Psyllid ID: psy12953

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MLSRIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQGRYVR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccccccHHHHccEEEEcccccccccccccccHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccccccHHHHccEEEEcHHHcccccccccccHHHHHHcHHHHHHHcccEEEEcccEEcccccccccccEEEEEcHHHccHHHHHHHHHHHHHcccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MLSRIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIyprsfrdvngdgtgdmrgiTEKLDHFVDLGieslwiqpfypaggadlgydvsnyvdvdplfgdmhdFEILIEEAhsrgkpkrtFREVTKSFANNQGRYVR
Flexible Loop (DISEMBL)
MLSRIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEeahsrgkpkrtfrevtksfannqgryvr
Low Complexity Region (SEG)
MLSRIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQGRYVR
Disordered region (IsUnstruct)
***RIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE****************************
Disordered Region (DISOPRED)
**SRIFLAFLGF**************WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN***RYVR
Disordered Region (DISEMBL)
MLSRIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQGRYVR
Disordered Region (DISPRO)
MLSRIFLAFLGFLSLV******PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQ*RYVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSRIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQGRYVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q9Z3R8	551	Probable alpha-glucosidas	yes	N/A	0.676	0.166	0.576	9e-29
Q17058	567	Alpha-glucosidase OS=Apis	no	N/A	0.830	0.199	0.433	4e-25
Q45101	555	Oligo-1,6-glucosidase OS=	yes	N/A	0.654	0.160	0.528	5e-24
P28904	551	Trehalose-6-phosphate hyd	N/A	N/A	0.654	0.161	0.483	9e-24
P07191	567	Probable maltase D OS=Dro	no	N/A	0.654	0.156	0.494	2e-23
O16098	632	Maltase 1 OS=Drosophila v	N/A	N/A	0.647	0.139	0.5	4e-23
P29094	562	Oligo-1,6-glucosidase OS=	no	N/A	0.669	0.161	0.494	6e-23
O34364	561	Probable oligo-1,6-glucos	yes	N/A	0.669	0.162	0.483	7e-23
P21332	558	Oligo-1,6-glucosidase OS=	no	N/A	0.669	0.163	0.483	2e-22
P40884	581	Oligo-1,6-glucosidase IMA	yes	N/A	0.654	0.153	0.505	2e-22

>sp|Q9Z3R8|AGLA_RHIME Probable alpha-glucosidase OS=Rhizobium meliloti (strain 1021) GN=aglA PE=3 SV=2

 Score =  125 bits (313), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 70/92 (76%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P ++WW+ A++YQIYPRSF+D NGDG GD++GIT +L H   LG +++WI PF+ +   D
Sbjct: 13  PDRDWWRGAVIYQIYPRSFQDTNGDGIGDLQGITARLPHIAGLGADAIWISPFFTSPMRD 72

Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYDVSNYVDVDP+FG + DF+ LI EAH  G
Sbjct: 73  FGYDVSNYVDVDPIFGTLEDFDALIAEAHRLG 104

Rhizobium meliloti (strain 1021) (taxid: 266834)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 0

>sp|Q17058|MAL1_APIME Alpha-glucosidase OS=Apis mellifera PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 73/113 (64%)

Query: 2   LSRIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDH 61
           +  + +  L  LS+V    +   +   +  I+YQ+YPRSF+D NGDG GD+ GI EKLDH
Sbjct: 1   MKAVIVFCLMALSIVDAAWKPLPENLKEDLIVYQVYPRSFKDSNGDGIGDIEGIKEKLDH 60

Query: 62  FVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           F+++G++  W+ P YP+   D GYD+SNY DV P+FG + D + L+  AH +G
Sbjct: 61  FLEMGVDMFWLSPIYPSPMVDFGYDISNYTDVHPIFGTISDLDNLVSAAHEKG 113

Converts sucrose in nectar to glucose and fructose.

Apis mellifera (taxid: 7460)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|Q45101|O16G_BACCO Oligo-1,6-glucosidase OS=Bacillus coagulans GN=malL PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 64/89 (71%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
           EWW+ A++YQIYPRSF D NGDG GD+RGI +KLD+   LGI+ +WI P Y +   D GY
Sbjct: 3   EWWKKAVVYQIYPRSFYDTNGDGIGDLRGIMDKLDYLKTLGIDCIWISPVYDSPQDDNGY 62

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           D+ +Y  +D +FG   D + L++EAH+RG
Sbjct: 63  DIRDYRKIDKMFGTNEDMDRLLDEAHARG 91

Bacillus coagulans (taxid: 1398)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P28904|TREC_ECOLI Trehalose-6-phosphate hydrolase OS=Escherichia coli (strain K12) GN=treC PE=3 SV=3

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 64/89 (71%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
            WWQ  ++YQIYP+SF+D  G GTGD+RG+ + LD+   LG++++W+ PFY +   D GY
Sbjct: 6   HWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDNGY 65

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           DV+NY  +DP +G + DF+ L+ +A SRG
Sbjct: 66  DVANYTAIDPTYGTLDDFDELVTQAKSRG 94

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 9

EC: 3

>sp|P07191|MAL1_DROME Probable maltase D OS=Drosophila melanogaster GN=LvpD PE=2 SV=2

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 66/89 (74%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
           +WW+ A +YQIYPRSF+D +GDG GD++GIT +L +  ++GI + W+ P + +  +D GY
Sbjct: 26  DWWENASLYQIYPRSFQDSDGDGIGDLKGITSRLGYLKEIGITATWLSPIFTSPMSDFGY 85

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           D+SN+ D+DP+FG + DF+ LI EA S G
Sbjct: 86  DISNFYDIDPIFGTLEDFDDLIVEAKSLG 114

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|O16098|MAL1_DROVI Maltase 1 OS=Drosophila virilis GN=Mal-B1 PE=3 SV=2

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 63/88 (71%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
           WW+  + YQIYPRSF+D +GDG GD++GIT KL +FVD GI ++W+ P Y +   D GYD
Sbjct: 82  WWRHEVFYQIYPRSFKDSDGDGIGDLKGITSKLQYFVDTGITAIWLSPIYKSPMVDFGYD 141

Query: 87  VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +S+Y D+ P +G + DF+ LI +A+  G
Sbjct: 142 ISDYRDIQPEYGTLEDFDALIAKANQLG 169

Drosophila virilis (taxid: 7244)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P29094|O16G_BACTR Oligo-1,6-glucosidase OS=Bacillus thermoglucosidasius GN=malL PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 65/91 (71%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           ++ WW+ A++YQIYPRSF D NGDG GD+RGI  KLD+  +LG++ +W+ P Y +   D 
Sbjct: 2   ERVWWKEAVVYQIYPRSFYDSNGDGIGDIRGIIAKLDYLKELGVDVVWLSPVYKSPNDDN 61

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD+S+Y D+   FG M D++ ++EE H RG
Sbjct: 62  GYDISDYRDIMDEFGTMADWKTMLEEMHKRG 92

Bacillus thermoglucosidasius (taxid: 1426)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|O34364|O16G2_BACSU Probable oligo-1,6-glucosidase 2 OS=Bacillus subtilis (strain 168) GN=ycdG PE=2 SV=1

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 64/91 (70%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           + +WW+ A++YQIYPRSF+D NGDG GD+RGI  +LD+  +LG + +WI P YP+   D 
Sbjct: 2   KTDWWKDAVVYQIYPRSFQDSNGDGIGDLRGIISRLDYIKELGADVIWICPIYPSPNVDY 61

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYDV+N+  +   +G M DF  L+++ H RG
Sbjct: 62  GYDVTNHKAIMDSYGTMDDFHELLDQVHQRG 92

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P21332|O16G_BACCE Oligo-1,6-glucosidase OS=Bacillus cereus GN=malL PE=1 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 63/91 (69%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           +K+WW+ +++YQIYPRSF D NGDG GD+RGI  KLD+  +LGI+ +W+ P Y +   D 
Sbjct: 2   EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDN 61

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD+S+Y  +   FG M D++ L+ E H R 
Sbjct: 62  GYDISDYCKIMNEFGTMEDWDELLHEMHERN 92

Bacillus cereus (taxid: 1396)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|P40884|IMA5_YEAST Oligo-1,6-glucosidase IMA5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMA5 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 63/89 (70%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
           +WW+ A +YQIYP SF+D N DG GD+ GIT KLD+  +LG++++W+ PFY +   D+GY
Sbjct: 8   KWWKEATVYQIYPASFKDSNNDGWGDLAGITSKLDYVKELGVDAIWVCPFYDSPQEDMGY 67

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           D++NY  V P +G   D   +IEEAH RG
Sbjct: 68  DIANYEKVWPRYGTNEDCFQMIEEAHKRG 96

Alpha-glucosidase with specificity for isomaltose, maltose, and palatinose.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
269794703	605	glycosidase [Sanguibacter keddieii DSM 1	0.661	0.148	0.622	8e-29
222147608	550	alpha-glucosidase [Agrobacterium vitis S	0.75	0.185	0.549	1e-28
405965939	608	Putative maltase H [Crassostrea gigas]	0.676	0.151	0.586	1e-28
238060720	558	alpha amylase, catalytic subdomain [Micr	0.705	0.172	0.593	3e-28
418296609	551	alpha-glucosidase [Agrobacterium tumefac	0.676	0.166	0.586	1e-27
328784980	620	PREDICTED: maltase 1 [Apis mellifera]	0.764	0.167	0.490	1e-27
408378323	551	alpha-glucosidase [Agrobacterium alberti	0.727	0.179	0.555	2e-27
430002202	551	putative alpha-glucosidase [Rhizobium sp	0.75	0.185	0.519	2e-27
420239784	551	glycosidase [Rhizobium sp. CF080] gi|398	0.75	0.185	0.529	3e-27
150395522	551	alpha amylase [Sinorhizobium medicae WSM	0.75	0.185	0.539	4e-27

>gi|269794703|ref|YP_003314158.1| glycosidase [Sanguibacter keddieii DSM 10542] gi|269096888|gb|ACZ21324.1| glycosidase [Sanguibacter keddieii DSM 10542]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 74/90 (82%)

Query: 25  KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLG 84
           +EWW+TA++YQ+YPRSF D +GDG GD+ GIT KLDHFVDLG++++W+ PFY +  AD G
Sbjct: 33  REWWRTAVIYQVYPRSFADADGDGIGDIPGITSKLDHFVDLGVDAVWLSPFYRSPQADAG 92

Query: 85  YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           YDV++Y +VDPLFG   DFE L+E AH+RG
Sbjct: 93  YDVADYREVDPLFGTNADFEALLEGAHARG 122

Source: Sanguibacter keddieii DSM 10542

Species: Sanguibacter keddieii

Genus: Sanguibacter

Family: Sanguibacteraceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|222147608|ref|YP_002548565.1| alpha-glucosidase [Agrobacterium vitis S4] gi|221734596|gb|ACM35559.1| alpha-glucosidase [Agrobacterium vitis S4]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 76/102 (74%)

Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           ++  S  V +P K+WW+ A++YQIYPRSF+D NGDG GD++GIT +L H   LG +++WI
Sbjct: 1   MTAASDSVAMPDKDWWRGAVIYQIYPRSFQDSNGDGIGDLKGITARLPHVAGLGADAIWI 60

Query: 73  QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            PF+ +   D GYDVSNYVDVDP+FG ++DF+ LI EAH  G
Sbjct: 61  SPFFTSPMKDFGYDVSNYVDVDPMFGTLNDFDALIAEAHRLG 102

Source: Agrobacterium vitis S4

Species: Agrobacterium vitis

Genus: Agrobacterium

Family: Rhizobiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|405965939|gb|EKC31277.1| Putative maltase H [Crassostrea gigas]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P+ EWW+T I+YQIYPRSF+D NGDGTGD++G+T++LD+  +LG+ +LW+ PFY +   D
Sbjct: 66  PRLEWWKTTIIYQIYPRSFQDSNGDGTGDLKGVTKRLDYLQELGVGTLWLSPFYKSPMRD 125

Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYDV NY  VDPLFG M DF++L++EA +RG
Sbjct: 126 FGYDVQNYTQVDPLFGTMDDFDVLMKEAKNRG 157

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|238060720|ref|ZP_04605429.1| alpha amylase, catalytic subdomain [Micromonospora sp. ATCC 39149] gi|237882531|gb|EEP71359.1| alpha amylase, catalytic subdomain [Micromonospora sp. ATCC 39149]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query: 19  QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA 78
           Q   P   WW  A++YQIYPRSF D NGDG GD+ GIT +LDHFV+LG++++W+ PFYP+
Sbjct: 10  QSAGPATAWWTEAVIYQIYPRSFADSNGDGIGDLPGITARLDHFVELGVDAVWLSPFYPS 69

Query: 79  GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             AD GYDV++Y DVDPLFG + D + LI EAH+RG
Sbjct: 70  PQADAGYDVADYRDVDPLFGRLPDADRLITEAHARG 105

Source: Micromonospora sp. ATCC 39149

Species: Micromonospora sp. ATCC 39149

Genus: Micromonospora

Family: Micromonosporaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|418296609|ref|ZP_12908452.1| alpha-glucosidase [Agrobacterium tumefaciens CCNWGS0286] gi|355538784|gb|EHH08026.1| alpha-glucosidase [Agrobacterium tumefaciens CCNWGS0286]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 72/92 (78%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P K+WW+ A++YQIYPRS++D NGDG GD++GIT++L H  DLG +++WI PF+ +   D
Sbjct: 11  PNKDWWRGAVIYQIYPRSYQDSNGDGIGDLKGITDRLAHIADLGADAIWISPFFTSPMKD 70

Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYDVSNYVDVDP+FG + DF+ LI EAH  G
Sbjct: 71  FGYDVSNYVDVDPMFGTLADFDGLIAEAHRLG 102

Source: Agrobacterium tumefaciens CCNWGS0286

Species: Agrobacterium tumefaciens

Genus: Agrobacterium

Family: Rhizobiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|328784980|ref|XP_624736.2| PREDICTED: maltase 1 [Apis mellifera]

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 78/104 (75%)

Query: 10  LGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIES 69
           LG + + S   +L  K+WW+TA++YQI+PR F+D +G+G GD++GI  +LD+  DLGI++
Sbjct: 12  LGIILMGSSNSKLVDKQWWETALIYQIWPRGFQDSDGNGEGDLKGIINRLDYLKDLGIDA 71

Query: 70  LWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +W+ P Y +   D GYD+SNY D++PLFG++ DF+ LI EAH+R
Sbjct: 72  IWLNPIYSSPLIDSGYDISNYTDINPLFGNLQDFDELIREAHNR 115

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|408378323|ref|ZP_11175920.1| alpha-glucosidase [Agrobacterium albertimagni AOL15] gi|407747460|gb|EKF58979.1| alpha-glucosidase [Agrobacterium albertimagni AOL15]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 74/99 (74%)

Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           +S  +  V  P K+WW+ A++YQIYPRS++D NGDG GD++GIT +L H  DLG +++WI
Sbjct: 1   MSADANPVMTPDKDWWRGAVIYQIYPRSYQDSNGDGIGDLKGITARLAHIADLGADAIWI 60

Query: 73  QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111
            PF+ +   D GYDVSNYVDVDP+FG + DF+ LI EAH
Sbjct: 61  SPFFTSPMKDFGYDVSNYVDVDPMFGSLTDFDGLIAEAH 99

Source: Agrobacterium albertimagni AOL15

Species: Agrobacterium albertimagni

Genus: Agrobacterium

Family: Rhizobiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|430002202|emb|CCF17983.1| putative alpha-glucosidase [Rhizobium sp.]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 75/102 (73%)

Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           +++++     P K+WW+ A++YQIYPRSF+D NGDG GD++GIT +L H   LG +++WI
Sbjct: 1   MTILAGTPAAPDKDWWRGAVIYQIYPRSFQDSNGDGIGDLKGITARLPHVSALGADAIWI 60

Query: 73  QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            PF+P+   D GYDVSNY +VDP+FG + DF+ LI EAH  G
Sbjct: 61  SPFFPSPMRDFGYDVSNYTEVDPMFGTLSDFDALIAEAHRLG 102

Source: Rhizobium sp.

Species: Rhizobium sp.

Genus: Rhizobium

Family: Rhizobiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|420239784|ref|ZP_14744072.1| glycosidase [Rhizobium sp. CF080] gi|398078651|gb|EJL69543.1| glycosidase [Rhizobium sp. CF080]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 74/102 (72%)

Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           +S+ +     P K+WW+ A++YQIYPRS++D NGDG GD++GIT +L H   LG +++WI
Sbjct: 1   MSVSAEAPAAPDKDWWRGAVIYQIYPRSYQDSNGDGIGDLKGITARLPHVAALGADAIWI 60

Query: 73  QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            PF+P+   D GYDVSNY DVDP+FG + DF+ LI EAH  G
Sbjct: 61  SPFFPSPMRDFGYDVSNYTDVDPMFGSLSDFDGLISEAHRLG 102

Source: Rhizobium sp. CF080

Species: Rhizobium sp. CF080

Genus: Rhizobium

Family: Rhizobiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|150395522|ref|YP_001325989.1| alpha amylase [Sinorhizobium medicae WSM419] gi|150027037|gb|ABR59154.1| alpha amylase catalytic region [Sinorhizobium medicae WSM419]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 74/102 (72%)

Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           LS  +  +  P ++WW+ A++YQIYPRSF+D NGDG GD++GIT +L H   LG +++WI
Sbjct: 3   LSETTSSLLEPDRDWWRGAVIYQIYPRSFQDTNGDGIGDLQGITARLPHIAGLGADAIWI 62

Query: 73  QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            PF+ +   D GYDVSNYVDVDP+FG + DF+ LI EAH  G
Sbjct: 63  SPFFTSPMKDFGYDVSNYVDVDPIFGALDDFDALIAEAHRLG 104

Source: Sinorhizobium medicae WSM419

Species: Sinorhizobium medicae

Genus: Sinorhizobium

Family: Rhizobiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TIGR_CMR|SO_2213	540	SO_2213 "oligo-1,6-glucosidase	0.647	0.162	0.568	1e-26
ZFIN|ZDB-GENE-090313-225	674	slc3a1 "solute carrier family	0.772	0.155	0.485	7e-25
UNIPROTKB|Q4J6B8	391	SLC3A1 "Neutral and basic amin	0.654	0.227	0.494	2.3e-24
UNIPROTKB|E1C011	689	SLC3A1 "Uncharacterized protei	0.654	0.129	0.505	2.7e-24
FB|FBgn0033297	588	Mal-A8 "Maltase A8" [Drosophil	0.808	0.187	0.447	4.6e-24
FB|FBgn0032381	584	Mal-B1 "Maltase B1" [Drosophil	0.794	0.184	0.458	7.5e-24
FB|FBgn0002569	567	Mal-A2 "Maltase A2" [Drosophil	0.772	0.185	0.462	1.5e-23
UNIPROTKB|P28904	551	treC [Escherichia coli K-12 (t	0.647	0.159	0.488	1.7e-23
TIGR_CMR|BA_0371	554	BA_0371 "glycosyl hydrolase fa	0.654	0.160	0.539	1.7e-23
TIGR_CMR|CPS_0984	538	CPS_0984 "alpha amylase family	0.647	0.163	0.5	2.6e-23

TIGR_CMR|SO_2213 SO_2213 "oligo-1,6-glucosidase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 306 (112.8 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 50/88 (56%), Positives = 67/88 (76%)

Query:    27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
             WW+ A++YQIYPRS  D NGDG GD+RGI  KLD+   L ++++WI PF+ +  AD GYD
Sbjct:     6 WWRGAVIYQIYPRSLLDTNGDGVGDLRGIITKLDYIASLNVDAIWISPFFKSPMADFGYD 65

Query:    87 VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             +S+Y ++DPLFG M DF+ LIE+AH RG
Sbjct:    66 ISDYREIDPLFGSMQDFDELIEKAHQRG 93

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

ZFIN|ZDB-GENE-090313-225 slc3a1 "solute carrier family 3, member 1" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 7.0e-25, P = 7.0e-25
 Identities = 52/107 (48%), Positives = 71/107 (66%)

Query:    10 LGFLSLVSCQVELPQK--EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGI 67
             L  +++ +  V L  +   WWQ + +YQ+YPRSF+D N DG GD+RGI EKL HF  L I
Sbjct:    88 LALIAMTAAIVALSPRCMSWWQLSPIYQVYPRSFKDSNADGVGDLRGIKEKLSHFEYLNI 147

Query:    68 ESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             +++WI PFY +   D GYDV ++ DVDPLFG M DF+ L+   H +G
Sbjct:   148 KAIWISPFYKSPMRDFGYDVEDFRDVDPLFGTMEDFDDLLTSMHDKG 194

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

UNIPROTKB|Q4J6B8 SLC3A1 "Neutral and basic amino acid transport protein rBAT" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
 Identities = 44/89 (49%), Positives = 60/89 (67%)

Query:    26 EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
             +WWQ   MYQIYPRSF+D N DG GD++GI +KLD+   L I+++WI  FY +   D  Y
Sbjct:   116 DWWQEGPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRY 175

Query:    86 DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
              V ++ +VDP+FG M DFE L+   H +G
Sbjct:   176 GVEDFREVDPIFGTMEDFENLVAAIHDKG 204

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

UNIPROTKB|E1C011 SLC3A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
 Identities = 45/89 (50%), Positives = 60/89 (67%)

Query:    26 EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
             +WWQ   +YQ+YPRSF+D N DG GD++GI EKLDH   L I+++WI  FY +   D GY
Sbjct:   115 DWWQDGPIYQVYPRSFKDSNMDGNGDLKGIQEKLDHITHLNIKTIWITSFYKSPLKDAGY 174

Query:    86 DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
                ++ D+DP+FG M DFE L+   H RG
Sbjct:   175 GAEDFYDIDPMFGSMRDFEDLLASIHDRG 203

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

FB|FBgn0033297 Mal-A8 "Maltase A8" [Drosophila melanogaster (taxid:7227)]

 Score = 283 (104.7 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 51/114 (44%), Positives = 73/114 (64%)

Query:     1 MLSRIFLAFLGFLSLVSCQVELPQ----KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGIT 56
             +LS + L  L   S  +CQV+       K+WWQTA  YQIYPRSF+D +GDG GD+ GIT
Sbjct:     3 LLSLLTLLLLAIASNEACQVQSSSSETTKDWWQTAQFYQIYPRSFKDSDGDGIGDLNGIT 62

Query:    57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA 110
              KL++  DLG+ + W+ P + +   D GYD+S++ D+ P +G + DF  LI+ A
Sbjct:    63 SKLEYLKDLGVTAAWLSPIFKSPMVDFGYDISDFFDIQPEYGTLEDFRTLIKRA 116

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

FB|FBgn0032381 Mal-B1 "Maltase B1" [Drosophila melanogaster (taxid:7227)]

 Score = 281 (104.0 bits), Expect = 7.5e-24, P = 7.5e-24
 Identities = 50/109 (45%), Positives = 70/109 (64%)

Query:     7 LAFLGFLSLVSCQVELPQK-EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDL 65
             +  +G L+      EL  K  WWQ  + YQIYPRSF+D NGDG GD++GIT +L +F D 
Sbjct:    12 VGLVGILAHKHQSKELDAKYNWWQHEVFYQIYPRSFQDSNGDGIGDLQGITSRLQYFKDT 71

Query:    66 GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             GI S+W+ P Y +   D GYD+SNY ++ P +G + DF+ LI +A+  G
Sbjct:    72 GITSVWLSPIYESPMVDFGYDISNYTNIQPEYGTLEDFDALIAKANELG 120

GO:0004558 "alpha-glucosidase activity" evidence=ISS

GO:0043169 "cation binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

FB|FBgn0002569 Mal-A2 "Maltase A2" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 49/106 (46%), Positives = 72/106 (67%)

Query:    10 LGFLSLVSCQVE-LPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIE 68
             L  L L+S   E     +WW+ A +YQIYPRSF+D +GDG GD++GIT +L +  ++GI 
Sbjct:     9 LAALLLISTTQEGTADIDWWENASLYQIYPRSFQDSDGDGIGDLKGITSRLGYLKEIGIT 68

Query:    69 SLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             + W+ P + +  +D GYD+SN+ D+DP+FG + DF+ LI EA S G
Sbjct:    69 ATWLSPIFTSPMSDFGYDISNFYDIDPIFGTLEDFDDLIVEAKSLG 114

GO:0004558 "alpha-glucosidase activity" evidence=NAS

GO:0006006 "glucose metabolic process" evidence=NAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|P28904 treC [Escherichia coli K-12 (taxid:83333)]

 Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 43/88 (48%), Positives = 64/88 (72%)

Query:    27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
             WWQ  ++YQIYP+SF+D  G GTGD+RG+ + LD+   LG++++W+ PFY +   D GYD
Sbjct:     7 WWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQHLDYLHKLGVDAIWLTPFYVSPQVDNGYD 66

Query:    87 VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             V+NY  +DP +G + DF+ L+ +A SRG
Sbjct:    67 VANYTAIDPTYGTLDDFDELVTQAKSRG 94

GO:0006974 "response to DNA damage stimulus" evidence=IEP

GO:0043169 "cation binding" evidence=IEA

GO:0005993 "trehalose catabolic process" evidence=IEA;IMP

GO:0008788 "alpha,alpha-phosphotrehalase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|BA_0371 BA_0371 "glycosyl hydrolase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 48/89 (53%), Positives = 62/89 (69%)

Query:    25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLG 84
             K WW+ A+ YQIYPRSF D NGDG GD++GI  KLD+  DLGI+ +WI P Y +   D G
Sbjct:     3 KTWWKEAVAYQIYPRSFMDSNGDGIGDLQGIIAKLDYLKDLGIDVIWICPMYKSPNDDNG 62

Query:    85 YDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
             YD+S+Y D+   FG M DF+ L++E H R
Sbjct:    63 YDISDYQDIMDEFGTMEDFDALLDEVHKR 91

GO:0009313 "oligosaccharide catabolic process" evidence=ISS

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS

TIGR_CMR|CPS_0984 CPS_0984 "alpha amylase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 275 (101.9 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 44/88 (50%), Positives = 65/88 (73%)

Query:    27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
             WW+ A++YQIYPRSF D N DG GD+ GI  KLD+   LG++++WI PF+ +   D GYD
Sbjct:     2 WWRGAVIYQIYPRSFYDANQDGIGDLPGIISKLDYIASLGVDAIWISPFFKSPMKDFGYD 61

Query:    87 VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             +S+Y ++DP+FG + DF+ L+ +AH+ G
Sbjct:    62 ISDYREIDPIFGTLADFDELVIKAHALG 89

GO:0004556 "alpha-amylase activity" evidence=ISS

GO:0016052 "carbohydrate catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40884	IMA5_YEAST	3, ., 2, ., 1, ., 1, 0	0.5056	0.6544	0.1531	yes	N/A
Q9Z3R8	AGLA_RHIME	3, ., 2, ., 1, ., 2, 0	0.5760	0.6764	0.1669	yes	N/A
Q45101	O16G_BACCO	3, ., 2, ., 1, ., 1, 0	0.5280	0.6544	0.1603	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
cd11328	470	cd11328, AmyAc_maltase, Alpha amylase catalytic do	1e-47
cd11330	472	cd11330, AmyAc_OligoGlu, Alpha amylase catalytic d	8e-46
cd11331	450	cd11331, AmyAc_OligoGlu_like, Alpha amylase cataly	2e-44
cd11332	481	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalyti	1e-43
cd11359	456	cd11359, AmyAc_SLC3A1, Alpha amylase catalytic dom	9e-43
cd11333	428	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase ca	2e-42
TIGR02403	543	TIGR02403, trehalose_treC, alpha,alpha-phosphotreh	2e-38
cd11334	447	cd11334, AmyAc_TreS, Alpha amylase catalytic domai	2e-36
PRK10933	551	PRK10933, PRK10933, trehalose-6-phosphate hydrolas	4e-34
cd11316	403	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic	9e-32
cd11348	429	cd11348, AmyAc_2, Alpha amylase catalytic domain f	1e-28
TIGR02456	539	TIGR02456, treS_nterm, trehalose synthase	1e-27
COG0366	505	COG0366, AmyA, Glycosidases [Carbohydrate transpor	2e-27
smart00642	166	smart00642, Aamy, Alpha-amylase domain	1e-26
pfam00128	314	pfam00128, Alpha-amylase, Alpha amylase, catalytic	1e-22
cd00551	260	cd00551, AmyAc_family, Alpha amylase catalytic dom	8e-21
cd11313	336	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase cataly	5e-19
cd11338	389	cd11338, AmyAc_CMD, Alpha amylase catalytic domain	2e-18
cd11324	536	cd11324, AmyAc_Amylosucrase, Alpha amylase catalyt	6e-12
cd11340	407	cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catal	4e-11
cd11320	389	cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase	8e-11
cd11345	326	cd11345, AmyAc_SLC3A2, Alpha amylase catalytic dom	9e-11
cd11339	344	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catal	5e-10
cd11352	443	cd11352, AmyAc_5, Alpha amylase catalytic domain f	6e-10
cd11350	390	cd11350, AmyAc_4, Alpha amylase catalytic domain f	4e-09
cd11354	357	cd11354, AmyAc_bac_CMD_like, Alpha amylase catalyt	3e-08
PRK09505	683	PRK09505, malS, alpha-amylase; Reviewed	3e-08
COG3280	889	COG3280, TreY, Maltooligosyl trehalose synthase [C	1e-07
cd11337	328	cd11337, AmyAc_CMD_like, Alpha amylase catalytic d	5e-07
cd11325	436	cd11325, AmyAc_GTHase, Alpha amylase catalytic dom	2e-06
PRK10785	598	PRK10785, PRK10785, maltodextrin glucosidase; Prov	2e-06
cd11319	375	cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic d	1e-05
COG0296	628	COG0296, GlgB, 1,4-alpha-glucan branching enzyme [	1e-05
PRK14511	879	PRK14511, PRK14511, maltooligosyl trehalose syntha	2e-05
cd11353	366	cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase cat	2e-05
TIGR02401	825	TIGR02401, trehalose_TreY, malto-oligosyltrehalose	3e-05
PRK09441	479	PRK09441, PRK09441, cytoplasmic alpha-amylase; Rev	6e-05
TIGR02402	544	TIGR02402, trehalose_TreZ, malto-oligosyltrehalose	1e-04
PRK14510	1221	PRK14510, PRK14510, putative bifunctional 4-alpha-	8e-04
cd11336	660	cd11336, AmyAc_MTSase, Alpha amylase catalytic dom	8e-04
cd11349	456	cd11349, AmyAc_3, Alpha amylase catalytic domain f	0.001
TIGR03852	470	TIGR03852, sucrose_gtfA, sucrose phosphorylase	0.002
cd11355	433	cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylas	0.002

>gnl|CDD|200467 cd11328, AmyAc_maltase, Alpha amylase catalytic domain found in maltase (also known as alpha glucosidase) and related proteins

 Score =  158 bits (403), Expect = 1e-47
 Identities = 50/90 (55%), Positives = 70/90 (77%)

Query: 25  KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLG 84
           K+WW+ A+ YQIYPRSF+D +GDG GD++GITEKLD+F D+GI+++W+ P + +   D G
Sbjct: 2   KDWWENAVFYQIYPRSFKDSDGDGIGDLKGITEKLDYFKDIGIDAIWLSPIFKSPMVDFG 61

Query: 85  YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           YD+S++ D+DP+FG M DFE LI EA   G
Sbjct: 62  YDISDFTDIDPIFGTMEDFEELIAEAKKLG 91

Maltase (EC 3.2.1.20) hydrolyzes the terminal, non-reducing (1->4)-linked alpha-D-glucose residues in maltose, releasing alpha-D-glucose. In most cases, maltase is equivalent to alpha-glucosidase, but the term "maltase" emphasizes the disaccharide nature of the substrate from which glucose is cleaved, and the term "alpha-glucosidase" emphasizes the bond, whether the substrate is a disaccharide or polysaccharide. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 470

>gnl|CDD|200469 cd11330, AmyAc_OligoGlu, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins

 Score =  154 bits (391), Expect = 8e-46
 Identities = 49/89 (55%), Positives = 66/89 (74%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
            WW+ A++YQIYPRSF D NGDG GD+ GITEKLD+   LG++++W+ PF+ +   D GY
Sbjct: 1   PWWRGAVIYQIYPRSFLDSNGDGIGDLPGITEKLDYIASLGVDAIWLSPFFKSPMKDFGY 60

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           DVS+Y  VDPLFG + DF+ L+  AH+ G
Sbjct: 61  DVSDYCAVDPLFGTLDDFDRLVARAHALG 89

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 472

>gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase) and related proteins

 Score =  150 bits (380), Expect = 2e-44
 Identities = 52/89 (58%), Positives = 70/89 (78%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
            WWQT ++YQIYPRSF+D NGDG GD+RGI  +LD+  DLG++++W+ P YP+  AD GY
Sbjct: 1   LWWQTGVIYQIYPRSFQDSNGDGVGDLRGIISRLDYLSDLGVDAVWLSPIYPSPMADFGY 60

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           DVS+Y  +DPLFG + DF+ L+ EAH+RG
Sbjct: 61  DVSDYCGIDPLFGTLEDFDRLVAEAHARG 89

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomalto-oligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 450

>gnl|CDD|200471 cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins

 Score =  148 bits (376), Expect = 1e-43
 Identities = 47/89 (52%), Positives = 65/89 (73%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
            WW+ A++YQ+YPRSF D NGDG GD+ GI  +L +   LG++++W+ PFYP+  AD GY
Sbjct: 1   PWWRDAVVYQVYPRSFADANGDGIGDLAGIRARLPYLAALGVDAIWLSPFYPSPMADGGY 60

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           DV++Y DVDPLFG + DF+ L+  AH  G
Sbjct: 61  DVADYRDVDPLFGTLADFDALVAAAHELG 89

Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 481

>gnl|CDD|200494 cd11359, AmyAc_SLC3A1, Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins

 Score =  145 bits (369), Expect = 9e-43
 Identities = 49/88 (55%), Positives = 67/88 (76%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
           WWQT+++YQIYPRSF+D NGDG GD++GI EKLD+   LG++++W+ P Y +   D GYD
Sbjct: 2   WWQTSVIYQIYPRSFKDSNGDGNGDLKGIREKLDYLKYLGVKTVWLSPIYKSPMKDFGYD 61

Query: 87  VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           VS++ D+DP+FG M DFE L+   H RG
Sbjct: 62  VSDFTDIDPMFGTMEDFERLLAAMHDRG 89

SLC3A1, also called Neutral and basic amino acid transport protein rBAT or NBAT, plays a role in amino acid and cystine absorption. Mutations in the gene encoding SLC3A1 causes cystinuria, an autosomal recessive disorder characterized by the failure of proximal tubules to reabsorb filtered cystine and dibasic amino acids. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456

>gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins

 Score =  144 bits (366), Expect = 2e-42
 Identities = 48/86 (55%), Positives = 65/86 (75%)

Query: 29  QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVS 88
           + A++YQIYPRSF+D NGDG GD+ GI  KLD+  DLG++++W+ P YP+   D GYD+S
Sbjct: 1   KEAVVYQIYPRSFKDSNGDGIGDLPGIISKLDYLKDLGVDAIWLSPIYPSPQVDNGYDIS 60

Query: 89  NYVDVDPLFGDMHDFEILIEEAHSRG 114
           +Y  +DP FG M DF+ LI+EAH RG
Sbjct: 61  DYRAIDPEFGTMEDFDELIKEAHKRG 86

The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 428

>gnl|CDD|233851 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase

 Score =  135 bits (342), Expect = 2e-38
 Identities = 49/88 (55%), Positives = 63/88 (71%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
           WWQ  ++YQIYP+SF D  GDGTGD+RGI EKLD+   LG++ +W+ PFY +   D GYD
Sbjct: 1   WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYD 60

Query: 87  VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           VS+Y  ++PLFG M DFE L+ EA  R 
Sbjct: 61  VSDYYAINPLFGTMADFEELVSEAKKRN 88

Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor. Length = 543

>gnl|CDD|200473 cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase

 Score =  128 bits (325), Expect = 2e-36
 Identities = 43/88 (48%), Positives = 61/88 (69%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
           W++ A++YQ+  R+F D NGDG GD RG+TEKLD+   LG+ ++W+ PFYP+   D GYD
Sbjct: 1   WYKNAVIYQLDVRTFMDSNGDGIGDFRGLTEKLDYLQWLGVTAIWLLPFYPSPLRDDGYD 60

Query: 87  VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +++Y  VDP  G + DF   + EAH RG
Sbjct: 61  IADYYGVDPRLGTLGDFVEFLREAHERG 88

Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 447

>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional

 Score =  123 bits (311), Expect = 4e-34
 Identities = 44/88 (50%), Positives = 66/88 (75%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
           WWQ  ++YQIYP+SF+D  G GTGD+RG+T++LD+   LG++++W+ PFY +   D GYD
Sbjct: 7   WWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYD 66

Query: 87  VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           V+NY  +DP +G + DF+ L+ +A SRG
Sbjct: 67  VANYTAIDPTYGTLDDFDELVAQAKSRG 94

Length = 551

>gnl|CDD|200455 cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score =  115 bits (291), Expect = 9e-32
 Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%)

Query: 31  AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNY 90
            + Y+I+ RSF D +GDG GD+ G+TEKLD+  DLG+  +W+ P +P+  +  GYDV++Y
Sbjct: 1   GVFYEIFVRSFYDSDGDGIGDLNGLTEKLDYLNDLGVNGIWLMPIFPS-PSYHGYDVTDY 59

Query: 91  VDVDPLFGDMHDFEILIEEAHSRG 114
             ++P +G M DFE LI EAH RG
Sbjct: 60  YAIEPDYGTMEDFERLIAEAHKRG 83

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 403

>gnl|CDD|200486 cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score =  107 bits (269), Expect = 1e-28
 Identities = 38/83 (45%), Positives = 52/83 (62%)

Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
           + Y+IYP+SF D NGDG GD++GI  KLD+   LG  ++W+ P + +   D GYDV +Y 
Sbjct: 1   VFYEIYPQSFYDSNGDGIGDLQGIISKLDYIKSLGCNAIWLNPCFDSPFKDAGYDVRDYY 60

Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
            V P +G   D   L +EAH RG
Sbjct: 61  KVAPRYGTNEDLVRLFDEAHKRG 83

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The catalytic triad (DED) is not present here. The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 429

>gnl|CDD|233874 TIGR02456, treS_nterm, trehalose synthase

 Score =  105 bits (264), Expect = 1e-27
 Identities = 41/89 (46%), Positives = 62/89 (69%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
            W++ A+ Y+++ RSF D NGDG GD  G+T KLD+   LG+++LW+ PF+ +   D GY
Sbjct: 1   LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGY 60

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           DVS+Y  + P FG + DF+  ++EAH+RG
Sbjct: 61  DVSDYRAILPEFGTIDDFKDFVDEAHARG 89

Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PMID:15378530) [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 539

>gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and metabolism]

 Score =  105 bits (263), Expect = 2e-27
 Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 6/90 (6%)

Query: 31  AIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLG 84
           A++YQIYP  F D NG      DG GD++GITEKLD+  +LG++++W+ P + +  AD G
Sbjct: 1   AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHG 60

Query: 85  YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           YDVS+Y  VDP FG   DF+ L+EEAH RG
Sbjct: 61  YDVSDYTKVDPHFGTEEDFKELVEEAHKRG 90

Length = 505

>gnl|CDD|214758 smart00642, Aamy, Alpha-amylase domain

 Score = 97.4 bits (243), Expect = 1e-26
 Identities = 40/83 (48%), Positives = 57/83 (68%), Gaps = 3/83 (3%)

Query: 35  QIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA---GGADLGYDVSNYV 91
           QIYP  F D NGDG GD++GI EKLD+  DLG+ ++W+ P + +     +  GYD+S+Y 
Sbjct: 1   QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYK 60

Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
            +DP FG M DF+ L++ AH+RG
Sbjct: 61  QIDPRFGTMEDFKELVDAAHARG 83

Length = 166

>gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain

 Score = 90.0 bits (224), Expect = 1e-22
 Identities = 29/65 (44%), Positives = 47/65 (72%)

Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
           GD++GI +KLD+  DLG+ ++W+ P + +  +  GYD+++Y  +DP FG M DF+ LI++
Sbjct: 1   GDLQGIIDKLDYLKDLGVTAIWLSPIFDSPQSYHGYDITDYYKIDPHFGTMDDFKELIDK 60

Query: 110 AHSRG 114
           AH RG
Sbjct: 61  AHERG 65

Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 314

>gnl|CDD|200451 cd00551, AmyAc_family, Alpha amylase catalytic domain family

 Score = 84.5 bits (209), Expect = 8e-21
 Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 32  IMYQIYPRSFRDVN---GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVS 88
           ++YQ++P  F D +   GDG GD++GI +KLD+  DLG+ ++W+ P + +   D      
Sbjct: 1   VIYQLFPDRFTDGDSSGGDGGGDLKGIIDKLDYLKDLGVTAIWLTPIFESPEYDGYDKDD 60

Query: 89  NYVD---VDPLFGDMHDFEILIEEAHSRG 114
            Y+D   +DP  G   DF+ L++ AH RG
Sbjct: 61  GYLDYYEIDPRLGTEEDFKELVKAAHKRG 89

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; and C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost this catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 260

>gnl|CDD|200452 cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score = 80.7 bits (200), Expect = 5e-19
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA------GG 80
           W + A++Y++  R F        G  + +T+ L    DLG++ LW+ P +P       G 
Sbjct: 1   WLRDAVIYEVNVRQFTP-----EGTFKAVTKDLPRLKDLGVDILWLMPIHPIGEKNRKGS 55

Query: 81  ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
               Y V +Y  V+P +G + DF+ L++EAH RG
Sbjct: 56  LGSPYAVKDYRAVNPEYGTLEDFKALVDEAHDRG 89

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 336

>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins

 Score = 79.1 bits (196), Expect = 2e-18
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 37/118 (31%)

Query: 31  AIMYQIYPRSFRDVNGDGT----------------------------------GDMRGIT 56
           A+ YQI+P  F   NGD +                                  GD++GI 
Sbjct: 2   AVFYQIFPDRFA--NGDPSNDPKGGEYNYFGWPDLPDYPPPWGGEPTRRDFYGGDLQGII 59

Query: 57  EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           EKLD+  DLG+ ++++ P + A  ++  YD ++Y  +DP  G   DF+ L+EEAH RG
Sbjct: 60  EKLDYLKDLGVNAIYLNPIFEAP-SNHKYDTADYFKIDPHLGTEEDFKELVEEAHKRG 116

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389

>gnl|CDD|200463 cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase

 Score = 61.0 bits (149), Expect = 6e-12
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107
           GD++G+ EK+ +  +LG+  L + P    P G  D GY VS+Y +VDP  G M D   L 
Sbjct: 83  GDLKGLAEKIPYLKELGVTYLHLMPLLKPPEGDNDGGYAVSDYREVDPRLGTMEDLRALA 142

Query: 108 EEAHSRG 114
            E   RG
Sbjct: 143 AELRERG 149

Amylosucrase is a glucosyltransferase that catalyzes the transfer of a D-glucopyranosyl moiety from sucrose onto an acceptor molecule. When the acceptor is another saccharide, only alpha-1,4 linkages are produced. Unlike most amylopolysaccharide synthases, it does not require any alpha-D-glucosyl nucleoside diphosphate substrate. In the presence of glycogen it catalyzes the transfer of a D-glucose moiety onto a glycogen branch, but in its absence, it hydrolyzes sucrose and synthesizes polymers, smaller maltosaccharides, and sucrose isoforms. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 536

>gnl|CDD|200479 cd11340, AmyAc_bac_CMD_like_3, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFYP---AGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
           GD++GI + LD+  DLG+ ++W+ P         +  GY  +++  +DP FG   D++ L
Sbjct: 42  GDIQGIIDHLDYLQDLGVTAIWLTPLLENDMPSYSYHGYAATDFYRIDPRFGSNEDYKEL 101

Query: 107 IEEAHSRG 114
           + +AH+RG
Sbjct: 102 VSKAHARG 109

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 407

>gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain found in maltogenic amylases, cyclodextrin glycosyltransferase, and related proteins

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFY-------PAGG--ADLGYDVSNYVDVDPLFGDM 100
           GD +GI +KL +  DLG+ ++WI P           GG     GY   ++   +  FG  
Sbjct: 44  GDWQGIIDKLPYLKDLGVTAIWISPPVENINSPIEGGGNTGYHGYWARDFKRTNEHFGTW 103

Query: 101 HDFEILIEEAHSRG 114
            DF+ L++ AH+ G
Sbjct: 104 EDFDELVDAAHANG 117

Enzymes such as amylases, cyclomaltodextrinase (CDase), and cyclodextrin glycosyltransferase (CGTase) degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs), consisting of six, seven, or eight glucose residues, respectively. CGTases are characterized depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The maltogenic alpha-amylase from Bacillus is a five-domain structure, unlike most alpha-amylases, but similar to that of cyclodextrin glycosyltransferase. In addition to the A, B, and C domains, they have a domain D and a starch-binding domain E. Maltogenic amylase is an endo-acting amylase that has activity on cyclodextrins, terminally modified linear maltodextrins, and amylose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 389

>gnl|CDD|200483 cd11345, AmyAc_SLC3A2, Alpha amylase catalytic domain found in solute carrier family 3 member 2 proteins

 Score = 57.4 bits (139), Expect = 9e-11
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 21  ELPQKEWWQTAIMYQIY-PRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG 79
            +P+  WW    +YQI   ++F        G ++G+  KLD+   L ++ L + P +   
Sbjct: 6   PIPEMNWWNEGPLYQIGDLQAFS-----EAGGLKGVEGKLDYLSQLKVKGLVLGPIHVVQ 60

Query: 80  GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
               G    N  ++DP  G + DF  L+  AH +G
Sbjct: 61  ADQPG--ELNLTEIDPDLGTLEDFTSLLTAAHKKG 93

4F2 cell-surface antigen heavy chain (hc) is a protein that in humans is encoded by the SLC3A2 gene. 4F2hc is a multifunctional type II membrane glycoprotein involved in amino acid transport and cell fusion, adhesion, and transformation. It is related to bacterial alpha-glycosidases, but lacks alpha-glycosidase activity. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 326

>gnl|CDD|200478 cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 55.3 bits (134), Expect = 5e-10
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 50  GDMRGITEKLDHFVDLGIESLWI-----QPFYPAGGADL-GYDVSNYVDVDPLFGDMHDF 103
           GD +G+ +KLD+  DLG  ++WI          AG A   GY   ++  +DP  G   D 
Sbjct: 42  GDFKGLIDKLDYIKDLGFTAIWITPVVKNRSVQAGSAGYHGYWGYDFYRIDPHLGTDADL 101

Query: 104 EILIEEAHSRG 114
           + LI+ AH+RG
Sbjct: 102 QDLIDAAHARG 112

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 344

>gnl|CDD|200489 cd11352, AmyAc_5, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFY---PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
           G ++G+  KL +   LG+ +LW+ P +   P      GY + N++DVDP FG   D   L
Sbjct: 47  GTLKGVRSKLGYLKRLGVTALWLSPVFKQRPELETYHGYGIQNFLDVDPRFGTREDLRDL 106

Query: 107 IEEAHSRG 114
           ++ AH+RG
Sbjct: 107 VDAAHARG 114

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 443

>gnl|CDD|200488 cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 19  QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLWIQPF 75
             ELP KE     ++Y++  R F        GD +G+ +KLD+  DLG   IE + +Q F
Sbjct: 7   DFELPAKE---DLVIYELLVRDF-----TERGDFKGVIDKLDYLQDLGVNAIELMPVQEF 58

Query: 76  YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
              G    GY+  +Y  +D  +G   D + L++E H RG
Sbjct: 59  --PGNDSWGYNPRHYFALDKAYGTPEDLKRLVDECHQRG 95

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 390

>gnl|CDD|200491 cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 31  AIMYQIYPRSF-------RDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           AI + +YP  F       R+        +  +   LD+ V+LG   L + P + +  A  
Sbjct: 2   AIWWHVYPLGFVGAPIRPREPEAAVEHRLDRLEPWLDYAVELGCNGLLLGPVFES--ASH 59

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD  ++  +DP  GD  DF+ LI  AH RG
Sbjct: 60  GYDTLDHYRIDPRLGDDEDFDALIAAAHERG 90

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 357

>gnl|CDD|236543 PRK09505, malS, alpha-amylase; Reviewed

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 46/143 (32%)

Query: 11  GFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGD-----------------GT---G 50
           G L L   + E      W  A +Y +    F   NGD                 GT   G
Sbjct: 170 GLLLLERAETEAAAPFDWHNATVYFVLTDRF--ENGDPSNDHSYGRHKDGMQEIGTFHGG 227

Query: 51  DMRGITEKLDHFVDLGIESLWIQ------------------PFYP-AGGADLGYDVSNYV 91
           D+RG+TEKLD+   LG+ +LWI                   P Y   G   L     ++ 
Sbjct: 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTL-----DWT 282

Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
            +D   G   D   L++EAH RG
Sbjct: 283 KLDANMGTEADLRTLVDEAHQRG 305

Length = 683

>gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 57  EKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             LD+  DLGI  L++ P + A  G+  GYDV +  +++P  G     E L+    SRG
Sbjct: 23  ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRG 81

Length = 889

>gnl|CDD|200476 cd11337, AmyAc_CMD_like, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 32  IMYQIYPRSF------RDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
           I Y IYP  F       D +G     +  + + L H  +LG  +L++ P + +     GY
Sbjct: 1   IFYHIYPLGFCGAPIRNDFDGPPEHRLLKLEDWLPHLKELGCNALYLGPVFESDSH--GY 58

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           D  +Y  +D   G   DF+ L+   H RG
Sbjct: 59  DTRDYYRIDRRLGTNEDFKALVAALHERG 87

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 328

>gnl|CDD|200464 cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase)

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 20/110 (18%)

Query: 18  CQVELPQKEWWQTA----------IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG- 66
             V  P   WW  A          ++Y+++  +F     +GT       E+LD+  DLG 
Sbjct: 15  SVVVDPSAFWWTDAGWRGPPLEELVIYELHVGTF---TPEGT--FDAAIERLDYLADLGV 69

Query: 67  --IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             IE + +  F   G  + GYD       +  +G   D + L++ AH RG
Sbjct: 70  TAIELMPVAEF--PGERNWGYDGVLPFAPESSYGGPDDLKRLVDAAHRRG 117

Glycosyltrehalose trehalohydrolase (GTHase) was discovered as part of a coupled system for the production of trehalose from soluble starch. In the first half of the reaction, glycosyltrehalose synthase (GTSase), an intramolecular glycosyl transferase, converts the glycosidic bond between the last two glucose residues of amylose from an alpha-1,4 bond to an alpha-1,1 bond, making a non-reducing glycosyl trehaloside. In the second half of the reaction, GTHase cleaves the alpha-1,4 glycosidic bond adjacent to the trehalose moiety to release trehalose and malto-oligosaccharide. Like isoamylase and other glycosidases that recognize branched oligosaccharides, GTHase contains an N-terminal extension and does not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Glycosyltrehalose Trehalohydrolase Maltooligosyltrehalose Trehalohydrolase. Length = 436

>gnl|CDD|236759 PRK10785, PRK10785, maltodextrin glucosidase; Provisional

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 36/124 (29%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT-----------------------------------G 50
           +W    + YQI+P  F                                           G
Sbjct: 117 QWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGG 176

Query: 51  DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA 110
           D+ GI+EKL +   LG+ +L++ P + A  +   YD  +Y  VDP  G       L    
Sbjct: 177 DLDGISEKLPYLKKLGVTALYLNPIFTA-PSVHKYDTEDYRHVDPQLGGDAALLRLRHAT 235

Query: 111 HSRG 114
             RG
Sbjct: 236 QQRG 239

Length = 598

>gnl|CDD|200458 cd11319, AmyAc_euk_AmyA, Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 19/106 (17%)

Query: 28  WQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQP- 74
           W++  +YQ+    F   +G  T            G  +GI  KLD+   +G +++WI P 
Sbjct: 6   WRSRSIYQVLTDRFARTDGSSTAPCDTADRTYCGGTWKGIINKLDYIQGMGFDAIWISPI 65

Query: 75  ------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
                     G A  GY   +   ++P FG   D + L +  H RG
Sbjct: 66  VKNIEGNTAYGEAYHGYWAQDLYSLNPHFGTADDLKALSKALHKRG 111

AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes eukaryotic alpha-amylases including proteins from fungi, sponges, and protozoans. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 375

>gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 19  QVELPQKEW----WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLW 71
           Q E   + W    W+  ++Y+++  SF        G      E L +  +LG   IE + 
Sbjct: 129 QDERWDRAWRGRFWEPIVIYELHVGSFTP--DRFLGYFELAIELLPYLKELGITHIELMP 186

Query: 72  IQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +      G    GY  + Y      +G   DF+ L++ AH  G
Sbjct: 187 VAEH--PGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAG 227

Length = 628

>gnl|CDD|237740 PRK14511, PRK14511, maltooligosyl trehalose synthase; Provisional

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 56  TEKLDHFVDLGIESLWIQP-FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            E + +F DLG+  L++ P      G+  GYDV ++  ++P  G       L     + G
Sbjct: 23  AELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHG 82

Length = 879

>gnl|CDD|200490 cd11353, AmyAc_euk_bac_CMD_like, Alpha amylase catalytic domain found in eukaryotic and bacterial cyclomaltodextrinases and related proteins

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 31  AIMYQIYPRSF----RDVNGDGTGDMR--GITEKLDHFVDLGIESLWIQPFYPAGGADLG 84
           A+ Y IYP  F    ++ + DG  + R   + + + H   LGI +++  P + +     G
Sbjct: 2   AVFYHIYPLGFCGAPKENDFDGETEHRILKLEDWIPHLKKLGINAIYFGPVFESDSH--G 59

Query: 85  YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           YD  +Y  +D   G   DF+ + ++ H  G
Sbjct: 60  YDTRDYYKIDRRLGTNEDFKAVCKKLHENG 89

Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is mainly bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 366

>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 59  LDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           L +   LG+  L++ P   A  G+  GYDV ++ +++P  G       L E A +RG
Sbjct: 22  LPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARG 78

This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 825

>gnl|CDD|236518 PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 55  ITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVD---------VDPLFGDMHDF 103
           + E+     + GI ++W+ P Y   +GG D+GY V +  D         V   +G   + 
Sbjct: 24  LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEEL 83

Query: 104 EILIEEAHSRG 114
              I+  H  G
Sbjct: 84  LNAIDALHENG 94

Length = 479

>gnl|CDD|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 28  WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA-DLGYD 86
            + A++Y+++  +F        G      EKL +  DLGI ++ + P     G    GYD
Sbjct: 91  LEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYD 145

Query: 87  -VSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            V  Y   +  +G   D + L++ AH  G
Sbjct: 146 GVLPYAPHEA-YGGPDDLKALVDAAHGLG 173

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 544

>gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 28  WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL------DHFVDLGIESLWIQPFY----- 76
           W  + +Y++  R F   +    G++RG   KL       +   LG+  + + P +     
Sbjct: 156 WDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDE 215

Query: 77  ---PAGGAD--LGYDVSNYVDVDPLFG--DMHDFEILIEEAHSRG 114
              P  G     GY+   ++  DP        +F   I+EA S G
Sbjct: 216 HHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAG 260

Length = 1221

>gnl|CDD|200475 cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase)

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 59  LDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           + +  DLGI  L+  P   A  G+  GYDV ++  ++P  G       L     + G
Sbjct: 20  VPYLADLGISHLYASPILTARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHG 76

Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 660

>gnl|CDD|200487 cd11349, AmyAc_3, Alpha amylase catalytic domain found in an uncharacterized protein family

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 32/119 (26%), Positives = 41/119 (34%), Gaps = 36/119 (30%)

Query: 32  IMYQIYPRSF------RDVNGD----GTGDMRGITEK-LDHFVDLGIESLW--------I 72
           I+YQ+ PR F         NG     G G      +  L     LG   +W         
Sbjct: 2   IIYQLLPRLFGNKNTTNIPNGTIEENGVGKFNDFDDTALKEIKSLGFTHVWYTGVIRHAT 61

Query: 73  QPFYPA------------GGADLGYDVSNYVDVDPLFGD-----MHDFEILIEEAHSRG 114
           Q  Y A            G A   Y + +Y DVDP         M +FE L+E  H+ G
Sbjct: 62  QTDYSAYGIPPDDPDIVKGRAGSPYAIKDYYDVDPDLATDPTNRMEEFEALVERTHAAG 120

The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 456

>gnl|CDD|163564 TIGR03852, sucrose_gtfA, sucrose phosphorylase

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 51  DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
           +++ + + L+++    +  + + PF+P+ G D G+   +Y +VDP FGD  D E L E+
Sbjct: 15  NLKELNKVLENYFKDAVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGDWSDVEALSEK 72

In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism. Length = 470

>gnl|CDD|200492 cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylase catalytic domain found in sucrose phosphorylase (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 49  TGDMRGITEKLD-HFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILI 107
            G+++ +   LD +F  +    + I PF+P+   D G+D  +Y +VDP FG   D E L 
Sbjct: 14  GGNLKDLNTVLDTYFKGV-FGGVHILPFFPSSD-DRGFDPIDYTEVDPRFGTWDDIEALG 71

Query: 108 EE 109
           E+
Sbjct: 72  ED 73

Sucrose phosphorylase is a bacterial enzyme that catalyzes the phosphorolysis of sucrose to yield glucose-1-phosphate and fructose. These enzymes do not have the conserved calcium ion present in other alpha amylase family enzymes. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PRK10933	551	trehalose-6-phosphate hydrolase; Provisional	99.97
TIGR02456	539	treS_nterm trehalose synthase. Trehalose synthase	99.97
PRK10785	598	maltodextrin glucosidase; Provisional	99.97
TIGR02403	543	trehalose_treC alpha,alpha-phosphotrehalase. Treha	99.97
PRK09505	683	malS alpha-amylase; Reviewed	99.95
smart00642	166	Aamy Alpha-amylase domain.	99.95
PRK12313	633	glycogen branching enzyme; Provisional	99.94
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	99.94
KOG0471|consensus	545		99.94
COG0366	505	AmyA Glycosidases [Carbohydrate transport and meta	99.93
PRK05402	726	glycogen branching enzyme; Provisional	99.93
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	99.93
PF00128	316	Alpha-amylase: Alpha amylase, catalytic domain; In	99.93
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	99.92
PRK03705	658	glycogen debranching enzyme; Provisional	99.92
PRK14706	639	glycogen branching enzyme; Provisional	99.91
PRK12568	730	glycogen branching enzyme; Provisional	99.91
PLN02960	897	alpha-amylase	99.91
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	99.91
PLN00196	428	alpha-amylase; Provisional	99.9
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	99.9
PRK14705	1224	glycogen branching enzyme; Provisional	99.9
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	99.89
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	99.89
PLN02447	758	1,4-alpha-glucan-branching enzyme	99.88
PRK09441	479	cytoplasmic alpha-amylase; Reviewed	99.88
PLN02877	970	alpha-amylase/limit dextrinase	99.86
PLN02361	401	alpha-amylase	99.85
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	99.84
COG1523	697	PulA Type II secretory pathway, pullulanase PulA a	99.84
PLN02784	894	alpha-amylase	99.82
TIGR02401	825	trehalose_TreY malto-oligosyltrehalose synthase. T	99.81
PRK14511	879	maltooligosyl trehalose synthase; Provisional	99.81
PRK13840	495	sucrose phosphorylase; Provisional	99.81
KOG0470|consensus	757		99.78
PRK14507	1693	putative bifunctional 4-alpha-glucanotransferase/m	99.78
TIGR03852	470	sucrose_gtfA sucrose phosphorylase. In the forward	99.77
TIGR02455	688	TreS_stutzeri trehalose synthase, Pseudomonas stut	99.74
COG3280	889	TreY Maltooligosyl trehalose synthase [Carbohydrat	99.62
TIGR01531	1464	glyc_debranch glycogen debranching enzymye. glycog	99.6
PLN03244	872	alpha-amylase; Provisional	99.07
PF14701	423	hDGE_amylase: glucanotransferase domain of human g	99.0
KOG2212|consensus	504		98.0
PF14871	132	GHL6: Hypothetical glycosyl hydrolase 6	97.96
KOG3625|consensus	1521		97.88
PF02324	809	Glyco_hydro_70: Glycosyl hydrolase family 70; Inte	97.7
PF02638	311	DUF187: Glycosyl hydrolase like GH101; InterPro: I	97.13
PF14872	811	GHL5: Hypothetical glycoside hydrolase 5	97.12
PF14488	166	DUF4434: Domain of unknown function (DUF4434)	97.11
COG1649	418	Uncharacterized protein conserved in bacteria [Fun	97.08
PF00150	281	Cellulase: Cellulase (glycosyl hydrolase family 5)	96.32
PLN03059	840	beta-galactosidase; Provisional	96.05
PRK09936	296	hypothetical protein; Provisional	96.04
PRK14508	497	4-alpha-glucanotransferase; Provisional	95.84
PF01301	319	Glyco_hydro_35: Glycosyl hydrolases family 35; Int	95.79
PF07745	332	Glyco_hydro_53: Glycosyl hydrolase family 53; Inte	95.53
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	95.36
PF10566	273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	95.21
PLN02950	909	4-alpha-glucanotransferase	95.16
PF02446	496	Glyco_hydro_77: 4-alpha-glucanotransferase; InterP	94.98
cd06568	329	GH20_SpHex_like A subgroup of the Glycosyl hydrola	94.88
PLN03236	745	4-alpha-glucanotransferase; Provisional	94.87
PRK11052	695	malQ 4-alpha-glucanotransferase; Provisional	94.74
PLN02635	538	disproportionating enzyme	94.68
cd06562	348	GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c	94.38
PF01120	346	Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR00	94.36
cd06569	445	GH20_Sm-chitobiase-like The chitobiase of Serratia	94.28
PF13204	289	DUF4038: Protein of unknown function (DUF4038); PD	93.72
cd06565	301	GH20_GcnA-like Glycosyl hydrolase family 20 (GH20)	93.66
smart00812	384	Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydro	93.44
PRK10076	213	pyruvate formate lyase II activase; Provisional	92.83
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	92.57
PF02449	374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	92.46
PF00728	351	Glyco_hydro_20: Glycosyl hydrolase family 20, cata	92.27
cd02742	303	GH20_hexosaminidase Beta-N-acetylhexosaminidases o	92.27
cd06593	308	GH31_xylosidase_YicI YicI alpha-xylosidase is a gl	92.14
cd06592	303	GH31_glucosidase_KIAA1161 KIAA1161 is an uncharact	91.8
cd06564	326	GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (	91.15
PRK14507	1693	putative bifunctional 4-alpha-glucanotransferase/m	91.11
cd06563	357	GH20_chitobiase-like The chitobiase of Serratia ma	91.05
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	90.92
TIGR03356	427	BGL beta-galactosidase.	90.77
cd06570	311	GH20_chitobiase-like_1 A functionally uncharacteri	90.6
PRK01060	281	endonuclease IV; Provisional	90.37
PRK14582	671	pgaB outer membrane N-deacetylase; Provisional	90.32
KOG0496|consensus	649		90.21
COG3867	403	Arabinogalactan endo-1,4-beta-galactosidase [Carbo	89.91
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	89.89
PTZ00445	219	p36-lilke protein; Provisional	89.17
KOG1065|consensus	805		88.94
PLN02849	503	beta-glucosidase	88.52
PRK15452	443	putative protease; Provisional	88.1
PF05913	357	DUF871: Bacterial protein of unknown function (DUF	87.68
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	87.61
cd06589	265	GH31 The enzymes of glycosyl hydrolase family 31 (	87.49
cd06599	317	GH31_glycosidase_Aec37 Glycosyl hydrolase family 3	87.43
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	87.4
PRK15447	301	putative protease; Provisional	87.38
PF13199	559	Glyco_hydro_66: Glycosyl hydrolase family 66; PDB:	87.33
COG2730	407	BglC Endoglucanase [Carbohydrate transport and met	87.06
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	87.0
PF13200	316	DUF4015: Putative glycosyl hydrolase domain	86.25
cd06594	317	GH31_glucosidase_YihQ YihQ is a bacterial alpha-gl	86.12
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	86.09
COG3589	360	Uncharacterized conserved protein [Function unknow	85.86
cd06597	340	GH31_transferase_CtsY CtsY (cyclic tetrasaccharide	85.58
cd06604	339	GH31_glucosidase_II_MalA Alpha-glucosidase II (alp	85.56
PF03198	314	Glyco_hydro_72: Glucanosyltransferase; InterPro: I	85.45
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	84.96
PF08139	25	LPAM_1: Prokaryotic membrane lipoprotein lipid att	84.94
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	84.79
PRK12928	290	lipoyl synthase; Provisional	84.75
COG3222	211	Uncharacterized protein conserved in bacteria [Fun	83.64
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	83.42
PLN02591	250	tryptophan synthase	83.4
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	83.16
COG0826	347	Collagenase and related proteases [Posttranslation	82.72
cd00953	279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	82.35
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	82.1
PRK09856	275	fructoselysine 3-epimerase; Provisional	82.02
PRK09852	474	cryptic 6-phospho-beta-glucosidase; Provisional	81.78
cd06602	339	GH31_MGAM_SI_GAA This family includes the followin	80.97
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	80.5
PF07071	218	DUF1341: Protein of unknown function (DUF1341); In	80.49
PF02065	394	Melibiase: Melibiase; InterPro: IPR000111 O-Glycos	80.48
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	80.33
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	80.13
PLN02814	504	beta-glucosidase	80.08
cd06600	317	GH31_MGAM-like This family includes the following	80.04

>PRK10933 trehalose-6-phosphate hydrolase; Provisional

Probab=99.97  E-value=1.5e-31  Score=225.74  Aligned_cols=109  Identities=42%  Similarity=0.915  Sum_probs=103.8

Q ss_pred             CCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD  102 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~  102 (136)
                      ..+.||++.+|||+++++|.+++++++|||+|++++|+||++||||+|||+||++++..++||++.||+.|||+|||.++
T Consensus         3 ~~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d   82 (551)
T PRK10933          3 NLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDD   82 (551)
T ss_pred             CcchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHH
Confidence            45789999999999999999999999999999999999999999999999999998887899999999999999999999


Q ss_pred             HHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953        103 FEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus       103 ~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      |++||++||++||+||+   +||++.+|++++
T Consensus        83 ~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~  114 (551)
T PRK10933         83 FDELVAQAKSRGIRIILDMVFNHTSTQHAWFR  114 (551)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCccCchhHHH
Confidence            99999999999999999   999999887643

>TIGR02456 treS_nterm trehalose synthase

Probab=99.97  E-value=2.2e-31  Score=224.21  Aligned_cols=105  Identities=39%  Similarity=0.744  Sum_probs=101.1

Q ss_pred             cccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         26 EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .||++.+||||++++|.+++++++|||+|++++|+||++||||+|||+||++++..++||++.||++|||+|||.++|++
T Consensus         1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~   80 (539)
T TIGR02456         1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKD   80 (539)
T ss_pred             CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999887899999999999999999999999


Q ss_pred             HHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953        106 LIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       106 lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      ||++||++||+||+   +||++.+|+.+
T Consensus        81 Lv~~ah~~Gi~vilD~V~NH~s~~~~~f  108 (539)
T TIGR02456        81 FVDEAHARGMRVIIDLVLNHTSDQHPWF  108 (539)
T ss_pred             HHHHHHHCCCEEEEEeccCcCCCCCHHH
Confidence            99999999999999   99999988643

Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).

