Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 111
smart00883 93
smart00883, Cpn10, Chaperonin 10 Kd subunit
9e-36 cd00320 93
cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or
1e-34 COG0234 96
COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttr
3e-29 PRK00364 95
PRK00364, groES, co-chaperonin GroES; Reviewed
9e-29 pfam00166 91
pfam00166, Cpn10, Chaperonin 10 Kd subunit
2e-27 PTZ00414 100
PTZ00414, PTZ00414, 10 kDa heat shock protein; Pro
7e-20 PRK14533 91
PRK14533, groES, co-chaperonin GroES; Provisional
8e-09
>gnl|CDD|197951 smart00883, Cpn10, Chaperonin 10 Kd subunit
Back Hide alignment and domain information
Score = 117 bits (295), Expect = 9e-36
Identities = 44/93 (47%), Positives = 65/93 (69%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
K +PL DR+LV + E KT GG++IP+ A+++ VVAVGPG R NGE + V V
Sbjct: 1 KIKPLGDRVLVKRIEEEEKTAGGIVIPDTAKEKPQEGEVVAVGPGKRLENGERVPLDVKV 60
Query: 75 GDKVLLPKFGGTKIEVEGQELHLFKEADLLAVI 107
GDKVL K+ GT+++++G+E + +E+D+LAVI
Sbjct: 61 GDKVLFGKYAGTEVKLDGEEYLILRESDILAVI 93
The chaperonins are 'helper' molecules required for correct folding and subsequent assembly of some proteins. These are required for normal cell growth, and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10). The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Length = 93
>gnl|CDD|238197 cd00320, cpn10, Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts
Back Show alignment and domain information
Score = 114 bits (287), Expect = 1e-34
Identities = 45/93 (48%), Positives = 67/93 (72%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
K +PL DR+LV + E KTKGG+++P+ A+++ VVAVGPG R NGE + V V
Sbjct: 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKV 60
Query: 75 GDKVLLPKFGGTKIEVEGQELHLFKEADLLAVI 107
GDKVL PK+ GT+++++G+E + +E+D+LAVI
Sbjct: 61 GDKVLFPKYAGTEVKLDGEEYLILRESDILAVI 93
It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface. Length = 93
>gnl|CDD|223312 COG0234, GroS, Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Score = 100 bits (252), Expect = 3e-29
Identities = 42/95 (44%), Positives = 66/95 (69%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
K +PL DR+LV + E KT GG+++P+ A+++ VVAVGPG R NGE + V V
Sbjct: 2 KIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKV 61
Query: 75 GDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIEK 109
GD+VL K+ GT+++++G+E + E+D+LA++EK
Sbjct: 62 GDRVLFGKYAGTEVKIDGEEYLILSESDILAIVEK 96
>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed
Back Show alignment and domain information
Score = 99.4 bits (249), Expect = 9e-29
Identities = 41/94 (43%), Positives = 65/94 (69%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
+PL DR+LV + E KT GG+++P+ A+++ VVAVGPG R NGE + V V
Sbjct: 2 NLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKV 61
Query: 75 GDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIE 108
GDKVL K+ GT+++++G+E + +E+D+LA++E
Sbjct: 62 GDKVLFGKYAGTEVKIDGEEYLILRESDILAIVE 95
>gnl|CDD|201050 pfam00166, Cpn10, Chaperonin 10 Kd subunit
Back Show alignment and domain information
Score = 96.1 bits (240), Expect = 2e-27
Identities = 47/92 (51%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 16 FRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVG 75
+PL DR+LV ++E KTKGG+++P+ A+++ N VVAVGPGAR NGE + V VG
Sbjct: 1 IKPLGDRVLVKREEAEEKTKGGIILPDSAKEKPNQGEVVAVGPGARN-NGEDVPLEVKVG 59
Query: 76 DKVLLPKFGGTKIEVEGQELHLFKEADLLAVI 107
DKVL PK+ GT+++++G+E + KE D+LAVI
Sbjct: 60 DKVLFPKYAGTEVKIDGEEYLILKEKDILAVI 91
This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis. Length = 91
>gnl|CDD|173604 PTZ00414, PTZ00414, 10 kDa heat shock protein; Provisional
Back Show alignment and domain information
Score = 77.0 bits (189), Expect = 7e-20
Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVN 73
+K +PL R+LV + +TK GVLIPE+ +VN VVAV + P V
Sbjct: 10 KKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVK 64
Query: 74 VGDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIE 108
VGD VLLP+FGG+ ++VEG+E L+ E LL V++
Sbjct: 65 VGDTVLLPEFGGSSVKVEGEEFFLYNEDSLLGVLQ 99
>gnl|CDD|184730 PRK14533, groES, co-chaperonin GroES; Provisional
Back Show alignment and domain information
Score = 48.3 bits (115), Expect = 8e-09
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
K PL +R+L+ + KT+GG+++P+ A+++ A VVAVG + + E + V
Sbjct: 2 KVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVG---KLDDEEDFD--IKV 56
Query: 75 GDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIE 108
GDKV+ K+ GT+I+++ ++ + D+LA IE
Sbjct: 57 GDKVIFSKYAGTEIKIDDEDYIIIDVNDILAKIE 90
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
111
COG0234 96
GroS Co-chaperonin GroES (HSP10) [Posttranslationa
100.0 PRK00364 95
groES co-chaperonin GroES; Reviewed
100.0 PTZ00414 100
10 kDa heat shock protein; Provisional
100.0 cd00320 93
cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C
100.0 PRK14533 91
groES co-chaperonin GroES; Provisional
100.0 PF00166 93
Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208
100.0 KOG1641|consensus 104
99.98 KOG1197|consensus 336
91.95 PF08240 109
ADH_N: Alcohol dehydrogenase GroES-like domain; In
90.27 COG1062 366
AdhC Zn-dependent alcohol dehydrogenases, class II
