-density lipoprotein receptor OS=Mus musculus GN=Vldlr PE=1 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 47  TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGETYTKEQHCNGVLDCKDGS 100
           +  CD  ADC +  DE     G  PV+ +      +QCGSGE   K+  C+G  DCKDGS
Sbjct: 209 SWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGECIHKKWRCDGDPDCKDGS 268

Query: 101 DEMHC 105
           DE++C
Sbjct: 269 DEVNC 273

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Mus musculus (taxid: 10090)

>sp|P98155|VLDLR_HUMAN Very low-density lipoprotein receptor OS=Homo sapiens GN=VLDLR PE=1 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 47  TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGETYTKEQHCNGVLDCKDGS 100
           +  CD  ADC +  DE     G  PV+ +      +QCGSGE   K+  C+G  DCKDGS
Sbjct: 209 SWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGS 268

Query: 101 DEMHC 105
           DE++C
Sbjct: 269 DEVNC 273

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Homo sapiens (taxid: 9606)

>sp|P35953|VLDLR_RABIT Very low-density lipoprotein receptor OS=Oryctolagus cuniculus GN=VLDLR PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 47  TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGETYTKEQHCNGVLDCKDGS 100
           +  CD  ADC +  DE     G  PV+ +      +QCGSGE   K+  C+G  DCKDGS
Sbjct: 209 SWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGS 268

Query: 101 DEMHC 105
           DE++C
Sbjct: 269 DEVNC 273

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Oryctolagus cuniculus (taxid: 9986)

>sp|P98166|VLDLR_RAT Very low-density lipoprotein receptor OS=Rattus norvegicus GN=Vldlr PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 47  TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGETYTKEQHCNGVLDCKDGS 100
           +  CD  ADC +  DE     G  PV+ +      +QCGSGE   K+  C+G  DCKDGS
Sbjct: 209 SWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGECIHKKWRCDGDPDCKDGS 268

Query: 101 DEMHC 105
           DE++C
Sbjct: 269 DEVNC 273

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Rattus norvegicus (taxid: 10116)

>sp|Q8IU80|TMPS6_HUMAN Transmembrane protease serine 6 OS=Homo sapiens GN=TMPRSS6 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 41  QCYDNRT-----QACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQ-HCNGVL 94
           QC ++ T     + CD   DC N  DE+ C  G      + QC       K    C+G  
Sbjct: 496 QCKEDSTCISLPKVCDGQPDCLNGSDEEQCQEGVPCGTFTFQCEDRSCVKKPNPQCDGRP 555

Query: 95  DCKDGSDEMHC 105
           DC+DGSDE HC
Sbjct: 556 DCRDGSDEEHC 566

Serine protease which hydrolyzes a range of proteins including type I collagen, fibronectin and fibrinogen. Can also activate urokinase-type plasminogen activator with low efficiency. May play a specialized role in matrix remodeling processes in liver. Required to sense iron deficiency. Overexpression suppresses activation of the HAMP promoter.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8BIK6|TMPS7_MOUSE Transmembrane protease serine 7 OS=Mus musculus GN=Tmprss7 PE=1 SV=3

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 50  CDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQ-HCNGVLDCKDGSDEMHC 105
           CD   DC++ +DE++C         + +CG+   + K+   C+G++DC DGSDE  C
Sbjct: 524 CDGFRDCEDGQDEQNCTRSIPCTSRTFKCGNDICFRKQNAQCDGIVDCPDGSDEEGC 580

Serine protease which preferentially hydrolyzes peptides with Arg at the P1 position.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q7RTY8|TMPS7_HUMAN Transmembrane protease serine 7 OS=Homo sapiens GN=TMPRSS7 PE=2 SV=3

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 50  CDSVADCDNMKDEKHCHTGTLPVV-LSLQCGSGETYTKEQ-HCNGVLDCKDGSDEMHC 105
           CD   DC+N +DE++C T ++P    + +CG+   + K+   C+G +DC DGSDE  C
Sbjct: 538 CDGFRDCENGRDEQNC-TQSIPCNNRTFKCGNDICFRKQNAKCDGTVDCPDGSDEEGC 594

Serine protease which preferentially hydrolyzes peptides with Arg at the P1 position.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 41   QCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGS 100
            QC D   + C+  A+C +  DEK+C    L ++   +C +G+   K + C+  +DC D S
Sbjct: 1299 QCIDGALR-CNGDANCQDKSDEKNCEV--LCLIDQFRCANGQCVGKHKKCDHSVDCSDRS 1355

Query: 101  DEMHC 105
            DE+ C
Sbjct: 1356 DELDC 1360

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
301614657	4553	PREDICTED: low-density lipoprotein recep	0.542	0.012	0.433	4e-06
347963560	1075	AGAP000303-PA [Anopheles gambiae str. PE	0.752	0.073	0.367	6e-06
348519841	4657	PREDICTED: LOW QUALITY PROTEIN: low-dens	0.504	0.011	0.446	6e-06
170041955	978	conserved hypothetical protein [Culex qu	0.847	0.091	0.314	8e-06
345777094	800	PREDICTED: transmembrane protease serine	0.619	0.081	0.380	1e-05
157123305	990	hypothetical protein AaeL_AAEL009482 [Ae	0.847	0.089	0.323	2e-05
148234168	1605	low density lipoprotein receptor-related	0.485	0.031	0.431	2e-05
432934618	4704	PREDICTED: low-density lipoprotein recep	0.504	0.011	0.464	2e-05
324500824	1566	Low-density lipoprotein receptor-related	0.733	0.049	0.392	2e-05
3641529	1614	low-density lipoprotein receptor-related	0.590	0.038	0.415	2e-05

>gi|301614657|ref|XP_002936802.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Xenopus (Silurana) tropicalis]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 46  RTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           R   CD + DC +  DE++C     PV   L CGSG  Y + Q C+G++DC+D SDE +C
Sbjct: 152 RAYRCDRMKDCTDGADERNC---LYPVCTELSCGSGACYNRSQRCDGIVDCRDSSDESNC 208

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|347963560|ref|XP_310822.5| AGAP000303-PA [Anopheles gambiae str. PEST] gi|333467140|gb|EAA06527.5| AGAP000303-PA [Anopheles gambiae str. PEST]

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 20  TTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCG 79
           +TGV+ C S+     G   ++Q     ++ CD VADC ++ DE  C   T     ++ CG
Sbjct: 491 STGVQSCHSKP----GCTGELQANALSSRLCDGVADCADLSDENTC---TFCAYGAISCG 543

Query: 80  -SGETYTKEQHCNGVLDCKDGSDEMHC 105
            S   Y +   C+G LDC DGSDE  C
Sbjct: 544 RSRACYARNARCDGKLDCPDGSDEKDC 570

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348519841|ref|XP_003447438.1| PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 2-like [Oreochromis niloticus]

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 50  CDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           CD +ADC +  DE++CH    P    L+C +G  Y + Q C+ +LDC+DGSDE +C
Sbjct: 102 CDRLADCSDGSDERNCH---YPECTQLRCANGACYNRTQRCDQILDCRDGSDEANC 154

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170041955|ref|XP_001848710.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865522|gb|EDS28905.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 16/105 (15%)

Query: 2   KVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKD 61
           + M C+ F +S        TG++ C S+     G   ++Q     ++ CD VADC ++ D
Sbjct: 418 RFMDCERFPES--------TGIQSCHSRP----GCSGELQSNALSSRMCDGVADCPDLSD 465

Query: 62  EKHCHTGTLPVVLSLQCGSGET-YTKEQHCNGVLDCKDGSDEMHC 105
           E  C   T     ++ CG G   Y +   C+G +DC DG+DE  C
Sbjct: 466 ENTC---TFCAYGAIYCGRGRVCYARNARCDGKIDCPDGADEKDC 507

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345777094|ref|XP_850550.2| PREDICTED: transmembrane protease serine 6 isoform 2 [Canis lupus familiaris]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 41  QCYDNRT-----QACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQ-HCNGVL 94
           QC ++ T     + CD   DC N  DE+HC  G      + QC       K    C+G+ 
Sbjct: 485 QCQEDSTCISLSRVCDRQPDCLNGSDEEHCQEGVPCGTFTFQCEDRSCVKKPNPQCDGLP 544

Query: 95  DCKDGSDEMHC 105
           DC+DGSDE HC
Sbjct: 545 DCRDGSDEQHC 555

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157123305|ref|XP_001660107.1| hypothetical protein AaeL_AAEL009482 [Aedes aegypti] gi|108874419|gb|EAT38644.1| AAEL009482-PA [Aedes aegypti]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 16/105 (15%)

Query: 2   KVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKD 61
           K + C+ F +S        T ++ C S+     G   ++Q     ++ CD VADC ++ D
Sbjct: 432 KFLDCERFPES--------TAIQSCHSRP----GCASELQSNALSSRLCDGVADCPDLSD 479

Query: 62  EKHCHTGTLPVVLSLQCGSGET-YTKEQHCNGVLDCKDGSDEMHC 105
           E  C   T     ++ CG G   Y K   C+G +DC DGSDE  C
Sbjct: 480 ENTC---TFCPYGAIYCGRGRACYAKNARCDGKMDCPDGSDEKDC 521

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148234168|ref|NP_001079163.1| low density lipoprotein receptor-related protein 5 precursor [Xenopus laevis] gi|22854902|gb|AAN09806.1| lipoprotein receptor-related protein 5 [Xenopus laevis]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 50   CDSVADCDNMKDEKHCHTGTLPVVLS--LQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
            CD  ++CD+  DE++C     PV  S   QCG G+     Q CNG  DC+D SDE+ C
Sbjct: 1272 CDGFSECDDHSDEENC-----PVCSSNQFQCGKGQCIDARQKCNGEFDCQDKSDELDC 1324

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432934618|ref|XP_004081957.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Oryzias latipes]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 50  CDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           CD +ADC +  DE+HC+    P    L+C +G  Y + Q C+ VLDC+DGSDE +C
Sbjct: 145 CDHMADCSDGSDERHCN---YPECTQLRCTNGACYDRTQRCDHVLDCRDGSDEANC 197

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|324500824|gb|ADY40376.1| Low-density lipoprotein receptor-related protein 1B, partial [Ascaris suum]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 7/84 (8%)

Query: 24   EWCQSQGKVMCGIYPDVQCYDNR----TQACDSVADCDNMKDEKHCHTGTLPVVLSLQCG 79
            E C+S  +  CG+    +C + +    +  CD  ADC +  DE+HCH G LP  L  +CG
Sbjct: 1030 EGCESSQRDECGV-AQFRCLNGKCIAASYVCDGAADCRDGSDERHCHQGCLP-GLEFRCG 1087

Query: 80   SGET-YTKEQHCNGVLDCKDGSDE 102
             G    +    C+GV+DC DGSDE
Sbjct: 1088 PGLPCLSATLLCDGVVDCDDGSDE 1111

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|3641529|gb|AAC36468.1| low-density lipoprotein receptor-related protein 5 [Mus musculus]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 41   QCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGS 100
            QC D R + CD  ADC +  DE +C    LP     +C SG+    +Q C+   DC DGS
Sbjct: 1308 QCVDLRLR-CDGEADCQDRSDEANCDAVCLPN--QFRCTSGQCVLIKQQCDSFPDCADGS 1364

Query: 101  DEMHC 105
            DE+ C
Sbjct: 1365 DELMC 1369

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
UNIPROTKB|F1PIB4	4549	LRP2 "Uncharacterized protein"	0.685	0.015	0.4	7.5e-09
UNIPROTKB|Q8NAN7	752	VLDLR "cDNA FLJ35062 fis, clon	0.676	0.094	0.390	2.3e-08
UNIPROTKB|E7CXS1	845	Vldlr "Uncharacterized protein	0.676	0.084	0.390	2.7e-08
RGD|3963	873	Vldlr "very low density lipopr	0.676	0.081	0.390	2.8e-08
UNIPROTKB|P98166	873	Vldlr "Very low-density lipopr	0.676	0.081	0.390	2.8e-08
MGI|MGI:98935	873	Vldlr "very low density lipopr	0.676	0.081	0.390	2.8e-08
UNIPROTKB|P98155	873	VLDLR "Very low-density lipopr	0.676	0.081	0.390	2.8e-08
UNIPROTKB|P98165	863	VLDLR "Very low-density lipopr	0.676	0.082	0.390	4.5e-08
UNIPROTKB|F1NC45	865	VLDLR "Very low-density lipopr	0.676	0.082	0.390	4.6e-08
ZFIN|ZDB-GENE-040426-803	866	vldlr "very low density lipopr	0.638	0.077	0.402	4.6e-08

UNIPROTKB|F1PIB4 LRP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 7.5e-09, P = 7.5e-09
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query:    26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYT 85
             C SQ ++ C    D +C  N  + CD V DC +  DEK CH    P    L C +G  Y 
Sbjct:    82 CSSQ-QITCS---DGECIPNEYR-CDRVRDCSDGTDEKDCH---YPTCEQLTCANGACYN 133

Query:    86 KEQHCNGVLDCKDGSDEMHC 105
               Q C+G +DC+D SDE +C
Sbjct:   134 SSQKCDGKVDCRDFSDENNC 153

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q8NAN7 VLDLR "cDNA FLJ35062 fis, clone OCBBF2019195, highly similar to VERY LOW-DENSITY LIPOPROTEIN RECEPTOR" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGET 83
             CG + + QC  +     +  CD  ADC +  DE     G  PV+ +      +QCGSGE 
Sbjct:    72 CGAH-EFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGEC 130