>PRK10785 maltodextrin glucosidase; Provisional

Probab=99.97  E-value=3.1e-31  Score=225.60  Aligned_cols=108  Identities=28%  Similarity=0.466  Sum_probs=99.6

Q ss_pred             CCCccccCCceEEEEecccccCcCCC-----------------------------------CCCCHHHHHHhHHHHHHcC
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGD-----------------------------------GTGDMRGITEKLDHFVDLG   66 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~-----------------------------------~~g~~~~l~~~l~~l~~lG   66 (136)
                      .+.|.|+++.+||||+|++|.++++.                                   -+|||+|++++|+||++||
T Consensus       113 ~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~LG  192 (598)
T PRK10785        113 DQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLG  192 (598)
T ss_pred             CCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHcC
Confidence            56789999999999999999876641                                   0699999999999999999


Q ss_pred             CcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         67 IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        67 ~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      ||+|||+||+++++ .|||++.||++|||+|||.++|++||++||++||+||+   +||++.+|+++
T Consensus       193 v~~I~L~Pif~s~s-~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f  258 (598)
T PRK10785        193 VTALYLNPIFTAPS-VHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWF  258 (598)
T ss_pred             CCEEEeCCcccCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHH
Confidence            99999999999876 59999999999999999999999999999999999999   99999988654

>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase

Probab=99.97  E-value=2.1e-30  Score=218.39  Aligned_cols=104  Identities=48%  Similarity=0.939  Sum_probs=100.7

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      ||++.+|||+++++|.++++++.|+++|++++|+||++||||+|||+||++++..++||++.||++|||+|||.++|++|
T Consensus         1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~l   80 (543)
T TIGR02403         1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEEL   80 (543)
T ss_pred             CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998878899999999999999999999999


Q ss_pred             HHHHHHCCCcEEE---eccCCCccCCC
Q psy12953        107 IEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       107 v~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      |++||++||+||+   +||++.+|+++
T Consensus        81 v~~ah~~gi~vilD~v~NH~~~~~~~f  107 (543)
T TIGR02403        81 VSEAKKRNIKIMLDMVFNHTSTEHEWF  107 (543)
T ss_pred             HHHHHHCCCEEEEEECccccccchHHH
Confidence            9999999999999   99999988754

Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.

>PRK09505 malS alpha-amylase; Reviewed

Probab=99.95  E-value=2e-28  Score=210.29  Aligned_cols=112  Identities=29%  Similarity=0.482  Sum_probs=99.0

Q ss_pred             hhhccCCCCCccccCCceEEEEecccccCcCCC----------C--------CCCHHHHHHhHHHHHHcCCcEEEEcCCc
Q psy12953         15 LVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGD----------G--------TGDMRGITEKLDHFVDLGIESLWIQPFY   76 (136)
Q Consensus        15 ~~~~~~~~~~~~w~~~~~iY~v~~~~f~~~~~~----------~--------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~   76 (136)
                      +..++...+.+.||++.+||||++++|.+++..          +        +|||+|++++|+||++||||+|||+||+
T Consensus       174 le~~~~~~~~~~~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~  253 (683)
T PRK09505        174 LERAETEAAAPFDWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPL  253 (683)
T ss_pred             eeecccCCCCChhhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccc
Confidence            333456678899999999999999999877631          1        5999999999999999999999999999


Q ss_pred             cCC--------------CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953         77 PAG--------------GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus        77 ~~~--------------~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      ++.              ..++||++.||+.+||+|||.+||++||++||++||+||+   +||++..
T Consensus       254 ~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~  320 (683)
T PRK09505        254 EQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYA  320 (683)
T ss_pred             cccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCccc
Confidence            862              2468999999999999999999999999999999999999   9999953

>smart00642 Aamy Alpha-amylase domain

Probab=99.95  E-value=7e-28  Score=175.96  Aligned_cols=91  Identities=44%  Similarity=0.872  Sum_probs=87.4

Q ss_pred             EEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC---CCCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Q psy12953         35 QIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG---ADLGYDVSNYVDVDPLFGDMHDFEILIEEAH  111 (136)
Q Consensus        35 ~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~---~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah  111 (136)
                      |+++++|.++++++.|+|++++++|+||++||||+|||+|+++++.   .++||++.||++++|+|||.++|++||++||
T Consensus         1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h   80 (166)
T smart00642        1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH   80 (166)
T ss_pred             CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999986   6899999999999999999999999999999


Q ss_pred             HCCCcEEE---eccCCC
Q psy12953        112 SRGKPKRT---FREVTK  125 (136)
Q Consensus       112 ~~Gi~vil---~nh~~~  125 (136)
                      ++||+||+   +||++.
T Consensus        81 ~~Gi~vilD~V~NH~~~   97 (166)
T smart00642       81 ARGIKVILDVVINHTSD   97 (166)
T ss_pred             HCCCEEEEEECCCCCCC
Confidence            99999999   888874

>PRK12313 glycogen branching enzyme; Provisional

Probab=99.94  E-value=6.4e-27  Score=200.30  Aligned_cols=101  Identities=16%  Similarity=0.252  Sum_probs=93.4

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      +.++.+|||+|+++|.++++++.|+|++++++| +||++||||+|||+||++++. .+|||++.||+++||+|||+++|+
T Consensus       144 ~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k  223 (633)
T PRK12313        144 LDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFM  223 (633)
T ss_pred             CCCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHH
Confidence            446789999999999988777789999999995 999999999999999999986 579999999999999999999999


Q ss_pred             HHHHHHHHCCCcEEE---eccCCCcc
Q psy12953        105 ILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      +||++||++||+|||   +||++.++
T Consensus       224 ~lv~~~H~~Gi~VilD~V~nH~~~~~  249 (633)
T PRK12313        224 YLVDALHQNGIGVILDWVPGHFPKDD  249 (633)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCCc
Confidence            999999999999999   99998653

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=99.94  E-value=1.5e-26  Score=195.12  Aligned_cols=95  Identities=23%  Similarity=0.359  Sum_probs=89.2

Q ss_pred             cCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      +++.+|||+|++.|+.     .|+|++++++|+||++||||+|||+||++.+. .+|||++.||++++++||+.+||++|
T Consensus        91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~l  165 (542)
T TIGR02402        91 LEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKAL  165 (542)
T ss_pred             ccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHH
Confidence            6899999999999975     39999999999999999999999999999875 67999999999999999999999999


Q ss_pred             HHHHHHCCCcEEE---eccCCCcc
Q psy12953        107 IEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus       107 v~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      |++||++||+||+   +||++.++
T Consensus       166 V~~aH~~Gi~VilD~V~NH~~~~~  189 (542)
T TIGR02402       166 VDAAHGLGLGVILDVVYNHFGPEG  189 (542)
T ss_pred             HHHHHHCCCEEEEEEccCCCCCcc
Confidence            9999999999999   99987643

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>KOG0471|consensus

Probab=99.94  E-value=6e-27  Score=197.51  Aligned_cols=109  Identities=38%  Similarity=0.761  Sum_probs=104.8

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      .++||++.++||+++++|.++++++.|+++|+.++|+||+++|||+||++||++++..++||++.||+.++|+|||.++|
T Consensus        11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf   90 (545)
T KOG0471|consen   11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDF   90 (545)
T ss_pred             CchhhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCCCCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFANNQG  132 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~~~~  132 (136)
                      ++|++++|++||++|+   .||++..|+++..
T Consensus        91 ~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~  122 (545)
T KOG0471|consen   91 KELILAMHKLGIKIIADLVINHRSDEVEWFKA  122 (545)
T ss_pred             HHHHHHHhhcceEEEEeeccccCCcccccccc
Confidence            9999999999999999   9999987776654

>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.7e-26  Score=190.28  Aligned_cols=101  Identities=48%  Similarity=0.893  Sum_probs=96.4

Q ss_pred             ceEEEEecccccCcCC------CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         31 AIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        31 ~~iY~v~~~~f~~~~~------~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      .++||+++++|.++++      +|+|||+|++++|+||++|||++|||+||++++..++||++.||+.+||++||.++|+
T Consensus         1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~   80 (505)
T COG0366           1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFK   80 (505)
T ss_pred             CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHH
Confidence            4799999999999998      8889999999999999999999999999999988899999999999999999999999


Q ss_pred             HHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953        105 ILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      +|+++||++||+||+   +||++..|+.+.
T Consensus        81 ~li~~~H~~gi~vi~D~V~NH~s~~~~~f~  110 (505)
T COG0366          81 ELVEEAHKRGIKVILDLVFNHTSDEHPWFK  110 (505)
T ss_pred             HHHHHHHHCCCEEEEEeccCcCCCccHHHH
Confidence            999999999999999   899999988643

>PRK05402 glycogen branching enzyme; Provisional

Probab=99.93  E-value=5.2e-26  Score=197.21  Aligned_cols=99  Identities=18%  Similarity=0.288  Sum_probs=91.4

Q ss_pred             cCCceEEEEecccccCc-CCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         28 WQTAIMYQIYPRSFRDV-NGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        28 ~~~~~iY~v~~~~f~~~-~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      +++.+|||+|+++|.++ ++++.|+|++++++| +||++||||+|||+||++++. .+|||++.||++++|+|||+++|+
T Consensus       239 ~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk  318 (726)
T PRK05402        239 DAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFR  318 (726)
T ss_pred             cCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHH
Confidence            46689999999999876 566679999999996 999999999999999999875 579999999999999999999999


Q ss_pred             HHHHHHHHCCCcEEE---eccCCCc
Q psy12953        105 ILIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      +||++||++||+|||   +||++.+
T Consensus       319 ~lV~~~H~~Gi~VilD~V~NH~~~~  343 (726)
T PRK05402        319 YFVDACHQAGIGVILDWVPAHFPKD  343 (726)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCC
Confidence            999999999999999   9999764

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=99.93  E-value=1.7e-25  Score=191.00  Aligned_cols=96  Identities=20%  Similarity=0.298  Sum_probs=88.3

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      +.++.+|||+|+++|..+     |+|++++++| +||++||||+|||+||++++. .+|||++.||++++++|||++||+
T Consensus       135 ~~~~~~iYe~hv~~~~~~-----g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk  209 (613)
T TIGR01515       135 YEKPVSIYELHLGSWRHG-----LSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFM  209 (613)
T ss_pred             ccCCceEEEEehhhccCC-----CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHH
Confidence            344679999999999753     8999999996 999999999999999999875 569999999999999999999999


Q ss_pred             HHHHHHHHCCCcEEE---eccCCCcc
Q psy12953        105 ILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      +||++||++||+|||   +||++.++
T Consensus       210 ~lV~~~H~~Gi~VilD~V~NH~~~~~  235 (613)
T TIGR01515       210 YFVDACHQAGIGVILDWVPGHFPKDD  235 (613)
T ss_pred             HHHHHHHHCCCEEEEEecccCcCCcc
Confidence            999999999999999   99998654

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3

Probab=99.93  E-value=1.8e-26  Score=178.19  Aligned_cols=80  Identities=39%  Similarity=0.738  Sum_probs=76.3

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      |||+|++++|+||++||||+|||+||++++..++||++.||++|||+|||.+||++||++||++||+||+   +||++.+
T Consensus         1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~   80 (316)
T PF00128_consen    1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD   80 (316)
T ss_dssp             SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred             CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence            7999999999999999999999999999887789999999999999999999999999999999999999   9999998


Q ss_pred             cCC
Q psy12953        127 FAN  129 (136)
Q Consensus       127 ~~~  129 (136)
                      |+.
T Consensus        81 ~~~   83 (316)
T PF00128_consen   81 HPW   83 (316)
T ss_dssp             SHH
T ss_pred             ccc
Confidence            875

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=99.92  E-value=2.8e-25  Score=191.44  Aligned_cols=103  Identities=17%  Similarity=0.414  Sum_probs=91.1

Q ss_pred             cccCCceEEEEecccccCcCC----CCCCCHHHHHHh--HHHHHHcCCcEEEEcCCccCCC----------CCCCCCccC
Q psy12953         26 EWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEK--LDHFVDLGIESLWIQPFYPAGG----------ADLGYDVSN   89 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~--l~~l~~lG~~~I~l~Pi~~~~~----------~~~gY~~~d   89 (136)
                      ..|++.+|||+|+++|+..++    ...|+|+|++++  |+||++||||+|||+||++...          .+|||++.|
T Consensus       151 ~~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~  230 (688)
T TIGR02100       151 TPWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLG  230 (688)
T ss_pred             CCccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccc
Confidence            357999999999999986533    347999999985  9999999999999999998753          359999999


Q ss_pred             CCCCCCCC---CCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         90 YVDVDPLF---GDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        90 ~~~vd~~~---Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |+++|++|   |+.+|||+||++||++||+|||   +||++.++.
T Consensus       231 y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~  275 (688)
T TIGR02100       231 FFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNE  275 (688)
T ss_pred             ccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCC
Confidence            99999999   5789999999999999999999   999987543

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PRK03705 glycogen debranching enzyme; Provisional

Probab=99.92  E-value=4.3e-25  Score=189.44  Aligned_cols=101  Identities=17%  Similarity=0.333  Sum_probs=89.3

Q ss_pred             ccccCCceEEEEecccccCcCC----CCCCCHHHHHH--hHHHHHHcCCcEEEEcCCccCCC----------CCCCCCcc
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITE--KLDHFVDLGIESLWIQPFYPAGG----------ADLGYDVS   88 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~--~l~~l~~lG~~~I~l~Pi~~~~~----------~~~gY~~~   88 (136)
                      ...|++.+|||+|++.|+..++    +..|+|.++++  +|+||++||||+|||+||++..+          .+|||++.
T Consensus       145 ~~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~  224 (658)
T PRK03705        145 RTPWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPL  224 (658)
T ss_pred             CCCccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccc
Confidence            3457899999999999986432    34699999997  59999999999999999998743          46999999


Q ss_pred             CCCCCCCCCCCH-----HHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         89 NYVDVDPLFGDM-----HDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        89 d~~~vd~~~Gt~-----~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      ||+++|++|||.     +|||+||++||++||+|||   +||++.
T Consensus       225 ~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~  269 (658)
T PRK03705        225 AMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAE  269 (658)
T ss_pred             cccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccC
Confidence            999999999985     7999999999999999999   999985

>PRK14706 glycogen branching enzyme; Provisional

Probab=99.91  E-value=2.6e-24  Score=184.19  Aligned_cols=99  Identities=16%  Similarity=0.201  Sum_probs=89.8

Q ss_pred             cCCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .+..+|||+|+++|+..++..-++|++++++| +||++||||+|+|+||++.+. .+|||++.+|++++++||+++||++
T Consensus       142 ~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~  221 (639)
T PRK14706        142 DQPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKY  221 (639)
T ss_pred             CCCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHH
Confidence            34589999999999865544458999999996 899999999999999999876 5799999999999999999999999


Q ss_pred             HHHHHHHCCCcEEE---eccCCCc
Q psy12953        106 LIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus       106 lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      ||++||++||+||+   +||++.+
T Consensus       222 lv~~~H~~gi~VilD~v~nH~~~~  245 (639)
T PRK14706        222 LVNHLHGLGIGVILDWVPGHFPTD  245 (639)
T ss_pred             HHHHHHHCCCEEEEEecccccCcc
Confidence            99999999999999   9998764

>PRK12568 glycogen branching enzyme; Provisional

Probab=99.91  E-value=3.8e-24  Score=184.41  Aligned_cols=100  Identities=14%  Similarity=0.171  Sum_probs=92.1

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      ..++.+|||+|+++|+.+++++.+++++++++ |+||++||||+|+|+||++++. .+|||++.+|++++++||++++|+
T Consensus       243 ~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk  322 (730)
T PRK12568        243 VPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFA  322 (730)
T ss_pred             CCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHH
Confidence            45678999999999997766667899999998 5999999999999999999876 579999999999999999999999


Q ss_pred             HHHHHHHHCCCcEEE---eccCCCc
Q psy12953        105 ILIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      +||++||++||+||+   +||++.+
T Consensus       323 ~lV~~~H~~Gi~VIlD~V~nH~~~d  347 (730)
T PRK12568        323 QFVDACHRAGIGVILDWVSAHFPDD  347 (730)
T ss_pred             HHHHHHHHCCCEEEEEeccccCCcc
Confidence            999999999999999   9998875

>PLN02960 alpha-amylase

Probab=99.91  E-value=3.8e-24  Score=185.93  Aligned_cols=102  Identities=20%  Similarity=0.258  Sum_probs=91.3

Q ss_pred             ccccCCceEEEEecccccCcCCCCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHH
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHD  102 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~  102 (136)
                      +.++++.+|||+|++.|..  +.+.|+|++++++ |+||++||||+|||+||++.+. .+|||+++||++++++|||+++
T Consensus       390 p~~~~~~vIYElHvg~~~~--e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~d  467 (897)
T PLN02960        390 PKVPKSLRIYECHVGISGS--EPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDD  467 (897)
T ss_pred             CCCCCCcEEEEEecccccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHH
Confidence            3456788999999998853  3456899999976 9999999999999999999876 6799999999999999999999


Q ss_pred             HHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953        103 FEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus       103 ~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |++||++||++||+|||   +||++.++.
T Consensus       468 fk~LVd~aH~~GI~VILDvV~NH~~~d~~  496 (897)
T PLN02960        468 FKRLVDEAHGLGLLVFLDIVHSYAAADEM  496 (897)
T ss_pred             HHHHHHHHHHCCCEEEEEecccccCCccc
Confidence            99999999999999999   899988753

>TIGR02104 pulA_typeI pullulanase, type I

Probab=99.91  E-value=1.6e-24  Score=184.71  Aligned_cols=101  Identities=25%  Similarity=0.442  Sum_probs=86.9

Q ss_pred             ccccCCceEEEEecccccCcCCCC---CCCHHHHHHh-----------HHHHHHcCCcEEEEcCCccCCC---------C
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNGDG---TGDMRGITEK-----------LDHFVDLGIESLWIQPFYPAGG---------A   81 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~~~---~g~~~~l~~~-----------l~~l~~lG~~~I~l~Pi~~~~~---------~   81 (136)
                      ..-+++.+|||+|++.|+..++++   .|+|.+++++           |+||++||||+|||+||++.++         .
T Consensus       122 ~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~  201 (605)
T TIGR02104       122 LENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAY  201 (605)
T ss_pred             CCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCC
Confidence            344567899999999998655433   5777777765           9999999999999999999764         3


Q ss_pred             CCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         82 DLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        82 ~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      +|||++.||++++++||+        .+|||+||++||++||+|||   +||++.
T Consensus       202 ~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~  256 (605)
T TIGR02104       202 NWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYS  256 (605)
T ss_pred             CCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccC
Confidence            599999999999999987        48999999999999999999   999963

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PLN00196 alpha-amylase; Provisional

Probab=99.90  E-value=4.3e-23  Score=169.82  Aligned_cols=100  Identities=20%  Similarity=0.361  Sum_probs=86.4

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILI  107 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv  107 (136)
                      .+.+|+|-+..   +.....+|++++++++|+||++||||+|||+|++++.+ ++||++.||+++| ++|||.+||++||
T Consensus        23 ~~~v~~Q~F~W---~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s-~hGY~~~D~y~ld~~~fGt~~elk~Lv   98 (428)
T PLN00196         23 AGQVLFQGFNW---ESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVS-EQGYMPGRLYDLDASKYGNEAQLKSLI   98 (428)
T ss_pred             CCCEEEEeecc---CCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCcccCCCHHHHHHHH
Confidence            56788886552   22233458999999999999999999999999998864 6999999999999 6999999999999


Q ss_pred             HHHHHCCCcEEE---eccCCCccCCCCC
Q psy12953        108 EEAHSRGKPKRT---FREVTKSFANNQG  132 (136)
Q Consensus       108 ~~ah~~Gi~vil---~nh~~~~~~~~~~  132 (136)
                      ++||++||+||+   +||++.++.+..+
T Consensus        99 ~~aH~~GIkVilDvV~NH~~~~~~~~~~  126 (428)
T PLN00196         99 EAFHGKGVQVIADIVINHRTAEHKDGRG  126 (428)
T ss_pred             HHHHHCCCEEEEEECccCcccccccCCC
Confidence            999999999999   9999988776544

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.7e-23  Score=177.53  Aligned_cols=97  Identities=23%  Similarity=0.394  Sum_probs=89.4

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .|++.+|||+|+.+|+. + ...|+++..+++|+||++||||+|.||||.+.+. .+|||+++.|+++.++|||+++||+
T Consensus       141 ~~e~~vIYElHvGs~~~-~-~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~  218 (628)
T COG0296         141 FWEPIVIYELHVGSFTP-D-RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKA  218 (628)
T ss_pred             CCCCceEEEEEeeeccC-C-CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHH
Confidence            37789999999999987 3 5568999999999999999999999999999988 7899999999999999999999999


Q ss_pred             HHHHHHHCCCcEEE---eccCCC
Q psy12953        106 LIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus       106 lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      ||++||++||.|||   +||.+.
T Consensus       219 fVD~aH~~GIgViLD~V~~HF~~  241 (628)
T COG0296         219 LVDAAHQAGIGVILDWVPNHFPP  241 (628)
T ss_pred             HHHHHHHcCCEEEEEecCCcCCC
Confidence            99999999999999   666554

>PRK14705 glycogen branching enzyme; Provisional

Probab=99.90  E-value=1.5e-23  Score=188.17  Aligned_cols=94  Identities=20%  Similarity=0.269  Sum_probs=86.9

Q ss_pred             cCCceEEEEecccccCcCCCCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .+..+|||+|+++|...     ++|+++.++ |+|||+||||+|+||||++++. .+|||++.+|++++++|||++||++
T Consensus       745 ~~p~~IYEvHvgsf~~~-----~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~  819 (1224)
T PRK14705        745 NSPMSVYEVHLGSWRLG-----LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRF  819 (1224)
T ss_pred             cCCcEEEEEEecccccC-----CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHH
Confidence            46789999999999762     789999988 6999999999999999999876 6799999999999999999999999


Q ss_pred             HHHHHHHCCCcEEE---eccCCCc
Q psy12953        106 LIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus       106 lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      ||++||++||+||+   +||.+.+
T Consensus       820 lVd~~H~~GI~VILD~V~nH~~~d  843 (1224)
T PRK14705        820 LVDSLHQAGIGVLLDWVPAHFPKD  843 (1224)
T ss_pred             HHHHHHHCCCEEEEEeccccCCcc
Confidence            99999999999999   9998654

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=99.89  E-value=3.1e-23  Score=184.97  Aligned_cols=102  Identities=26%  Similarity=0.467  Sum_probs=88.2

Q ss_pred             ccCCceEEEEecccccCcCC------CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-------------------CC
Q psy12953         27 WWQTAIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG-------------------GA   81 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~------~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-------------------~~   81 (136)
                      .+++.+|||+|++.|+....      ...|+|++++++|+||++||||+|||+||++..                   .+
T Consensus       448 ~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~y  527 (1111)
T TIGR02102       448 KREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNY  527 (1111)
T ss_pred             CccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCcccccccccccccccccccccccccc
Confidence            36788999999999984322      136999999999999999999999999998621                   13


Q ss_pred             CCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         82 DLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        82 ~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      +|||++.+|++++++||+        .+|||+||++||++||+|||   +||++..++
T Consensus       528 nWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~  585 (1111)
T TIGR02102       528 NWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI  585 (1111)
T ss_pred             ccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc
Confidence            599999999999999998        48999999999999999999   999986543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=99.89  E-value=6.3e-23  Score=185.34  Aligned_cols=104  Identities=20%  Similarity=0.380  Sum_probs=89.4

Q ss_pred             ccccCCceEEEEecccccCcCC----CCCCCHHHHH--HhHHHHHHcCCcEEEEcCCccCCC----------CCCCCCcc
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNG----DGTGDMRGIT--EKLDHFVDLGIESLWIQPFYPAGG----------ADLGYDVS   88 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~--~~l~~l~~lG~~~I~l~Pi~~~~~----------~~~gY~~~   88 (136)
                      ..-|++.+|||+|+++|+....    +..|+++++.  +.|+||++||||+|||+||++...          ++|||++.
T Consensus       153 ~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~  232 (1221)
T PRK14510        153 HGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTV  232 (1221)
T ss_pred             CCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCC
Confidence            3457899999999999985332    3357777777  667899999999999999998753          35899999


Q ss_pred             CCCCCCCCCC--CHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         89 NYVDVDPLFG--DMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        89 d~~~vd~~~G--t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      ||+++||+||  +.+|||+||++||++||+|||   +||++.++.
T Consensus       233 ~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~  277 (1221)
T PRK14510        233 AFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNH  277 (1221)
T ss_pred             CCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCC
Confidence            9999999999  999999999999999999999   999987643

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=99.88  E-value=2.9e-22  Score=173.28  Aligned_cols=97  Identities=20%  Similarity=0.283  Sum_probs=87.3

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHH-hHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITE-KLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~-~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      .+.+|||+|++.|+.  ....|+++++.+ .|+||++||||+|+|+||++.+. .+|||++.||++++++||++++|++|
T Consensus       228 ~~~~IYE~Hvg~~~~--~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~L  305 (758)
T PLN02447        228 AALRIYEAHVGMSSE--EPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYL  305 (758)
T ss_pred             CCCEEEEEeCCcccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHH
Confidence            567999999998853  335689999854 69999999999999999999876 67999999999999999999999999


Q ss_pred             HHHHHHCCCcEEE---eccCCCcc
Q psy12953        107 IEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus       107 v~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      |++||++||+|||   +||++.++
T Consensus       306 Vd~aH~~GI~VilDvV~nH~~~~~  329 (758)
T PLN02447        306 IDKAHSLGLRVLMDVVHSHASKNT  329 (758)
T ss_pred             HHHHHHCCCEEEEEeccccccccc
Confidence            9999999999999   99998754

>PRK09441 cytoplasmic alpha-amylase; Reviewed

Probab=99.88  E-value=2.2e-22  Score=167.48  Aligned_cols=93  Identities=18%  Similarity=0.375  Sum_probs=80.2

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCC---------CCCCCCC
Q psy12953         30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYV---------DVDPLFG   98 (136)
Q Consensus        30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~---------~vd~~~G   98 (136)
                      ..+|.|.+-....    .++.+|++++++|+||++||||+|||+||+++.+  .++||++.||+         .|||+||
T Consensus         3 ~~~~~q~f~w~~~----~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fG   78 (479)
T PRK09441          3 NGTMMQYFEWYLP----NDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYG   78 (479)
T ss_pred             CceEEEEEEeccC----CCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcC
Confidence            4567776544432    2336788999999999999999999999999874  46999999999         7999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      |.+||++||++||++||+||+   +||++.+
T Consensus        79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~  109 (479)
T PRK09441         79 TKEELLNAIDALHENGIKVYADVVLNHKAGA  109 (479)
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEECcccccCC
Confidence            999999999999999999999   9999853

>PLN02877 alpha-amylase/limit dextrinase

Probab=99.86  E-value=2.6e-21  Score=170.34  Aligned_cols=105  Identities=16%  Similarity=0.300  Sum_probs=88.2

Q ss_pred             cccCCceEEEEecccccCcCC----CCCCCHHHHHHh-------HHHHHHcCCcEEEEcCCccCC---------------
Q psy12953         26 EWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEK-------LDHFVDLGIESLWIQPFYPAG---------------   79 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~-------l~~l~~lG~~~I~l~Pi~~~~---------------   79 (136)
                      .-+.+.+|||+|++.|+..+.    ...|+|.+++++       |+||++||||+|+|+|+++.+               
T Consensus       335 ~~~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~  414 (970)
T PLN02877        335 LSFSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPK  414 (970)
T ss_pred             CCCcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccc
Confidence            345789999999999986543    346999888776       667777799999999998852               


Q ss_pred             -----------------------CCCCCCCccCCCCCCCCCCC-------HHHHHHHHHHHHHCCCcEEE---eccCCCc
Q psy12953         80 -----------------------GADLGYDVSNYVDVDPLFGD-------MHDFEILIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus        80 -----------------------~~~~gY~~~d~~~vd~~~Gt-------~~~~~~lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                                             .++|||++.+|++++.+|++       ..|||+||++||++||+|||   +||+..+
T Consensus       415 ~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~  494 (970)
T PLN02877        415 ELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSS  494 (970)
T ss_pred             hhccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCC
Confidence                                   16799999999999999998       35899999999999999999   9999876


Q ss_pred             cCCC
Q psy12953        127 FANN  130 (136)
Q Consensus       127 ~~~~  130 (136)
                      ++..
T Consensus       495 g~~~  498 (970)
T PLN02877        495 GPFD  498 (970)
T ss_pred             CCcc
Confidence            6543

>PLN02361 alpha-amylase

Probab=99.85  E-value=6.6e-21  Score=155.71  Aligned_cols=94  Identities=15%  Similarity=0.231  Sum_probs=80.8

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE  108 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~  108 (136)
                      .+.+|+|-+-..-.+     ...|++++++|+||++||||+|||+|++++.+ ++||++.||+++||+|||.+||++||+
T Consensus        10 ~~~v~lQ~F~W~~~~-----~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~-~~GY~~~d~y~~~~~~Gt~~el~~li~   83 (401)
T PLN02361         10 GREILLQAFNWESHK-----HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLA-PEGYLPQNLYSLNSAYGSEHLLKSLLR   83 (401)
T ss_pred             CCcEEEEEEeccCCc-----cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCC-CCCCCcccccccCcccCCHHHHHHHHH
Confidence            367788865443221     25789999999999999999999999999865 599999999999999999999999999


Q ss_pred             HHHHCCCcEEE---eccCCCccC
Q psy12953        109 EAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus       109 ~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      +||++||+||+   +||++-...
T Consensus        84 ~~h~~gi~vi~D~V~NH~~g~~~  106 (401)
T PLN02361         84 KMKQYNVRAMADIVINHRVGTTQ  106 (401)
T ss_pred             HHHHcCCEEEEEEccccccCCCC
Confidence            99999999999   999864433

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=99.84  E-value=6.1e-21  Score=167.63  Aligned_cols=106  Identities=17%  Similarity=0.346  Sum_probs=89.5

Q ss_pred             cccCCceEEEEecccccCcCC----CCCCCHHHHHHh-------HHHHHHcCCcEEEEcCCccCC---------------
Q psy12953         26 EWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEK-------LDHFVDLGIESLWIQPFYPAG---------------   79 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~-------l~~l~~lG~~~I~l~Pi~~~~---------------   79 (136)
                      ..+++.+|||+|++.|+..+.    ...|+|.+++++       |++|++||||+|+|||+++..               
T Consensus       248 ~~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~  327 (898)
T TIGR02103       248 ASFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQP  327 (898)
T ss_pred             CCCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccc
Confidence            357889999999999985432    347999999875       666678899999999998752               


Q ss_pred             ------------------------------------------------CCCCCCCccCCCCCCCCCCCH-------HHHH
Q psy12953         80 ------------------------------------------------GADLGYDVSNYVDVDPLFGDM-------HDFE  104 (136)
Q Consensus        80 ------------------------------------------------~~~~gY~~~d~~~vd~~~Gt~-------~~~~  104 (136)
                                                                      .+.|||++.+|+.++.+|++.       .|||
T Consensus       328 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk  407 (898)
T TIGR02103       328 FSKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFR  407 (898)
T ss_pred             hhhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHH
Confidence                                                            136999999999999999983       6999


Q ss_pred             HHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953        105 ILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      +||++||++||+|||   +||++.+++...
T Consensus       408 ~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~  437 (898)
T TIGR02103       408 EMVQALNKTGLNVVMDVVYNHTNASGPNDR  437 (898)
T ss_pred             HHHHHHHHCCCEEEEEeecccccccCccCc
Confidence            999999999999999   999998776544

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]

Probab=99.84  E-value=3.5e-21  Score=165.35  Aligned_cols=102  Identities=20%  Similarity=0.458  Sum_probs=88.8

Q ss_pred             CccccCCceEEEEecccccCcC----CCCCCCHHHHHHh--HHHHHHcCCcEEEEcCCccCC----------CCCCCCCc
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVN----GDGTGDMRGITEK--LDHFVDLGIESLWIQPFYPAG----------GADLGYDV   87 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~----~~~~g~~~~l~~~--l~~l~~lG~~~I~l~Pi~~~~----------~~~~gY~~   87 (136)
                      +.-.|++++|||+|++.|+..+    +...|+|.++.+.  |+|||+||||+|.|+||+...          .++|||+|
T Consensus       165 ~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP  244 (697)
T COG1523         165 PRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP  244 (697)
T ss_pred             CCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence            3335899999999999998432    3447999999999  999999999999999998752          26799999


Q ss_pred             cCCCCCCCCCCC-------HHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         88 SNYVDVDPLFGD-------MHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        88 ~d~~~vd~~~Gt-------~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      .+|++++++|.+       ..|||.||+++|++||+|||   |||+..
T Consensus       245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae  292 (697)
T COG1523         245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAE  292 (697)
T ss_pred             ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCccc
Confidence            999999999965       35999999999999999999   999964

>PLN02784 alpha-amylase

Probab=99.82  E-value=4.9e-20  Score=160.13  Aligned_cols=101  Identities=17%  Similarity=0.282  Sum_probs=86.4

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHH
Q psy12953         30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE  109 (136)
Q Consensus        30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~  109 (136)
                      ....|++....|.......+..+++++++++||++||||+|||+|++++.. ++||++.||+++|++|||.+||++||++
T Consensus       498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s-~~GY~p~D~y~lds~yGT~~ELk~LI~a  576 (894)
T PLN02784        498 TGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVS-PEGYMPKDLYNLNSRYGTIDELKDLVKS  576 (894)
T ss_pred             ccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCC-CCCcCcccccccCcCcCCHHHHHHHHHH
Confidence            456778888888733222246689999999999999999999999998774 5899999999999999999999999999


Q ss_pred             HHHCCCcEEE---eccCCCccCCCC
Q psy12953        110 AHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus       110 ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      ||++||+||+   +||++..+.+.+
T Consensus       577 ~H~~GIkVIlDiViNH~ag~f~~~~  601 (894)
T PLN02784        577 FHEVGIKVLGDAVLNHRCAHFQNQN  601 (894)
T ss_pred             HHHCCCEEEEEECcccccccccCCC
Confidence            9999999999   999986654443

>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase

Probab=99.81  E-value=8.7e-20  Score=158.84  Aligned_cols=78  Identities=23%  Similarity=0.359  Sum_probs=74.2

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVT  124 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~  124 (136)
                      +++|++++++|+||++|||++||++||+++. ..++||++.||+.|||++|+.++|++|+++||++||+||+   +||++
T Consensus        12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a   91 (825)
T TIGR02401        12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA   91 (825)
T ss_pred             CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence            3899999999999999999999999999974 4679999999999999999999999999999999999999   99999


Q ss_pred             Cc
Q psy12953        125 KS  126 (136)
Q Consensus       125 ~~  126 (136)
                      .+
T Consensus        92 ~~   93 (825)
T TIGR02401        92 VH   93 (825)
T ss_pred             cc
Confidence            87

This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.

>PRK14511 maltooligosyl trehalose synthase; Provisional

Probab=99.81  E-value=8.9e-20  Score=159.44  Aligned_cols=79  Identities=22%  Similarity=0.350  Sum_probs=75.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      .+|++++++++||++|||++|||+||+++. ..++||++.||+.|||++|+.++|++||++||++||+||+   +||++.
T Consensus        17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~   96 (879)
T PRK14511         17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV   96 (879)
T ss_pred             CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence            689999999999999999999999999984 4689999999999999999999999999999999999999   999998


Q ss_pred             ccC
Q psy12953        126 SFA  128 (136)
Q Consensus       126 ~~~  128 (136)
                      +++
T Consensus        97 ~~~   99 (879)
T PRK14511         97 GGP   99 (879)
T ss_pred             cCc
Confidence            774

>PRK13840 sucrose phosphorylase; Provisional

Probab=99.81  E-value=6.8e-20  Score=152.77  Aligned_cols=91  Identities=26%  Similarity=0.471  Sum_probs=81.8

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHH-HHHHcCCcEEEEcCCc-cCCCCCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLD-HFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~-~l~~lG~~~I~l~Pi~-~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      ++.++...+.+++.+      |+++|+.++|+ ||+++ |++|||+|+| +++..+.||++.||++|||+|||++||++|
T Consensus         2 ~n~~~litY~Ds~~~------GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L   74 (495)
T PRK13840          2 KNKVQLITYADRLGD------GGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKAL   74 (495)
T ss_pred             CCceEEEEeccCCCC------CCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHH
Confidence            466788888888752      79999999999 59999 9999999999 456778999999999999999999999999


Q ss_pred             HHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953        107 IEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus       107 v~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      ++     ||+||+   +||+|..|++++
T Consensus        75 ~~-----giklmlDlV~NHtS~~h~WFq   97 (495)
T PRK13840         75 GK-----THDIMADLIVNHMSAESPQFQ   97 (495)
T ss_pred             Hh-----CCeEEEEECCCcCCCCcHHHH
Confidence            84     999999   999999999854

>KOG0470|consensus

Probab=99.78  E-value=2.5e-19  Score=152.52  Aligned_cols=96  Identities=28%  Similarity=0.501  Sum_probs=85.1

Q ss_pred             CceEEEEecccccCcCCCC--CCCHHHHHHh-HHHHHHcCCcEEEEcCCccCC-C-CCCCCCccCCCCCCCCCCCHH---
Q psy12953         30 TAIMYQIYPRSFRDVNGDG--TGDMRGITEK-LDHFVDLGIESLWIQPFYPAG-G-ADLGYDVSNYVDVDPLFGDMH---  101 (136)
Q Consensus        30 ~~~iY~v~~~~f~~~~~~~--~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~-~-~~~gY~~~d~~~vd~~~Gt~~---  101 (136)
                      +..|||+|++.|+...+..  .|.+.+++++ |+|||+||+|+|.|+||++.. . ..|||.+++|++...+|||++   
T Consensus       229 sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~  308 (757)
T KOG0470|consen  229 SLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPC  308 (757)
T ss_pred             heEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCccc
Confidence            7899999999998544321  2229999999 999999999999999999994 3 589999999999999999999   


Q ss_pred             ---HHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953        102 ---DFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus       102 ---~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                         |||+||++||..||.|+|   .||++.
T Consensus       309 ri~efK~lVd~aHs~GI~VlLDVV~sHaa~  338 (757)
T KOG0470|consen  309 RINEFKELVDKAHSLGIEVLLDVVHSHAAK  338 (757)
T ss_pred             chHHHHHHHHHHhhCCcEEehhhhhhhccc
Confidence               999999999999999999   667665

>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional

Probab=99.78  E-value=1.2e-18  Score=159.90  Aligned_cols=88  Identities=18%  Similarity=0.288  Sum_probs=79.8

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccC-CCCCCCCCccCCCCCCCCCCCHHHHHHHHHH
Q psy12953         31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEE  109 (136)
Q Consensus        31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~  109 (136)
                      ..+|.+....=        ++|++++++++||++|||++||++||+++ +..++||++.||+.|||+||+.++|++|+++
T Consensus       744 ~atyrlq~~~~--------~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~  815 (1693)
T PRK14507        744 RATYRLQFHKD--------FTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAA  815 (1693)
T ss_pred             ceeEEEEeCCC--------CCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHH
Confidence            44777765542        79999999999999999999999999996 4578999999999999999999999999999


Q ss_pred             HHHCCCcEEE---eccCCCc
Q psy12953        110 AHSRGKPKRT---FREVTKS  126 (136)
Q Consensus       110 ah~~Gi~vil---~nh~~~~  126 (136)
                      ||++||+||+   +||++.+
T Consensus       816 ah~~Gi~vilDiV~NH~~~~  835 (1693)
T PRK14507        816 LKAHGLGQLLDIVPNHMGVG  835 (1693)
T ss_pred             HHHCCCEEEEEecccccCCC
Confidence            9999999999   9999853

>TIGR03852 sucrose_gtfA sucrose phosphorylase

Probab=99.77  E-value=1.8e-19  Score=149.51  Aligned_cols=87  Identities=26%  Similarity=0.494  Sum_probs=78.5

Q ss_pred             EecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12953         36 IYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGK  115 (136)
Q Consensus        36 v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi  115 (136)
                      +.+.+|.|+++++.|+++++.++  ||++ ||++|||+|+|++++ ++||++.||+.|||+|||++||++|+++     |
T Consensus         3 v~lity~Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~s-D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~   73 (470)
T TIGR03852         3 AMLITYADSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTG-DRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y   73 (470)
T ss_pred             ceEEEecCCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCC-CCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence            44567777778888999999888  9999 799999999999986 8999999999999999999999999987     7


Q ss_pred             cEEE---eccCCCccCCCC
Q psy12953        116 PKRT---FREVTKSFANNQ  131 (136)
Q Consensus       116 ~vil---~nh~~~~~~~~~  131 (136)
                      +||+   +||+|.+|++++
T Consensus        74 kvmlDlV~NHtS~~h~WFq   92 (470)
T TIGR03852        74 YLMFDFMINHISRQSEYYQ   92 (470)
T ss_pred             hHHhhhcccccccchHHHH
Confidence            9998   999999998764

In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.

>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type

Probab=99.74  E-value=5.2e-18  Score=143.94  Aligned_cols=98  Identities=15%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHH---HHhHHHHHHcCCcEEEEcCCccC---------CCCCCCCCccCCCCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGI---TEKLDHFVDLGIESLWIQPFYPA---------GGADLGYDVSNYVDVDPL   96 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l---~~~l~~l~~lG~~~I~l~Pi~~~---------~~~~~gY~~~d~~~vd~~   96 (136)
                      ...+++.++|.++-...+   ..+-+.   ....+||++|||++|||+|++++         +..+.||++.|| .|||+
T Consensus        50 ~a~~W~~~~P~s~i~~~~---~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~Idp~  125 (688)
T TIGR02455        50 IASVWFTAYPAAIIAPEG---CSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DIDPL  125 (688)
T ss_pred             hcCeeEEecchhhcCCCC---CcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-ccCcc
Confidence            446889999999863332   233222   34478999999999999999999         888999999995 99999


Q ss_pred             CCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         97 FGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        97 ~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      |||.+||++|+++||++||+||+   +||++..|+ ++
T Consensus       126 ~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd-F~  162 (688)
T TIGR02455       126 LGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD-FR  162 (688)
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc-hH
Confidence            99999999999999999999999   999999998 44

Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.

>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=6.8e-16  Score=132.01  Aligned_cols=80  Identities=26%  Similarity=0.425  Sum_probs=74.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      =+|.+..+.|+||++|||.++|++||+.... +.|||+|+|+..|||++|+.+.|.+|++++|++||.+|+   +|||+.
T Consensus        16 FtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav   95 (889)
T COG3280          16 FTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV   95 (889)
T ss_pred             CCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence            4799999999999999999999999999854 779999999999999999999999999999999999999   999998


Q ss_pred             c-cCC
Q psy12953        126 S-FAN  129 (136)
Q Consensus       126 ~-~~~  129 (136)
                      + +.+
T Consensus        96 ~g~~N  100 (889)
T COG3280          96 GGHEN  100 (889)
T ss_pred             ccccC
Confidence            7 443

>TIGR01531 glyc_debranch glycogen debranching enzymye

Probab=99.60  E-value=3e-15  Score=135.29  Aligned_cols=83  Identities=17%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC----CHHHHHHHHHHHHHC-CCcEEE---e
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG----DMHDFEILIEEAHSR-GKPKRT---F  120 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G----t~~~~~~lv~~ah~~-Gi~vil---~  120 (136)
                      .|+|+++.++|++++++|+|.|||+||++.+..++.|++.||..+||.+|    +.++|++||+++|++ ||++|+   +
T Consensus       128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~  207 (1464)
T TIGR01531       128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF  207 (1464)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence            59999999999999999999999999998887789999999999999994    889999999999997 999999   9


Q ss_pred             ccCCCccCCCC
Q psy12953        121 REVTKSFANNQ  131 (136)
Q Consensus       121 nh~~~~~~~~~  131 (136)
                      ||++.++++.+
T Consensus       208 NHTa~ds~Wl~  218 (1464)
T TIGR01531       208 NHTANNSPWLL  218 (1464)
T ss_pred             cccccCCHHHH
Confidence            99999887654

glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.

>PLN03244 alpha-amylase; Provisional

Probab=99.07  E-value=4.7e-10  Score=97.73  Aligned_cols=69  Identities=20%  Similarity=0.255  Sum_probs=59.8

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE  108 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~  108 (136)
                      ....|||.|+.-.+  .+...|+++++.++                            +++|++++++|||++||++||+
T Consensus       399 ~~lrIYE~HvGms~--~e~kv~ty~eF~~~----------------------------vt~fFApssRYGTPeDLK~LVD  448 (872)
T PLN03244        399 ESLRIYECHVGISG--SEPKISSFEEFTEK----------------------------VTNFFAASSRYGTPDDFKRLVD  448 (872)
T ss_pred             CCceEEEEEeeecC--CCCCcccHHHHhhc----------------------------cCcccccCcccCCHHHHHHHHH
Confidence            55679999997754  44557899999885                            6799999999999999999999


Q ss_pred             HHHHCCCcEEE---eccCCCcc
Q psy12953        109 EAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus       109 ~ah~~Gi~vil---~nh~~~~~  127 (136)
                      +||++||+|||   +||.+.+.
T Consensus       449 ~aH~~GI~VILDvV~NH~~~d~  470 (872)
T PLN03244        449 EAHGLGLLVFLDIVHSYAAADE  470 (872)
T ss_pred             HHHHCCCEEEEEecCccCCCcc
Confidence            99999999999   88888764

>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme

Probab=99.00  E-value=1.8e-09  Score=88.81  Aligned_cols=90  Identities=16%  Similarity=0.293  Sum_probs=76.8

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC------HHHH
Q psy12953         30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD------MHDF  103 (136)
Q Consensus        30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt------~~~~  103 (136)
                      ...|..+.....        |++.++.++|+.++++|+|.|++.|+.+.+.+++.|.+.|...+||.+..      .+++
T Consensus         7 ~i~iQTvlsk~~--------G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v   78 (423)
T PF14701_consen    7 SISIQTVLSKWM--------GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDV   78 (423)
T ss_pred             ceEEEEEhhhhc--------CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHH
Confidence            345555555544        99999999999999999999999999999998899999999999999754      3699


Q ss_pred             HHHHHHHH-HCCCcEEE---eccCCCcc
Q psy12953        104 EILIEEAH-SRGKPKRT---FREVTKSF  127 (136)
Q Consensus       104 ~~lv~~ah-~~Gi~vil---~nh~~~~~  127 (136)
                      +++|++++ +.||..|.   +||++.+.
T Consensus        79 ~~~v~~~~~~~~ll~~~DvV~NHtA~nS  106 (423)
T PF14701_consen   79 KEFVKEAEKKYGLLSMTDVVLNHTANNS  106 (423)
T ss_pred             HHHHHHHHHHcCceEEEEEeeccCcCCC
Confidence            99999996 68999999   88887653

>KOG2212|consensus

Probab=98.00  E-value=3.8e-05  Score=62.19  Aligned_cols=90  Identities=10%  Similarity=0.166  Sum_probs=70.9

Q ss_pred             CccccCC-ceEEEEecccccCcCCCCCCCHHHHHHhHH-HHHHcCCcEEEEcCCccCCC-----CC--CCCCccCCCCCC
Q psy12953         24 QKEWWQT-AIMYQIYPRSFRDVNGDGTGDMRGITEKLD-HFVDLGIESLWIQPFYPAGG-----AD--LGYDVSNYVDVD   94 (136)
Q Consensus        24 ~~~w~~~-~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~-~l~~lG~~~I~l~Pi~~~~~-----~~--~gY~~~d~~~vd   94 (136)
                      .+.||+. ..|-.++...+           .++...++ .|.--|+..|..+|+.|.-.     ..  ..|+|..| .++
T Consensus        21 ~t~~~~~R~tmVHLFEWKW-----------~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvSY-KL~   88 (504)
T KOG2212|consen   21 STNTQQGRTTIVHLFEWKW-----------VDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVSY-KLC   88 (504)
T ss_pred             CchhhcCcceEEEEEEeeh-----------HHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccceE-Eee
Confidence            3455554 56666666554           57777765 56669999999999998632     11  26899988 699


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         95 PLFGDMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        95 ~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      .|-|..+||+.||+.|.+-|.|+++   +||++-
T Consensus        89 tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g  122 (504)
T KOG2212|consen   89 TRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCG  122 (504)
T ss_pred             ccCCCHHHHHHHHHHhhccceEEEehhhhhhhcc
Confidence            9999999999999999999999999   999974

>PF14871 GHL6: Hypothetical glycosyl hydrolase 6

Probab=97.96  E-value=1.2e-05  Score=56.70  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=46.4

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+.+++++++|+++|.+.-=...   .+-|-++.....+|.++ .+-|+++|++||++||+|++
T Consensus         3 ~~~~~~lk~~~v~si~i~a~~h~---g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~a   62 (132)
T PF14871_consen    3 EQFVDTLKEAHVNSITIFAKCHG---GYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPA   62 (132)
T ss_pred             HHHHHHHHHhCCCEEEEEccccc---EEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEE
Confidence            45678999999999998432111   23345566566788888 78899999999999999999

>KOG3625|consensus

Probab=97.88  E-value=2e-05  Score=70.13  Aligned_cols=79  Identities=15%  Similarity=0.287  Sum_probs=70.6

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC------CHHHHHHHHHHHHHC-CCcEEE--
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG------DMHDFEILIEEAHSR-GKPKRT--  119 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G------t~~~~~~lv~~ah~~-Gi~vil--  119 (136)
                      .|.+++++.+|.-.++.|+|.|++.|+.+-+.+.+.|...|.-.+++.+.      +.+|.++||+.+|+- ||-.+-  
T Consensus       138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~Dv  217 (1521)
T KOG3625|consen  138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDV  217 (1521)
T ss_pred             cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehh
Confidence            59999999999999999999999999999998889999999999999986      789999999999986 776665  


Q ss_pred             -eccCCCcc
Q psy12953        120 -FREVTKSF  127 (136)
Q Consensus       120 -~nh~~~~~  127 (136)
                       +||++.+.
T Consensus       218 V~NHtAnns  226 (1521)
T KOG3625|consen  218 VYNHTANNS  226 (1521)
T ss_pred             hhhccccCC
Confidence             88876543

>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3

Probab=97.70  E-value=9.6e-05  Score=64.10  Aligned_cols=68  Identities=24%  Similarity=0.356  Sum_probs=48.1

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCC--------CCCCCccCCCC----CCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGA--------DLGYDVSNYVD----VDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~--------~~gY~~~d~~~----vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -.-+.+..+-++++|||..++.|-+.+...        ..||+-+|=+.    -...||+.+||+..++++|+.||+||.
T Consensus       586 N~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvia  665 (809)
T PF02324_consen  586 NVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIA  665 (809)
T ss_dssp             HHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEE
T ss_pred             HHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhh
Confidence            456677789999999999999998887542        36999988655    467899999999999999999999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.

>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function

Probab=97.13  E-value=0.0012  Score=52.65  Aligned_cols=69  Identities=20%  Similarity=0.197  Sum_probs=43.2

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCC--CHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFG--DMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~G--t~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.++.|+++|+|+|++.=-..... +.+-+.+..-+......+  +.+-|+.+|++||++||+|..
T Consensus        17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHA   88 (311)
T PF02638_consen   17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHA   88 (311)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEE
Confidence            456788889999999999999843221110 111111211111111111  357899999999999999998

>PF14872 GHL5: Hypothetical glycoside hydrolase 5

Probab=97.12  E-value=0.0021  Score=55.75  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=73.4

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHH---------------cCCcEEEEcCCccCC------------
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVD---------------LGIESLWIQPFYPAG------------   79 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~---------------lG~~~I~l~Pi~~~~------------   79 (136)
                      --....|.|+|+..-+.+     |++.|+.+...+|++               .|+++|.|+||-+.-            
T Consensus       175 v~~P~nILQiHv~TAsp~-----GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~F  249 (811)
T PF14872_consen  175 VPAPRNILQIHVGTASPE-----GTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEF  249 (811)
T ss_pred             cCCCceeEEEecCCCCCC-----cchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCce
Confidence            344568999999887544     899999887666653               699999999996631            


Q ss_pred             --------------------------------CCCCCCCcc--CCCCCCCCC-CC--HHHHHHHHHHHHH---CCCcEEE
Q psy12953         80 --------------------------------GADLGYDVS--NYVDVDPLF-GD--MHDFEILIEEAHS---RGKPKRT  119 (136)
Q Consensus        80 --------------------------------~~~~gY~~~--d~~~vd~~~-Gt--~~~~~~lv~~ah~---~Gi~vil  119 (136)
                                                      ..+|||++.  ...++||.+ +|  ++|+-+||+.+|.   ..|+||+
T Consensus       250 f~~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIy  329 (811)
T PF14872_consen  250 FSIRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIY  329 (811)
T ss_pred             eeecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEE
Confidence                                            014788754  345566663 33  7999999999998   4799999


Q ss_pred             eccCCCccCCCCC
Q psy12953        120 FREVTKSFANNQG  132 (136)
Q Consensus       120 ~nh~~~~~~~~~~  132 (136)
                        .+...|.++++
T Consensus       330 --DlVyGHADNQ~  340 (811)
T PF14872_consen  330 --DLVYGHADNQA  340 (811)
T ss_pred             --eeecccccchh
Confidence              77777777764

>PF14488 DUF4434: Domain of unknown function (DUF4434)

Probab=97.11  E-value=0.003  Score=46.16  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=47.0

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.+.+++++|+++|.+.=   ....+.-+.+.++..-.-..+..+-+..+.++|.+.||+|++
T Consensus        18 ~~~~W~~~~~~m~~~GidtlIlq~---~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~   83 (166)
T PF14488_consen   18 TPAQWREEFRAMKAIGIDTLILQW---TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFV   83 (166)
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEEE---eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEE
Confidence            346888899999999999999872   111122233444422222236678899999999999999999

>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.0075  Score=50.08  Aligned_cols=74  Identities=15%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCC--CCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         46 GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNY--VDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        46 ~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~--~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .....+=.++.+.++.|+.||||+|+..=.-.... +.+-+.+..=  .-+-..-++.|-|..+|++||++||+|+.
T Consensus        57 ~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~a  133 (418)
T COG1649          57 SRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHA  133 (418)
T ss_pred             CcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeee
Confidence            33446678889999999999999999843322211 0000011000  00001123346799999999999999999

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3

Probab=96.32  E-value=0.0097  Score=45.36  Aligned_cols=63  Identities=16%  Similarity=0.186  Sum_probs=42.7

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ...+.++.++++|+++|-|.-.++... ...++      .+++  ...+.|+++|++|+++||+||++-|..
T Consensus        22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~~~gi~vild~h~~   85 (281)
T PF00150_consen   22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQAYGIYVILDLHNA   85 (281)
T ss_dssp             SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred             CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            566778999999999999966542211 11111      0111  225789999999999999999966654

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....

>PLN03059 beta-galactosidase; Provisional

Probab=96.05  E-value=0.032  Score=50.00  Aligned_cols=61  Identities=13%  Similarity=0.130  Sum_probs=44.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -.-.-+.++|..+|++|+|+|..==++..-+...|  ..||       .+..||.++++.|++.||.||+
T Consensus        56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G--~~dF-------~G~~DL~~Fl~la~e~GLyvil  116 (840)
T PLN03059         56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--NYYF-------EDRYDLVKFIKVVQAAGLYVHL  116 (840)
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCC--eeec-------cchHHHHHHHHHHHHcCCEEEe
Confidence            34567888899999999999986333222111122  3333       4578999999999999999999

>PRK09936 hypothetical protein; Provisional

Probab=96.04  E-value=0.086  Score=41.88  Aligned_cols=70  Identities=19%  Similarity=0.113  Sum_probs=50.0

Q ss_pred             cCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCH-HHHHHH
Q psy12953         28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDM-HDFEIL  106 (136)
Q Consensus        28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~-~~~~~l  106 (136)
                      -.+.++||-.-+.-.       =+-..+.+.+..++++|+++|.+.=.        +|.       |+.||+. .-|.+.
T Consensus        20 a~~g~F~Qp~n~d~~-------~~~~qWq~~~~~~~~~G~~tLivQWt--------~yG-------~~~fg~~~g~La~~   77 (296)
T PRK09936         20 AMKGIFYQPQNRDSQ-------VTDTQWQGLWSQLRLQGFDTLVVQWT--------RYG-------DADFGGQRGWLAKR   77 (296)
T ss_pred             ccccceeccccccCC-------CCHHHHHHHHHHHHHcCCcEEEEEee--------ecc-------CCCcccchHHHHHH
Confidence            356778886554322       34567788888999999999988521        221       2255554 469999


Q ss_pred             HHHHHHCCCcEEE
Q psy12953        107 IEEAHSRGKPKRT  119 (136)
Q Consensus       107 v~~ah~~Gi~vil  119 (136)
                      +++|++.||+|.+
T Consensus        78 l~~A~~~Gl~v~v   90 (296)
T PRK09936         78 LAAAQQAGLKLVV   90 (296)
T ss_pred             HHHHHHcCCEEEE
Confidence            9999999999999

>PRK14508 4-alpha-glucanotransferase; Provisional

Probab=95.84  E-value=0.027  Score=47.85  Aligned_cols=57  Identities=28%  Similarity=0.418  Sum_probs=49.5

Q ss_pred             CCCCCHH-HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         47 DGTGDMR-GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        47 ~~~g~~~-~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      -|.|||- ++.+.++.+++.|++.+.++|+.+....+++|.+.+=+..||-|=+.+.+
T Consensus        20 ~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l~~l   77 (497)
T PRK14508         20 YGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDLEAL   77 (497)
T ss_pred             CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcChhhc
Confidence            4579995 99999999999999999999999988777899999988988888765433

>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3

Probab=95.79  E-value=0.013  Score=47.02  Aligned_cols=59  Identities=10%  Similarity=0.135  Sum_probs=38.3

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+.+.++|..+|++|+|+|..-=.+..-+...|  ..||.       ...++.++++.|+++||.|++
T Consensus        23 ~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df~-------g~~dl~~f~~~a~~~gl~vil   81 (319)
T PF01301_consen   23 PEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDFT-------GNRDLDRFLDLAQENGLYVIL   81 (319)
T ss_dssp             GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B---S-------GGG-HHHHHHHHHHTT-EEEE
T ss_pred             hhHHHHHHHHHHhCCcceEEEeccccccCCCCC--ccccc-------chhhHHHHHHHHHHcCcEEEe
Confidence            456778899999999999998544332221122  45552       247899999999999999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....

>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3

Probab=95.53  E-value=0.054  Score=43.83  Aligned_cols=62  Identities=13%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCCCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFANNQ  131 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~~~  131 (136)
                      .+.++-||+.|+|.|-|--.. .|..             .-+-+.++..++.++|++.||+|+++-|.|-...++.
T Consensus        27 ~d~~~ilk~~G~N~vRlRvwv-~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg   88 (332)
T PF07745_consen   27 KDLFQILKDHGVNAVRLRVWV-NPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPG   88 (332)
T ss_dssp             --HHHHHHHTT--EEEEEE-S-S-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTT
T ss_pred             CCHHHHHHhcCCCeEEEEecc-CCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCC
Confidence            456779999999999986533 2211             3345678999999999999999999888776665544

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=95.36  E-value=0.041  Score=51.40  Aligned_cols=60  Identities=22%  Similarity=0.291  Sum_probs=51.5

Q ss_pred             CCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC----CCCCccCCCCCCCCCCCHHHHH
Q psy12953         45 NGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD----LGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        45 ~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~----~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      .+-|.|||.++.+.++.+++.|.+.+.|+|+.+....+    ++|.+.+=+..||-|=+++.+.
T Consensus       738 ~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l~  801 (1221)
T PRK14510        738 RPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLLP  801 (1221)
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhcc
Confidence            34567999999999999999999999999999876555    8999999889999988876543

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3

Probab=95.21  E-value=0.093  Score=41.37  Aligned_cols=69  Identities=16%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      +.+.+..++-+|..+++|+..+.+--=+....   .=...|+....+.    .++++||+-|+++|++|+| .|+-.
T Consensus        28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~---~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~~~~~   97 (273)
T PF10566_consen   28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWE---KDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWYHSET   97 (273)
T ss_dssp             SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS-----TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEEECCH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEecccccccc---ccccccccccCCc----cCHHHHHHHHHHcCCCEEEEEeCCc
Confidence            47889999999999999999999932222110   0124555555555    6899999999999999999 55543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.

>PLN02950 4-alpha-glucanotransferase

Probab=95.16  E-value=0.082  Score=48.03  Aligned_cols=58  Identities=16%  Similarity=0.286  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-----CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         48 GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-----ADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        48 ~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-----~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      |.|||.++.+.++.+++.|.+.+.|+|+.+...     .+.+|.+.+=+..||-|=+++++.+
T Consensus       278 GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~~  340 (909)
T PLN02950        278 GVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSE  340 (909)
T ss_pred             CeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHHh
Confidence            579999999999999999999999999988653     1348999999999999998877643

>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3

Probab=94.98  E-value=0.042  Score=46.62  Aligned_cols=61  Identities=21%  Similarity=0.385  Sum_probs=38.1

Q ss_pred             CCCCCCH-HHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         46 GDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        46 ~~~~g~~-~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      +-|.||| .++.+.++.+++.|+..+.|.|+.+... .+++|.+.+=+.+||-|=+.+++.+.
T Consensus        11 ~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~   73 (496)
T PF02446_consen   11 SWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEF   73 (496)
T ss_dssp             --SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHT
T ss_pred             CCceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhc
Confidence            3478999 9999999999999999999999998865 44599999999999999887665443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.

>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex)

Probab=94.88  E-value=0.17  Score=40.80  Aligned_cols=67  Identities=7%  Similarity=0.092  Sum_probs=45.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC---------C---CCCCHHHHHHHHHHHHHCCCcE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD---------P---LFGDMHDFEILIEEAHSRGKPK  117 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd---------~---~~Gt~~~~~~lv~~ah~~Gi~v  117 (136)
                      -+.+.+++.|+.++..++|.+++---   ...+|......|-.+-         .   .+=|.+|+++||+-|+++||+|
T Consensus        15 ~~~~~lk~~id~ma~~KlN~lhlHLt---D~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~v   91 (329)
T cd06568          15 FTVAEVKRYIDLLALYKLNVLHLHLT---DDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITV   91 (329)
T ss_pred             cCHHHHHHHHHHHHHhCCcEEEEEee---cCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            46788999999999999999888321   1011112222221111         1   1227899999999999999999


Q ss_pred             EE
Q psy12953        118 RT  119 (136)
Q Consensus       118 il  119 (136)
                      |-
T Consensus        92 IP   93 (329)
T cd06568          92 VP   93 (329)
T ss_pred             EE
Confidence            98

SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.

>PLN03236 4-alpha-glucanotransferase; Provisional

Probab=94.87  E-value=0.093  Score=46.65  Aligned_cols=77  Identities=17%  Similarity=0.387  Sum_probs=58.0

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-C---C-CCCCccCCCCCCCCCCCHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-A---D-LGYDVSNYVDVDPLFGDMH  101 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~---~-~gY~~~d~~~vd~~~Gt~~  101 (136)
                      |-...++-+++  +.....+-|.|||.++.+.++.+++.|.+.+.|+|+.+... .   + ++|.+.+=+..||-|=+++
T Consensus        59 ~R~aGill~l~--SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle  136 (745)
T PLN03236         59 WKGSGMALPVF--SLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLK  136 (745)
T ss_pred             hhhheeeeccc--cCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHH
Confidence            44555555543  22223345679999999999999999999999999988752 2   3 5899999999999998877


Q ss_pred             HHHH
Q psy12953        102 DFEI  105 (136)
Q Consensus       102 ~~~~  105 (136)
                      .+.+
T Consensus       137 ~L~e  140 (745)
T PLN03236        137 ELVE  140 (745)
T ss_pred             Hhhh
Confidence            6643

>PRK11052 malQ 4-alpha-glucanotransferase; Provisional

Probab=94.74  E-value=0.11  Score=45.96  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=53.7

Q ss_pred             CCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccC----CCCCCCCCccCCCCCCCCCCCHHHHHHHH
Q psy12953         45 NGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA----GGADLGYDVSNYVDVDPLFGDMHDFEILI  107 (136)
Q Consensus        45 ~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~----~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv  107 (136)
                      .+-|.|||.++.+.++.+++.|.+.+.|.|+...    +..+++|.+.+=+.+||-|=+++.+.++.
T Consensus       157 ~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~  223 (695)
T PRK11052        157 HNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ  223 (695)
T ss_pred             CCCCeecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence            3556899999999999999999999999999963    34578899999999999999888776654

>PLN02635 disproportionating enzyme

Probab=94.68  E-value=0.099  Score=44.91  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             EEEEecccccCcCCCCCCCHHHHH-HhHHHHHHcCCcEEEEcCCccCCC----CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         33 MYQIYPRSFRDVNGDGTGDMRGIT-EKLDHFVDLGIESLWIQPFYPAGG----ADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        33 iY~v~~~~f~~~~~~~~g~~~~l~-~~l~~l~~lG~~~I~l~Pi~~~~~----~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      ---+++-+..  ..-|.|||-+.. +.++.+++.|.+.+.++|+.+...    .+++|.+.+=+..||-|=+++++.
T Consensus        31 Gvll~l~SLp--s~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~NPlyI~le~L~  105 (538)
T PLN02635         31 GILLHPTSLP--GPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGNTLLISLEELV  105 (538)
T ss_pred             EEEEccccCC--CCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccChhhcCHHhhh
Confidence            3334444444  235679998865 789999999999999999988743    678999999888888887766543

>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=94.38  E-value=0.18  Score=40.78  Aligned_cols=72  Identities=13%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC-------CCCCHHHHHHHHHHHHHCCCcEEE---
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP-------LFGDMHDFEILIEEAHSRGKPKRT---  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-------~~Gt~~~~~~lv~~ah~~Gi~vil---  119 (136)
                      =+.+.+++.++.++..++|.+++-   -....+|.+....|-.+-.       .+=|.+|++++|+-|.++||.||-   
T Consensus        15 ~~~~~ik~~Id~ma~~KlN~lh~H---ltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID   91 (348)
T cd06562          15 LSVDSIKRTIDAMAYNKLNVLHWH---ITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID   91 (348)
T ss_pred             CCHHHHHHHHHHHHHhCCcEEEEe---EEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc
Confidence            457888999999999999998872   0011112222222222111       112789999999999999999999   


Q ss_pred             -eccCC
Q psy12953        120 -FREVT  124 (136)
Q Consensus       120 -~nh~~  124 (136)
                       +-|+.
T Consensus        92 ~PGH~~   97 (348)
T cd06562          92 TPGHTG   97 (348)
T ss_pred             CchhhH
Confidence             66653

The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in

>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3

Probab=94.36  E-value=0.13  Score=41.64  Aligned_cols=63  Identities=11%  Similarity=-0.058  Sum_probs=41.9

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+.++-+|++|+.-+.|..-+..+..-|.=..++|..++... ..+=+++|+++|+++||++.+
T Consensus        94 dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~  156 (346)
T PF01120_consen   94 DQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL  156 (346)
T ss_dssp             HHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE
T ss_pred             HHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE
Confidence            455678999999999998887765433333455666666333 357899999999999999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....