89.81 COG4384 203
Mu-like prophage protein gp45 [Function unknown]
84.66 COG0604 326
Qor NADPH:quinone reductase and related Zn-depende
83.06 COG1329 166
Transcriptional regulators, similar to M. xanthus
82.93 KOG0025|consensus 354
81.79
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
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Probab=100.00 E-value=9.4e-41 Score=226.81 Aligned_cols=96 Identities=44% Similarity=0.785 Sum_probs=93.8
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ 93 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~ 93 (111)
|+|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||+|..+++|+.+|++||+||+|+|++|+|+++++||+
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcEEEEeec
Q psy12951 94 ELHLFKEADLLAVIEK 109 (111)
Q Consensus 94 ~y~iv~~~DIlavi~~ 109 (111)
+|++++++||||++++
T Consensus 81 eylil~e~DILAiv~~ 96 (96)
T COG0234 81 EYLILSESDILAIVEK 96 (96)
T ss_pred EEEEechHHeeEEecC
Confidence 9999999999999874
>PRK00364 groES co-chaperonin GroES; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=1.1e-38 Score=216.71 Aligned_cols=95 Identities=43% Similarity=0.773 Sum_probs=92.5
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ 93 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~ 93 (111)
++|+||+|||||++.+++++|+|||+||+++++++++|+|+|||||+.+++|++.|++||+||+|+|++|+|++|+++++
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~ 80 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGE 80 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcEEEEee
Q psy12951 94 ELHLFKEADLLAVIE 108 (111)
Q Consensus 94 ~y~iv~~~DIlavi~ 108 (111)
+|+|+|++||||+++
T Consensus 81 ~y~iv~~~DIlavi~ 95 (95)
T PRK00364 81 EYLILRESDILAIVE 95 (95)
T ss_pred EEEEEEHHHEEEEeC
Confidence 999999999999985
>PTZ00414 10 kDa heat shock protein; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1e-37 Score=214.14 Aligned_cols=93 Identities=44% Similarity=0.759 Sum_probs=88.1
Q ss_pred hcccceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEE
Q psy12951 11 TLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEV 90 (111)
Q Consensus 11 ~~~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~ 90 (111)
.++++|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||+|..+ .|++||+||+|+|++|+|++|++
T Consensus 7 ~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gtevk~ 81 (100)
T PTZ00414 7 PALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSSVKV 81 (100)
T ss_pred cccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcEEEE
Confidence 5578899999999999999999999999999999999999999999999753 48899999999999999999999
Q ss_pred CCEEEEEEecCcEEEEee
Q psy12951 91 EGQELHLFKEADLLAVIE 108 (111)
Q Consensus 91 ~g~~y~iv~~~DIlavi~ 108 (111)
+|++|++++++||||+++
T Consensus 82 dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 82 EGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred CCEEEEEEEhHHEEEEec
Confidence 999999999999999986
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts
Back Show alignment and domain information
Probab=100.00 E-value=2.5e-37 Score=209.31 Aligned_cols=93 Identities=48% Similarity=0.852 Sum_probs=90.9
Q ss_pred ceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCEE
Q psy12951 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQE 94 (111)
Q Consensus 15 ~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~~ 94 (111)
+|+||+|||||++.++|++|+|||+||+++++++++|+|+|||||+.+++|++.|++|++||+|+|++|+|++|+++|++
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE 80 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcEEEEe
Q psy12951 95 LHLFKEADLLAVI 107 (111)
Q Consensus 95 y~iv~~~DIlavi 107 (111)
|+|+|++||||++
T Consensus 81 y~i~~~~DIla~i 93 (93)
T cd00320 81 YLILRESDILAVI 93 (93)
T ss_pred EEEEEHHHEEEEC
Confidence 9999999999985
It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
>PRK14533 groES co-chaperonin GroES; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=7e-37 Score=206.89 Aligned_cols=91 Identities=34% Similarity=0.536 Sum_probs=86.2
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ 93 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~ 93 (111)
++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||+|.. ..|++||+||+|+|++|+|++|+++|+
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~ 75 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKIDDE 75 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEECCE
Confidence 479999999999999999999999999999999999999999999852 458899999999999999999999999
Q ss_pred EEEEEecCcEEEEeec
Q psy12951 94 ELHLFKEADLLAVIEK 109 (111)
Q Consensus 94 ~y~iv~~~DIlavi~~ 109 (111)
+|++++++||||++++
T Consensus 76 ~y~iv~e~DILa~i~~ 91 (91)
T PRK14533 76 DYIIIDVNDILAKIEE 91 (91)
T ss_pred EEEEEEhHhEEEEeeC
Confidence 9999999999999985
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []
Back Show alignment and domain information
Probab=100.00 E-value=2.5e-35 Score=198.97 Aligned_cols=93 Identities=47% Similarity=0.772 Sum_probs=87.7
Q ss_pred ceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCEE
Q psy12951 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQE 94 (111)
Q Consensus 15 ~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~~ 94 (111)