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   131 IHKKWRCDGDPDCKDGSDEVNC 152

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E7CXS1 Vldlr "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 139 (54.0 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGET 83
             CG + + QC  +     +  CD  ADC +  DE     G  PV+ +      +QCGSGE 
Sbjct:   193 CGAH-EFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGEC 251

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   252 IHKKWRCDGDPDCKDGSDEVNC 273

GO:1900006 "positive regulation of dendrite development" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0038025 "reelin receptor activity" evidence=IEA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IEA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

RGD|3963 Vldlr "very low density lipoprotein receptor" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGET 83
             CG + + QC  +     +  CD  ADC +  DE     G  PV+ +      +QCGSGE 
Sbjct:   193 CGAH-EFQCRTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGEC 251

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   252 IHKKWRCDGDPDCKDGSDEVNC 273

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001666 "response to hypoxia" evidence=IEP

GO:0001948 "glycoprotein binding" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005905 "coated pit" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0007507 "heart development" evidence=IEP

GO:0007584 "response to nutrient" evidence=IEP

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0009986 "cell surface" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEP

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IEA;ISO;ISS

GO:0030296 "protein tyrosine kinase activator activity" evidence=TAS

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IEA;ISO

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA;ISO

GO:0034437 "glycoprotein transporter activity" evidence=IEA;ISO

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IEA;ISO;ISS

GO:0038025 "reelin receptor activity" evidence=IEA;ISO

GO:0038026 "reelin-mediated signaling pathway" evidence=ISO

GO:0042149 "cellular response to glucose starvation" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0045177 "apical part of cell" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA;ISO

GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0061098 "positive regulation of protein tyrosine kinase activity" evidence=TAS

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071347 "cellular response to interleukin-1" evidence=IEP

GO:0071456 "cellular response to hypoxia" evidence=IDA

GO:1900006 "positive regulation of dendrite development" evidence=IEA;ISO

UNIPROTKB|P98166 Vldlr "Very low-density lipoprotein receptor" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGET 83
             CG + + QC  +     +  CD  ADC +  DE     G  PV+ +      +QCGSGE 
Sbjct:   193 CGAH-EFQCRTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGEC 251

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   252 IHKKWRCDGDPDCKDGSDEVNC 273

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:98935 Vldlr "very low density lipoprotein receptor" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGET 83
             CG + + QC  +     +  CD  ADC +  DE     G  PV+ +      +QCGSGE 
Sbjct:   193 CGAH-EFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGEC 251

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   252 IHKKWRCDGDPDCKDGSDEVNC 273

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005905 "coated pit" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=ISO

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034189 "very-low-density lipoprotein particle binding" evidence=ISO

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=ISO

GO:0034437 "glycoprotein transporter activity" evidence=ISO

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=ISO

GO:0038025 "reelin receptor activity" evidence=IGI

GO:0038026 "reelin-mediated signaling pathway" evidence=IGI

GO:0045177 "apical part of cell" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=IGI

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0071456 "cellular response to hypoxia" evidence=ISO

GO:1900006 "positive regulation of dendrite development" evidence=IGI

UNIPROTKB|P98155 VLDLR "Very low-density lipoprotein receptor" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDEKHCHTGTLPVVLS------LQCGSGET 83
             CG + + QC  +     +  CD  ADC +  DE     G  PV+ +      +QCGSGE 
Sbjct:   193 CGAH-EFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGEC 251

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   252 IHKKWRCDGDPDCKDGSDEVNC 273

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005041 "low-density lipoprotein receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0007613 "memory" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IDA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IDA

GO:0034185 "apolipoprotein binding" evidence=ISS;IDA

GO:0001948 "glycoprotein binding" evidence=IPI

GO:0034436 "glycoprotein transport" evidence=IDA

GO:0034437 "glycoprotein transporter activity" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

GO:0048306 "calcium-dependent protein binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0038026 "reelin-mediated signaling pathway" evidence=ISS

GO:1900006 "positive regulation of dendrite development" evidence=ISS

GO:0038025 "reelin receptor activity" evidence=ISS

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IDA

UNIPROTKB|P98165 VLDLR "Very low-density lipoprotein receptor" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDE--KHCHTGTLPVVL----SLQCGSGET 83
             CG++ + QC  +     +  CD  ADC +  DE  + C     P V      +QCGSGE 
Sbjct:   211 CGVH-EFQCKSSTCIPISWVCDDDADCSDHSDESLEQCGRQPAPPVKCSTSEVQCGSGEC 269

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   270 IHKKWRCDGDPDCKDGSDEINC 291

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEP

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0030228 "lipoprotein particle receptor activity" evidence=IC

UNIPROTKB|F1NC45 VLDLR "Very low-density lipoprotein receptor" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%)

Query:    34 CGIYPDVQCYDNR----TQACDSVADCDNMKDE--KHCHTGTLPVVL----SLQCGSGET 83
             CG++ + QC  +     +  CD  ADC +  DE  + C     P V      +QCGSGE 
Sbjct:   211 CGVH-EFQCKSSTCIPISWVCDDDADCSDHSDESLEQCGRQPAPPVKCSTSEVQCGSGEC 269

Query:    84 YTKEQHCNGVLDCKDGSDEMHC 105
               K+  C+G  DCKDGSDE++C
Sbjct:   270 IHKKWRCDGDPDCKDGSDEINC 291

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IEA

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IEA

GO:0038025 "reelin receptor activity" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:1900006 "positive regulation of dendrite development" evidence=IEA

ZFIN|ZDB-GENE-040426-803 vldlr "very low density lipoprotein receptor" [Danio rerio (taxid:7955)]

 Score = 137 (53.3 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 31/77 (40%), Positives = 42/77 (54%)

Query:    39 DVQCYDN----RTQACDSVADCDNMKDE--KHC-HTGTLPVVLS---LQCGSGETYTKEQ 88
             ++ C +N    R+  CD   DC +  DE  + C H  T P   S   +QCGSGE   ++ 
Sbjct:   193 EIPCGNNTCIPRSWLCDDDVDCQDQSDESPERCGHNPTPPAKCSPSEMQCGSGECIHRKW 252

Query:    89 HCNGVLDCKDGSDEMHC 105
              C+G  DCKDGSDE +C
Sbjct:   253 RCDGDPDCKDGSDEKNC 269

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	2e-04
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	0.002

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           +C +G        C+G  DC DGSDE +C
Sbjct: 7   RCANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 16/29 (55%), Positives = 19/29 (65%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           QCGSGE       C+G  DC+DGSDE +C
Sbjct: 9   QCGSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.32
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.31
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.25
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.25
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	99.14
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.98
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.96
KOG1215|consensus	877		98.8
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.4
KOG1215|consensus	877		98.23
KOG2397|consensus	480		97.87
KOG2397|consensus	480		96.1
KOG3509|consensus	964		95.62

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.32  E-value=1.4e-12  Score=70.18  Aligned_cols=36  Identities=44%  Similarity=0.936  Sum_probs=33.7

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|++ .+|+|.++.||+..++|||+.||.||+||.+|
T Consensus         2 ~C~~-~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCPP-GEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSST-TEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred             cCcC-CeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence            5777 99999999999999999999999999999886

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.31  E-value=2.4e-12  Score=69.25  Aligned_cols=36  Identities=36%  Similarity=0.932  Sum_probs=32.7

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      .|.. .+|+|.   ++.||+. .|+|||+.||.|||||.+|
T Consensus         2 ~C~~-~~f~C~---~~~CI~~-~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCPP-GEFRCG---NGQCIPK-SWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSST-TEEEET---TSSEEEG-GGTTSSSCSSSSSTTTSSH
T ss_pred             cCcC-CeeEcC---CCCEECh-HHcCCCCCCCCCCcccccC
Confidence            4765 899998   7789999 9999999999999999876

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.25  E-value=4.1e-12  Score=67.47  Aligned_cols=35  Identities=29%  Similarity=0.816  Sum_probs=31.6

Q ss_pred             CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      |.+ .+|+|.   +++||+. .++|||+.||.|||||.+|
T Consensus         1 C~~-~~f~C~---~~~Ci~~-~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           1 CPP-NEFRCA---NGRCIPS-SWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CCC-CeEEcC---CCCeeCH-HHcCCCccCCCCCcccccC
Confidence            444 799998   7999999 9999999999999999876

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.25  E-value=4.3e-12  Score=67.42  Aligned_cols=35  Identities=37%  Similarity=0.775  Sum_probs=32.3

Q ss_pred             cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |++ .+|+|.+++||+..++|||+.||.|+|||.+|
T Consensus         1 C~~-~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           1 CPP-NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CCC-CeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence            345 89999999999999999999999999999887

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=99.14  E-value=5e-11  Score=83.79  Aligned_cols=67  Identities=27%  Similarity=0.394  Sum_probs=57.9

Q ss_pred             CeEEecCCCCCee-eeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCC----CeEeCCcccCCCCC---CCCCCC
Q psy1294          30 GKVMCGIYPDVQC-YDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSG----ETYTKEQHCNGVLD---CKDGSD  101 (105)
Q Consensus        30 ~~f~C~~~~~~~C-i~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g----~ci~~~~~CDg~~d---C~dgsD  101 (105)
                      +.|.|..  +..- |+. .++.|++-||+|||||.+-.  .|+. ..|+|.+.    ..|+.++|=||+-|   |-||||
T Consensus        36 ~~f~Cl~--~~~~~I~~-~~iNDdyCDC~DGSDEPGTs--AC~~-~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSD  109 (176)
T PF12999_consen   36 GKFTCLD--GSKIVIPF-SQINDDYCDCPDGSDEPGTS--ACSN-GKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSD  109 (176)
T ss_pred             CceEecC--CCCceecH-HHccCcceeCCCCCCccccc--cCcC-ceEeeccCCCCCceeehhhhcCCcCcccccCCCCC
Confidence            5799983  4444 999 99999999999999998644  4777 89999874    58999999999999   999999


Q ss_pred             C
Q psy1294         102 E  102 (105)
Q Consensus       102 E  102 (105)
                      |
T Consensus       110 E  110 (176)
T PF12999_consen  110 E  110 (176)
T ss_pred             C
Confidence            9

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.98  E-value=4.8e-10  Score=58.67  Aligned_cols=32  Identities=44%  Similarity=0.775  Sum_probs=29.6

Q ss_pred             cCCCCceecCCCCeEeCCcccCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDE  102 (105)
Q Consensus        70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE  102 (105)
                      |+. .+|+|.++.||+..++|||+.||.|++||
T Consensus         2 C~~-~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPP-GEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCC-CeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            455 68999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.96  E-value=5.7e-10  Score=58.39  Aligned_cols=32  Identities=34%  Similarity=0.834  Sum_probs=29.0

Q ss_pred             CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC
Q psy1294          26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE   62 (105)
Q Consensus        26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE   62 (105)
                      |.. .+|+|.   ++.||+. .++|||+.||.|+|||
T Consensus         2 C~~-~~f~C~---~~~Ci~~-~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPP-GEFQCD---NGRCIPL-SWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCC-CeEECC---CCCEECc-hhhCCCcCcCcCCCCC
Confidence            555 589998   7889999 9999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1215|consensus

Probab=98.80  E-value=7.5e-09  Score=86.95  Aligned_cols=72  Identities=31%  Similarity=0.680  Sum_probs=63.0

Q ss_pred             CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC--CcccCCCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE--KHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE--~~C~~~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      ..++|.  +..+||.. .++|||..+|.+++||  .++....|.. .++.|.++.|++...+|+|..+|++|+||.+|
T Consensus       221 ~~~~c~--g~~~~i~~-~~~~Dg~~dc~~~~de~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~  294 (877)
T KOG1215|consen  221 EVTRCD--GSSRCILI-SEVCDGPRDCVDGPDEGVMNCSDATCEA-PEIECADGDCSDRQKLCDGDLDCPDGLDEDYC  294 (877)
T ss_pred             eEEEec--CCCcEEee-hhccCCCcccccCCcCceeEeeccccCC-cceeecCCCCccceEEecCccCCCCccccccc
Confidence            678887  35699999 9999999999999999  4666566776 78999999999999999999999999999754

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.40  E-value=4.4e-07  Score=63.92  Aligned_cols=56  Identities=21%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             cccCCCcccCCCCCCCCCcCCCCCCCCCeEEecCCC-CCeeeeCCCCCcCCCCC---CCCCCcC
Q psy1294           3 VMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYP-DVQCYDNRTQACDSVAD---CDNMKDE   62 (105)
Q Consensus         3 ~~~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~-~~~Ci~~~~~~CDg~~D---C~dgsDE   62 (105)
                      +.+.|++=||  +|||||.|...|.. +.|+|.+.+ -.+-||. ++|=||+-|   |=|||||
T Consensus        51 ~~iNDdyCDC--~DGSDEPGTsAC~~-~~FyC~N~g~~p~~i~~-s~VnDGICDy~~CCDGSDE  110 (176)
T PF12999_consen   51 SQINDDYCDC--PDGSDEPGTSACSN-GKFYCENKGHIPRYIPS-SRVNDGICDYDICCDGSDE  110 (176)
T ss_pred             HHccCcceeC--CCCCCccccccCcC-ceEeeccCCCCCceeeh-hhhcCCcCcccccCCCCCC
Confidence            4678999999  99999888889976 799998311 1368999 999999999   9999999