>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=94.28  E-value=0.26  Score=41.33  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=47.9

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEc-------C--CccCCC-----CCCCCCccCCCCCCCCCC-------------CHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQ-------P--FYPAGG-----ADLGYDVSNYVDVDPLFG-------------DMHD  102 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~-------P--i~~~~~-----~~~gY~~~d~~~vd~~~G-------------t~~~  102 (136)
                      -+...+++.|+.++..++|.+++-       |  +-..+.     ...++...+...+.|.+|             |.+|
T Consensus        19 ~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~d   98 (445)
T cd06569          19 HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRAD   98 (445)
T ss_pred             CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHH
Confidence            467889999999999999988872       1  111111     111222222222222222             6899


Q ss_pred             HHHHHHHHHHCCCcEEE----eccCC
Q psy12953        103 FEILIEEAHSRGKPKRT----FREVT  124 (136)
Q Consensus       103 ~~~lv~~ah~~Gi~vil----~nh~~  124 (136)
                      ++++|+-|+++||.||-    +-|+.
T Consensus        99 i~eiv~yA~~rgI~VIPEID~PGH~~  124 (445)
T cd06569          99 YIEILKYAKARHIEVIPEIDMPGHAR  124 (445)
T ss_pred             HHHHHHHHHHcCCEEEEccCCchhHH
Confidence            99999999999999998    66644

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D

Probab=93.72  E-value=0.29  Score=38.68  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=38.7

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCC----CCCCCCc--------cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGG----ADLGYDV--------SNYVDVDPLFGDMHDFEILIEEAHSRGKPKR  118 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~----~~~gY~~--------~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi  118 (136)
                      +..+...-|+..++.|||.|.+.=+.+...    ..-|+.+        .||..+||.|  .+.+.+.|+.|.++||.+.
T Consensus        28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~  105 (289)
T PF13204_consen   28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA  105 (289)
T ss_dssp             -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE
Confidence            345666669999999999999855444321    1112222        4666666555  5889999999999999997


Q ss_pred             E
Q psy12953        119 T  119 (136)
Q Consensus       119 l  119 (136)
                      |
T Consensus       106 l  106 (289)
T PF13204_consen  106 L  106 (289)
T ss_dssp             E
T ss_pred             E
Confidence            7

>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins

Probab=93.66  E-value=0.31  Score=38.70  Aligned_cols=61  Identities=13%  Similarity=0.057  Sum_probs=43.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEc--CCccCCCCCCCCCccCCCCCC--CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQ--PFYPAGGADLGYDVSNYVDVD--PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~--Pi~~~~~~~~gY~~~d~~~vd--~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+.+.+++.++.++.+|+|.++|=  --++.+         ++-.+.  ...=|.+|++++++-|+++||.||-
T Consensus        14 ~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~---------~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIP   78 (301)
T cd06565          14 PKVSYLKKLLRLLALLGANGLLLYYEDTFPYE---------GEPEVGRMRGAYTKEEIREIDDYAAELGIEVIP   78 (301)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEEecceecC---------CCcccccCCCCcCHHHHHHHHHHHHHcCCEEEe
Confidence            467889999999999999998872  111111         111111  1122689999999999999999998

GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>smart00812 Alpha_L_fucos Alpha-L-fucosidase

Probab=93.44  E-value=0.32  Score=40.07  Aligned_cols=63  Identities=19%  Similarity=0.058  Sum_probs=49.0

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+.++-+|++|+.-+.|..=+..+..-|.=..++|..++... ..+=+++|+++|+++||++-+
T Consensus        84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~  146 (384)
T smart00812       84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL  146 (384)
T ss_pred             HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE
Confidence            445678999999999998887665433333355777777655 568899999999999999999

O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.

>PRK10076 pyruvate formate lyase II activase; Provisional

Probab=92.83  E-value=1.1  Score=33.98  Aligned_cols=66  Identities=20%  Similarity=0.299  Sum_probs=43.9

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCc--cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDV--SNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~--~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -..+.+..+.++++|+..+.|.|.+..+..  .|.-  .+|.--+...=+.++++++.+.++++|+++.+
T Consensus       144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g~~--Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i  211 (213)
T PRK10076        144 RENMQQALDVLIPLGIKQIHLLPFHQYGEP--KYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV  211 (213)
T ss_pred             HHHHHHHHHHHHHcCCceEEEecCCccchh--HHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence            345666667888889999999998876431  1111  11211222223578899999999999999865

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=92.57  E-value=0.6  Score=36.11  Aligned_cols=51  Identities=27%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccC
Q psy12953         57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFA  128 (136)
Q Consensus        57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~  128 (136)
                      +-+++++++||++|.++-=+-.-                   +.++..++|+.++++|++|.-  -++..++
T Consensus        75 ~Yl~~~k~lGf~~IEiS~G~~~i-------------------~~~~~~rlI~~~~~~g~~v~~--EvG~K~~  125 (237)
T TIGR03849        75 EYLNECDELGFEAVEISDGSMEI-------------------SLEERCNLIERAKDNGFMVLS--EVGKKSP  125 (237)
T ss_pred             HHHHHHHHcCCCEEEEcCCccCC-------------------CHHHHHHHHHHHHhCCCeEec--cccccCC
Confidence            34569999999999997532111                   146888999999999999988  5554444

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3

Probab=92.46  E-value=0.17  Score=41.01  Aligned_cols=55  Identities=15%  Similarity=0.163  Sum_probs=36.7

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccC-CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ..+.+-++-++++|+|+|-|..+.=. -+...|  ..||          +.|.++++.|+++||+|+|
T Consensus        10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG--~ydF----------~~lD~~l~~a~~~Gi~viL   65 (374)
T PF02449_consen   10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEG--QYDF----------SWLDRVLDLAAKHGIKVIL   65 (374)
T ss_dssp             CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTT--B-------------HHHHHHHHHHHCTT-EEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEechhhccCCCC--eeec----------HHHHHHHHHHHhccCeEEE
Confidence            46777899999999999999776311 010111  3333          5699999999999999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.

>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3

Probab=92.27  E-value=0.17  Score=40.32  Aligned_cols=67  Identities=15%  Similarity=0.207  Sum_probs=41.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC------C----CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD------P----LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd------~----~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+.+.+++.|+.++..++|.+++--- +.  .++.+....|-.+.      +    .+=|.+|++++|+.|+++||+||-
T Consensus        15 ~~~~~ik~~id~ma~~k~N~lhlhl~-D~--~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIP   91 (351)
T PF00728_consen   15 FSVDTIKRLIDQMAYYKLNVLHLHLS-DD--QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIP   91 (351)
T ss_dssp             B-HHHHHHHHHHHHHTT-SEEEEEEE-SS--TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEEe-cC--CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceee
Confidence            56788999999999999999988221 00  01111111111111      0    033689999999999999999998

2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....

>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides

Probab=92.27  E-value=0.47  Score=37.58  Aligned_cols=67  Identities=13%  Similarity=0.154  Sum_probs=44.6

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-----------CCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-----------PLFGDMHDFEILIEEAHSRGKPKR  118 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-----------~~~Gt~~~~~~lv~~ah~~Gi~vi  118 (136)
                      -+.+.+++.++.++..++|.+++-=-   ...++.+....|-.+-           ..+=|.+|++++++-|+++||+||
T Consensus        13 ~~~~~lk~~id~ma~~K~N~lhlHl~---D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi   89 (303)
T cd02742          13 LSVESIKRTIDVLARYKINTFHWHLT---DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI   89 (303)
T ss_pred             cCHHHHHHHHHHHHHhCCcEEEEeee---cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence            46788999999999999999877211   0001111222221111           112268999999999999999999


Q ss_pred             E
Q psy12953        119 T  119 (136)
Q Consensus       119 l  119 (136)
                      -
T Consensus        90 P   90 (303)
T cd02742          90 P   90 (303)
T ss_pred             E
Confidence            8

These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.

>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose

Probab=92.14  E-value=0.47  Score=37.45  Aligned_cols=61  Identities=15%  Similarity=0.233  Sum_probs=43.6

Q ss_pred             CCHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-+++.+.++.+++.|  ++.++|-.=+...     |.-.|| ..| .+|.+   .++|++++|++|+++++
T Consensus        21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~-----~~~~~f-~~d~~~FPd---~~~~i~~l~~~G~~~~~   84 (308)
T cd06593          21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKE-----FQWCDF-EFDPDRFPD---PEGMLSRLKEKGFKVCL   84 (308)
T ss_pred             CCHHHHHHHHHHHHHcCCCeeEEEEecccccC-----Ccceee-EECcccCCC---HHHHHHHHHHCCCeEEE
Confidence            35578888899999999  7788887655321     111232 334 35653   68999999999999999

YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.

>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase

Probab=91.80  E-value=0.73  Score=36.49  Aligned_cols=59  Identities=19%  Similarity=0.266  Sum_probs=41.9

Q ss_pred             CCHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+++.+.++.+++.|  ++.|+|-.=+...   .    .|| ..|+ +|-   +.++|++++|++|+++++
T Consensus        27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~---~----g~f-~~d~~~FP---dp~~mi~~l~~~G~k~~l   88 (303)
T cd06592          27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC---Y----GDF-DFDPTKFP---DPKGMIDQLHDLGFRVTL   88 (303)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc---C----Ccc-ccChhhCC---CHHHHHHHHHHCCCeEEE
Confidence            45678888899999988  5688886533221   1    122 3333 555   478999999999999999

Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins

Probab=91.15  E-value=1.2  Score=35.69  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEE--cC-----CccCCC-CCCC-CCcc------CCCC--CCCCCCCHHHHHHHHHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWI--QP-----FYPAGG-ADLG-YDVS------NYVD--VDPLFGDMHDFEILIEEAHS  112 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l--~P-----i~~~~~-~~~g-Y~~~------d~~~--vd~~~Gt~~~~~~lv~~ah~  112 (136)
                      =+...+++.|+.++..++|.+++  .-     +-..+. ...| |...      .+..  -...+=|.+|++++|+-|++
T Consensus        14 ~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~   93 (326)
T cd06564          14 YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKD   93 (326)
T ss_pred             CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Confidence            45788999999999999999988  11     111110 0000 0000      0000  11122278999999999999


Q ss_pred             CCCcEEE
Q psy12953        113 RGKPKRT  119 (136)
Q Consensus       113 ~Gi~vil  119 (136)
                      +||+||-
T Consensus        94 rgI~vIP  100 (326)
T cd06564          94 RGVNIIP  100 (326)
T ss_pred             cCCeEec
Confidence            9999998

Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional

Probab=91.11  E-value=0.34  Score=46.74  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=49.1

Q ss_pred             CCCCCCHHHHHHhHHHHHHcCCcEEEEcCCcc---C-CCCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         46 GDGTGDMRGITEKLDHFVDLGIESLWIQPFYP---A-GGADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        46 ~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~---~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      +-|.|||.++.+.++.+++.|.+.|.|.|+..   . +..+++|.+.+=+..||-|=+.+++.+
T Consensus       187 ~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alNPlYIdle~l~e  250 (1693)
T PRK14507        187 NWGIGDFGDLGRLVRDAALRGASFLGLSPLHALFPTDPAKASPYSPSSRLFLNTLYIDVEAVPD  250 (1693)
T ss_pred             CCCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcCcccccccChHhcCHhhccc
Confidence            34579999999999999999999999999982   2 245789999998888888877655433

>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=91.05  E-value=0.96  Score=36.69  Aligned_cols=70  Identities=10%  Similarity=-0.009  Sum_probs=43.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcC---------CccCCC--CCCCCCccC-------CCCCCC--CCCCHHHHHHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQP---------FYPAGG--ADLGYDVSN-------YVDVDP--LFGDMHDFEILIEE  109 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~P---------i~~~~~--~~~gY~~~d-------~~~vd~--~~Gt~~~~~~lv~~  109 (136)
                      =+.+.+++.++.++..++|.+++--         +-..|.  ...+|...+       .....+  .+=|.+|++++|+-
T Consensus        15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y   94 (357)
T cd06563          15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAY   94 (357)
T ss_pred             cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHH
Confidence            3578889999999999999998721         111111  001111111       001111  11268999999999


Q ss_pred             HHHCCCcEEE
Q psy12953        110 AHSRGKPKRT  119 (136)
Q Consensus       110 ah~~Gi~vil  119 (136)
                      |+++||+||-
T Consensus        95 A~~rgI~VIP  104 (357)
T cd06563          95 AAERGITVIP  104 (357)
T ss_pred             HHHcCCEEEE
Confidence            9999999999

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=90.92  E-value=0.58  Score=31.91  Aligned_cols=46  Identities=28%  Similarity=0.373  Sum_probs=33.1

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      -....+.++.+.++|+..+|+.|=                         ++-+++++.|+++||+++=.|-
T Consensus        65 ~~~~~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vigp~C  110 (116)
T PF13380_consen   65 PDKVPEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVIGPNC  110 (116)
T ss_dssp             HHHHHHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEEESS-
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEEeCCc
Confidence            456677889999999999999883                         3457888899999999986443

>TIGR03356 BGL beta-galactosidase

Probab=90.77  E-value=0.85  Score=37.98  Aligned_cols=67  Identities=12%  Similarity=0.142  Sum_probs=45.5

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      ..-+....+-++-+++||++++-++=-+..-... |..     .  ..-...+-.++++++|+++||++|+ .+|-
T Consensus        50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~-g~~-----~--~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf  117 (427)
T TIGR03356        50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPE-GTG-----P--VNPKGLDFYDRLVDELLEAGIEPFVTLYHW  117 (427)
T ss_pred             ccHHHhHHHHHHHHHHcCCCeEEcccchhhcccC-CCC-----C--cCHHHHHHHHHHHHHHHHcCCeeEEeeccC
Confidence            3457788888999999999999885433221110 100     0  1112346689999999999999999 6664

>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin

Probab=90.60  E-value=2.1  Score=34.28  Aligned_cols=67  Identities=13%  Similarity=0.186  Sum_probs=44.1

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCC-----CCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDV-----DPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~v-----d~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+.+.+.+.|+.++..++|.+++-=.   ...++.+....|-.+     ...+=|.+|++++++-|.++||+||-
T Consensus        15 ~~~~~ik~~Id~ma~~KlN~lh~Hlt---Dd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIP   86 (311)
T cd06570          15 IPVAVIKRQLDAMASVKLNVFHWHLT---DDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVP   86 (311)
T ss_pred             cCHHHHHHHHHHHHHhCCeEEEEEEe---cCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence            45788999999999999997776210   000111111122111     11123789999999999999999998

Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.

>PRK01060 endonuclease IV; Provisional

Probab=90.37  E-value=1.3  Score=34.04  Aligned_cols=53  Identities=11%  Similarity=0.107  Sum_probs=38.4

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPK  117 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~v  117 (136)
                      +.++.+.++.++++|++.|.|.+--+.     .        ..+..-+.++++++.+.+.++|+++
T Consensus        11 ~~~~~~~l~~~~~~G~d~vEl~~~~p~-----~--------~~~~~~~~~~~~~lk~~~~~~gl~~   63 (281)
T PRK01060         11 AGGLEGAVAEAAEIGANAFMIFTGNPQ-----Q--------WKRKPLEELNIEAFKAACEKYGISP   63 (281)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCCC-----C--------CcCCCCCHHHHHHHHHHHHHcCCCC
Confidence            345788899999999999998652111     1        1111236788999999999999993

>PRK14582 pgaB outer membrane N-deacetylase; Provisional

Probab=90.32  E-value=1.4  Score=38.93  Aligned_cols=71  Identities=14%  Similarity=0.159  Sum_probs=44.1

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC---CCCCCCccCCCCCCCCCCCHHHHHH-HHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG---ADLGYDVSNYVDVDPLFGDMHDFEI-LIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~---~~~gY~~~d~~~vd~~~Gt~~~~~~-lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .+-+.+...|+.++++|+|+|+|..+.+...   .+.-|-+.++-.+     -.+-|.. .-+.+|++|++|.. +|...
T Consensus       331 qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~-----r~d~f~~~aw~l~~r~~v~v~AWmp~~~  405 (671)
T PRK14582        331 QQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPM-----RADLFNRVAWQLRTRAGVNVYAWMPVLS  405 (671)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcccccc-----ccCCcCHHHHHHHHhhCCEEEEecccee
Confidence            4456788889999999999999988755432   1223333333222     1112222 22339999999999 55554


Q ss_pred             C
Q psy12953        125 K  125 (136)
Q Consensus       125 ~  125 (136)
                      .
T Consensus       406 ~  406 (671)
T PRK14582        406 F  406 (671)
T ss_pred             e
Confidence            4

>KOG0496|consensus

Probab=90.21  E-value=0.89  Score=39.83  Aligned_cols=61  Identities=13%  Similarity=0.062  Sum_probs=44.6

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-.-+.+++...|++|+++|..-=.+..-+...|         .-.|.++-||.+|++++|+.|+-|+|
T Consensus        46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g---------~y~FsG~~DlvkFikl~~~~GLyv~L  106 (649)
T KOG0496|consen   46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPG---------KYDFSGRYDLVKFIKLIHKAGLYVIL  106 (649)
T ss_pred             CChhhhHHHHHHHHhcCCceeeeeeecccccCCCC---------cccccchhHHHHHHHHHHHCCeEEEe
Confidence            45567788889999999999986443332111111         11356788999999999999999999

>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]

Probab=89.91  E-value=1.9  Score=34.89  Aligned_cols=66  Identities=12%  Similarity=0.139  Sum_probs=40.0

Q ss_pred             HHhHHHHHHcCCcEEEEcCCcc-CCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYP-AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN  129 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~-~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~  129 (136)
                      .+.+.-||+.||+.|-|-=... ..+.+.||...        .++.+.-.++.++|++.||||+++-|.+--+.+
T Consensus        66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggG--------nnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaD  132 (403)
T COG3867          66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGG--------NNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWAD  132 (403)
T ss_pred             HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCC--------cchHHHHHHHHHHHHhcCcEEEeeccchhhccC
Confidence            4457789999999987742211 11122222211        122344556778889999999997787654443

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=89.89  E-value=0.75  Score=35.74  Aligned_cols=45  Identities=20%  Similarity=0.130  Sum_probs=32.9

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-+++++++||++|.++-=+-.-                   +.++..++|+.+++.|++|+-
T Consensus        87 ~~yl~~~k~lGf~~IEiSdGti~l-------------------~~~~r~~~I~~~~~~Gf~v~~  131 (244)
T PF02679_consen   87 DEYLEECKELGFDAIEISDGTIDL-------------------PEEERLRLIRKAKEEGFKVLS  131 (244)
T ss_dssp             HHHHHHHHHCT-SEEEE--SSS----------------------HHHHHHHHHHHCCTTSEEEE
T ss_pred             HHHHHHHHHcCCCEEEecCCceeC-------------------CHHHHHHHHHHHHHCCCEEee
Confidence            455789999999999997522111                   147889999999999999987

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>PTZ00445 p36-lilke protein; Provisional

Probab=89.17  E-value=2.2  Score=32.60  Aligned_cols=58  Identities=17%  Similarity=0.098  Sum_probs=39.0

Q ss_pred             HHHhHHHHHHcCCcEEEE------cCCccCCCCCCCCCccCCCCCCCCCCC--HHHHHHHHHHHHHCCCcEEE
Q psy12953         55 ITEKLDHFVDLGIESLWI------QPFYPAGGADLGYDVSNYVDVDPLFGD--MHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        55 l~~~l~~l~~lG~~~I~l------~Pi~~~~~~~~gY~~~d~~~vd~~~Gt--~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .....+.|++.||.+|..      .+++     +.||.-.+  .-+.++++  ..+|+.+++++++.||+|++
T Consensus        31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~H-----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V   96 (219)
T PTZ00445         31 ADKFVDLLNECGIKVIASDFDLTMITKH-----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV   96 (219)
T ss_pred             HHHHHHHHHHcCCeEEEecchhhhhhhh-----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence            333467899999999987      2222     23433332  22333332  35799999999999999999

>KOG1065|consensus

Probab=88.94  E-value=2.6  Score=37.99  Aligned_cols=63  Identities=16%  Similarity=0.309  Sum_probs=45.4

Q ss_pred             CCHHHHHHhHHHHHHcCCc--EEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         50 GDMRGITEKLDHFVDLGIE--SLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~--~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      ..++.+.+..++.+++|+.  .+|.-=-+...       -.||+.=+-.|++   ++++++.+|++|+|+++..|
T Consensus       308 ~nls~~~dvv~~~~~agiPld~~~~DiDyMd~-------ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliid  372 (805)
T KOG1065|consen  308 KNLSVVRDVVENYRAAGIPLDVIVIDIDYMDG-------YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIID  372 (805)
T ss_pred             ccHHHHHHHHHHHHHcCCCcceeeeehhhhhc-------ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeC
Confidence            6788999999999999987  66654322221       3455433445665   99999999999999999333

>PLN02849 beta-glucosidase

Probab=88.52  E-value=3.8  Score=35.05  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=44.5

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||+++--++=-+..-..+ |-.     .+  .-...+=.++||++++++||+-++ ..|-.
T Consensus        76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~-G~g-----~v--N~~gl~fY~~lid~l~~~GI~P~VTL~H~d  143 (503)
T PLN02849         76 DGYHKYKEDVKLMVETGLDAFRFSISWSRLIPN-GRG-----SV--NPKGLQFYKNFIQELVKHGIEPHVTLFHYD  143 (503)
T ss_pred             cHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcC-CCC-----CC--CHHHHHHHHHHHHHHHHcCCeEEEeecCCC
Confidence            347777888999999999998875332221100 100     11  122345589999999999999999 66653

>PRK15452 putative protease; Provisional

Probab=88.10  E-value=2.3  Score=35.75  Aligned_cols=60  Identities=13%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~  125 (136)
                      |++..+.    ..-+.|+++|++..---+..    ....+|        +.+++++.++.||++|.+|.+ .|....
T Consensus        11 g~~e~l~----aAi~~GADaVY~G~~~~~~R----~~~~~f--------~~edl~eav~~ah~~g~kvyvt~n~i~~   71 (443)
T PRK15452         11 GTLKNMR----YAFAYGADAVYAGQPRYSLR----VRNNEF--------NHENLALGINEAHALGKKFYVVVNIAPH   71 (443)
T ss_pred             CCHHHHH----HHHHCCCCEEEECCCccchh----hhccCC--------CHHHHHHHHHHHHHcCCEEEEEecCcCC
Confidence            5555544    44578999999955311110    001223        468999999999999999999 665443

>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea

Probab=87.68  E-value=1.1  Score=36.56  Aligned_cols=55  Identities=9%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .++....+.|+..++.||+.|+.+=..  +..+    ..+         ..++|++|++.||++||+|++
T Consensus        11 ~~~~~~~~yi~~a~~~Gf~~iFTSL~i--pe~~----~~~---------~~~~~~~l~~~a~~~~~~v~~   65 (357)
T PF05913_consen   11 SSFEENKAYIEKAAKYGFKRIFTSLHI--PEDD----PED---------YLERLKELLKLAKELGMEVIA   65 (357)
T ss_dssp             S-HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEECCCCc--CCCC----HHH---------HHHHHHHHHHHHHHCCCEEEE
Confidence            367788888999999999999886221  1110    111         247899999999999999999

The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=87.61  E-value=3.1  Score=33.02  Aligned_cols=64  Identities=13%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFA  128 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~  128 (136)
                      +...++..+...+.+++|+++|.+.|++-....              .   .+-++++-+.+.+-++.+|++|..+....
T Consensus        82 ~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~--------------~---~gl~~hf~~ia~a~~lPvilYN~P~~tg~  144 (299)
T COG0329          82 SNSTAEAIELAKHAEKLGADGILVVPPYYNKPS--------------Q---EGLYAHFKAIAEAVDLPVILYNIPSRTGV  144 (299)
T ss_pred             CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC--------------h---HHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence            355788888999999999999999988754321              1   12344444444444888999887666544


Q ss_pred             C
Q psy12953        129 N  129 (136)
Q Consensus       129 ~  129 (136)
                      +
T Consensus       145 ~  145 (299)
T COG0329         145 D  145 (299)
T ss_pred             C
Confidence            3

>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase

Probab=87.49  E-value=2.5  Score=32.74  Aligned_cols=61  Identities=23%  Similarity=0.352  Sum_probs=42.4

Q ss_pred             CCHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-+++.+.++.+++.|  +++|+|-.-+.....+.+      ...|+ +|.   +.++|++.+|++|++|++
T Consensus        21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~------~~~d~~~Fp---dp~~~i~~l~~~g~~~~~   84 (265)
T cd06589          21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFT------FDWDAGKFP---NPKSMIDELHDNGVKLVL   84 (265)
T ss_pred             CCHHHHHHHHHHHHHcCCCccEEEECcccccCCceee------eecChhhCC---CHHHHHHHHHHCCCEEEE
Confidence            45678888888888855  568998775544322221      13332 454   467899999999999999

All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes

>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37

Probab=87.43  E-value=1.9  Score=34.38  Aligned_cols=61  Identities=18%  Similarity=0.186  Sum_probs=39.7

Q ss_pred             HHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+++.+.++.+++.||  ++|+|-+=+.... +..+..   +..| .+|-   +.++|++++|++|++|++
T Consensus        28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~-~~~~~~---f~~d~~~FP---dp~~mi~~L~~~g~k~~~   91 (317)
T cd06599          28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIE-GGKRYV---FNWNKDRFP---DPAAFVAKFHERGIRLAP   91 (317)
T ss_pred             HHHHHHHHHHHHHcCCCeeEEEEeccccccC-CCceee---eecCcccCC---CHHHHHHHHHHCCCEEEE
Confidence            4578888889999775  7888864322110 001111   2233 3454   577999999999999999

The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=87.40  E-value=2.3  Score=31.61  Aligned_cols=49  Identities=20%  Similarity=0.438  Sum_probs=41.3

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR  121 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n  121 (136)
                      ++.....+.++.+.+.|+++|.+.|....                       .+..++++|.+.||.|+.+|
T Consensus        39 ~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~-----------------------~~~~~l~~~~~~gIpvv~~d   87 (257)
T PF13407_consen   39 NDPEEQIEQIEQAISQGVDGIIVSPVDPD-----------------------SLAPFLEKAKAAGIPVVTVD   87 (257)
T ss_dssp             TTHHHHHHHHHHHHHTTESEEEEESSSTT-----------------------TTHHHHHHHHHTTSEEEEES
T ss_pred             CCHHHHHHHHHHHHHhcCCEEEecCCCHH-----------------------HHHHHHHHHhhcCceEEEEe
Confidence            56688888899999999999999997653                       26688899999999999943

...

>PRK15447 putative protease; Provisional

Probab=87.38  E-value=3.1  Score=33.01  Aligned_cols=56  Identities=13%  Similarity=0.143  Sum_probs=39.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      |++.++.   ..+++.|+++||+.--. .+..      .+|        +.+++++.++.+|++|.+|++ .|.+
T Consensus        15 ~~~~~~~---~~~~~~gaDaVY~g~~~-~~~R------~~f--------~~~~l~e~v~~~~~~gkkvyva~p~i   71 (301)
T PRK15447         15 ETVRDFY---QRAADSPVDIVYLGETV-CSKR------REL--------KVGDWLELAERLAAAGKEVVLSTLAL   71 (301)
T ss_pred             CCHHHHH---HHHHcCCCCEEEECCcc-CCCc------cCC--------CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            4444444   47899999999998311 1100      022        579999999999999999999 4443

>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A

Probab=87.33  E-value=3.7  Score=35.60  Aligned_cols=71  Identities=14%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCc----cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEec
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDV----SNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFR  121 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~----~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~n  121 (136)
                      +.....+.|+.|+...||.|.+=-.+-......+-..    ..+..+--|-=..+-+|++|++||+.||+.|..|
T Consensus       116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn  190 (559)
T PF13199_consen  116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYN  190 (559)
T ss_dssp             GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred             CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence            4567788899999999999998443322111111111    1122222232335789999999999999999933

>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]

Probab=87.06  E-value=1.5  Score=36.17  Aligned_cols=59  Identities=17%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC-CCCCCCC---HHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD-VDPLFGD---MHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~-vd~~~Gt---~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      .+.+.++++.|+++|-++=-         |....... .+|.+=.   ..-+.+.|+.|.+.||+|+++-|.
T Consensus        76 ~~~~~~ik~~G~n~VRiPi~---------~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~  138 (407)
T COG2730          76 EEDFDQIKSAGFNAVRIPIG---------YWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHG  138 (407)
T ss_pred             hhHHHHHHHcCCcEEEcccc---------hhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecc
Confidence            66688999999999998422         22211111 4565542   235778899999999999995444

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=87.00  E-value=2.2  Score=32.71  Aligned_cols=54  Identities=11%  Similarity=0.062  Sum_probs=38.5

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+.+.++.++++|++.|.+.+.....    .....++        +.++++++.+.+.++||+|..
T Consensus        17 ~~~e~~~~~~~~G~~~iEl~~~~~~~----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~   70 (284)
T PRK13210         17 SWEERLVFAKELGFDFVEMSVDESDE----RLARLDW--------SKEERLSLVKAIYETGVRIPS   70 (284)
T ss_pred             CHHHHHHHHHHcCCCeEEEecCCccc----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence            67788999999999999996421100    0011111        356899999999999999876

>PF13200 DUF4015: Putative glycosyl hydrolase domain

Probab=86.25  E-value=1.5  Score=35.27  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=40.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC-CCCCCC----CHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD-VDPLFG----DMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~-vd~~~G----t~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ++-..+.+.++.+++.|+|+|.+-=  +   .+.|.=..+-.. .-...|    ...++++|++.+|++||.+|.
T Consensus        10 ~~~~~~~~~~~~i~~t~lNavVIDv--K---dd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IA   79 (316)
T PF13200_consen   10 GSPERLDKLLDLIKRTELNAVVIDV--K---DDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIA   79 (316)
T ss_pred             CCHHHHHHHHHHHHhcCCceEEEEE--e---cCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEE
Confidence            4445677788999999999998831  1   122211111000 001111    136899999999999999988

>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride

Probab=86.12  E-value=3.6  Score=32.85  Aligned_cols=64  Identities=27%  Similarity=0.460  Sum_probs=42.2

Q ss_pred             CHHHHHHhHHHHHHcCC--cEEEEcCCccC-CCCCCCCCc-cCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGI--ESLWIQPFYPA-GGADLGYDV-SNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~-~~~~~gY~~-~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+++.+.++.+++.||  ++|||. .... .....|+.. .|| ..|+ +|-   +.++||+.+|++|++|++
T Consensus        21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f-~~d~~~FP---dp~~mi~~Lh~~G~~~~~   89 (317)
T cd06594          21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNW-EWDPERYP---GLDELIEELKARGIRVLT   89 (317)
T ss_pred             CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeeee-EEChhhCC---CHHHHHHHHHHCCCEEEE
Confidence            56788999999999765  778886 3311 111223321 122 3443 444   578999999999999999

Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=86.09  E-value=2.8  Score=32.35  Aligned_cols=55  Identities=11%  Similarity=-0.037  Sum_probs=39.7

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ..+.+.++.++++|++.|.|.+- ...   ..        +++.--+.++.+++.+.+.++||+|..
T Consensus        16 ~~~~e~l~~~~~~G~~~VEl~~~-~~~---~~--------~~~~~~~~~~~~~~~~~l~~~gl~i~~   70 (279)
T TIGR00542        16 ECWLERLQLAKTCGFDFVEMSVD-ETD---DR--------LSRLDWSREQRLALVNAIIETGVRIPS   70 (279)
T ss_pred             CCHHHHHHHHHHcCCCEEEEecC-Ccc---ch--------hhccCCCHHHHHHHHHHHHHcCCCcee
Confidence            36788899999999999999532 111   01        111112478899999999999999875

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>COG3589 Uncharacterized conserved protein [Function unknown]

Probab=85.86  E-value=1.4  Score=35.88  Aligned_cols=55  Identities=18%  Similarity=0.230  Sum_probs=40.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .....-++-|+...+.||+.|..+=....+.. .              +-.+-|++|+++|++.|++||+
T Consensus        13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~-~--------------~~~~~~~ell~~Anklg~~viv   67 (360)
T COG3589          13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDA-E--------------LYFHRFKELLKEANKLGLRVIV   67 (360)
T ss_pred             CcchhHHHHHHHHHHcCccceeeecccCCchH-H--------------HHHHHHHHHHHHHHhcCcEEEE
Confidence            44566777788999999999987544332211 0              1235699999999999999999

>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ

Probab=85.58  E-value=4.1  Score=32.90  Aligned_cols=66  Identities=18%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             CHHHHHHhHHHHHHcCC--cEEEEcCCccCCC----CCCCCC------ccCCCC--CC--CCCCCHHHHHHHHHHHHHCC
Q psy12953         51 DMRGITEKLDHFVDLGI--ESLWIQPFYPAGG----ADLGYD------VSNYVD--VD--PLFGDMHDFEILIEEAHSRG  114 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~----~~~gY~------~~d~~~--vd--~~~Gt~~~~~~lv~~ah~~G  114 (136)
                      +-+++.+.++.+++.||  ++|+|-+-.....    .+..|.      ...+..  .+  .+|-   +.++||+++|++|
T Consensus        22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G   98 (340)
T cd06597          22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG   98 (340)
T ss_pred             CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence            56788899999999886  7888874221100    011111      111111  11  2333   6899999999999


Q ss_pred             CcEEE
Q psy12953        115 KPKRT  119 (136)
Q Consensus       115 i~vil  119 (136)
                      ++|++
T Consensus        99 ~kv~l  103 (340)
T cd06597          99 VKVLL  103 (340)
T ss_pred             CEEEE
Confidence            99998

CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities

Probab=85.56  E-value=2.6  Score=33.84  Aligned_cols=58  Identities=29%  Similarity=0.385  Sum_probs=41.0

Q ss_pred             CHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+++.+.++.+++.||  +.|+|-.-+..     +|...   ..|+ +|-   +.++|++.+|++|+++++
T Consensus        22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-----~~~~f---~~d~~~fP---dp~~m~~~l~~~g~~~~~   82 (339)
T cd06604          22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-----GYRVF---TWDKERFP---DPKELIKELHEQGFKVVT   82 (339)
T ss_pred             CHHHHHHHHHHHHHhCCCcceEEECchhhC-----CCCce---eeccccCC---CHHHHHHHHHHCCCEEEE
Confidence            45678888899999775  78888754432     22222   2343 454   458999999999999998

Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.

>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane

Probab=85.45  E-value=2.7  Score=33.87  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=35.7

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      .+=+.+-||--...-..+..+...+-.....-++++|+||+|+|.+=-|-+..                      +-.+.
T Consensus        27 F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~----------------------nHd~C   84 (314)
T PF03198_consen   27 FFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSK----------------------NHDEC   84 (314)
T ss_dssp             --EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS------------------------HHH
T ss_pred             EEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCC----------------------CHHHH
Confidence            33355666654443222223344555666777999999999999986554332                      23456


Q ss_pred             HHHHHHCCCcEEE
Q psy12953        107 IEEAHSRGKPKRT  119 (136)
Q Consensus       107 v~~ah~~Gi~vil  119 (136)
                      .+++.+.||.|++
T Consensus        85 M~~~~~aGIYvi~   97 (314)
T PF03198_consen   85 MSAFADAGIYVIL   97 (314)
T ss_dssp             HHHHHHTT-EEEE
T ss_pred             HHHHHhCCCEEEE
Confidence            6667889999999

It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=84.96  E-value=3.5  Score=31.59  Aligned_cols=43  Identities=21%  Similarity=0.203  Sum_probs=31.7

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      |+.+.++.+++.|++.|.+....                       .+++.++++.++++|++.++
T Consensus        92 G~~~fi~~~~~aG~~giiipDl~-----------------------~ee~~~~~~~~~~~g~~~i~  134 (242)
T cd04724          92 GLERFLRDAKEAGVDGLIIPDLP-----------------------PEEAEEFREAAKEYGLDLIF  134 (242)
T ss_pred             CHHHHHHHHHHCCCcEEEECCCC-----------------------HHHHHHHHHHHHHcCCcEEE
Confidence            45566667777777776664221                       25899999999999999887

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II)

Probab=84.94  E-value=0.96  Score=22.78  Aligned_cols=19  Identities=26%  Similarity=0.763  Sum_probs=14.8

Q ss_pred             ChhHHHHHHHHHHHhhhcc
Q psy12953          1 MLSRIFLAFLGFLSLVSCQ   19 (136)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~   19 (136)
                      |++++++.+++++++++|.
T Consensus         6 mmKkil~~l~a~~~LagCs   24 (25)
T PF08139_consen    6 MMKKILFPLLALFMLAGCS   24 (25)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            5788888888888887773

The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].

>cd05014 SIS_Kpsf KpsF-like protein

Probab=84.79  E-value=4.4  Score=27.16  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=38.1

Q ss_pred             HHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         60 DHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        60 ~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ..+..+|...+.+.+..............|.--+=..=|...+..+.++.||++|++|+.
T Consensus        20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~   79 (128)
T cd05014          20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA   79 (128)
T ss_pred             HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence            456778999988866422111101112223222334447788999999999999999999

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>PRK12928 lipoyl synthase; Provisional

Probab=84.75  E-value=6.3  Score=31.23  Aligned_cols=62  Identities=18%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+..++.+.++.|+++|++.|.+.+.......  .       -.=.+|=++++|+++-+.|.+.|.+-+.
T Consensus       215 GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~--~-------~~v~~~~~~~~f~~~~~~~~~~g~~~~~  276 (290)
T PRK12928        215 GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLA--H-------LPVQRYWTPEEFEALGQIARELGFSHVR  276 (290)
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCcc--C-------CceeeccCHHHHHHHHHHHHHcCCceeE
Confidence            367889999999999999999999886543211  1       1124566899999999999999998777

>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.64  E-value=0.57  Score=35.06  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=35.7

Q ss_pred             CCCCCCCCccCCCCCCCCC------CCHHHHHHHHHHHHHCCCcEEE
Q psy12953         79 GGADLGYDVSNYVDVDPLF------GDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        79 ~~~~~gY~~~d~~~vd~~~------Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +..+.||........+|.+      |+.+-++.=++++|++|+++.+
T Consensus       138 pa~dGGy~llgLrr~~pe~fe~ipwg~~~v~~lTl~~lrqng~~~~l  184 (211)
T COG3222         138 PAFDGGYYLLGLRRFAPELFEAIPWGTPDVLELTLKALRQNGIDVYL  184 (211)
T ss_pred             ccccCcEEEEEeeccCHHHHhcCCCCCchHHHHHHHHHHHcCCcccc
Confidence            4457899998888888764      9999999999999999999998

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=83.42  E-value=10  Score=29.59  Aligned_cols=58  Identities=10%  Similarity=0.053  Sum_probs=40.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH-HHHHHHHHHHC-CCcEEEeccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD-FEILIEEAHSR-GKPKRTFREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~-~~~lv~~ah~~-Gi~vil~nh~~~  125 (136)
                      .+.++..+...+.+++|+++|.+.|++-...                  +.++ ++.+-+-|.+- ++.|+++|-.+.
T Consensus        80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~------------------~~~~i~~~~~~v~~a~~~lpi~iYn~P~~  139 (288)
T cd00954          80 LNLKESQELAKHAEELGYDAISAITPFYYKF------------------SFEEIKDYYREIIAAAASLPMIIYHIPAL  139 (288)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC------------------CHHHHHHHHHHHHHhcCCCCEEEEeCccc
Confidence            5678899999999999999999988652211                  1233 33344445566 899999765543

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PLN02591 tryptophan synthase

Probab=83.40  E-value=5  Score=31.21  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      |+.+.+..+++.|++.|.+..+-                       .+|..+++++|+++||..+.
T Consensus        94 G~~~F~~~~~~aGv~GviipDLP-----------------------~ee~~~~~~~~~~~gl~~I~  136 (250)
T PLN02591         94 GIDKFMATIKEAGVHGLVVPDLP-----------------------LEETEALRAEAAKNGIELVL  136 (250)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCC-----------------------HHHHHHHHHHHHHcCCeEEE
Confidence            77777888899999998887421                       37899999999999999998

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=83.16  E-value=6  Score=29.82  Aligned_cols=59  Identities=20%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN  129 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~  129 (136)
                      ..++.+.+-+..++++|++.+.+..+.+...            +     +.+-.++|+++|+  |+.+.+  |.+++...
T Consensus        69 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~------------i-----D~~~~~~Li~~a~--~~~~tF--HRAfD~~~  127 (201)
T PF03932_consen   69 EEIEIMKEDIRMLRELGADGFVFGALTEDGE------------I-----DEEALEELIEAAG--GMPVTF--HRAFDEVP  127 (201)
T ss_dssp             HHHHHHHHHHHHHHHTT-SEEEE--BETTSS------------B------HHHHHHHHHHHT--TSEEEE---GGGGGSS
T ss_pred             HHHHHHHHHHHHHHHcCCCeeEEEeECCCCC------------c-----CHHHHHHHHHhcC--CCeEEE--eCcHHHhC
Confidence            3467777888999999999999998876543            1     2467899999886  999999  88776654

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=82.72  E-value=6.4  Score=32.09  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      |++..+.    ..-+.|+++|++.-- ...  ..+.+ .+|        +.+++++.|+.||++|.++++ .|-.
T Consensus        14 g~l~~l~----~ai~~GADaVY~G~~-~~~--~R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~N~~   72 (347)
T COG0826          14 GNLEDLK----AAIAAGADAVYIGEK-EFG--LRRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAVNTL   72 (347)
T ss_pred             CCHHHHH----HHHHcCCCEEEeCCc-ccc--ccccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            4554444    445678999999754 221  12223 344        367899999999999999998 4443

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea

Probab=82.35  E-value=12  Score=29.16  Aligned_cols=58  Identities=14%  Similarity=0.016  Sum_probs=40.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~  125 (136)
                      .+.++..+...+.+++|+++|.+.|++-...                 -+.+++.+..++..+ ++.|+++|....
T Consensus        75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~-----------------~~~~~i~~yf~~v~~-~lpv~iYn~P~~  132 (279)
T cd00953          75 LNLEESIELARAAKSFGIYAIASLPPYYFPG-----------------IPEEWLIKYFTDISS-PYPTFIYNYPKA  132 (279)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCC-----------------CCHHHHHHHHHHHHh-cCCEEEEeCccc
Confidence            4578999999999999999999988662210                 023556555555555 899999775443

This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=82.10  E-value=5.4  Score=31.10  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=33.0

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      |+.+.++.+++.|++.+.+..+                       ..++.++++++|.++||..+.
T Consensus       105 G~e~f~~~~~~aGvdGviipDL-----------------------p~ee~~~~~~~~~~~gl~~I~  147 (258)
T PRK13111        105 GVERFAADAAEAGVDGLIIPDL-----------------------PPEEAEELRAAAKKHGLDLIF  147 (258)
T ss_pred             CHHHHHHHHHHcCCcEEEECCC-----------------------CHHHHHHHHHHHHHcCCcEEE
Confidence            5666677778888888777411                       147899999999999999988

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=82.02  E-value=5.4  Score=30.48  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=37.3

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+.+.++.++++|++.|.+.+-..          ..|   .+.+ +.++.+++.+++.++||+|..
T Consensus        14 ~l~~~l~~~~~~G~~~vEl~~~~~----------~~~---~~~~-~~~~~~~l~~~~~~~gl~v~s   65 (275)
T PRK09856         14 PIEHAFRDASELGYDGIEIWGGRP----------HAF---APDL-KAGGIKQIKALAQTYQMPIIG   65 (275)
T ss_pred             CHHHHHHHHHHcCCCEEEEccCCc----------ccc---cccc-CchHHHHHHHHHHHcCCeEEE
Confidence            578889999999999999943110          011   1111 235789999999999999977

>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional

Probab=81.78  E-value=5  Score=34.05  Aligned_cols=69  Identities=10%  Similarity=0.119  Sum_probs=46.5

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~  125 (136)
                      ..+....+-++-+++||+++.-++=-+..-... |..    .  .+.-...+-.++++++++++||+.|+ .+|-..
T Consensus        68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~-g~~----~--~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~  137 (474)
T PRK09852         68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQ-GDE----L--TPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDV  137 (474)
T ss_pred             chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeC-CCC----C--CCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence            457788889999999999999886543321110 100    0  01222346689999999999999999 667543

>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase

Probab=80.97  E-value=6.4  Score=31.74  Aligned_cols=60  Identities=17%  Similarity=0.420  Sum_probs=38.2

Q ss_pred             CHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+++.+.++.+++.|  ++.|+|-.-+...     |.  +| ..|+ +|-++. -++||+.+|++|++|++
T Consensus        22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-----~~--~f-~~d~~~FPdp~-~~~mi~~L~~~G~k~~~   84 (339)
T cd06602          22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-----RR--DF-TLDPVRFPGLK-MPEFVDELHANGQHYVP   84 (339)
T ss_pred             CHHHHHHHHHHHHHhCCCcceEEECcccccC-----cc--ce-ecccccCCCcc-HHHHHHHHHHCCCEEEE
Confidence            3467888888888866  4778875433221     11  11 2222 333221 18999999999999999

MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of

>TIGR00510 lipA lipoate synthase

Probab=80.50  E-value=12  Score=29.83  Aligned_cols=62  Identities=13%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+..++.+.++.|+++|++.+-+.+.+.....  .+.+       .+|=++++|+.+-+.|-+.|.+-+.
T Consensus       218 GETeee~~etl~~Lrelg~d~v~igqYl~p~~~--~~~v-------~~~~~p~~f~~~~~~a~~~gf~~v~  279 (302)
T TIGR00510       218 GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRR--HLPV-------KRYVSPEEFDYYRSVALEMGFLHAA  279 (302)
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCC--CCcc-------ccCCCHHHHHHHHHHHHHcCChheE
Confidence            477889999999999999999999887754321  2222       3556789999999999999998776

The family shows strong sequence conservation.

>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e

Probab=80.49  E-value=6.6  Score=29.85  Aligned_cols=45  Identities=11%  Similarity=0.190  Sum_probs=28.5

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPK  117 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~v  117 (136)
                      .+...+..+++||.+.|=+.|+--.                   -..+||+.+.++|-++|+.+
T Consensus       136 ~vetAiaml~dmG~~SiKffPm~Gl-------------------~~leE~~avAkA~a~~g~~l  180 (218)
T PF07071_consen  136 PVETAIAMLKDMGGSSIKFFPMGGL-------------------KHLEELKAVAKACARNGFTL  180 (218)
T ss_dssp             EHHHHHHHHHHTT--EEEE---TTT-------------------TTHHHHHHHHHHHHHCT-EE
T ss_pred             cHHHHHHHHHHcCCCeeeEeecCCc-------------------ccHHHHHHHHHHHHHcCcee
Confidence            4566788999999999999997422                   12577777777777777765

g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.

>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3

Probab=80.48  E-value=5.5  Score=33.02  Aligned_cols=66  Identities=23%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.++.++++|++.+.|--=+.....+.--...|. .+| .+|-  +.++.|++.+|++||+.=+
T Consensus        56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~Gl  122 (394)
T PF02065_consen   56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGL  122 (394)
T ss_dssp             -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEE
T ss_pred             CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEE
Confidence            3467788888999999999988543322111110012233 344 3553  4699999999999999988

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=80.33  E-value=13  Score=29.13  Aligned_cols=65  Identities=9%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+..++.+.+..+++.|++.|=+.--....   .   ..+  ......=+.++|++++++||++|+.|.+  |..
T Consensus       117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~---~---~~~--~~~~~~~~~e~l~~~~~~A~~~g~~v~~--H~~  181 (342)
T cd01299         117 DGVEEVRAAVREQLRRGADQIKIMATGGVL---S---PGD--PPPDTQFSEEELRAIVDEAHKAGLYVAA--HAY  181 (342)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEeccCCcC---C---CCC--CCcccCcCHHHHHHHHHHHHHcCCEEEE--EeC
Confidence            446777888888899999998654311000   0   000  0111122578999999999999999999  654

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=80.13  E-value=7.5  Score=30.15  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHCCCcEEE
Q psy12953        100 MHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus       100 ~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .++..++++.++++|++.++
T Consensus       126 ~ee~~~~~~~~~~~gl~~i~  145 (256)
T TIGR00262       126 LEESGDLVEAAKKHGVKPIF  145 (256)
T ss_pred             hHHHHHHHHHHHHCCCcEEE
Confidence            36889999999999999776

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PLN02814 beta-glucosidase

Probab=80.08  E-value=5.9  Score=33.88  Aligned_cols=68  Identities=15%  Similarity=0.106  Sum_probs=46.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~~  125 (136)
                      .-+....+-++-+|+||+++--++=-+..-.. .|-.       .+.-...+=.++||+++.++||+.++ ..|-..
T Consensus        74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P-~G~g-------~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl  142 (504)
T PLN02814         74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIP-NGRG-------LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL  142 (504)
T ss_pred             cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCc-CCCC-------CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence            45777888899999999999887543322110 0100       12223345689999999999999999 777543

>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II

Probab=80.04  E-value=6.6  Score=31.29  Aligned_cols=59  Identities=24%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             CCHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-+++.+.++.+++.||  +.|+|-.=+-.     +|...   ..|+ +|-   +.++|++.+|++|++|++
T Consensus        21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-----~~~~f---~~d~~~FP---dp~~~i~~l~~~g~k~~~   82 (317)
T cd06600          21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-----SYRLF---TWDPYRFP---EPKKLIDELHKRNVKLVT   82 (317)
T ss_pred             CCHHHHHHHHHHHHHcCCCcceEEEChhhhC-----CCCce---eechhcCC---CHHHHHHHHHHCCCEEEE
Confidence            356788888888888664  77888642211     22222   2233 344   567999999999999999

MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
4gin_A	584	Crystal Structure Of The Mutb R284c Mutant From Cry		1e-26
2ze0_A	555	Alpha-glucosidase Gsj Length = 555		3e-25
1zja_A	557	Crystal Structure Of The Trehalulose Synthase Mutb		1e-24
4h2c_A	557	Trehalulose Synthase Mutb R284c Mutant Length = 557		1e-24
4gi6_A	557	Crystal Structure Of The Mutb F164l Mutant In Compl		1e-24
2pwe_A	556	Crystal Structure Of The Mutb E254q Mutant In Compl		1e-24
2pwg_A	556	Crystal Structure Of The Trehalulose Synthase Mutb		1e-24
2pwf_A	556	Crystal Structure Of The Mutb D200a Mutant In Compl		1e-24
1m53_A	570	Crystal Structure Of Isomaltulose Synthase (Pali) F		3e-24
1uok_A	558	Crystal Structure Of B. Cereus Oligo-1,6-Glucosidas		1e-23
2zic_A	543	Crystal Structure Of Streptococcus Mutans Dextran G		3e-23
2zid_A	543	Crystal Structure Of Dextran Glucosidase E236q Comp		3e-23
4aie_A	549	Structure Of Glucan-1,6-Alpha-Glucosidase From Lact		7e-23
3gbd_A	558	Crystal Structure Of The Isomaltulose Synthase Smua		1e-22
3a47_A	589	Crystal Structure Of Isomaltase From Saccharomyces		5e-22
3axh_A	589	Crystal Structure Of Isomaltase In Complex With Iso		5e-22
3k8k_A	669	Crystal Structure Of Susg Length = 669		2e-17
3k8l_A	669	Crystal Structure Of Susg-D498n Mutant With Maltohe		3e-17
1wza_A	488	Crystal Structure Of Alpha-Amylase From H.Orenii Le		5e-15
1vfm_A	585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		4e-12
1wzk_A	585	Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T		5e-12
1jl8_A	585	Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoact		5e-12
1jf5_A	585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		5e-12
1bvz_A	585	Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vul		5e-12
1wzm_A	585	Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (t		5e-12
1g1y_A	585	Crystal Structure Of Alpha-Amylase Ii (Tvaii) From		5e-12
1wzl_A	585	Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (T		5e-12
1jf6_A	585	Crystal Structure Of Thermoactinomyces Vulgaris R-4		5e-12
1lwh_A	441	Crystal Structure Of T. Maritima 4-Alpha-Glucanotra		1e-10
1j0j_A	588	Crystal Structure Of Neopullulanase E357q Complex W		3e-10
1j0h_A	588	Crystal Structure Of Bacillus Stearothermophilus Ne		3e-10
1ea9_C	583	Cyclomaltodextrinase Length = 583		4e-10
1gvi_A	588	Thermus Maltogenic Amylase In Complex With Beta-Cd		9e-10
1sma_A	588	Crystal Structure Of A Maltogenic Amylase Length =		1e-09
4aee_A	696	Crystal Structure Of Maltogenic Amylase From S.Mari		6e-09
2dh3_A	424	Crystal Structure Of Human Ed-4f2hc Length = 424		2e-08
2dh2_A	424	Crystal Structure Of Human Ed-4f2hc Length = 424		2e-08
1mvy_A	628	Amylosucrase Mutant E328q Co-Crystallized With Malt		3e-08
1jgi_A	628	Crystal Structure Of The Active Site Mutant Glu328g		3e-08
2z1k_A	475	Crystal Structure Of Ttha1563 From Thermus Thermoph		6e-08
4fls_A	628	Crystal Structure Of Amylosucrase Inactive Double M		1e-07
4flo_A	628	Crystal Structure Of Amylosucrase Double Mutant A28		1e-07
4flr_A	628	Crystal Structure Of Amylosucrase Double Mutant A28		1e-07
1g5a_A	628	Amylosucrase From Neisseria Polysaccharea Length =		1e-07
3ueq_A	632	Crystal Structure Of Amylosucrase From Neisseria Po		1e-07
4flq_A	628	Crystal Structure Of Amylosucrase Double Mutant A28		1e-07
2wc7_A	488	Crystal Structure Of Nostoc Punctiforme Debranching		4e-07
3dhu_A	449	Crystal Structure Of An Alpha-Amylase From Lactobac		9e-07
1cgu_A	684	Catalytic Center Of Cyclodextrin Glycosyltransferas		2e-06
8cgt_A	684	Structure Of Cyclodextrin Glycosyltransferase Compl		2e-06
6cgt_A	684	Hoxa Complex Of Cyclodextrin Glycosyltransferase Mu		2e-06
1cgt_A	684	Structure Of Cyclodextrin Glycosyltransferase Refin		2e-06
4cgt_A	678	Deletion Mutant Delta(145-150), F151d Of Cyclodextr		3e-06
4aef_A	645	The Crystal Structure Of Thermostable Amylase From		6e-06
1izk_A	637	Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mut		8e-06
1izj_A	637	Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mut		9e-06
2d0f_A	637	Crystal Structure Of Thermoactinomyces Vulgaris R-4		9e-06
1uh2_A	637	Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-		9e-06
1ji1_A	637	Crystal Structure Analysis Of Thermoactinomyces Vul		9e-06
3hje_A	704	Crystal Structure Of Sulfolobus Tokodaii Hypothetic		3e-05
3vge_A	558	Crystal Structure Of Glycosyltrehalose Trehalohydro		1e-04
3vgg_A	558	Crystal Structure Of Glycosyltrehalose Trehalohydro		1e-04
3vgd_A	558	Ctystal Structure Of Glycosyltrehalose Trehalohydro		1e-04
1eh9_A	558	Crystal Structure Of Sulfolobus Solfataricus Glycos		1e-04
1eha_A	558	Crystal Structure Of Glycosyltrehalose Trehalohydro		1e-04
1qho_A	686	Five-Domain Alpha-Amylase From Bacillus Stearotherm		2e-04
1uks_A	686	Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN		3e-04
1cyg_A	680	Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgt		3e-04
1v3j_A	686	Crystal Structure Of F283l Mutant Cyclodextrin Glyc		3e-04
1v3k_A	686	Crystal Structure Of F283y Mutant Cyclodextrin Glyc		3e-04
1d7f_A	686	Crystal Structure Of Asparagine 233-Replaced Cyclod		3e-04
1pam_A	686	Cyclodextrin Glucanotransferase Length = 686		3e-04
3ucq_A	655	Crystal Structure Of Amylosucrase From Deinococcus		3e-04
4gkl_A	422	Crystal Structure Of A Noncanonic Maltogenic Alpha-		4e-04
1tcm_A	686	Cyclodextrin Glycosyltransferase W616a Mutant From		6e-04
1ot2_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		6e-04
1ot1_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		6e-04
1cxk_A	686	Complex Between A Maltononaose Substrate And Bacill		6e-04
1cdg_A	686	Nucleotide Sequence And X-Ray Structure Of Cyclodex		6e-04
1cgx_A	686	Site Directed Mutations Of The Active Site Residue		6e-04
1cgv_A	686	Site Directed Mutations Of The Active Site Residue		6e-04
1kcl_A	686	Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl		6e-04
1eo5_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		6e-04
1cgw_A	686	Site Directed Mutations Of The Active Site Residue		6e-04
1cgy_A	686	Site Directed Mutations Of The Active Site Residue		6e-04
1kck_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		6e-04
1cxl_A	686	Complex Between A Covalent Intermediate And Bacillu		7e-04
2wpg_A	637	Sucrose Hydrolase Length = 637		7e-04
1pez_A	686	Bacillus Circulans Strain 251 Mutant A230v Length =		7e-04
1dtu_A	686	Bacillus Circulans Strain 251 Cyclodextrin Glycosyl		8e-04

>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals Soaked With The Inhibitor Deoxynojirimycin Length = 584

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 1   MLSRIFLA--FLGFLSLVSCQVE---LPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGI 55
           ++ R+F A   L F S+ S + E    P   WW++A+ YQ+YPRSF+D NGDG GD +G+
Sbjct: 2   LMKRLFAASLMLAFSSVSSVRAEEAVKPGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGL 61
Query: 56  TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           TEKLD+   LGI+++WI P Y +   D GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 62  TEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRG 120

>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj Length = 555

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 65/91 (71%)
Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           +K WW+  + YQIYPRSF D NGDG GD+RGI EKLD+ V+LG++ +WI P Y +  AD 
Sbjct: 2   KKTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADN 61
Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD+S+Y  +   FG M DF+ L+ +AH RG
Sbjct: 62  GYDISDYYAIMDEFGTMDDFDELLAQAHRRG 92

>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 (Triclinic Form) Length = 557

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P   WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+   LGI+++WI P Y +   D
Sbjct: 2   PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61
Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 62  NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93

>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant Length = 557

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P   WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+   LGI+++WI P Y +   D
Sbjct: 2   PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61
Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 62  NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93

>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With Glucose Length = 557

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P   WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+   LGI+++WI P Y +   D
Sbjct: 2   PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61
Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 62  NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93

>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With The Substrate Sucrose Length = 556

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P   WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+   LGI+++WI P Y +   D
Sbjct: 1   PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 60
Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 61  NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92

>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From Pseudomonas Mesoacidophila Mx-45 Complexed To The Inhibitor Castanospermine Length = 556

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P   WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+   LGI+++WI P Y +   D
Sbjct: 1   PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 60
Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 61  NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92

>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With Glucose Length = 556

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P   WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+   LGI+++WI P Y +   D
Sbjct: 1   PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 60
Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 61  NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 92

>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From Klebsiella Sp. Lx3 Length = 570

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 62/99 (62%)
Query: 16  VSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF 75
           +  Q E     WW+ A+ YQIYPRSF+D N DG GD+RGI EKLD+   LGI+++WI P 
Sbjct: 8   IHVQKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPH 67
Query: 76  YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           Y +   D GYD+SNY  +   +G M DF+ L+ E   R 
Sbjct: 68  YDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 106

>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase Length = 558

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 63/91 (69%)
Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           +K+WW+ +++YQIYPRSF D NGDG GD+RGI  KLD+  +LGI+ +W+ P Y +   D 
Sbjct: 2   EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDN 61
Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD+S+Y  +   FG M D++ L+ E H R 
Sbjct: 62  GYDISDYCKIMNEFGTMEDWDELLHEMHERN 92

>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran Glucosidase Length = 543

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           QK WW  A +YQIYP+SF D NGDG GD++GIT KLD+   LG+ ++W+ P Y +   D 
Sbjct: 2   QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDN 61
Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD++NY  +  +FG+M D + L+ +A  RG
Sbjct: 62  GYDIANYEAIADIFGNMADMDNLLTQAKMRG 92

>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex With Isomaltotriose Length = 543

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           QK WW  A +YQIYP+SF D NGDG GD++GIT KLD+   LG+ ++W+ P Y +   D 
Sbjct: 2   QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDN 61
Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD++NY  +  +FG+M D + L+ +A  RG
Sbjct: 62  GYDIANYEAIADIFGNMADMDNLLTQAKMRG 92

>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From Lactobacillus Acidophilus Ncfm Length = 549

Iteration: 1
 Score =  102 bits (254), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 62/84 (73%)
Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYD 86
           WW+ A++YQ+YP+SF+D NGDG GD++GI  +LD+   LGI+++W+ P Y + G D GYD
Sbjct: 6   WWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDNGYD 65
Query: 87  VSNYVDVDPLFGDMHDFEILIEEA 110
           +S+Y  +DP +G M D + LI +A
Sbjct: 66  ISDYEAIDPQYGTMADMDELISKA 89

>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From Protaminobacter Rubrum Length = 558

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGY 85
           +WW+ A+ YQ+YPRSF+D NGDG GD+ GI EKLD+   LGI+++WI P Y +   D GY
Sbjct: 4   KWWKEAVFYQVYPRSFKDTNGDGIGDINGIIEKLDYLKALGIDAIWINPHYDSPNTDNGY 63
Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           D+ +Y  +   +G M DF+ LI E   R 
Sbjct: 64  DIRDYRKIMKEYGTMEDFDRLISEMKKRN 92

>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces Cerevisiae Length = 589

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           +++ S   E   K WW+ A  YQIYP SF+D N DG GDM+GI  KL++  +LG +++WI
Sbjct: 1   MTISSAHPETEPK-WWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWI 59
Query: 73  QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            PFY +   D+GYD++NY  V P +G   D   LIE+ H  G
Sbjct: 60  SPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101

>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose Length = 589

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           +++ S   E   K WW+ A  YQIYP SF+D N DG GDM+GI  KL++  +LG +++WI
Sbjct: 1   MTISSAHPETEPK-WWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWI 59
Query: 73  QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            PFY +   D+GYD++NY  V P +G   D   LIE+ H  G
Sbjct: 60  SPFYDSPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101

>pdb|3K8K|A Chain A, Crystal Structure Of Susg Length = 669

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
           I YQ+   SF D +GDG GD+ G+T+KLD+   LG+++LW+ P +P      GYDV++Y 
Sbjct: 39  ISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCXSYH-GYDVTDYT 97
Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
            V+P  G   DF+ L+ EAH+RG
Sbjct: 98  KVNPQLGTESDFDRLVTEAHNRG 120

>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose Length = 669

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
           I YQ+   SF D +GDG GD+ G+T+KLD+   LG+++LW+ P +P      GYDV++Y 
Sbjct: 39  ISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCMSYH-GYDVTDYT 97
Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
            V+P  G   DF+ L+ EAH+RG
Sbjct: 98  KVNPQLGTESDFDRLVTEAHNRG 120

>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii Length = 488

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 29  QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPAGG 80
           +    Y+I+ RSF D +GDG GD++GI EKLD+          DLG+  +W+ P + +  
Sbjct: 3   KHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPS 62
Query: 81  ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
              GYDV++Y  ++P +G + DF  L+E AH RG
Sbjct: 63  YH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95

>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2ALPHA-Cyclodextrin Complex Length = 585

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt D465n Length = 585

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin Based On A Co- Crystallization With Methyl Beta-Cyclodextrin Length = 585

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 2 Mutant F286a Length = 585

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R- 47 Length = 585

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii) Mutatnt R469k Length = 585

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin Complex Length = 585

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii) Mutatnt R469l Length = 585

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase Mutant F286y Length = 585

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 25/111 (22%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGD------GT----------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD      GT                GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERF--ANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183
Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + A  +   YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIF-ASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-Glucanotransferase Length = 441

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
           I YQIY RSFRD N DG GD RG+   + +  +LGI+ +W+ P + +     GYDV ++ 
Sbjct: 2   IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFH-GYDVVDFY 60
Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
                +G   +F+ +IE  H  G
Sbjct: 61  SFKAEYGSEREFKEMIEAFHDSG 83

>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With Maltotetraose Length = 588

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 20/108 (18%)
Query: 26  EWWQTAIMYQIYPRSFRD----VNGDGT---------------GDMRGITEKLDHFVDLG 66
           +W +  + YQI+P  F +    ++ +G+               GD++GI + LD+ VDLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 189
Query: 67  IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           I  +++ P +    ++  YD ++Y +VDP FGD    + LI+  H +G
Sbjct: 190 ITGIYLTPIF-RSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236

>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Neopullulanase Length = 588

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 20/108 (18%)
Query: 26  EWWQTAIMYQIYPRSFRD----VNGDGT---------------GDMRGITEKLDHFVDLG 66
           +W +  + YQI+P  F +    ++ +G+               GD++GI + LD+ VDLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 189
Query: 67  IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           I  +++ P +    ++  YD ++Y +VDP FGD    + LI+  H +G
Sbjct: 190 ITGIYLTPIF-RSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236

>pdb|1EA9|C Chain C, Cyclomaltodextrinase Length = 583

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 29/128 (22%)
Query: 27  WWQTAIMYQIYPRSFRDVNGD------GT---------------GDMRGITEKLDHFVDL 65
           W + AI YQI+P  F   NGD      GT               GD++G+ + LDH   L
Sbjct: 127 WVKDAIFYQIFPERF--ANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKL 184
Query: 66  GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125
           G+ +++  P + A   +  YD  +Y  +DP FGD    + L++  H RG      R +  
Sbjct: 185 GVNAVYFTPLFKAT-TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERG-----IRVLLD 238
Query: 126 SFANNQGR 133
           +  N+ GR
Sbjct: 239 AVFNHSGR 246

>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd Length = 588

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 20/108 (18%)
Query: 26  EWWQTAIMYQIYPRSFRDVNG-------------DGT------GDMRGITEKLDHFVDLG 66
           +W +  + YQI+P  F + N              D T      GD++GI + LD+  DLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHLDYLADLG 189
Query: 67  IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           I  +++ P + A  ++  YD ++Y ++DP FGD    + L++  H +G
Sbjct: 190 ITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKG 236

>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase Length = 588

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 20/108 (18%)
Query: 26  EWWQTAIMYQIYPRSFRDVNG-------------DGT------GDMRGITEKLDHFVDLG 66
           +W +  + YQI+P  F + N              D T      GD++GI + LD+  DLG
Sbjct: 130 DWVKDTVWYQIFPERFANGNPAISPKGARPWGSEDPTPTSFFGGDLQGIIDHLDYLADLG 189
Query: 67  IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           I  +++ P + A  ++  YD ++Y ++DP FGD    + L++  H +G
Sbjct: 190 ITGIYLTPIFRAP-SNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKG 236

>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus Length = 696

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 24  QKEWWQTAIMYQIYPRSFR--DVNGDGT---------------GDMRGITEKLDHFVDLG 66
           +  W+   + YQI+  SF   D N D                 GD+ GI + +DH  DLG
Sbjct: 219 KPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLG 278
Query: 67  IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +E++++ P + +      YD  +Y  +D   G M DFE L++  HSR
Sbjct: 279 VETIYLTPIFSSTSYH-RYDTIDYKSIDKYLGTMEDFEKLVQVLHSR 324

>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc Length = 424

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 21  ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
           ELP ++WW T  +Y+I     +   G G G++ G+  +LD+   L ++ L + P +    
Sbjct: 6   ELPAQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK 63
Query: 81  ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSF 127
            D+    ++ + +DP FG   DF+ L++ A  + K  R   ++T ++
Sbjct: 64  DDVAQ--TDLLQIDPNFGSKEDFDSLLQSA--KKKSIRVILDLTPNY 106