+|+||+|||||++.+.+++|+|||+||+++++++++|+|||||+|+.+.+|+..|+.|++||+|+|++|+|++++++|++
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEK 80 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEE
Confidence 58999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcEEEEe
Q psy12951 95 LHLFKEADLLAVI 107 (111)
Q Consensus 95 y~iv~~~DIlavi 107 (111)
|+++|++||||++
T Consensus 81 ~~~~~~~dIlavi 93 (93)
T PF00166_consen 81 YLIVREDDILAVI 93 (93)
T ss_dssp EEEEEGGGEEEEE
T ss_pred EEEEEHHHeEEEC
Confidence 9999999999986
These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
>KOG1641|consensus
Back Show alignment and domain information
Probab=99.98 E-value=3.9e-33 Score=191.10 Aligned_cols=97 Identities=48% Similarity=0.783 Sum_probs=92.5
Q ss_pred hcccceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEE
Q psy12951 11 TLSQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEV 90 (111)
Q Consensus 11 ~~~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~ 90 (111)
..++++.|+.|||||++.+++++|+|||+||+++++|.++|+|+|||||..+..|+.+|..|++||+|||++|+|++|++
T Consensus 6 ~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~l 85 (104)
T KOG1641|consen 6 WEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVKL 85 (104)
T ss_pred hhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-EEEEEEecCcEEEEe
Q psy12951 91 EG-QELHLFKEADLLAVI 107 (111)
Q Consensus 91 ~g-~~y~iv~~~DIlavi 107 (111)
++ ++|+++|.+|+|+.+
T Consensus 86 ~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 86 GDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred cCCceeEEecchhhhhhh
Confidence 85 699999999998865
>KOG1197|consensus
Back Show alignment and domain information
Probab=91.95 E-value=0.13 Score=41.65 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=29.0
Q ss_pred cceEE-eccCc--cccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC-CC
Q psy12951 35 KGGVL-IPEKA--QQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK-FG 84 (111)
Q Consensus 35 ~gGIi-LP~~~--~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y~ 84 (111)
..||| .|+.- -.+.-.|+|+|||.|.. +.++||+|.|-. |+
T Consensus 55 RkGlY~~~plPytpGmEaaGvVvAvG~gvt---------drkvGDrVayl~~~g 99 (336)
T KOG1197|consen 55 RKGLYDPAPLPYTPGMEAAGVVVAVGEGVT---------DRKVGDRVAYLNPFG 99 (336)
T ss_pred hccccCCCCCCcCCCcccceEEEEecCCcc---------ccccccEEEEeccch
Confidence 34677 33321 23567899999999986 579999999855 44
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1
Back Show alignment and domain information
Probab=90.27 E-value=0.17 Score=33.60 Aligned_cols=26 Identities=46% Similarity=0.714 Sum_probs=21.0
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|....
T Consensus 38 E~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 38 EGVGVVVAVGPGVT---------DFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEEEESTTTT---------SSGTT-EEEEES
T ss_pred ceeeeeeeeccccc---------cccccceeeeec
Confidence 57899999999875 489999999854
1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Back Show alignment and domain information
Probab=89.81 E-value=0.22 Score=41.26 Aligned_cols=53 Identities=32% Similarity=0.374 Sum_probs=35.5
Q ss_pred eeCCeEEEEecCC-----CCcccceEEeccCc---cccceeeEEEEecCceeCCCCeeecceeeeCCEEEc
Q psy12951 18 PLLDRILVIKDEP-----LTKTKGGVLIPEKA---QQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLL 80 (111)
Q Consensus 18 PlgDrVLVk~~~~-----e~~T~gGIiLP~~~---~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~ 80 (111)
|--|-|||+.... .-.+-+|.+ |+.- -.-.-.|+|.+||+|.. +||+||+|+.
T Consensus 25 P~~gEVlVri~AtGVCHTD~~~~~G~~-p~~~P~vLGHEgAGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 25 PRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVLGHEGAGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred CCCCeEEEEEEEeeccccchhhhcCCC-CCCCceecccccccEEEEecCCcc---------ccCCCCEEEE
Confidence 7788899988622 223333332 2221 12356799999999987 7999999985
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Back Show alignment and domain information
Probab=84.66 E-value=2.8 Score=32.14 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCCeeecceeeeCCEEEccCCC-------ceEEEECCEEEEEEecCc
Q psy12951 63 PNGEYIKPVVNVGDKVLLPKFG-------GTKIEVEGQELHLFKEAD 102 (111)
Q Consensus 63 ~~G~~~p~~vk~GD~Vl~~~y~-------g~~v~~~g~~y~iv~~~D 102 (111)
.++...|+.++.||+++|..++ |..++.+-+.|.+....+
T Consensus 87 ~~~syR~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~a~~~ 133 (203)
T COG4384 87 QHGSYRITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVNAATG 133 (203)
T ss_pred cCCccccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEecCCc
Confidence 4566678899999999999876 345666667777555444
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Back Show alignment and domain information
Probab=83.06 E-value=1.3 Score=35.37 Aligned_cols=71 Identities=28% Similarity=0.337 Sum_probs=43.2
Q ss_pred eeCCeEEEEecCC-----CCcccceEE-----eccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC-CCce
Q psy12951 18 PLLDRILVIKDEP-----LTKTKGGVL-----IPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK-FGGT 86 (111)
Q Consensus 18 PlgDrVLVk~~~~-----e~~T~gGIi-----LP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~-y~g~ 86 (111)
|--+.|||+.... +.....|-. +|- .-..-..|+|+++|++.. ..++||+|.+.. ..