>KOG1215|consensus

Probab=98.23  E-value=1.7e-06  Score=72.83  Aligned_cols=94  Identities=23%  Similarity=0.431  Sum_probs=70.1

Q ss_pred             cccCCCcccCCCCCCCCCc---CCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCc---------
Q psy1294           3 VMKCDLFNDSKSASTFATT---GVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTL---------   70 (105)
Q Consensus         3 ~~~CDg~~dC~~~d~sd~~---~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C---------   70 (105)
                      .|+..+.+..  .+..+..   ++..|.. .+|+|.. ++.+|||. .|+||+..+|.+|+||.+|....+         
T Consensus       114 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~c~~-~~~~Cip~-~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~  188 (877)
T KOG1215|consen  114 AYHPSSQPLA--PDPCAESGNGPCSHCCL-DKFSCRT-GSCKCIPG-DWLCDGEADCPDGSDELNCAVRRCEPRGASLDC  188 (877)
T ss_pred             EEecCCCCCC--CCcccccCCCCCccccC-CCCCCcC-ccccCCCC-ceeCCCCCccccchhhhcccccccCcccccccc
Confidence            4566666667  5555533   3345554 7899972 26899999 999999999999999999852111         


Q ss_pred             ------------------------------CCCCceecCCC-CeEeCCcccCCCCCCCCCCCC
Q psy1294          71 ------------------------------PVVLSLQCGSG-ETYTKEQHCNGVLDCKDGSDE  102 (105)
Q Consensus        71 ------------------------------~~~~~f~C~~g-~ci~~~~~CDg~~dC~dgsDE  102 (105)
                                                    .. ..++|..+ +||...++|||..+|.+++||
T Consensus       189 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~-~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de  250 (877)
T KOG1215|consen  189 IVAIKVCDIQHDCADDYDESEGRIYWTDDSRI-EVTRCDGSSRCILISEVCDGPRDCVDGPDE  250 (877)
T ss_pred             ceeeeecCcccccccccccccCcccccCCcce-eEEEecCCCcEEeehhccCCCcccccCCcC
Confidence                                          12 45677664 799999999999999999998

>KOG2397|consensus

Probab=97.87  E-value=1.5e-05  Score=63.37  Aligned_cols=68  Identities=25%  Similarity=0.365  Sum_probs=58.9

Q ss_pred             CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCC----CeEeCCcccCCCCCCCCCCCCC
Q psy1294          30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSG----ETYTKEQHCNGVLDCKDGSDEM  103 (105)
Q Consensus        30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g----~ci~~~~~CDg~~dC~dgsDE~  103 (105)
                      ..|.|.  +...-|+. .++-|..-||.||+||..-.  -|+. ..|+|.+.    .-|+++.|=||+-||-|||||.
T Consensus        43 ~~~~CL--dgs~~i~f-~qlNDd~CDC~DGsDEPGts--ACpn-gkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~  114 (480)
T KOG2397|consen   43 SMFKCL--DGSKTISF-SQLNDDSCDCLDGSDEPGTS--ACPN-GKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEY  114 (480)
T ss_pred             cceeec--cCCcccCH-HHhccccccCCCCCCCCccc--cCCC-CceeeeecCCCceeeechhccCcccccccCCCCc
Confidence            579998  46788998 99999999999999996543  5888 99999864    4899999999999999999995

>KOG2397|consensus

Probab=96.10  E-value=0.009  Score=47.86  Aligned_cols=56  Identities=21%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             cCCCcccCCCCCCCCCcCCCCCCCCCeEEecCC-CCCeeeeCCCCCcCCCCCCCCCCcCCc
Q psy1294           5 KCDLFNDSKSASTFATTGVEWCQSQGKVMCGIY-PDVQCYDNRTQACDSVADCDNMKDEKH   64 (105)
Q Consensus         5 ~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~-~~~~Ci~~~~~~CDg~~DC~dgsDE~~   64 (105)
                      +=|.+=||  .+|+|+-+-..|+. ++|+|.+. ....-|+. +.+=||+.||=|||||..
T Consensus        59 lNDd~CDC--~DGsDEPGtsACpn-gkF~C~N~G~~p~~i~s-srV~DGICDCCDgSDE~~  115 (480)
T KOG2397|consen   59 LNDDSCDC--LDGSDEPGTSACPN-GKFYCVNQGHQPKYIPS-SRVNDGICDCCDGSDEYL  115 (480)
T ss_pred             hccccccC--CCCCCCCccccCCC-CceeeeecCCCceeeec-hhccCcccccccCCCCcc
Confidence            33677899  99999888888997 89999631 23468999 999999999999999964

>KOG3509|consensus

Probab=95.62  E-value=0.011  Score=51.10  Aligned_cols=94  Identities=22%  Similarity=0.446  Sum_probs=73.5

Q ss_pred             cccCCCcccCCCCCCCCCcCC----CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC----CCcCCCC
Q psy1294           3 VMKCDLFNDSKSASTFATTGV----EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT----GTLPVVL   74 (105)
Q Consensus         3 ~~~CDg~~dC~~~d~sd~~~e----~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~----~~C~~~~   74 (105)
                      .+.|++..|+  .+.++....    ..+. +.+|.|.   ++++... .+.||....+..++.+.+|..    ..|.+ .
T Consensus         7 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-p~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~   78 (964)
T KOG3509|consen    7 RYACDRQPDC--RDRSDVANDPAIGSACS-PNEFKCN---NPRCVQP-EALLDADSTCGPNSTPSGCNAKPSASDCKP-T   78 (964)
T ss_pred             hhhhccchhh--HhhcccCCCccccccCC-cchhccC---CccccCc-hhhhccccccCCCCCcCCccccccccccCC-c
Confidence            4678999999  777772211    1233 3788887   8999999 999999999999998888754    34566 7


Q ss_pred             ceecCCC-CeEeCCcccCCCCCCCCCCCCCC
Q psy1294          75 SLQCGSG-ETYTKEQHCNGVLDCKDGSDEMH  104 (105)
Q Consensus        75 ~f~C~~g-~ci~~~~~CDg~~dC~dgsDE~~  104 (105)
                      .+.|.+. ++.+....|+|.++|.++++|..
T Consensus        79 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~  109 (964)
T KOG3509|consen   79 ETQCRDRLRCNPQSFQCDGTNDCKDGSDEVG  109 (964)
T ss_pred             ccccccchhcCCccccccCCCCCCccchhcc
Confidence            7788776 57788999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	8e-08
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	4e-04
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	4e-07
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-06
2xrc_A	565	Human complement factor I; immune system, hydrolas	8e-06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	6e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	7e-05
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	8e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-06
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	7e-05
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	3e-04
3a7q_B	44	Low-density lipoprotein receptor-related protein;	6e-04

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 45.0 bits (107), Expect = 8e-08
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 45  NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
           +R   CDS  DC +  DE  C   T     S QC S     +   C+   DC+DGSDE  
Sbjct: 17  SRQFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCNSSTCIPQLWACDNDPDCEDGSDEWP 75

Query: 105 C 105
            
Sbjct: 76  Q 76

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 35.3 bits (82), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           +C  G+  +++  C+   DC DGSDE  C
Sbjct: 9   RCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 43.0 bits (102), Expect = 4e-07
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 50  CDSVADCDNMKDEKHCHTG-TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           CD   DC +  DE       T   +    C +G        C+   DC D SDE  C
Sbjct: 24  CDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGC 80

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 50  CDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
                D  ++          +      QC +G+  ++ + C+G+ DC D SDE+ C
Sbjct: 185 TMGYQDFADVVCYTQKADSPMD--DFFQCVNGKYISQMKACDGINDCGDQSDELCC 238

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 41.8 bits (98), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 46  RTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           + +ACD + DC +  DE  C            C SG     +  CNG +DC  G DE+ C
Sbjct: 219 QMKACDGINDCGDQSDELCCKA---CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
            +   CD   DCDN  DE+ C   T       +C  G+  +++  C+   DC DGSDE  
Sbjct: 63  PQFWRCDGQVDCDNGSDEQGCPPKTCSQ-DEFRCHDGKCISRQFVCDSDRDCLDGSDEAS 121

Query: 105 C 105
           C
Sbjct: 122 C 122

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 45  NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
           + +  CD   DC +  DE++C   T       QC  G      + C+   DCKD SDE+ 
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRP-DEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 248

Query: 105 C 105
           C
Sbjct: 249 C 249

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 39.0 bits (90), Expect = 7e-05
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 46  RTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           R   CDS  DC +  DE  C   T     S QC S     +   C+   DC+DGSDE   
Sbjct: 103 RQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 161

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 39.0 bits (90), Expect = 8e-05
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 46  RTQACDSVADCDNMKDEKHCHTGTLPVVLSL-QCGSGETYTKEQHCNGVLDCKDGSDEMH 104
            ++ CD   DC +M DE  C   TL    +  +C SGE  T ++ CN   DC+D SDE  
Sbjct: 230 GSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPI 289

Query: 105 C 105
            
Sbjct: 290 K 290

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 50  CDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           CD   DCDN  DE+ C   T       +C  G+  +++  C+   DC DGSDE  C
Sbjct: 86  CDGQVDCDNGSDEQGCPPKTCSQ-DEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 140

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 46  RTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           R   CDS  DC +  DE  C   T     S QC S     +   C+   DC+DGSDE   
Sbjct: 121 RQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 179

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 45  NRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH 104
           + +  CD   DC +  DE++C   T       QC  G      + C+   DCKD SDE+ 
Sbjct: 208 HSSWRCDGGPDCKDKSDEENCAVATCRP-DEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 266

Query: 105 C 105
           C
Sbjct: 267 C 267

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 45  NRTQACDSVADCDNMKDEKHCHTGTLPVVLS---------LQCGSGETYTKEQHCNGVLD 95
            +  ACD+  DC++  DE       L V              C SGE       C+G  D
Sbjct: 159 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 218

Query: 96  CKDGSDEMHC 105
           CKD SDE +C
Sbjct: 219 CKDKSDEENC 228

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.0 bits (90), Expect = 7e-05
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 45  NRTQACDSVADCDNMKDEKHCHTGTLPVVLSL-QCGSGETYTKEQHCNGVLDCKDGSDEM 103
           + ++ CD   DC +M DE  C   TL    +  +C SGE  T ++ CN   DC+D SDE 
Sbjct: 247 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 306

Query: 104 HC 105
             
Sbjct: 307 IK 308

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 34.5 bits (80), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
            C SGE       C+G  DCKD SDE +C
Sbjct: 8   HCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 34.2 bits (79), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           QC +         C+   DC D SDE  C
Sbjct: 14  QCRNERCIPSVWRCDEDDDCLDHSDEDDC 42

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.92
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.86
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.86
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.84
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.7
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.68
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.62
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.33
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.32
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.31
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.31
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.3
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.3
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.3
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.29
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.28
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.27
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.26
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.26
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.26
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.25
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.25
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.23
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.23
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.22
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.21
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.21
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.21
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.17
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.16
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.14
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.14
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.13
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.12
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.07
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.05
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	99.03
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.83
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.59
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.54
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.51
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.39
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.35
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.28
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.83
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.76

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.92  E-value=3.2e-25  Score=137.78  Aligned_cols=77  Identities=27%  Similarity=0.570  Sum_probs=70.1

Q ss_pred             CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC-CcccCCCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCC
Q psy1294          24 EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE-KHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDE  102 (105)
Q Consensus        24 ~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE-~~C~~~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE  102 (105)
                      ..|.. .+|+|.   +++|||. .|+|||+.||.||||| .+|....|.+..+|+|.+|+||++.++|||+.||.|||||
T Consensus         3 ~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE   77 (82)
T 2fyj_A            3 RTCPP-NQFSCA---SGRCIPI-SWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE   77 (82)
T ss_dssp             SSSCT-TEEETT---SSCEEET-TSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSC
T ss_pred             CCCCC-CceEeC---CCCEEec-cccCCCcccCCCccccccccccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccc
Confidence            45776 899998   8899999 9999999999999999 8997777853389999999999999999999999999999


Q ss_pred             CCC
Q psy1294         103 MHC  105 (105)
Q Consensus       103 ~~C  105 (105)
                      .+|
T Consensus        78 ~~C   80 (82)
T 2fyj_A           78 AGC   80 (82)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            987

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.91  E-value=1.9e-25  Score=138.32  Aligned_cols=75  Identities=35%  Similarity=0.628  Sum_probs=68.9

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCC--
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDE--  102 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE--  102 (105)
                      .|.+ .+|+|.   +++||+. .|+|||+.||.|||||.+|....|++ .+|+|.+|+||+..++|||+.||.|||||  
T Consensus         2 ~C~~-~~F~C~---~g~CI~~-~~~CDg~~DC~DgSDE~~C~~~~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~   75 (80)
T 2fcw_B            2 TCSQ-AEFRCH---DGKCISR-QFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCNSSTCIPQLWACDNDPDCEDGSDEWP   75 (80)
T ss_dssp             CCCT-TEEECT---TSCEEEG-GGTTSSSCCSTTCTTTTTHHHHHCCT-TEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             CCCC-CccCCC---CCCEEee-ecccCCcccCCCcccccccccccCCc-eeeECCCCCEEecccccCCCcCCCCCCCcCc
Confidence            4665 899998   8999999 99999999999999999997556888 99999999999999999999999999999  