>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc Length = 424

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 21  ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
           ELP ++WW T  +Y+I     +   G G G++ G+  +LD+   L ++ L + P +    
Sbjct: 6   ELPAQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK 63
Query: 81  ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSF 127
            D+    ++ + +DP FG   DF+ L++ A  + K  R   ++T ++
Sbjct: 64  DDVAQ--TDLLQIDPNFGSKEDFDSLLQSA--KKKSIRVILDLTPNY 106

>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With Maltoheptaose. Length = 628

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L++ P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 169 IAALHEAG 176

>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of Amylosucrase From Neisseria Polysaccharea In Complex With The Natural Substrate Sucrose Length = 628

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L++ P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 169 IAALHEAG 176

>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus Hb8 Length = 475

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 27/128 (21%)
Query: 27  WWQTAIMYQIYPRSF---------------------RDVNGDGTGDMRGITEKLDHFVDL 65
           W++ A  YQI+P  F                       + G   G + G+ EKL + +DL
Sbjct: 3   WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDL 62
Query: 66  GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK 125
           G+E++++ P + A  A+  Y   +Y  VDP+ G       L+E AH+ G      R +  
Sbjct: 63  GVEAIYLNPVF-ASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHG-----VRVILD 116
Query: 126 SFANNQGR 133
              N+ GR
Sbjct: 117 GVFNHTGR 124

>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant F290k-E328q From Neisseria Polysaccharea In Complex With Sucrose Length = 628

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L + P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 169 IAALHEAG 176

>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290c From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L + P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 169 IAALHEAG 176

>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290l From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L + P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 169 IAALHEAG 176

>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L + P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 169 IAALHEAG 176

>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria Polysaccharea In Complex With Turanose Length = 632

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L + P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 113 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 172
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 173 IAALHEAG 180

>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant A289p-F290i From Neisseria Polysaccharea Length = 628

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            GD++G+ +K+ +F +LG+  L + P +  P G +D GY VS+Y DV+P  G + D   +
Sbjct: 109 AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREV 168
Query: 107 IEEAHSRG 114
           I   H  G
Sbjct: 169 IAALHEAG 176

>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching Enzyme( Npde)(Acarbose Soaked) Length = 488

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 25/118 (21%)
Query: 18  CQVELPQKEWWQTAIMYQIYPRSFR----------------------DVNGDGTGDMRGI 55
            Q++ P  +W + A+ YQI+P  F                        + G   GD+ GI
Sbjct: 1   MQIQTP--DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGI 58
Query: 56  TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
            E LD+  +LGI +++  P + +  ++  Y   +Y  VDP+ G    F+ L++ AH R
Sbjct: 59  MEDLDYIQNLGINAIYFTPIFQS-ASNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQR 115

>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus Plantarum Length = 449

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 13  LSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWI 72
           +SL   Q +L      +  ++Y ++ R++ +      G+  G+T  L    DLG + LW+
Sbjct: 1   MSLRDTQTQL------RNEMIYSVFVRNYSEA-----GNFAGVTADLQRIKDLGTDILWL 49
Query: 73  QPFYPAGGAD----LG--YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            P  P G  +    LG  Y + +Y  ++P +G + DF+ L + AH  G
Sbjct: 50  LPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELG 97

>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase Derived From X-Ray Structure Analysis Combined With Site- Directed Mutagenesis Length = 684

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQ++   F D N          D T         GD +G+  K++  +F D
Sbjct: 9   KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65  LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           LG+ +LWI QP                A  GY   ++   +P FG M DF+ LI  AH++
Sbjct: 69  LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
           G        P  T    E   SFA N   Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158

>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed With A Thio-Maltohexaose Length = 684

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQ++   F D N          D T         GD +G+  K++  +F D
Sbjct: 9   KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65  LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           LG+ +LWI QP                A  GY   ++   +P FG M DF+ LI  AH++
Sbjct: 69  LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
           G        P  T    E   SFA N   Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158

>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant Length = 684

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQ++   F D N          D T         GD +G+  K++  +F D
Sbjct: 9   KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65  LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           LG+ +LWI QP                A  GY   ++   +P FG M DF+ LI  AH++
Sbjct: 69  LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
           G        P  T    E   SFA N   Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158

>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At 2.0 Angstroms Resolution Length = 684

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 40/150 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQ++   F D N          D T         GD +G+  K++  +F D
Sbjct: 9   KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65  LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           LG+ +LWI QP                A  GY   ++   +P FG M DF+ LI  AH++
Sbjct: 69  LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G-------KPKRT--FREVTKSFANNQGRY 134
           G        P  T    E   SFA N   Y
Sbjct: 129 GIKIVIDFAPNHTSPAMETDTSFAENGRLY 158

>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin Glycosyltransferase Length = 678

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 31/121 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQ++   F D N          D T         GD +G+  K++  +F D
Sbjct: 9   KQSFSTDVIYQVFTDRFLDGNPSNNPTGAAYDATCSNLKLYCGGDWQGLINKINDNYFSD 68
Query: 65  LGIESLWI-QPFYP----------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           LG+ +LWI QP                A  GY   ++   +P FG M DF+ LI  AH++
Sbjct: 69  LGVTALWISQPVENIFATINYSGVTNTAYHGYWARDFKKTNPYFGTMADFQNLITTAHAK 128
Query: 114 G 114
           G
Sbjct: 129 G 129

>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The Pyrococcus Length = 645

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 19  QVELPQKEWWQTAIMYQIYPRSF---RDVNGDGT-------GDMRGITEKLDHFVDLGIE 68
            +E P   W    + YQI P  F   R + G          GD+ GI EK+DH V+LGI 
Sbjct: 197 SIEFPT--WVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKIDHLVNLGIN 254
Query: 69  SLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
           ++++ P + +     GYD+ +Y  V    G    F  L+ E
Sbjct: 255 AIYLTPIFSSLTYH-GYDIVDYFHVARRLGGDRAFVDLLSE 294

>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant Enzyme W398v Length = 637

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
           +W +  +MYQI+P  F   NGD +                                    
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50  --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
             GD+ GI +KL +    LG   L++ P + A   +  YD  +Y+ VDP FGD    + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
           I + HS
Sbjct: 245 INDIHS 250

>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant Enzyme F313a Length = 637

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
           +W +  +MYQI+P  F   NGD +                                    
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50  --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
             GD+ GI +KL +    LG   L++ P + A   +  YD  +Y+ VDP FGD    + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
           I + HS
Sbjct: 245 INDIHS 250

>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47 Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2, A Pullulan Model Oligosaccharide Length = 637

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
           +W +  +MYQI+P  F   NGD +                                    
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50  --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
             GD+ GI +KL +    LG   L++ P + A   +  YD  +Y+ VDP FGD    + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
           I + HS
Sbjct: 245 INDIHS 250

>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose Complex Length = 637

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
           +W +  +MYQI+P  F   NGD +                                    
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50  --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
             GD+ GI +KL +    LG   L++ P + A   +  YD  +Y+ VDP FGD    + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
           I + HS
Sbjct: 245 INDIHS 250

>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris R- 47 Alpha-amylase 1 Length = 637

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 42/126 (33%)
Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
           +W +  +MYQI+P  F   NGD +                                    
Sbjct: 128 DWLKNGVMYQIFPDRF--YNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185
Query: 50  --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
             GD+ GI +KL +    LG   L++ P + A   +  YD  +Y+ VDP FGD    + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAP-TNHKYDTQDYMAVDPAFGDNSTLQTL 244
Query: 107 IEEAHS 112
           I + HS
Sbjct: 245 INDIHS 250

>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical Maltooligosyl Trehalose Synthase Length = 704

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 55  ITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           I  +LD+FV+LG+  L++ P   A  G+  GYDV +Y  ++   G   ++  LI+EA S+
Sbjct: 17  IRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSK 76
Query: 114 G 114
           G
Sbjct: 77  G 77

>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (D252s) Length = 558

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
           I+Y+I+  +F        G   G+  KLD+  DLGI ++ I P   +P G  D GYD   
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90  YVDVDPLFGDMHDFEILIEEAHSRG 114
              V   +G    F  L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181

>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase (E283q) Complexed With Maltoheptaose Length = 558

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
           I+Y+I+  +F        G   G+  KLD+  DLGI ++ I P   +P G  D GYD   
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90  YVDVDPLFGDMHDFEILIEEAHSRG 114
              V   +G    F  L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181

>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase (D252e) Length = 558

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
           I+Y+I+  +F        G   G+  KLD+  DLGI ++ I P   +P G  D GYD   
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90  YVDVDPLFGDMHDFEILIEEAHSRG 114
              V   +G    F  L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181

>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Glycosyltrehalose Trehalohydrolase Length = 558

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
           I+Y+I+  +F        G   G+  KLD+  DLGI ++ I P   +P G  D GYD   
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90  YVDVDPLFGDMHDFEILIEEAHSRG 114
              V   +G    F  L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181

>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase From Sulfolobus Solfataricus Length = 558

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPF--YPAGGADLGYDVSN 89
           I+Y+I+  +F        G   G+  KLD+  DLGI ++ I P   +P G  D GYD   
Sbjct: 103 IIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFP-GKRDWGYDGVY 156
Query: 90  YVDVDPLFGDMHDFEILIEEAHSRG 114
              V   +G    F  L++EAH +G
Sbjct: 157 LYAVQNSYGGPEGFRKLVDEAHKKG 181

>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus Stearothermophilus, MaltoseACARBOSE COMPLEX Length = 686

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFYP-----AGGADLGYD---VSNYVDVDPLFGDMH 101
           GD+ G+ +KL +   LG+ ++W+ P        AG  + GY      ++  ++  FG+  
Sbjct: 49  GDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWT 108
Query: 102 DFEILIEEAHSRG 114
            F+ L+ +AH  G
Sbjct: 109 TFDTLVNDAHQNG 121

>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN Glucanotransferase Complexed With A Pseudo-Maltotetraose Derived From Acarbose Length = 686

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DG+         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
           +GI ++WI QP    Y           A  GY   ++   +P +G M DF+ LI+ AH+
Sbjct: 69  MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127

>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase) Length = 680

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 12/77 (15%)
Query: 50  GDMRGITEKLD--HFVDLGIESLWI-QPFY--------PAGGADL-GYDVSNYVDVDPLF 97
           GD +GI  K++  +  D+G+ ++WI QP           +G A   GY   ++   +P F
Sbjct: 49  GDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFF 108
Query: 98  GDMHDFEILIEEAHSRG 114
           G + DF+ L++ AH++G
Sbjct: 109 GTLSDFQRLVDAAHAKG 125

>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin Glycosyltransferase Length = 686

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DG+         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
           +GI ++WI QP    Y           A  GY   ++   +P +G M DF+ LI+ AH+
Sbjct: 69  MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127

>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin Glycosyltransferase Length = 686

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DG+         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
           +GI ++WI QP    Y           A  GY   ++   +P +G M DF+ LI+ AH+
Sbjct: 69  MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127

>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin Glucanotransferase From Alkalophilic Bacillus Sp. 1011 Determined At 1.9 A Resolution Length = 686

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DG+         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
           +GI ++WI QP    Y           A  GY   ++   +P +G M DF+ LI+ AH+
Sbjct: 69  MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127

>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase Length = 686

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 31/119 (26%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DG+         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHS 112
           +GI ++WI QP    Y           A  GY   ++   +P +G M DF+ LI+ AH+
Sbjct: 69  MGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHA 127

>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus Geothermalis Length = 655

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 49  TGDMRGITEKLDHFVDLGIESLWIQPFYPA--GGADLGYDVSNYVDVDPLFGDMHDFEIL 106
            G ++G+ E+LD+   LG++ L + P      G  D GY V +Y  V P  G M D   L
Sbjct: 107 AGTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLGTMDDLSAL 166
Query: 107 IEEAHSRG 114
                 RG
Sbjct: 167 ARALRGRG 174

>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase Amyb From Thermotoga Neapolitana Length = 422

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 29  QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG----GADLG 84
           +  I+Y+ + R++    G+       + + L+    +GI ++W+ P +P G       LG
Sbjct: 4   KNLIIYEAFARAY---PGEKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKGTLG 60
Query: 85  --YDVSNYVDVDPLFGDMHDFEILIEEAHS 112
             Y + +Y ++D L G   DF+  ++ AH 
Sbjct: 61  SPYAIRDYYEIDLLIGTKGDFKKFVKRAHE 90

>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From Bacillus Circulans Strain 251 Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135n Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant D135a Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus Circulans Strain 251 Cgtase E257qD229N Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 In A Maltose-Dependent Crystal Form Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl Transferase Mutant G179l Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase In Complex With Maltoheptaose Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From Bacillus Circulans Strain 251 Affecting Activity And Product Specificity Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl Transferase Mutant N193g Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus Circulans Strain 251 Cgtase E257q Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|2WPG|A Chain A, Sucrose Hydrolase Length = 637

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
           G +RG+ E++ +  +LG+  L + PF    AG  D G+ VS+Y  V+P  G   D   L
Sbjct: 104 GTLRGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPALGSNDDLVAL 162

>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QPF--------YPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP         Y      A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN Hexasaccharide Inhibitor Length = 686

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 31/120 (25%)
Query: 25  KEWWQTAIMYQIYPRSFRDVNG---------DGT---------GDMRGITEKLD--HFVD 64
           K+ + T ++YQI+   F D N          DGT         GD +GI  K++  +   
Sbjct: 9   KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTG 68
Query: 65  LGIESLWI-QP---FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           +G+ ++WI QP    Y           A  GY   ++   +P +G + DF+ LI  AH++
Sbjct: 69  MGVTAIWISQPVENIYSIINDSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAK 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1zja_A	557	Trehalulose synthase; sucrose isomerase, alpha-amy	4e-47
1m53_A	570	Isomaltulose synthase; klebsiella SP. LX3, sucrose	8e-47
2zic_A	543	Dextran glucosidase; TIM barrel, (beta/alpha)8-bar	1e-46
2ze0_A	555	Alpha-glucosidase; TIM barrel, glucoside hydrolase	2e-46
1uok_A	558	Oligo-1,6-glucosidase; sugar degradation, hydrolas	3e-46
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	4e-46
3k8k_A	669	Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet	2e-43
1wza_A	488	Alpha-amylase A; hydrolase, halophilic, thermophil	1e-41
1lwj_A	441	4-alpha-glucanotransferase; alpha-amylase family,	4e-41
2dh2_A	424	4F2 cell-surface antigen heavy chain; TIM-barrel,	8e-41
3dhu_A	449	Alpha-amylase; structural genomics, hydrolase, gly	4e-32
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	2e-30
2z1k_A	475	(NEO)pullulanase; hydrolase, structural genomics,	1e-28
1g5a_A	628	Amylosucrase; glycosyltransferase, glycoside hydro	2e-27
3ucq_A	655	Amylosucrase; thermostability, amylose synthesis,	2e-27
3czg_A	644	Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC;	3e-27
2wc7_A	488	Alpha amylase, catalytic region; CD/PUL-hydrolyzin	4e-25
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	7e-25
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	1e-24
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	2e-24
3hje_A	704	704AA long hypothetical glycosyltransferase; treha	2e-24
1gjw_A	637	Maltodextrin glycosyltransferase; alpha-amylase, m	6e-24
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	2e-23
3edf_A	601	FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c	3e-23
2guy_A	478	Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase;	1e-21
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	5e-21
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	1e-20
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	1e-20
1iv8_A	720	Maltooligosyl trehalose synthase; beta alpha barre	1e-20
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	1e-20
2aaa_A	484	Alpha-amylase; glycosidase; 2.10A {Aspergillus nig	3e-20
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	8e-20
3bc9_A	599	AMYB, alpha amylase, catalytic region; acarbose, t	5e-19
1hvx_A	515	Alpha-amylase; hydrolase, glycosyltransferase, the	3e-17
1ht6_A	405	AMY1, alpha-amylase isozyme 1; barley, beta-alpha-	3e-17
3bh4_A	483	Alpha-amylase; calcium, carbohydrate metabolism, g	8e-17
3aie_A	844	Glucosyltransferase-SI; beta-alpha-barrels; HET: M	1e-16
1r7a_A	504	Sucrose phosphorylase; beta-alpha-barrels, dimer,	4e-16
1ud2_A	480	Amylase, alpha-amylase; calcium-free, alkaline, hy	1e-15
1wpc_A	485	Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr	2e-14
1mxg_A	435	Alpha amylase; hyperthermostable, family 13 glycos	1e-11
1ua7_A	422	Alpha-amylase; beta-alpha-barrels, acarbose, greek	8e-11
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	8e-08
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	2e-05
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	2e-05
1g94_A	448	Alpha-amylase; beta-alpha-8-barrel, 3 domain struc	2e-04
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	3e-04

>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* Length = 557

 Score =  158 bits (402), Expect = 4e-47
 Identities = 46/92 (50%), Positives = 64/92 (69%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
           P   WW++A+ YQ+YPRSF+D NGDG GD +G+TEKLD+   LGI+++WI P Y +   D
Sbjct: 2   PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTD 61

Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYD+S+Y +V   +G M DF+ L+ E   RG
Sbjct: 62  NGYDISDYREVMKEYGTMEDFDRLMAELKKRG 93

>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1 Length = 570

 Score =  157 bits (400), Expect = 8e-47
 Identities = 47/96 (48%), Positives = 61/96 (63%)

Query: 19  QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA 78
           Q E     WW+ A+ YQIYPRSF+D N DG GD+RGI EKLD+   LGI+++WI P Y +
Sbjct: 11  QKESEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDS 70

Query: 79  GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
              D GYD+SNY  +   +G M DF+ L+ E   R 
Sbjct: 71  PNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 106

>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A* Length = 543

 Score =  156 bits (398), Expect = 1e-46
 Identities = 44/91 (48%), Positives = 62/91 (68%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           QK WW  A +YQIYP+SF D NGDG GD++GIT KLD+   LG+ ++W+ P Y +   D 
Sbjct: 2   QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDN 61

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD++NY  +  +FG+M D + L+ +A  RG
Sbjct: 62  GYDIANYEAIADIFGNMADMDNLLTQAKMRG 92

>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP} Length = 555

 Score =  156 bits (397), Expect = 2e-46
 Identities = 49/91 (53%), Positives = 65/91 (71%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           +K WW+  + YQIYPRSF D NGDG GD+RGI EKLD+ V+LG++ +WI P Y +  AD 
Sbjct: 2   KKTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADN 61

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD+S+Y  +   FG M DF+ L+ +AH RG
Sbjct: 62  GYDISDYYAIMDEFGTMDDFDELLAQAHRRG 92

>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1 Length = 558

 Score =  156 bits (396), Expect = 3e-46
 Identities = 44/91 (48%), Positives = 63/91 (69%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           +K+WW+ +++YQIYPRSF D NGDG GD+RGI  KLD+  +LGI+ +W+ P Y +   D 
Sbjct: 2   EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDN 61

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD+S+Y  +   FG M D++ L+ E H R 
Sbjct: 62  GYDISDYCKIMNEFGTMEDWDELLHEMHERN 92

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A* Length = 589

 Score =  156 bits (396), Expect = 4e-46
 Identities = 43/92 (46%), Positives = 60/92 (65%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
            + +WW+ A  YQIYP SF+D N DG GDM+GI  KL++  +LG +++WI PFY +   D
Sbjct: 10  TEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWISPFYDSPQDD 69

Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +GYD++NY  V P +G   D   LIE+ H  G
Sbjct: 70  MGYDIANYEKVWPTYGTNEDCFALIEKTHKLG 101

>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A* Length = 669

 Score =  149 bits (379), Expect = 2e-43
 Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD 82
              E  +  I YQ+   SF D +GDG GD+ G+T+KLD+   LG+++LW+ P +P   + 
Sbjct: 30  TWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPC-MSY 88

Query: 83  LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GYDV++Y  V+P  G   DF+ L+ EAH+RG
Sbjct: 89  HGYDVTDYTKVNPQLGTESDFDRLVTEAHNRG 120

>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1 Length = 488

 Score =  142 bits (361), Expect = 1e-41
 Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 9/96 (9%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPA 78
           + +    Y+I+ RSF D +GDG GD++GI EKLD+          DLG+  +W+ P + +
Sbjct: 1   FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS 60

Query: 79  GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
                GYDV++Y  ++P +G + DF  L+E AH RG
Sbjct: 61  PSYH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95

>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A* Length = 441

 Score =  140 bits (355), Expect = 4e-41
 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
           I YQIY RSFRD N DG GD RG+   + +  +LGI+ +W+ P + +  +  GYDV ++ 
Sbjct: 2   IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSS-ISFHGYDVVDFY 60

Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
                +G   +F+ +IE  H  G
Sbjct: 61  SFKAEYGSEREFKEMIEAFHDSG 83

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A Length = 424

 Score =  139 bits (352), Expect = 8e-41
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 21  ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
           ELP ++WW T  +Y+I     +   G G G++ G+  +LD+   L ++ L + P +    
Sbjct: 6   ELPAQKWWHTGALYRI--GDLQAFQGHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK 63

Query: 81  ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            D+    ++ + +DP FG   DF+ L++ A  + 
Sbjct: 64  DDVAQ--TDLLQIDPNFGSKEDFDSLLQSAKKKS 95

>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} Length = 449

 Score =  116 bits (293), Expect = 4e-32
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 25  KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL- 83
           +   +  ++Y ++ R++ +      G+  G+T  L    DLG + LW+ P  P G  +  
Sbjct: 7   QTQLRNEMIYSVFVRNYSE-----AGNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRK 61

Query: 84  -----GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
                 Y + +Y  ++P +G + DF+ L + AH  G
Sbjct: 62  GTLGSPYAIKDYRGINPEYGTLADFKALTDRAHELG 97

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score =  113 bits (285), Expect = 2e-30
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 18/106 (16%)

Query: 26  EWWQTAIMYQIYPRSFR--DVNGDGT---------------GDMRGITEKLDHFVDLGIE 68
            W+   + YQI+  SF   D N D                 GD+ GI + +DH  DLG+E
Sbjct: 221 RWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVE 280

Query: 69  SLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           ++++ P + +      YD  +Y  +D   G M DFE L++  HSR 
Sbjct: 281 TIYLTPIFSSTSYH-RYDTIDYKSIDKYLGTMEDFEKLVQVLHSRK 325

>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} Length = 475

 Score =  107 bits (269), Expect = 1e-28
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 22/109 (20%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVDL 65
           W++ A  YQI+P  F      G                      G + G+ EKL + +DL
Sbjct: 3   WYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDL 62

Query: 66  GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           G+E++++ P + +  A+  Y   +Y  VDP+ G       L+E AH+ G
Sbjct: 63  GVEAIYLNPVFAST-ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHG 110

>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A* Length = 628

 Score =  104 bits (261), Expect = 2e-27
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLG 84
                +    Y   F        GD++G+ +K+ +F +LG+  L + P +  P G +D G
Sbjct: 94  LSNKQVGGVCYVDLFA-------GDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGG 146

Query: 85  YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           Y VS+Y DV+P  G + D   +I   H  G
Sbjct: 147 YAVSSYRDVNPALGTIGDLREVIAALHEAG 176

>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A* Length = 655

 Score =  104 bits (261), Expect = 2e-27
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 23  PQKEWWQ--TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PA 78
            + +W Q    + Y  Y   F        G ++G+ E+LD+   LG++ L + P      
Sbjct: 86  LRPDWLQRPEMVGYVAYTDRF-------AGTLKGVEERLDYLEGLGVKYLHLMPLLRPRE 138

Query: 79  GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           G  D GY V +Y  V P  G M D   L      RG
Sbjct: 139 GENDGGYAVQDYRAVRPDLGTMDDLSALARALRGRG 174

>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A Length = 644

 Score =  104 bits (260), Expect = 3e-27
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 23  PQKEWWQTAIM--YQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PA 78
               W+    M  Y  Y   F        G ++G+ E++ +  +LG+  L + PF    A
Sbjct: 81  RHAGWFGQPHMLGYSAYADRF-------AGTLQGVAERVPYLQELGVRYLHLLPFLRARA 133

Query: 79  GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           G  D G+ VS+Y  V+P  G   D   L       G
Sbjct: 134 GDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAG 169

>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A Length = 488

 Score = 98.2 bits (245), Expect = 4e-25
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 23/111 (20%)

Query: 26  EWWQTAIMYQIYPRSFRD----------------------VNGDGTGDMRGITEKLDHFV 63
           +W + A+ YQI+P  F                        + G   GD+ GI E LD+  
Sbjct: 7   DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQ 66

Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LGI +++  P + +      Y   +Y  VDP+ G    F+ L++ AH R 
Sbjct: 67  NLGINAIYFTPIFQSASNH-RYHTHDYYQVDPMLGGNEAFKELLDAAHQRN 116

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 Length = 583

 Score = 97.4 bits (243), Expect = 7e-25
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 24/110 (21%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVD 64
            W + AI YQI+P  F   NGD                       GD++G+ + LDH   
Sbjct: 126 AWVKDAIFYQIFPERFA--NGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSK 183

Query: 65  LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           LG+ +++  P + A      YD  +Y  +DP FGD    + L++  H RG
Sbjct: 184 LGVNAVYFTPLFKATTNH-KYDTEDYFQIDPQFGDKDTLKKLVDLCHERG 232

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A Length = 585

 Score = 96.7 bits (241), Expect = 1e-24
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 25/111 (22%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT----------------------GDMRGITEKLDHFV 63
           EW + A++YQI+P  F   NGD +                      GD++G+ ++L +  
Sbjct: 126 EWAKEAVIYQIFPERFA--NGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLE 183

Query: 64  DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           +LG+ +L+  P + +      YD ++Y+ +DP FGD+  F  L++EAH RG
Sbjct: 184 ELGVTALYFTPIFASPSHH-KYDTADYLAIDPQFGDLPTFRRLVDEAHRRG 233

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A* Length = 588

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 24/110 (21%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVD 64
           +W +  + YQI+P  F   NG+ +                     GD++GI + LD+ VD
Sbjct: 130 DWVKDTVWYQIFPERFA--NGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVD 187

Query: 65  LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           LGI  +++ P + +      YD ++Y +VDP FGD    + LI+  H +G
Sbjct: 188 LGITGIYLTPIFRSPSNH-KYDTADYFEVDPHFGDKETLKTLIDRCHEKG 236

>3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str} Length = 704

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 12/82 (14%)

Query: 34  YQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVD 92
           Y++ P  F +           I  +LD+FV+LG+  L++ P   A  G+  GYDV +Y  
Sbjct: 7   YRLQPMKFSE-----------IRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNT 55

Query: 93  VDPLFGDMHDFEILIEEAHSRG 114
           ++   G   ++  LI+EA S+G
Sbjct: 56  INDELGGEEEYIRLIDEAKSKG 77

>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A* Length = 637

 Score = 94.9 bits (235), Expect = 6e-24
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 28/120 (23%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDG--------------TGDMRGITEKLDHFVDLGIE 68
              +W + +++Y   PR+    N  G               G    +   L     LG +
Sbjct: 76  KTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGAD 135

Query: 69  SLWIQPFYPA------GGADLGYDVSNYVDVD--------PLFGDMHDFEILIEEAHSRG 114
           ++++ P          G A   Y V N +++D          F    +F+  +E  H  G
Sbjct: 136 AIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILG 195

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A* Length = 695

 Score = 93.4 bits (232), Expect = 2e-23
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 21/111 (18%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA-- 81
           ++E       Y+ +PRS         G  R    +L     +G + +++ P +P G    
Sbjct: 225 ERERALYGAWYEFFPRSE-GTPHTPHGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHR 283

Query: 82  ------------------DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
                              +G     +  + P  G + DF+  + EA   G
Sbjct: 284 KGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDDFDHFVTEAGKLG 334

>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A Length = 601

 Score = 93.0 bits (231), Expect = 3e-23
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 26/114 (22%)

Query: 25  KEWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFV 63
           + +     +YQI P  F   NGD +                     GD+RG  + LD+  
Sbjct: 101 QGFGPGDAIYQIMPDRFA--NGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIA 158

Query: 64  DLGIESLWIQPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            LG   LW  P      A     GY  +++  +DP +G   DF  L  EA  RG
Sbjct: 159 GLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRG 212

>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A Length = 478

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 23/110 (20%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT--------------GDMRGITEKLDHFVDLGIESLW 71
             W++  +Y +    F     DG+              G  +GI +KLD+   +G  ++W
Sbjct: 4   ADWRSQSIYFLLTDRFA--RTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIW 61

Query: 72  IQP-------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           I P           G A  GY   +   ++  +G   D + L    H RG
Sbjct: 62  ITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERG 111

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A* Length = 686

 Score = 86.4 bits (214), Expect = 5e-21
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 33/120 (27%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT-----------------------GDMRGITEKLDHF 62
              +  ++YQI    F   +GD T                       GD+ G+ +KL + 
Sbjct: 4   ASVKGDVIYQIIIDRF--YDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYL 61

Query: 63  VDLGIESLWI-----QPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
             LG+ ++W+          AG  +    GY   ++  ++  FG+   F+ L+ +AH  G
Sbjct: 62  KQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNG 121

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 Length = 680

 Score = 85.7 bits (212), Expect = 1e-20
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 34/124 (27%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEKLD-- 60
             K  + + ++YQI    F   +G+ +                    GD +GI  K++  
Sbjct: 4   LNKVNFTSDVVYQIVVDRFV--DGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDG 61

Query: 61  HFVDLGIESLWI-----QPFYPAGGADL-----GYDVSNYVDVDPLFGDMHDFEILIEEA 110
           +  D+G+ ++WI       F     A       GY   ++   +P FG + DF+ L++ A
Sbjct: 62  YLTDMGVTAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAA 121

Query: 111 HSRG 114
           H++G
Sbjct: 122 HAKG 125

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ... Length = 686

 Score = 85.7 bits (212), Expect = 1e-20
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 35/125 (28%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEKLD-- 60
             K+ + T ++YQI+   F   +G+                      GD +GI  K++  
Sbjct: 7   SNKQNFSTDVIYQIFTDRF--SDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDG 64

Query: 61  HFVDLGIESLWI-----QPFYPAGGADL------GYDVSNYVDVDPLFGDMHDFEILIEE 109
           +   +G+ ++WI       +     + +      GY   ++   +P +G + DF+ LI  
Sbjct: 65  YLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAA 124

Query: 110 AHSRG 114
           AH++ 
Sbjct: 125 AHAKN 129

>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1 Length = 720

 Score = 85.8 bits (212), Expect = 1e-20
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 38  PRS---FRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQP-FYPAGGADLGYDVSNYVDV 93
             +    +        +   + + L +F DLG+  L++ P    + G++ GYDV ++  +
Sbjct: 2   ISATYRLQLNKNF---NFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRI 58

Query: 94  DPLFGDMHDFEILIEEAHSRG 114
           +   G   ++  LIE AH+ G
Sbjct: 59  NDELGGEKEYRRLIETAHTIG 79

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A Length = 637

 Score = 85.2 bits (211), Expect = 1e-20
 Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 42/128 (32%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT------------------------------------ 49
           +W +  +MYQI+P  F   NGD +                                    
Sbjct: 128 DWLKNGVMYQIFPDRFY--NGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF 185

Query: 50  --GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
             GD+ GI +KL +    LG   L++ P + A      YD  +Y+ VDP FGD    + L
Sbjct: 186 FGGDLAGIDQKLGYIKKTLGANILYLNPIFKAPTNH-KYDTQDYMAVDPAFGDNSTLQTL 244

Query: 107 IEEAHSRG 114
           I + HS  
Sbjct: 245 INDIHSTA 252

>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1 Length = 484

 Score = 84.0 bits (208), Expect = 3e-20
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 28  WQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQP- 74
           W+T  +Y +    F   +   T            G  +GI + LD+   +G  ++WI P 
Sbjct: 6   WRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPI 65

Query: 75  ------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
                     G A  GY      DV+  FG   + + L +  H+RG
Sbjct: 66  TEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALHARG 111

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A Length = 683

 Score = 83.0 bits (205), Expect = 8e-20
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 36/130 (27%)

Query: 19  QVELPQKEWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEK 58
              +     + T ++YQI    F  V+G+ +                    GD +GI  K
Sbjct: 3   DTAVSNVVNYSTDVIYQIVTDRF--VDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINK 60

Query: 59  LD--HFVDLGIESLWIQP-------FYPAGGADL-----GYDVSNYVDVDPLFGDMHDFE 104
           ++  +   +G+ ++WI           P           GY   ++   +P FG   DF+
Sbjct: 61  INDGYLTGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQ 120

Query: 105 ILIEEAHSRG 114
            LI  AH+  
Sbjct: 121 NLINTAHAHN 130

>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A Length = 599

 Score = 81.1 bits (200), Expect = 5e-19
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 4   RIFLAFLGFLSLVSCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFV 63
           + ++ FL   S      +         A  +++    +   + +       + E+     
Sbjct: 101 QGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELA 160

Query: 64  DLGIESLWIQPFY--PAGGADLGYDVSNYVD---------VDPLFGDMHDFEILIEEAHS 112
           + G  ++W+ P     AG  D+GY   +  D         V   +G   + E  I+  H+
Sbjct: 161 EAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGTVRTKYGTKGELENAIDALHN 220

Query: 113 RG 114
             
Sbjct: 221 ND 222

>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1 Length = 515

 Score = 75.6 bits (186), Expect = 3e-17
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 14/93 (15%)

Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNY 90
            M Q     F     D       +  + ++   LGI +LW+ P Y     +D+GY V + 
Sbjct: 7   TMMQ----YFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDL 62

Query: 91  VD---------VDPLFGDMHDFEILIEEAHSRG 114
            D         V   +G    +   I+ AH+ G
Sbjct: 63  YDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAG 95

>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A* Length = 405

 Score = 75.5 bits (186), Expect = 3e-17
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 34  YQIYPRSF-RDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
           +Q+  + F  +      G    +  K+D     G+  +W+ P      ++ GY      D
Sbjct: 1   HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSH-SVSNEGYMPGRLYD 59

Query: 93  VDP-LFGDMHDFEILIEEAHSRG 114
           +D   +G+  + + LI   H +G
Sbjct: 60  IDASKYGNAAELKSLIGALHGKG 82

>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A Length = 483

 Score = 74.5 bits (183), Expect = 8e-17
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 31  AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSN 89
             + Q +         DG    + +    +H  D+GI ++WI P Y     +D GY   +
Sbjct: 3   GTLMQYF---EWYTPNDG-QHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYD 58

Query: 90  YVD---------VDPLFGDMHDFEILIEEAHSRG 114
             D         V   +G   + +  I   HSR 
Sbjct: 59  LYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRN 92

>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A* Length = 844

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 18/100 (18%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-------- 78
            ++    +Q +     +           I + +D F + G+    + P Y +        
Sbjct: 613 MFEGFSNFQAFATKKEEYTN------VVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLD 666

Query: 79  GGADLGYDVSNYVD----VDPLFGDMHDFEILIEEAHSRG 114
                GY  ++  D        +G   D    I+  HS+G
Sbjct: 667 SVIQNGYAFTDRYDLGISKPNKYGTADDLVKAIKALHSKG 706

>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Length = 504

 Score = 72.5 bits (178), Expect = 4e-16
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 44  VNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFGDMHD 102
            +  G G ++ +T+ L    D   + + I PF+ P  GAD G+D  ++  VD   G   D
Sbjct: 11  ADRLGDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDD 70

Query: 103 FEILIEE 109
              L + 
Sbjct: 71  VAELSKT 77

>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A Length = 480

 Score = 71.1 bits (174), Expect = 1e-15
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 11/82 (13%)

Query: 43  DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
            +  DG      + +      D GI ++WI P Y     AD+GY   +  D         
Sbjct: 14  HLENDG-QHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGT 72

Query: 93  VDPLFGDMHDFEILIEEAHSRG 114
           V   +G     E  I    S  
Sbjct: 73  VRTKYGTKAQLERAIGSLKSND 94

>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A* Length = 485

 Score = 67.2 bits (164), Expect = 2e-14
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 43  DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
            +  DG      +     +    GI ++WI P +      D+GY   +  D         
Sbjct: 16  YLPNDG-NHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGT 74

Query: 93  VDPLFGDMHDFEILIEEAHSRG 114
           V   +G     +  +    + G
Sbjct: 75  VRTKYGTRSQLQAAVTSLKNNG 96

>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A* Length = 435

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADL 83
           E  +  ++ Q +   + DV G G      I  K+  + + GI ++W+ P     +GG  +
Sbjct: 5   ELEEGGVIMQAF---YWDVPGGG-IWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSM 60

Query: 84  GYDVSNYVD---------VDPLFGDMHDFEILIEEAHSRG 114
           GYD  +Y D         V+  FG   +   LI+ AH+ G
Sbjct: 61  GYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYG 100

>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A Length = 422

 Score = 57.1 bits (138), Expect = 8e-11
 Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 10/75 (13%)

Query: 50  GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL----------GYDVSNYVDVDPLFGD 99
                +   +    D G  ++   P       +            Y  ++Y   +   G 
Sbjct: 14  WSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGT 73

Query: 100 MHDFEILIEEAHSRG 114
             +F+ +   A   G
Sbjct: 74  EQEFKEMCAAAEEYG 88

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A* Length = 527

 Score = 48.5 bits (115), Expect = 8e-08
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 11/82 (13%)

Query: 43  DVNGDGTGDM-RGITEKLDHFVDLGIESLWIQPFY---------PAGGADLGYDVSNYVD 92
           +V  +   D    + ++       G  ++W+   +            G   GY   ++ +
Sbjct: 26  NVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-N 84

Query: 93  VDPLFGDMHDFEILIEEAHSRG 114
            +  +G               G
Sbjct: 85  KNGRYGSDAQLRQAASALGGAG 106

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp} Length = 618

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 28  WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLWIQPFYPAGGADLG 84
           W+ A++Y+++  +F        G  R    KL +  +LG   IE + +  F   G    G
Sbjct: 134 WEQAVVYEMHTGTFTP-----EGTFRAAIAKLPYLAELGVTVIEVMPVAQF--GGERGWG 186

Query: 85  YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           YD          +G   DF+  I+ AH  G
Sbjct: 187 YDGVLLYAPHSAYGTPDDFKAFIDAAHGYG 216

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A Length = 558

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 12/94 (12%)

Query: 26  EW--WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLWIQPFYPAGG 80
            +   +  I+Y+I+  +F        G   G+  KLD+  DLG   IE + I  F   G 
Sbjct: 95  TFLKKEDLIIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQF--PGK 147

Query: 81  ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            D GYD      V   +G    F  L++EAH +G
Sbjct: 148 RDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKG 181

>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A* Length = 448

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 53  RGITEKLDHFV-DLGIESLWIQPFY--PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
           + + ++ + ++   G  ++ + P      G            ++    G+   F  ++  
Sbjct: 14  QDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNR 73

Query: 110 AHSRG 114
             + G
Sbjct: 74  CSAAG 78

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A* Length = 602

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 28  WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLG---IESLWIQPFYPAGGADLG 84
               + Y+++  +F        G  R   EKL +  +LG   I+ + +  F   G    G
Sbjct: 124 LADCVFYEVHVGTFTP-----EGTYRAAAEKLPYLKELGVTAIQVMPLAAF--DGQRGWG 176

Query: 85  YDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           YD + +      +G   D   L++ AH  G
Sbjct: 177 YDGAAFYAPYAPYGRPEDLMALVDAAHRLG 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
4aie_A	549	Glucan 1,6-alpha-glucosidase; hydrolase, glycoside	100.0
1zja_A	557	Trehalulose synthase; sucrose isomerase, alpha-amy	100.0
3aj7_A	589	Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydro	99.98
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.98
1m53_A	570	Isomaltulose synthase; klebsiella SP. LX3, sucrose	99.98
2zic_A	543	Dextran glucosidase; TIM barrel, (beta/alpha)8-bar	99.98
1uok_A	558	Oligo-1,6-glucosidase; sugar degradation, hydrolas	99.97
2ze0_A	555	Alpha-glucosidase; TIM barrel, glucoside hydrolase	99.97
2wc7_A	488	Alpha amylase, catalytic region; CD/PUL-hydrolyzin	99.97
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.97
2dh2_A	424	4F2 cell-surface antigen heavy chain; TIM-barrel,	99.97
2guy_A	478	Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase;	99.97
2z1k_A	475	(NEO)pullulanase; hydrolase, structural genomics,	99.97
2aaa_A	484	Alpha-amylase; glycosidase; 2.10A {Aspergillus nig	99.97
1lwj_A	441	4-alpha-glucanotransferase; alpha-amylase family,	99.96
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	99.96
1wza_A	488	Alpha-amylase A; hydrolase, halophilic, thermophil	99.96
3edf_A	601	FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin c	99.96
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	99.96
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	99.96
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	99.96
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	99.96
3dhu_A	449	Alpha-amylase; structural genomics, hydrolase, gly	99.96
3k8k_A	669	Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, bet	99.95
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	99.95
3czg_A	644	Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC;	99.95
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	99.95
1g5a_A	628	Amylosucrase; glycosyltransferase, glycoside hydro	99.95
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	99.95
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	99.94
3bc9_A	599	AMYB, alpha amylase, catalytic region; acarbose, t	99.94
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	99.94
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	99.94
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	99.94
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	99.94
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	99.94
1ht6_A	405	AMY1, alpha-amylase isozyme 1; barley, beta-alpha-	99.93
3ucq_A	655	Amylosucrase; thermostability, amylose synthesis,	99.93
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	99.93
1mxg_A	435	Alpha amylase; hyperthermostable, family 13 glycos	99.93
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	99.93
1gjw_A	637	Maltodextrin glycosyltransferase; alpha-amylase, m	99.93
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	99.92
1wpc_A	485	Glucan 1,4-alpha-maltohexaosidase; maltohexaose-pr	99.92
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	99.92
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	99.92
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	99.92
3zss_A	695	Putative glucanohydrolase PEP1A; alpha-glucan bios	99.92
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	99.92
1ud2_A	480	Amylase, alpha-amylase; calcium-free, alkaline, hy	99.92
3bh4_A	483	Alpha-amylase; calcium, carbohydrate metabolism, g	99.91
1hvx_A	515	Alpha-amylase; hydrolase, glycosyltransferase, the	99.91
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	99.91
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	99.91
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	99.89
3aie_A	844	Glucosyltransferase-SI; beta-alpha-barrels; HET: M	99.89
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	99.89
1ua7_A	422	Alpha-amylase; beta-alpha-barrels, acarbose, greek	99.89
1g94_A	448	Alpha-amylase; beta-alpha-8-barrel, 3 domain struc	99.87
1jae_A	471	Alpha-amylase; glycosidase, carbohydrate metabolis	99.87
3klk_A	1039	Glucansucrase; native form, open conformation, mul	99.86
1iv8_A	720	Maltooligosyl trehalose synthase; beta alpha barre	99.85
1r7a_A	504	Sucrose phosphorylase; beta-alpha-barrels, dimer,	99.82
3ttq_A	1108	Dextransucrase; (beta/alpha)8 barrel, transferase;	99.82
4gqr_A	496	Pancreatic alpha-amylase; glycosyl hydrolase, diab	99.81
3hje_A	704	704AA long hypothetical glycosyltransferase; treha	99.8
1qnr_A	344	Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt	96.8
3qho_A	458	Endoglucanase, 458AA long hypothetical endo-1,4-be	96.74
1ece_A	358	Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.	96.61
3civ_A	343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	96.52
1hjs_A	332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	96.42
3n9k_A	399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	96.28
2whl_A	294	Beta-mannanase, baman5; glycoside hydrolase, hydro	96.27
1ur4_A	399	Galactanase; hydrolase, beta-1, glycoside hydrolas	96.08
1bqc_A	302	Protein (beta-mannanase); glycosyl hydrolase, fami	95.99
3vup_A	351	Beta-1,4-mannanase; TIM barrel, digestive fluid, H	95.91
1h4p_A	408	Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca	95.9
3pzt_A	327	Endoglucanase; alpha/beta barrel, glycosyl hydrola	95.89
3nco_A	320	Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1	95.87
3jug_A	345	Beta-mannanase; TIM-barrel, glycosidase, hydrolase	95.77
3icg_A	515	Endoglucanase D; cellulase, xylanase, carbohydrate	95.74
1fob_A	334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	95.7
1edg_A	380	Endoglucanase A; family A, cellulases, xylanases,	95.57
1ceo_A	343	Cellulase CELC; glycosyl hydrolase, family A/5 of	95.51
1esw_A	500	Amylomaltase; (beta,alpha)8-barrel, glucanotransfe	95.5
1vjz_A	341	Endoglucanase; TM1752, structural genomics, JCSG,	95.39
1wky_A	464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	95.32
1x1n_A	524	4-alpha-glucanotransferase; disproportionating enz	95.23
3aof_A	317	Endoglucanase; glycosyl hydrolase family 5, cellul	95.22
1uuq_A	440	Mannosyl-oligosaccharide glucosidase; hydrolase, m	95.2
1tz7_A	505	4-alpha-glucanotransferase; (beta, alpha)8- barrel	95.19
3ndz_A	345	Endoglucanase D; cellotriose, xylanase, carbohydra	95.17
3qr3_A	340	Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A	95.13
3gyc_A	393	Putative glycoside hydrolase; YP_001304622.1, stru	95.12
3a24_A	641	Alpha-galactosidase; glycoside hydrolase family 97	95.07
2jep_A	395	Xyloglucanase; family 5, plant cell WALL, hydrolas	95.03
2y8k_A	491	Arabinoxylanase, carbohydrate binding family 6; hy	94.96
3ayr_A	376	Endoglucanase; TIM barrel, hydrolase, carbohydrate	94.95
3pzg_A	383	Mannan endo-1,4-beta-mannosidase. glycosyl hydrol	94.94
2ki0_A	36	DS119; beta-alpha-beta, de novo protein; NMR {Synt	94.88
1tvn_A	293	Cellulase, endoglucanase G; glycoside hydrolase, C	94.87
3l55_A	353	B-1,4-endoglucanase/cellulase; putative beta-1,4-e	94.86
1rh9_A	373	Endo-beta-mannanase; endo-beta-mannase, retaining,	94.82
1egz_A	291	Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL	94.72
2c0h_A	353	Mannan endo-1,4-beta-mannosidase; hydrolase, signa	94.59
1g01_A	364	Endoglucanase; alpha/beta barrel, TIM barrel, hydr	94.55
2osx_A	481	Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel	94.39
1h1n_A	305	Endo type cellulase ENGI; hydrolase, glycosyl hydr	94.34
2wvv_A	450	Alpha-L-fucosidase; alpha-L-fucose, hydrolase, gly	94.16
3can_A	182	Pyruvate-formate lyase-activating enzyme; structur	94.04
2cks_A	306	Endoglucanase E-5; carbohydrate metabolism, polysa	94.02
4awe_A	387	Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana	93.97
7a3h_A	303	Endoglucanase; hydrolase, cellulose degradation, g	93.94
4h41_A	340	Putative alpha-L-fucosidase; hydrolase, carbohydra	93.58
3d3a_A	612	Beta-galactosidase; protein structure initiative I	93.52
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	93.5
3u7v_A	552	Beta-galactosidase; structural genomics, PSI-biolo	93.44
4e8d_A	595	Glycosyl hydrolase, family 35; TIM barrel, beta-pr	93.13
3thd_A	654	Beta-galactosidase; TIM-barrel domain, glycosyl hy	93.01
2d73_A	738	Alpha-glucosidase SUSB; glycoside hydrolase family	92.97
2w61_A	555	GAS2P, glycolipid-anchored surface protein 2; glyc	92.96
2yfo_A	720	Alpha-galactosidase-sucrose kinase agask; hydrolas	92.78
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	92.69
2xn2_A	732	Alpha-galactosidase; hydrolase, glycosidase; HET:	92.62
3og2_A	1003	Beta-galactosidase; TIM barrel domain, glycoside h	91.8
2zxd_A	455	Alpha-L-fucosidase, putative; TIM barrel, hydrolas	91.74
1kwg_A	645	Beta-galactosidase; TIM barrel, glycoside hydrolas	91.72
1yht_A	367	DSPB; beta barrel, hydrolase; 2.00A {Aggregatibact	91.7
1zy9_A	564	Alpha-galactosidase; TM1192, struc genomics, joint	91.54
3lpp_A	898	Sucrase-isomaltase; glycoside hydrolase family 31,	91.28
4hty_A	359	Cellulase; (alpha/beta)8 barrel, family 5 endogluc	90.99
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	90.9
3nsx_A	666	Alpha-glucosidase; structural genomics, PSI-2, pro	90.89
3mi6_A	745	Alpha-galactosidase; NESG, structural genomics, PS	90.71
1now_A	507	Beta-hexosaminidase beta chain; (beta/alpha)8-barr	90.67
1tg7_A	971	Beta-galactosidase; TIM barrel domain, glycoside h	90.65
1x7f_A	385	Outer surface protein; structural genomics, unknow	90.61
3kzs_A	463	Glycosyl hydrolase family 5; structural genomics,	90.43
3l4y_A	875	Maltase-glucoamylase, intestinal; glycoside hydrol	90.38
2gjx_A	507	Beta-hexosaminidase alpha chain; beta-hexosaminida	90.0
1ug6_A	431	Beta-glycosidase; glucosidase, atomic resolution,	89.78
3eyp_A	469	Putative alpha-L-fucosidase; structural genomics,	89.57
2j6v_A	301	UV endonuclease, UVDE; plasmid, TIM barrel, DNA re	89.21
2o9p_A	454	Beta-glucosidase B; family 1 glycoside hydrolase;	89.21
3ozo_A	572	N-acetylglucosaminidase; beta-N-acetyl-D-hexosamin	89.17
1vff_A	423	Beta-glucosidase; glycosyl hydrolase, membrane-bou	89.17
3c8f_A	245	Pyruvate formate-lyase 1-activating enzyme; adoMet	89.06
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	88.89
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	88.62
3ues_A	478	Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr	88.5
1jak_A	512	Beta-N-acetylhexosaminidase; glycoside hydrolase,	88.22
1uas_A	362	Alpha-galactosidase; TIM-barrel, beta-alpha-barrel	88.03
2p0o_A	372	Hypothetical protein DUF871; structural genomics,	87.92
3ahx_A	453	Beta-glucosidase A; cellulases, glycosyl hydrolase	87.85
2j78_A	468	Beta-glucosidase A; family 1, hydrolase, inhibitor	87.69
2g3m_A	693	Maltase, alpha-glucosidase; hydrolase, glycoside h	87.54
3rcn_A	543	Beta-N-acetylhexosaminidase; structural genomics,	87.51
1c7s_A	858	Beta-N-acetylhexosaminidase; glycosyl hydrolase, c	87.48
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	87.36
1szn_A	417	Alpha-galactosidase; (beta/alpha)8 barrel,TWO doma	87.34
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	87.34
2ebf_X	746	Dermonecrotic toxin; pasteurella multocida toxin,	87.06
2cho_A	716	Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro	86.79
3gh5_A	525	HEX1, beta-hexosaminidase; beta-N-acetylhexosamini	86.74
3fj0_A	465	Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase	86.66
3gza_A	443	Putative alpha-L-fucosidase; NP_812709.1, structur	86.1
1wcg_A	464	Thioglucosidase, myrosinase; aphid, beta-glucosida	86.06
2epl_X	627	N-acetyl-beta-D-glucosaminidase; glycoside hydrola	85.45
1w91_A	503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	85.44
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	84.89
1qox_A	449	Beta-glucosidase; hydrolase, cellulose degradation	83.87
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	83.78
4fnq_A	729	Alpha-galactosidase AGAB; glycoside hydrolase, hyd	83.78
2yl5_A	442	Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Str	83.72
3gnp_A	488	OS03G0212800 protein; beta-alpha barrel, glycosida	83.06
2v5d_A	737	O-GLCNACASE NAGJ; family 32 carbohydrate binding m	82.96
2e9l_A	469	Cytosolic beta-glucosidase; novel cytosolic neutra	82.91
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	82.89
1v08_A	512	Beta-glucosidase; glycoside hydrolase, dimboa-gluc	82.6
2xhy_A	479	BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase,	82.43
4hz8_A	444	Beta-glucosidase; BGLB,BGL, hydrolase, glycosid ba	82.14
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	81.79
1e4i_A	447	Beta-glucosidase; hydrolase, family 1 glycosyl hyd	81.75
3vmn_A	643	Dextranase; TIM barrel, immunoglobrin fold, greek-	81.56
3a21_A	614	Putative secreted alpha-galactosidase; beta-alpha-	81.02
3apg_A	473	Beta-glucosidase; TIM barrel, hydrolase, sugar bin	80.83
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	80.42
4ba0_A	817	Alpha-glucosidase, putative, ADG31B; hydrolase; HE	80.14
2yl6_A	434	Beta-N-acetylhexosaminidase; peptidoglycan-anchor,	80.07
2v5c_A	594	O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrol	80.07
1pbg_A	468	PGAL, 6-phospho-beta-D-galactosidase; hydrolase (g	80.01

>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}

Probab=100.00  E-value=1.8e-36  Score=250.57  Aligned_cols=106  Identities=39%  Similarity=0.857  Sum_probs=102.2

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      +++||++.||||+++++|+++++++.|||+|++++|+|||+||||+|||+||+++++.++||++.||++|||+|||++||
T Consensus         3 ~~~Ww~~~viYei~~~~F~d~~~dg~Gdl~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~df   82 (549)
T 4aie_A            3 SASWWKNAVVYQVYPKSFQDSNGDGIGDLQGIISRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADM   82 (549)
T ss_dssp             -CCGGGSCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHH
T ss_pred             CchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHH
Confidence            57899999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ++||++||++||+||+   +||++.+|++
T Consensus        83 k~Lv~~aH~~Gi~VilD~V~NHts~~~~w  111 (549)
T 4aie_A           83 DELISKAKEHHIKIVMDLVVNHTSDQHKW  111 (549)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             HHHHHHHHHCCCEEEEEECccCCcCCcch
Confidence            9999999999999999   9999988764

>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*

Probab=100.00  E-value=2e-33  Score=235.27  Aligned_cols=107  Identities=43%  Similarity=0.900  Sum_probs=103.2

Q ss_pred             CCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD  102 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~  102 (136)
                      |.+.||++.+||||++++|.++++++.|+|+|++++|+||++||||+|||+||++++..++||++.||++|||+|||++|
T Consensus         2 p~~~w~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~d   81 (557)
T 1zja_A            2 PGAPWWKSAVFYQVYPRSFKDTNGDGIGDFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMED   81 (557)
T ss_dssp             CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHH
T ss_pred             CcchhhhcCcEEEEEchHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHH
Confidence            56789999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        103 FEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       103 ~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      |++||++||++||+||+   +||++.+|++
T Consensus        82 f~~Lv~~aH~~Gi~VilD~V~NHts~~~~w  111 (557)
T 1zja_A           82 FDRLMAELKKRGMRLMVDVVINHSSDQHEW  111 (557)
T ss_dssp             HHHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             HHHHHHHHHHCCCEEEEEEeccccccchhH
Confidence            99999999999999999   9999988764

>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*

Probab=99.98  E-value=3.5e-33  Score=235.55  Aligned_cols=113  Identities=40%  Similarity=0.756  Sum_probs=106.7

Q ss_pred             hccCCCCCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCC
Q psy12953         17 SCQVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPL   96 (136)
Q Consensus        17 ~~~~~~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~   96 (136)
                      .++.+.+.+.||++.+|||+++++|.++++++.|+|+|++++|+||++||||+|||+||++++..++||++.||++|||+
T Consensus         4 ~~~~~~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~~GY~~~dy~~id~~   83 (589)
T 3aj7_A            4 SSAHPETEPKWWKEATFYQIYPASFKDSNDDGWGDMKGIASKLEYIKELGADAIWISPFYDSPQDDMGYDIANYEKVWPT   83 (589)
T ss_dssp             CTTCGGGSCCHHHHCCEEEECGGGSCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTT
T ss_pred             eccCCCCCccchhhCeEEEEEhHHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCcCcccccccccc
Confidence            34556677899999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         97 FGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        97 ~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      |||.+||++||++||++||+||+   +||++.+|++
T Consensus        84 ~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~w  119 (589)
T 3aj7_A           84 YGTNEDCFALIEKTHKLGMKFITDLVINHCSSEHEW  119 (589)
T ss_dssp             TCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEEEecccccccchhH
Confidence            99999999999999999999999   9999988864

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.98  E-value=1.7e-33  Score=239.21  Aligned_cols=108  Identities=27%  Similarity=0.458  Sum_probs=99.9

Q ss_pred             CCCccccCCceEEEEecccccCcCCC----------CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCC
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGD----------GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV   91 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~----------~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~   91 (136)
                      .+.|+||++++||||+|++|.++++.          .+|||+|++++|+||++||||+|||+||+++++ +|||++.||+
T Consensus       198 ~~~P~W~~~aViYqI~p~~F~~~~~~~g~~~~~~~~~gGdl~Gi~~kLdYLk~LGvt~I~L~Pif~s~~-~~GYd~~dy~  276 (645)
T 4aef_A          198 IEFPTWVIDRVFYQIMPDKFARSRKIQGIAYPKDKYWGGDLIGIKEKIDHLVNLGINAIYLTPIFSSLT-YHGYDIVDYF  276 (645)
T ss_dssp             CCCCGGGGGCCEEEECHHHHCCCSSCC---------CCCCHHHHHHTHHHHHHHTCCEEEECCCEEESS-TTCSSEEEEE
T ss_pred             CCCChhHcCCEEEEEecchhcCCCCCCcccCCcCcCCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCCC-CCCcCccCCC
Confidence            45689999999999999999987762          259999999999999999999999999999886 6999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         92 DVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        92 ~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      +|||+|||++||++||++||++||+||+   +||++..|+++
T Consensus       277 ~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHts~~h~wf  318 (645)
T 4aef_A          277 HVARRLGGDRAFVDLLSELKRFDIKVILDGVFHHTSFFHPYF  318 (645)
T ss_dssp             EECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHHH
T ss_pred             ccCcccCCHHHHHHHHHHhhhcCCEEEEEecccccccCCchh
Confidence            9999999999999999999999999999   99999888653

>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1

Probab=99.98  E-value=5.1e-33  Score=233.51  Aligned_cols=108  Identities=42%  Similarity=0.825  Sum_probs=103.2

Q ss_pred             CCCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHH
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMH  101 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~  101 (136)
                      .+.+.||++.+|||+++++|.++++++.|+|++++++|+||++||||+|||+||++++..++||++.||++|||+|||++
T Consensus        14 ~~~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~   93 (570)
T 1m53_A           14 SEYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTME   93 (570)
T ss_dssp             -CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHH
T ss_pred             ccCchhHhhCcEEEEechhhccCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHH
Confidence            45688999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        102 DFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       102 ~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ||++||++||++||+||+   +||++..|++
T Consensus        94 df~~lv~~aH~~Gi~VilD~V~NH~s~~~~w  124 (570)
T 1m53_A           94 DFDSLVAEMKKRNMRLMIDVVINHTSDQHPW  124 (570)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             HHHHHHHHHHHCCCEEEEEEeccccccccHH
Confidence            999999999999999999   9999998864

>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*

Probab=99.98  E-value=1e-32  Score=230.59  Aligned_cols=106  Identities=42%  Similarity=0.847  Sum_probs=102.3

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      .+.||++.+||||++++|.++++++.|+|+|++++|+||++||||+|||+||++++..++||++.||++|||+|||.+||
T Consensus         2 ~~~W~~~~viYqi~~~~F~~~~~dg~Gdl~gi~~~Ldyl~~LGv~~I~l~Pi~~~~~~~~GY~~~dy~~idp~~Gt~~df   81 (543)
T 2zic_A            2 QKHWWHKATVYQIYPKSFMDTNGDGIGDLKGITSKLDYLQKLGVMAIWLSPVYDSPMDDNGYDIANYEAIADIFGNMADM   81 (543)
T ss_dssp             CCCGGGGCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHH
T ss_pred             CccchhhCeEEEEEcHHhcCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHH
Confidence            37899999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ++||++||++||+||+   +||++.+|++
T Consensus        82 ~~lv~~~h~~Gi~VilD~V~NH~s~~~~~  110 (543)
T 2zic_A           82 DNLLTQAKMRGIKIIMDLVVNHTSDEHAW  110 (543)
T ss_dssp             HHHHHHHHTTTCEEEEEECCSBCCTTSHH
T ss_pred             HHHHHHHHHCCCEEEEEEecCcccccchh
Confidence            9999999999999999   9999998864

>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1

Probab=99.97  E-value=6.4e-33  Score=232.30  Aligned_cols=106  Identities=42%  Similarity=0.865  Sum_probs=102.3

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      .+.||++.+|||+++++|.++++++.|+|+|++++|+||++||||+|||+||++++..++||++.||++|||+|||.+||
T Consensus         2 ~~~w~~~~viYqi~~~~F~d~~~dg~Gdl~gi~~~ldyl~~LGv~~I~l~Pi~~~~~~~~GYd~~dy~~id~~~Gt~~df   81 (558)
T 1uok_A            2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDW   81 (558)
T ss_dssp             CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHH
T ss_pred             CchhhhcCeEEEEecHHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCcccccccCcccCCHHHH
Confidence            37899999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ++||++||++||+||+   +||++..|++
T Consensus        82 ~~lv~~~h~~Gi~VilD~V~NH~s~~~~w  110 (558)
T 1uok_A           82 DELLHEMHERNMKLMMDLVVNHTSDEHNW  110 (558)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             HHHHHHHHHCCCEEEEEEecccccccchH
Confidence            9999999999999999   9999998864

>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}

Probab=99.97  E-value=2.8e-32  Score=228.26  Aligned_cols=106  Identities=46%  Similarity=0.903  Sum_probs=102.0

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      .+.||++.+|||+++++|.++++++.|+|+|++++|+||++||||+|||+||++++..++||++.||++|||+|||.+||
T Consensus         2 ~~~w~~~~viYqi~~~~F~d~~~dg~Gd~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~~gY~~~dy~~id~~~Gt~~d~   81 (555)
T 2ze0_A            2 KKTWWKEGVAYQIYPRSFMDANGDGIGDLRGIIEKLDYLVELGVDIVWICPIYRSPNADNGYDISDYYAIMDEFGTMDDF   81 (555)
T ss_dssp             CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTCSCSEEEEECGGGCCHHHH
T ss_pred             ChhhhhcCcEEEEEchHhcCCCCCCcCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCcCcccccccCcccCCHHHH
Confidence            36899999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ++||++||++||+||+   +||++.+|++
T Consensus        82 ~~lv~~~h~~Gi~vilD~V~NH~~~~~~~  110 (555)
T 2ze0_A           82 DELLAQAHRRGLKVILDLVINHTSDEHPW  110 (555)
T ss_dssp             HHHHHHHHHTTCEEEEEEECSBCCTTSHH
T ss_pred             HHHHHHHHHCCCEEEEEEecccccchhhH
Confidence            9999999999999999   9999988764

>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A

Probab=99.97  E-value=6.8e-32  Score=222.38  Aligned_cols=106  Identities=30%  Similarity=0.638  Sum_probs=97.4

Q ss_pred             CCccccCCceEEEEecccc-cCcCC----CC-----------------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC
Q psy12953         23 PQKEWWQTAIMYQIYPRSF-RDVNG----DG-----------------TGDMRGITEKLDHFVDLGIESLWIQPFYPAGG   80 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f-~~~~~----~~-----------------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~   80 (136)
                      +.+.||++.+||||+|++| .+++.    ++                 +|+|+|++++|+||++||||+|||+||++++.
T Consensus         4 ~~~~W~~~~viYqi~~~~F~~~gd~~~d~~~~~~~~~w~~~~~~~~~~~Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~   83 (488)
T 2wc7_A            4 QTPDWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTPIFQSAS   83 (488)
T ss_dssp             CCCHHHHTCCEEEECGGGTCCCSSCCCCSCTTCCGGGGGGCHHHHC-CCCCHHHHHHTHHHHHHHTCCEEEESCCEEECT
T ss_pred             CCCCccccceEEEEccccccCCCCccCCcccccccccccCCCccCccCCcCHHHHHHhhHHHHHcCCCEEEECCCCCCCC
Confidence            4678999999999999999 55542    12                 79999999999999999999999999999886


Q ss_pred             CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        81 ~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                       ++||++.||++|||+|||.+||++||++||++||+||+   +||++.+|++
T Consensus        84 -~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~  134 (488)
T 2wc7_A           84 -NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFF  134 (488)
T ss_dssp             -TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCCSSSHH
T ss_pred             -CCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCCCcCHH
Confidence             69999999999999999999999999999999999999   9999998864

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.97  E-value=2.4e-31  Score=227.91  Aligned_cols=108  Identities=28%  Similarity=0.552  Sum_probs=100.0

Q ss_pred             CCCCccccCCceEEEEecccccCcCC---------------C--CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCC
Q psy12953         21 ELPQKEWWQTAIMYQIYPRSFRDVNG---------------D--GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL   83 (136)
Q Consensus        21 ~~~~~~w~~~~~iY~v~~~~f~~~~~---------------~--~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~   83 (136)
                      ..+.++||++.+||||+|++|.++++               +  .+|||+|++++|+||++||||+|||+||+++++ ++
T Consensus       216 ~~~~p~W~~~~viYqI~p~rF~~~~~~n~~~~~~~w~~~~~~~~~gGdl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~-~~  294 (696)
T 4aee_A          216 GVDKPRWYMGTVYYQIFIDSFDNGDPNNDPPNRIKKTVPREYGYYGGDLAGIMKHIDHLEDLGVETIYLTPIFSSTS-YH  294 (696)
T ss_dssp             BCSSCCTTSSCCEEEECGGGTCCCCGGGCCSSCCCCCSSCCSSCCCCCHHHHHTTHHHHHHHTCCEEEECCCEEESS-SS
T ss_pred             CCCCcchhhcCeEEEEehHHhcCCCCCCCccccccccCCcccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccCCC-CC
Confidence            35678999999999999999998762               1  489999999999999999999999999999987 49


Q ss_pred             CCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        84 gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ||++.||++|||+|||.+||++||++||++||+||+   +||++.+|+.
T Consensus       295 GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~~  343 (696)
T 4aee_A          295 RYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITMHHTNPCNEL  343 (696)
T ss_dssp             CCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECSSEECTTSHH
T ss_pred             CcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEeccccccCccCHH
Confidence            999999999999999999999999999999999999   9999988863

>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A

Probab=99.97  E-value=4.1e-31  Score=215.37  Aligned_cols=105  Identities=25%  Similarity=0.492  Sum_probs=97.4

Q ss_pred             CCCCCccccCCceEEEEe-cccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC
Q psy12953         20 VELPQKEWWQTAIMYQIY-PRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG   98 (136)
Q Consensus        20 ~~~~~~~w~~~~~iY~v~-~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G   98 (136)
                      ++.|++.||++.+|||++ +++|.   +++.|+|+|++++|+||++||||+|||+||++++.  .||++.||++|||+||
T Consensus         5 ~~~~~~~ww~~~viYqi~~~~sf~---gdg~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~--~~y~~~dy~~idp~~G   79 (424)
T 2dh2_A            5 SELPAQKWWHTGALYRIGDLQAFQ---GHGAGNLAGLKGRLDYLSSLKVKGLVLGPIHKNQK--DDVAQTDLLQIDPNFG   79 (424)
T ss_dssp             CSCCCCCGGGSSCEEEECCHHHHH---CTTCCSHHHHHTTHHHHHHTTCSEEEECCCEEECT--TCSTTEEEEEECGGGC
T ss_pred             CCCCcccccccCeEEEEcCccccC---CCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCC--CCCCcccccccCccCC
Confidence            456778999999999998 99997   56789999999999999999999999999999985  4699999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      |++||++||++||++||+||+   +||++ .|+++
T Consensus        80 t~~d~~~lv~~ah~~Gi~vilD~V~NH~s-~~~wF  113 (424)
T 2dh2_A           80 SKEDFDSLLQSAKKKSIRVILDLTPNYRG-ENSWF  113 (424)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECCTTTTS-SSTTC
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEECCCcCC-Ccccc
Confidence            999999999999999999999   99999 67664