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~-i~G~d~aG~V~avG~~V~---------~~~~GdrV~~~~~~~-- 92 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPF-IPGSEAAGVVVAVGSGVT---------GFKVGDRVAALGGVG-- 92 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCC-cccceeEEEEEEeCCCCC---------CcCCCCEEEEccCCC--
Confidence 6668899998732 222333321 122 123357899999999876 348999999984 21
Q ss_pred EEEECC--EEEEEEecCcE
Q psy12951 87 KIEVEG--QELHLFKEADL 103 (111)
Q Consensus 87 ~v~~~g--~~y~iv~~~DI 103 (111)
.+| -+|..+.++.+
T Consensus 93 ---~~G~~AEy~~v~a~~~ 108 (326)
T COG0604 93 ---RDGGYAEYVVVPADWL 108 (326)
T ss_pred ---CCCcceeEEEecHHHc
Confidence 112 36666665433
>COG1329 Transcriptional regulators, similar to M
Back Show alignment and domain information
Probab=82.93 E-value=1.4 Score=32.97 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=25.7
Q ss_pred ceeeeCCEEEccCCCceEE------EECC--EEEEEEe--cCcEEEEe
Q psy12951 70 PVVNVGDKVLLPKFGGTKI------EVEG--QELHLFK--EADLLAVI 107 (111)
Q Consensus 70 ~~vk~GD~Vl~~~y~g~~v------~~~g--~~y~iv~--~~DIlavi 107 (111)
+.+++||+|+||.|+.-.| ++.| .+|+++. .+|....+
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~V 50 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMV 50 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEe
Confidence 4689999999999984333 3455 4777765 44555444
xanthus CarD [Transcription]
>KOG0025|consensus
Back Show alignment and domain information
Probab=81.79 E-value=3 Score=34.38 Aligned_cols=72 Identities=26% Similarity=0.216 Sum_probs=43.0
Q ss_pred eeCCeEEEEecCCCCcc-----cceEEe--ccC--ccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCC-ceE
Q psy12951 18 PLLDRILVIKDEPLTKT-----KGGVLI--PEK--AQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFG-GTK 87 (111)
Q Consensus 18 PlgDrVLVk~~~~e~~T-----~gGIiL--P~~--~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~-g~~ 87 (111)
|..| |+|+-+.+.-.. --|.|= |+- .......|+||+||++.. .+|+||+|+-..-+ |+.
T Consensus 46 ~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vk---------gfk~Gd~VIp~~a~lGtW 115 (354)
T KOG0025|consen 46 PGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVK---------GFKPGDWVIPLSANLGTW 115 (354)
T ss_pred CCCc-eeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcC---------ccCCCCeEeecCCCCccc
Confidence 5666 888887554222 235441 221 123467899999998654 48999999966533 533
Q ss_pred ---EEECCEEEEEEe
Q psy12951 88 ---IEVEGQELHLFK 99 (111)
Q Consensus 88 ---v~~~g~~y~iv~ 99 (111)
..+++.+++-+.
T Consensus 116 ~t~~v~~e~~Li~vd 130 (354)
T KOG0025|consen 116 RTEAVFSESDLIKVD 130 (354)
T ss_pred eeeEeecccceEEcC
Confidence 344544444443
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 111
d1aono_ 97
b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia c
1e-28 d1p3ha_ 99
b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium
9e-28 d1we3o_ 96
b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus therm
3e-26
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]} Length = 97
Back Hide information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]
Score = 97.6 bits (243), Expect = 1e-28
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNV 74
RPL DR++V + E TK+ GG+++ A + V+AVG G NGE V V
Sbjct: 2 NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61
Query: 75 GDKVLLPKF-GGTKIEVEGQELHLFKEADLLAVIE 108
GD V+ G +++ +E+ + E+D+LA++E
Sbjct: 62 GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 95.3 bits (237), Expect = 9e-28
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 15 KFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPV-VN 73
+PL D+ILV +E T T G++IP+ A+++ VVAVGPG +GE P+ V
Sbjct: 4 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63
Query: 74 VGDKVLLPKFGGTKIEVEGQELHLFKEADLLAVIEK 109
GD V+ K+GGT+I+ G+E + D+LAV+ K
Sbjct: 64 EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVVSK 99
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]} Length = 96
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]
Score = 91.5 bits (227), Expect = 3e-26
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 17 RPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGD 76
+PL DR++V + E KTKGG+++P+ A+++ V+AVG G NG+ + V GD
Sbjct: 5 KPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGD 64
Query: 77 KVLLPKFGGTKIEVEGQELHLFKEADLLAVIE 108
V+ K+GGT+IE++G+E + E DLLAV++
Sbjct: 65 IVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 96
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 111
d1p3ha_ 99
Chaperonin-10 (GroES) {Mycobacterium tuberculosis
100.0 d1aono_ 97
Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56
100.0 d1we3o_ 96
Chaperonin-10 (GroES) {Thermus thermophilus [TaxId
100.0 d1g31a_ 107
GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665
97.67 d1qora1 147
Quinone oxidoreductase {Escherichia coli [TaxId: 5
90.73 d1f8fa1 194
Benzyl alcohol dehydrogenase {Acinetobacter calcoa
90.09 d1jqba1 177
Bacterial secondary alcohol dehydrogenase {Clostri
89.95 d1e3ja1 178
Ketose reductase (sorbitol dehydrogenase) {Silverl
89.6 d1jvba1 177
Alcohol dehydrogenase {Archaeon Sulfolobus solfata
89.1 d1kola1 201