Q ss_pred             CCC
Q psy1294         103 MHC  105 (105)
Q Consensus       103 ~~C  105 (105)
                      .+|
T Consensus        76 ~~C   78 (80)
T 2fcw_B           76 QRC   78 (80)
T ss_dssp             GGC
T ss_pred             ccC
Confidence            555

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.88  E-value=3.6e-23  Score=167.48  Aligned_cols=96  Identities=31%  Similarity=0.556  Sum_probs=81.2

Q ss_pred             CcccCCCcccCCCCCCCCCcCC--CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecC
Q psy1294           2 KVMKCDLFNDSKSASTFATTGV--EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCG   79 (105)
Q Consensus         2 ~~~~CDg~~dC~~~d~sd~~~e--~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~   79 (105)
                      ..|+|||+.||  .++|||.+.  ..|.. .+|+|.   +++||+. .|+|||+.||.|||||.+|....|++ .+|+|.
T Consensus        64 ~~~~Cdg~~dC--~dgsDE~~C~~~~C~~-~~f~C~---~g~Ci~~-~~~Cdg~~dC~dgsDE~~C~~~~C~~-~~f~C~  135 (699)
T 1n7d_A           64 QFWRCDGQVDC--DNGSDEQGCPPKTCSQ-DEFRCH---DGKCISR-QFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCN  135 (699)
T ss_dssp             SSSTTSSSCCC---CCCTTTSCSSCCCCS-SCCCSS---CC----C-CCTTCSSCCSSSSCSSSSCCCCCCCS-SCCCCS
T ss_pred             cceecCCcccC--CCCcccCccccccccc-CcEEcC---CCCEecH-HHcCCCcCcCCCCCccCCcCccccCc-cccCCC
Confidence            57999999999  888884322  24655 899998   8999999 99999999999999999998778999 999999


Q ss_pred             CCCeEeCCcccCCCCCCCCCCCC--CCC
Q psy1294          80 SGETYTKEQHCNGVLDCKDGSDE--MHC  105 (105)
Q Consensus        80 ~g~ci~~~~~CDg~~dC~dgsDE--~~C  105 (105)
                      +++||+..|+|||+.||.|+|||  .+|
T Consensus       136 ~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C  163 (699)
T 1n7d_A          136 SSTCIPQLWACDNDPDCEDGSDEWPQRC  163 (699)
T ss_dssp             SSCCCCTTSTTCSSCCSSSSSSSSCSSS
T ss_pred             CCcccchhcccCCCCcCCCCcccccccC
Confidence            99999999999999999999999  665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.86  E-value=4.1e-22  Score=161.31  Aligned_cols=96  Identities=27%  Similarity=0.539  Sum_probs=85.6

Q ss_pred             CcccCCCcccCCCCCCCCC--cCC----------CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCC
Q psy1294           2 KVMKCDLFNDSKSASTFAT--TGV----------EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGT   69 (105)
Q Consensus         2 ~~~~CDg~~dC~~~d~sd~--~~e----------~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~   69 (105)
                      +.|+|||+.||  .++|||  ...          ..|.. .+|+|.   +++||+. .|+|||+.||.|||||.+|....
T Consensus       142 ~~~~Cdg~~dC--~dgsDE~~~~C~~~~~~~~~~~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~dC~dgsDE~~C~~~~  214 (699)
T 1n7d_A          142 QLWACDNDPDC--EDGSDEWPQRCRGLYVFQGDSSPCSA-FEFHCL---SGECIHS-SWRCDGGPDCKDKSDEENCAVAT  214 (699)
T ss_dssp             TTSTTCSSCCS--SSSSSSSCSSSSCCCCCSSCCCCSCS-SSCCCS---SSCCCST-TCTTSSSCCSTTSCSSCSCCCCC
T ss_pred             hhcccCCCCcC--CCCcccccccCCCcccccCCCCCCCC-cceecC---CCceEec-hhccCCCCCCCCCcccccCCCcc
Confidence            57999999999  888885  211          24654 899998   7899999 99999999999999999998778


Q ss_pred             cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |.+ .+|+|.+|.||+..++|||+.||.|++||.+|
T Consensus       215 C~~-~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~C  249 (699)
T 1n7d_A          215 CRP-DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC  249 (699)
T ss_dssp             CCS-SEEESSSSCEEETTCCSSSCCCSSSSCSSSST
T ss_pred             cCC-CcEecCCCceeeeecccCCCCCCCCCCccCCC
Confidence            998 99999999999999999999999999999876

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.86  E-value=1.1e-23  Score=173.09  Aligned_cols=98  Identities=30%  Similarity=0.540  Sum_probs=0.0

Q ss_pred             CcccCCCcccCCCCCCCCCcC----CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCcee
Q psy1294           2 KVMKCDLFNDSKSASTFATTG----VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQ   77 (105)
Q Consensus         2 ~~~~CDg~~dC~~~d~sd~~~----e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~   77 (105)
                      ..|+|||+.||  .|+|||..    ...|.+ .+|+|.. ++++|||. .|+|||+.||.|||||.+|....|.+ .+|+
T Consensus        39 ~~~~CDg~~dC--~D~sDE~~~~C~~~~C~~-~~f~C~~-~~~~Ci~~-~~~CDg~~dC~dgsDE~~C~~~~C~~-~~f~  112 (791)
T 3m0c_C           39 YKWVCDGSAEC--QDGSDESQETCLSVTCKS-GDFSCGG-RVNRCIPQ-FWRCDGQVDCDNGSDEQGCPPKTCSQ-DEFR  112 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhcCCCCccC--CCCCcccccccccCccCc-CccccCC-CCCCEeec-cccCCCCcCcCCCcccCCccCccccC-CeEE
Confidence            57999999999  88998543    235665 8999981 12899999 99999999999999999998777988 9999


Q ss_pred             cCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          78 CGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        78 C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |.+|+||+..++|||+.||.|+|||.+|
T Consensus       113 C~~g~Ci~~~~~CDg~~dC~dgsDE~~C  140 (791)
T 3m0c_C          113 CHDGKCISRQFVCDSDRDCLDGSDEASC  140 (791)
T ss_dssp             ----------------------------
T ss_pred             CCCCCEECHHHcCCCcccCCCCcccccc
Confidence            9999999999999999999999999876

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.84  E-value=1.2e-22  Score=167.00  Aligned_cols=94  Identities=31%  Similarity=0.525  Sum_probs=0.0

Q ss_pred             CcccCCCcccCCCCCCCCCcCC--CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecC
Q psy1294           2 KVMKCDLFNDSKSASTFATTGV--EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCG   79 (105)
Q Consensus         2 ~~~~CDg~~dC~~~d~sd~~~e--~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~   79 (105)
                      ..|+|||+.||  .+++||...  ..|.. .+|+|.   +++||+. .|+|||+.||.|||||.+|....|.+ .+|+|.
T Consensus        82 ~~~~CDg~~dC--~dgsDE~~C~~~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~dC~dgsDE~~C~~~~C~~-~~f~C~  153 (791)
T 3m0c_C           82 QFWRCDGQVDC--DNGSDEQGCPPKTCSQ-DEFRCH---DGKCISR-QFVCDSDRDCLDGSDEASCPVLTCGP-ASFQCN  153 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCCcCc--CCCcccCCccCccccC-CeEECC---CCCEECH-HHcCCCcccCCCCccccccccccccc-ceeccC
Confidence            57999999999  899994321  23444 899998   8999999 99999999999999999998778998 999999


Q ss_pred             CCCeEeCCcccCCCCCCCCCCCCC
Q psy1294          80 SGETYTKEQHCNGVLDCKDGSDEM  103 (105)
Q Consensus        80 ~g~ci~~~~~CDg~~dC~dgsDE~  103 (105)
                      +++||+..|+|||..||.|||||.
T Consensus       154 ~~~Ci~~~~~Cdg~~dC~dgsDE~  177 (791)
T 3m0c_C          154 SSTCIPQLWACDNDPDCEDGSDEW  177 (791)
T ss_dssp             ------------------------
T ss_pred             CCccccccccCCCCCcCCCCCCcc
Confidence            999999999999999999999996

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.70  E-value=2.7e-17  Score=101.88  Aligned_cols=59  Identities=24%  Similarity=0.496  Sum_probs=50.0

Q ss_pred             CcccCCCcccCCCCCCCCC-c--CCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294           2 KVMKCDLFNDSKSASTFAT-T--GVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus         2 ~~~~CDg~~dC~~~d~sd~-~--~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      +.|+|||+.||  .++||| .  ....|.+..+|+|.   +++||+. .|+|||+.||.|||||.+|.
T Consensus        20 ~~~~CDg~~DC--~DgsDE~~~C~~~~C~~~~~f~C~---~g~CI~~-~~~CDG~~DC~DgSDE~~C~   81 (82)
T 2fyj_A           20 ISWTCDLDDDC--GDRSDESASCAYPTCFPLTQFTCN---NGRCINI-NWRCDNDNDCGDNSDEAGCS   81 (82)
T ss_dssp             TTSSSSCSSSS--CSTTTTTSSCCCSSSCSSSEEECT---TSCEEET-TCBSSSSBCCSSSSSCSCCC
T ss_pred             ccccCCCcccC--CCccccccccccccCCCCCceECC---CCCeEcH-HHccCCCCcCCCCccccCCC
Confidence            57999999999  899995 2  12346444899998   8999999 99999999999999999984

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.68  E-value=3.7e-17  Score=130.06  Aligned_cols=89  Identities=25%  Similarity=0.418  Sum_probs=71.9

Q ss_pred             cccCCCcccCCCCCCCCCcCCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCCC
Q psy1294           3 VMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGE   82 (105)
Q Consensus         3 ~~~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g~   82 (105)
                      .+.+|+..+|  .+.++     .|....+|+|.   +++||+. .|+|||+.||.|+|||.+|..  |++ .+|+|.++.
T Consensus       187 ~h~~DagV~C--~~~~~-----~c~~~~~~~C~---~~~ci~~-~~~Cdg~~dC~d~sDE~~C~~--c~~-~~~~C~~~~  252 (565)
T 2xrc_A          187 GYQDFADVVC--YTQKA-----DSPMDDFFQCV---NGKYISQ-MKACDGINDCGDQSDELCCKA--CQG-KGFHCKSGV  252 (565)
T ss_dssp             SSCCCCEEEB--CCC--------------CBCT---TSCBCCT-TSTTSSSCCSSSSSSSSSBSS--CSS-SCEEETTTE
T ss_pred             ccccCCceec--ccccc-----CCCCcCeeECC---CCCccCH-HHcCCCcccCCCCcccccccc--cCC-CceecCCCc
Confidence            3567777777  43333     45544679998   8999999 999999999999999999974  888 899999999


Q ss_pred             eEeCCcccCCCCCCCCCCCCCCC
Q psy1294          83 TYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        83 ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      ||+..++|||..||.+++||.+|
T Consensus       253 C~~~~~~cdG~~dC~~gsDE~~C  275 (565)
T 2xrc_A          253 CIPSQYQCNGEVDCITGEDEVGC  275 (565)
T ss_dssp             EECGGGTTSSSCCSSSCTTSSSC
T ss_pred             ccCccccCCCcccCCCCccccCc
Confidence            99999999999999999999887

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.62  E-value=4e-16  Score=96.21  Aligned_cols=58  Identities=24%  Similarity=0.526  Sum_probs=48.5

Q ss_pred             CcccCCCcccCCCCCCCCCcCC--CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcC--Cccc
Q psy1294           2 KVMKCDLFNDSKSASTFATTGV--EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDE--KHCH   66 (105)
Q Consensus         2 ~~~~CDg~~dC~~~d~sd~~~e--~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE--~~C~   66 (105)
                      +.|+|||+.||  .++|||...  ..|.+ .+|+|.   +++|||. .|+|||+.||.|||||  .+|.
T Consensus        18 ~~~~CDg~~DC--~DgSDE~~C~~~~C~~-~~f~C~---~g~Ci~~-~~~CDg~~DC~dgsDE~~~~C~   79 (80)
T 2fcw_B           18 RQFVCDSDRDC--LDGSDEASCPVLTCGP-ASFQCN---SSTCIPQ-LWACDNDPDCEDGSDEWPQRCR   79 (80)
T ss_dssp             GGGTTSSSCCS--TTCTTTTTHHHHHCCT-TEEECT---TSCEEEG-GGTTSSSCCSTTCGGGCGGGC-
T ss_pred             eecccCCcccC--CCcccccccccccCCc-eeeECC---CCCEEec-ccccCCCcCCCCCCCcCcccCC
Confidence            57999999999  999994321  13555 899998   8999999 9999999999999999  6663