>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A

Probab=99.97  E-value=3e-31  Score=217.94  Aligned_cols=105  Identities=24%  Similarity=0.408  Sum_probs=96.5

Q ss_pred             CccccCCceEEEEecccccCcCCCCC------------CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-------CCCC
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQPFYPAGG-------ADLG   84 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~------------g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-------~~~g   84 (136)
                      ++.||++.+||||++++|.++++++.            |+|++++++|+||++||||+|||+||++++.       .++|
T Consensus         2 ~~~~w~~~~iYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~G   81 (478)
T 2guy_A            2 TPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHG   81 (478)
T ss_dssp             CHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTS
T ss_pred             CchhhccCcEEEEecccccCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCC
Confidence            46788999999999999998876653            9999999999999999999999999999752       4589


Q ss_pred             CCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        85 Y~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |++.||++|||+|||.+||++||++||++||+||+   +||++.+++
T Consensus        82 Y~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  128 (478)
T 2guy_A           82 YWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGA  128 (478)
T ss_dssp             CSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBC
T ss_pred             CCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECcccCCCCCC
Confidence            99999999999999999999999999999999999   999998654

>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=4.9e-31  Score=216.32  Aligned_cols=103  Identities=30%  Similarity=0.669  Sum_probs=95.5

Q ss_pred             cccCCceEEEEecccc-cCcCCC----C----------------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCC
Q psy12953         26 EWWQTAIMYQIYPRSF-RDVNGD----G----------------TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLG   84 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f-~~~~~~----~----------------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~g   84 (136)
                      .||++.+||||+|++| ++++..    +                +|+|++++++|+||++||||+|||+||++++. ++|
T Consensus         2 ~W~~~~viYqi~~~~F~~~gd~~~~~~g~~~~~~~~~~~~~~~~~G~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~-~~g   80 (475)
T 2z1k_A            2 AWYEGAFFYQIFPDRFFRAGPPGRPAPAGPFEPWEAPPTLRGFKGGTLWGVAEKLPYLLDLGVEAIYLNPVFASTA-NHR   80 (475)
T ss_dssp             CTTSSCCEEEECGGGSCCCSCCCSSCCCSCCCCTTSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEEESS-TTC
T ss_pred             CcccCceEEEEccCeecCCCCcccCCCccccccccCCCCccccCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCC-CCC
Confidence            6999999999999999 666521    3                79999999999999999999999999999876 699


Q ss_pred             CCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        85 Y~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      |++.||+++||+|||.+||++||++||++||+||+   +||++.+|++
T Consensus        81 Y~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~NH~~~~~~~  128 (475)
T 2z1k_A           81 YHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFNHTGRGFFA  128 (475)
T ss_dssp             CSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             cCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccccCCCHH
Confidence            99999999999999999999999999999999999   9999988764

>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1

Probab=99.97  E-value=4.6e-31  Score=217.24  Aligned_cols=105  Identities=24%  Similarity=0.400  Sum_probs=96.8

Q ss_pred             CccccCCceEEEEecccccCcCCCCC------------CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-------CCCC
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQPFYPAGG-------ADLG   84 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~------------g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-------~~~g   84 (136)
                      ++.||++.+|||+++++|.++++++.            |+|++++++|+||++||||+|||+||++++.       .+||
T Consensus         2 ~~~~w~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~gG~~~gi~~~LdyL~~LGv~~I~l~Pi~~~~~~~~~~~~~~~G   81 (484)
T 2aaa_A            2 SAASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHG   81 (484)
T ss_dssp             CHHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTS
T ss_pred             ChhhhccCcEEEEeCccccCCCCCCCCCCCccccccCCCCHHHHHHHHHHHHhcCCCEEEeCccccCcccccccCCCCCC
Confidence            46789999999999999998877654            9999999999999999999999999999753       4599


Q ss_pred             CCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        85 Y~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |++.||++|||+|||.+||++||++||++||+||+   +||++.+++
T Consensus        82 Y~~~dy~~id~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  128 (484)
T 2aaa_A           82 YWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGN  128 (484)
T ss_dssp             CSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSC
T ss_pred             cCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECcCCcCCCCC
Confidence            99999999999999999999999999999999999   999998654

>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*

Probab=99.96  E-value=1.2e-30  Score=212.57  Aligned_cols=98  Identities=33%  Similarity=0.575  Sum_probs=94.0

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q psy12953         31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA  110 (136)
Q Consensus        31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~a  110 (136)
                      .+|||+++++|.++++++.|+|++++++|+||++||||+|||+||++++. ++||++.||++|||+|||.+||++||++|
T Consensus         1 ~viYei~~~~F~~~~~~g~Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-~~GY~~~dy~~idp~~Gt~~df~~lv~~a   79 (441)
T 1lwj_A            1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSIS-FHGYDVVDFYSFKAEYGSEREFKEMIEAF   79 (441)
T ss_dssp             CCEEEECHHHHCCSSSSSSCCHHHHHHTHHHHHHTTCCEEEECCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHH
T ss_pred             CeEEEEehHHhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEeCCCcCCCC-CCCCCcccccccCcccCCHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999985 69999999999999999999999999999


Q ss_pred             HHCCCcEEE---eccCCCccCC
Q psy12953        111 HSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       111 h~~Gi~vil---~nh~~~~~~~  129 (136)
                      |++||+||+   +||++.+|++
T Consensus        80 H~~Gi~VilD~V~NH~~~~~~~  101 (441)
T 1lwj_A           80 HDSGIKVVLDLPIHHTGFLHTW  101 (441)
T ss_dssp             HHTTCEEEEEECTTBCCTTCHH
T ss_pred             HHCCCEEEEEeCCCcccCchHH
Confidence            999999999   9999998864

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=99.96  E-value=2.2e-30  Score=218.20  Aligned_cols=105  Identities=33%  Similarity=0.705  Sum_probs=97.3

Q ss_pred             CCccccCCceEEEEecccccCcCCC-------------------CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCC
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGD-------------------GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL   83 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~-------------------~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~   83 (136)
                      +.+.||++.+|||+++++|.+++..                   .+|+|++++++|+||++||||+|||+||++++. +|
T Consensus       127 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-~~  205 (588)
T 1j0h_A          127 EAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPS-NH  205 (588)
T ss_dssp             CCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS-SS
T ss_pred             CCCccccccEEEEEcchhhcCCCCCcCcccccccCCCCCcccccCCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC-CC
Confidence            4678999999999999999876521                   268999999999999999999999999999886 69


Q ss_pred             CCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        84 gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      ||++.||+++||+|||++||++||++||++||+||+   +||++.+|+
T Consensus       206 GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  253 (588)
T 1j0h_A          206 KYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFA  253 (588)
T ss_dssp             CCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCH
T ss_pred             CcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcCcccch
Confidence            999999999999999999999999999999999999   999998775

>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1

Probab=99.96  E-value=1.3e-30  Score=214.71  Aligned_cols=100  Identities=37%  Similarity=0.779  Sum_probs=96.1

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHH--------HHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDM  100 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l--------~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~  100 (136)
                      ++.+||||++++|.++++++.|+|+|++++|+||        ++||||+|||+||++++.. +||++.||++|||+|||.
T Consensus         3 ~~~viYqi~~~~F~~~~~~g~Gdl~gi~~~LdyL~~~~~~~~~~LGv~~I~L~Pi~~~~~~-~GYd~~dy~~idp~~Gt~   81 (488)
T 1wza_A            3 KHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSY-HGYDVTDYYKINPDYGTL   81 (488)
T ss_dssp             CCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSS-SCCSCSEEEEECGGGCCH
T ss_pred             CCcEEEEEEChhhcCCCCCCcCCHHHHHHhhhhhhccccchhhhcCccEEEECCcccCCCC-CCcCcccccccCcccCCH
Confidence            6789999999999999999999999999999999        9999999999999998864 999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        101 HDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       101 ~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      +||++||++||++||+||+   +||++.+|++
T Consensus        82 ~d~~~Lv~~aH~~Gi~VilD~V~NH~s~~~~~  113 (488)
T 1wza_A           82 EDFHKLVEAAHQRGIKVIIDLPINHTSERHPW  113 (488)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCSBCCTTSHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeccccccCccHh
Confidence            9999999999999999999   9999998864

>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A

Probab=99.96  E-value=2.3e-30  Score=218.62  Aligned_cols=110  Identities=26%  Similarity=0.455  Sum_probs=100.3

Q ss_pred             CCCccccCCceEEEEecccccCcCCC-------------------CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGD-------------------GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--   80 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~-------------------~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--   80 (136)
                      .....|+++.+|||+++++|.+++++                   .+|||+|++++|+||++||||+|||+||++++.  
T Consensus        98 ~~~~~~~~~~viY~i~~drF~~gd~~nd~~~~~~~~~~~~~~~~~~gGdl~gi~~~Ldyl~~LGv~aI~l~Pi~~~~~~~  177 (601)
T 3edf_A           98 AQRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAA  177 (601)
T ss_dssp             TTCCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSCCCCTTSTTSCCCCCHHHHHHTHHHHHHTTCCEEEESCCEECCCSS
T ss_pred             cccCCCCccCeEEEEehHHhcCCCCCcCcCcCcccccCccccccccCcCHHHHHHHHHHHHHcCCCEEEECccccCCCCC
Confidence            44578999999999999999877654                   479999999999999999999999999999864  


Q ss_pred             -CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         81 -ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        81 -~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                       .++||++.||++|||+|||.+||++||++||++||+||+   +||++.+|++.+
T Consensus       178 ~~~~GY~~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~  232 (601)
T 3edf_A          178 YSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWMK  232 (601)
T ss_dssp             SGGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGGG
T ss_pred             CCCCCcCccccccccccCCCHHHHHHHHHHHHHcCCEEEEEECCcccCCcchhhh
Confidence             349999999999999999999999999999999999999   999999987543

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=99.96  E-value=4.9e-30  Score=215.95  Aligned_cols=106  Identities=31%  Similarity=0.706  Sum_probs=97.6

Q ss_pred             CCCccccCCceEEEEecccccCcCC-----------C---------CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCC
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNG-----------D---------GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA   81 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~-----------~---------~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~   81 (136)
                      .+.+.||++.+|||+++++|.+++.           .         .+|++++++++|+||++||||+|||+||++++. 
T Consensus       122 ~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~f~~G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-  200 (585)
T 1wzl_A          122 FTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPS-  200 (585)
T ss_dssp             CCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS-
T ss_pred             cCCcchhccceEEEEcchhhcCCCcccccccccccCccCCCcccccCCCCHHHHHHHhHHHHHcCCCEEEECCcccCCC-
Confidence            3668899999999999999976651           1         268999999999999999999999999999886 


Q ss_pred             CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         82 DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        82 ~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      +|||++.||+++||+|||++||++||++||++||+||+   +||++.+|+
T Consensus       201 ~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~~  250 (585)
T 1wzl_A          201 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFF  250 (585)
T ss_dssp             SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSH
T ss_pred             CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCccH
Confidence            69999999999999999999999999999999999999   999998876

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=99.96  E-value=4.3e-30  Score=219.74  Aligned_cols=105  Identities=24%  Similarity=0.430  Sum_probs=96.2

Q ss_pred             CccccCCceEEEEecccccCcCCC------------C---------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCC---
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGD------------G---------TGDMRGITEKLDHFVDLGIESLWIQPFYPAG---   79 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~------------~---------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~---   79 (136)
                      ++.||++.+||||+|++|.+++++            +         +|+|++++++|+||++||||+|||+||+++.   
T Consensus         2 ~~~~~~~~viYqI~p~~F~d~d~~n~~~~~~~~~~d~~~~~~~~~~gGdl~gi~~kLdyLk~LGv~aIwL~Pi~~~~~~~   81 (686)
T 1qho_A            2 SSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDTL   81 (686)
T ss_dssp             TTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSSC
T ss_pred             CcccCccCcEEEEeccccCCCCcccCcccccccccCCCccccccccCCCHHHHHHhhHHHHhcCCCEEEECccccCCccc
Confidence            578999999999999999987753            1         4999999999999999999999999999862   


Q ss_pred             -----CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         80 -----GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        80 -----~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                           ..++||++.||++|||+|||++||++||++||++||+||+   +||++..|.
T Consensus        82 ~~~g~~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~NHts~~~~  138 (686)
T 1qho_A           82 AGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKA  138 (686)
T ss_dssp             SSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBT
T ss_pred             ccCCCCCcCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence                 2468999999999999999999999999999999999999   999998773

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=99.96  E-value=1.1e-29  Score=213.75  Aligned_cols=106  Identities=30%  Similarity=0.690  Sum_probs=97.5

Q ss_pred             CCCccccCCceEEEEecccccCcCCC-------------------CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGD-------------------GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD   82 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~-------------------~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~   82 (136)
                      .+.+.||++.+|||+++++|.+++..                   .+|++++++++|+||++||||+|||+||++++. +
T Consensus       122 ~~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~w~~~~~~~~~~~~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-~  200 (583)
T 1ea9_C          122 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATT-N  200 (583)
T ss_dssp             CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSS-S
T ss_pred             CCCCcccccceEEEEchHHhcCCCCccCccccccccCCCCcccccCCcCHHHHHHhhHHHHHcCCCEEEECCCccCCC-C
Confidence            46678999999999999999766521                   258999999999999999999999999999886 6


Q ss_pred             CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        83 ~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |||++.||+++||+|||++||++||++||++||+||+   +||++.+|+
T Consensus       201 ~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  249 (583)
T 1ea9_C          201 HKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFP  249 (583)
T ss_dssp             STTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTH
T ss_pred             CCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccccCCCccH
Confidence            9999999999999999999999999999999999999   999998876

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=99.96  E-value=2.3e-29  Score=213.65  Aligned_cols=108  Identities=31%  Similarity=0.594  Sum_probs=99.3

Q ss_pred             CCccccCCceEEEEecccccCcCCC-------------------------------C-----CCCHHHHHHhHHHHHH-c
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGD-------------------------------G-----TGDMRGITEKLDHFVD-L   65 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~-------------------------------~-----~g~~~~l~~~l~~l~~-l   65 (136)
                      ..+.||++.+|||+++++|.+++++                               +     +|+|++++++|+||++ |
T Consensus       125 ~~~~W~~~~viYqi~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~f~gG~~~gi~~~LdyLk~~L  204 (637)
T 1ji1_A          125 KTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIKKTL  204 (637)
T ss_dssp             CCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTHHHHHTTT
T ss_pred             CCCchhhCCcEEEEecccccCCCCcccccccccccccccccccccccCcccccccCCcccccCcCHHHHHHhHHHHHhcc
Confidence            4578999999999999999876543                               1     3899999999999999 9


Q ss_pred             CCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCC--C--cEEE---eccCCCccCCCC
Q psy12953         66 GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG--K--PKRT---FREVTKSFANNQ  131 (136)
Q Consensus        66 G~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~G--i--~vil---~nh~~~~~~~~~  131 (136)
                      |||+|||+||++++. +|||++.||+++||+|||++||++||++||++|  |  +|||   +||++.+|+.++
T Consensus       205 Gvt~I~L~Pi~~~~~-~~GYd~~dy~~id~~~Gt~~dfk~LV~~~H~~G~~I~~~VIlD~V~NH~~~~~~~f~  276 (637)
T 1ji1_A          205 GANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFD  276 (637)
T ss_dssp             CCCEEEESCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTC
T ss_pred             CCCEEEECCCccCCC-CCCcCccchhhhccccCCHHHHHHHHHHHHhCCCCccceEEEEECcccCCCCcHHHh
Confidence            999999999999986 699999999999999999999999999999999  9  9999   999999987654

>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}

Probab=99.96  E-value=2.2e-29  Score=205.43  Aligned_cols=100  Identities=24%  Similarity=0.609  Sum_probs=92.0

Q ss_pred             CCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCC------CCCCCccCCCCCCCC
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA------DLGYDVSNYVDVDPL   96 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~------~~gY~~~d~~~vd~~   96 (136)
                      .++.||++.+|||+++++|+++     |+|++++++|+||++||||+|||+||++++..      ++||++.||+++||+
T Consensus         5 ~~~~w~~~~viYei~~~~f~~~-----G~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~   79 (449)
T 3dhu_A            5 DTQTQLRNEMIYSVFVRNYSEA-----GNFAGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPE   79 (449)
T ss_dssp             --CGGGGGCCEEEECHHHHSSS-----CSHHHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGG
T ss_pred             CCchhhhcCEEEEEEhhhhCCC-----CCHHHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcc
Confidence            4689999999999999999864     99999999999999999999999999988653      368999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCcEEE---eccCCCcc
Q psy12953         97 FGDMHDFEILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus        97 ~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      |||.+||++||++||++||+||+   +||++.++
T Consensus        80 ~Gt~~~~~~lv~~~h~~Gi~vi~D~V~NH~~~~~  113 (449)
T 3dhu_A           80 YGTLADFKALTDRAHELGMKVMLDIVYNHTSPDS  113 (449)
T ss_dssp             GCCHHHHHHHHHHHHHTTCEEEEEECCSEECTTS
T ss_pred             cCCHHHHHHHHHHHHHCCCEEEEEEccCcCcCcc
Confidence            99999999999999999999999   99998754

>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich, membrane protein; 2.20A {Bacteroides thetaiotaomicron} PDB: 3k8m_A* 3k8l_A*

Probab=99.95  E-value=1.7e-28  Score=209.84  Aligned_cols=107  Identities=36%  Similarity=0.695  Sum_probs=100.0

Q ss_pred             CCccccCC----ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC
Q psy12953         23 PQKEWWQT----AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG   98 (136)
Q Consensus        23 ~~~~w~~~----~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G   98 (136)
                      +++..|++    .+|||+++++|.++++++.|+|++++++|+||++|||++|||+||++++.. +||++.||++|||+||
T Consensus        26 ~~~~~w~~~~~~~viY~i~~~~f~~~~~~~~G~~~g~~~~l~yl~~lGv~~i~l~Pi~~~~~~-~gY~~~dy~~i~~~~G  104 (669)
T 3k8k_A           26 ASPDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCMSY-HGYDVTDYTKVNPQLG  104 (669)
T ss_dssp             CCCCCCCSCCCSCCEEEECTTTSCCSSSSSSCCHHHHHTTHHHHHTTTCSEEEECCCSSBSST-TCCSBSCTTSCCTTTC
T ss_pred             CCChhhcccCcCcEEEEEEhHHhcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEecccccCCCC-CCCCcccccccccccC
Confidence            44556666    899999999999999999999999999999999999999999999999875 9999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      |.++|++||++||++||+||+   +||++.+|+++
T Consensus       105 t~~d~~~lv~~~h~~gi~vi~D~V~NH~~~~~~wf  139 (669)
T 3k8k_A          105 TESDFDRLVTEAHNRGIKIYLDYVMNHTGTAHPWF  139 (669)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEECcccCCCcCHHH
Confidence            999999999999999999999   99999887653

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=99.95  E-value=9.5e-29  Score=211.35  Aligned_cols=105  Identities=25%  Similarity=0.426  Sum_probs=94.7

Q ss_pred             CccccCCceEEEEecccccCcCCC---------C---------CCCHHHHHHhHH--HHHHcCCcEEEEcCCccCC----
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGD---------G---------TGDMRGITEKLD--HFVDLGIESLWIQPFYPAG----   79 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~---------~---------~g~~~~l~~~l~--~l~~lG~~~I~l~Pi~~~~----   79 (136)
                      ....|++.+||||++++|.+++++         +         +|+|++++++|+  ||++||||+|||+||+++.    
T Consensus         8 ~~~~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvtaIwL~Pi~~~~~~~~   87 (683)
T 3bmv_A            8 NVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVENIYAVL   87 (683)
T ss_dssp             CTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEECCCCE
T ss_pred             ccCCCccCcEEEEecccccCCCCCCCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHHcCCCEEEeCccccCccccc
Confidence            345679999999999999987663         2         499999999999  9999999999999999852    


Q ss_pred             --------CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         80 --------GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        80 --------~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                              ..+|||++.||++|||+|||.+||++||++||++||+||+   +||++..|.
T Consensus        88 ~~~g~~g~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GikVilD~V~NHts~~~~  147 (683)
T 3bmv_A           88 PDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASE  147 (683)
T ss_dssp             EETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCS
T ss_pred             ccccccCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcccccccccc
Confidence                    2469999999999999999999999999999999999999   999988773

>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A {Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A* 2wpg_A

Probab=99.95  E-value=1.1e-28  Score=209.98  Aligned_cols=100  Identities=25%  Similarity=0.510  Sum_probs=94.7

Q ss_pred             CccccCC--ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCCCCCCCCC
Q psy12953         24 QKEWWQT--AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVDVDPLFGD   99 (136)
Q Consensus        24 ~~~w~~~--~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~Gt   99 (136)
                      .+.||++  .+|||+++++|.       |+|++++++|+||++||||+|||+||++++.  .++||++.||++|||+|||
T Consensus        82 ~~~W~~~~~~viY~i~~~~F~-------Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~~~dy~~vdp~~Gt  154 (644)
T 3czg_A           82 HAGWFGQPHMLGYSAYADRFA-------GTLQGVAERVPYLQELGVRYLHLLPFLRARAGDNDGGFAVSDYGQVEPSLGS  154 (644)
T ss_dssp             CTTGGGSTTCCEEEECHHHHH-------SSHHHHHHTHHHHHHHTCCEEEECCCBCBCSSCCTTTTSBSCTTSBCGGGCC
T ss_pred             CCccccCCCcEEEEEechhhC-------CCHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCCcCcccccccCcccCC
Confidence            5789998  899999999998       9999999999999999999999999999975  6899999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953        100 MHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       100 ~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      ++||++||++||++||+||+   +||++.+|+++
T Consensus       155 ~~df~~Lv~~aH~~GI~VilD~V~NH~s~~~~wf  188 (644)
T 3czg_A          155 NDDLVALTSRLREAGISLCADFVLNHTADDHAWA  188 (644)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEecCCcccchhhH
Confidence            99999999999999999999   99999888643

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=99.95  E-value=1.4e-28  Score=210.41  Aligned_cols=105  Identities=27%  Similarity=0.503  Sum_probs=94.3

Q ss_pred             CccccCCceEEEEecccccCcCCC---------C---------CCCHHHHHHhHH--HHHHcCCcEEEEcCCccCC----
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGD---------G---------TGDMRGITEKLD--HFVDLGIESLWIQPFYPAG----   79 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~---------~---------~g~~~~l~~~l~--~l~~lG~~~I~l~Pi~~~~----   79 (136)
                      ....|++.+||||++++|.+++++         +         +|+|++++++|+  ||++||||+|||+||+++.    
T Consensus         8 ~~~~~~~~viYqi~~~~F~d~~~~n~~~~~~~dg~~~~~~~~~gGdl~gi~~kLd~~yLk~LGvt~IwL~Pi~~~~~~~~   87 (686)
T 1d3c_A            8 NKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSII   87 (686)
T ss_dssp             CTTCCTTCCEEEECGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHHHTTTTGGGTCCEEEECCCEEECCCCE
T ss_pred             ccCCCccCcEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHHhcCHHHHHhcCCCEEEeCCcccCCcccc
Confidence            344579999999999999987763         2         499999999999  9999999999999999852    


Q ss_pred             -------CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         80 -------GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        80 -------~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                             ..++||++.||++|||+|||++||++||++||++||+||+   +||++..|.
T Consensus        88 ~~~g~~~~~~~GYd~~dy~~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHts~~~~  146 (686)
T 1d3c_A           88 NYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASS  146 (686)
T ss_dssp             ESSSCEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCS
T ss_pred             cccCccCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCcCccccccc
Confidence                   2459999999999999999999999999999999999999   999988773

>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase, (beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A* 1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A* 1s46_A* 1zs2_A*

Probab=99.95  E-value=2.3e-28  Score=207.64  Aligned_cols=100  Identities=27%  Similarity=0.546  Sum_probs=94.4

Q ss_pred             CCccccCC--ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCCCCCCCC
Q psy12953         23 PQKEWWQT--AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVDVDPLFG   98 (136)
Q Consensus        23 ~~~~w~~~--~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~G   98 (136)
                      ..+.||++  .+|||+++++|.       |+|++++++|+||++||||+|||+||++++.  .++||++.||++|||+||
T Consensus        88 ~~~~W~~~~~~viY~~~~~~f~-------Gdl~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~~~~GY~v~dy~~vdp~~G  160 (628)
T 1g5a_A           88 NNPDWILSNKQVGGVCYVDLFA-------GDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALG  160 (628)
T ss_dssp             TCGGGGGCTTCCEEEECHHHHH-------SSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTC
T ss_pred             cCcccccCCCcEEEEEchhhhC-------CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCCcCCcccCCcCccCC
Confidence            35789988  799999999997       9999999999999999999999999999875  579999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      |.+||++||++||++||+||+   +||++.+|++
T Consensus       161 t~~d~~~Lv~~ah~~GI~VilD~V~NH~s~~~~w  194 (628)
T 1g5a_A          161 TIGDLREVIAALHEAGISAVVDFIFNHTSNEHEW  194 (628)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHH
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEecCcccccchh
Confidence            999999999999999999999   9999998864

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=99.95  E-value=1.4e-28  Score=210.26  Aligned_cols=102  Identities=25%  Similarity=0.502  Sum_probs=92.9

Q ss_pred             ccCCceEEEEecccccCcCCC---------C---------CCCHHHHHHhHH--HHHHcCCcEEEEcCCccCC-------
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGD---------G---------TGDMRGITEKLD--HFVDLGIESLWIQPFYPAG-------   79 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~---------~---------~g~~~~l~~~l~--~l~~lG~~~I~l~Pi~~~~-------   79 (136)
                      -|++.+||||+|++|.+++++         +         +|+|++++++|+  ||++||||+|||+||+++.       
T Consensus         8 ~~~~~viYqI~p~rF~d~~~~n~~~~~~~~~~~~~~~~~~gGdl~gi~~kLd~~yLk~LGv~aIwL~Pi~~~~~~~~~~~   87 (680)
T 1cyg_A            8 NFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKINDGYLTDMGVTAIWISQPVENVFSVMNDA   87 (680)
T ss_dssp             CCTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHHHTSTTTTTTCCEEEECCCEEECCCCCSSS
T ss_pred             CCccceEEEEecccccCCCCCcCCCCcccCCCccccccccCcCHHHHHhhcCHHHHHhCCCCEEEeCccccCcccccccc
Confidence            369999999999999988763         1         499999999999  9999999999999999862       


Q ss_pred             ---CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         80 ---GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        80 ---~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                         ..++||++.||++|||+|||++||++||++||++||+||+   +||++..|.
T Consensus        88 ~g~~~~~GY~~~Dy~~idp~~Gt~~df~~Lv~~aH~~GIkVilD~V~NHts~~~~  142 (680)
T 1cyg_A           88 SGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASE  142 (680)
T ss_dssp             SCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCS
T ss_pred             CCCCCCCCcCchhccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccc
Confidence               2459999999999999999999999999999999999999   999988763

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=99.94  E-value=4.6e-28  Score=206.62  Aligned_cols=107  Identities=16%  Similarity=0.333  Sum_probs=97.6

Q ss_pred             CCccccCCceEEEEecccccCcCCC----CCCCHHHHHHh--HHHHHHcCCcEEEEcCCccCCCC----------CCCCC
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGD----GTGDMRGITEK--LDHFVDLGIESLWIQPFYPAGGA----------DLGYD   86 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~----~~g~~~~l~~~--l~~l~~lG~~~I~l~Pi~~~~~~----------~~gY~   86 (136)
                      ++..||++.+|||+|+++|++++++    +.|+|++++++  |+||++||||+|||+||++++..          +|||+
T Consensus       143 ~~~~~~~~~vIYei~v~~F~~~~~~~~~~~~G~~~gi~~~~~l~yL~~LGvt~i~L~Pi~~~~~~~~~~~~g~~~~wGY~  222 (657)
T 2wsk_A          143 PPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYN  222 (657)
T ss_dssp             CCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHTSHHHHHHHHHHTCCEEEESCCEEECCCHHHHTTTCCCSSCCC
T ss_pred             CCCCCchhcEEEEEEcceeeccCCCCCccCCcCHHHHhcccchHHHHHcCCCEEEECCccccCccccccccccccccCcC
Confidence            3457899999999999999986654    47999999999  99999999999999999998763          58999


Q ss_pred             ccCCCCCCCCCC-----CHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         87 VSNYVDVDPLFG-----DMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        87 ~~d~~~vd~~~G-----t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      +.||+++||+||     +.+||++||++||++||+||+   +||++.+++.
T Consensus       223 ~~~y~~~~~~~G~~p~~~~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~  273 (657)
T 2wsk_A          223 PVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLD  273 (657)
T ss_dssp             EEEEEEECGGGCSSGGGHHHHHHHHHHHHHHTTCEEEEEECCSCCTTCSTT
T ss_pred             cccCCCCCHHHcCCCCcCHHHHHHHHHHHHHCCCEEEEEEeeccccccccc
Confidence            999999999999     479999999999999999999   9999988865

>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB: 3bcd_A* 3bcf_A

Probab=99.94  E-value=1.1e-27  Score=202.58  Aligned_cols=106  Identities=13%  Similarity=0.205  Sum_probs=95.4

Q ss_pred             CCCCCccccCCceEEEEeccc-----ccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCC
Q psy12953         20 VELPQKEWWQTAIMYQIYPRS-----FRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVD   92 (136)
Q Consensus        20 ~~~~~~~w~~~~~iY~v~~~~-----f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~   92 (136)
                      ..++.|.||++.+|||+++++     |.++....+|+|++++++|+||++||||+|||+||+++.+  .++||++.||++
T Consensus       112 ~~~~~p~w~~~~viyq~F~w~~~~~~f~~~~~~~gG~~~gi~~~LdyLk~LGvtaIwL~Pi~~~~s~~~~~GYd~~dy~~  191 (599)
T 3bc9_A          112 NYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWNLLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWD  191 (599)
T ss_dssp             SCCCCCGGGCCCCEEECCCTTTTSHHHHHHCGGGGGHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSCSEEETTC
T ss_pred             ccCCCchhhcCceEEEEeeccccccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCChhhccc
Confidence            345668999999999988777     8876555569999999999999999999999999999665  479999999996


Q ss_pred             ---------CCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         93 ---------VDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        93 ---------vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                               |||+|||.+||++||++||++||+||+   +||++.
T Consensus       192 l~e~~q~g~idp~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NH~~~  236 (599)
T 3bc9_A          192 LGEFDQKGTVRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMG  236 (599)
T ss_dssp             SSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEECS
T ss_pred             ccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCCC
Confidence                     999999999999999999999999999   999963

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=99.94  E-value=4.7e-27  Score=202.19  Aligned_cols=107  Identities=17%  Similarity=0.335  Sum_probs=96.8

Q ss_pred             CCccccCCceEEEEecccccCcCC----CCCCCHHHHHHh--HHHHHHcCCcEEEEcCCccCCCC----------CCCCC
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEK--LDHFVDLGIESLWIQPFYPAGGA----------DLGYD   86 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~--l~~l~~lG~~~I~l~Pi~~~~~~----------~~gY~   86 (136)
                      ++..||++.+|||+|+++|+++++    ...|+|++++++  |+||++||||+|||+||++.+..          +|||+
T Consensus       166 ~~~~~~~~~vIYeihv~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~~wGY~  245 (718)
T 2vr5_A          166 GKKVPLKDTVIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYD  245 (718)
T ss_dssp             SSCCCTTSCCEEEECTTTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCEEEECCCBCBCCCHHHHTTTCCCSSCCC
T ss_pred             CCCCChhHCEEEEEEcchhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCeEEEeCCEecCccccccccCCcCccCcC
Confidence            345689999999999999987543    357999999999  99999999999999999998753          48999


Q ss_pred             ccCCCCCCCCCCC-------HHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         87 VSNYVDVDPLFGD-------MHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        87 ~~d~~~vd~~~Gt-------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      +.||+++||+|||       .+||++||++||++||+||+   +||++.+++.
T Consensus       246 ~~~y~~~~~~yGt~~~~~~~~~dfk~lv~~~H~~Gi~VilDvV~NH~~~~~~~  298 (718)
T 2vr5_A          246 PINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNHTAEGNHL  298 (718)
T ss_dssp             BSCSSSBCGGGCSSCTTTHHHHHHHHHHHHHHTTTCEEEEEECCSCCSSCSTT
T ss_pred             cccCcccChhhcCCCCCCchHHHHHHHHHHHHHCCCEEEEEeccCcccCcccc
Confidence            9999999999999       79999999999999999999   9999987764

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=99.94  E-value=2.6e-27  Score=200.35  Aligned_cols=96  Identities=22%  Similarity=0.383  Sum_probs=90.0

Q ss_pred             cCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      |++.+|||+|+++|..     .|+|++++++|+||++||||+|||+||++++. .+|||++.||+++||+|||++||++|
T Consensus       124 ~~~~viYei~~~~f~~-----~G~~~gi~~~L~yl~~lGv~~I~L~Pi~~~~~~~~wGY~~~~y~~~~~~~Gt~~d~~~l  198 (602)
T 2bhu_A          124 LADCVFYEVHVGTFTP-----EGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDLMAL  198 (602)
T ss_dssp             GGGCCEEEECHHHHSS-----SCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHHHHH
T ss_pred             cccceEEEEeeccccc-----CCCHHHHHHHHHHHHHcCCCEEEECChhhccCCCCCCcccccCcccCcCCCCHHHHHHH
Confidence            8999999999999973     49999999999999999999999999999876 56799999999999999999999999


Q ss_pred             HHHHHHCCCcEEE---eccCCCccC
Q psy12953        107 IEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus       107 v~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |++||++||+||+   +||++.+++
T Consensus       199 v~~~H~~Gi~VilD~V~NH~~~~~~  223 (602)
T 2bhu_A          199 VDAAHRLGLGVFLDVVYNHFGPSGN  223 (602)
T ss_dssp             HHHHHHTTCEEEEEECCSCCCSSSC
T ss_pred             HHHHHHCCCEEEEEecccccccCCc
Confidence            9999999999999   999986654

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=99.94  E-value=9.4e-27  Score=197.25  Aligned_cols=98  Identities=18%  Similarity=0.238  Sum_probs=90.9

Q ss_pred             CCceEEEEecccccCcCCCC-CCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDG-TGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~-~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      ++.+|||+|+++|+++++++ .|+|++++++| +||++||||+|||+||++++. .+|||++.||+++||+|||++||++
T Consensus       130 ~~~~iYei~~~~f~~~~~~g~~g~~~~i~~~ll~yl~~lGv~~i~l~Pi~~~~~~~~~GY~~~~y~~~~~~~Gt~~~~~~  209 (617)
T 1m7x_A          130 APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRY  209 (617)
T ss_dssp             SCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHH
T ss_pred             CCcEEEEEEHHHhcCCCCCCCccCHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcccccCCccCccCCCHHHHHH
Confidence            67899999999999876655 78999999997 999999999999999999987 4699999999999999999999999


Q ss_pred             HHHHHHHCCCcEEE---eccCCCc
Q psy12953        106 LIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus       106 lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      ||++||++||+||+   +||++.+
T Consensus       210 lv~~~H~~Gi~VilD~V~NH~~~~  233 (617)
T 1m7x_A          210 FIDAAHAAGLNVILDWVPGHFPTD  233 (617)
T ss_dssp             HHHHHHHTTCEEEEEECTTSCCCS
T ss_pred             HHHHHHHCCCEEEEEEecCcccCc
Confidence            99999999999999   9999653

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=99.94  E-value=1.3e-26  Score=200.21  Aligned_cols=107  Identities=16%  Similarity=0.283  Sum_probs=96.8

Q ss_pred             CccccCCceEEEEecccccCcCC----CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-------------CCCCCC
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNG----DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-------------ADLGYD   86 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-------------~~~gY~   86 (136)
                      +..||++.+|||+|+++|+++++    ...|+|++++++|+||++||||+|||+||++.+.             .+|||+
T Consensus       172 ~~~~~~~~vIYe~hv~~f~~~~~~~~~~~~Gt~~gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~  251 (750)
T 1bf2_A          172 PTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYM  251 (750)
T ss_dssp             CCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCC
T ss_pred             CCCCccccEEEEEEhhHhhCcCCCCCccCCcCHHHHHHHHHHHHHcCCCEEEECCcccCccccccccccccccccccCcC
Confidence            34678999999999999987554    2479999999999999999999999999999864             348999


Q ss_pred             ccCCCCCCCCCCC-------HHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         87 VSNYVDVDPLFGD-------MHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        87 ~~d~~~vd~~~Gt-------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      +.||+++||+|||       .+||++||++||++||+||+   +||++.+++..
T Consensus       252 ~~dy~~~~~~yGt~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~  305 (750)
T 1bf2_A          252 TENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWT  305 (750)
T ss_dssp             BSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSS
T ss_pred             cccccccCccccCCCCCccHHHHHHHHHHHHHHCCCEEEEEEecccccCccccc
Confidence            9999999999999       99999999999999999999   99999887754

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=99.94  E-value=3e-27  Score=203.28  Aligned_cols=104  Identities=20%  Similarity=0.313  Sum_probs=92.8

Q ss_pred             CccccCCceEEEEecccccCcCCCCC---CCHHHHHH-----------hHHHHHHcCCcEEEEcCCccCCC---------
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGT---GDMRGITE-----------KLDHFVDLGIESLWIQPFYPAGG---------   80 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~---g~~~~l~~-----------~l~~l~~lG~~~I~l~Pi~~~~~---------   80 (136)
                      +..||++.+|||+|+++|+++++++.   |+|.++.+           +|+||++||||+|||+||+++++         
T Consensus       208 ~~~~~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~~~~~~de~~~~~~  287 (718)
T 2e8y_A          208 PFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQTANGSSSGLAYVKELGVTHVELLPVNDFAGVDEEKPLDA  287 (718)
T ss_dssp             CCSCGGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGCTTCBCTTSCBCHHHHHHHHTCSEEEESCCEEESSSCTTSGGGC
T ss_pred             CCCChhhcEEEEEehHHhcCCCCCCCCCCCCeeccccccccccccchhhhHHHHHcCCCEEEECCccccCcccccccccc
Confidence            34568999999999999997766554   88888876           79999999999999999998755         


Q ss_pred             CCCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCCcc
Q psy12953         81 ADLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus        81 ~~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      .+|||++.||++++++||+        .+||++||++||++||+||+   +||++.+|
T Consensus       288 ~~wGYd~~dy~a~~~~yg~~p~~g~~~~~dfk~LV~~aH~~GI~VIlDvV~NHt~~~~  345 (718)
T 2e8y_A          288 YNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKRE  345 (718)
T ss_dssp             CCCCCSEEEEEEECSTTSSCSSSHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCSSGG
T ss_pred             CcCCCCccCCCCcCcccccCCCCccccHHHHHHHHHHHHHCCCEEEEEEecccccCcc
Confidence            3599999999999999997        69999999999999999999   99999877

>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*

Probab=99.93  E-value=9.5e-27  Score=188.18  Aligned_cols=94  Identities=18%  Similarity=0.363  Sum_probs=87.9

Q ss_pred             EEecccc-cCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHH
Q psy12953         35 QIYPRSF-RDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHS  112 (136)
Q Consensus        35 ~v~~~~f-~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~  112 (136)
                      +|++++| .+++++++|+|++++++|+||++||||+|||+||+++++ ++||++.||+++| |+|||.+||++||++||+
T Consensus         2 ~v~~~~F~~d~~~d~~G~~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~   80 (405)
T 1ht6_A            2 QVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVS-NEGYMPGRLYDIDASKYGNAAELKSLIGALHG   80 (405)
T ss_dssp             CCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSS-TTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHH
T ss_pred             ccEEEeEEcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCC-CCCCCccccccCCCccCCCHHHHHHHHHHHHH
Confidence            3567789 678888999999999999999999999999999999985 5999999999999 999999999999999999


Q ss_pred             CCCcEEE---eccCCCccCC
Q psy12953        113 RGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       113 ~Gi~vil---~nh~~~~~~~  129 (136)
                      +||+||+   +||++.+|+.
T Consensus        81 ~Gi~VilD~V~NH~~~~~~~  100 (405)
T 1ht6_A           81 KGVQAIADIVINHRCADYKD  100 (405)
T ss_dssp             TTCEEEEEECCSBCCCSEEC
T ss_pred             CCCEEEEEECcCcccCCCCC
Confidence            9999999   9999998874

>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose isomerization, beta/alpha-barrel, carbohydrate binding, transferase; 1.97A {Deinococcus geothermalis} PDB: 3uer_A*

Probab=99.93  E-value=1.8e-27  Score=202.86  Aligned_cols=100  Identities=29%  Similarity=0.547  Sum_probs=94.5

Q ss_pred             CCccccCCc--eEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCC--CCCCCCCccCCCCCCCCCC
Q psy12953         23 PQKEWWQTA--IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG--GADLGYDVSNYVDVDPLFG   98 (136)
Q Consensus        23 ~~~~w~~~~--~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~--~~~~gY~~~d~~~vd~~~G   98 (136)
                      ..+.||++.  +|||+++++|.       |+|++++++|+||++||||+|||+|+++++  ..++||++.||++|||+||
T Consensus        86 ~~~~W~~~~~~viY~~~~~~f~-------G~~~gl~~~LdyL~~lGv~~v~l~P~~~~~~~~~~~GY~~~dy~~i~~~~G  158 (655)
T 3ucq_A           86 LRPDWLQRPEMVGYVAYTDRFA-------GTLKGVEERLDYLEGLGVKYLHLMPLLRPREGENDGGYAVQDYRAVRPDLG  158 (655)
T ss_dssp             HCTTGGGSTTCCEEEECHHHHH-------SSHHHHHTTHHHHHHTTCCEEEECCCEEECSSCCGGGTSEEEEEEECGGGC
T ss_pred             cCCCcccCCceEEEEEehhhhC-------CCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCCCcCCcCcCccCccCC
Confidence            467899998  99999999997       999999999999999999999999999986  3679999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      |++||++||++||++||+||+   +||++.+|++
T Consensus       159 t~~d~~~lv~~~h~~Gi~Vi~D~V~NH~s~~~~w  192 (655)
T 3ucq_A          159 TMDDLSALARALRGRGISLVLDLVLNHVAREHAW  192 (655)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHH
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEeeccccccchHH
Confidence            999999999999999999999   9999988854

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=99.93  E-value=2.2e-26  Score=193.09  Aligned_cols=100  Identities=29%  Similarity=0.407  Sum_probs=92.3

Q ss_pred             ccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHH
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      ..+|++.+|||+|+++|+..     |+|++++++|+||++||||+|||+||++.+. .+|||++.||+++||+|||++||
T Consensus        96 ~~~~~~~~iYe~~~~~f~~~-----G~~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~Gt~~d~  170 (558)
T 3vgf_A           96 FLKKEDLIIYEIHVGTFTPE-----GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGF  170 (558)
T ss_dssp             CCCGGGCCEEEECHHHHSSS-----CSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGTHHHHH
T ss_pred             CCCccccEEEEEeHHHhCCC-----CCHHHHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccccccccccccCCHHHH
Confidence            44578999999999999753     8999999999999999999999999999876 67999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ++||++||++||+||+   +||++.+++.
T Consensus       171 ~~lv~~~h~~Gi~VilD~V~NH~~~~~~~  199 (558)
T 3vgf_A          171 RKLVDEAHKKGLGVILDVVYNHVGPEGNY  199 (558)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSCCCSSSCC
T ss_pred             HHHHHHHHHcCCEEEEEEeeccccCCCCc
Confidence            9999999999999999   9999877654

>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*

Probab=99.93  E-value=4.7e-26  Score=185.82  Aligned_cols=95  Identities=21%  Similarity=0.387  Sum_probs=88.1

Q ss_pred             CCceEEEEecccccCcCCCCCCC-HHHHHHhHHHHHHcCCcEEEEcCCccCCCC--CCCCCccCCC---------CCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGD-MRGITEKLDHFVDLGIESLWIQPFYPAGGA--DLGYDVSNYV---------DVDPL   96 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~-~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~--~~gY~~~d~~---------~vd~~   96 (136)
                      ++.+|||++++.|.+     +|+ |++++++|+||++||||+|||+||++++..  ++||++.||+         .|||+
T Consensus         8 ~~~viyq~f~w~~~~-----~G~~~~gi~~~Ldyl~~lGvt~I~l~Pi~~~~~~~~~~gY~~~dy~~lg~~~~~~~id~~   82 (435)
T 1mxg_A            8 EGGVIMQAFYWDVPG-----GGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETR   82 (435)
T ss_dssp             GTCCEEECCCTTCCC-----SSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCS
T ss_pred             CCcEEEEEEEeccCC-----CCCHHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCcCcccccccccccccCcCCCC
Confidence            678999999999864     389 999999999999999999999999999864  6999999999         59999


Q ss_pred             CCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         97 FGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        97 ~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |||.+||++||++||++||+||+   +||++.++.
T Consensus        83 ~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~  117 (435)
T 1mxg_A           83 FGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDL  117 (435)
T ss_dssp             SCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEECcccccCCCc
Confidence            99999999999999999999999   999987653

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=99.93  E-value=2.8e-26  Score=198.81  Aligned_cols=109  Identities=17%  Similarity=0.338  Sum_probs=94.7

Q ss_pred             CCccccCCceEEEEecccccCcCC----CCCCCHHHH-------HHhHHHHHHcCCcEEEEcCCccCCC-----------
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNG----DGTGDMRGI-------TEKLDHFVDLGIESLWIQPFYPAGG-----------   80 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~----~~~g~~~~l-------~~~l~~l~~lG~~~I~l~Pi~~~~~-----------   80 (136)
                      |...+|++.+|||+|+++|+..++    +..|+|.++       +++|+|||+||||+||||||++.++           
T Consensus       245 p~~~~~~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~~~~~~~ie~L~yLk~LGVtaveLmPv~e~~~~~~~~~~~~~~  324 (884)
T 4aio_A          245 PKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFV  324 (884)
T ss_dssp             CCCSCGGGCCEEEECHHHHHTTCTTSCTTTTTSGGGGSCTTSHHHHHHHHHHHHTCCEEEECCCEEESSSCSCGGGCCCC
T ss_pred             CCCCCcccCEEEEEEcCccccCCCCCCccccCcccccccchhhHHHHhHHHHHcCCCEEEeccccccCcccccccccccc
Confidence            344578999999999999975433    346888775       7889999999999999999998753           


Q ss_pred             ---------------------------CCCCCCccCCCCCCCCCCCH-------HHHHHHHHHHHHCCCcEEE---eccC
Q psy12953         81 ---------------------------ADLGYDVSNYVDVDPLFGDM-------HDFEILIEEAHSRGKPKRT---FREV  123 (136)
Q Consensus        81 ---------------------------~~~gY~~~d~~~vd~~~Gt~-------~~~~~lv~~ah~~Gi~vil---~nh~  123 (136)
                                                 .+|||++.||++++++|||.       +||++||++||++||+||+   +||+
T Consensus       325 d~~~l~~~~~~~~~~~~l~~~~~~~~~~~WGYd~~~y~a~~~~ygt~~d~~~~~~efk~LV~~aH~~GIkVIlDvV~NHt  404 (884)
T 4aio_A          325 DECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHL  404 (884)
T ss_dssp             CHHHHTTSCTTCSHHHHHHHHHTTTSSCCCCCCEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred             ccccccccCCchHHHHhhhhhhhhccccccCcCcccccCCCcccccCccccchHHHHHHHHHHHHhcCCceeeeeccccc
Confidence                                       46999999999999999994       5699999999999999999   9999


Q ss_pred             CCccCCCC
Q psy12953        124 TKSFANNQ  131 (136)
Q Consensus       124 ~~~~~~~~  131 (136)
                      +.+|+++.
T Consensus       405 s~~h~wf~  412 (884)
T 4aio_A          405 DSSGPCGI  412 (884)
T ss_dssp             SCCSSSST
T ss_pred             cCCCcchh
Confidence            99998765

>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase, maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*

Probab=99.93  E-value=3.1e-26  Score=194.55  Aligned_cols=107  Identities=20%  Similarity=0.345  Sum_probs=95.3

Q ss_pred             CCCccccCCceEEEEecccccCcCCC--------------CCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC------C
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGD--------------GTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG------A   81 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~--------------~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~------~   81 (136)
                      .+++.||++.+|||+|+++|++.+.+              ..|+|++++++|+||++||||+|||+||++.+.      .
T Consensus        75 ~~~~~~~~~~~iYe~~~~~f~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~g~~  154 (637)
T 1gjw_A           75 EKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDA  154 (637)
T ss_dssp             CCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSS
T ss_pred             cCccCchhhCeEEEEeeccccCCCCCCCCccccccccchhccccHHHHHHHHHHHHHcCCCEEEeCCCeecccccccCCC
Confidence            35578999999999999999865432              248999999999999999999999999998763      3


Q ss_pred             CCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         82 DLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        82 ~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      +|||++.||++++|+||+        .+||++||++||++||+||+   +||++.+++
T Consensus       155 ~~gY~~~~~~~~~~~~g~~~~~~~~~~~~~~~lv~~~H~~Gi~VilD~V~nH~~~~~~  212 (637)
T 1gjw_A          155 PSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSD  212 (637)
T ss_dssp             CCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCG
T ss_pred             CCccCCCCcCCcCcccCCCcccccchHHHHHHHHHHHHHCCCEEEEEECcCCCcCcch
Confidence            469999999999999999        69999999999999999999   899988775

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=99.92  E-value=8.8e-26  Score=191.63  Aligned_cols=98  Identities=23%  Similarity=0.433  Sum_probs=90.9

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .|++.+|||+|+++|+.     .|+|++++++|+||++||||+|||+||++.+. .+|||++.||+++||+||+++||++
T Consensus       133 ~~~~~~iYe~~v~~f~~-----~G~~~~~~~~L~yl~~lGv~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~~~~~  207 (618)
T 3m07_A          133 RWEQAVVYEMHTGTFTP-----EGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLLYAPHSAYGTPDDFKA  207 (618)
T ss_dssp             CGGGCCEEEECHHHHSS-----SCSHHHHHTTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECTTTCCHHHHHH
T ss_pred             ChhhCeEEEEehhhcCC-----CCCHHHHHHHHHHHHHcCCCEEEeCChhccCCCCCCCcCcccccccCcCcCCHHHHHH
Confidence            47899999999999975     38999999999999999999999999988765 6799999999999999999999999


Q ss_pred             HHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        106 LIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       106 lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ||++||++||+||+   +||++.+++.
T Consensus       208 lv~~~H~~Gi~VilD~V~NH~~~~~~~  234 (618)
T 3m07_A          208 FIDAAHGYGLSVVLDIVLNHFGPEGNY  234 (618)
T ss_dssp             HHHHHHHTTCEEEEEECCSCCCSSSCC
T ss_pred             HHHHHHHCCCEEEEeecCccCCCCccc
Confidence            99999999999999   9999876654

>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*

Probab=99.92  E-value=1.2e-25  Score=185.06  Aligned_cols=93  Identities=15%  Similarity=0.338  Sum_probs=85.7

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCC---------CCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVD---------VDPLFG   98 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~---------vd~~~G   98 (136)
                      ++.+|||++.+.|.+    .+|+|++++++|+||++||||+|||+||+++.+ .++||++.||++         |||+||
T Consensus         5 ~~~vi~q~f~w~~~~----~gG~~~gi~~~LdyL~~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~~~~~~q~~~idp~~G   80 (485)
T 1wpc_A            5 TNGTMMQYFEWYLPN----DGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYG   80 (485)
T ss_dssp             CCCCEEECCCTTCCS----SSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSCSSC
T ss_pred             CCceEEEEEecCCCC----CCCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCCCeecccccccccccCccCCCCC
Confidence            478999999999874    359999999999999999999999999999654 579999999995         999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      |.+||++||++||++||+||+   +||++.
T Consensus        81 t~~df~~Lv~~aH~~Gi~VilD~V~NH~~~  110 (485)
T 1wpc_A           81 TRSQLQAAVTSLKNNGIQVYGDVVMNHKGG  110 (485)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEECS
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEeccccCC
Confidence            999999999999999999999   999963

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=99.92  E-value=1.9e-25  Score=191.93  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=89.8

Q ss_pred             cccCCceEEEEecccccCcCC------CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-------------------C
Q psy12953         26 EWWQTAIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG-------------------G   80 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f~~~~~------~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-------------------~   80 (136)
                      .+|++.+|||+|+++|+....      ...|+|++++++|+||++||||+|||+||++.+                   .
T Consensus       147 ~~~~~~viYE~hv~~f~~~~~~~~~~~~~~Gt~~gi~~~L~yLk~LGvt~I~L~Pi~~~~~~~e~~~~~~~~~~~~~~~~  226 (714)
T 2ya0_A          147 KTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSN  226 (714)
T ss_dssp             SSGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCS
T ss_pred             CCccccEEEEEEehhhccCCCCccccccCCcCHHHHHHHhHHHHHcCCCEEEECCcccccccCcccccccccccccCcCc
Confidence            457899999999999985321      235999999999999999999999999999731                   1


Q ss_pred             CCCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCCcc
Q psy12953         81 ADLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus        81 ~~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      ++|||++.||++++++||+        .+||++||++||++||+|||   +||++.++
T Consensus       227 ~~wGY~~~~~~a~~~~yg~~~~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~  284 (714)
T 2ya0_A          227 YNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD  284 (714)
T ss_dssp             CCCSCSBSCSSSBCSTTSSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTBCSCHH
T ss_pred             CccCCCCccCcccChhhccCCCCccchHHHHHHHHHHHHHCCCEEEEEeccCcccCcc
Confidence            3599999999999999998        79999999999999999999   99998754

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=99.92  E-value=5.7e-26  Score=199.79  Aligned_cols=105  Identities=21%  Similarity=0.327  Sum_probs=89.8

Q ss_pred             CCccccCCceEEEEecccccCcCCCCC---CCHHHHHHh-----------HHHHHHcCCcEEEEcCCccCCC--------
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDGT---GDMRGITEK-----------LDHFVDLGIESLWIQPFYPAGG--------   80 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~~---g~~~~l~~~-----------l~~l~~lG~~~I~l~Pi~~~~~--------   80 (136)
                      |...||++.+|||+|+++|+++++++.   |+|.++.++           |+||++||||+|||+||+++++        
T Consensus       425 p~~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L~Pi~e~~~~de~~~~~  504 (921)
T 2wan_A          425 QTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTKGPDHVKTGIDSLKELGITTVQLQPVEEFNSIDETQPDT  504 (921)
T ss_dssp             CCCSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGGGGCCSCBCGGGCBCHHHHHHHHTCCEEEESCCEEESSSCTTSTTS
T ss_pred             CCCCCchhcEEEEEEcCcccCCCCCCCCCCCCeeheeccccccccccchhhHHHHHcCCCEEEeCCccccCcccccccCc
Confidence            445789999999999999997665543   788888765           9999999999999999999874        


Q ss_pred             CCCCCCccCCCCCCCC-----CCC--HHHHHHHHHHHHHCCCcEEE---eccCCCcc
Q psy12953         81 ADLGYDVSNYVDVDPL-----FGD--MHDFEILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus        81 ~~~gY~~~d~~~vd~~-----~Gt--~~~~~~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      .+|||++.||++++++     +|+  ++||++||++||++||+|||   +||++.+|
T Consensus       505 ~~wGYd~~dy~ap~~~y~~dp~Gt~~~~dfk~LV~~aH~~GI~VILDvV~NHt~~~~  561 (921)
T 2wan_A          505 YNWGYDPRNYNVPEGAYATTPEGTARITELKQLIQSLHQQRIGVNMDVVYNHTFDVM  561 (921)
T ss_dssp             CCCCCSEEEEEEECGGGSSCSSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCSS
T ss_pred             CCcCCCCcCCCCCCcccccCCCCCccHHHHHHHHHHHHHcCCEEEEEEccccccccc
Confidence            3699999999754444     555  79999999999999999999   99999877

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=99.92  E-value=5.8e-25  Score=192.45  Aligned_cols=105  Identities=22%  Similarity=0.453  Sum_probs=91.8

Q ss_pred             CccccCCceEEEEecccccCcCC------CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccC------------------C
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPA------------------G   79 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~------~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~------------------~   79 (136)
                      ...+|++.+|||+|+++|+....      ++.|+|++++++|+||++||||+|||+||++.                  .
T Consensus       261 ~~~~~~~~vIYElhvr~ft~~~~~~~~~~~~~Gt~~gl~~~L~yLk~LGvtaV~L~Pi~~~~~~~e~~~~~~~~~~~~~~  340 (877)
T 3faw_A          261 NFKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEKLDYLQKLGVTHIQLLPVLSYFYVNEMDKSRSTAYTSSDN  340 (877)
T ss_dssp             TCCSGGGCEEEEECTTGGGCCGGGTTTCSSCTTSHHHHGGGHHHHHHHTCSEEEESCCBCBSSCBTTCCCCCCSCCSSSC
T ss_pred             CCCCccccEEEEEEchHhcCCCCCCccccCCCCCHHHHHHHHHHHHHcCCCEEEEcchhcccccccccccccccccCCCC
Confidence            34578999999999999986332      23499999999999999999999999999973                  1


Q ss_pred             CCCCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         80 GADLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        80 ~~~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      .++|||++.||++++++||+        .+||++||++||++||+||+   +||++.+++
T Consensus       341 ~ynwGY~~~~~~a~~~~yGt~p~~~~~~~~efk~lV~~~H~~GI~VILDvV~NH~a~~~~  400 (877)
T 3faw_A          341 NYNWGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAKTYL  400 (877)
T ss_dssp             SCCCSCSBSCSSSBCSTTCSCTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTCCSCTHH
T ss_pred             CCccCcCcCccccccccccCCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeeccccCccc
Confidence            13499999999999999999        69999999999999999999   999987643

>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis, glycoside hydrolase FA; 1.80A {Streptomyces coelicolor} PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*

Probab=99.92  E-value=3.8e-25  Score=189.78  Aligned_cols=103  Identities=20%  Similarity=0.430  Sum_probs=91.0

Q ss_pred             ccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--------------CCCC--CCcc
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--------------ADLG--YDVS   88 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--------------~~~g--Y~~~   88 (136)
                      .+++...+|||+++++|.+.+++ +|+|++++++|+||++||||+|||+||+++++              .++|  |++.
T Consensus       226 r~~~~~~~iYEi~~rsf~~~~~~-~Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~~~g~~n~~~~~~~d~GspY~i~  304 (695)
T 3zss_A          226 RERALYGAWYEFFPRSEGTPHTP-HGTFRTAARRLPAIAAMGFDVVYLPPIHPIGTTHRKGRNNTLSATGDDVGVPWAIG  304 (695)
T ss_dssp             CHHHHCEEEEECCGGGSCCSSCC-SCCHHHHGGGHHHHHHTTCCEEEECCCSCBCCTTCCCGGGCSSCCTTCCCCTTSBC
T ss_pred             ccccccceEEEEehhHhcCCCCC-CCCHHHHHHHHHHHHhCCCCEEEECCcccCCccccccccccccccccCCCCccccc
Confidence            35677889999999999987765 89999999999999999999999999999863              2345  9888


Q ss_pred             C----CCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         89 N----YVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        89 d----~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      |    |++|||+|||.+||++||++||++||+||+   +|| +.+|+.
T Consensus       305 d~~~~y~~idp~~Gt~edfk~LV~~aH~~GI~VilD~V~Nh-s~~~~~  351 (695)
T 3zss_A          305 SPEGGHDSIHPALGTLDDFDHFVTEAGKLGLEIALDFALQC-SPDHPW  351 (695)
T ss_dssp             BTTBCTTSCCTTTCCHHHHHHHHHHHHHTTCEEEEEECCEE-CTTSTH
T ss_pred             CCCCCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeeccC-Cccchh
Confidence            8    999999999999999999999999999999   888 455543

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=99.92  E-value=3.4e-25  Score=191.55  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=90.5

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHH-hHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITE-KLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~-~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      ++.+|||+|+++|+.  .++.|+|+++++ +|+||++||||+|||+||++++. .+|||++.||++++|+|||++||++|
T Consensus       179 ~~~~IYE~hv~~~~~--~~~~Gt~~~l~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~dy~a~~~~~Gt~~df~~l  256 (755)
T 3aml_A          179 DAPRIYEAHVGMSGE--EPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYL  256 (755)
T ss_dssp             SSCEEEEEESTTCSS--SSSCCCHHHHHHHTHHHHHHTTCCEEEEESCEECSCGGGTTCSCSEEEEECGGGCCHHHHHHH
T ss_pred             CCCEEEEEeeecccc--CCCCCCHHHHHHHHHHHHHHcCCCEEEECchhcCCCCCCCCCccCCCCccCCCCCCHHHHHHH
Confidence            578999999999974  345799999987 79999999999999999999875 67999999999999999999999999


Q ss_pred             HHHHHHCCCcEEE---eccCCCccC
Q psy12953        107 IEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus       107 v~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |++||++||+||+   +||++.+|+
T Consensus       257 v~~~H~~Gi~VilD~V~NH~~~~~~  281 (755)
T 3aml_A          257 VDKAHSLGLRVLMDVVHSHASNNVT  281 (755)
T ss_dssp             HHHHHHTTCEEEEEECCSCBCCCTT
T ss_pred             HHHHHHCCCEEEEEEeccccccccc
Confidence            9999999999999   999988875

>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A

Probab=99.92  E-value=3.4e-25  Score=182.11  Aligned_cols=93  Identities=22%  Similarity=0.372  Sum_probs=85.1

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCC---------CCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVD---------VDPLFG   98 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~---------vd~~~G   98 (136)
                      ++.+|||++.+.+.+    .+|+|++++++|+||++||||+|||+||+++.+ .++||++.||++         |||+||
T Consensus         3 ~~~vi~q~f~w~~~~----~gG~~~gi~~~LdyL~~LGvt~I~l~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~idp~~G   78 (480)
T 1ud2_A            3 LNGTMMQYYEWHLEN----DGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYG   78 (480)
T ss_dssp             CCCCEEECCCTTCCC----SSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSC
T ss_pred             CCceEEEeeeccCCC----CCCcHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCCCcCccchhhcccccccCccCCCCC
Confidence            367999999988764    358999999999999999999999999999654 579999999995         999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      |.+||++||++||++||+||+   +||++.
T Consensus        79 t~~df~~lv~~aH~~Gi~VilD~V~NH~~~  108 (480)
T 1ud2_A           79 TKAQLERAIGSLKSNDINVYGDVVMNHKMG  108 (480)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEccCcccc
Confidence            999999999999999999999   999963

>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A

Probab=99.91  E-value=6.3e-25  Score=180.61  Aligned_cols=93  Identities=20%  Similarity=0.377  Sum_probs=84.9

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCC---------CCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVD---------VDPLFG   98 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~---------vd~~~G   98 (136)
                      ++.+|||++.+.+.+    .+|+|++++++|+||++||||+|||+||+++.+ .++||++.||++         |||+||
T Consensus         1 ~~~vi~q~f~w~~~~----~gG~~~gi~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~GY~~~dy~~~~~~~~~~~id~~~G   76 (483)
T 3bh4_A            1 VNGTLMQYFEWYTPN----DGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYG   76 (483)
T ss_dssp             CCCCEEECCCTTCCS----SSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTSCSSSEEETTCSSCSCCSSCSSCSSC
T ss_pred             CCccEEEEEEeccCC----CCCCHHHHHHHHHHHHhcCCCEEEcCccccCCCCCCCCcccccccccccccccCccCCCCC
Confidence            467999999888753    358999999999999999999999999999754 579999999995         999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      |.+||++||++||++||+||+   +||++.
T Consensus        77 t~~df~~lv~~aH~~Gi~VilD~V~NH~~~  106 (483)
T 3bh4_A           77 TKSELQDAIGSLHSRNVQVYGDVVLNHKAG  106 (483)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEccCcccC
Confidence            999999999999999999999   999964

>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1

Probab=99.91  E-value=1.1e-24  Score=180.82  Aligned_cols=93  Identities=24%  Similarity=0.433  Sum_probs=85.3

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCC---------CCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVD---------VDPLFG   98 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~---------vd~~~G   98 (136)
                      ++.+|||++...+.+    ++|+|++++++|+||++||||+|||+||+++.+ .++||++.||++         |||+||
T Consensus         4 ~~~v~~q~F~W~~~~----~gG~~~gi~~~LdyLk~LGvt~IwL~Pi~~~~~~~~~GY~~~dy~~l~~f~~~~~idp~~G   79 (515)
T 1hvx_A            4 FNGTMMQYFEWYLPD----DGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYG   79 (515)
T ss_dssp             CCCCEEECCCTTCCS----SSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSC
T ss_pred             CCceEEEEEEccCCC----CCCcHHHHHHHHHHHHhcCCCEEEeCCcccCCCCCCCCcCeecccccccccccCccCCCCC
Confidence            578999999888764    359999999999999999999999999999754 679999999997         999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      |.+||++||++||++||+||+   +||++.
T Consensus        80 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~  109 (515)
T 1hvx_A           80 TKAQYLQAIQAAHAAGMQVYADVVFDHKGG  109 (515)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEecCCccC
Confidence            999999999999999999999   999963

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.8e-24  Score=186.28  Aligned_cols=95  Identities=23%  Similarity=0.312  Sum_probs=88.2

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      ++++.+|||+|+++|..+     |+|++++++| +||++||||+|||+||++++. .+|||++.||++++++|||++||+
T Consensus       242 ~~~~~~IYE~h~~s~~~~-----G~~~~l~~~l~~yLk~lG~t~I~L~Pi~e~~~~~~wGY~~~~y~a~~~~yGt~~dfk  316 (722)
T 3k1d_A          242 VNEAMSTYEVHLGSWRPG-----LSYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTSRFGTPDDFR  316 (722)
T ss_dssp             GGSCCEEEEECTTTSSTT-----CCHHHHHHHHHHHHHHHTCSEEEESCCEECSCGGGTTCSCSEEEEECGGGCCHHHHH
T ss_pred             CCCCeEEEEEehhhccCC-----CCHHHHHHHHHHHHHHcCCCeEEECCcccCCCCCCCCCCcccCcCccccCCCHHHHH
Confidence            346789999999999863     9999999998 999999999999999999887 469999999999999999999999


Q ss_pred             HHHHHHHHCCCcEEE---eccCCCc
Q psy12953        105 ILIEEAHSRGKPKRT---FREVTKS  126 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil---~nh~~~~  126 (136)
                      +||++||++||+||+   +||++.+
T Consensus       317 ~lV~~~H~~GI~VilD~V~NH~~~~  341 (722)
T 3k1d_A          317 ALVDALHQAGIGVIVDWVPAHFPKD  341 (722)
T ss_dssp             HHHHHHHHTTCEEEEEECTTCCCCC
T ss_pred             HHHHHHHHcCCEEEEEEEeeccCCc
Confidence            999999999999999   9998764

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=99.91  E-value=2e-24  Score=191.42  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=89.4