Formaldehyde dehydrogenase {Pseudomonas putida [Ta
89.02 d1yb5a1 150
Quinone oxidoreductase {Human (Homo sapiens) [TaxI
87.63 d1llua1 175
Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax
86.95 d1pl8a1 185
Ketose reductase (sorbitol dehydrogenase) {Human (
86.68 d1uufa1 179
Hypothetical protein YahK {Escherichia coli [TaxId
85.96 d2jhfa1 198
Alcohol dehydrogenase {Horse (Equus caballus) [Tax
85.79 d1h2ba1 171
Alcohol dehydrogenase {Archaeon Aeropyrum pernix [
84.2 d1p0fa1 198
Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:
83.41 d1vj0a1 184
Hypothetical protein TM0436 {Thermotoga maritima [
83.34 d1rjwa1 171
Alcohol dehydrogenase {Bacillus stearothermophilus
82.69 d1e3ia1 202
Alcohol dehydrogenase {Mouse (Mus musculus), class
81.17 d1cdoa1 199
Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI
80.69
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}
Back Hide information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.1e-35 Score=200.06 Aligned_cols=97 Identities=39% Similarity=0.660 Sum_probs=91.7
Q ss_pred ccceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCC-eeecceeeeCCEEEccCCCceEEEEC
Q psy12951 13 SQKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNG-EYIKPVVNVGDKVLLPKFGGTKIEVE 91 (111)
Q Consensus 13 ~~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G-~~~p~~vk~GD~Vl~~~y~g~~v~~~ 91 (111)
-++|+||+|||||++.+.+++|+|||+||+++++++..|+|+|||+|+...+| ...|+.||+||+|+|++|+|++|+++
T Consensus 2 km~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~~~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~d 81 (99)
T d1p3ha_ 2 KVNIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYN 81 (99)
T ss_dssp CCEEEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEET
T ss_pred CccceEcCCEEEEEEcchhcccccceEeccccccCceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEEC
Confidence 47899999999999999999999999999999999999999999999988665 46788999999999999999999999
Q ss_pred CEEEEEEecCcEEEEeec
Q psy12951 92 GQELHLFKEADLLAVIEK 109 (111)
Q Consensus 92 g~~y~iv~~~DIlavi~~ 109 (111)
|++|++++++||||++++
T Consensus 82 g~~y~ii~e~dIlavi~~ 99 (99)
T d1p3ha_ 82 GEEYLILSARDVLAVVSK 99 (99)
T ss_dssp TEEEEEEEGGGEEEEEEC
T ss_pred CEEEEEEEHHHEEEEEeC
Confidence 999999999999999974
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-36 Score=199.77 Aligned_cols=95 Identities=34% Similarity=0.531 Sum_probs=91.0
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCc-eEEEECC
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG-TKIEVEG 92 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g-~~v~~~g 92 (111)
|+|+||+|||||++.+.+++|+|||+||++++++++.|+|+|||+|....+|+..|+.||+||+|+|++|+| ..++++|
T Consensus 1 m~ikPlgdrVLVk~~~~e~kT~gGIiLp~~~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg 80 (97)
T d1aono_ 1 MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDN 80 (97)
T ss_dssp CCEEECTTEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSS
T ss_pred CCceEcCCEEEEEEcccccEecceEEECCccccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999877 5578999
Q ss_pred EEEEEEecCcEEEEee
Q psy12951 93 QELHLFKEADLLAVIE 108 (111)
Q Consensus 93 ~~y~iv~~~DIlavi~ 108 (111)
++|++++++||||+++
T Consensus 81 ~~y~ii~e~dIlavie 96 (97)
T d1aono_ 81 EEVLIMSESDILAIVE 96 (97)
T ss_dssp CEEEEEETTTEEEEEC
T ss_pred EEEEEEEHHHEEEEEe
Confidence 9999999999999997
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.5e-36 Score=199.79 Aligned_cols=95 Identities=40% Similarity=0.694 Sum_probs=92.6
Q ss_pred cceeeeCCeEEEEecCCCCcccceEEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCceEEEECCE
Q psy12951 14 QKFRPLLDRILVIKDEPLTKTKGGVLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGGTKIEVEGQ 93 (111)
Q Consensus 14 ~~i~PlgDrVLVk~~~~e~~T~gGIiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g~~v~~~g~ 93 (111)
++++||+|||||++.+.+++|+||||||++++++++.|+|+|+|+|+...+|...|+.+++||+|+|++|+|++|+++|+
T Consensus 2 ~~ikPlgdrVLVk~~~~~~kT~gGIiLp~~~~~k~~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~~g~~v~~~g~ 81 (96)
T d1we3o_ 2 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGE 81 (96)
T ss_dssp CCEEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECSSC
T ss_pred CcceEcCCEEEEEEccccceecccEEecccccccceEEEEeeecceEecCCCCEEEeeEEeCCEEEEccCCCcEEEECCE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcEEEEee
Q psy12951 94 ELHLFKEADLLAVIE 108 (111)
Q Consensus 94 ~y~iv~~~DIlavi~ 108 (111)
+|++++++||||+++
T Consensus 82 ~y~ii~e~dIlavie 96 (96)
T d1we3o_ 82 EYVILSERDLLAVLQ 96 (96)
T ss_dssp EEEEECTTTEEEEEC
T ss_pred EEEEEEHHHEEEEeC
Confidence 999999999999986
>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]
Probab=97.67 E-value=9.3e-06 Score=53.66 Aligned_cols=61 Identities=26% Similarity=0.453 Sum_probs=49.4
Q ss_pred ceeeeCCeEEEEec----CCCCcccceEEeccCcc-ccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 15 KFRPLLDRILVIKD----EPLTKTKGGVLIPEKAQ-QEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 15 ~i~PlgDrVLVk~~----~~e~~T~gGIiLP~~~~-~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
.|+.+++.|++... ..|.+|++||+|-...+ +-|..|+|++||+.+.. + -+|+||.|+++.