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.33  E-value=2.1e-13  Score=83.98  Aligned_cols=64  Identities=17%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCc---ccC-CCcCCCCceecCC--CCeEeCCcccC
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKH---CHT-GTLPVVLSLQCGS--GETYTKEQHCN   91 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~---C~~-~~C~~~~~f~C~~--g~ci~~~~~CD   91 (105)
                      ...|.+ .+|+|.  .+++|||. .|+|||+.||.|||||.+   |.. .+|.+ .+|+|.+  +.||+..+...
T Consensus         6 ~~~C~~-~~f~C~--~~g~CIp~-~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~-~~f~c~~~~~~ci~~~~~gL   75 (80)
T 2kny_A            6 GKTCGP-SSFSCP--GTHVCVPE-RWLCDGDKDCADGADESIAAGCLYNSTGSG-SGSGSTEELRVRLASHLRKL   75 (80)
T ss_dssp             SCCCSS-SEEECT--TSSCEEEH-HHHTTSSCCSSSSTTTSGGGTCSSSSTTTT-CSSCHHHHHHHHTTTTTTTT
T ss_pred             CCCCCC-CceecC--CCCeEcCh-hhcCCCCCCCCCCCccccccCCCCCcccCc-ccchhhhHHHHHHHHHHHHH
Confidence            456876 899997  36899999 999999999999999985   652 57888 8999987  56887665443

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.32  E-value=8.9e-13  Score=70.04  Aligned_cols=36  Identities=28%  Similarity=0.708  Sum_probs=32.6

Q ss_pred             CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      |.. .+|+|.   +++||+. .|+|||+.||.|||||.+|+
T Consensus         2 C~~-~~f~C~---~g~Ci~~-~~~CDg~~DC~DgsDE~~C~   37 (37)
T 1ajj_A            2 CSA-FEFHCL---SGECIHS-SWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCT-TCEECT---TSCEECG-GGTTSSSCCSTTCGGGTTCC
T ss_pred             CCC-CceEcC---CCCeech-hhccCCCCCCCCCccccCCC
Confidence            554 799998   8899999 99999999999999999883

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=70.98  Aligned_cols=39  Identities=33%  Similarity=0.761  Sum_probs=34.9

Q ss_pred             CCCCCCCCeEEecCCCC-CeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          23 VEWCQSQGKVMCGIYPD-VQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~-~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      ...|.. .+|+|.   + ++|||. .|+|||+.||.|||||.+|.
T Consensus         4 ~~~C~~-~~f~C~---~~g~CI~~-~~~CDg~~DC~DgSDE~~C~   43 (43)
T 2jm4_A            4 DVKCSL-GYFPCG---NITKCLPQ-LLHCNGVDDCGNQADEDNCG   43 (43)
T ss_dssp             SCSCCT-TEEECS---SSSCEEEG-GGTTSSCCCSSSCCTTSSCC
T ss_pred             CCCCCC-CeeECC---CCCeEcCH-hhccCCCCCCCCCcccCCCC
Confidence            456876 899998   5 899999 99999999999999999883

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.31  E-value=7.8e-13  Score=70.27  Aligned_cols=35  Identities=40%  Similarity=0.757  Sum_probs=32.9

Q ss_pred             cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |++ .+|+|.+|+||++.++|||+.||.|||||.+|
T Consensus         2 C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C   36 (37)
T 1ajj_A            2 CSA-FEFHCLSGECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CCT-TCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCC-CceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence            566 89999999999999999999999999999987

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.30  E-value=1.2e-13  Score=98.80  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=53.4

Q ss_pred             CcccCCCCCCCCCcCCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceec
Q psy1294           8 LFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQC   78 (105)
Q Consensus         8 g~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C   78 (105)
                      ++.+|  .+++||.....|.+ .+|+|.. .+++|||. .|+|||..||.|||||.+|+..+|.+ .+|+|
T Consensus        39 ~~~~c--~d~sDE~~C~~C~~-~~F~C~~-~~g~CIp~-~~~CDG~~DC~DgSDE~~C~~~~C~~-~~F~c  103 (215)
T 2gtl_O           39 KAGSL--RHRVEELEDPSCDE-HEHQCGG-DDPQCISK-LFVCDGHNDCRNGEDEKDCTLPTKAG-DKFIG  103 (215)
T ss_dssp             HHHHH--HHHHHHHSCCSSCT-TEEECCS-SSCCEEEG-GGTTSSSCCSSSCHHHHCCCCSSCTT-CEEEE
T ss_pred             ccccC--CcchhhccCCCCCC-cceeeCC-CCCcCccc-cccCCCCCcCCCcccccCCCCCCcCC-Cceee
Confidence            35678  78888665566775 8999930 18999999 99999999999999999998777877 78876

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.30  E-value=4.8e-12  Score=71.47  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=37.4

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCC
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPV   72 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~   72 (105)
                      ...|.+ .+|+|.  .+++||+. .|+|||+.||.|||||.+|.  .|.+
T Consensus         4 ~~~C~~-~~F~C~--~~g~CI~~-~~~CDG~~DC~DgSDE~~C~--~C~~   47 (50)
T 2knx_A            4 GKTCGP-SSFSCP--GTHVCVPE-RWLCDGDKDCADGADESIAA--GCLY   47 (50)
T ss_dssp             TCTTCT-TEEEET--TTTEEEET-TTTTSSSCCSTTCGGGSGGG--TCCC
T ss_pred             CCCCCC-CcEEcC--CCCeEcCh-hhcCCCCCCCCCCCcccccc--CCCC
Confidence            456876 899995  38999999 99999999999999999985  3553

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.30  E-value=2.2e-12  Score=70.30  Aligned_cols=38  Identities=32%  Similarity=0.648  Sum_probs=33.9

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      .|.. .+|+|.  .+++|||. .|+|||+.||.|||||.+|.
T Consensus         3 ~C~~-~~F~C~--~~g~CI~~-~~~CDg~~DC~DgSDE~~C~   40 (42)
T 1cr8_A            3 GCHT-DEFQCR--LDGLCIPL-RWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CSST-TCEECT--TTCCEECG-GGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCC-CceEeC--CCCeEcCh-hhcCCCCcCCCCCCcccCCC
Confidence            4765 899997  36899999 99999999999999999885

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.29  E-value=2.4e-12  Score=70.49  Aligned_cols=36  Identities=33%  Similarity=0.693  Sum_probs=33.5

Q ss_pred             CcCCCCceecCC-CCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGS-GETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~-g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|++ .+|+|.+ ++||++.++|||+.||.|||||.+|
T Consensus         6 ~C~~-~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   42 (43)
T 2jm4_A            6 KCSL-GYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC   42 (43)
T ss_dssp             SCCT-TEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred             CCCC-CeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence            5677 8999999 8999999999999999999999987

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.28  E-value=2.7e-12  Score=70.60  Aligned_cols=38  Identities=26%  Similarity=0.675  Sum_probs=33.1

Q ss_pred             CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          24 EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        24 ~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      ..|.. .+|+|.   +++||+. .|+|||+.||.|||||.+|.
T Consensus         6 ~~C~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgSDE~~C~   43 (44)
T 3a7q_B            6 KECEK-DQFQCR---NERCIPS-VWRCDEDDDCLDHSDEDDCP   43 (44)
T ss_dssp             --CCT-TEEECT---TSCEEEG-GGTTSSSCCSSSSTTTSCC-
T ss_pred             CCCCC-CceEcC---CCCEeCh-hhccCCCCCCCCCccccCCC
Confidence            45776 899998   8999999 99999999999999999884

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.27  E-value=2.7e-12  Score=70.58  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=33.2

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|.. .+|+|.+++||+..++|||+.||.|+|||.+|
T Consensus         7 ~C~~-~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C   42 (44)
T 3a7q_B            7 ECEK-DQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC   42 (44)
T ss_dssp             -CCT-TEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred             CCCC-CceEcCCCCEeChhhccCCCCCCCCCccccCC
Confidence            4677 89999999999999999999999999999987

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.26  E-value=2.5e-12  Score=71.61  Aligned_cols=42  Identities=31%  Similarity=0.679  Sum_probs=33.9

Q ss_pred             CCCCCCCCeEEecCC--CCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          23 VEWCQSQGKVMCGIY--PDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        23 e~~C~~~~~f~C~~~--~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      ...|.+ .+|+|..+  .+++|||. .|+|||+.||.|||||.+|+
T Consensus         4 ~~~C~~-~~F~C~~~~~~~g~CIp~-~~~CDG~~DC~DgSDE~~C~   47 (47)
T 1k7b_A            4 FGSCPP-GQFRCSEPPGAHGECYPQ-DWLCDGHPDCDDGRDEWGCG   47 (47)
T ss_dssp             --CCST-TEECCSSCTTSCCCCEEG-GGSSCSSCCSSSSTTTGGGC
T ss_pred             CCCCCC-CceEcCCCCCCCCcCCCc-cccCCCcCCCCCCcccCCCC
Confidence            345875 89999710  16899999 99999999999999999883

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.26  E-value=4.1e-12  Score=70.27  Aligned_cols=38  Identities=29%  Similarity=0.648  Sum_probs=34.3

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      +..|.. .+|+|.   +++||+. .|+|||+.||.|||||.+|
T Consensus         3 ~~~C~~-~~F~C~---~g~CI~~-~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            3 PPQCQP-GEFACA---NSRCIQE-RWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CCBTTB-TCEEET---TTEEECG-GGTTTSSCTTTTCSTTSTT
T ss_pred             CCcCCC-CceEcC---CCCeEeh-hhccCCCCCCCCCCCCCCC
Confidence            346865 899998   8999999 9999999999999999987

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.26  E-value=3.2e-12  Score=70.70  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=33.3

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|++ .+|+|.+|+||++.++|||+.||.|||||.+|
T Consensus         5 ~C~~-~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            5 QCQP-GEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTTB-TCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCC-CceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence            5676 89999999999999999999999999999875

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.25  E-value=2.9e-12  Score=68.80  Aligned_cols=35  Identities=34%  Similarity=0.778  Sum_probs=31.0

Q ss_pred             CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      .+|+|.. ++++|||. .|+|||+.||.|||||.+|+
T Consensus         4 ~~f~C~~-~~g~Cip~-~~~CDg~~DC~dgsDE~~C~   38 (39)
T 3dpr_E            4 HEISCGA-HSTQCIPV-SWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             TTCCCSS-SSSCCCCT-TSSSSSSCCSTTTTTSTTCC
T ss_pred             CceecCC-CCCCEeCc-cccCCCcccCcCCcccccCC
Confidence            7899981 13899999 99999999999999999885

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.25  E-value=4.8e-12  Score=68.95  Aligned_cols=36  Identities=33%  Similarity=0.588  Sum_probs=32.9

Q ss_pred             CcCCCCceecC-CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCG-SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|.+ .+|+|. +++||++.++|||+.||.|||||.+|
T Consensus         3 ~C~~-~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   39 (42)
T 1cr8_A            3 GCHT-DEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC   39 (42)
T ss_dssp             CSST-TCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred             CCCC-CceEeCCCCeEcChhhcCCCCcCCCCCCcccCC
Confidence            5677 899998 48999999999999999999999987

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.23  E-value=4e-12  Score=72.34  Aligned_cols=39  Identities=31%  Similarity=0.714  Sum_probs=35.3

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      ...|.. .+|+|.   +++||+. .|+|||+.||.|||||.++.
T Consensus         4 p~~C~~-~~F~C~---nG~CIp~-~~~CDG~~DC~DgSDE~~~~   42 (52)
T 2m0p_A            4 PASCLD-TQYTCD---NHQCISK-NWVCDTDNDCGDGSDEKNCN   42 (52)
T ss_dssp             CCSSCS-SEEECT---TCCEEET-TSTTSSSCSSSSCHHHHSCC
T ss_pred             CCCCCC-CceECC---CCCEEec-CccCCCCCCCCCCCccccch
Confidence            456876 899998   8999999 99999999999999999884

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.23  E-value=4.8e-12  Score=69.60  Aligned_cols=38  Identities=29%  Similarity=0.658  Sum_probs=34.1

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      ...|.. .+|+|.   +++|||. .|+|||+.||.|||||.+|
T Consensus         2 ~~~C~~-~~F~C~---~g~CI~~-~~~CDg~~DC~DgSDE~~~   39 (44)
T 1j8e_A            2 SHSCSS-TQFKCN---SGRCIPE-HWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             CSSSCT-TEEECT---TSCEEEG-GGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCCC-CceEeC---CCCeEec-CcccCCCCCCCCCCCCCCc
Confidence            346776 899998   8999999 9999999999999999876

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.22  E-value=4.2e-12  Score=70.71  Aligned_cols=36  Identities=39%  Similarity=0.881  Sum_probs=33.0

Q ss_pred             CcCCCCceecC-----CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCG-----SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~-----~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|++ .+|+|.     +++||+..|+|||+.||.|||||.+|
T Consensus         6 ~C~~-~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C   46 (47)
T 1k7b_A            6 SCPP-GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   46 (47)
T ss_dssp             CCST-TEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCCC-CceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence            5677 899998     78999999999999999999999886

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.21  E-value=1.9e-12  Score=72.09  Aligned_cols=41  Identities=32%  Similarity=0.709  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEecC--CCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          24 EWCQSQGKVMCGI--YPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        24 ~~C~~~~~f~C~~--~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      ..|.. .+|+|..  ..+++|||. .|+|||+.||.|||||.+|.
T Consensus         3 ~~C~~-~~F~C~~~~~~~~~CIp~-~~~CDG~~DC~DgSDE~~C~   45 (47)
T 1jrf_A            3 SRCPP-GQFRCSEPPGAHGECYPQ-DWLCDGHPDCDDGRDEWGCG   45 (47)
T ss_dssp             CCCCC-CCSCSSSCSCCCTTTSGG-GGSSSSSCCSSSSCTTHHHH
T ss_pred             CCCCC-CeeECCCCCCCCCeEcCH-hhcCCCCcCCCCCcccccCC
Confidence            45775 8999971  016899999 99999999999999999885