Q ss_pred             cccCCceEEEEecccccCcCC------CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-------------------C
Q psy12953         26 EWWQTAIMYQIYPRSFRDVNG------DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG-------------------G   80 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f~~~~~------~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-------------------~   80 (136)
                      .+|++.+|||+|+++|+....      ...|+|++++++|+||++||||+|||+||++.+                   .
T Consensus       454 ~~~~~~vIYE~hv~~ft~~~~~~~~~~~~~Gt~~gl~~~LdyLk~LGvtaV~L~Pv~~~~~~~e~~~~~~~~~y~~~~~~  533 (1014)
T 2ya1_A          454 KTREDAVIYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEKLDYLKDLGVTHIQLLPVLSYYFVNELKNHERLSDYASSNSN  533 (1014)
T ss_dssp             SSGGGCCEEEECHHHHHCCGGGTTTCSSCTTSHHHHHTTHHHHHHHTCSEEEESCCBCBSSCBGGGTTSCCCSCCSSSCS
T ss_pred             cCccccEEEEEecCCCCCCCCccccccCCCcCHHHHHHHhHHHHHcCCCeEEecCcccccccccccccccccccccCcCC
Confidence            457889999999999985321      235999999999999999999999999999741                   1


Q ss_pred             CCCCCCccCCCCCCCCCCC--------HHHHHHHHHHHHHCCCcEEE---eccCCCcc
Q psy12953         81 ADLGYDVSNYVDVDPLFGD--------MHDFEILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus        81 ~~~gY~~~d~~~vd~~~Gt--------~~~~~~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      ++|||++.||++++++||+        .+||++||++||++||+|||   +||++.++
T Consensus       534 ynwGY~~~~y~a~~~~ygt~p~~~~~~~~efk~lV~~~H~~GI~VIlDvV~NHt~~~~  591 (1014)
T 2ya1_A          534 YNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD  591 (1014)
T ss_dssp             CCCSCSBSCSSSBCSTTCSCTTCTTHHHHHHHHHHHHHHTTTCEEEEEECTTCCSCHH
T ss_pred             cccCCCcCcCccccccccCCCccccchHHHHHHHHHHHHHcCCEEEEEEecccccccc
Confidence            3599999999999999998        69999999999999999999   99998754

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=99.89  E-value=2.5e-24  Score=191.64  Aligned_cols=105  Identities=12%  Similarity=0.235  Sum_probs=91.0

Q ss_pred             ccCCc---eEEEEecccccCcCCCC----CCCHHHHHH-------hHHHHHHcCCcEEEEcCCccC--------------
Q psy12953         27 WWQTA---IMYQIYPRSFRDVNGDG----TGDMRGITE-------KLDHFVDLGIESLWIQPFYPA--------------   78 (136)
Q Consensus        27 w~~~~---~iY~v~~~~f~~~~~~~----~g~~~~l~~-------~l~~l~~lG~~~I~l~Pi~~~--------------   78 (136)
                      .|++.   +|||+|+++|+..++++    .|+|.++++       +|+||++||||+|||+||++.              
T Consensus       417 ~~~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gt~~g~~e~~~~~i~~L~~L~~lGvt~i~LlPv~~~~~v~e~~~~~~~~~  496 (1083)
T 2fhf_A          417 TKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVADIQ  496 (1083)
T ss_dssp             SHHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCCTT
T ss_pred             ccccccccEEEEEecchhcCCCCCCCcCCCCChhhhhhhhhhhHHHHHHHHhcCCCEEEECCcccccccccccccccccc
Confidence            34555   99999999999876655    499999966       699999999999999999952              


Q ss_pred             --------------------------------------------------------CCCCCCCCccCCCCCCCCCCC---
Q psy12953         79 --------------------------------------------------------GGADLGYDVSNYVDVDPLFGD---   99 (136)
Q Consensus        79 --------------------------------------------------------~~~~~gY~~~d~~~vd~~~Gt---   99 (136)
                                                                              ..++|||++.||++++|+||+   
T Consensus       497 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~y~~~~d~~nwGYd~~~y~a~~~~yGt~p~  576 (1083)
T 2fhf_A          497 QPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPE  576 (1083)
T ss_dssp             SBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECSTTSSCCS
T ss_pred             cccccccccccccccccccccccccccchhhhhcccccccchhhhhhhhhccccccCCCCCCCCcCcCCCcChhhcCCCC
Confidence                                                                    112499999999999999999   


Q ss_pred             ----HHHHHHHHHHHHHC-CCcEEE---eccCCCccCCCC
Q psy12953        100 ----MHDFEILIEEAHSR-GKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus       100 ----~~~~~~lv~~ah~~-Gi~vil---~nh~~~~~~~~~  131 (136)
                          .+||++||++||++ ||+|||   +||++.+|+.+.
T Consensus       577 ~~~r~~efk~LV~~~H~~~GI~VILDvV~NHt~~~~~~~~  616 (1083)
T 2fhf_A          577 GTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDR  616 (1083)
T ss_dssp             TTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCT
T ss_pred             ccccHHHHHHHHHHHHhhcCCEEEEEeccccCcCCCccch
Confidence                89999999999998 999999   999999886554

>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A {Streptococcus mutans} PDB: 3aic_A* 3aib_A*

Probab=99.89  E-value=1.2e-23  Score=183.19  Aligned_cols=100  Identities=18%  Similarity=0.331  Sum_probs=86.8

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCC-HHHHHHhHHHHHHcCCcEEEEcCCccCCCC--------CCCCCccCCCCCC
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGD-MRGITEKLDHFVDLGIESLWIQPFYPAGGA--------DLGYDVSNYVDVD   94 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~-~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~--------~~gY~~~d~~~vd   94 (136)
                      +..||++.+|||+++ +|...+.++.+. +++++++|+||++||||+|||+||++++..        ++||++.||++++
T Consensus       604 ~~~~~~~~ViYe~f~-~~~s~~~~g~~~~~~gi~~~l~yLk~LGvt~I~L~Pi~~~~~~~~~~~~~~~~GY~~~d~~~i~  682 (844)
T 3aie_A          604 QNAALDSRVMFEGFS-NFQAFATKKEEYTNVVIAKNVDKFAEWGVTDFEMAPQYVSSTDGSFLDSVIQNGYAFTDRYDLG  682 (844)
T ss_dssp             CSHHHHTCCEEECCC-TTCCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSS
T ss_pred             cCCccCceEEEEeCC-CcccCCCCCCcccHHHHHHHHHHHHHCCCCeEEECCcccCCCCCccccccCCCCCccccCccCC
Confidence            456789999999888 343333333344 399999999999999999999999999864        7999999999999


Q ss_pred             ----CCCCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953         95 ----PLFGDMHDFEILIEEAHSRGKPKRT---FREVT  124 (136)
Q Consensus        95 ----~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~  124 (136)
                          |+||+++||++||++||++||+||+   +||++
T Consensus       683 es~~~~~Gt~~df~~lv~~~H~~GI~VilD~V~NH~~  719 (844)
T 3aie_A          683 ISKPNKYGTADDLVKAIKALHSKGIKVMADWVPDQMY  719 (844)
T ss_dssp             CSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence                9999999999999999999999999   99995

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=99.89  E-value=3.4e-23  Score=172.41  Aligned_cols=96  Identities=10%  Similarity=0.167  Sum_probs=85.2

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCH-HHHHHhHHHHHHcCCcEEEEcCCccC--------CC-CCCCCCccCCCCCC--
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPA--------GG-ADLGYDVSNYVDVD--   94 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~-~~l~~~l~~l~~lG~~~I~l~Pi~~~--------~~-~~~gY~~~d~~~vd--   94 (136)
                      .-.+.+|||++...+.+..   +||| ++++++|+||++||||+|||+||++.        ++ .++||+   |+++|  
T Consensus        13 ~~~~~vi~q~F~w~~~~~~---gGd~~~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~   86 (527)
T 1gcy_A           13 HGGDEIILQGFHWNVVREA---PNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKN   86 (527)
T ss_dssp             GGGCCCEEECCCTTHHHHS---TTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSC
T ss_pred             cCCCcEEEEEEEcCCCccc---CCcHHHHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCC
Confidence            4567899999876654333   4999 99999999999999999999999953        22 679999   99999  


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         95 PLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        95 ~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |+|||.+||++||++||++||+||+   +||++.+|+
T Consensus        87 p~~Gt~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~~~  123 (527)
T 1gcy_A           87 GRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYP  123 (527)
T ss_dssp             SSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEEeecCcCCCCC
Confidence            9999999999999999999999999   999999887

>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A

Probab=99.89  E-value=1.2e-23  Score=170.78  Aligned_cols=91  Identities=12%  Similarity=0.213  Sum_probs=82.2

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCC----------CCCCCccCCCCCCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA----------DLGYDVSNYVDVDPLFG   98 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~----------~~gY~~~d~~~vd~~~G   98 (136)
                      ++.+|||++++           +|++++++|+||++||||+|||+||++....          +|||++.||+.+||+||
T Consensus         4 ~~~~~~q~f~~-----------~~~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G   72 (422)
T 1ua7_A            4 KSGTILHAWNW-----------SFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLG   72 (422)
T ss_dssp             TTSCEEECTTB-----------CHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTE
T ss_pred             cCcEEEEEecC-----------CHHHHHHHHHHHHHcCCCEEEeCCccccccCCcCcCccCCccccccceeeeccCCCCC
Confidence            57899998886           4689999999999999999999999886431          57999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      +.+||++||++||++||+||+   +||++.+|+..
T Consensus        73 ~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~~~~  107 (422)
T 1ua7_A           73 TEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAI  107 (422)
T ss_dssp             EHHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTS
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEeccCcccCCcccc
Confidence            999999999999999999999   99999888653

>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*

Probab=99.87  E-value=2.1e-22  Score=164.44  Aligned_cols=78  Identities=9%  Similarity=0.136  Sum_probs=71.4

Q ss_pred             CCHHHHHHh-HHHHHHcCCcEEEEcCCccCCCCC---CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---ecc
Q psy12953         50 GDMRGITEK-LDHFVDLGIESLWIQPFYPAGGAD---LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FRE  122 (136)
Q Consensus        50 g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~~~---~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh  122 (136)
                      ++|++++++ ++||++||||+|||+||++++...   +||++.|| +|||+|||.+||++||++||++||+||+   +||
T Consensus        11 w~~~gi~~~lldyL~~LGv~~I~l~Pi~~~~~~~~~~~gY~~~~y-~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH   89 (448)
T 1g94_A           11 WNWQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINH   89 (448)
T ss_dssp             CCHHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSE
T ss_pred             CcHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCccccccccc-ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeecc
Confidence            567899998 599999999999999999997632   69999986 8999999999999999999999999999   999


Q ss_pred             CCCccC
Q psy12953        123 VTKSFA  128 (136)
Q Consensus       123 ~~~~~~  128 (136)
                      ++.+|+
T Consensus        90 ~~~~~~   95 (448)
T 1g94_A           90 MAAGSG   95 (448)
T ss_dssp             ECSSCE
T ss_pred             ccCCCC
Confidence            998873

>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*

Probab=99.87  E-value=9.1e-23  Score=167.63  Aligned_cols=91  Identities=14%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             ccccCCceEEEEecccccCcCCCCCCCHHHHHHh-HHHHHHcCCcEEEEcCCccCCCCC-----CCCCccCCCCCCCCCC
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEK-LDHFVDLGIESLWIQPFYPAGGAD-----LGYDVSNYVDVDPLFG   98 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~-l~~l~~lG~~~I~l~Pi~~~~~~~-----~gY~~~d~~~vd~~~G   98 (136)
                      ..|-.+.+|+|++...           |++++++ |+||++||||+|||+||++++..+     +||++.|| +|||+||
T Consensus         5 ~~~~~~~~i~~~F~w~-----------~~gi~~~~ldyL~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy-~idp~~G   72 (471)
T 1jae_A            5 NFASGRNSIVHLFEWK-----------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IINTRSG   72 (471)
T ss_dssp             CCCTTCEEEEEETTCC-----------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSEETTE
T ss_pred             CCCCCCCeEEEEecCC-----------HHHHHHHHHHHHHHcCCCEEEeCccccccCCCCCCcccccccccc-cccCCCC
Confidence            3456788999987754           6799999 599999999999999999997642     58999997 9999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCcc
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      |.+||++||++||++||+||+   +||++.+|
T Consensus        73 t~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~  104 (471)
T 1jae_A           73 DESAFTDMTRRCNDAGVRIYVDAVINHMTGMN  104 (471)
T ss_dssp             EHHHHHHHHHHHHHTTCEEEEEECCSBCCSSC
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEEecccccCCC
Confidence            999999999999999999999   99999886

>3klk_A Glucansucrase; native form, open conformation, multidomain protein, glycosyltransferase, transferase; 1.65A {Lactobacillus reuteri} PDB: 3kll_A* 3hz3_A* 4amc_A

Probab=99.86  E-value=7.4e-22  Score=174.34  Aligned_cols=104  Identities=15%  Similarity=0.240  Sum_probs=87.3

Q ss_pred             CCCCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCC--------CCCCCCCccCCCC
Q psy12953         21 ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAG--------GADLGYDVSNYVD   92 (136)
Q Consensus        21 ~~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~--------~~~~gY~~~d~~~   92 (136)
                      ..++..+|.+.||||-+...-........|+|++++++|+||++||||+|||+||++++        ..++||++.||+.
T Consensus       654 ~~~s~~~l~~~VIYEGFt~~~~~~~~~~~gt~~gi~~kldyLk~LGVtaIwL~Pi~~~~~~~~~~~~~~~~GYd~~d~~~  733 (1039)
T 3klk_A          654 AYRSNAALDSNVIYEGFSNFIYWPTTESERTNVRIAQNADLFKSWGITTFELAPQYNSSKDGTFLDSIIDNGYAFTDRYD  733 (1039)
T ss_dssp             SCCCSHHHHTCCEEECCCTTBCCCSSGGGCHHHHHHHTHHHHHHTTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTC
T ss_pred             cccCCcccCCcEEEccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECccccCCcccccccCcCCCCCCcccccc
Confidence            35567788999999944221111222335899999999999999999999999999985        3689999999984


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953         93 ----VDPLFGDMHDFEILIEEAHSRGKPKRT---FREVT  124 (136)
Q Consensus        93 ----vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~  124 (136)
                          ++|+||+.+||++||++||++||+||+   +||++
T Consensus       734 ~~~~i~~~~Gt~~efk~lV~alH~~GI~VIlDvV~NHta  772 (1039)
T 3klk_A          734 LGMSTPNKYGSDEDLRNALQALHKAGLQAIADWVPDQIY  772 (1039)
T ss_dssp             SSCSSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred             cccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccCCcC
Confidence                789999999999999999999999999   99986

>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular transglucosylation, isomerase; HET: MLZ MLY; 1.90A {Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1

Probab=99.85  E-value=2.9e-22  Score=171.95  Aligned_cols=80  Identities=25%  Similarity=0.400  Sum_probs=75.0

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVT  124 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~  124 (136)
                      +|+|++++++|+||++||||+|||+||+++. ..+|||++.||++|||+||+.+||++||++||++||+||+   +||++
T Consensus        13 gGtf~gi~~~LdYLk~LGVtaIwLsPi~~~~~gs~hGYdv~Dy~~Idp~lGt~edfk~LV~aaH~~GIkVIlDvV~NHta   92 (720)
T 1iv8_A           13 NFNFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMA   92 (720)
T ss_dssp             TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEE
T ss_pred             CCCHHHHHHHHHHHHhCCCCEEEECCcccCCCCCCCCCCCccCCCcCccCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence            4899999999999999999999999999974 4789999999999999999999999999999999999999   99999


Q ss_pred             --CccC
Q psy12953        125 --KSFA  128 (136)
Q Consensus       125 --~~~~  128 (136)
                        .+|+
T Consensus        93 ~~~~~~   98 (720)
T 1iv8_A           93 VNSLNW   98 (720)
T ss_dssp             CCTTCH
T ss_pred             CccccH
Confidence              5553

>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A*

Probab=99.82  E-value=3.2e-21  Score=159.55  Aligned_cols=86  Identities=23%  Similarity=0.412  Sum_probs=76.2

Q ss_pred             EecccccCcCCCCCCCHHHHHHhHH-HHHHcCCcEEEEcCCc-cCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHC
Q psy12953         36 IYPRSFRDVNGDGTGDMRGITEKLD-HFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR  113 (136)
Q Consensus        36 v~~~~f~~~~~~~~g~~~~l~~~l~-~l~~lG~~~I~l~Pi~-~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~  113 (136)
                      |++.+|.+++.  +|++++++++|+ ||++| ||+|||+||+ +++..++||++.||++|||+|||.+||++||+     
T Consensus         5 i~~~sf~d~~~--gg~~~~i~~~ld~yL~~L-v~~IwL~Pi~~~~~~~~~GY~~~dy~~idp~~Gt~~df~~Lv~-----   76 (504)
T 1r7a_A            5 VQLITYADRLG--DGTIKSMTDILRTRFDGV-YDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAELSK-----   76 (504)
T ss_dssp             CEEEECSSSBS--SSSHHHHHHHHHHHSTTT-CCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHHHT-----
T ss_pred             EeeeeeEeccC--CCCHHHHHHHHHHHHHHH-hCeEEECCcccCCCCCCCCCCccChhhcCcccCCHHHHHHHHh-----
Confidence            44556655541  389999999998 99999 9999999999 88877899999999999999999999999996     


Q ss_pred             CCcEEE---eccCCCccCC
Q psy12953        114 GKPKRT---FREVTKSFAN  129 (136)
Q Consensus       114 Gi~vil---~nh~~~~~~~  129 (136)
                      ||+||+   +||++.+|++
T Consensus        77 Gi~VilD~V~NH~s~~~~~   95 (504)
T 1r7a_A           77 THNIMVDAIVNHMSWESKQ   95 (504)
T ss_dssp             TSEEEEEEECSEEETTSHH
T ss_pred             CCEEEEEECCCcCCCcchH
Confidence            999999   9999988864

>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*

Probab=99.82  E-value=3.2e-20  Score=163.54  Aligned_cols=96  Identities=20%  Similarity=0.289  Sum_probs=78.9

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCC--------CCCCCccCCCC----CCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA--------DLGYDVSNYVD----VDPL   96 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~--------~~gY~~~d~~~----vd~~   96 (136)
                      .+.+|||-+...-....+.-..+|++++++|+||++||||+|||+||++++..        ++||++.|++.    ++|+
T Consensus       829 ds~Vi~QgF~W~~~~~g~~w~~Ty~~I~~kLdYLk~LGITaIwL~Pi~~s~~~~~~~~~~~d~GYdi~D~y~lGf~i~~~  908 (1108)
T 3ttq_A          829 DSNLIYEGFSNFQPKATTHDELTNVVIAKNADVFNNWGITSFEMAPQYRSSGDHTFLDSTIDNGYAFTDRYDLGFNTPTK  908 (1108)
T ss_dssp             HTCCEEECCCTTCCCCSSGGGSHHHHHHHTHHHHHHHTCCEEECCCCSCBCCCCSSGGGTTTCSSSBSCTTCSSSSSCCS
T ss_pred             CCceEEEeEECCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEECCCccCCCccccccccccCCcccccccccCcCCCCC
Confidence            35799995433211111111245569999999999999999999999998764        89999999988    7999


Q ss_pred             CCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953         97 FGDMHDFEILIEEAHSRGKPKRT---FREVT  124 (136)
Q Consensus        97 ~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~  124 (136)
                      ||+.+||++||++||++||+||+   +||++
T Consensus       909 yGt~edfk~LV~alH~~GI~VIlDvV~NHta  939 (1108)
T 3ttq_A          909 YGTDGDLRATIQALHHANMQVMADVVDNQVY  939 (1108)
T ss_dssp             SCCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence            99999999999999999999999   99986

>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...

Probab=99.81  E-value=2.2e-20  Score=151.53  Aligned_cols=90  Identities=9%  Similarity=0.118  Sum_probs=76.5

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-----C--CCCCCccCCCCCCCCCCCH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-----A--DLGYDVSNYVDVDPLFGDM  100 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-----~--~~gY~~~d~~~vd~~~Gt~  100 (136)
                      .+.+|.|++-..           |+++++.+ +||++||||+|||+|+.++..     .  .+||++.|| +|+|+|||+
T Consensus         9 g~~~i~~~f~W~-----------w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy-~i~~~~Gt~   76 (496)
T 4gqr_A            9 GRTSIVHLFEWR-----------WVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSY-KLCTRSGNE   76 (496)
T ss_dssp             TCCEEEEETTCC-----------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS-CSCBTTBCH
T ss_pred             CCcEEEEecCCC-----------HHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCc-eeCCCCCCH
Confidence            356888876553           67998776 799999999999999999732     1  249999996 799999999


Q ss_pred             HHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953        101 HDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       101 ~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      +||++||++||++||+||+   +||++.+|+..
T Consensus        77 ~df~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~  109 (496)
T 4gqr_A           77 DEFRNMVTRCNNVGVRIYVDAVINHMCGNAVSA  109 (496)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSEEEETTSCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEEccCcCCCccccc
Confidence            9999999999999999999   99998877654

>3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (M family 13 glycoside hydrolases; 1.90A {Sulfolobus tokodaii str}

Probab=99.80  E-value=7.1e-21  Score=162.19  Aligned_cols=76  Identities=30%  Similarity=0.537  Sum_probs=73.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      |+|+++.++|+||++|||++|||+||+++. ..++||++.||+.+||+||+.+||++||++||++||+||+   +||++.
T Consensus        12 Gtf~~i~~~LdyL~~LGvt~V~LsPi~e~~~~s~~GYd~~Dy~~vdp~lGt~edfk~LV~~aH~~GI~VilDvV~NH~s~   91 (704)
T 3hje_A           12 MKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMAV   91 (704)
T ss_dssp             CCHHHHHTTHHHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGGGTHHHHHHHHHHHHHHHTCEEEEEECCSEEEC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCccCCCCCCCCCCCcCCCCcCccCCCHHHHHHHHHHHHHCCCEEEEeeccccccc
Confidence            899999999999999999999999999984 4689999999999999999999999999999999999999   999986

>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*

Probab=96.80  E-value=0.0031  Score=48.45  Aligned_cols=72  Identities=6%  Similarity=0.079  Sum_probs=45.3

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccC---CCCCCC-CCccC--CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPA---GGADLG-YDVSN--YVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~---~~~~~g-Y~~~d--~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      +-..+.+.++.+|++|+|+|.+....+.   +..+.. +++.+  ...+|..-...+.|.++++.|+++||+||+..|
T Consensus        34 ~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~Gi~vild~~  111 (344)
T 1qnr_A           34 NHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFV  111 (344)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECCCCCEESSCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEESC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEccccCCCCCCCCCceeeeecCCCCcccccCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence            5677888999999999999999422211   111000 00000  001111123478999999999999999999555

>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*

Probab=96.74  E-value=0.0036  Score=51.25  Aligned_cols=70  Identities=14%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCC-CCCCCCC---CCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNY-VDVDPLF---GDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~-~~vd~~~---Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      +.+.+.++.++++|+|+|-+. +.-..-...+ .+... +..+|.+   ...+.++++|+.|+++||+||++.|..
T Consensus        84 ~~~~~~i~~ik~~G~N~VRip-i~~~~l~~~~-~p~~~~~~~np~~~~~~~l~~ld~vV~~a~~~Gi~VIldlH~~  157 (458)
T 3qho_A           84 RNWEDMLLQIKSLGFNAIRLP-FCTESVKPGT-QPIGIDYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI  157 (458)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEE-EETGGGSTTC-CCCCCCTTTCGGGTTCCHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CCHHHHHHHHHHcCCCEEEEe-eeHHHhCCCC-CccccccccCccccchHHHHHHHHHHHHHHHCCCEEEEecccC
Confidence            346778899999999999995 2211000000 01111 2345644   347899999999999999999966643

>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A

Probab=96.61  E-value=0.0059  Score=47.34  Aligned_cols=68  Identities=12%  Similarity=0.118  Sum_probs=45.4

Q ss_pred             HHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCC---CHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         55 ITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFG---DMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        55 l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~G---t~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      +.+.++.++++|+|+|-+. +.-.. ..+..-...|+...+|.+.   ..+.++++|+.|.++||+||+..|.
T Consensus        46 ~~~~~~~~~~~G~n~vRi~-~~~~~~~~~~~~~~~~~~~~np~~~g~~~~~~ld~~v~~a~~~Gi~vild~h~  117 (358)
T 1ece_A           46 YRSMLDQIKSLGYNTIRLP-YSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHR  117 (358)
T ss_dssp             HHHHHHHHHHTTCCEEEEE-EEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEee-ccHHHhcCCCCCccccccccCccccCccHHHHHHHHHHHHHHCCCEEEEecCC
Confidence            5777899999999999986 32110 0000001233333566543   4788999999999999999995553

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.52  E-value=0.0065  Score=47.94  Aligned_cols=62  Identities=6%  Similarity=-0.134  Sum_probs=43.6

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC---CHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG---DMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G---t~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      +..+.|+.|+++|+|+|-|.+.........+       .+.-.+|   +.+++++++++|+++||+|++.-|
T Consensus        54 ~~~~~l~~lk~~g~N~VrL~v~~~~~~~~~~-------~~~~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p~  118 (343)
T 3civ_A           54 EARASMRALAEQPFNWVTLAFAGLMEHPGDP-------AIAYGPPVTVSDDEIASMAELAHALGLKVCLKPT  118 (343)
T ss_dssp             HHHHHHHHHHHSSCSEEEEEEEEEESSTTCC-------CCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hHHHHHHHHHHcCCCEEEEEeeecCCCCCCC-------cccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
Confidence            4567799999999999999875433211110       0011233   689999999999999999999333

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*

Probab=96.42  E-value=0.0096  Score=46.62  Aligned_cols=55  Identities=5%  Similarity=-0.026  Sum_probs=41.0

Q ss_pred             hHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCcc
Q psy12953         58 KLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSF  127 (136)
Q Consensus        58 ~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~  127 (136)
                      -+.-|+++|+|+|-+. ++-.|.              +.+-+.+.+.++++.|+++||+|++.-|.+-..
T Consensus        32 ~~~ilk~~G~N~VRi~-~w~~P~--------------~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~W   86 (332)
T 1hjs_A           32 LENILAANGVNTVRQR-VWVNPA--------------DGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDTW   86 (332)
T ss_dssp             HHHHHHHTTCCEEEEE-ECSSCT--------------TCTTSHHHHHHHHHHHHHTTCEEEEEECCSSSC
T ss_pred             HHHHHHHCCCCEEEEe-eeeCCC--------------CCcCCHHHHHHHHHHHHHCCCEEEEEeccCCCc
Confidence            3567899999999985 331111              234467899999999999999999966876443

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A

Probab=96.28  E-value=0.0088  Score=48.11  Aligned_cols=59  Identities=19%  Similarity=0.115  Sum_probs=40.3

Q ss_pred             HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCC-CCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLF-GDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~-Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      +-++.|+++|+|+|-|+=-+..-...         .-+|.. |..+.|+++|+.|+++||+||++.|..
T Consensus        77 ~D~~~ik~~G~N~VRipi~~~~~~~~---------~~~py~~~~~~~ld~vV~~a~~~Gl~VILDlH~~  136 (399)
T 3n9k_A           77 QDFKQISNLGLNFVRIPIGYWAFQLL---------DNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGA  136 (399)
T ss_dssp             HHHHHHHHTTCCEEEEEEEGGGTCCC---------TTCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHHHHHHcCCCEEEEcccHHHccCC---------CCCccchhHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            44778999999999984322111000         001111 467899999999999999999976743

>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A

Probab=96.27  E-value=0.01  Score=44.98  Aligned_cols=55  Identities=11%  Similarity=0.103  Sum_probs=41.4

Q ss_pred             HHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         55 ITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        55 l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ..+.++.++++|+|+|-+ |+...    ..|..          ...+.++++|+.|.++||+||+..|..
T Consensus        33 ~~~~~~~i~~~G~N~VRi-~~~~~----~~~~~----------~~~~~ld~~v~~a~~~Gi~Vild~H~~   87 (294)
T 2whl_A           33 ASTAIPAIAEQGANTIRI-VLSDG----GQWEK----------DDIDTIREVIELAEQNKMVAVVEVHDA   87 (294)
T ss_dssp             HHHHHHHHHHTTCSEEEE-EECCS----SSSCC----------CCHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred             hHHHHHHHHHcCCCEEEE-EecCC----CccCc----------cHHHHHHHHHHHHHHCCCEEEEEeccC
Confidence            446688999999999999 55421    01111          257899999999999999999966643

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*

Probab=96.08  E-value=0.027  Score=45.37  Aligned_cols=64  Identities=11%  Similarity=0.099  Sum_probs=43.4

Q ss_pred             HhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953         57 EKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN  129 (136)
Q Consensus        57 ~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~  129 (136)
                      +.+..|+++|+|+|-|.. +-.+.  .+.+|..        -..+.+.+.++++.|+++||+|++.-|.+-..++
T Consensus        52 d~~~ilk~~G~N~VRlrv-wv~p~~~~g~~y~~--------g~~d~~~~~~~a~~Ak~~GLkVlldfHysD~Wad  117 (399)
T 1ur4_A           52 DIFKTLKEAGVNYVRVRI-WNDPYDANGNGYGG--------GNNDLEKAIQIGKRATANGMKLLADFHYSDFWAD  117 (399)
T ss_dssp             CHHHHHHHTTCCEEEEEE-CSCCBCTTCCBCST--------TCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCS
T ss_pred             hHHHHHHHCCCCEEEEee-ecCCcccccCccCC--------CCCCHHHHHHHHHHHHHCCCEEEEEeccCCccCC
Confidence            347789999999999843 32222  1112211        1135789999999999999999996687654433

>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*

Probab=95.99  E-value=0.015  Score=44.20  Aligned_cols=53  Identities=8%  Similarity=-0.007  Sum_probs=39.3

Q ss_pred             HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      +.++.+|++|+|+|-+ |+....    .|..      +    ..+.++++|+.|.++||+||+..|..
T Consensus        36 ~~~~~lk~~G~N~VRi-~~~~~~----~w~~------~----~~~~ld~~v~~a~~~Gi~Vild~h~~   88 (302)
T 1bqc_A           36 QAFADIKSHGANTVRV-VLSNGV----RWSK------N----GPSDVANVISLCKQNRLICMLEVHDT   88 (302)
T ss_dssp             THHHHHHHTTCSEEEE-EECCSS----SSCC------C----CHHHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred             HHHHHHHHcCCCEEEE-EccCCc----ccCC------C----CHHHHHHHHHHHHHCCCEEEEEeccC
Confidence            5678899999999999 443210    1111      1    36889999999999999999966643

>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}

Probab=95.91  E-value=0.017  Score=43.04  Aligned_cols=67  Identities=13%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCC-CCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNY-VDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~-~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ...+.+.|+.+|++|+|+|-+. ++........+..... ...+..-.-.+.+.++++.|.++||+||+
T Consensus        41 ~~~~~~~l~~~k~~G~N~vRv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vil  108 (351)
T 3vup_A           41 KNRIEPEFKKLHDAGGNSMRLW-IHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFP  108 (351)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEE-EEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCcEEEEC-cccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCeEEE
Confidence            3456777999999999999872 1111100000000000 00111112357899999999999999999

>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3

Probab=95.90  E-value=0.016  Score=46.55  Aligned_cols=59  Identities=15%  Similarity=0.040  Sum_probs=40.2

Q ss_pred             HHhHHHHHHcCCcEEEEcCCc-cCCCCCCCCCccCCCCCCC-CCC-CHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDP-LFG-DMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~-~~~~~~~gY~~~d~~~vd~-~~G-t~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+.++.|+++|+|+|-| |+. ..-....|         +| ..| ..+.|+++|+.|+++||+||++.|..
T Consensus        76 e~d~~~i~~~G~N~VRi-pi~~~~~~~~~~---------~py~~~~~l~~ld~vv~~a~~~Gi~VilDlH~~  137 (408)
T 1h4p_A           76 EQDFANIASQGFNLVRI-PIGYWAFQILDD---------DPYVSGLQESYLDQAIGWARNNSLKVWVDLHGA  137 (408)
T ss_dssp             HHHHHHHHHTTCCEEEE-EEEGGGTCCCTT---------CCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHHHHHHHCCCCEEEc-cCCHHHcccCCC---------CCCccccHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence            34577999999999999 332 11000000         11 014 57889999999999999999966753

>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A

Probab=95.89  E-value=0.011  Score=45.90  Aligned_cols=57  Identities=23%  Similarity=0.251  Sum_probs=41.0

Q ss_pred             HhHHHH-HHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953         57 EKLDHF-VDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK  125 (136)
Q Consensus        57 ~~l~~l-~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~  125 (136)
                      +.++.| +++|+|+|-+ |++..   ..||      ..||.  ..+.++++|+.|.++||.||++.|...
T Consensus        72 ~~~~~l~~~~G~N~VRi-~~~~~---~~~~------~~~~~--~~~~ld~~v~~a~~~Gi~VilD~H~~~  129 (327)
T 3pzt_A           72 DSLKWLRDDWGITVFRA-AMYTA---DGGY------IDNPS--VKNKVKEAVEAAKELGIYVIIDWHILN  129 (327)
T ss_dssp             HHHHHHHHHTCCSEEEE-EEESS---TTST------TTCGG--GHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred             HHHHHHHHhcCCCEEEE-EeEEC---CCCc------ccCHH--HHHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            346778 6899999999 44432   1232      22443  378999999999999999999767543

>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*

Probab=95.87  E-value=0.014  Score=44.71  Aligned_cols=59  Identities=12%  Similarity=0.062  Sum_probs=39.5

Q ss_pred             HHhHHHHHHcCCcEEEEcCCc-cCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         56 TEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~-~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      .+-++.++++|+++|-+. +. ..-..     ..+-+.+|+.  ..+.++++|+.|+++||+||+.-|
T Consensus        44 ~~d~~~l~~~G~n~vRi~-i~w~~~~~-----~~~~~~~~~~--~~~~~d~~v~~a~~~Gi~vildlh  103 (320)
T 3nco_A           44 DEYFKIIKERGFDSVRIP-IRWSAHIS-----EKYPYEIDKF--FLDRVKHVVDVALKNDLVVIINCH  103 (320)
T ss_dssp             HHHHHHHHHHTCCEEEEC-CCGGGSBC-----SSTTCCBCHH--HHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHCCCCEEEEe-eehHHhcC-----CCCCCccCHH--HHHHHHHHHHHHHHCCCEEEEEcC
Confidence            566889999999999994 32 11000     0011123332  167899999999999999999444

>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}

Probab=95.77  E-value=0.024  Score=44.63  Aligned_cols=54  Identities=11%  Similarity=0.111  Sum_probs=41.0

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+.++.|+++|+|+|-+ |+...    ..|        ++  ...+.++++|+.|.++||.||++.|..
T Consensus        57 ~~~i~~lk~~G~N~VRi-p~~~~----~~~--------~~--~~l~~ld~~v~~a~~~GiyVIlDlH~~  110 (345)
T 3jug_A           57 STAIPAIAEQGANTIRI-VLSDG----GQW--------EK--DDIDTVREVIELAEQNKMVAVVEVHDA  110 (345)
T ss_dssp             HHHHHHHHHTTCSEEEE-EECCS----SSS--------CC--CCHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred             HHHHHHHHHcCCCEEEE-EecCC----Ccc--------CH--HHHHHHHHHHHHHHHCCCEEEEEeccC
Confidence            45788999999999999 44321    111        11  248899999999999999999966654

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A

Probab=95.70  E-value=0.032  Score=43.60  Aligned_cols=55  Identities=13%  Similarity=0.036  Sum_probs=39.3

Q ss_pred             hHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCcc
Q psy12953         58 KLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSF  127 (136)
Q Consensus        58 ~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~  127 (136)
                      -+.-++++|+|+|-+.. +-.|.              +.+-+.+.+++++++|+++||+|++.-|.+..+
T Consensus        32 ~~~ilk~~G~n~vRlri-~v~P~--------------~g~~d~~~~~~~~~~ak~~Gl~v~ld~hysd~w   86 (334)
T 1fob_A           32 LETILADAGINSIRQRV-WVNPS--------------DGSYDLDYNLELAKRVKAAGMSLYLDLHLSDTW   86 (334)
T ss_dssp             HHHHHHHHTCCEEEEEE-CSCCT--------------TCTTCHHHHHHHHHHHHHTTCEEEEEECCSSSC
T ss_pred             HHHHHHHcCCCEEEEEE-EECCC--------------CCccCHHHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence            46789999999999833 21111              123347899999999999999999944554333

>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3

Probab=95.57  E-value=0.0096  Score=46.90  Aligned_cols=61  Identities=7%  Similarity=0.013  Sum_probs=40.5

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+.++.|+++|+++|-|.--+..-.....      ..+|+.  ..+.++++|+.|.++||+||++.|..
T Consensus        64 ~~di~~i~~~G~n~vRipv~w~~~~~~~~------~~~~~~--~l~~l~~~v~~a~~~Gi~vild~H~~  124 (380)
T 1edg_A           64 KQMIDAIKQKGFNTVRIPVSWHPHVSGSD------YKISDV--WMNRVQEVVNYCIDNKMYVILNTHHD  124 (380)
T ss_dssp             HHHHHHHHHHTCCEEEECCCCGGGEETTT------TEECHH--HHHHHHHHHHHHHTTTCEEEEECCSC
T ss_pred             HHHHHHHHHcCCCEEEecccHHhhcCCCC------CcCCHH--HHHHHHHHHHHHHHCCCEEEEeCCCc
Confidence            55688999999999999532221100000      012221  25789999999999999999966654

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A

Probab=95.51  E-value=0.013  Score=45.12  Aligned_cols=61  Identities=10%  Similarity=0.049  Sum_probs=40.0

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      .+.++.++++|+|+|-|.--+..-....+  +   ..++  -+..+.++++|+.|+++||+||+..|.
T Consensus        31 ~~d~~~i~~~G~n~vRi~i~~~~~~~~~~--~---g~~~--~~~~~~l~~~v~~a~~~Gi~vildlh~   91 (343)
T 1ceo_A           31 EKDIETIAEAGFDHVRLPFDYPIIESDDN--V---GEYK--EDGLSYIDRCLEWCKKYNLGLVLDMHH   91 (343)
T ss_dssp             HHHHHHHHHHTCCEEEEEEEGGGTBCSSS--T---TCBC--HHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEecCCHHHhccccC--C---Cccc--HHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            45688999999999998533221110000  0   0111  123678999999999999999995554

>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*

Probab=95.50  E-value=0.018  Score=47.80  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=52.2

Q ss_pred             CCCCCHHHHH-HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         47 DGTGDMRGIT-EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        47 ~~~g~~~~l~-~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      -|.|||.+.. +.++.+++.|.+.+.++|+.+....+++|.+.+=+..||-|=+.+++.+
T Consensus        20 ~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~~~~SPY~~~S~fa~NplyI~l~~l~e   79 (500)
T 1esw_A           20 YGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAE   79 (500)
T ss_dssp             SSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCGGGCCSHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcCHHhhhh
Confidence            5679999876 8899999999999999999988777789999999999999988877654

>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3

Probab=95.39  E-value=0.024  Score=43.76  Aligned_cols=61  Identities=8%  Similarity=-0.146  Sum_probs=40.3

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      .+.++.++++|+|+|-+.--+..-..+.     +...++  -+..+.++++|+.|+++||+||+..|.
T Consensus        39 ~~d~~~i~~~G~n~vRi~i~~~~~~~~~-----~p~~~~--~~~~~~ld~~v~~a~~~Gi~vildlh~   99 (341)
T 1vjz_A           39 EEDFLWMAQWDFNFVRIPMCHLLWSDRG-----NPFIIR--EDFFEKIDRVIFWGEKYGIHICISLHR   99 (341)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEGGGTSCSS-----CTTCCC--GGGHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEeeCCHHHhcCCC-----CCCcCC--HHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            4567899999999999853221110000     011122  235788999999999999999994443

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3

Probab=95.32  E-value=0.036  Score=45.17  Aligned_cols=55  Identities=13%  Similarity=0.100  Sum_probs=41.3

Q ss_pred             HHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         55 ITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        55 l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ..+.++.|+++|+|+|-+ |+...    ..|.        +  ...+.++++|+.|.++||+||+..|..
T Consensus        41 ~~~di~~ik~~G~N~VRi-pv~~g----~~~~--------~--~~l~~ld~vv~~a~~~Gl~VIlDlH~~   95 (464)
T 1wky_A           41 ATTAIEGIANTGANTVRI-VLSDG----GQWT--------K--DDIQTVRNLISLAEDNNLVAVLEVHDA   95 (464)
T ss_dssp             HHHHHHHHHTTTCSEEEE-EECCS----SSSC--------C--CCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             hHHHHHHHHHCCCCEEEE-EcCCC----CccC--------H--HHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            446788999999999999 44311    0111        1  357899999999999999999976754

>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme, amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP: c.1.8.1

Probab=95.23  E-value=0.028  Score=46.87  Aligned_cols=60  Identities=18%  Similarity=0.199  Sum_probs=52.8

Q ss_pred             CCCCCCHHHHH-HhHHHHHHcCCcEEEEcCCccCC----CCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         46 GDGTGDMRGIT-EKLDHFVDLGIESLWIQPFYPAG----GADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        46 ~~~~g~~~~l~-~~l~~l~~lG~~~I~l~Pi~~~~----~~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .-|.|||.+.. +.++.+++.|.+.+.++|+.+..    ..+++|.+.+=+..||-|=+.+++.+
T Consensus        40 ~~GIGdfgd~a~~fvd~la~~G~~~~qilPL~~t~~~~p~~~SPY~~~S~fa~NplyI~l~~l~e  104 (524)
T 1x1n_A           40 PYGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGNTLLISLEELVD  104 (524)
T ss_dssp             TTSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCCGGGSCHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCCEEeecCCCCCCCCCCCCCCCcCcccccccChhhcCHHhhhh
Confidence            35689999976 88999999999999999999986    56789999999999999999887764

>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A*

Probab=95.22  E-value=0.028  Score=42.71  Aligned_cols=59  Identities=17%  Similarity=0.117  Sum_probs=39.6

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      .+.++.++++|+++|-+.--+..-. ...+|      .+|+  ...+.++++|+.|.++||+|++..|
T Consensus        36 ~~d~~~l~~~G~n~vR~~i~w~~~~~~~~~~------~~~~--~~~~~~d~~v~~a~~~Gi~vild~h   95 (317)
T 3aof_A           36 DEFFDIIKEAGFSHVRIPIRWSTHAYAFPPY------KIMD--RFFKRVDEVINGALKRGLAVVINIH   95 (317)
T ss_dssp             THHHHHHHHHTCSEEEECCCGGGGBCSSTTC------CBCH--HHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHcCCCEEEEeccHHHhcCCCCCC------cCCH--HHHHHHHHHHHHHHHCCCEEEEEec
Confidence            4567899999999999963222110 01111      2232  1357799999999999999999555

>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*

Probab=95.20  E-value=0.12  Score=41.47  Aligned_cols=65  Identities=17%  Similarity=0.263  Sum_probs=42.7

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC-----HHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD-----MHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt-----~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-..+.+.++.+|++|+|+|-+. .++..   .++...-+..+.+.-|.     .+.|.++++.|.++||+||+
T Consensus        60 ~~~~~~~dl~~~k~~G~N~vR~~-~~d~~---~~~~~~~~~~~~~~~g~~~e~~~~~lD~~l~~a~~~Gi~vil  129 (440)
T 1uuq_A           60 DRDRLAKELDNLKAIGVNNLRVL-AVSEK---SEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVL  129 (440)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEE-CCCBC---CCSTTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEC-cccCC---CCCcccccccccCCCCccCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            56778888999999999999997 22110   01100001122222232     46688999999999999999

>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1

Probab=95.19  E-value=0.022  Score=47.29  Aligned_cols=60  Identities=17%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             CCCCCCHHHHH-HhHHHHHHcCCcEEEEcCCccCC--CCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         46 GDGTGDMRGIT-EKLDHFVDLGIESLWIQPFYPAG--GADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        46 ~~~~g~~~~l~-~~l~~l~~lG~~~I~l~Pi~~~~--~~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .-|.|||.+.. +.++.+++.|.+.+.++|+.+..  ..+++|.+.+=+..||-|=+.+++.+
T Consensus        36 ~~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~p~~~~SPY~~~S~fa~NplyI~l~~l~e   98 (505)
T 1tz7_A           36 PYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDPEELLE   98 (505)
T ss_dssp             SSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCCGGGSCTHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCcCcccccccchhhcCHhhhhh
Confidence            35679999876 88999999999999999999876  56789999999999999998887665

>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*

Probab=95.17  E-value=0.03  Score=43.77  Aligned_cols=62  Identities=10%  Similarity=0.030  Sum_probs=40.6

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+.++.++++|+++|-|+=-+..-...     ..-..+|+.  ..+.++++|+.|+++||+||+.-|-.
T Consensus        45 ~~di~~i~~~G~n~vRipi~w~~~~~~-----~~~~~~~~~--~l~~l~~~v~~a~~~Gi~vildlH~~  106 (345)
T 3ndz_A           45 HAMINKIKEAGFNTLRLPVTWDGHMGA-----APEYTIDQT--WMKRVEEIANYAFDNDMYVIINLHHE  106 (345)
T ss_dssp             HHHHHHHHHHTCCEEEECCCCTTSBCC-----TTTCCBCHH--HHHHHHHHHHHHHTTTCEEEECCCSC
T ss_pred             HHHHHHHHHCCCCEEEEeeehHHhCCC-----CCCCccCHH--HHHHHHHHHHHHHHCCCEEEEecCCc
Confidence            566889999999999994322211000     001123322  26789999999999999999954443

>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}

Probab=95.13  E-value=0.014  Score=45.98  Aligned_cols=66  Identities=14%  Similarity=0.088  Sum_probs=44.4

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCC-CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGA-DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~-~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ..++..+.++.++++|+++|-|+=-++.-.. ..+      ..+|+.  ..+.++++|+.|.++||+||++.|..
T Consensus        41 ~~~~t~~m~~~i~~~G~N~vRipi~w~~~~~~~~~------g~~~~~--~l~~ld~vV~~a~~~Gi~vIlDlH~~  107 (340)
T 3qr3_A           41 YPDGIGQMQHFVNEDGMTIFRLPVGWQYLVNNNLG------GNLDST--SISKYDQLVQGCLSLGAYCIVDIHNY  107 (340)
T ss_dssp             SCCHHHHHHHHHHHHCCCEEEEEECHHHHTTTCTT------CCCCHH--HHHHHHHHHHHHHHTTCEEEEEECST
T ss_pred             CCccHHHHHHHHHHCCCCEEEEEeeHHHhCCCCCC------CccCHH--HHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            3456777788999999999999422221000 001      123332  26789999999999999999966643

>3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural GEN joint center for structural genomics, JCSG; HET: MSE; 1.85A {Parabacteroides distasonis atcc 8503}

Probab=95.12  E-value=0.043  Score=43.28  Aligned_cols=69  Identities=7%  Similarity=0.120  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHhHHHHHHcCCcEEEEcCC----ccCCCCCC----CCCccCCCCCCCCCC----CHHHHHHHHHHHHHCCC
Q psy12953         48 GTGDMRGITEKLDHFVDLGIESLWIQPF----YPAGGADL----GYDVSNYVDVDPLFG----DMHDFEILIEEAHSRGK  115 (136)
Q Consensus        48 ~~g~~~~l~~~l~~l~~lG~~~I~l~Pi----~~~~~~~~----gY~~~d~~~vd~~~G----t~~~~~~lv~~ah~~Gi  115 (136)
                      .++.|.++...++.+++.|+|+|-|-|.    +..+..-+    -|...+.   |..=|    ....|.+|.++|+++|+
T Consensus        32 PGepf~DLD~afdEavERGYNTVRIcAmP~LLf~~p~~l~~l~pl~gQrrW---~~pg~~evdgr~~L~elf~aAk~hd~  108 (393)
T 3gyc_A           32 PGAGYEDWDQVLDELSERGYNAIRIDAYPHLIAENPMKKWLLKEVWNQQDW---GSPDMNEVQVQPNLNLFLSKCKERDI  108 (393)
T ss_dssp             TTSSCSCHHHHHHHHHHTTCCEEEEECCHHHHHHCTTCCEEECCSCSSSSS---SCSSCEEECCTTHHHHHHHHHHHTTC
T ss_pred             CCCChhHHHHHHHHHHHcCCCeEEeccccceeecCCcchhhcccccccccc---CCCCCceechHHHHHHHHHHHHHcCC
Confidence            3588999999999999999999998542    33322110    0111122   11111    23689999999999999


Q ss_pred             cEEE
Q psy12953        116 PKRT  119 (136)
Q Consensus       116 ~vil  119 (136)
                      +|++
T Consensus       109 ~ViL  112 (393)
T 3gyc_A          109 KVGL  112 (393)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}

Probab=95.07  E-value=0.3  Score=41.69  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=48.5

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+..++-+|..+++|+..|.+--=++..      .-.|+..++|.+    ++++|++-||++|+++++
T Consensus       305 g~n~~~~k~yIDfAa~~G~~yvlvD~gW~~~------~~~d~~~~~p~~----di~~l~~Ya~~kgV~i~l  365 (641)
T 3a24_A          305 GVNNPTYKAYIDFASANGIEYVILDEGWAVN------LQADLMQVVKEI----DLKELVDYAASKNVGIIL  365 (641)
T ss_dssp             SSSHHHHHHHHHHHHHTTCCEEEECTTSBCT------TSCCTTCBCTTC----CHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEecccccC------CCCCccccCCcC----CHHHHHHHHHhcCCEEEE
Confidence            4688999999999999999999993333211      112677777774    599999999999999999

>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*

Probab=95.03  E-value=0.032  Score=43.97  Aligned_cols=62  Identities=15%  Similarity=0.149  Sum_probs=40.7

Q ss_pred             HHHhHHHHHHcCCcEEEEcCCccC-CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         55 ITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        55 l~~~l~~l~~lG~~~I~l~Pi~~~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ..+.++.++++|+++|-+.=-+.. .....+|      .+|+  ...+.++++|+.|+++||+||+..|..
T Consensus        71 ~~~d~~~l~~~G~n~vRl~i~w~~~~~~~~~~------~~~~--~~l~~~d~~v~~a~~~Gi~vild~h~~  133 (395)
T 2jep_A           71 TPELIKKVKAAGFKSIRIPVSYLNNIGSAPNY------TINA--AWLNRIQQVVDYAYNEGLYVIINIHGD  133 (395)
T ss_dssp             CHHHHHHHHHTTCCEEEECCCCGGGBCCTTTC------CBCH--HHHHHHHHHHHHHHTTTCEEEECCCGG
T ss_pred             cHHHHHHHHHcCCCEEEEeeeeccccCCCCCC------ccCH--HHHHHHHHHHHHHHHCCCEEEEECCCc
Confidence            455688999999999999543321 0000111      1221  125679999999999999999955543

>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum}

Probab=94.96  E-value=0.03  Score=45.86  Aligned_cols=61  Identities=10%  Similarity=0.134  Sum_probs=41.5

Q ss_pred             HhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         57 EKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        57 ~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      +.++.|+++|+|+|-| |+.-..   .+|...  ...++.+ ..+.++++|+.|.++||+||++.|..
T Consensus        43 ~d~~~i~~~G~N~VRi-pv~~~~---~~~~~~--~~~~~~~-~l~~ld~vv~~a~~~Gl~VIlD~H~~  103 (491)
T 2y8k_A           43 DQIARVKELGFNAVHL-YAECFD---PRYPAP--GSKAPGY-AVNEIDKIVERTRELGLYLVITIGNG  103 (491)
T ss_dssp             HHHGGGGGGTCCEEEE-EEEECC---TTTTST--TCCCTTT-THHHHHHHHHHHHHHTCEEEEEEECT
T ss_pred             HHHHHHHHcCCCEEEE-Cceeec---ccccCC--CccChhH-HHHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4577889999999997 553211   122110  0233333 47899999999999999999966653

>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*

Probab=94.95  E-value=0.084  Score=41.45  Aligned_cols=61  Identities=8%  Similarity=0.031  Sum_probs=39.5

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      .+.++.++++|+++|-|. +.-...    +....-..+|+  ...+.++++|+.|.++||+||+..|.
T Consensus        65 ~~di~~i~~~G~N~vRip-i~w~~~----~~~~~~~~~~~--~~l~~~~~vv~~a~~~Gi~vildlH~  125 (376)
T 3ayr_A           65 EDMFKVLIDNQFNVFRIP-TTWSGH----FGEAPDYKIDE--KWLKRVHEVVDYPYKNGAFVILNLHH  125 (376)
T ss_dssp             HHHHHHHHHTTCCEEEEC-CCCTTS----BCCTTTCCBCH--HHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred             HHHHHHHHHcCCCEEEEe-eEChhh----cCCCCCCccCH--HHHHHHHHHHHHHHHCCCEEEEECCC
Confidence            556889999999999994 321100    00000011221  12577999999999999999996664

>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*

Probab=94.94  E-value=0.033  Score=44.58  Aligned_cols=67  Identities=21%  Similarity=0.277  Sum_probs=42.5

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCC----------CCCCC-CCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAG----------GADLG-YDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~----------~~~~g-Y~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-..+.+.++.++++|+|+|-+.-..+..          ....| |+.-+  .++..--..+.|.++|++|+++||+|++
T Consensus        41 ~~~~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~--~~~~~~~~~~~LD~~i~~A~k~GI~viL  118 (383)
T 3pzg_A           41 SNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPE--GISNAQNGFERLDYTIAKAKELGIKLII  118 (383)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCT--TCSSCEEHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccCCCcccccc--cccchHHHHHHHHHHHHHHHHCCCEEEE
Confidence            34567788999999999999885432110          00011 21000  1111111268899999999999999999

>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}

Probab=94.88  E-value=0.015  Score=30.00  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             CCHHHHHHHHHHHHHCCCcEEE
Q psy12953         98 GDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        98 Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      |+++++++|-++|++.+|+|.+
T Consensus        12 gtpeelkklkeeakkanirvtf   33 (36)
T 2ki0_A           12 GTPEELKKLKEEAKKANIRVTF   33 (36)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCCB
T ss_pred             CCHHHHHHHHHHHHhccEEEEe
Confidence            7899999999999999999854

>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*

Probab=94.87  E-value=0.032  Score=42.17  Aligned_cols=61  Identities=10%  Similarity=0.016  Sum_probs=40.1

Q ss_pred             HHhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+.++.++ ++|+|+|-+. +...+. ..+|.     ..||. +..+.++++|+.|.++||+||+..|..
T Consensus        41 ~~di~~~~~~~G~N~vRi~-~~~~~~-~~~~~-----~~~p~-~~~~~ld~~v~~a~~~Gi~vild~h~~  102 (293)
T 1tvn_A           41 AETVAKAKTEFNATLIRAA-IGHGTS-TGGSL-----NFDWE-GNMSRLDTVVNAAIAEDMYVIIDFHSH  102 (293)
T ss_dssp             HHHHHHHHHHHCCSEEEEE-EECCTT-STTST-----TTCHH-HHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHHHHHHhcCCCEEEEe-ccccCC-CCCcc-----ccChH-HHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            45678899 5999999983 332111 12222     11221 235778999999999999999965643

>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3

Probab=94.82  E-value=0.056  Score=42.01  Aligned_cols=58  Identities=12%  Similarity=0.148  Sum_probs=39.5

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-----CHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-----DMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-----t~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -..+.+.++.+|++|+|+|-+.- +...  .|.       .+.|.-|     ..+.+.++++.|+++||+|++
T Consensus        41 ~~~~~~dl~~~k~~G~N~vR~~~-~~~~--~w~-------~~~~~~g~~~~~~~~~ld~~i~~a~~~Gi~vil  103 (373)
T 1rh9_A           41 RIKVTNTFQQASKYKMNVARTWA-FSHG--GSR-------PLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIM  103 (373)
T ss_dssp             THHHHHHHHHHHHTTCCEEEEES-SCSS--SSS-------CSEEETTEECHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEECe-ecCC--CCc-------cccCCCCccCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            45677789999999999999832 2110  010       1111111     256789999999999999999

>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3

Probab=94.72  E-value=0.043  Score=41.32  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=39.2

Q ss_pred             HHhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         56 TEKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        56 ~~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      .+.++.++ ++|+|+|-+. +....  ..+|.      .+|. +..+.++++|+.|.++||+||+..|.
T Consensus        41 ~~d~~~l~~~~G~N~vR~~-~~~~~--~~~~~------~~~~-~~~~~ld~~v~~a~~~Gi~vild~h~   99 (291)
T 1egz_A           41 ADTVASLKKDWKSSIVRAA-MGVQE--SGGYL------QDPA-GNKAKVERVVDAAIANDMYAIIGWHS   99 (291)
T ss_dssp             HHHHHHHHHTTCCCEEEEE-EECSS--TTSTT------TCHH-HHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEe-ccccc--cCCCc------CCHH-HHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence            45678899 8999999983 33211  11221      1221 23567899999999999999995554

>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3

Probab=94.59  E-value=0.056  Score=41.44  Aligned_cols=61  Identities=13%  Similarity=0.121  Sum_probs=40.7

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccC---CC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPA---GG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~---~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ..+.+.++.+|++|+|+|-+.-.++.   +. ...|+    ....|+  ...+.+.++++.|+++||+||+
T Consensus        45 ~~~~~d~~~~k~~G~N~vR~~~~~~~~~~p~~~~~g~----~~~~~~--~~~~~ld~~~~~a~~~Gi~vil  109 (353)
T 2c0h_A           45 STFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGY----VTGIDN--TLISDMRAYLHAAQRHNILIFF  109 (353)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSC----EEECCT--THHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEceecCCccCccccCCCc----cccCCH--HHHHHHHHHHHHHHHcCCEEEE
Confidence            44666799999999999988422221   00 01111    112232  4467899999999999999999

>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*

Probab=94.55  E-value=0.062  Score=42.06  Aligned_cols=55  Identities=18%  Similarity=0.122  Sum_probs=39.9

Q ss_pred             HhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         57 EKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        57 ~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      +.++.|+ ++|+|+|-+. +.- +  ..|      +.+||.+  .+.++++|+.|.++||+||++.|.
T Consensus        57 ~d~~~l~~~~G~N~VRip-~~~-~--~~~------~~~~~~~--l~~ld~~v~~a~~~Gi~VIld~H~  112 (364)
T 1g01_A           57 NAFVALSNDWGSNMIRLA-MYI-G--ENG------YATNPEV--KDLVYEGIELAFEHDMYVIVDWHV  112 (364)
T ss_dssp             HHHHHHHTTSCCSEEEEE-EES-S--SSS------TTTCTTH--HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHCCCCEEEEE-eee-C--CCC------CccCHHH--HHHHHHHHHHHHHCCCEEEEEecc
Confidence            4577886 9999999984 321 1  112      2345543  688999999999999999996665

>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*

Probab=94.39  E-value=0.024  Score=46.16  Aligned_cols=60  Identities=15%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             HHHhH-HHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         55 ITEKL-DHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        55 l~~~l-~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      ..+.+ +.++++|+|+|-+.--+..-....|  .     .|  ....+.++++|+.|+++||+||+..|.
T Consensus        67 ~~~di~~~l~~~G~N~VRl~v~w~~~~p~~g--~-----~~--~~~l~~l~~~v~~a~~~Gi~vildlH~  127 (481)
T 2osx_A           67 TEADLAREYADMGTNFVRFLISWRSVEPAPG--V-----YD--QQYLDRVEDRVGWYAERGYKVMLDMHQ  127 (481)
T ss_dssp             CHHHHHHHHHHHCCCEEEEEECHHHHCSBTT--B-----CC--HHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cHHHHHHHHHHCCCCEEEEeCcHHHcCCCCC--C-----cC--HHHHHHHHHHHHHHHHCCCEEEEEccc
Confidence            45567 8999999999998422211000011  1     11  123577889999999999999995554

>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A

Probab=94.34  E-value=0.035  Score=42.30  Aligned_cols=61  Identities=10%  Similarity=0.118  Sum_probs=39.5

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCC-CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGA-DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~-~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+.++.++++|+|+|-+.=-.+.-.. ..+      ..+|+  ...+.++++|+.|.++||+||+..|..
T Consensus        34 ~~di~~~~~~G~n~vRi~i~w~~~~~~~~~------~~~~~--~~l~~~~~~v~~~~~~gi~vild~h~~   95 (305)
T 1h1n_A           34 PNTIDTLISKGMNIFRVPFMMERLVPNSMT------GSPDP--NYLADLIATVNAITQKGAYAVVDPHNY   95 (305)
T ss_dssp             HHHHHHHHHTTCCEEEEEECHHHHSCSSTT------SCCCH--HHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             HHHHHHHHHCCCCEEEecccHHHcCCCCCC------CCcCH--HHHHHHHHHHHHHHHCCCEEEEecccc
Confidence            56688999999999998421111000 000      01111  225679999999999999999965543

>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*

Probab=94.16  E-value=0.094  Score=42.78  Aligned_cols=63  Identities=10%  Similarity=0.028  Sum_probs=48.0

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+..+-+|++|+.-|.|.-=+..+..-|.=..++|...+..++ .+=+++|+++|+++||++-+
T Consensus        81 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~k-rDlv~el~~A~rk~Glk~Gl  143 (450)
T 2wvv_A           81 KKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYK-RDILGELVKAYNDEGIDVHF  143 (450)
T ss_dssp             HHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTC-SCHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCC-CChHHHHHHHHHHcCCeEEE
Confidence            5557799999999999988776654333334556666664444 57799999999999999999

>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}

Probab=94.04  E-value=0.095  Score=36.66  Aligned_cols=69  Identities=14%  Similarity=0.078  Sum_probs=40.9

Q ss_pred             CHHHHHHhHHHHHHc-CC-cEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHH--HHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDL-GI-ESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHD--FEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~l-G~-~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~--~~~lv~~ah~~Gi~vil  119 (136)
                      +..++.+.+++++++ |+ ..+.+.|..+.+...+.--..+|.--+-.--+.++  ++++.+.|++.|+++.+
T Consensus       108 n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~~~~e~~~l~~~~~~~~~~g~~~~i  180 (182)
T 3can_A          108 DEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLKATI  180 (182)
T ss_dssp             SHHHHHHHHHHHHHSSSCCSEEEEEECCC------------------CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcccCCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence            467788888899999 99 99999988876532110000111111111123356  99999999999999876

>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*

Probab=94.02  E-value=0.035  Score=42.31  Aligned_cols=57  Identities=23%  Similarity=0.349  Sum_probs=39.2

Q ss_pred             HhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         57 EKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        57 ~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      +.++.++ ++|+|+|-+ |+.-.   ..||      .++|. +-.+.++++|+.|.++||+||+..|..
T Consensus        46 ~d~~~l~~~~G~N~vRi-~~~~~---~~~~------~~~~~-~~l~~ld~~v~~a~~~Gl~vild~h~~  103 (306)
T 2cks_A           46 SSLDALAYDWKADIIRL-SMYIQ---EDGY------ETNPR-GFTDRMHQLIDMATARGLYVIVDWHIL  103 (306)
T ss_dssp             HHHHHHHHTSCCSEEEE-EEESS---TTSG------GGCHH-HHHHHHHHHHHHHHTTTCEEEEEEECC
T ss_pred             HHHHHHHHHcCCCEEEE-Eeeec---CCCc------ccCHH-HHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            4577786 699999999 44321   1232      23332 125789999999999999999966653

>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}

Probab=93.97  E-value=0.21  Score=37.22  Aligned_cols=73  Identities=12%  Similarity=0.062  Sum_probs=42.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCc--------cCCCC----CCCCC--CCHHHHHHHHHHHHHC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDV--------SNYVD----VDPLF--GDMHDFEILIEEAHSR  113 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~--------~d~~~----vd~~~--Gt~~~~~~lv~~ah~~  113 (136)
                      .+-..+.+.|+.++++|+|+|-+-...+...  .+..|..        .+...    ..+.+  ...+.+.+++++|.++
T Consensus        34 ~~~~~~~~~l~~~~~~G~N~iR~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~  113 (387)
T 4awe_A           34 NDQPDIEKGMTAARAAGLTVFRTWGFNDKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKT  113 (387)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEEECCCEEESSCCTTCSSCCCCCTTCCTTCCCSEEECTTSCEEECCGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEeCcccCCCccCccccchhhhccccccccchhhhhcccCccchhhhhhHHHHHHHHHHc
Confidence            3456788889999999999999843222110  0011111        10000    00011  1134688999999999


Q ss_pred             CCcEEEecc
Q psy12953        114 GKPKRTFRE  122 (136)
Q Consensus       114 Gi~vil~nh  122 (136)
                      ||+|++..|
T Consensus       114 gi~v~~~~~  122 (387)
T 4awe_A          114 GIKLIVALT  122 (387)
T ss_dssp             TCEEEEECC
T ss_pred             CCEEEEeec
Confidence            999999433

>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A

Probab=93.94  E-value=0.088  Score=40.13  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             HhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953         57 EKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK  125 (136)
Q Consensus        57 ~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~  125 (136)
                      +.++.|+ ++|+|+|-+. +...   ..||.      .||.  ..+.++++|+.|.++||.||++.|...
T Consensus        47 ~~~~~l~~~~G~N~VRip-~~~~---~~~~~------~~~~--~~~~ld~~v~~a~~~Gi~Vild~H~~~  104 (303)
T 7a3h_A           47 ESMKWLRDDWGINVFRAA-MYTS---SGGYI------DDPS--VKEKVKEAVEAAIDLDIYVIIDWHILS  104 (303)
T ss_dssp             HHHHHHHHHTCCCEEEEE-EESS---TTSTT------TCTT--HHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred             HHHHHHHHhcCCCEEEEE-EEeC---CCCcc------CCHH--HHHHHHHHHHHHHHCCCEEEEEecccC
Confidence            3467887 7999999984 2211   12322      2444  378899999999999999999767543

>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}

Probab=93.58  E-value=0.084  Score=41.70  Aligned_cols=66  Identities=9%  Similarity=0.003  Sum_probs=42.3

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCC-CCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLF-GDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~-Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.+.++|++|++.|.|.-....+..   ..++-+..-...+ ...+-+++++++|+++||+|.+
T Consensus        52 d~~eW~~~~~~mK~~GikyvIl~~~~~~gf~---~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv~~  118 (340)
T 4h41_A           52 GEKEWDLDFQHMKRIGIDTVIMIRSGYRKFM---TYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKFYF  118 (340)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEESCSEETTEE---SSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEEEeeCCee---ccCcccccccCccCCcccHHHHHHHHHHHhCCeEEE
Confidence            4567788889999999999998654432211   0111110000011 1345699999999999999998

>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.52  E-value=0.062  Score=45.55  Aligned_cols=60  Identities=13%  Similarity=0.195  Sum_probs=43.6

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +...+.+.++.+|++|+|+|-+.=.+..-+...|  ..|       +...+++.++++.|+++||+||+
T Consensus        35 ~~e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G--~yd-------f~gl~~l~~fl~la~e~GL~VIl   94 (612)
T 3d3a_A           35 PKEYWEHRIKMCKALGMNTICLYVFWNFHEPEEG--RYD-------FAGQKDIAAFCRLAQENGMYVIV   94 (612)
T ss_dssp             CGGGHHHHHHHHHHHTCCEEEEECCHHHHCSSTT--CCC-------CSGGGCHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcChHHhcCCCCC--ccC-------hhHHHHHHHHHHHHHHCCCEEEE
Confidence            3567888899999999999998633332111112  223       33467899999999999999999

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=93.50  E-value=0.12  Score=44.18  Aligned_cols=56  Identities=14%  Similarity=0.100  Sum_probs=39.9