T Consensus 4 ~ika~~e~VI~~~~aa~aGdEi~S~~Giiig~r~qgeiPl~~~viSVG~dVpe--~-----~~kvG~~vlLP~ 69 (107)
T d1g31a_ 4 PIRAVGEYVILVSEPAQAGDEEVTESGLIIGKRVQGEVPELCVVHSVGPDVPE--G-----FCEVGDLTSLPV 69 (107)
T ss_dssp SCEECTTEEEEEECSSCGGGCTTSCTTCCCCHHHHHHSEEEEEEEEECTTSCT--T-----SCCTTCEEEEEG
T ss_pred CccccccEEEEEeccccCCceeecccceEEEeccCCCCceeEEEEEeCCCCCH--H-----HhccccEEEccC
Confidence 57889999999987 34789999999965444 46999999999997752 2 578999999976
>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.059 Score=35.13 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=42.1
Q ss_pred eeeCCeEEEEecCCC-----CcccceEEeccC---ccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC--CCce
Q psy12951 17 RPLLDRILVIKDEPL-----TKTKGGVLIPEK---AQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK--FGGT 86 (111)
Q Consensus 17 ~PlgDrVLVk~~~~e-----~~T~gGIiLP~~---~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~--y~g~ 86 (111)
.|--|-|||+..-.- -....|.+=+.. .-.....|+|+++|++.. .+++||+|.+.. +++.
T Consensus 24 ~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~---------~~~vGdrV~~~~~~~G~~ 94 (147)
T d1qora1 24 DPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVK---------HIKAGDRVVYAQSALGAY 94 (147)
T ss_dssp CCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCC---------SCCTTCEEEESCCSSCCS
T ss_pred CCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeecc---------cccccceeeeeccccccc
Confidence 466788999987321 111223221111 112357899999998864 589999998643 3221
Q ss_pred EEEECCEEEEEEecCcEE
Q psy12951 87 KIEVEGQELHLFKEADLL 104 (111)
Q Consensus 87 ~v~~~g~~y~iv~~~DIl 104 (111)
-+|..+..+.++
T Consensus 95 ------ae~~~v~~~~~~ 106 (147)
T d1qora1 95 ------SSVHNIIADKAA 106 (147)
T ss_dssp ------BSEEEEEGGGEE
T ss_pred ------eeEEEEehHHeE
Confidence 345556555543
>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.09 E-value=0.072 Score=36.62 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=33.7
Q ss_pred eeeCCeEEEEecCCC-----CcccceEE---eccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 17 RPLLDRILVIKDEPL-----TKTKGGVL---IPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 17 ~PlgDrVLVk~~~~e-----~~T~gGIi---LP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
.|=.+-||||..-.- -..-.|.+ +|- .-.-...|+|+++|++.. .+++||+|++.
T Consensus 25 ~p~~geVlVkv~a~gic~sD~~~~~G~~~~~~P~-i~GHE~~G~V~~vG~~v~---------~~~vGDrVv~~ 87 (194)
T d1f8fa1 25 QPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPA-VLGHEGSGIIEAIGPNVT---------ELQVGDHVVLS 87 (194)
T ss_dssp CCCTTEEEEEEEEEECCHHHHHHHTTSSCCCSSB-CCCCEEEEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred CCCCCEEEEEEEEEEecCchHhhhhhcccccCCc-ccccceEEEeeecCccce---------eEccCceeeee
Confidence 366788999886211 01111211 111 112367899999999875 58999999874
>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.95 E-value=0.09 Score=35.71 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=20.9
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+|+||+|...
T Consensus 60 E~~G~V~~vG~~v~---------~~~vGdrV~v~ 84 (177)
T d1jqba1 60 EAVGEVVEVGSEVK---------DFKPGDRVIVP 84 (177)
T ss_dssp CEEEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred eeeEEeeecccccc---------eecCCCcEEEe
Confidence 56799999999865 58999999853
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.60 E-value=0.083 Score=35.33 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|.+..
T Consensus 64 E~~G~Vv~vG~~v~---------~~~~GdrV~~~~ 89 (178)
T d1e3ja1 64 EASGTVVKVGKNVK---------HLKKGDRVAVEP 89 (178)
T ss_dssp EEEEEEEEECTTCC---------SCCTTCEEEECC
T ss_pred ccceEEEecCcccC---------CCCCCCEEEECc
Confidence 57899999999875 589999998643
>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.10 E-value=0.05 Score=36.35 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=35.4
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccCCCc-----------------eE---EEECC--EEEEEEecCcEEE
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKFGG-----------------TK---IEVEG--QELHLFKEADLLA 105 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y~g-----------------~~---v~~~g--~~y~iv~~~DIla 105 (111)
...|+|+++|++.. .+++||+|....+.+ .. +..+| -+|+.+++.+.+.