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.21  E-value=2.9e-12  Score=72.90  Aligned_cols=37  Identities=30%  Similarity=0.556  Sum_probs=33.8

Q ss_pred             CCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          68 GTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        68 ~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      ..|++ .+|+|.+|+||++.|+|||..||.|||||.+|
T Consensus         5 ~~C~~-~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~   41 (52)
T 2m0p_A            5 ASCLD-TQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC   41 (52)
T ss_dssp             CSSCS-SEEECTTCCEEETTSTTSSSCSSSSCHHHHSC
T ss_pred             CCCCC-CceECCCCCEEecCccCCCCCCCCCCCccccc
Confidence            35777 99999999999999999999999999999764

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.21  E-value=6.6e-12  Score=67.35  Aligned_cols=35  Identities=29%  Similarity=0.719  Sum_probs=31.8

Q ss_pred             cCCCCceecCC--CCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGS--GETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        70 C~~~~~f~C~~--g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |++ .+|+|.+  ++||+.+|+|||+.||.|+|||.+|
T Consensus         1 C~~-~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C   37 (39)
T 3dpr_E            1 CRI-HEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             CCT-TTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred             CCC-CceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence            345 8999997  7999999999999999999999987

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.17  E-value=4.6e-12  Score=70.88  Aligned_cols=36  Identities=33%  Similarity=0.798  Sum_probs=33.5

Q ss_pred             CcCCCCceecCCC-CeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSG-ETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g-~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|.+ .+|+|.++ +||++.++|||+.||.|||||.+|
T Consensus         6 ~C~~-~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C   42 (48)
T 2i1p_A            6 NCTS-AQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC   42 (48)
T ss_dssp             CCCS-SSEECSSSSCEECGGGSSSSSCCSSSSHHHHSS
T ss_pred             CCCC-CeeECCCCCEeCCHhhcCCCCCCCCCCcccccC
Confidence            5777 89999999 899999999999999999999876

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.16  E-value=7.6e-12  Score=69.96  Aligned_cols=38  Identities=34%  Similarity=0.734  Sum_probs=34.1

Q ss_pred             CCCCCCCeEEecCCCCC-eeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          24 EWCQSQGKVMCGIYPDV-QCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        24 ~~C~~~~~f~C~~~~~~-~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      ..|.+ .+|+|.   ++ +||+. .|+|||+.||.|||||.+|.
T Consensus         5 ~~C~~-~~F~C~---~g~~CI~~-~~~CDG~~DC~DgSDE~~C~   43 (48)
T 2i1p_A            5 LNCTS-AQFKCA---DGSSCINS-RYRCDGVYDCRDNSDEAGCP   43 (48)
T ss_dssp             CCCCS-SSEECS---SSSCEECG-GGSSSSSCCSSSSHHHHSSC
T ss_pred             CCCCC-CeeECC---CCCEeCCH-hhcCCCCCCCCCCcccccCC
Confidence            45775 899998   66 89999 99999999999999999996

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.14  E-value=8.6e-12  Score=68.56  Aligned_cols=35  Identities=34%  Similarity=0.634  Sum_probs=32.6

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH  104 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~  104 (105)
                      .|++ .+|+|.+++||+..++|||+.||.|+|||.+
T Consensus         4 ~C~~-~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            4 SCSS-TQFKCNSGRCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSCT-TEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCCC-CceEeCCCCeEecCcccCCCCCCCCCCCCCC
Confidence            5777 8999999999999999999999999999975

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.14  E-value=1.6e-11  Score=69.27  Aligned_cols=36  Identities=31%  Similarity=0.484  Sum_probs=32.4

Q ss_pred             CcCCCCceecC-CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCG-SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|.+ .+|+|. +++||++.|+|||+.||.|||||.+|
T Consensus         6 ~C~~-~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C   42 (50)
T 2knx_A            6 TCGP-SSFSCPGTHVCVPERWLCDGDKDCADGADESIA   42 (50)
T ss_dssp             TTCT-TEEEETTTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred             CCCC-CcEEcCCCCeEcChhhcCCCCCCCCCCCccccc
Confidence            4667 899995 88999999999999999999999864

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.13  E-value=1.1e-12  Score=93.73  Aligned_cols=51  Identities=24%  Similarity=0.421  Sum_probs=46.2

Q ss_pred             CCCCCCCCCcCCcccCCCcCCCCceec--CCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          52 SVADCDNMKDEKHCHTGTLPVVLSLQC--GSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        52 g~~DC~dgsDE~~C~~~~C~~~~~f~C--~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      ...+|.+++||.+|.  .|++ .+|+|  .+|+|||..|+|||..||.|||||.+|
T Consensus        39 ~~~~c~d~sDE~~C~--~C~~-~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C   91 (215)
T 2gtl_O           39 KAGSLRHRVEELEDP--SCDE-HEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC   91 (215)
T ss_dssp             HHHHHHHHHHHHSCC--SSCT-TEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred             ccccCCcchhhccCC--CCCC-cceeeCCCCCcCccccccCCCCCcCCCcccccCC
Confidence            345899999999995  5998 99999  789999999999999999999999876

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.12  E-value=6.4e-12  Score=69.90  Aligned_cols=36  Identities=39%  Similarity=0.865  Sum_probs=32.5

Q ss_pred             CcCCCCceecC-----CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCG-----SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~-----~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|++ .+|+|.     +++||+..|+|||+.||.|||||.+|
T Consensus         4 ~C~~-~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C   44 (47)
T 1jrf_A            4 RCPP-GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   44 (47)
T ss_dssp             CCCC-CCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred             CCCC-CeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence            5777 899998     67899999999999999999999765

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.07  E-value=5.5e-11  Score=73.09  Aligned_cols=40  Identities=28%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             cccCCCcCCCCceecC-CCCeEeCCcccCCCCCCCCCCCCCC
Q psy1294          64 HCHTGTLPVVLSLQCG-SGETYTKEQHCNGVLDCKDGSDEMH  104 (105)
Q Consensus        64 ~C~~~~C~~~~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~  104 (105)
                      +|+...|++ .+|+|. +++|||..|+|||+.||.|||||.+
T Consensus         3 ~C~~~~C~~-~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~   43 (80)
T 2kny_A            3 KLEGKTCGP-SSFSCPGTHVCVPERWLCDGDKDCADGADESI   43 (80)
T ss_dssp             SCSSCCCSS-SEEECTTSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred             CCCCCCCCC-CceecCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence            465567888 999998 6799999999999999999999973

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.05  E-value=2e-10  Score=91.33  Aligned_cols=59  Identities=24%  Similarity=0.447  Sum_probs=51.1

Q ss_pred             CcccCCCcccCCCCCCCCCcCCCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC
Q psy1294           2 KVMKCDLFNDSKSASTFATTGVEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT   67 (105)
Q Consensus         2 ~~~~CDg~~dC~~~d~sd~~~e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~   67 (105)
                      +.|+|||+.||  .|+|||.....|.+ .+|+|.   ++.||+. .++|||..||.+|+||.+|..
T Consensus       219 ~~~~Cdg~~dC--~d~sDE~~C~~c~~-~~~~C~---~~~C~~~-~~~cdG~~dC~~gsDE~~C~~  277 (565)
T 2xrc_A          219 QMKACDGINDC--GDQSDELCCKACQG-KGFHCK---SGVCIPS-QYQCNGEVDCITGEDEVGCAG  277 (565)
T ss_dssp             TTSTTSSSCCS--SSSSSSSSBSSCSS-SCEEET---TTEEECG-GGTTSSSCCSSSCTTSSSCC-
T ss_pred             HHHcCCCcccC--CCCcccccccccCC-CceecC---CCcccCc-cccCCCcccCCCCccccCcCC
Confidence            57999999999  99999655545665 799998   8889999 999999999999999999853

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.03  E-value=2e-10  Score=82.12  Aligned_cols=60  Identities=22%  Similarity=0.439  Sum_probs=47.7

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCC--cccCC-CcCCCCce--ecCCCCeEeC
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEK--HCHTG-TLPVVLSL--QCGSGETYTK   86 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~--~C~~~-~C~~~~~f--~C~~g~ci~~   86 (105)
                      +..|.. .+|+|.. .+++|||. .|+|||..||.|||||.  +|... +|.+ .+|  +|.++.|+..
T Consensus        50 ~~~C~~-~eFqC~~-~~g~CIp~-~wvCDG~~DC~DGSDE~~~~C~~~~tc~~-~qF~g~~~~d~C~kr  114 (220)
T 2gtl_N           50 GTHCEK-RTFQCGG-NEQECISD-LLVCDGHKDCHNAHDEDPDVCDTSVVKAG-NVFSGTSTWHGCLAR  114 (220)
T ss_dssp             CCSSCT-TEEECCS-SSCCEEET-TTTTSSSCCSTTCTTSCGGGGCGGGGCTT-CEEEEEEEECSSCCC
T ss_pred             CCCCCC-CccCcCC-CCCcEeCc-ceecCCCCCCCCCCccCcccCCCCCccCC-cceeeEecCChhhcC
Confidence            567987 8999951 26899999 99999999999999996  89776 6766 565  4666666654

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.83  E-value=2.6e-09  Score=76.46  Aligned_cols=42  Identities=24%  Similarity=0.540  Sum_probs=36.1

Q ss_pred             CCCCCCCCCeEEecCCC-CCeeeeCCCCCcCCCCCCCCCCcCC--cccC
Q psy1294          22 GVEWCQSQGKVMCGIYP-DVQCYDNRTQACDSVADCDNMKDEK--HCHT   67 (105)
Q Consensus        22 ~e~~C~~~~~f~C~~~~-~~~Ci~~~~~~CDg~~DC~dgsDE~--~C~~   67 (105)
                      ....|.+ .+|+|.  + +++|||. .|+|||..||.|||||.  +|..
T Consensus        50 ~~~~C~~-~~F~C~--~~~g~CI~~-~~~CDG~~DC~DgSDE~~~~C~~   94 (217)
T 2gtl_M           50 EEHHCDE-HESECR--GDVPECIHD-LLFCDGEKDCRDGSDEDPETCSL   94 (217)
T ss_dssp             SCCCCCT-TEEECS--SSSCCEEEG-GGTTSSSCCSSSSTTTSHHHHCC
T ss_pred             CCCCCCC-CceecC--CCCCcEech-hhccCCCCCCCCCCccccCcCCC
Confidence            3557886 899996  2 5899999 99999999999999998  7864

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.59  E-value=1.6e-08  Score=72.34  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=31.7

Q ss_pred             CCcCCCCceecCC--CCeEeCCcccCCCCCCCCCCCCC
Q psy1294          68 GTLPVVLSLQCGS--GETYTKEQHCNGVLDCKDGSDEM  103 (105)
Q Consensus        68 ~~C~~~~~f~C~~--g~ci~~~~~CDg~~dC~dgsDE~  103 (105)
                      ..|++ .+|+|.+  |+||+..|+|||..||.|||||.
T Consensus        52 ~~C~~-~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~   88 (217)
T 2gtl_M           52 HHCDE-HESECRGDVPECIHDLLFCDGEKDCRDGSDED   88 (217)
T ss_dssp             CCCCT-TEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCC-CceecCCCCCcEechhhccCCCCCCCCCCccc
Confidence            35777 8999965  89999999999999999999996

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.54  E-value=5e-08  Score=69.71  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=31.1

Q ss_pred             CCcCCCCceecC--CCCeEeCCcccCCCCCCCCCCCCC
Q psy1294          68 GTLPVVLSLQCG--SGETYTKEQHCNGVLDCKDGSDEM  103 (105)
Q Consensus        68 ~~C~~~~~f~C~--~g~ci~~~~~CDg~~dC~dgsDE~  103 (105)
                      ..|++ .+|+|.  +|+||+..|+|||..||.|||||.
T Consensus        51 ~~C~~-~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~   87 (220)
T 2gtl_N           51 THCEK-RTFQCGGNEQECISDLLVCDGHKDCHNAHDED   87 (220)
T ss_dssp             CSSCT-TEEECCSSSCCEEETTTTTSSSCCSTTCTTSC
T ss_pred             CCCCC-CccCcCCCCCcEeCcceecCCCCCCCCCCccC
Confidence            35677 899995  579999999999999999999996

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.51  E-value=1e-07  Score=75.66  Aligned_cols=47  Identities=19%  Similarity=0.521  Sum_probs=38.3

Q ss_pred             CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccCCCcCCCCceecCCCCeEe
Q psy1294          30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHTGTLPVVLSLQCGSGETYT   85 (105)
Q Consensus        30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~~f~C~~g~ci~   85 (105)
                      .+|+|.  .+|+||+. .|+|||..||.|+|||.+|..      ..+.|....+++
T Consensus        69 ~~f~C~--~~g~Ci~~-~~~Cdg~~dC~d~sdE~~c~~------~~~~C~~~~~~~  115 (537)
T 3ojy_B           69 EGFVCA--QTGRCVNR-RLLCNGDNDCGDQSDEANCRR------IYKKCQHEMDQY  115 (537)
T ss_dssp             SSEECT--TTCCEECG-GGTTSSSCCSSSSCTTSSCSS------CSSCCSSCCBCC
T ss_pred             CccCcC--CCCcEeec-cccCCCCCCCCCccccccCCC------CCCccccCcCCC
Confidence            589996  37999999 999999999999999999863      345666555555