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCC-ccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPF-YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi-~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -..+.+.+..+|++|+|+|-+.-+ +..-....|  ..||          +.+.++++.|+++||+|++
T Consensus        22 ~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~g--~~~f----------~~ld~~i~~~~~~Gi~vil   78 (675)
T 3tty_A           22 KATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEV--SYDF----------TWLDDIIERLTKENIYLCL   78 (675)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSSS--CBCC----------HHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeeechhhhCCcCC--ccCH----------HHHHHHHHHHHHCCCEEEE
Confidence            456788899999999999998541 110000011  2222          6899999999999999999

>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}

Probab=93.44  E-value=0.18  Score=42.29  Aligned_cols=57  Identities=11%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .++-..+.++.+|++|+|+|-+.=.+..-+...|  ..||          +.+.++++.|+++||+|++
T Consensus        71 y~r~~~~~W~~mKa~G~NtVr~~V~W~~hEP~~G--~yDF----------~~LD~~ldla~e~GL~VIL  127 (552)
T 3u7v_A           71 WPSQMAKVWPAIEKVGANTVQVPIAWEQIEPVEG--QFDF----------SYLDLLLEQARERKVRLVL  127 (552)
T ss_dssp             SGGGHHHHHHHHHHHTCSEEEEEEEHHHHCSBTT--BCCC----------HHHHHHHHHHHHTTCEEEE
T ss_pred             chhhhHHHHHHHHHhCCCEEEEEehhhccCCCCC--ccCh----------hhHHHHHHHHHHCCCEEEE
Confidence            5667777888999999999998521111000112  3343          3589999999999999999

>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A

Probab=93.13  E-value=0.073  Score=45.02  Aligned_cols=59  Identities=14%  Similarity=0.062  Sum_probs=42.1

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+.+.+..+|++|+|+|.+-=.+..-+...|  ..||.       ...|+.++++.|+++||.|++
T Consensus        31 ~~~W~d~l~kmKa~G~NtV~~yv~W~~hEP~~G--~fdF~-------g~~dL~~fl~~a~~~Gl~Vil   89 (595)
T 4e8d_A           31 PEDWYHSLYNLKALGFNTVETYVAWNLHEPCEG--EFHFE-------GDLDLEKFLQIAQDLGLYAIV   89 (595)
T ss_dssp             GGGHHHHHHHHHHTTCCEEEEECCHHHHCSBTT--BCCCS-------GGGCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeccHHHcCCCCC--eeccc-------chhhHHHHHHHHHHcCCEEEE
Confidence            456788899999999999998322322111122  33442       245799999999999999999

>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*

Probab=93.01  E-value=0.077  Score=45.33  Aligned_cols=58  Identities=16%  Similarity=0.070  Sum_probs=41.5

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCc-cCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFY-PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~-~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -.-+.+.+..+|++|+|+|.+ .+. ..-+...|  ..||       ....||.++++.|+++||.||+
T Consensus        39 ~~~W~d~l~kmKa~G~NtV~~-yv~W~~hEP~~G--~fdF-------~g~~DL~~fl~~a~~~GL~ViL   97 (654)
T 3thd_A           39 RFYWKDRLLKMKMAGLNAIQT-YVPWNFHEPWPG--QYQF-------SEDHDVEYFLRLAHELGLLVIL   97 (654)
T ss_dssp             GGGHHHHHHHHHHTTCSEEEE-ECCHHHHCSBTT--BCCC-------SGGGCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEE-EechhhcCCCCC--ccCc-------cchHHHHHHHHHHHHcCCEEEe
Confidence            457788899999999999999 332 11111112  3333       2346799999999999999999

>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*

Probab=92.97  E-value=0.49  Score=40.95  Aligned_cols=66  Identities=14%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEE---cCCccCCCC-CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWI---QPFYPAGGA-DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l---~Pi~~~~~~-~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +.+.+..++-+|..+++|+..|.+   --=++.... ..+ .+.||..+.|.+    ++++|++-|+++|+++++
T Consensus       367 g~nte~~K~YIDFAA~~G~eyvLveGwD~GW~~~~~~~~~-~~fd~~~p~pd~----Dl~eL~~YA~sKGV~iil  436 (738)
T 2d73_A          367 SANTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKD-YVFDFVTPYPDF----DVKEIHRYAARKGIKMMM  436 (738)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEECSCBTTGGGCSSSCCS-SCCCSSCBCTTC----CHHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEeccCCcccccCcccc-ccccccccCCCC----CHHHHHHHHHhCCCEEEE
Confidence            468899999999999999999999   444432210 111 356888888875    699999999999999999

>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*

Probab=92.96  E-value=0.36  Score=40.41  Aligned_cols=46  Identities=17%  Similarity=0.242  Sum_probs=34.5

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -..+.+-++.+|++|+|+|-+-                  .++|+-+.    .+++++|++.||.||+
T Consensus        86 ~e~~~rDi~LmK~~GiN~VRvy------------------~~~P~~~~----d~~ldl~~~~GIyVIl  131 (555)
T 2w61_A           86 PKICLRDIPFLKMLGVNTLRVY------------------AIDPTKSH----DICMEALSAEGMYVLL  131 (555)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEC------------------CCCTTSCC----HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEe------------------ccCCCCCh----HHHHHHHHhcCCEEEE
Confidence            3556677899999999999992                  22333332    5678889999999999

>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*

Probab=92.78  E-value=0.12  Score=44.52  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=44.5

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+.+.+.++.++++|++.+.|-.-+-....++--...|+. +|+ +|.  +.++.|++.+|++||++.+
T Consensus       343 ~~e~~i~~~ad~~~~~G~~~~viDDgW~~~r~~~~~~~Gdw~-~d~~kFP--~Glk~lvd~ih~~Glk~Gl  410 (720)
T 2yfo_A          343 FTGDTIVDLAKEAASLGIDMVVMDDGWFGKRNDDNSSLGDWQ-VNETKLG--GSLAELITRVHEQGMKFGI  410 (720)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEECSSSBTTCSSTTSCTTCCS-BCHHHHT--SCHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEECcccccCCCcccccCCCCe-eChhhcC--ccHHHHHHHHHHCCCEEEE
Confidence            356788889999999999999886544322111100112222 332 333  2499999999999999999

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=92.69  E-value=0.32  Score=40.29  Aligned_cols=74  Identities=7%  Similarity=-0.001  Sum_probs=49.7

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILI  107 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv  107 (136)
                      ....+|-+.|-.--++    ......+.+.++.+|++|+++|-+.=.+..-+.. .|  ..|          .+.+++++
T Consensus         9 ~~~~~~vmlp~~~v~~----~~~~~~w~~dl~~mk~~Gln~Vr~~V~W~~iEP~g~G--~yd----------f~~~d~~i   72 (516)
T 1vem_A            9 PDYKAYLMAPLKKIPE----VTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQ--QFD----------FSYAQRFA   72 (516)
T ss_dssp             TTCEEEEECCSSCGGG----TSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTT--CCC----------CHHHHHHH
T ss_pred             CCCCeEEEecccccCC----CCCHHHHHHHHHHHHHcCCCEEEEecchhhccCCCCC--ccc----------hHHHHHHH
Confidence            3445665555433322    3678899999999999999999885433221111 12  222          35688999


Q ss_pred             HHHHHCCCcEE
Q psy12953        108 EEAHSRGKPKR  118 (136)
Q Consensus       108 ~~ah~~Gi~vi  118 (136)
                      +.|+++||+|+
T Consensus        73 d~a~~~GL~vi   83 (516)
T 1vem_A           73 QSVKNAGMKMI   83 (516)
T ss_dssp             HHHHHTTCEEE
T ss_pred             HHHHHCCCEEE
Confidence            99999999999

>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*

Probab=92.62  E-value=0.53  Score=40.57  Aligned_cols=67  Identities=13%  Similarity=0.148  Sum_probs=45.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCC-CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPL-FGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~-~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+.+.+.++.++++|++.|.|---+.....++--...|+ .+||. |.+  .++.|++.+|++||++.+
T Consensus       347 ~~ee~v~~~ad~~~~~G~~~~viDDGW~~~r~~~~~~~Gd~-~~d~~kFP~--Glk~lv~~ih~~Glk~Gl  414 (732)
T 2xn2_A          347 FNEDKLKTIVDKAKKLGLEMFVLDDGWFGHRDDDNSSLGDW-KVYKKKFPN--GLGHFADYVHEQGLKFGL  414 (732)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEECSSSBTTCSSTTSCTTCC-SBCTTTCTT--CHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEcCcccccCCCCccccCce-eeCchhcCc--cHHHHHHHHHHcCCEEEE
Confidence            45678888899999999999988533322211110012244 35543 632  599999999999999999

>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*

Probab=91.80  E-value=0.11  Score=46.44  Aligned_cols=59  Identities=12%  Similarity=0.048  Sum_probs=42.3

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -.-+.+.|..+|++|+|+|.+-=.+..-+...|  ..||       ....+|.++++.|+++||.||+
T Consensus        55 pe~W~d~l~kmKa~GlNtV~tYV~Wn~hEP~eG--~fdF-------sg~~dL~~fl~la~e~GL~VIL  113 (1003)
T 3og2_A           55 PSLYLDVFHKIKALGFNTVSFYVDWALLEGKPG--RFRA-------DGIFSLEPFFEAATKAGIYLLA  113 (1003)
T ss_dssp             GGGHHHHHHHHHTTTCCEEEEECCHHHHCSBTT--BCCC-------CGGGCSHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecchhhcCCCCC--Eecc-------cchhhHHHHHHHHHHcCCEEEe
Confidence            346788899999999999998533332221122  3344       2335799999999999999999

>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*

Probab=91.74  E-value=0.35  Score=39.51  Aligned_cols=63  Identities=14%  Similarity=0.002  Sum_probs=45.5

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+..+-+|++|+.-|.|.-=+..+..-|.=..+++.+++... ..+=+++|+++|+++||++-+
T Consensus       108 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~p-krDlv~El~~A~rk~Glk~Gl  170 (455)
T 2zxd_A          108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP-KRDLVGDLAKAVREAGLRFGV  170 (455)
T ss_dssp             HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTT-CSCHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCC-CCChHHHHHHHHHHcCCeEEE
Confidence            445679999999999998776654422222233555555332 457899999999999999999

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*

Probab=91.72  E-value=0.28  Score=41.41  Aligned_cols=56  Identities=13%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCC-ccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPF-YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi-~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -..+.+.++.+|++|+|+|-+.=+ +..-....|  ..|          .+.+.++++.|+++||+|++
T Consensus        13 ~~~~~~dl~~mk~~G~N~vR~~if~W~~~eP~~g--~~d----------~~~ld~~ld~a~~~Gi~vil   69 (645)
T 1kwg_A           13 KERWKEDARRMREAGLSHVRIGEFAWALLEPEPG--RLE----------WGWLDEAIATLAAEGLKVVL   69 (645)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTT--BCC----------CHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeeechhhcCCCCC--ccC----------hHHHHHHHHHHHHCCCEEEE
Confidence            356778899999999999998421 110000011  112          35799999999999999999

>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6

Probab=91.70  E-value=1.2  Score=35.20  Aligned_cols=67  Identities=12%  Similarity=0.037  Sum_probs=43.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCcc---------------CCCCCCC--CCCCHHHHHHHHHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVS---------------NYVDVDP--LFGDMHDFEILIEEAHS  112 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~---------------d~~~vd~--~~Gt~~~~~~lv~~ah~  112 (136)
                      -+.+.+++.|+.++..++|.+++-=-=.   .+|.+.+.               .|....+  .+=|.+|++++|+-|.+
T Consensus        30 ~~~~~ik~~id~mA~~KlN~lH~HltDd---q~~rle~~~~~~~~~~~~~~~~g~~~~~~~~~g~YT~~di~eiv~YA~~  106 (367)
T 1yht_A           30 YSPEVIKSFIDTISLSGGNFLHLHFSDH---ENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKA  106 (367)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECBSS---SCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEEEcC---CCceeeecchhhhhhhhccccCCCcCCCCCCCCCcCHHHHHHHHHHHHH
Confidence            4688999999999999999998721100   00111100               1110000  12278999999999999


Q ss_pred             CCCcEEE
Q psy12953        113 RGKPKRT  119 (136)
Q Consensus       113 ~Gi~vil  119 (136)
                      +||+||-
T Consensus       107 rgI~VIP  113 (367)
T 1yht_A          107 KGIELIP  113 (367)
T ss_dssp             TTCEEEE
T ss_pred             cCCEEEE
Confidence            9999998

>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13

Probab=91.54  E-value=0.26  Score=41.24  Aligned_cols=60  Identities=12%  Similarity=0.089  Sum_probs=43.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+.+.+.++.++++|++.|+|---+...       ..|+..-..+|-+   ++.|++.+|++||++.+
T Consensus       209 ~te~~v~~~ad~~~~~G~~~~~IDdgW~~~-------~Gdw~~d~~kFP~---lk~lvd~lh~~Glk~Gi  268 (564)
T 1zy9_A          209 LTWEETLKNLKLAKNFPFEVFQIDDAYEKD-------IGDWLVTRGDFPS---VEEMAKVIAENGFIPGI  268 (564)
T ss_dssp             CCHHHHHHHHHHGGGTTCSEEEECTTSEEE-------TTEEEEECTTCCC---HHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEECcccccc-------cCCcccCcccCCC---HHHHHHHHHHCCCEEEE
Confidence            356788888999999999999984333211       1233222345554   99999999999999999

>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31, alpha-glucosidase membrane, disease mutation, disulfide bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL; 2.15A {Homo sapiens} PDB: 3lpo_A*

Probab=91.28  E-value=1.3  Score=39.22  Aligned_cols=59  Identities=14%  Similarity=0.252  Sum_probs=43.5

Q ss_pred             CCHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-+++.+.++.+++.||  +.+|+--=+-..     +  .|| ..|+ +|.   +.++|++.+|++|+++++
T Consensus       330 ~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~~-----~--~dF-t~D~~~FP---dp~~mv~~Lh~~G~k~vl  391 (898)
T 3lpp_A          330 KSLDVVKEVVRRNREAGIPFDTQVTDIDYMED-----K--KDF-TYDQVAFN---GLPQFVQDLHDHGQKYVI  391 (898)
T ss_dssp             CSHHHHHHHHHHHHHTTCCCCEEEECGGGSST-----T--CTT-CCCTTTTT---THHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCceeeEeccccccC-----C--Ccc-eEChhhCC---CHHHHHHHHHHCCCEEEE
Confidence            456889999999999999  999985333211     1  222 3443 454   688999999999999999

>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*

Probab=90.99  E-value=0.15  Score=39.72  Aligned_cols=57  Identities=7%  Similarity=0.030  Sum_probs=38.7

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+.++.+|++|+|+|-+. +.....     ....    ++  ...+.+.++|+.|.++||.||+..|..
T Consensus        88 ~~di~~ik~~G~N~VRi~-~~~~~~-----~~~~----~~--~~l~~ld~~v~~a~~~Gi~Vild~H~~  144 (359)
T 4hty_A           88 KKHFEVIRSWGANVVRVP-VHPRAW-----KERG----VK--GYLELLDQVVAWNNELGIYTILDWHSI  144 (359)
T ss_dssp             HHHHHHHHHTTCSEEEEE-ECHHHH-----HHHH----HH--HHHHHHHHHHHHHHHTTCEEEEEECCE
T ss_pred             HHHHHHHHhcCCCEEEEe-ccHHHh-----hccC----CH--HHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            456789999999999995 322110     0000    00  124678999999999999999966653

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=90.90  E-value=0.67  Score=35.07  Aligned_cols=52  Identities=25%  Similarity=0.185  Sum_probs=38.9

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCc
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKS  126 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~  126 (136)
                      .+.+-+++++++||++|.++-=+-.-                   +.++..++|+.+++.|++|+.  .++..
T Consensus        86 ~~~~yl~~~k~lGf~~iEiS~G~i~l-------------------~~~~~~~~I~~~~~~G~~v~~--EvG~k  137 (251)
T 1qwg_A           86 KFDEFLNECEKLGFEAVEISDGSSDI-------------------SLEERNNAIKRAKDNGFMVLT--EVGKK  137 (251)
T ss_dssp             CHHHHHHHHHHHTCCEEEECCSSSCC-------------------CHHHHHHHHHHHHHTTCEEEE--EECCS
T ss_pred             cHHHHHHHHHHcCCCEEEECCCcccC-------------------CHHHHHHHHHHHHHCCCEEee--ecccc
Confidence            34555889999999999997532211                   157899999999999999988  44443

>3nsx_A Alpha-glucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, acarbose; 1.57A {Ruminococcus obeum} PDB: 3ffj_A 3n04_A 3pha_A* 3nuk_A 3nxm_A* 3m46_A 3mkk_A* 3m6d_A* 3nqq_A* 3poc_A*

Probab=90.89  E-value=1.3  Score=37.76  Aligned_cols=79  Identities=9%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             cCCCCCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-
Q psy12953         19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-   95 (136)
Q Consensus        19 ~~~~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-   95 (136)
                      ++++..|.|--   -|+.--.++        .+-+++.+.++.+++.||  ++||+--=+-.     +|  .|| ..|+ 
T Consensus       155 G~~~lpP~wal---G~~qsr~~Y--------~~~~~v~~v~~~~~~~~IP~dvi~lD~dy~~-----~~--~~f-t~d~~  215 (666)
T 3nsx_A          155 GRSYIPPKFAF---GFGQSRWGY--------TTKEDFRAVAKGYRENHIPIDMIYMDIDYMQ-----DF--KDF-TVNEK  215 (666)
T ss_dssp             CCCCCCCGGGG---SEEEEETTC--------CSHHHHHHHHHHHHHTTCCCCEEEECGGGSS-----TT--CTT-CCCTT
T ss_pred             CcccCCccccc---ccccccccc--------CCHHHHHHHHHHHHhcCCCcceEEEecHHHH-----hh--ccc-ccChh
Confidence            55566666632   344333344        356788889999999887  99999654322     12  122 4454 


Q ss_pred             CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         96 LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        96 ~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +|-   +.++|++.+|++|+++++
T Consensus       216 ~FP---dp~~mv~~Lh~~G~k~v~  236 (666)
T 3nsx_A          216 NFP---DFPEFVKEMKDQELRLIP  236 (666)
T ss_dssp             TCT---THHHHHHHHHTTTCEEEE
T ss_pred             hCC---CHHHHHHHHHHcCceEEe
Confidence            455   588999999999999998

>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}

Probab=90.71  E-value=1.4  Score=38.26  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+.+.+.++.++++|++.+.|-.-+.....+.--...|+ ..|+ +|-  +.|+.|++.+|++||++.+
T Consensus       344 ~tee~il~~ad~~~~~G~e~fviDDGW~~~r~~d~~~~Gdw-~~d~~kFP--~Gl~~lv~~ih~~Glk~gl  411 (745)
T 3mi6_A          344 FNEAKLMTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDW-FVDQRKFP--DGIEHFSQAVHQQGMKFGL  411 (745)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEECTTCBTTCSSTTSCTTCC-SBCTTTCT--THHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEECcccccCCCCCcccCCCc-eeChhhcC--ccHHHHHHHHHHCCCEEEE
Confidence            35578888899999999999988665443221100112233 2342 343  4699999999999999999

>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*

Probab=90.67  E-value=0.72  Score=38.12  Aligned_cols=72  Identities=15%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-------CCCCCHHHHHHHHHHHHHCCCcEEE---
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-------PLFGDMHDFEILIEEAHSRGKPKRT---  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-------~~~Gt~~~~~~lv~~ah~~Gi~vil---  119 (136)
                      =+.+.+++.|+.++..++|.+++-.-=.   .+|.|....|-.+-       ..+=|.+|++++|+-|+++||+||-   
T Consensus       165 ~~~~~ik~~id~ma~~KlN~lh~HltDd---q~wr~e~~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEID  241 (507)
T 1now_A          165 LPVKIILKTLDAMAFNKFNVLHWHIVDD---QSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFD  241 (507)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCCS---SCCCBCCSSCHHHHHHHSSSTTSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCcEEEEeeccC---ccceeeccchhhhhcccCcCCCCCCCHHHHHHHHHHHHHcCCEEEEccC
Confidence            3578889999999999999998754211   12333333222210       1222789999999999999999998   


Q ss_pred             -eccCC
Q psy12953        120 -FREVT  124 (136)
Q Consensus       120 -~nh~~  124 (136)
                       +-|+.
T Consensus       242 ~PGH~~  247 (507)
T 1now_A          242 TPGHTL  247 (507)
T ss_dssp             ESSSCT
T ss_pred             CchhHH
Confidence             66654

>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*

Probab=90.65  E-value=0.11  Score=46.40  Aligned_cols=58  Identities=10%  Similarity=0.091  Sum_probs=42.2

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .-+.+.+..+|++|+|+|.+-=.+..-+...|  ..||       ....+|.++++.|+++||.||+
T Consensus        36 ~~W~d~l~kmka~G~NtV~~yvfW~~hEP~~G--~fdF-------~g~~dL~~fl~~a~e~Gl~ViL   93 (971)
T 1tg7_A           36 SLYIDIFEKVKALGFNCVSFYVDWALLEGNPG--HYSA-------EGIFDLQPFFDAAKEAGIYLLA   93 (971)
T ss_dssp             GGHHHHHHHHHTTTCCEEEEECCHHHHCSBTT--BCCC-------CGGGCSHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeccHHHhCCCCC--eecc-------cchHHHHHHHHHHHHcCCEEEE
Confidence            46788899999999999998443433221222  3333       2345799999999999999999

>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12

Probab=90.61  E-value=0.71  Score=37.01  Aligned_cols=55  Identities=7%  Similarity=0.014  Sum_probs=38.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .++....+-|+..++.||+.|+.+=......      ..         -..+.|++|++.||++||+|++
T Consensus        38 ~~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~------~~---------~~~~~~~~l~~~a~~~g~~vi~   92 (385)
T 1x7f_A           38 STKEKDMAYISAAARHGFSRIFTCLLSVNRP------KE---------EIVAEFKEIINHAKDNNMEVIL   92 (385)
T ss_dssp             SCHHHHHHHHHHHHTTTEEEEEEEECCC-----------------------HHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEccCCccCCC------hH---------HHHHHHHHHHHHHHHCCCEEEE
Confidence            4567777778888889999998754221110      00         1247899999999999999999

>3kzs_A Glycosyl hydrolase family 5; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}

Probab=90.43  E-value=1.7  Score=35.66  Aligned_cols=70  Identities=13%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC----CCCCC-CccCCCCCCCC--CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG----ADLGY-DVSNYVDVDPL--FGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~----~~~gY-~~~d~~~vd~~--~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+..+...-|+..++.|||.|.+.=+.+.+.    ...++ +..||..+++.  +.=.+.+.+.|+.|.++||.+-|
T Consensus        49 l~~~e~~~yL~~R~~qGFNvIq~~vl~~~p~~n~~g~~pf~~~~df~~~n~pn~~~YF~h~d~~I~~a~~~Gi~~~L  125 (463)
T 3kzs_A           49 LNRDEAEYYLEQCKRRGYNVIQVQTLNNVPSMNIYGQYSMTDGYNFKNINQKGVYGYWDHMDYIIRTAAKKGLYIGM  125 (463)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEESCSSSSCBCTTSCBSCSSTTCCTTCCCTTCCCHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeecCCCCCCcCCCCCcCCCcccccCCCcCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            4566777789999999999999866522221    11111 12467777752  35579999999999999999988

>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31, cell membrane, disulfide bond, glycoprotein, glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A {Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A* 3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*

Probab=90.38  E-value=1.4  Score=38.85  Aligned_cols=79  Identities=13%  Similarity=0.230  Sum_probs=53.0

Q ss_pred             cCCCCCccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCCC-
Q psy12953         19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVDP-   95 (136)
Q Consensus        19 ~~~~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-   95 (136)
                      ++++.+|.|-   .-|+.--..+        .+-+++.+.++.+++.||  +.+|+--=+-.     ++  .|| ..|+ 
T Consensus       282 G~p~lpP~Wa---lG~~qsr~~Y--------~s~~ev~~vv~~~r~~~IP~Dvi~lDidy~~-----~~--~dF-t~D~~  342 (875)
T 3l4y_A          282 GRPALPSYWA---LGFHLSRYEY--------GTLDNMREVVERNRAAQLPYDVQHADIDYMD-----ER--RDF-TYDSV  342 (875)
T ss_dssp             CCCCCCCGGG---GSEEECCSCC--------CSHHHHHHHHHHHHHTTCCCCEEEECGGGSB-----TT--BTT-CCCTT
T ss_pred             CCCCCCCccc---cccceeccCC--------CCHHHHHHHHHHHHhcCCCCceEEEccchhc-----CC--Cce-eeChh
Confidence            5556666663   3344433333        456899999999999998  99998432211     11  222 4454 


Q ss_pred             CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         96 LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        96 ~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +|.   +.++|++++|++|+++++
T Consensus       343 ~FP---dp~~mv~~Lh~~G~k~v~  363 (875)
T 3l4y_A          343 DFK---GFPEFVNELHNNGQKLVI  363 (875)
T ss_dssp             TTT---THHHHHHHHHHTTCEEEE
T ss_pred             hCC---CHHHHHHHHHHCCCEEEE
Confidence            555   488999999999999999

>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*

Probab=90.00  E-value=1  Score=37.16  Aligned_cols=72  Identities=14%  Similarity=0.103  Sum_probs=49.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCC--------CCCCCCHHHHHHHHHHHHHCCCcEEE--
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDV--------DPLFGDMHDFEILIEEAHSRGKPKRT--  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~v--------d~~~Gt~~~~~~lv~~ah~~Gi~vil--  119 (136)
                      =+.+.+++.|+.++..++|.+++---=+   .+|.|.+..|-.+        ...+=|.+|++++|+-|.++||+||-  
T Consensus       159 ~~~~~ik~~id~mA~~KlN~lh~HltDd---q~wr~ei~~~P~Lt~~Ga~~~~~~~YT~~di~eiv~yA~~rgI~VIPEI  235 (507)
T 2gjx_A          159 LPLSSILDTLDVMAYNKLNVFHWHLVDD---PSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEF  235 (507)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCCS---SCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHhCCceEEEEEecc---cCeeeeccccchhhhccccCCCCCCcCHHHHHHHHHHHHHcCCEEEECC
Confidence            3578889999999999999998733111   1233333222211        01223789999999999999999998  


Q ss_pred             --eccCC
Q psy12953        120 --FREVT  124 (136)
Q Consensus       120 --~nh~~  124 (136)
                        +-|+.
T Consensus       236 D~PGH~~  242 (507)
T 2gjx_A          236 DTPGHTL  242 (507)
T ss_dssp             CCSSSCT
T ss_pred             CCcchHH
Confidence              55654

>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural genomics/PR initiative, RSGI, structural genomics, hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4 PDB: 1np2_A

Probab=89.78  E-value=0.75  Score=37.27  Aligned_cols=65  Identities=12%  Similarity=0.194  Sum_probs=43.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .-+....+-++.++++|++++-++=-++.-... .|       .+|  --..+-+.+++++|+++||++++ ..|-
T Consensus        54 D~Y~~~~eDi~lm~~~G~~~~R~si~W~Ri~P~g~g-------~~n--~~gl~~y~~~id~l~~~GI~p~vtL~H~  120 (431)
T 1ug6_A           54 DHYRRYEEDIALMQSLGVRAYRFSVAWPRILPEGRG-------RIN--PKGLAFYDRLVDRLLASGITPFLTLYHW  120 (431)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCHHHHSTTSSS-------CCC--HHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             cchhhhHHHHHHHHHcCCCEEEcccCHHHcccCCCC-------CcC--HHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            346667888999999999999986533221100 01       011  01145689999999999999999 5554

>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}

Probab=89.57  E-value=0.34  Score=39.76  Aligned_cols=66  Identities=9%  Similarity=0.087  Sum_probs=49.3

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCC--CCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLF--GDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~--Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-.+..+-+|++|+.-+.+..=+..+..-|.=..++|...+..+  |..+=+++|+++|+++||++-+
T Consensus        55 d~~~w~~~~k~aGaky~v~takHHdGf~lw~S~~t~~~~~~~p~~~~k~Div~e~~~A~r~~Gl~~g~  122 (469)
T 3eyp_A           55 DCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGI  122 (469)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEE
T ss_pred             CHHHHHHHHHHcCCCEEEEEEEeCCCccccCCCCCCcccccCcccCCCCCHHHHHHHHHHHcCCeEEE
Confidence            44666789999999999998776655433333456666666444  3347799999999999999999

>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A

Probab=89.21  E-value=0.67  Score=35.58  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=47.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEE----cCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWI----QPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK  125 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l----~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~  125 (136)
                      ..++.+.+.|+|+++.||+.+.|    .|++..+...|.  ...        -..++++++-+.+.++|+++.+  |.+.
T Consensus        58 ~nl~~l~~~l~~~~~~gi~~~ri~s~~f~~ft~~~~~w~--~~~--------~~~~~~~~~~~~~~~~gi~i~~--H~py  125 (301)
T 2j6v_A           58 ENLRDLERILRFNADHGFALFRIGQHLIPFASHPLFPYD--WEG--------AYEEELARLGALARAFGQRLSM--HPGQ  125 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEECCGGGSTTTTSTTCCSC--HHH--------HHHHHHHHHHHHHHHTTCEEEE--CCCT
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEeccCcccccCCCcccCC--cCC--------CCHHHHHHHHHHHHHcCCeEEE--eCch
Confidence            55788888999999999999999    467655433232  111        1126888999999999999988  6554

>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A {Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A* 2o9r_A*

Probab=89.21  E-value=0.37  Score=39.37  Aligned_cols=60  Identities=17%  Similarity=0.223  Sum_probs=44.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC-----HHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD-----MHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt-----~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .-+....+-++-+++||++++-++=-+.              .|.|.-|.     .+-+.+++++|+++||++++ ..|-
T Consensus        64 D~Y~~~~eDi~lm~~~G~~~~R~sisWs--------------Ri~P~~g~~n~~Gl~~y~~lid~l~~~GI~p~vtL~H~  129 (454)
T 2o9p_A           64 DHFHHFKEDVQLMKQLGFLHYRFSVAWP--------------RIMPAAGIINEEGLLFYEHLLDEIELAGLIPMLTLYHW  129 (454)
T ss_dssp             CHHHHHHHHHHHHHTTTCCEEEEECCHH--------------HHCSSTTCCCHHHHHHHHHHHHHHHHHTCEEEEEEESS
T ss_pred             chHHHHHHHHHHHHhcCCceEEecccHH--------------hhCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            4466778889999999999999964222              22222222     34589999999999999999 5554

>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*

Probab=89.17  E-value=1.4  Score=37.07  Aligned_cols=72  Identities=6%  Similarity=0.030  Sum_probs=51.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-------CCCCCHHHHHHHHHHHHHCCCcEEE---
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-------PLFGDMHDFEILIEEAHSRGKPKRT---  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-------~~~Gt~~~~~~lv~~ah~~Gi~vil---  119 (136)
                      -+.+.+++.|+.++..++|.+++---=   ..+|.|.+..|-.+-       ..+=|.+|++++++-|.++||+||-   
T Consensus       201 ~~~~~ik~~id~mA~~KlN~lH~HltD---dqgwrlei~~~P~Lt~~Ga~~~~~~YT~~di~eiv~yA~~rgI~VIPEId  277 (572)
T 3ozo_A          201 YSIESIKRTIEAMAAVKLNTFHWHITD---SQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFD  277 (572)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCC---SSCCCBCCSSSHHHHHHHSSSSSSCBCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCceEEEEeec---CcCceeccccCcchhccCCcCCCCCcCHHHHHHHHHHHHHhCCceeeeec
Confidence            468889999999999999999885421   112344433332210       1122789999999999999999999   


Q ss_pred             -eccCC
Q psy12953        120 -FREVT  124 (136)
Q Consensus       120 -~nh~~  124 (136)
                       +-|+.
T Consensus       278 ~PGH~~  283 (572)
T 3ozo_A          278 APAHVG  283 (572)
T ss_dssp             ESSSCC
T ss_pred             cchHHH
Confidence             67764

>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme, thermostability, TIM barrel, alkylglucosides; 2.50A {Pyrococcus horikoshii} SCOP: c.1.8.4

Probab=89.17  E-value=0.41  Score=38.68  Aligned_cols=65  Identities=9%  Similarity=0.081  Sum_probs=43.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .-+....+-++.++++|++++-++=-++.-....|  ..|       ....+-+.++|++|+++||++++ ..|-
T Consensus        47 d~Y~~~~eDi~lm~~~G~~~~R~si~W~ri~P~~g--~~n-------~~gl~~yd~lid~l~~~GI~pivtL~H~  112 (423)
T 1vff_A           47 NHWELYRDDIQLMTSLGYNAYRFSIEWSRLFPEEN--KFN-------EDAFMKYREIIDLLLTRGITPLVTLHHF  112 (423)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCHHHHCSBTT--BCC-------HHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             cchhccHHHHHHHHHcCCCEEEeecCHHHhCCCCC--CcC-------HHHHHHHHHHHHHHHHCCCEEEEEccCC
Confidence            34566788899999999999999643221110001  111       11233469999999999999999 5554

>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*

Probab=89.06  E-value=0.6  Score=33.39  Aligned_cols=66  Identities=14%  Similarity=0.062  Sum_probs=43.9

Q ss_pred             CHHHHHHhHHHHHHcCC-cEEEEcCCccCCCCCCCCCc--cCCCCCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953         51 DMRGITEKLDHFVDLGI-ESLWIQPFYPAGGADLGYDV--SNYVDVDPLFGDMHDFEILIEEAHSRGKPKR  118 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~-~~I~l~Pi~~~~~~~~gY~~--~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vi  118 (136)
                      +..++.+.++.++++|. ..+.+.|..+.+..  .|..  .+|..-+-..-+.++++++.+.+.+.|++|+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~  244 (245)
T 3c8f_A          176 DDDSAHRLGEFTRDMGNVEKIELLPYHELGKH--KWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVM  244 (245)
T ss_dssp             CHHHHHHHHHHHHHHCCEEEEEEEECCCCSHH--HHHHTTCCCTTTTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred             CHHHHHHHHHHHHhcCCCceeEEEeccccChh--HHHhhCcccccccCCCCCHHHHHHHHHHHHhcCCeec
Confidence            46778888888889984 88888887764421  0110  1111112233567899999999999999874

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=88.89  E-value=3.9  Score=29.57  Aligned_cols=49  Identities=14%  Similarity=0.155  Sum_probs=33.7

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ++.+.++.++++|++.|.+.+..- +                .--+.++++++.+.+.++||++..
T Consensus        31 ~~~~~l~~~~~~G~~~vEl~~~~~-~----------------~~~~~~~~~~~~~~l~~~gl~i~~   79 (257)
T 3lmz_A           31 DLDTTLKTLERLDIHYLCIKDFHL-P----------------LNSTDEQIRAFHDKCAAHKVTGYA   79 (257)
T ss_dssp             CHHHHHHHHHHTTCCEEEECTTTS-C----------------TTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHhCCCEEEEecccC-C----------------CCCCHHHHHHHHHHHHHcCCeEEE
Confidence            678888999999999999987520 0                001345666666666677776655

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=88.62  E-value=0.97  Score=30.19  Aligned_cols=42  Identities=17%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +...+.++.+.++|+.+||+.|         |+.                =+++++.|+++||+++-
T Consensus        69 ~~v~~~v~e~~~~g~k~v~~~~---------G~~----------------~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           69 QNQLSEYNYILSLKPKRVIFNP---------GTE----------------NEELEEILSENGIEPVI  110 (122)
T ss_dssp             HHHGGGHHHHHHHCCSEEEECT---------TCC----------------CHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEECC---------CCC----------------hHHHHHHHHHcCCeEEC
Confidence            4456678899999999999875         210                15889999999999884

>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*

Probab=88.50  E-value=0.86  Score=37.46  Aligned_cols=75  Identities=9%  Similarity=0.009  Sum_probs=49.9

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCC-C-CHHHHHHHHHHHHHCCCcEEE-eccCCCccC
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLF-G-DMHDFEILIEEAHSRGKPKRT-FREVTKSFA  128 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~-G-t~~~~~~lv~~ah~~Gi~vil-~nh~~~~~~  128 (136)
                      +-.+..+-+|++|+.-|.|..=+..+..-|.=..++|..-...+ | ..+=+++|+++|+++||++-+ +-+....|+
T Consensus        63 d~~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~g~Y~S~~d~~~~  140 (478)
T 3ues_A           63 DVDQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEE  140 (478)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEEEEEECSCCSSCT
T ss_pred             CHHHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeEEEEeChHHhCCc
Confidence            44666789999999999998766654432332344553222222 2 347799999999999999999 444444444

>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*

Probab=88.22  E-value=0.95  Score=37.43  Aligned_cols=67  Identities=9%  Similarity=0.085  Sum_probs=46.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCC---------CCC---CCCCCHHHHHHHHHHHHHCCCcE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV---------DVD---PLFGDMHDFEILIEEAHSRGKPK  117 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~---------~vd---~~~Gt~~~~~~lv~~ah~~Gi~v  117 (136)
                      -+.+.+++.|+.++..++|.+++-.-=..   +|.+.+..|-         .+.   ..+=|.+|++++++-|+++||+|
T Consensus       171 ~~~~~ik~~id~ma~~KlN~lh~HltDdq---~wriei~~~P~Lt~~ga~~~~~~~~~g~YT~~di~eiv~yA~~rgI~V  247 (512)
T 1jak_A          171 FGVDEVKRYIDRVARYKYNKLHLHLSDDQ---GWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEV  247 (512)
T ss_dssp             CCHHHHHHHHHHHHTTTCCEEEEECBCSS---CBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEeccCC---CceehhhhhHHHHhhcCccccCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            46788999999999999999988532111   1222222221         111   11227899999999999999999


Q ss_pred             EE
Q psy12953        118 RT  119 (136)
Q Consensus       118 il  119 (136)
                      |-
T Consensus       248 IP  249 (512)
T 1jak_A          248 VP  249 (512)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1

Probab=88.03  E-value=1.9  Score=33.74  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             CCHHHHHHhHHHH-----HHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCC-CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHF-----VDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPL-FGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l-----~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~-~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+.+.+.++.+     +++|++.|.|--=+.... ...    .|+ .+||. |-  +.++.|++.+|++|+++.+
T Consensus        23 ~~e~~i~~~ad~~~~~gl~~~G~~~v~iDdgW~~~~rd~~----G~~-~~~~~~FP--~Gl~~l~~~ih~~Glk~Gi   92 (362)
T 1uas_A           23 INEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQ----GNF-VPNRQTFP--SGIKALADYVHAKGLKLGI   92 (362)
T ss_dssp             CCHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTT----SCC-CBCTTTCT--TCHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCchhcCCcEEEECCCcCCCCCCCC----CCe-eEChhccC--ccHHHHHHHHHHCCCEeEE
Confidence            3567788888888     999999998843332211 111    234 44543 52  2599999999999999998

>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}

Probab=87.92  E-value=0.81  Score=36.50  Aligned_cols=55  Identities=11%  Similarity=0.032  Sum_probs=39.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+.....+-|+..++.||+.|+.+=...-..      ..         -..+.|++|++.||++||+|++
T Consensus        14 ~~~~~~~~yi~~a~~~Gf~~IFTSL~~~e~~------~~---------~~~~~~~~l~~~a~~~g~~vi~   68 (372)
T 2p0o_A           14 EITNDTIIYIKKMKALGFDGIFTSLHIPEDD------TS---------LYRQRLTDLGAIAKAEKMKIMV   68 (372)
T ss_dssp             CCCHHHHHHHHHHHHTTCCEEEEEECCC--------------------CHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEccCCccCCC------hH---------HHHHHHHHHHHHHHHCCCEEEE
Confidence            4456777778888899999998753221110      00         1147899999999999999999

>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese enhancement, hydro; HET: 7PE; 1.90A {Clostridium cellulovorans}

Probab=87.85  E-value=0.75  Score=37.53  Aligned_cols=65  Identities=15%  Similarity=0.172  Sum_probs=43.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .-+....+-++-+++||++++-++=-+..-... .|  .     +|  --..+-+.+++++|+++||++++ ..|-
T Consensus        56 d~Y~~~~eDi~lm~~~G~~~~R~si~Wsri~P~G~g--~-----~n--~~G~~~y~~lid~l~~~GI~p~vtL~h~  122 (453)
T 3ahx_A           56 DHYHRYKEDVQLLKSLGIKSYRFSIAWPRIFPKGFG--E-----IN--QKGIQFYRDLIDELIKNDIEPAITIYHW  122 (453)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEECCHHHHCTTSSS--S-----CC--HHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             cHHHHHHHHHHHHHHhCCCeEecccCHHHhccCCCC--C-----cC--HHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            446667888999999999999997433211100 11  1     11  01245689999999999999999 5553

>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase, polysaccharide degradation, transition state mimic, carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A* 1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A* 2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A* 2j7f_A* 2j7g_A* 2j7h_A* ...

Probab=87.69  E-value=0.77  Score=37.62  Aligned_cols=66  Identities=12%  Similarity=0.122  Sum_probs=43.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .-+....+-++.++++|++++-++=-+..-.. .|-..     +  .....+-+.++|++|+++||++++ ..|-
T Consensus        78 D~Y~~~~eDi~lm~~~G~~~~R~si~W~Ri~P-~G~g~-----~--n~~gl~~yd~lid~l~~~GI~pivtL~H~  144 (468)
T 2j78_A           78 DHYNRWKEDIEIIEKLGVKAYRFSISWPRILP-EGTGR-----V--NQKGLDFYNRIIDTLLEKGITPFVTIYHW  144 (468)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEECCHHHHST-TSSSC-----C--CHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             cccccCHHHHHHHHHcCCCEEEeccCHHHhCC-CCCCC-----c--CHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence            33556688899999999999999643322110 01001     1  112235689999999999999999 5554

>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family 31, multidomain protein, (beta/alpha)8 barrel, retaining mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*

Probab=87.54  E-value=1.3  Score=37.83  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=43.1

Q ss_pred             CHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+++.+.++.+++.||  +.||+--=+.     .||.  || ..| .+|-+   .++|++++|++|+++++
T Consensus       188 ~~~ev~~v~~~~~~~~IP~dvi~lD~~y~-----~~~~--df-t~d~~~FPd---p~~mv~~Lh~~G~k~~l  248 (693)
T 2g3m_A          188 PQDKVVELVDIMQKEGFRVAGVFLDIHYM-----DSYK--LF-TWHPYRFPE---PKKLIDELHKRNVKLIT  248 (693)
T ss_dssp             SHHHHHHHHHHHHHTTCCEEEEEECGGGS-----BTTB--TT-CCCTTTCSC---HHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCcceEEEeccee-----cCCc--cc-eEChhhCCC---HHHHHHHHHHCCCEEEE
Confidence            56788899999999999  9999974332     1222  33 344 34654   68999999999999999

>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}

Probab=87.51  E-value=1.4  Score=36.78  Aligned_cols=70  Identities=10%  Similarity=0.029  Sum_probs=44.6

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcC-------C--ccCCC--CCCCCCc--------cCCCCCCC--CCCCHHHHHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQP-------F--YPAGG--ADLGYDV--------SNYVDVDP--LFGDMHDFEILIE  108 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~P-------i--~~~~~--~~~gY~~--------~d~~~vd~--~~Gt~~~~~~lv~  108 (136)
                      -+.+.+++.|+.++..++|.+++--       +  -..|.  ...+|..        .+.+.-.+  .+=|.+|++++|+
T Consensus       152 ~~~~~ik~~ID~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~~~~g~YT~~di~eIv~  231 (543)
T 3rcn_A          152 MPKDNVLRFIEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVA  231 (543)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCCCEECCBCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCCccCCCcCHHHHHHHHH
Confidence            4678899999999999999999831       1  11111  0001100        00011111  1227899999999


Q ss_pred             HHHHCCCcEEE
Q psy12953        109 EAHSRGKPKRT  119 (136)
Q Consensus       109 ~ah~~Gi~vil  119 (136)
                      -|.++||+||-
T Consensus       232 YA~~rgI~VIP  242 (543)
T 3rcn_A          232 FAADRHITVIP  242 (543)
T ss_dssp             HHHHTTCEEEE
T ss_pred             HHHHcCCEEee
Confidence            99999999998

>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*

Probab=87.48  E-value=1.6  Score=38.37  Aligned_cols=75  Identities=15%  Similarity=0.132  Sum_probs=48.9

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCC------ccCCCC-----CCCCCc---cCCCCCCCCCC----------CHHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPF------YPAGGA-----DLGYDV---SNYVDVDPLFG----------DMHDFEI  105 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi------~~~~~~-----~~gY~~---~d~~~vd~~~G----------t~~~~~~  105 (136)
                      -+.+.+++.|+.++..++|.+++-.-      .+.+..     -.+|..   .....+.|.+|          |.+|+++
T Consensus       325 ~~~~~ik~~Id~mA~~KlN~lh~HltDdqgwriei~~yP~Lt~~Ga~r~~~~~~~~~~~p~~g~~~~~~~g~YT~~dire  404 (858)
T 1c7s_A          325 HKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYID  404 (858)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECEETTEECBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTCCSSCEECCBCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcEEEEEeccCccccccccCCchhhhccccccccccccccccccccCCCCccCCCCCHHHHHH
Confidence            46788999999999999999987442      111110     011111   11112223332          6899999


Q ss_pred             HHHHHHHCCCcEEE----eccCC
Q psy12953        106 LIEEAHSRGKPKRT----FREVT  124 (136)
Q Consensus       106 lv~~ah~~Gi~vil----~nh~~  124 (136)
                      +|+-|.++||+||-    +-|+.
T Consensus       405 Iv~YA~~rgI~VIPEID~PGH~~  427 (858)
T 1c7s_A          405 IIKYAQARQIEVIPEIDMPAHAR  427 (858)
T ss_dssp             HHHHHHTTTCEEEEEEEESSSCH
T ss_pred             HHHHHHHcCCEEEEcccccchHH
Confidence            99999999999998    55643

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=87.36  E-value=0.85  Score=34.46  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.8

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCC
Q psy12953         54 GITEKLDHFVDLGIESLWIQPF   75 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi   75 (136)
                      ++.+.++.++++|+++|.+.+.
T Consensus        37 ~l~~~l~~aa~~G~~~VEl~~~   58 (305)
T 3obe_A           37 DMPNGLNRLAKAGYTDLEIFGY   58 (305)
T ss_dssp             THHHHHHHHHHHTCCEEEECCB
T ss_pred             CHHHHHHHHHHcCCCEEEeccc
Confidence            6788899999999999999865

>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*

Probab=87.34  E-value=4.2  Score=32.58  Aligned_cols=63  Identities=13%  Similarity=0.137  Sum_probs=42.1

Q ss_pred             CHHHHHHhHHHH-----HHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHF-----VDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l-----~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.++.+     +++|++.|.|--=+.....+   ...|+ .+|+ +|-  +.++.|++.+|++||++-+
T Consensus        27 ~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d---~~G~~-~~~~~kFP--~Gl~~l~~~i~~~Glk~Gi   95 (417)
T 1szn_A           27 DESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGR---VDGHI-APNATRFP--DGIDGLAKKVHALGLKLGI   95 (417)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCC---BTTBC-CBCTTTCT--THHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCC---CCCCE-EECcccCC--cCHHHHHHHHHHcCCEEEE
Confidence            456777777877     99999999984322221111   12233 3443 353  3799999999999999988

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=87.34  E-value=1.7  Score=31.51  Aligned_cols=59  Identities=27%  Similarity=0.276  Sum_probs=36.7

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ++.+.++.++++|+++|.+.+....+.   +|.  ++. . +.--+.++.+++.+.+.++||++..
T Consensus        23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~---~~~--~~~-~-~~~~~~~~~~~~~~~l~~~gl~i~~   81 (262)
T 3p6l_A           23 PLTEALDKTQELGLKYIEIYPGHKLGG---KWG--DKV-F-DFNLDAQTQKEIKELAASKGIKIVG   81 (262)
T ss_dssp             CHHHHHHHHHHTTCCEEEECTTEECCG---GGT--TCE-E-STTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHcCCCEEeecCCccccc---ccc--ccc-c-cccCCHHHHHHHHHHHHHcCCeEEE
Confidence            578889999999999999987543110   000  000 0 1122456677777777777777665

>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*

Probab=87.06  E-value=0.51  Score=39.92  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccC----------CCCCCCCCccC--CCCCC-CCCCCHHHHHHHHHHHHHCCCc
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPA----------GGADLGYDVSN--YVDVD-PLFGDMHDFEILIEEAHSRGKP  116 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~----------~~~~~gY~~~d--~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~  116 (136)
                      ++.+-+++.++.|++.||++|++-=....          ..+.+. ...+  ++..+ -++..  .|++||++|+++||+
T Consensus       380 sSkRFIIdNM~~Lk~~GVtTLYMEHL~SDlhQAdLD~YLqTG~MS-k~L~a~Lktld~Ghl~~--sF~~Li~~AR~nGIR  456 (746)
T 2ebf_X          380 KSIDFFLNNLTTFIDNGLTEIAISDLPYDIVQQEISQFLQGSNEW-KTLDAMLFNLDKGDING--AFRKLLQSAKDNNIK  456 (746)
T ss_dssp             HHHHHHHHTHHHHHHTTCCEEEEEEEEHHHHHHHHHHHHTTCSCC-HHHHHHHHHHTTTCSSC--HHHHHHHHHHHTTCE
T ss_pred             hhHHHHHHHHHHHHhCCceeehHhhhhhHHHHHHHHHHHhcCCcc-hHHHHHHhhcccccccH--HHHHHHHHHHHcCce
Confidence            34788899999999999999999443211          000000 0000  00000 01111  799999999999999


Q ss_pred             EEEeccCCCccC
Q psy12953        117 KRTFREVTKSFA  128 (136)
Q Consensus       117 vil~nh~~~~~~  128 (136)
                      |+..-+.+..++
T Consensus       457 IrAID~asSy~p  468 (746)
T 2ebf_X          457 FRAIGHSDNSVP  468 (746)
T ss_dssp             EEEEECCTTCSS
T ss_pred             EEEeccccccCC
Confidence            999444444344

>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*

Probab=86.79  E-value=1.4  Score=37.99  Aligned_cols=63  Identities=10%  Similarity=-0.014  Sum_probs=44.6

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +...+.+.++.++..+.|.+++-+- +.+  .+++  ..+...-|.+ |.+|++++++.|+++||+|+-
T Consensus       142 s~~~ik~~id~ma~~KlN~~h~hl~-Ddp--~~~~--~~wr~~yP~l-t~~ei~elv~yA~~rgI~vvp  204 (716)
T 2cho_A          142 SHQARLSQLKFYGKNKMNTYIYGPK-DDP--YHSA--PNWRLPYPDK-EAAQLQELVAVANENEVDFVW  204 (716)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECCT-TCT--TTST--TGGGSCCCHH-HHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEeec-cCc--cccc--ccccccCChh-hHHHHHHHHHHHHHcCCEEEE
Confidence            5788999999999999999998662 111  1111  0111111222 788999999999999999997

>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*

Probab=86.74  E-value=1.2  Score=37.03  Aligned_cols=71  Identities=10%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC---------CC---CCCCCHHHHHHHHHHHHHCCCcE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD---------VD---PLFGDMHDFEILIEEAHSRGKPK  117 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~---------vd---~~~Gt~~~~~~lv~~ah~~Gi~v  117 (136)
                      -+.+.+++.|+.++..++|.+++---=.   .+|.+.+..|-.         +.   ..+=|.+|++++++-|+++||+|
T Consensus       196 ~~~~~ik~~id~mA~~KlN~lH~HltDd---qgwriei~~~P~Lt~~Ga~~~~~~~~~g~YT~~di~eIv~YA~~rgI~V  272 (525)
T 3gh5_A          196 FTVDEVKRQIDLASQYKINKFHMHLSDD---QGWRIEIKSWPDLIEIGSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEV  272 (525)
T ss_dssp             CCHHHHHHHHHHHHTTTCCEEEEECBCS---SCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHTTTCEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEeccC---CccccccccchhhhhccCccccCCCCCCCcCHHHHHHHHHHHHHcCCEE
Confidence            4688899999999999999998843211   112222222111         11   11227899999999999999999


Q ss_pred             EE----eccC
Q psy12953        118 RT----FREV  123 (136)
Q Consensus       118 il----~nh~  123 (136)
                      |-    +-|+
T Consensus       273 IPEID~PGH~  282 (525)
T 3gh5_A          273 IPEIDMPGHT  282 (525)
T ss_dssp             EEECCCSSSC
T ss_pred             EEEecccchH
Confidence            99    5555

>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}

Probab=86.10  E-value=0.92  Score=36.97  Aligned_cols=66  Identities=11%  Similarity=0.012  Sum_probs=47.5

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCC--CCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLF--GDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~--Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-.+..+-++++|+.-+.+..=+..+..-|.=..++|...+..+  +..+=+++|+++|+++||++-+
T Consensus        60 d~~~w~~~~k~aGaky~v~t~kHHdGf~lw~s~~t~~~~~~sp~~~~~~D~v~e~~~A~r~~gl~~g~  127 (443)
T 3gza_A           60 NTDQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQPGI  127 (443)
T ss_dssp             CHHHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEEEE
T ss_pred             CHHHHHHHHHHcCCCEEEEeeEeCCCcccCCCCCCCcccccCCccCCCcCHHHHHHHHHHHcCCeEEE
Confidence            34556779999999999998877665433333345554444333  2357799999999999999999

>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect, beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne brassicae} SCOP: c.1.8.4

Probab=86.06  E-value=0.94  Score=37.06  Aligned_cols=66  Identities=9%  Similarity=0.026  Sum_probs=44.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccC--CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||++++-++=-+..  |....|  ..|       .-..+-+.+++++++++||++++ ..|-.
T Consensus        56 D~Y~~~~eDi~lm~~~G~~~~R~sisWsRi~P~g~~g--~~n-------~~Gl~~y~~~id~l~~~GI~p~vtL~H~d  124 (464)
T 1wcg_A           56 DSYHKYKEDVAIIKDLNLKFYRFSISWARIAPSGVMN--SLE-------PKGIAYYNNLINELIKNDIIPLVTMYHWD  124 (464)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEEEECCHHHHSTTSCTT--SCC-------HHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chHHhhHHHHHHHHHhCCCeEEecccHHHhCCCCCCC--CcC-------HHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            44667788899999999999999753321  111001  111       11235689999999999999999 66643

>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A

Probab=85.45  E-value=4.2  Score=34.49  Aligned_cols=61  Identities=7%  Similarity=-0.028  Sum_probs=43.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcC--CccCCCCCCCCCccCCCCCC--CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQP--FYPAGGADLGYDVSNYVDVD--PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~P--i~~~~~~~~gY~~~d~~~vd--~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+.+.+.+.++.++..++|.+++--  -++..         +|-.+.  ..+=|.+|++++|+-|.++||+||-
T Consensus        99 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~~ei~---------~~P~l~~~~~~YT~~di~eiv~yA~~rgI~VIP  163 (627)
T 2epl_X           99 LNLSSAKKMIEVLALMGYSTFELYMEDTYEIE---------NQPYFGYFRGRYTVAELQEIEDYAADFDMSFVP  163 (627)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEEECSSCBCCT---------TCTTTTTTTTCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEeecccccC---------CCcccCccCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence            4678999999999999999997631  11111         111110  0112789999999999999999998

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A*

Probab=85.44  E-value=1.3  Score=35.85  Aligned_cols=65  Identities=8%  Similarity=0.048  Sum_probs=42.9

Q ss_pred             HHHHHhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC----CHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         53 RGITEKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG----DMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        53 ~~l~~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G----t~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .+..+.|..++ ++|++.|-+.-.+...-.  -|....   .+ .-|    +...+.++++.|+++||++++ .||+
T Consensus        33 ~~~~e~l~~~~~~~G~~~vR~~~~w~D~~~--~~~~~~---~~-~~g~~~~n~~~~D~~~~~~~~~Gi~p~v~l~~~  103 (503)
T 1w91_A           33 KEYLDHLKLVQEKIGFRYIRGHGLLSDDVG--IYREVE---ID-GEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFM  103 (503)
T ss_dssp             HHHHHHHHHHHHHTCCSEEECSCTTSTTTC--CEEEEE---SS-SSEEEEECCHHHHHHHHHHHHTTCEEEEEECSB
T ss_pred             HHHHHHHHHHHHhcCCeEEEeccCcCCCce--Eeeccc---cc-CCCceeeccHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            56677888887 899999998765542100  000000   01 111    135788999999999999999 8874

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=84.89  E-value=3.6  Score=30.53  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFA  128 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~  128 (136)
                      ..++-+.+-+..++++|++.|.+.-+.+...-                 +.+..++|+++|+  |+.|.+  |.+++..
T Consensus        73 ~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~i-----------------D~~~~~~Li~~a~--~~~vTF--HRAFD~~  130 (224)
T 2bdq_A           73 LELRIMEEDILRAVELESDALVLGILTSNNHI-----------------DTEAIEQLLPATQ--GLPLVF--HMAFDVI  130 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECCBCTTSSB-----------------CHHHHHHHHHHHT--TCCEEE--CGGGGGS
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeECCCCCc-----------------CHHHHHHHHHHhC--CCeEEE--ECchhcc
Confidence            35777778889999999999999888765431                 2467999998876  899999  8887765

>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus circulans} SCOP: c.1.8.4

Probab=83.87  E-value=1.1  Score=36.38  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=44.3

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      ..-+....+-++-+++||++++-++=-+..-... .|  ..|       .-..+-+.+++++|+++||++++ ..|-
T Consensus        54 ~d~Y~~~~eDi~lm~~~G~~~~R~si~W~ri~P~G~g--~~n-------~~Gl~~y~~~id~l~~~gI~p~vtL~h~  121 (449)
T 1qox_A           54 CDSYHRVEEDVQLLKDLGVKVYRFSISWPRVLPQGTG--EVN-------RAGLDYYHRLVDELLANGIEPFCTLYHW  121 (449)
T ss_dssp             TCTTSCHHHHHHHHHHHTCSEEEEECCHHHHSTTSSS--SCC-------HHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             cchhhhhHHHHHHHHhcCCCeEEecCcHHHhCcCCCC--CcC-------HHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            3446667888999999999999997433211100 11  111       11235689999999999999999 5554

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=83.78  E-value=1.2  Score=32.92  Aligned_cols=48  Identities=13%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ++.+.++.++++|++.|.+.+....             .     -+.++.+++.+.+.+.||++..
T Consensus        22 ~l~~~l~~~~~~G~~~vEl~~~~~~-------------~-----~~~~~~~~~~~~l~~~gl~~~~   69 (290)
T 3tva_A           22 GLGVHLEVAQDLKVPTVQVHAPHPH-------------T-----RTREHAQAFRAKCDAAGIQVTV   69 (290)
T ss_dssp             SSSBCHHHHHHTTCSEEEEECCCGG-------------G-----CSHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCC-------------c-----CCHHHHHHHHHHHHHcCCEEEE
Confidence            4567888999999999999873211             0     1367899999999999999988

>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*

Probab=83.78  E-value=6.3  Score=33.84  Aligned_cols=67  Identities=12%  Similarity=0.091  Sum_probs=43.5

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -+-+.+.+.++.++++|++.+.|--=+-....++--...|+ .+| .+|-  +.|+.|++.+|++||+.-+
T Consensus       343 ~~e~~i~~~ad~aa~lG~e~fviDDGWf~~r~~d~~~lGdW-~~d~~kFP--~Glk~Lad~vh~~GmkfGL  410 (729)
T 4fnq_A          343 FNEEKLVNIAKTEAELGIELFVLDDGWFGKRDDDRRSLGDW-IVNRRKLP--NGLDGLAKQVNELGMQFGL  410 (729)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEECSCCBTTCCSTTSCTTCC-SBCTTTCT--THHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHhcCccEEEEcceeecCCCCCcccCCcE-EEChhhcC--ccHHHHHHHHHHCCCEEEE
Confidence            34577888889999999999998543322211110011222 223 2232  4799999999999999988

>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*

Probab=83.72  E-value=4.7  Score=32.56  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=45.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCC-------------------------C-CCCCCCCHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV-------------------------D-VDPLFGDMHDF  103 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~-------------------------~-vd~~~Gt~~~~  103 (136)
                      -+...+.+.|+.++..++|.+++- +.+.   +|.+.+.+|-                         . ....+=|.+|+
T Consensus        22 ~~~~~ik~~ID~mA~~KlN~lH~H-ltDd---gwriei~~~pl~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~YT~~di   97 (442)
T 2yl5_A           22 FTLNQLKRIVDKASELGYSDVHLL-LGND---GLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEV   97 (442)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEE-EESS---SBCBCCSCCCEEETTEEECHHHHHHHHHHHHHHHCCCTTCSCBCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcEEEEE-EcCC---CcceeccCCcceeceeecccccccccccCCccccccCCCCCCcCHHHH
Confidence            468899999999999999998763 1111   1222222211                         0 11122278999


Q ss_pred             HHHHHHHHHCCCcEEE
Q psy12953        104 EILIEEAHSRGKPKRT  119 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil  119 (136)
                      +++|+-|.++||+||-
T Consensus        98 ~eIv~YA~~rgI~VIP  113 (442)
T 2yl5_A           98 TELIEYAKSKDIGLIP  113 (442)
T ss_dssp             HHHHHHHHTTTCEEEE
T ss_pred             HHHHHHHHHcCCeeee
Confidence            9999999999999998

>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A*

Probab=83.06  E-value=1.5  Score=36.01  Aligned_cols=67  Identities=12%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||+++.-++=-+..-.. .|..     .+|  --..+=..+|+++++++||+.++ ..|-.
T Consensus        67 D~YhrY~eDi~lm~elG~~~yRfsI~WsRI~P-~g~g-----~~N--~~Gl~~Y~~lid~l~~~GI~P~vTL~H~d  134 (488)
T 3gnp_A           67 DQYHRFEEDIQLMADMGMDAYRFSIAWSRIYP-NGVG-----QVN--QAGIDHYNKLIDALLAKGIQPYVTLYHWD  134 (488)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCHHHHCT-TSSS-----SCC--HHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chhhhHHHHHHHHHHcCCCEEEecccHHHeee-CCCC-----CcC--HHHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            34666788899999999999998742221110 0100     010  01134478999999999999999 66644

>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}

Probab=82.96  E-value=4.5  Score=34.84  Aligned_cols=61  Identities=7%  Similarity=-0.028  Sum_probs=41.8

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCC-CCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADL-GYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~-gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +...+.+.|+.++..+.|.+++-+- +.+.  + +..- +.+..    -+.++++++++.|+++||+|+.
T Consensus       164 ~~~~~~~~id~ma~~K~N~~h~hl~-Dd~~--~~~~wr-~~y~~----~~~~~~~elv~ya~~rgI~vv~  225 (737)
T 2v5d_A          164 THQDRLDQIKFYGENKLNTYIYAPK-DDPY--HREKWR-EPYPE----SEMQRMQELINASAENKVDFVF  225 (737)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECCCS-CCST--TTTTC------C----TTHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHhCCeEEEEecc-cccc--hhhccC-cCCCH----HHHHHHHHHHHHHHHCCCEEEE
Confidence            4688899999999999999998642 2111  1 1010 11111    1367999999999999999995

>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA; 1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*

Probab=82.91  E-value=1.1  Score=36.70  Aligned_cols=67  Identities=12%  Similarity=0.153  Sum_probs=45.1

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccC--CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      ..-+....+-++-+++||++++-++=-+..  |....|  .       ...-..+-+.+++++++++||++++ ..|-.
T Consensus        53 ~D~Y~~~~eDi~lm~~~G~~~~R~sisWsRi~P~g~~g--~-------~n~~Gl~~y~~lid~l~~~GI~p~vtL~H~d  122 (469)
T 2e9l_A           53 CGSYTLWEEDLKCIKQLGLTHYRFSLSWSRLLPDGTTG--F-------INQKGIDYYNKIIDDLLKNGVTPIVTLYHFD  122 (469)
T ss_dssp             TCTTTCHHHHHHHHHHHTCSEEEEECCHHHHSTTSSTT--S-------CCHHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             ccHHHHHHHHHHHHHHhCCCeEEccccHhhcccCCCCC--C-------cCHHHHHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            345667788899999999999999743221  111001  1       1112235689999999999999999 55543

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=82.89  E-value=4.9  Score=30.40  Aligned_cols=59  Identities=19%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN  129 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~  129 (136)
                      ..++-+.+-+..++++|++.|.+.-+.+.+.-                 +.+..++|+++|+  |+.|.+  |.+++...
T Consensus        70 ~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~i-----------------D~~~~~~Li~~a~--~~~vTF--HRAfD~~~  128 (256)
T 1twd_A           70 GEFAAILEDVRTVRELGFPGLVTGVLDVDGNV-----------------DMPRMEKIMAAAG--PLAVTF--HRAFDMCA  128 (256)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECCBCTTSSB-----------------CHHHHHHHHHHHT--TSEEEE--CGGGGGCS
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeECCCCCc-----------------CHHHHHHHHHHhC--CCcEEE--ECchhccC
Confidence            35777778889999999999999888765431                 2467899998875  889999  88777653

>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor, PEST defense, family GH1, hydrolase, chloroplast, transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays} SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A* 1e1e_A 1e1f_A* 1h49_A* 1hxj_A

Probab=82.60  E-value=1.9  Score=35.75  Aligned_cols=66  Identities=9%  Similarity=0.107  Sum_probs=44.1

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCC---CCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~---gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||++++-++=-+..-....   |       .+|  --..+-+.+++++++++||++++ ..|-.
T Consensus        75 D~Y~~~~eDi~lm~~~G~~~~R~sisWsRi~P~g~~~g-------~~n--~~G~~~y~~lid~l~~~GI~p~vtL~H~d  144 (512)
T 1v08_A           75 NSYHMYKTDVRLLKEMGMDAYRFSISWPRILPKGTKEG-------GIN--PDGIKYYRNLINLLLENGIEPYVTIFHWD  144 (512)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEECCHHHHSTTSSTTT-------CCC--HHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chHHHHHHHHHHHHHhCCCeEecccCHhhhCCCCCcCC-------CcC--HHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3466778889999999999999974332111000   1       011  01245689999999999999999 55543

>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase; 2.30A {Escherichia coli}

Probab=82.43  E-value=1.7  Score=35.71  Aligned_cols=63  Identities=8%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccC--CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      +....+-++.++++|++++-++=-+..  |..+.|       .+|  --..+-+.++|++|+++||++++ ..|-
T Consensus        70 Y~~~~eDi~lm~~~G~~~~R~sisW~Ri~P~G~~g-------~~n--~~gl~~yd~lid~l~~~GI~pivtL~H~  135 (479)
T 2xhy_A           70 YGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA-------QPN--EEGLKFYDDMFDELLKYNIEPVITLSHF  135 (479)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCHHHHSSSSCCS-------SCC--HHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             hhhhHHHHHHHHHcCCCEEEeeCCHHHhCCCCCCC-------CcC--HHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            456677899999999999998643321  110011       011  11245689999999999999999 6664

>4hz8_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosid barrel, carbohydrate/sugar binding; HET: BGC; 1.14A {Uncultured bacterium} PDB: 4hz7_A* 4hz6_A* 3fj0_A* 3cmj_A 3fiz_A* 3fiy_A*

Probab=82.14  E-value=1.6  Score=35.50  Aligned_cols=66  Identities=14%  Similarity=0.194  Sum_probs=44.2