T Consensus 69 E~~G~V~~~g~~v~---------~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~ 139 (177)
T d1jvba1 69 EIAGKIEEVGDEVV---------GYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMY 139 (177)
T ss_dssp EEEEEEEEECTTCC---------SCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEE
T ss_pred eEEEEEeeeccCcc---------ccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEE
Confidence 57799999998764 578999997643211 00 11233 4788888888777
Q ss_pred Eeec
Q psy12951 106 VIEK 109 (111)
Q Consensus 106 vi~~ 109 (111)
++.+
T Consensus 140 ~~~~ 143 (177)
T d1jvba1 140 KLRR 143 (177)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 6654
>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]
Probab=89.02 E-value=0.093 Score=36.34 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.6
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
-...|+|+++|++.. .+++||+|...
T Consensus 66 HE~~G~Vv~vG~~V~---------~~~vGdrV~v~ 91 (201)
T d1kola1 66 HEITGEVIEKGRDVE---------NLQIGDLVSVP 91 (201)
T ss_dssp CCEEEEEEEECTTCC---------SCCTTCEEECC
T ss_pred ceeeeeeeccccccc---------cccccceeEEe
Confidence 356899999999875 58999999864
>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.12 Score=33.92 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=41.1
Q ss_pred eeeCCeEEEEecCCC-----CcccceEEeccC----ccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC--CCc
Q psy12951 17 RPLLDRILVIKDEPL-----TKTKGGVLIPEK----AQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK--FGG 85 (111)
Q Consensus 17 ~PlgDrVLVk~~~~e-----~~T~gGIiLP~~----~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~--y~g 85 (111)
.|--|-||||..-.- -....|.+-+.. .-.-...|+|+++|++.. .+++||+|+... ++|
T Consensus 27 ~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~---------~~~vGdrV~~~~~~~G~ 97 (150)
T d1yb5a1 27 IPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS---------AFKKGDRVFTSSTISGG 97 (150)
T ss_dssp CCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCT---------TCCTTCEEEESCCSSCS
T ss_pred CCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceee---------ccccCcccccccccccc
Confidence 355688999886221 111122211110 012357899999999764 589999997542 222
Q ss_pred eEEEECCEEEEEEecCcEE
Q psy12951 86 TKIEVEGQELHLFKEADLL 104 (111)
Q Consensus 86 ~~v~~~g~~y~iv~~~DIl 104 (111)
. -+|++++++.+.
T Consensus 98 ~------ae~~~v~~~~~~ 110 (150)
T d1yb5a1 98 Y------AEYALAADHTVY 110 (150)
T ss_dssp S------BSEEEEEGGGEE
T ss_pred c------cccccccccccc
Confidence 1 356666665543
>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.95 E-value=0.17 Score=33.51 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=21.5
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
-...|+|+++|++.. .+++||+|.+.
T Consensus 66 hE~~G~V~~~G~~v~---------~~~~GdrV~~~ 91 (175)
T d1llua1 66 HEGVGYVAAVGSGVT---------RVKEGDRVGIP 91 (175)
T ss_dssp SCEEEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred CcceEEEEEeCCCcc---------ccccCCEEEec
Confidence 367899999999875 47899999864
>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.18 Score=33.97 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=21.8
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
-...|+|+++|++.. .+++||+|.+..
T Consensus 69 hE~~G~V~~vG~~v~---------~~~~GdrV~~~~ 95 (185)
T d1pl8a1 69 HEASGTVEKVGSSVK---------HLKPGDRVAIEP 95 (185)
T ss_dssp CEEEEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred eeeeeeEEEecccee---------eecccccceecc
Confidence 357899999999764 589999998643
>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]
Probab=85.96 E-value=0.18 Score=34.10 Aligned_cols=57 Identities=18% Similarity=0.009 Sum_probs=34.0
Q ss_pred eeeeCCeEEEEecCCC-----Ccccce----EEeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 16 FRPLLDRILVIKDEPL-----TKTKGG----VLIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 16 i~PlgDrVLVk~~~~e-----~~T~gG----IiLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
=.|--+-|||+....- -..-.| .-.|- .-.-...|+|+++|++.. .+++||+|.+..
T Consensus 21 P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~-i~GhE~~G~V~~vG~~V~---------~~~vGdrV~v~~ 86 (179)
T d1uufa1 21 REPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPC-VPGHEIVGRVVAVGDQVE---------KYAPGDLVGVGC 86 (179)
T ss_dssp CCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSB-CCCCCEEEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred CCCCCCEEEEEEEEECCCCCcceeeeeeeccccccc-cccccccccchhhccccc---------cCCCCCEEEEcc
Confidence 3477788999986321 001111 11111 112347899999999865 578999997543
>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]
Probab=85.79 E-value=0.23 Score=33.70 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=34.9
Q ss_pred eeeeCCeEEEEecCCC-----CcccceE---EeccCccccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 16 FRPLLDRILVIKDEPL-----TKTKGGV---LIPEKAQQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 16 i~PlgDrVLVk~~~~e-----~~T~gGI---iLP~~~~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
-.|--+-||||..-.- -..-.|- -+|- .-.-...|+|+++|++.. .+++||+|....