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.39  E-value=2.5e-07  Score=73.47  Aligned_cols=62  Identities=26%  Similarity=0.503  Sum_probs=43.6

Q ss_pred             eeeCCCCCcCCCCCCC-CCCcCCcccC-CCcCCC---CceecC-CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          42 CYDNRTQACDSVADCD-NMKDEKHCHT-GTLPVV---LSLQCG-SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        42 Ci~~~~~~CDg~~DC~-dgsDE~~C~~-~~C~~~---~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|.. .....| ..|. ...|+..|.. ..|+.+   .+|+|. +|+||+..|+|||..||.|+|||.+|
T Consensus        34 ~v~~-p~q~gG-~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c  101 (537)
T 3ojy_B           34 YLLQ-PSQFHG-EPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC  101 (537)
T ss_dssp             CEEE-CEETTC-CCCCSCSEEEEECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSSSSCTTSSC
T ss_pred             eecc-ccccCC-CcCccchhhhccCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCCCccccccC
Confidence            4444 334333 4455 3466666743 334221   479999 89999999999999999999999987

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.35  E-value=5.8e-07  Score=71.70  Aligned_cols=72  Identities=29%  Similarity=0.479  Sum_probs=49.4

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCC-CcCCcccC-CCcCCC----CceecC-CCCeEeCCcccCCCCCCC
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNM-KDEKHCHT-GTLPVV----LSLQCG-SGETYTKEQHCNGVLDCK   97 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dg-sDE~~C~~-~~C~~~----~~f~C~-~g~ci~~~~~CDg~~dC~   97 (105)
                      .|.. .+++-.      .|.. .....| ..|... .|+..|.. ..|+.+    .+|+|. +|+||+..++|||..||.
T Consensus        22 ~C~~-~~~R~R------~v~~-p~q~gG-~~C~~~l~d~~~C~~~~~c~~~~~c~~~f~C~~~g~Ci~~~~~Cdg~~dC~   92 (554)
T 3ojy_A           22 PCQD-KKYRHR------SLLQ-PNKFGG-TICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCL   92 (554)
T ss_dssp             TTTC-EEEEEC------CEEE-CBCSSC-CCCCSCSEEEEECCCCCCC--CCCCSSSEECSSSCCEECGGGTTSSSCCSS
T ss_pred             CCCC-ccEeeE------eecc-ccccCC-CCCCCccccccCCCCCCCCcccCCCCCcCccCCCCEEcccccccCCcccCC
Confidence            4553 455543      4554 445444 447654 56666743 233321    589999 899999999999999999


Q ss_pred             CCCCCCCC
Q psy1294          98 DGSDEMHC  105 (105)
Q Consensus        98 dgsDE~~C  105 (105)
                      |+|||.+|
T Consensus        93 d~sDE~~C  100 (554)
T 3ojy_A           93 DGSDEDDC  100 (554)
T ss_dssp             SCTTSSSC
T ss_pred             CccccccC
Confidence            99999887

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.28  E-value=7.8e-07  Score=70.95  Aligned_cols=35  Identities=23%  Similarity=0.575  Sum_probs=32.0

Q ss_pred             CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC
Q psy1294          30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT   67 (105)
Q Consensus        30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~   67 (105)
                      .+|+|.  .+++||+. .|+|||..||.|+|||.+|..
T Consensus        68 ~~f~C~--~~g~Ci~~-~~~Cdg~~dC~d~sDE~~C~~  102 (554)
T 3ojy_A           68 QDFQCK--ETGRCLKR-HLVCNGDQDCLDGSDEDDCED  102 (554)
T ss_dssp             SSEECS--SSCCEECG-GGTTSSSCCSSSCTTSSSCCS
T ss_pred             CcCccC--CCCEEccc-ccccCCcccCCCccccccCCC
Confidence            689996  37999999 999999999999999999964

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.83  E-value=1.2e-05  Score=67.27  Aligned_cols=32  Identities=41%  Similarity=0.848  Sum_probs=30.3

Q ss_pred             CceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          74 LSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        74 ~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      ..|+|.+|+||+..++|||..||.|+|||.+|
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C  152 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDERDC  152 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTC
T ss_pred             cccccCCCceEccceecCCcccCCCccccccC
Confidence            46999999999999999999999999999887

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.76  E-value=2.2e-05  Score=65.62  Aligned_cols=34  Identities=26%  Similarity=0.698  Sum_probs=31.7

Q ss_pred             CeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcccC
Q psy1294          30 GKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCHT   67 (105)
Q Consensus        30 ~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~~   67 (105)
                      ..|+|.   +|+||+. .|+|||..||.|+|||.+|..
T Consensus       121 ~~F~C~---~g~ci~~-~~~c~g~~dC~d~sde~~C~~  154 (913)
T 3t5o_A          121 NKFRCD---SGRCIAR-KLECNGENDCGDNSDERDCGR  154 (913)
T ss_dssp             SEEECT---TSCEEEG-GGSSSSSCCSSSSGGGTTCSS
T ss_pred             cccccC---CCceEcc-ceecCCcccCCCccccccCCC
Confidence            579998   8999999 999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	1e-04
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-04
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-04
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-04
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	7e-04
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	0.002
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	0.002

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           +C  G+  +++  C+   DC DGSDE  C
Sbjct: 9   RCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           QC  G      + C+   DCKD SDE+ C
Sbjct: 9   QCSDGNCIHGSRQCDREYDCKDMSDEVGC 37

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 2e-04
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
            C SGE       C+G  DCKD SDE +C
Sbjct: 8   HCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 4e-04
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           +C SG    +   C+G  DC D SDE H 
Sbjct: 11  KCNSGRCIPEHWTCDGDNDCGDYSDETHA 39

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 6e-04
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
            C +     +   C+G  DC D SDE   
Sbjct: 12  ACANSRCIQERWKCDGDNDCLDNSDEAPA 40

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 7e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           QC  G+  + +  C+G  +C+DGSDE   
Sbjct: 14  QCQDGKCISYKWVCDGSAECQDGSDESQE 42

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (72), Expect = 0.002
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           +C SGE  T ++ CN   DC+D SDE   
Sbjct: 13  KCHSGECITLDKVCNMARDCRDWSDEPIK 41

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (71), Expect = 0.002
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 77  QCGSGETYTKEQHCNGVLDCKDGSDEMHC 105
           QC S     +   C+   DC+DGSDE   
Sbjct: 9   QCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.41
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.37
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.37
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.37
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.36
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.36
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.35
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.35
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.34
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.32
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.31
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.3
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.29
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.29
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.27
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.27
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.23
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.23
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.22
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.21
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.21
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.21
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.21
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.21
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.2
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.18
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.18
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.12
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.05
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.05

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.8e-14  Score=74.04  Aligned_cols=37  Identities=32%  Similarity=0.672  Sum_probs=34.1

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      .|.+ .+|+|.   +++||+. .|+|||+.||.|||||.+|+
T Consensus         2 tC~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgsDE~~Cp   38 (39)
T d2fcwb1           2 TCSQ-AEFRCH---DGKCISR-QFVCDSDRDCLDGSDEASCP   38 (39)
T ss_dssp             CCCT-TEEECT---TSCEEEG-GGTTSSSCCSTTCTTTTTHH
T ss_pred             cCCC-CCEEcC---CCCEEcc-hhcCcCcCcCcCCchhcCCC
Confidence            5776 899998   8999999 99999999999999999985

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-13  Score=73.10  Aligned_cols=39  Identities=38%  Similarity=0.739  Sum_probs=33.6

Q ss_pred             CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          24 EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        24 ~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      ..|.+ .+|+|.. ++++|||. .|+|||+.||.|||||.+|
T Consensus         3 ~~C~~-~~f~C~~-~~~~CI~~-~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           3 VTCKS-GDFSCGG-RVNRCIPQ-FWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TTCCS-SCEECCS-SCCCEECG-GGTTCSCCCSSSCTTTTTC
T ss_pred             cccCC-CceECCC-CCCCCccc-hhcCCCcCcCcCcccccCC
Confidence            35776 8999962 35789999 9999999999999999987

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-13  Score=71.91  Aligned_cols=37  Identities=32%  Similarity=0.798  Sum_probs=34.0

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      +|.+ .+|+|.   +++||+. .|+|||+.||.|+|||.+|.
T Consensus         2 sC~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1f8za_           2 TCRP-DEFQCS---DGNCIHG-SRQCDREYDCKDMSDEVGCV   38 (39)
T ss_dssp             CCCT-TEEECS---SSCEEET-TTSSSCCCCSTTSGGGSSSC
T ss_pred             CCCC-CceEeC---CCCeECh-hhcCCCCCcCCCCchhccCc
Confidence            5765 899998   8999999 99999999999999999984

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-13  Score=72.75  Aligned_cols=36  Identities=36%  Similarity=0.676  Sum_probs=34.1

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      +|++ .+|+|.+|+||+..++|||+.||.|+|||.+|
T Consensus         2 sC~~-~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1f8za_           2 TCRP-DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC   37 (39)
T ss_dssp             CCCT-TEEECSSSCEEETTTSSSCCCCSTTSGGGSSS
T ss_pred             CCCC-CceEeCCCCeEChhhcCCCCCcCCCCchhccC
Confidence            5777 99999999999999999999999999999987

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=71.83  Aligned_cols=36  Identities=28%  Similarity=0.708  Sum_probs=32.8

Q ss_pred             CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      |.+ .+|+|.   +++||+. .|+|||+.||.|||||.+|.
T Consensus         2 C~~-~~f~C~---~g~Ci~~-~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           2 CSA-FEFHCL---SGECIHS-SWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCT-TCEECT---TSCEECG-GGTTSSSCCSTTCGGGTTCC
T ss_pred             CCC-CceEcC---CCCEECc-hhcCCCCCcCCCCchhhccC
Confidence            555 899998   8899999 99999999999999999883

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=72.58  Aligned_cols=36  Identities=33%  Similarity=0.708  Sum_probs=33.8

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      +|++ .+|+|.+|+||++.++|||+.||.|||||.+|
T Consensus         2 tC~~-~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d2fcwb1           2 TCSQ-AEFRCHDGKCISRQFVCDSDRDCLDGSDEASC   37 (39)
T ss_dssp             CCCT-TEEECTTSCEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred             cCCC-CCEEcCCCCEEcchhcCcCcCcCcCCchhcCC
Confidence            5777 89999999999999999999999999999986

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-13  Score=71.88  Aligned_cols=35  Identities=40%  Similarity=0.757  Sum_probs=33.2

Q ss_pred             cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |++ .+|+|.+|+||+..++|||+.||.|||||.+|
T Consensus         2 C~~-~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C   36 (37)
T d1ajja_           2 CSA-FEFHCLSGECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CCT-TCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCC-CceEcCCCCEECchhcCCCCCcCCCCchhhcc
Confidence            666 89999999999999999999999999999987

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-13  Score=72.43  Aligned_cols=39  Identities=31%  Similarity=0.624  Sum_probs=35.0

Q ss_pred             CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          24 EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        24 ~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      ..|.+ ++|+|.  .+++||+. .|+|||+.||.|+|||.+|.
T Consensus         2 ~~C~~-~~f~C~--~~~~CI~~-~~~CDg~~DC~DgsDE~~C~   40 (42)
T d1cr8a_           2 GGCHT-DEFQCR--LDGLCIPL-RWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSST-TCEECT--TTCCEECG-GGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCC-CceEcC--CCCEEccc-hhcCCCcCcCCCcchhccCC
Confidence            35776 899997  47899999 99999999999999999995

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.34  E-value=1.5e-13  Score=73.48  Aligned_cols=39  Identities=38%  Similarity=0.750  Sum_probs=34.1

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      +|.+ .+|+|.. ++++|||. .|+|||+.||.|+|||.+|.
T Consensus         2 ~C~~-~~f~C~~-~~~~CI~~-~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCDE-HEHQCGG-DDPQCISK-LFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSCT-TEEECCS-SSCCEEEG-GGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCc-CeeECCC-CCCcEeec-hhccCCCCcCCCCchhccCc
Confidence            5776 8999962 35789999 99999999999999999985

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.5e-13  Score=71.81  Aligned_cols=38  Identities=34%  Similarity=0.815  Sum_probs=32.1

Q ss_pred             CCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          26 CQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        26 C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      |.+ .+|+|.. ++.+|||. .|+|||+.||.|||||.+|+
T Consensus         1 C~~-~~f~C~~-g~~~CI~~-~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1v9u5_           1 CRI-HEISCGA-HSTQCIPV-SWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCT-TSCCCSS-SSSCCCCG-GGSSSSSCCSTTSGGGSSCC
T ss_pred             CCC-CceECCC-CCCCeeec-hhcCcCcccCCCCchhccCC
Confidence            444 8999972 23579999 99999999999999999985

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.7e-13  Score=70.81  Aligned_cols=36  Identities=33%  Similarity=0.701  Sum_probs=32.7

Q ss_pred             CcCCCCceecC--CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCG--SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~--~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      +|++ .+|+|.  +++||+..++|||+.||.|||||.+|
T Consensus         4 ~C~~-~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           4 TCKS-GDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TCCS-SCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             ccCC-CceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            5777 999996  45799999999999999999999987