T Consensus 29 P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~~~P~-i~GHE~~G~Vv~vG~~v~---------~~~vGdrV~v~~ 93 (198)
T d2jhfa1 29 APPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPV-IAGHEAAGIVESIGEGVT---------TVRPGDKVIPLF 93 (198)
T ss_dssp CCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCSSB-CCCCSEEEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred CCCCCCEEEEEEEEEecccccceeecCCcccccce-ecccceeEEEEecCcccc---------CcCCCCEEEEee
Confidence 3467788999886210 0011111 1121 123467899999999765 579999998755
>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.20 E-value=0.31 Score=32.34 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=21.3
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
...|+|+++|++.. .+++||+|....
T Consensus 64 E~~G~V~~vG~~v~---------~~~~GdrV~~~~ 89 (171)
T d1h2ba1 64 ENVGYIEEVAEGVE---------GLEKGDPVILHP 89 (171)
T ss_dssp CEEEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred eeeeeeecccCCCC---------cCCCCCEEEEcC
Confidence 56899999999875 478999998643
>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.41 E-value=0.36 Score=32.93 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=33.7
Q ss_pred eeeCCeEEEEecCCC-----CcccceEEeccCc---cccceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 17 RPLLDRILVIKDEPL-----TKTKGGVLIPEKA---QQEVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 17 ~PlgDrVLVk~~~~e-----~~T~gGIiLP~~~---~~k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
.|-.+-||||....- -..-.|. .|... -.-...|+|+++|++.. .+++||+|....
T Consensus 30 ~p~~~eVlVkv~a~gICgsDlh~~~G~-~~~~~P~i~GHE~~G~Vv~~G~~v~---------~~~~GdrV~~~~ 93 (198)
T d1p0fa1 30 PPKAHEVRIKILASGICGSDSSVLKEI-IPSKFPVILGHEAVGVVESIGAGVT---------CVKPGDKVIPLF 93 (198)
T ss_dssp CCCTTEEEEEEEEEECCHHHHHHHTTS-SCCCSSBCCCCCEEEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred CCCCCEEEEEEEEEEEecccceeeeec-cccccccccceeeeeeeeecCcccc---------cCcCCCEEEEEe
Confidence 466788999876211 0011111 12211 12357899999999765 578999998744
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]
Probab=83.34 E-value=0.39 Score=32.65 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=24.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEccCC
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKF 83 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y 83 (111)
...|+|+++|++....++. .+++||+|.+..+
T Consensus 65 E~~G~V~~vG~~v~~~~~~----~~~~Gd~V~~~~~ 96 (184)
T d1vj0a1 65 EGAGRVVEVNGEKRDLNGE----LLKPGDLIVWNRG 96 (184)
T ss_dssp EEEEEEEEESSCCBCTTSC----BCCTTCEEEECSE
T ss_pred eeeeeeeEEeccccccccc----cccceeeeEeccc
Confidence 5789999999987654432 5789999997653
>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.69 E-value=0.33 Score=31.75 Aligned_cols=25 Identities=40% Similarity=0.705 Sum_probs=20.7
Q ss_pred ceeeEEEEecCceeCCCCeeecceeeeCCEEEcc
Q psy12951 48 VNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLP 81 (111)
Q Consensus 48 ~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~ 81 (111)
...|+|+++|++.. .+++||+|...
T Consensus 62 E~~G~Vv~vG~~v~---------~~~vGdrV~~~ 86 (171)
T d1rjwa1 62 EGVGIVEEVGPGVT---------HLKVGDRVGIP 86 (171)
T ss_dssp CEEEEEEEECTTCC---------SCCTTCEEEEC
T ss_pred EEEEEEEEeccccc---------CceeeeEEeec
Confidence 57899999998664 58999999854
>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=81.17 E-value=0.49 Score=31.95 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEccC
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPK 82 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~ 82 (111)
-...|+|+++|++.. .+++||+|....
T Consensus 67 HE~~G~V~~vG~~V~---------~~~~GdrV~~~~ 93 (202)
T d1e3ia1 67 HECAGIVESVGPGVT---------NFKPGDKVIPFF 93 (202)
T ss_dssp CEEEEEEEEECTTCC---------SCCTTCEEEECS
T ss_pred cccceEEeeecCCce---------eccCCCEEEEEe
Confidence 357899999999875 478999998754
>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}
Back Show information, alignment and structure
class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]
Probab=80.69 E-value=0.52 Score=31.92 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=22.5
Q ss_pred cceeeEEEEecCceeCCCCeeecceeeeCCEEEccCC
Q psy12951 47 EVNNAVVVAVGPGARTPNGEYIKPVVNVGDKVLLPKF 83 (111)
Q Consensus 47 k~~~G~VvaVG~G~~~~~G~~~p~~vk~GD~Vl~~~y 83 (111)
....|+|+++|++.. .+++||+|....+
T Consensus 68 hE~~G~v~~vG~~v~---------~~~~GdrV~~~~~ 95 (199)
T d1cdoa1 68 HEGAGIVESVGPGVT---------EFQPGEKVIPLFI 95 (199)
T ss_dssp CCEEEEEEEECTTCC---------SCCTTCEEEECSS
T ss_pred cccceEEEEEcCCCc---------eecCCCEEEEeee
Confidence 357899999999765 5899999977643