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.5e-13  Score=72.19  Aligned_cols=38  Identities=29%  Similarity=0.658  Sum_probs=34.8

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      ...|.+ ++|+|.   +++|||. .|+|||+.||.|+|||.+|
T Consensus         2 ~~~C~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           2 SHSCSS-TQFKCN---SGRCIPE-HWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             CSSSCT-TEEECT---TSCEEEG-GGTTSSSCCSSSSGGGSHH
T ss_pred             CccCCC-CcEEcC---CCCEECh-hhcCcCcccCCCCCcCCCC
Confidence            457876 899998   8999999 9999999999999999987

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.9e-13  Score=71.77  Aligned_cols=37  Identities=30%  Similarity=0.574  Sum_probs=34.1

Q ss_pred             CCcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          68 GTLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        68 ~~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      ..|++ ++|+|.+++||+.+++|||+.||.|||||.+|
T Consensus         6 ~~C~~-~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   42 (44)
T d1f5ya1           6 DRCER-NEFQCQDGKCISYKWVCDGSAECQDGSDESQE   42 (44)
T ss_dssp             CCCCS-SSEECSSSCEECTTTTTSSSCSSSSSGGGTTS
T ss_pred             CccCC-CCeEcCCCCeEChhHcCCCcCcCCCCCcCCCC
Confidence            35777 99999999999999999999999999999875

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-12  Score=70.72  Aligned_cols=38  Identities=26%  Similarity=0.622  Sum_probs=34.4

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      ...|.. .+|+|.   +++|||. .|+|||+.||.|||||.+|
T Consensus         5 ~~~C~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgsDE~~c   42 (44)
T d1f5ya1           5 GDRCER-NEFQCQ---DGKCISY-KWVCDGSAECQDGSDESQE   42 (44)
T ss_dssp             CCCCCS-SSEECS---SSCEECT-TTTTSSSCSSSSSGGGTTS
T ss_pred             CCccCC-CCeEcC---CCCeECh-hHcCCCcCcCCCCCcCCCC
Confidence            346876 899998   8899999 9999999999999999987

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-12  Score=69.82  Aligned_cols=36  Identities=33%  Similarity=0.588  Sum_probs=33.1

Q ss_pred             CcCCCCceecC-CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCG-SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~-~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      +|++ .+|+|. +++||+..++|||+.||.|+|||.+|
T Consensus         3 ~C~~-~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C   39 (42)
T d1cr8a_           3 GCHT-DEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC   39 (42)
T ss_dssp             CSST-TCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred             CCCC-CceEcCCCCEEccchhcCCCcCcCCCcchhccC
Confidence            5777 999995 56899999999999999999999987

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.27  E-value=3.4e-13  Score=71.98  Aligned_cols=37  Identities=32%  Similarity=0.646  Sum_probs=33.4

Q ss_pred             CCcCCCCceecC--CCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          68 GTLPVVLSLQCG--SGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        68 ~~C~~~~~f~C~--~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      ++|.+ .+|+|.  +++||+..|+|||+.||.|+|||.+|
T Consensus         1 P~C~~-~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C   39 (41)
T d2gtlo2           1 PSCDE-HEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC   39 (41)
T ss_dssp             CSSCT-TEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred             CCCCc-CeeECCCCCCcEeechhccCCCCcCCCCchhccC
Confidence            46788 999996  46899999999999999999999887

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.23  E-value=1.8e-12  Score=69.44  Aligned_cols=40  Identities=33%  Similarity=0.718  Sum_probs=32.8

Q ss_pred             CCCCCCeEEecCC--CCCeeeeCCCCCcCCCCCCCCCCcCCccc
Q psy1294          25 WCQSQGKVMCGIY--PDVQCYDNRTQACDSVADCDNMKDEKHCH   66 (105)
Q Consensus        25 ~C~~~~~f~C~~~--~~~~Ci~~~~~~CDg~~DC~dgsDE~~C~   66 (105)
                      +|.+ .+|+|...  .+++|||. .|+|||+.||.|||||.+|+
T Consensus         1 tC~~-~~f~C~~~~~~~~~CIp~-~~~CDg~~DC~DgsDE~~CG   42 (42)
T d1k7ba_           1 SCPP-GQFRCSEPPGAHGECYPQ-DWLCDGHPDCDDGRDEWGCG   42 (42)
T ss_dssp             CCST-TEECCSSCTTSCCCCEEG-GGSSCSSCCSSSSTTTGGGC
T ss_pred             CCCc-CcEEcCCCCCCCCcEech-hhcCCCcCcCcCChhhhccC
Confidence            3665 89999631  23579999 99999999999999999984

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.5e-12  Score=67.87  Aligned_cols=36  Identities=28%  Similarity=0.567  Sum_probs=32.5

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      +|.+ ++|+|.   +++|||. .|+|||+.||.|||||..+
T Consensus         2 tC~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgsDE~~~   37 (39)
T d2fcwb2           2 TCGP-ASFQCN---SSTCIPQ-LWACDNDPDCEDGSDEWPQ   37 (39)
T ss_dssp             HCCT-TEEECT---TSCEEEG-GGTTSSSCCSTTCGGGCGG
T ss_pred             ccCC-CceEcC---CCCeECh-hhcCCCCCCCCCCCcCCCC
Confidence            3665 899998   8999999 9999999999999999764

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.22  E-value=6.2e-12  Score=66.96  Aligned_cols=38  Identities=29%  Similarity=0.667  Sum_probs=32.2

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      +|.+ ++|+|.. .+++|||. .|+|||+.||.|||||..+
T Consensus         1 ~C~~-~~f~C~~-~~g~Ci~~-~~~CDg~~DC~DgsDE~~~   38 (41)
T d2gtln2           1 HCEK-RTFQCGG-NEQECISD-LLVCDGHKDCHNAHDEDPD   38 (41)
T ss_dssp             SSCT-TEEECCS-SSCCEEET-TTTTSSSCCSTTCTTSCGG
T ss_pred             CCCC-CeeECCC-cCCCeech-HHcCCCCccCCCCCccccc
Confidence            3665 8999962 25799999 9999999999999999764

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8e-12  Score=67.46  Aligned_cols=37  Identities=24%  Similarity=0.611  Sum_probs=33.0

Q ss_pred             CCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCc
Q psy1294          24 EWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKH   64 (105)
Q Consensus        24 ~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~   64 (105)
                      ..|..+.+|+|.   +++|||. .|+|||+.||.|+|||..
T Consensus         4 ~~C~~~~~f~C~---~g~CI~~-~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           4 TLCEGPNKFKCH---SGECITL-DKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             SSCCSTTEEECT---TSCEEES-TTTTCSSCCCSSCSSSCT
T ss_pred             CcCCCCCeEECC---CCCeEch-hhcCCCCCCCCCCCccCc
Confidence            347666999998   8899999 999999999999999963

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-12  Score=70.65  Aligned_cols=36  Identities=33%  Similarity=0.621  Sum_probs=33.3

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|++ .+|+|.+++||+..++|||+.||.|+|||.+|
T Consensus         4 ~C~~-~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           4 SCSS-TQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSCT-TEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             cCCC-CcEEcCCCCEEChhhcCcCcccCCCCCcCCCC
Confidence            5777 99999999999999999999999999999754

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.4e-12  Score=68.47  Aligned_cols=38  Identities=29%  Similarity=0.648  Sum_probs=34.1

Q ss_pred             CCCCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCcc
Q psy1294          23 VEWCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKHC   65 (105)
Q Consensus        23 e~~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~C   65 (105)
                      ...|.. .+|+|.   +++||+. .|+|||+.||.|||||..+
T Consensus         3 p~~C~~-~~f~C~---~g~CI~~-~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           3 PPQCQP-GEFACA---NSRCIQE-RWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CCBTTB-TCEEET---TTEEECG-GGTTTSSCTTTTCSTTSTT
T ss_pred             CCcCCC-CCeEcC---CCCeECh-hhhCcCcCcCCCCCCCCcC
Confidence            345876 899998   8999999 9999999999999999876

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.7e-12  Score=69.13  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=33.2

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      .|++ ++|+|.+++||+..++|||+.||.|||||..+
T Consensus         5 ~C~~-~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           5 QCQP-GEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTTB-TCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCC-CCeEcCCCCeEChhhhCcCcCcCCCCCCCCcC
Confidence            5777 99999999999999999999999999999753

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.6e-12  Score=68.59  Aligned_cols=35  Identities=37%  Similarity=0.551  Sum_probs=32.4

Q ss_pred             CcCCCCceecCCCCeEeCCcccCCCCCCCCCCCCCC
Q psy1294          69 TLPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEMH  104 (105)
Q Consensus        69 ~C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~~  104 (105)
                      +|++ ++|+|.+|.||+..++|||+.||.|||||..
T Consensus         2 tC~~-~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCGP-ASFQCNSSTCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCCT-TEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccCC-CceEcCCCCeEChhhcCCCCCCCCCCCcCCC
Confidence            4677 8999999999999999999999999999964

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-12  Score=68.41  Aligned_cols=35  Identities=29%  Similarity=0.716  Sum_probs=31.3

Q ss_pred             cCCCCceecCCC--CeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGSG--ETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        70 C~~~~~f~C~~g--~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |++ .+|+|.++  +||+..++|||+.||.|+|||.+|
T Consensus         1 C~~-~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1v9u5_           1 CRI-HEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             CCT-TSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSC
T ss_pred             CCC-CceECCCCCCCeeechhcCcCcccCCCCchhccC
Confidence            455 89999875  599999999999999999999987

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.18  E-value=3.8e-12  Score=68.13  Aligned_cols=35  Identities=40%  Similarity=0.896  Sum_probs=30.9

Q ss_pred             cCCCCceecCC-----CCeEeCCcccCCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGS-----GETYTKEQHCNGVLDCKDGSDEMHC  105 (105)
Q Consensus        70 C~~~~~f~C~~-----g~ci~~~~~CDg~~dC~dgsDE~~C  105 (105)
                      |++ .+|+|.+     ++|||++++|||+.||.|+|||.+|
T Consensus         2 C~~-~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~C   41 (42)
T d1k7ba_           2 CPP-GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   41 (42)
T ss_dssp             CST-TEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCc-CcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhcc
Confidence            666 8899964     4699999999999999999999986

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.18  E-value=8.6e-12  Score=66.71  Aligned_cols=37  Identities=24%  Similarity=0.504  Sum_probs=31.5

Q ss_pred             CCCCCCeEEecCCCCCeeeeCCCCCcCCCCCCCCCCcCCc
Q psy1294          25 WCQSQGKVMCGIYPDVQCYDNRTQACDSVADCDNMKDEKH   64 (105)
Q Consensus        25 ~C~~~~~f~C~~~~~~~Ci~~~~~~CDg~~DC~dgsDE~~   64 (105)
                      .|.+ ++|+|.. .+++|||. .|+|||+.||.|||||..
T Consensus         2 ~C~~-~~f~C~~-~~~~CI~~-~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           2 HCDE-HESECRG-DVPECIHD-LLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             CCCT-TEEECSS-SSCCEEEG-GGTTSSSCCSSSSTTTSH
T ss_pred             CCCC-CeeECCC-CCCCEech-hhcCCCCccCCCCCcCCc
Confidence            4776 8999962 24789999 999999999999999964

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-11  Score=65.46  Aligned_cols=34  Identities=38%  Similarity=0.538  Sum_probs=30.8

Q ss_pred             cCCCCceecCCCCeEeCCcccCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGSGETYTKEQHCNGVLDCKDGSDEM  103 (105)
Q Consensus        70 C~~~~~f~C~~g~ci~~~~~CDg~~dC~dgsDE~  103 (105)
                      |..+.+|+|.+|+||+..++|||+.||.|+|||.
T Consensus         6 C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~   39 (44)
T d1xfea2           6 CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP   39 (44)
T ss_dssp             CCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSC
T ss_pred             CCCCCeEECCCCCeEchhhcCCCCCCCCCCCccC
Confidence            5433899999999999999999999999999996

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.05  E-value=5.6e-11  Score=63.15  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             cCCCCceecC--CCCeEeCCcccCCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCG--SGETYTKEQHCNGVLDCKDGSDEMH  104 (105)
Q Consensus        70 C~~~~~f~C~--~g~ci~~~~~CDg~~dC~dgsDE~~  104 (105)
                      |++ .+|+|.  +++||+.+++|||+.||.|||||..
T Consensus         2 C~~-~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEK-RTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCT-TEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCC-CeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            566 899996  4689999999999999999999964

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.05  E-value=5.2e-11  Score=63.58  Aligned_cols=33  Identities=33%  Similarity=0.558  Sum_probs=29.8

Q ss_pred             cCCCCceecCC--CCeEeCCcccCCCCCCCCCCCCC
Q psy1294          70 LPVVLSLQCGS--GETYTKEQHCNGVLDCKDGSDEM  103 (105)
Q Consensus        70 C~~~~~f~C~~--g~ci~~~~~CDg~~dC~dgsDE~  103 (105)
                      |++ ++|+|.+  ++||+..++|||+.||.|||||.
T Consensus         3 C~~-~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           3 CDE-HESECRGDVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCT-TEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCC-CeeECCCCCCCEechhhcCCCCccCCCCCcCC
Confidence            566 9999974  57999999999999999999995