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||++++-++=-+..-... .|       .+|+  ...+-..+++++++++||++++ ..|-.
T Consensus        55 D~Yhry~eDi~l~~~lG~~~~R~si~W~Ri~P~g~g-------~~N~--~gl~~Y~~lid~l~~~GI~p~vtL~H~d  122 (444)
T 4hz8_A           55 DHYHRYEQDLDLMRQLGLKTYRFSIAWARIQPDSSR-------QINQ--RGLDFYRRLVEGLHKRDILPMATLYHWD  122 (444)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEEEECCHHHHSCSTTC-------CCCH--HHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chhhhHHHHHHHHHhcCCCEEEEeccHHHcCcCCCC-------CcCH--HHHHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            336667888999999999999986433221100 01       1111  1235579999999999999999 66643

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=81.79  E-value=6.3  Score=28.55  Aligned_cols=21  Identities=19%  Similarity=0.427  Sum_probs=18.4

Q ss_pred             HHHHhHHHHHHcCCcEEEEcC
Q psy12953         54 GITEKLDHFVDLGIESLWIQP   74 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~P   74 (136)
                      .+.+.++.++++|++.|.+.+
T Consensus        15 ~~~~~~~~~~~~G~~~vEl~~   35 (270)
T 3aam_A           15 GVAGAVEEATALGLTAFQIFA   35 (270)
T ss_dssp             HHHHHHHHHHHHTCSCEEEES
T ss_pred             cHHHHHHHHHHcCCCEEEEeC
Confidence            688889999999999999943

>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A 1bgg_A* 1bga_A 1uyq_A*

Probab=81.75  E-value=1.9  Score=35.09  Aligned_cols=65  Identities=12%  Similarity=0.163  Sum_probs=43.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .-+....+-++-+++||++++-++=-+..-... .|  .     +|  -...+-+.+++++|+++||++++ ..|-
T Consensus        55 d~Yh~y~eDi~lm~~~G~~~~R~si~W~Ri~P~G~g--~-----~n--~~Gl~~y~~lid~l~~~GI~p~vtL~H~  121 (447)
T 1e4i_A           55 DSYHRYEEDIRLMKELGIRTYRFSVSWPRIFPNGDG--E-----VN--QKGLDYYHRVVDLLNDNGIEPFCTLYHW  121 (447)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEEEECCHHHHSTTSSS--C-----CC--HHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             chhhccHHHHHHHHHcCCCeEEecCcHHHhccCCCC--C-----cC--HHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            446667888999999999999996533221100 11  1     11  11145689999999999999999 5554

>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*

Probab=81.56  E-value=11  Score=32.19  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=41.8

Q ss_pred             HHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCcc----CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         55 ITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVS----NYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        55 l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~----d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      -.+.++.|+++.||.|.+=-.+-......+- ..    .+..+..|-=..+-+|.+|++||++||+-|.
T Consensus       142 ~~~~i~~L~~yHIN~~QFYDW~yrHh~P~~~-~~~~~~~W~D~~~R~i~~~tVk~yI~~ah~~gm~aM~  209 (643)
T 3vmn_A          142 YYRELEQMKNMNINSYFFYDVYKSATNPFPN-VPKFDQSWNWWSHSQVETDAVKALVNRVHQTGAVAML  209 (643)
T ss_dssp             HHHHHHHHHHTTCCEEEETTCCSBTTBCSCS-SSEEECTTCTTTCCEEEHHHHHHHHHHHHHTTCEEEE
T ss_pred             hHHHHHHHHhcCcCeEEeeeecccccCcCCC-CCccccccccccCCEehHHHHHHHHHHHHHcCchhhh
Confidence            3567899999999999985443322111110 11    1222233333468899999999999999999

>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*

Probab=81.02  E-value=6.4  Score=32.93  Aligned_cols=63  Identities=22%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             CHHHHHHhHHHH-----HHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCC-CCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHF-----VDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPL-FGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l-----~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~-~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.++.+     +++|++.|.|--=+.....+ .  ..|+ .+||. |-  +.++.|++.+|++|+++.+
T Consensus        27 ~~~~~~~~ad~~~~~g~~~~G~~~~~iDdgW~~~~~d-~--~g~~-~~~~~~fP--~gl~~l~~~i~~~Glk~gi   95 (614)
T 3a21_A           27 DYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRD-S--AGNI-TVDTAEWP--GGMSAITAYIHSKGLKAGI   95 (614)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHTCCEEECCTTSCCSCBC-T--TCCB-CCCTTTST--TCHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCHHhhCCEEEEECCCcCCCCcC-C--CCCE-EECccccC--CcHHHHHHHHHHCCCeeEE
Confidence            456677777775     89999999883322211100 0  1233 45543 63  2599999999999999988

>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis; 2.35A {Pyrococcus furiosus}

Probab=80.83  E-value=2  Score=35.22  Aligned_cols=71  Identities=14%  Similarity=0.108  Sum_probs=44.6

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCC--C--------------------C---CCCHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVD--P--------------------L---FGDMHDFE  104 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd--~--------------------~---~Gt~~~~~  104 (136)
                      .-+....+-++-+++||++++-++=-+..-....|..    ..+|  .                    +   -...+-++
T Consensus        57 d~Y~~y~eDi~l~~~lG~~~~R~si~WsRI~P~~g~~----~~~n~~~~~~~~~~~~~~~~~~l~~l~~~an~~g~~~Y~  132 (473)
T 3apg_A           57 AYWHLYKQDHDIAEKLGMDCIRGGIEWARIFPKPTFD----VKVDVEKDEEGNIISVDVPESTIKELEKIANMEALEHYR  132 (473)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEECCHHHHCCSCCTT----SCCEEEECTTSCEEEEECCHHHHHHHHHHSCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHcCCCEEEEecchhhccccCCCC----CCcccccccccccccccchhhHHHHHHhhhhHHHHHHHH
Confidence            4466678889999999999999964322111111100    0111  0                    0   11145678


Q ss_pred             HHHHHHHHCCCcEEE-eccCC
Q psy12953        105 ILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus       105 ~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      +++++++++||++++ .+|-+
T Consensus       133 ~~id~l~~~Gi~pivtL~H~~  153 (473)
T 3apg_A          133 KIYSDWKERGKTFILNLYHWP  153 (473)
T ss_dssp             HHHHHHHTTTCEEEEESCCSC
T ss_pred             HHHHHHHHCCCEEEEEeCCCC
Confidence            999999999999999 66643

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=80.42  E-value=3.8  Score=29.88  Aligned_cols=43  Identities=12%  Similarity=0.164  Sum_probs=34.0

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ++.+.++.++++|++.|.+....            +           .+.+++.+.+.+.||++..
T Consensus        24 ~~~~~l~~~~~~G~~~vEl~~~~------------~-----------~~~~~~~~~l~~~gl~~~~   66 (269)
T 3ngf_A           24 PFLERFRLAAEAGFGGVEFLFPY------------D-----------FDADVIARELKQHNLTQVL   66 (269)
T ss_dssp             CHHHHHHHHHHTTCSEEECSCCT------------T-----------SCHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHcCCCEEEecCCc------------c-----------CCHHHHHHHHHHcCCcEEE
Confidence            57788889999999999997421            0           1367788888899999986

>4ba0_A Alpha-glucosidase, putative, ADG31B; hydrolase; HET: 5GF PGE ARG; 1.85A {Cellvibrio japonicus} PDB: 4b9z_A* 4b9y_A*

Probab=80.14  E-value=15  Score=32.12  Aligned_cols=63  Identities=8%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             CHHHHHHhHHHHHHcCC--cEEEEcCCccCCCCCCCCCccCCCCCC-CCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGI--ESLWIQPFYPAGGADLGYDVSNYVDVD-PLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~--~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+++.+.++.+++.||  +.+|+---+-.......+  .| +..| .+|-++   ++|++.+|++|+++++
T Consensus       275 s~~ev~~vv~~~r~~~IP~Dvi~lD~dw~g~d~~~~~--gd-ftwd~~~FPdp---~~mv~~Lh~~G~k~vl  340 (817)
T 4ba0_A          275 SEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKGHM--GN-LDWDKENFPTP---LDMMADFKQQGVKTVL  340 (817)
T ss_dssp             SHHHHHHHHHHHHHHTCCCCEEEECGGGSCSSSSSCT--TC-CSCCTTTCSCH---HHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEcccccCCcccccc--Cc-cccccccCCCH---HHHHHHHHHCCCEEEE
Confidence            56788889999999998  999987422111000011  12 2445 356654   7999999999999999

>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*

Probab=80.07  E-value=4  Score=32.89  Aligned_cols=66  Identities=15%  Similarity=0.096  Sum_probs=43.6

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCC-------------------------C-CCCCCCCCHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNY-------------------------V-DVDPLFGDMHDF  103 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~-------------------------~-~vd~~~Gt~~~~  103 (136)
                      =+.+.+.+.|+.++..++|.+++- +.+.   +|.+.+.++                         . .....+=|.+|+
T Consensus        19 ~~~~~ik~~ID~mA~~KlN~lH~H-LtDd---gwr~ei~~~pl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~YT~~di   94 (434)
T 2yl6_A           19 FSPEQLKEIIDKAKHYGYTDLHLL-VGND---GLRFMLDDMSITANGKTYASDDVKRAIEKGTNDYYNDPNGNHLTESQM   94 (434)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEE-EESS---SBCEECSCCCEEETTEEECHHHHHHHHHHHHHHHCCCTTCSCEEHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCeEEEE-ecCC---CcccccCCCceeeeeeccccccchhhhhcCCccccCCCCCCccCHHHH
Confidence            467889999999999999998762 1110   111111111                         0 011222368999


Q ss_pred             HHHHHHHHHCCCcEEE
Q psy12953        104 EILIEEAHSRGKPKRT  119 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil  119 (136)
                      +++|+-|.++||+||-
T Consensus        95 ~eIv~YA~~rgI~VIP  110 (434)
T 2yl6_A           95 TDLINYAKDKGIGLIP  110 (434)
T ss_dssp             HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHcCCEEEE
Confidence            9999999999999998

>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*

Probab=80.07  E-value=5.7  Score=33.48  Aligned_cols=61  Identities=8%  Similarity=0.065  Sum_probs=42.3

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +...+.+.++.++..+.|.+++-+-=+... ..|   ...|. .    -+.++++++++.|+++||+|+.
T Consensus       164 ~~~~ik~~id~ma~~KlN~~h~Hl~DDq~~~~~w---r~~Yp-~----~~~~~i~elv~yA~~rgI~vv~  225 (594)
T 2v5c_A          164 THQDRLDQIKFYGENKLNTYIYAPKDDPYHREKW---REPYP-E----SEMQRMQELINASAENKVDFVF  225 (594)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECCTTCGGGTTTT---TSCCC-G----GGHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHhCCcEEEEecccCccccccc---CCCCC-H----HHHHHHHHHHHHHHHCCcEEEE
Confidence            468889999999999999999865221100 111   01111 1    1267999999999999999995

>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4 PDB: 3pbg_A 2pbg_A 4pbg_A*

Probab=80.01  E-value=2.6  Score=34.40  Aligned_cols=66  Identities=14%  Similarity=0.147  Sum_probs=43.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||++++-++=-+..-... .|       .+|  --..+-+.+++++++++||++++ ..|-.
T Consensus        51 D~Yh~y~eDi~lm~~~G~~~~R~sisWsRi~P~G~g-------~~N--~~gl~~y~~lid~l~~~GI~p~vtL~H~d  118 (468)
T 1pbg_A           51 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYG-------EVN--EKGVEFYHKLFAECHKRHVEPFVTLHHFD  118 (468)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEECCHHHHSTTSSS-------SCC--HHHHHHHHHHHHHHHHHTCEEEEEEESSC
T ss_pred             cccccCHHHHHHHHHhCCCEEEeccCHhhhccCCCC-------CcC--HHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Confidence            345667888999999999999987432211100 01       011  01234579999999999999999 55643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1uoka2	479	c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus	6e-36
d1m53a2	478	c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Kle	1e-35
d1lwha2	391	c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Ther	2e-29
d1wzaa2	409	c.1.8.1 (A:28-436) Bacterial alpha-amylase {Haloth	1e-27
d1gjwa2	572	c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga	6e-24
d1g5aa2	554	c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysacc	8e-23
d1eh9a3	400	c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrol	3e-22
d1iv8a2	653	c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase	3e-21
d1j0ha3	382	c.1.8.1 (A:124-505) Neopullulanase, central domain	3e-21
d1h3ga3	422	c.1.8.1 (A:96-517) Cyclomaltodextrinase, central d	5e-21
d1wzla3	382	c.1.8.1 (A:121-502) Maltogenic amylase, central do	5e-21
d1bf2a3	475	c.1.8.1 (A:163-637) Isoamylase, central domain {Ps	1e-19
d1ht6a2	347	c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hor	2e-19
d2bhua3	420	c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydro	2e-19
d1r7aa2	434	c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobac	3e-19
d1ea9c3	382	c.1.8.1 (C:122-503) Maltogenic amylase, central do	3e-18
d2aaaa2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	2e-17
d1m7xa3	396	c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enz	2e-17
d2guya2	381	c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergill	4e-17
d1ji1a3	432	c.1.8.1 (A:123-554) Maltogenic amylase, central do	4e-17
d1qhoa4	407	c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase	3e-16
d3bmva4	406	c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase	8e-16
d1e43a2	393	c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera	8e-15
d1ud2a2	390	c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillu	3e-14
d1hvxa2	393	c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillu	4e-14
d2d3na2	394	c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillu	2e-13
d1gcya2	357	c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan m	1e-12
d1mxga2	361	c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeo	2e-12
d2fhfa5	563	c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella p	4e-12
d1ua7a2	344	c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillu	2e-10
d1g94a2	354	c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoa	1e-07
d1hx0a2	403	c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus s	3e-07
d1jaea2	378	c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mea	9e-06

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} Length = 479

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

 Score =  126 bits (316), Expect = 6e-36
 Identities = 44/91 (48%), Positives = 63/91 (69%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL 83
           +K+WW+ +++YQIYPRSF D NGDG GD+RGI  KLD+  +LGI+ +W+ P Y +   D 
Sbjct: 2   EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDN 61

Query: 84  GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           GYD+S+Y  +   FG M D++ L+ E H R 
Sbjct: 62  GYDISDYCKIMNEFGTMEDWDELLHEMHERN 92

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} Length = 478

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

 Score =  125 bits (314), Expect = 1e-35
 Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 2/94 (2%)

Query: 21  ELPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG 80
           E P   WW+ A+ YQIYPRSF+D N DG GD+RGI EKLD+   LGI+++WI P Y +  
Sbjct: 1   EYP--AWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPN 58

Query: 81  ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            D GYD+SNY  +   +G M DF+ L+ E   R 
Sbjct: 59  TDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRN 92

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} Length = 391

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

 Score =  107 bits (268), Expect = 2e-29
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 32  IMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV 91
           I YQIY RSFRD N DG GD RG+   + +  +LGI+ +W+ P +    +  GYDV ++ 
Sbjct: 2   IGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFS-SISFHGYDVVDFY 60

Query: 92  DVDPLFGDMHDFEILIEEAHSRG 114
                +G   +F+ +IE  H  G
Sbjct: 61  SFKAEYGSEREFKEMIEAFHDSG 83

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} Length = 409

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

 Score =  102 bits (255), Expect = 1e-27
 Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 9/96 (9%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPA 78
           + +    Y+I+ RSF D +GDG GD++GI EKLD+          DLG+  +W+ P + +
Sbjct: 1   FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKS 60

Query: 79  GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
                GYDV++Y  ++P +G + DF  L+E AH RG
Sbjct: 61  PSYH-GYDVTDYYKINPDYGTLEDFHKLVEAAHQRG 95

>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 572

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltosyltransferase
species: Thermotoga maritima [TaxId: 2336]

 Score = 93.9 bits (232), Expect = 6e-24
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDG--------------TGDMRGITEKLDHFVDLGIESLW 71
           +W + +++Y   PR+    N  G               G    +   L     LG ++++
Sbjct: 79  DWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIY 138

Query: 72  IQPFYPA------GGADLGYDVSNYVDVDPL--------FGDMHDFEILIEEAHSRG 114
           + P          G A   Y V N +++D          F    +F+  +E  H  G
Sbjct: 139 LLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILG 195

>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} Length = 554

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylosucrase
species: Neisseria polysaccharea [TaxId: 489]

 Score = 90.4 bits (223), Expect = 8e-23
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 26  EWW--QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGA 81
           +W      +    Y   F        GD++G+ +K+ +F +LG+  L + P +  P G +
Sbjct: 91  DWILSNKQVGGVCYVDLF-------AGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKS 143

Query: 82  DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           D GY VS+Y DV+P  G + D   +I   H  G
Sbjct: 144 DGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} Length = 400

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYP-AGGADLGY 85
             +  I+Y+I+  +F        G   G+  KLD+  DLGI ++ I P     G  D GY
Sbjct: 8   KKEDLIIYEIHVGTFTP-----EGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGY 62

Query: 86  DVSNYVDVDPLFGDMHDFEILIEEAHSRGK 115
           D      V   +G    F  L++EAH +G 
Sbjct: 63  DGVYLYAVQNSYGGPEGFRKLVDEAHKKGL 92

>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 653

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltooligosyl trehalose synthase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 50  GDMRGITEKLDHFVDLGIESLWIQP-FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE 108
            +   + + L +F DLG+  L++ P    + G++ GYDV ++  ++   G   ++  LIE
Sbjct: 14  FNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIE 73

Query: 109 EAHSRG 114
            AH+ G
Sbjct: 74  TAHTIG 79

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 20/107 (18%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT-------------------GDMRGITEKLDHFVDLG 66
           +W +  + YQI+P  F + N   +                   GD++GI + LD+ VDLG
Sbjct: 7   DWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLG 66

Query: 67  IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           I  +++ P +    ++  YD ++Y +VDP FGD    + LI+  H +
Sbjct: 67  ITGIYLTPIFR-SPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEK 112

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]} Length = 422

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

 Score = 85.2 bits (209), Expect = 5e-21
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 22/112 (19%)

Query: 24  QKEWWQTAIMYQIYPRSFRDVN-------------------GDGTGDMRGITEKLDHFVD 64
           ++ +     +YQI P  F + +                   G   GD+RG  + LD+   
Sbjct: 5   RQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAG 64

Query: 65  LGIESLWIQPFYP---AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           LG   LW  P      A  +  GY  +++  +DP +G   DF  L  EA  R
Sbjct: 65  LGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKR 116

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

 Score = 84.7 bits (208), Expect = 5e-21
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 21/108 (19%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT--------------------GDMRGITEKLDHFVDL 65
           EW + A++YQI+P  F + +                        GD++G+ ++L +  +L
Sbjct: 6   EWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEEL 65

Query: 66  GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           G+ +L+  P + +      YD ++Y+ +DP FGD+  F  L++EAH R
Sbjct: 66  GVTALYFTPIFASPSHH-KYDTADYLAIDPQFGDLPTFRRLVDEAHRR 112

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} Length = 475

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

 Score = 81.6 bits (200), Expect = 1e-19
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 24/112 (21%)

Query: 27  WWQTAIMYQIYPRSFRD----VNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYP----- 77
             +  ++Y+++ R F +    +     G   G   K  +   LG+ ++   P        
Sbjct: 13  AQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDA 72

Query: 78  --------AGGADLGYDVSNYVDVDPLF-------GDMHDFEILIEEAHSRG 114
                   A     GY   NY   D  +       G   +F+ +++  H+ G
Sbjct: 73  NDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAG 124

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} Length = 347

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

 Score = 80.0 bits (196), Expect = 2e-19
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 34  YQIYPRSF-RDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD 92
           +Q+  + F  +      G    +  K+D     G+  +W+ P   +   + GY      D
Sbjct: 1   HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNE-GYMPGRLYD 59

Query: 93  VDP-LFGDMHDFEILIEEAH 111
           +D   +G+  + + LI   H
Sbjct: 60  IDASKYGNAAELKSLIGALH 79

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} Length = 420

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 80.2 bits (196), Expect = 2e-19
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYP-AGGA 81
                    + Y+++  +F        G  R   EKL +  +LG+ ++ + P     G  
Sbjct: 9   WHGIKLADCVFYEVHVGTFTP-----EGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQR 63

Query: 82  DLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111
             GYD + +      +G   D   L++ AH
Sbjct: 64  GWGYDGAAFYAPYAPYGRPEDLMALVDAAH 93

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]} Length = 434

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

 Score = 80.2 bits (196), Expect = 3e-19
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 29  QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDV 87
           +  +    Y          G G ++ +T+ L    D   + + I PF+    GAD G+D 
Sbjct: 2   KNKVQLITYADRL------GDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDP 55

Query: 88  SNYVDVDPLFGDMHDFEILIEEAH 111
            ++  VD   G   D   L +  +
Sbjct: 56  IDHTKVDERLGSWDDVAELSKTHN 79

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} Length = 382

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

 Score = 77.1 bits (188), Expect = 3e-18
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 20/107 (18%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT-------------------GDMRGITEKLDHFVDLG 66
            W + AI YQI+P  F + +                       GD++G+ + LDH   LG
Sbjct: 5   AWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLG 64

Query: 67  IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           + +++  P +     +  YD  +Y  +DP FGD    + L++  H R
Sbjct: 65  VNAVYFTPLFK-ATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHER 110

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

 Score = 75.1 bits (183), Expect = 2e-17
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQP 74
            W+T  +Y +    F   +   T            G  +GI + LD+   +G  ++WI P
Sbjct: 5   SWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISP 64

Query: 75  FYPA-------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111
                      G A  GY      DV+  FG   + + L +  H
Sbjct: 65  ITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDALH 108

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} Length = 396

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

 Score = 75.0 bits (183), Expect = 2e-17
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 34  YQIYPRSF-RDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGGAD-LGYDVSNY 90
           Y+++  S+ R  + +     R + ++L  +   +G   L + P          GY  +  
Sbjct: 20  YEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGL 79

Query: 91  VDVDPLFGDMHDFEILIEEAH 111
                 FG   DF   I+ AH
Sbjct: 80  YAPTRRFGTRDDFRYFIDAAH 100

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} Length = 381

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

 Score = 73.9 bits (180), Expect = 4e-17
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 19/104 (18%)

Query: 27  WWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQP 74
            W++  +Y +    F   +G  T            G  +GI +KLD+   +G  ++WI P
Sbjct: 5   DWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITP 64

Query: 75  FYP-------AGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAH 111
                      G A  GY   +   ++  +G   D + L    H
Sbjct: 65  VTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALH 108

>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]} Length = 432

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

 Score = 74.4 bits (181), Expect = 4e-17
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 38/130 (29%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDG------------------------------------T 49
           +W +  +MYQI+P  F + +                                        
Sbjct: 6   DWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFG 65

Query: 50  GDMRGITEKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIE 108
           GD+ GI +KL +    LG   L++ P +     +  YD  +Y+ VDP FGD    + LI 
Sbjct: 66  GDLAGIDQKLGYIKKTLGANILYLNPIFK-APTNHKYDTQDYMAVDPAFGDNSTLQTLIN 124

Query: 109 EAHSRGKPKR 118
           + HS     +
Sbjct: 125 DIHSTANGPK 134

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} Length = 407

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

 Score = 71.7 bits (174), Expect = 3e-16
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 29/117 (24%)

Query: 26  EWWQTAIMYQIYPRSFRDVNGDGT---------------------GDMRGITEKLDHFVD 64
              +  ++YQI    F D +                         GD+ G+ +KL +   
Sbjct: 4   ASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQ 63

Query: 65  LGIESLWIQPFYPAGGADL--------GYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           LG+ ++W+ P                 GY   ++  ++  FG+   F+ L+ +AH  
Sbjct: 64  LGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQN 120

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} Length = 406

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

 Score = 70.1 bits (170), Expect = 8e-16
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 32/122 (26%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGT------------------GDMRGITEKLD--HF 62
                + T ++YQI    F D N                      GD +GI  K++  + 
Sbjct: 7   SNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYL 66

Query: 63  VDLGIESLWIQP------------FYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA 110
             +G+ ++WI               +    +  GY   ++   +P FG   DF+ LI  A
Sbjct: 67  TGMGVTAIWIPQPVENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTA 126

Query: 111 HS 112
           H+
Sbjct: 127 HA 128

>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} Length = 393

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]

 Score = 67.3 bits (163), Expect = 8e-15
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 43  DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
               DG    + +    +H  D+GI ++WI P Y     +D GY   +  D         
Sbjct: 12  YTPNDG-QHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGT 70

Query: 93  VDPLFGDMHDFEILIEEAHSRG 114
           V   +G   + +  I   HSR 
Sbjct: 71  VRTKYGTKSELQDAIGSLHSRN 92

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} Length = 390

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

 Score = 65.9 bits (159), Expect = 3e-14
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 11/83 (13%)

Query: 43  DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
            +  DG      + +      D GI ++WI P Y     AD+GY   +  D         
Sbjct: 14  HLENDG-QHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGT 72

Query: 93  VDPLFGDMHDFEILIEEAHSRGK 115
           V   +G     E  I    S   
Sbjct: 73  VRTKYGTKAQLERAIGSLKSNDI 95

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} Length = 393

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 65.4 bits (158), Expect = 4e-14
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 47  DGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD---------VDPL 96
           D       +  + ++   LGI +LW+ P Y     +D+GY V +  D         V   
Sbjct: 18  DDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTK 77

Query: 97  FGDMHDFEILIEEAHSRG 114
           +G    +   I+ AH+ G
Sbjct: 78  YGTKAQYLQAIQAAHAAG 95

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} Length = 394

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

 Score = 63.5 bits (153), Expect = 2e-13
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 43  DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVD--------- 92
            +  DG      +     +    GI ++WI P +      D+GY   +  D         
Sbjct: 12  YLPNDG-NHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGT 70

Query: 93  VDPLFGDMHDFEILIEEAHSRG 114
           V   +G     +  +    + G
Sbjct: 71  VRTKYGTRSQLQAAVTSLKNNG 92

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} Length = 357

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

 Score = 61.1 bits (147), Expect = 1e-12
 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 34  YQIYPRSFR-DVNGDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPAGGADL-------- 83
            +I  + F  +V  +   D    + ++       G  ++W+   +    +          
Sbjct: 16  DEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGG 75

Query: 84  -GYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
            GY   ++ + +  +G               G
Sbjct: 76  EGYFWHDF-NKNGRYGSDAQLRQAASALGGAG 106

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 361

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

 Score = 60.7 bits (146), Expect = 2e-12
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 47  DGTGDMRGITEKLDHFVDLGIESLWIQPFY--PAGGADLGYDVSNYVD---------VDP 95
            G      I  K+  + + GI ++W+ P     +GG  +GYD  +Y D         V+ 
Sbjct: 22  GGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVET 81

Query: 96  LFGDMHDFEILIEEAHSRG 114
            FG   +   LI+ AH+ G
Sbjct: 82  RFGSKEELVRLIQTAHAYG 100

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} Length = 563

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 59.8 bits (143), Expect = 4e-12
 Identities = 8/105 (7%), Positives = 22/105 (20%), Gaps = 13/105 (12%)

Query: 23  PQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRG-----------ITEKLDHFVDLGIESLW 71
             K       +++ + R     +     ++RG           + + L      G+  + 
Sbjct: 14  KTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIE 73

Query: 72  IQPF--YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG 114
           + P                       L       +      +   
Sbjct: 74  LLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDS 118

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]} Length = 344

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

 Score = 55.3 bits (132), Expect = 2e-10
 Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 10/69 (14%)

Query: 53  RGITEKLDHFVDLGIESLWIQPFYPAGGADL----------GYDVSNYVDVDPLFGDMHD 102
             +   +    D G  ++   P       +            Y  ++Y   +   G   +
Sbjct: 17  NTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQE 76

Query: 103 FEILIEEAH 111
           F+ +   A 
Sbjct: 77  FKEMCAAAE 85

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} Length = 354

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 57  EKLDHFVDLGIESLWIQPFY---PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSR 113
           E   +    G  ++ + P             Y   +Y ++    G+   F  ++    + 
Sbjct: 19  ECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAA 77

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 403

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.7 bits (107), Expect = 3e-07
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 57  EKLDHFVDLGIESLWIQPFY-------PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEE 109
           E   +    G   + + P         P+      Y   +Y  +    G+ ++F  ++  
Sbjct: 27  ECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNENEFRDMVTR 85

Query: 110 AHSRG 114
            ++ G
Sbjct: 86  CNNVG 90

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} Length = 378

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

 Score = 41.4 bits (96), Expect = 9e-06
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 7/68 (10%)

Query: 53  RGITEKLDHFV-DLGIESLWIQPFY-----PAGGADLGYDVSNYVDVDPLFGDMHDFEIL 106
             I ++ + F+   G   + I P               Y   +Y  ++   GD   F  +
Sbjct: 22  NDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IINTRSGDESAFTDM 80

Query: 107 IEEAHSRG 114
               +  G
Sbjct: 81  TRRCNDAG 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1m53a2	478	Isomaltulose synthase PalI {Klebsiella sp., lx3 [T	100.0
d1uoka2	479	Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13	100.0
d1ea9c3	382	Maltogenic amylase, central domain {Bacillus sp.,	100.0
d1j0ha3	382	Neopullulanase, central domain {Bacillus stearothe	99.98
d1ji1a3	432	Maltogenic amylase, central domain {Thermoactinomy	99.98
d1bf2a3	475	Isoamylase, central domain {Pseudomonas amyloderam	99.98
d1h3ga3	422	Cyclomaltodextrinase, central domain {Flavobacteri	99.97
d1wzla3	382	Maltogenic amylase, central domain {Thermoactinomy	99.97
d1qhoa4	407	Cyclodextrin glycosyltransferase {Bacillus stearot	99.97
d3bmva4	406	Cyclodextrin glycosyltransferase {Thermoanaerobact	99.97
d1m7xa3	396	1,4-alpha-glucan branching enzyme, central domain	99.97
d2fhfa5	563	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	99.97
d1eh9a3	400	Glycosyltrehalose trehalohydrolase, central domain	99.97
d2guya2	381	Fungal alpha-amylases {Aspergillus oryzae, Taka-am	99.97
d1lwha2	391	4-alpha-glucanotransferase {Thermotoga maritima [T	99.97
d1gjwa2	572	Maltosyltransferase {Thermotoga maritima [TaxId: 2	99.97
d1wzaa2	409	Bacterial alpha-amylase {Halothermothrix orenii [T	99.97
d2aaaa2	381	Fungal alpha-amylases {Aspergillus niger, acid amy	99.97
d2bhua3	420	Glycosyltrehalose trehalohydrolase, central domain	99.97
d1ht6a2	347	Plant alpha-amylase {Barley (Hordeum vulgare), AMY	99.95
d1g5aa2	554	Amylosucrase {Neisseria polysaccharea [TaxId: 489]	99.95
d1r7aa2	434	Sucrose phosphorylase {Bifidobacterium adolescenti	99.93
d1mxga2	361	Bacterial alpha-amylase {Archaeon Pyrococcus woese	99.92
d1gcya2	357	G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase	99.92
d1ud2a2	390	Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta	99.92
d1ua7a2	344	Bacterial alpha-amylase {Bacillus subtilis [TaxId:	99.92
d1e43a2	393	Bacterial alpha-amylase {Chimera (Bacillus amyloli	99.91
d2d3na2	394	Bacterial alpha-amylase {Bacillus sp. 707 [TaxId:	99.9
d1hvxa2	393	Bacterial alpha-amylase {Bacillus stearothermophil	99.9
d1iv8a2	653	Maltooligosyl trehalose synthase {Archaeon Sulfolo	99.88
d1g94a2	354	Bacterial alpha-amylase {Pseudoalteromonas halopla	99.87
d1jaea2	378	Animal alpha-amylase {Yellow mealworm (Tenebrio mo	99.86
d1hx0a2	403	Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982	99.84
d1ecea_	358	Endocellulase E1 {Acidothermus cellulolyticus [Tax	97.17
d1uuqa_	410	Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}	97.03
d2c0ha1	350	endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed	96.94
d2pb1a1	394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	96.86
d1hjsa_	332	Beta-1,4-galactanase {Thielavia heterothallica, ak	96.77
d1qnra_	344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	96.73
d1wkya2	297	Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449	96.71
d1edga_	380	Endoglucanase CelA {Clostridium cellulolyticum [Ta	96.7
d1h4pa_	408	Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom	96.64
d1rh9a1	370	Beta-mannanase {Tomato (Lycopersicon esculentum) [	96.51
d1vjza_	325	Endoglucanase homologue TM1752 {Thermotoga maritim	96.44
d1ceoa_	340	Endoglucanase CelC {Clostridium thermocellum [TaxI	96.35
d1eswa_	500	Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]}	96.34
d1ur4a_	387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	96.29
d1foba_	334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	96.18
d1kwga2	393	A4 beta-galactosidase {Thermus thermophilus [TaxId	95.92
d1bqca_	302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	95.9
d1g01a_	357	Alkaline cellulase K catalytic domain {Bacillus sp	95.81
d1x1na1	523	Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax	95.78
d1tz7a1	485	Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]	95.71
d1nowa1	353	beta-hexosaminidase B {Human (Homo sapiens) [TaxId	95.54
d7a3ha_	300	Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId	95.51
d1h1na_	305	Endocellulase EngI {Thermoascus aurantiacus [TaxId	95.3
d1tg7a5	354	Beta-galactosidase LacA, N-terminal domain {Penici	95.26
d2ebfx2	219	Dermonecrotic toxin, ToxA {Pasteurella multocida [	95.14
d1tvna1	293	Endoglucanase Cel5a {Pseudoalteromonas haloplankti	94.67
d2gjxa1	362	beta-hexosaminidase A {Human (Homo sapiens) [TaxId	94.5
d1egza_	291	Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId:	94.23
d1qbaa3	443	Bacterial chitobiase (beta-N-acetylhexosaminidase)	94.2
d1hl9a2	350	Putative alpha-L-fucosidase, catalytic domain {The	94.0
d1yhta1	344	Dispersin B, DspB {Actinobacillus actinomycetemcom	93.18
d1x7fa2	244	Outer surface protein, N-terminal domain {Bacillus	93.06
d1jaka1	356	beta-N-acetylhexosaminidase {Streptomyces plicatus	92.23
d1vema2	417	Bacterial beta-amylase {Bacillus cereus [TaxId: 13	91.83
d1zy9a2	348	Alpha-galactosidase GalA catalytic domain {Thermot	91.6
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	90.84
d2f2ha4	338	Putative glucosidase YicI, domain 2 {Escherichia c	88.72
d2hvma_	273	Hevamine A (chitinase/lysozyme) {Para rubber tree	87.11
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	85.27
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	84.14
d2j78a1	443	Beta-glucosidase A {Thermotoga maritima [TaxId: 23	83.88
d1e4ia_	447	Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406	83.62
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	82.71
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	82.15
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	81.95
d1gnxa_	464	Beta-glucosidase A {Streptomyces sp. [TaxId: 1931]	81.85
d1vffa1	423	Beta-glucosidase A {Archaeon Pyrococcus horikoshii	81.82
d2fhfa5	563	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	81.62
d1wcga1	462	Thioglucosidase {Cabbage aphid (Brevicoryne brassi	80.97
d1ug6a_	426	Beta-glucosidase A {Thermus thermophilus [TaxId: 2	80.9
d1cbga_	490	Plant beta-glucosidase (myrosinase) {Creeping whit	80.71
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	80.52
d2vzsa5	339	Exochitosanase CsxA {Amycolatopsis orientalis [Tax	80.29

>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isomaltulose synthase PalI
species: Klebsiella sp., lx3 [TaxId: 576]

Probab=100.00  E-value=3.6e-36  Score=241.71  Aligned_cols=106  Identities=42%  Similarity=0.849  Sum_probs=102.2

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      .|+||++.|||||++++|.++++++.|||+|++++|+||++||||+|||+||++++..+|||++.||++|||+|||+++|
T Consensus         2 ~P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df   81 (478)
T d1m53a2           2 YPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDF   81 (478)
T ss_dssp             CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHH
T ss_pred             CCcccccCeEEEEecchhcCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcCcccCCHHHH
Confidence            48999999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ++||++||++||+||+   +||++.+|+.
T Consensus        82 ~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~  110 (478)
T d1m53a2          82 DSLVAEMKKRNMRLMIDVVINHTSDQHPW  110 (478)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             HHHHHHHHHCCCEEEeccccccccccCch
Confidence            9999999999999999   9999987654

>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Oligo-1,6, glucosidase
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=8.9e-36  Score=239.47  Aligned_cols=106  Identities=42%  Similarity=0.865  Sum_probs=102.4

Q ss_pred             CccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHH
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      .++||++.|||||++++|.+++++++|||+|++++|+||++||||+|||+||++++..+|||++.||++|||+|||++||
T Consensus         2 ~~~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df   81 (479)
T d1uoka2           2 EKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMEDW   81 (479)
T ss_dssp             CCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHH
T ss_pred             CchhhccCeEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHcCCCEEEECCCcCCCCCCCCcCccccCCcCcccCCHHHH
Confidence            47899999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ++||++||++||+||+   +||++.+|+.
T Consensus        82 ~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~  110 (479)
T d1uoka2          82 DELLHEMHERNMKLMMDLVVNHTSDEHNW  110 (479)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSBCCTTSHH
T ss_pred             HHHHHHHHHCCCEEEecccccccccccch
Confidence            9999999999999999   9999988754

>d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]

Probab=100.00  E-value=2e-33  Score=219.99  Aligned_cols=105  Identities=30%  Similarity=0.706  Sum_probs=97.9

Q ss_pred             CccccCCceEEEEecccccCcCCCC-------------------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCC
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDG-------------------TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLG   84 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~-------------------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~g   84 (136)
                      +|+||++.+||||++++|.+++.++                   +|||++++++|+|||+||||+|||+||+++++ ++|
T Consensus         3 ~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~-~~g   81 (382)
T d1ea9c3           3 PPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATT-NHK   81 (382)
T ss_dssp             CCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSS-SST
T ss_pred             CCccccCCeEEEEEcchhcCCCCCCCccCcccccccCCCcCccCCcCHHHHHHhhHHHHhCCCCEEEeCCCccCCC-CCC
Confidence            4799999999999999999877543                   59999999999999999999999999998765 699


Q ss_pred             CCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        85 Y~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      |++.||++|||+|||.+||++||++||++||+||+   +||++.+|+.
T Consensus        82 Y~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~  129 (382)
T d1ea9c3          82 YDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPP  129 (382)
T ss_dssp             TSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHH
T ss_pred             CCcccccccccccCCHHHHHHHHHHHHhhcceEEEeeecccccccCcc
Confidence            99999999999999999999999999999999999   9999988763

>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Neopullulanase, central domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.98  E-value=2.6e-33  Score=219.84  Aligned_cols=106  Identities=33%  Similarity=0.697  Sum_probs=98.5

Q ss_pred             CCccccCCceEEEEecccccCcCCCC-------------------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCC
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDG-------------------TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADL   83 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~-------------------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~   83 (136)
                      .+|+||++.+||||++++|.++++++                   +|||++++++|+||++||||+|||+||+++++ ++
T Consensus         4 ~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~-~~   82 (382)
T d1j0ha3           4 EAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPS-NH   82 (382)
T ss_dssp             CCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS-SS
T ss_pred             CCCcchhCCEEEEEEcchhcCCCCCCCccccccccccCCccCccCCcCHHHHHHhHHHHHHcCCCEEEeCCCCcCCc-cc
Confidence            46899999999999999999877543                   39999999999999999999999999999875 69


Q ss_pred             CCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        84 gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ||++.||++|||+|||+++|++||++||++||+||+   +||++.+|+.
T Consensus        83 gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~  131 (382)
T d1j0ha3          83 KYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAP  131 (382)
T ss_dssp             CCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHH
T ss_pred             CCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeeeccccccccc
Confidence            999999999999999999999999999999999999   9999988754

>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=99.98  E-value=2.2e-33  Score=223.15  Aligned_cols=108  Identities=31%  Similarity=0.593  Sum_probs=98.9

Q ss_pred             CCccccCCceEEEEecccccCcCCCC------------------------------------CCCHHHHHHhHHHHHH-c
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDG------------------------------------TGDMRGITEKLDHFVD-L   65 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~------------------------------------~g~~~~l~~~l~~l~~-l   65 (136)
                      ++|+||++++||||+|++|.+++.++                                    +|||+|++++|+||++ |
T Consensus         3 ~~p~W~~~~viY~i~~drF~dgd~~nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~kLdYl~~~L   82 (432)
T d1ji1a3           3 KTPDWLKNGVMYQIFPDRFYNGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVFFGGDLAGIDQKLGYIKKTL   82 (432)
T ss_dssp             CCCHHHHHCCEEEECGGGTCCSCGGGCCCTTSCEETTEECEECCTTSCCSCCTTSCGGGEECCCCHHHHHHTHHHHHTTT
T ss_pred             CCCccccCCeEEEEeccccCCCCCccccccccccccCCccccccccccccccccccccccccCcCHHHHHHHhhHHHhhc
Confidence            67999999999999999998776432                                    5999999999999997 9


Q ss_pred             CCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCC----CcEEE---eccCCCccCCCC
Q psy12953         66 GIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRG----KPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        66 G~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~G----i~vil---~nh~~~~~~~~~  131 (136)
                      |||+|||+||++++. ++||++.||++|||+|||.+||++||++||++|    |+||+   +||++.+|+..+
T Consensus        83 Gv~~I~L~Pi~~~~~-~~GY~~~d~~~id~~~Gt~~d~~~lv~~~H~~g~~~~I~VilD~V~NH~s~~~~~~~  154 (432)
T d1ji1a3          83 GANILYLNPIFKAPT-NHKYDTQDYMAVDPAFGDNSTLQTLINDIHSTANGPKGYLILDGVFNHTGDSHPWFD  154 (432)
T ss_dssp             CCCEEEESCCEECSS-SSCCSCSEEEEECTTTCCHHHHHHHHHHHHCSSSSSCCEEEEEECCSBCCTTSTTTC
T ss_pred             CCCEEEeCCCCcCCC-CCCcccccccccCcccCCHHHHHHHHHHHHHhhhhcceeEeccccccccCCCchhHh
Confidence            999999999999876 599999999999999999999999999999987    67999   999999988654

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=99.98  E-value=4.7e-33  Score=223.57  Aligned_cols=110  Identities=16%  Similarity=0.300  Sum_probs=99.9

Q ss_pred             CCCccccCCceEEEEecccccCcC----CCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-------------CCCC
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVN----GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-------------ADLG   84 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~----~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-------------~~~g   84 (136)
                      ..++.|+++.|||||++++|++++    +++.|||+|++++|+||++||||+|||+||++++.             .+||
T Consensus         8 ~~~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~G   87 (475)
T d1bf2a3           8 TKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWG   87 (475)
T ss_dssp             CCCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSC
T ss_pred             CCCCCCCcceEEEEEEhhHhccCCCCCCccccCCHHHHHhhhHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCC
Confidence            355678999999999999999876    35579999999999999999999999999998754             2489


Q ss_pred             CCccCCCCCCCCC-------CCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         85 YDVSNYVDVDPLF-------GDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        85 Y~~~d~~~vd~~~-------Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      |++.||++|||+|       ||.+||++||++||++||+||+   +||++..|+..+
T Consensus        88 Y~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~~~  144 (475)
T d1bf2a3          88 YMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTS  144 (475)
T ss_dssp             CCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSS
T ss_pred             CCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccccccCCCcccc
Confidence            9999999999999       9999999999999999999999   999999887664

>d1h3ga3 c.1.8.1 (A:96-517) Cyclomaltodextrinase, central domain {Flavobacterium sp. 92 [TaxId: 197856]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclomaltodextrinase, central domain
species: Flavobacterium sp. 92 [TaxId: 197856]

Probab=99.97  E-value=5.6e-33  Score=220.18  Aligned_cols=108  Identities=28%  Similarity=0.485  Sum_probs=97.7

Q ss_pred             CCccccCCceEEEEecccccCcC-------------------CCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC---
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVN-------------------GDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG---   80 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~-------------------~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~---   80 (136)
                      ..+.||++.+||||++++|.+++                   +..+|||+|++++|+||++||||+|||+||++++.   
T Consensus         4 ~~~~~~~~~viY~i~~~~F~~gd~~nd~~~~~~~~~~~~~~~~~~gGd~~Gl~~kLdyl~~LGv~~I~l~Pi~~~~~~~~   83 (422)
T d1h3ga3           4 QRQGFGPGDAIYQIMPDRFANGDPSNDNVAGMREQADRRHGGGRHGGDIRGTIDHLDYIAGLGFTQLWPTPLVENDAAAY   83 (422)
T ss_dssp             TCCCCCTTCCEEEECHHHHCCSCGGGSSCTTCSSCCCTTSTTSCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECCCSSC
T ss_pred             ccCCCCCCCcEEEeChhhccCCCCCcCccCCccccccccccCCCCCcCHHHHHHhHHHHHHCCCCEEEeCCcccCCCCCC
Confidence            44669999999999999998765                   23359999999999999999999999999998753   


Q ss_pred             CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         81 ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        81 ~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      .++||++.||++|||+|||.+||++||++||++||+||+   +||++.+|++.
T Consensus        84 ~~~GY~~~d~~~vd~~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~  136 (422)
T d1h3ga3          84 SYHGYAATDHYRIDPRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIGKHHWWM  136 (422)
T ss_dssp             GGGCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSGGG
T ss_pred             CCCCCCccccCCcccccCCHHHHHHHHHHHHHhCccccccCccccccccchhh
Confidence            468999999999999999999999999999999999999   99999888653

>d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltogenic amylase, central domain
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=99.97  E-value=8.9e-33  Score=216.52  Aligned_cols=106  Identities=31%  Similarity=0.713  Sum_probs=98.1

Q ss_pred             CCccccCCceEEEEecccccCcCCCC--------------------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDG--------------------TGDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD   82 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~--------------------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~   82 (136)
                      ++|+||++.+|||+++++|++++.++                    +|||++++++|+|||+||||+|||+||++++. +
T Consensus         3 ~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~-~   81 (382)
T d1wzla3           3 TTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPS-H   81 (382)
T ss_dssp             CCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS-S
T ss_pred             CCCccccCCEEEEEEcchhcCCCCCCCCccccccccccccccCCCCCcCHHHHHHhhHHHHHCCCCEEEECCcCCCCc-c
Confidence            46899999999999999998776432                    49999999999999999999999999999875 6


Q ss_pred             CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         83 LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        83 ~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      +||++.||+++||+|||.++|++||++||++||+||+   +||++.+|+.
T Consensus        82 ~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~  131 (382)
T d1wzla3          82 HKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFA  131 (382)
T ss_dssp             SCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHH
T ss_pred             cCCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeeeccccccccc
Confidence            9999999999999999999999999999999999999   8999987765

>d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=99.97  E-value=6e-33  Score=220.19  Aligned_cols=108  Identities=24%  Similarity=0.448  Sum_probs=96.7

Q ss_pred             CCccccCCceEEEEecccccCcCCCC---------------------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-
Q psy12953         23 PQKEWWQTAIMYQIYPRSFRDVNGDG---------------------TGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-   80 (136)
Q Consensus        23 ~~~~w~~~~~iY~v~~~~f~~~~~~~---------------------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-   80 (136)
                      +++.||++.|||||++++|.++++.+                     +|||+|++++|+||++||||+|||+||++++. 
T Consensus         1 ~~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~   80 (407)
T d1qhoa4           1 SSSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT   80 (407)
T ss_dssp             CTTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred             CCchhhcCCEEEEechhhhcCCCCCCCcccccccccCCcccccCccCCcCHHHHHHHHHHHHHcCCCEEEeCccccCCcc
Confidence            36899999999999999998766432                     49999999999999999999999999998642 


Q ss_pred             -------CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         81 -------ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        81 -------~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                             .++||++.||++|||+|||.+||++||++||++||+||+   +||++..|+..
T Consensus        81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~  140 (407)
T d1qhoa4          81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKAND  140 (407)
T ss_dssp             CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTB
T ss_pred             cCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccceeeccccccccCCcccc
Confidence                   358999999999999999999999999999999999999   99998766543

>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Cyclodextrin glycosyltransferase
species: Thermoanaerobacterium [TaxId: 28895]

Probab=99.97  E-value=4.9e-33  Score=220.39  Aligned_cols=113  Identities=23%  Similarity=0.432  Sum_probs=100.6

Q ss_pred             cCCCCCccccCCceEEEEecccccCcCCCC------------------CCCHHHHHHhHH--HHHHcCCcEEEEcCCccC
Q psy12953         19 QVELPQKEWWQTAIMYQIYPRSFRDVNGDG------------------TGDMRGITEKLD--HFVDLGIESLWIQPFYPA   78 (136)
Q Consensus        19 ~~~~~~~~w~~~~~iY~v~~~~f~~~~~~~------------------~g~~~~l~~~l~--~l~~lG~~~I~l~Pi~~~   78 (136)
                      ++....+.+|++.|||||+|++|.+++.++                  +|||+|++++|+  |||+||||+|||+||++.
T Consensus         3 ~~~~~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~~~   82 (406)
T d3bmva4           3 DTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPVEN   82 (406)
T ss_dssp             TTSTTCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCEEE
T ss_pred             CcccCCCCCCccCeEEEechhhccCCCCCCCCCCCccCCCCCccCccCCcCHHHHHHhcCHHHHHHcCCCEEEECCcccc
Confidence            445667889999999999999998776433                  699999999999  999999999999999874


Q ss_pred             ------------CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         79 ------------GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        79 ------------~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                                  +..++||++.||++|||+|||.+||++||++||++||+||+   +||++..|+...
T Consensus        83 ~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~  150 (406)
T d3bmva4          83 IYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDP  150 (406)
T ss_dssp             CCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCT
T ss_pred             cccccCCCCCCCChhhcCcccccccccCcccccHHHHHHHHHHHHhccccceeeeecccccccccchh
Confidence                        23468999999999999999999999999999999999999   999988776543

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.6e-33  Score=214.21  Aligned_cols=105  Identities=17%  Similarity=0.182  Sum_probs=95.8

Q ss_pred             ccCCceEEEEeccccc-CcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHH
Q psy12953         27 WWQTAIMYQIYPRSFR-DVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~-~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      |-+..+|||+++++|+ ++++++.|+|+|++++| |||++||||+|||+||++++. .+|||++.||++|||+|||.+||
T Consensus        13 ~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vdp~~Gt~~d~   92 (396)
T d1m7xa3          13 FDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDF   92 (396)
T ss_dssp             TTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHH
T ss_pred             CCCCcEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcCcccCCHHHH
Confidence            3344589999999996 67788889999999996 999999999999999999876 56899999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      ++||++||++||+||+   +||++..|....
T Consensus        93 ~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~  123 (396)
T d1m7xa3          93 RYFIDAAHAAGLNVILDWVPGHFPTDDFALA  123 (396)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTSCCCSTTSST
T ss_pred             HHHHHHHhhhhhhhhhcccccccCCcccccc
Confidence            9999999999999999   999998887653

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.97  E-value=8.8e-33  Score=224.23  Aligned_cols=111  Identities=13%  Similarity=0.255  Sum_probs=98.8

Q ss_pred             CCCccccCCceEEEEecccccCcCCCCCCCHHH-----------HHHhHHHHHHcCCcEEEEcCCccCCC----------
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGDGTGDMRG-----------ITEKLDHFVDLGIESLWIQPFYPAGG----------   80 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~-----------l~~~l~~l~~lG~~~I~l~Pi~~~~~----------   80 (136)
                      ..++.||++.||||||+++|+++++++.|+++|           ++++|+||++||||+|||+||+++++          
T Consensus        13 ~~~~~~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL~Pi~~~~~~d~~~~~~~~   92 (563)
T d2fhfa5          13 QKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDLATVNEFSDKVAD   92 (563)
T ss_dssp             CSSHHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEESSSCCCGGGCCC
T ss_pred             cCCCCCHHHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhhHHHHHHcCCCEEEeCCcccCCccccccccccc
Confidence            345679999999999999999998888765555           89999999999999999999988654          


Q ss_pred             ------------------------------------------------------------CCCCCCccCCCCCCCCCCC-
Q psy12953         81 ------------------------------------------------------------ADLGYDVSNYVDVDPLFGD-   99 (136)
Q Consensus        81 ------------------------------------------------------------~~~gY~~~d~~~vd~~~Gt-   99 (136)
                                                                                  ++|||++.||++|||+||| 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~dy~~i~p~~Gt~  172 (563)
T d2fhfa5          93 IQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATD  172 (563)
T ss_dssp             TTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEEEEEEECSTTSSC
T ss_pred             cccccccccccccccchhhhhhhccccchhhhhhhcccccccchhhhhhcccccccccCcCCCCCChhhcccccCccCcC
Confidence                                                                        2469999999999999999 


Q ss_pred             ------HHHHHHHHHHH-HHCCCcEEE---eccCCCccCCCCC
Q psy12953        100 ------MHDFEILIEEA-HSRGKPKRT---FREVTKSFANNQG  132 (136)
Q Consensus       100 ------~~~~~~lv~~a-h~~Gi~vil---~nh~~~~~~~~~~  132 (136)
                            .+|||+||++| |++||+||+   +||++..|++++.
T Consensus       173 ~d~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~wf~~  215 (563)
T d2fhfa5         173 PEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRT  215 (563)
T ss_dssp             CSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTT
T ss_pred             cchhhHHHHHHHHHHHHhhccCceeeecCcccccCCCCCchhh
Confidence                  68899999987 899999999   9999999998753

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=99.97  E-value=1.8e-31  Score=209.89  Aligned_cols=98  Identities=30%  Similarity=0.440  Sum_probs=92.2

Q ss_pred             cCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHHHHH
Q psy12953         28 WQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEIL  106 (136)
Q Consensus        28 ~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~l  106 (136)
                      .++.||||||+++|+++     |||+|++++|+||++||||+|||+||++++. .+|||++.||++|||+|||++||++|
T Consensus         9 ~~~~viYe~~v~~f~~~-----Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dlk~l   83 (400)
T d1eh9a3           9 KEDLIIYEIHVGTFTPE-----GTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKL   83 (400)
T ss_dssp             SSSCCEEEECTTTSSSS-----CSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHHHHH
T ss_pred             CcCeEEEEEehhhhCCC-----CCHHHHHHHhHHHHHcCCCEEEeCCcCcCCCCCCCCCCCCCCCCcCcccCCHHHHHHH
Confidence            44799999999999875     9999999999999999999999999999875 67999999999999999999999999


Q ss_pred             HHHHHHCCCcEEE---eccCCCccCCC
Q psy12953        107 IEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       107 v~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      |++||++||+||+   +||++.+|+..
T Consensus        84 v~~~h~~gi~VilD~V~NH~s~~~~~~  110 (400)
T d1eh9a3          84 VDEAHKKGLGVILDVVYNHVGPEGNYM  110 (400)
T ss_dssp             HHHHHHTTCEEEEEECCSCCCSSSCCH
T ss_pred             HHHHHhcCCceeeecccccccCCCcch
Confidence            9999999999999   99999988754

>d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]

Probab=99.97  E-value=3.8e-32  Score=214.84  Aligned_cols=108  Identities=23%  Similarity=0.406  Sum_probs=97.6

Q ss_pred             CccccCCceEEEEecccccCcCCCCC------------CCHHHHHHhHHHHHHcCCcEEEEcCCccCC-------CCCCC
Q psy12953         24 QKEWWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQPFYPAG-------GADLG   84 (136)
Q Consensus        24 ~~~w~~~~~iY~v~~~~f~~~~~~~~------------g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-------~~~~g   84 (136)
                      +|..|++.+|||+++++|.++++++.            |||+|++++|+||++||||+|||+||+++.       ..++|
T Consensus         2 ~p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~g   81 (381)
T d2guya2           2 TPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHG   81 (381)
T ss_dssp             CHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTS
T ss_pred             CCccccCCeEEEEEcchhcCCCCCCCCCCCCccCccCCcCHHHHHHhHHHHHHCCCCEEEeCCCCCCCcccCCCCCCCCC
Confidence            45567889999999999999887764            999999999999999999999999999863       24689


Q ss_pred             CCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         85 YDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        85 Y~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      |++.||+++||+|||.+||++||++||++||+||+   +||++.+|+...
T Consensus        82 Y~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~  131 (381)
T d2guya2          82 YWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSS  131 (381)
T ss_dssp             CSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGG
T ss_pred             cccccccccccCCCCHHHHHHHHHHHHhhccceeeeccccccccccCccc
Confidence            99999999999999999999999999999999999   999998776544

>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 4-alpha-glucanotransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=9.5e-32  Score=211.20  Aligned_cols=98  Identities=33%  Similarity=0.575  Sum_probs=93.4

Q ss_pred             ceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q psy12953         31 AIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEA  110 (136)
Q Consensus        31 ~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~a  110 (136)
                      .|+|||++++|.+++++|.|||+|++++|+||++||||+|||+||+++.. +|||++.||++|||+|||.+||++||++|
T Consensus         1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~-~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~   79 (391)
T d1lwha2           1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSIS-FHGYDVVDFYSFKAEYGSEREFKEMIEAF   79 (391)
T ss_dssp             CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSS-SSCCSCSEEEEECGGGCCHHHHHHHHHHH
T ss_pred             CEEEEEccccccCCCCCCccCHHHHHHhhHHHHHcCCCEEEECCCCCCCC-CCCCCccCCCCcCcccCCHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999875 59999999999999999999999999999


Q ss_pred             HHCCCcEEE---eccCCCccCC
Q psy12953        111 HSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       111 h~~Gi~vil---~nh~~~~~~~  129 (136)
                      |++||+||+   +||++.+|+.
T Consensus        80 h~~gi~VilD~V~NH~~~~~~~  101 (391)
T d1lwha2          80 HDSGIKVVLDLPIHHTGFLHTW  101 (391)
T ss_dssp             HHTTCEEEEEECTTBCCTTSHH
T ss_pred             HhcCCEEeeccccccccccccc
Confidence            999999999   9999987654

>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltosyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=3.6e-32  Score=222.50  Aligned_cols=109  Identities=20%  Similarity=0.327  Sum_probs=98.7

Q ss_pred             CCCccccCCceEEEEecccccCcCCCC--------------CCCHHHHHHhHHHHHHcCCcEEEEcCCccCC------CC
Q psy12953         22 LPQKEWWQTAIMYQIYPRSFRDVNGDG--------------TGDMRGITEKLDHFVDLGIESLWIQPFYPAG------GA   81 (136)
Q Consensus        22 ~~~~~w~~~~~iY~v~~~~f~~~~~~~--------------~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~------~~   81 (136)
                      ..+|+||+++||||+|+++|+++++++              +||++|++++|+|||+||||+|||+||++.+      ..
T Consensus        75 ~~~p~w~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~  154 (572)
T d1gjwa2          75 EKTPDWIKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDA  154 (572)
T ss_dssp             CCSGGGGGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSS
T ss_pred             CCCCccccCcEEEEEechhhcCCCCCCCcccccCcccCccCCCCHHHHHHhhHHHHHcCCCEEEeCCcccCccccCCCCC
Confidence            556899999999999999999877654              4999999999999999999999999999753      35


Q ss_pred             CCCCCccCCCCCCCC--------CCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         82 DLGYDVSNYVDVDPL--------FGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        82 ~~gY~~~d~~~vd~~--------~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      +|||++.||+.+||+        +||.+||++||++||++||+||+   +||++.+|+..
T Consensus       155 ~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~  214 (572)
T d1gjwa2         155 PSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLI  214 (572)
T ss_dssp             CCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGG
T ss_pred             CCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHHHhcCcEEEEEeeecccccCCHHH
Confidence            799999999999986        79999999999999999999999   99999887654

>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Halothermothrix orenii [TaxId: 31909]

Probab=99.97  E-value=1.3e-31  Score=209.99  Aligned_cols=101  Identities=37%  Similarity=0.779  Sum_probs=95.5

Q ss_pred             ccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHH--------HHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC
Q psy12953         27 WWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHF--------VDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG   98 (136)
Q Consensus        27 w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l--------~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G   98 (136)
                      |-++++||||++++|+++++++.|||+|++++|+||        |+||||+|||+||+++++ +|||++.||++|||+||
T Consensus         1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~-~~GY~~~d~~~vd~~~G   79 (409)
T d1wzaa2           1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPS-YHGYDVTDYYKINPDYG   79 (409)
T ss_dssp             CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSS-SSCCSCSEEEEECGGGC
T ss_pred             CCCccEEEEEecchhcCCCCCCCcCHHHHHHhccccccccccHHhhcCccEEEECCCCCCCC-CCCcCcccCCCcCcccC
Confidence            347899999999999999999999999999999998        799999999999999876 59999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      |.+||++||++||++||+||+   +||++.+|+
T Consensus        80 ~~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~  112 (409)
T d1wzaa2          80 TLEDFHKLVEAAHQRGIKVIIDLPINHTSERHP  112 (409)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECCCSBCCTTSH
T ss_pred             CHHHHHHHHHHHHhcCCEEEEecccccccccCc
Confidence            999999999999999999999   999988774

>d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Fungal alpha-amylases
species: Aspergillus niger, acid amylase [TaxId: 5061]

Probab=99.97  E-value=1.8e-31  Score=211.11  Aligned_cols=107  Identities=24%  Similarity=0.410  Sum_probs=96.3

Q ss_pred             ccccCCceEEEEecccccCcCCCCC------------CCHHHHHHhHHHHHHcCCcEEEEcCCccCC-------CCCCCC
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNGDGT------------GDMRGITEKLDHFVDLGIESLWIQPFYPAG-------GADLGY   85 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~~~~------------g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-------~~~~gY   85 (136)
                      +.+|++.+||||++++|.++++++.            |||+|++++|+||++||||+|||+||+++.       ..++||
T Consensus         3 ~~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~gY   82 (381)
T d2aaaa2           3 AASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGY   82 (381)
T ss_dssp             HHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTTSC
T ss_pred             chhhCCCcEEEEEeCcccCCCCCCCCCCCCCcCCcCCcCHHHHHHHHHHHHHcCCCEEEeCCCccCCccCCCCCCCCccc
Confidence            4566999999999999998877653            999999999999999999999999999853       245899


Q ss_pred             CccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         86 DVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        86 ~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      ++.||++|||+|||.++|++||++||++||+||+   +||++.++....
T Consensus        83 ~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~  131 (381)
T d2aaaa2          83 WQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGND  131 (381)
T ss_dssp             SEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGG
T ss_pred             ccccccccccccCCHHHHHHHHHHHhhhhhcccccccccccccccCCcc
Confidence            9999999999999999999999999999999999   999998776543

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=4e-31  Score=210.11  Aligned_cols=101  Identities=21%  Similarity=0.320  Sum_probs=93.7

Q ss_pred             ccccCCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCCCCHHHH
Q psy12953         25 KEWWQTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLFGDMHDF  103 (136)
Q Consensus        25 ~~w~~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~  103 (136)
                      ..+|++.||||+++++|.++     |||+|++++|+||++||||+|||+||++.+. .+|||++.||++|||+||+.+||
T Consensus        11 ~~~~~~~viYe~~~~~f~~~-----Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G~~~d~   85 (420)
T d2bhua3          11 GIKLADCVFYEVHVGTFTPE-----GTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYGRPEDL   85 (420)
T ss_dssp             CCCGGGCCEEEECHHHHSSS-----CSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGCCHHHH
T ss_pred             CCCccccEEEEEehhhcCCC-----CCHHHHHHhHHHHHHcCCCEEEeCCCCcCCCCCCCCCCcccCCCcCcccCCHHHH
Confidence            34489999999999999865     9999999999999999999999999998765 67999999999999999999999


Q ss_pred             HHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953        104 EILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       104 ~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      ++||++||++||+||+   +||++.+|+..
T Consensus        86 ~~lv~~aH~~gi~VilD~V~NH~~~~~~~~  115 (420)
T d2bhua3          86 MALVDAAHRLGLGVFLDVVYNHFGPSGNYL  115 (420)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSCCCSSSCCH
T ss_pred             HHHHHHHHhccccccccccccccCCCCccc
Confidence            9999999999999999   89999888653

>d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Plant alpha-amylase
species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]

Probab=99.95  E-value=2.2e-29  Score=193.08  Aligned_cols=98  Identities=18%  Similarity=0.378  Sum_probs=91.9

Q ss_pred             EEEeccccc-CcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHH
Q psy12953         34 YQIYPRSFR-DVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAH  111 (136)
Q Consensus        34 Y~v~~~~f~-~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah  111 (136)
                      |||.+.+|. +++.+++|+|++++++||||++||||+|||+||+++++ ++||++.||++||| ++||+++|++||++||
T Consensus         1 ~~~~~~~f~~~~~~~~~g~~~~i~~kLdyl~~lGv~~i~L~Pi~~~~~-~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H   79 (347)
T d1ht6a2           1 HQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVS-NEGYMPGRLYDIDASKYGNAAELKSLIGALH   79 (347)
T ss_dssp             CCCEEECCCTTGGGCTTCHHHHHHTTHHHHHHTTCCEEEECCCSCBSS-TTSSSBCCTTCGGGCTTCCHHHHHHHHHHHH
T ss_pred             CeeEEeccccCcCCCCCCCHHHHHHhHHHHHHcCCCEEEECCCCcCCC-CCCCCccCcCcCCcccCCCHHHHHHHHHHHh
Confidence            788999998 88889999999999999999999999999999999986 68999999999998 6999999999999999


Q ss_pred             HCCCcEEE---eccCCCccCCCCC
Q psy12953        112 SRGKPKRT---FREVTKSFANNQG  132 (136)
Q Consensus       112 ~~Gi~vil---~nh~~~~~~~~~~  132 (136)
                      ++||+||+   +||++.+|++...
T Consensus        80 ~~gi~VilD~V~NH~~~~~~~~~~  103 (347)
T d1ht6a2          80 GKGVQAIADIVINHRCADYKDSRG  103 (347)
T ss_dssp             HTTCEEEEEECCSBCCCSEECTTS
T ss_pred             hcceEEeeeccccccCCCCccccc
Confidence            99999999   9999998887543

>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylosucrase
species: Neisseria polysaccharea [TaxId: 489]

Probab=99.95  E-value=1.7e-28  Score=203.61  Aligned_cols=102  Identities=26%  Similarity=0.521  Sum_probs=93.9

Q ss_pred             CCCccccC--CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCCCCCCC
Q psy12953         22 LPQKEWWQ--TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVDVDPLF   97 (136)
Q Consensus        22 ~~~~~w~~--~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~   97 (136)
                      ...+.|++  +.+.|+++++.|.       |||+|++++|+||++||||+|||+||++++.  .++||++.||++|||+|
T Consensus        87 ~~~~~w~~~~~~~~~~~y~~~fg-------GDl~Gi~~kLdYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vdp~l  159 (554)
T d1g5aa2          87 ENNPDWILSNKQVGGVCYVDLFA-------GDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPAL  159 (554)
T ss_dssp             HTCGGGGGCTTCCEEEECHHHHH-------SSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTT
T ss_pred             hhCCccccCcCceeEEEeccccC-------cCHHHHHHhhHHHHHcCCCEEEECCCCCCCCCCCCCCcCcccCCCCCccc
Confidence            44678986  4688999999997       9999999999999999999999999999864  67999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953         98 GDMHDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus        98 Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      ||++||++||++||++||+||+   +||++..|+++
T Consensus       160 Gt~edl~~Lv~~aH~rGI~VilD~V~NHts~~h~w~  195 (554)
T d1g5aa2         160 GTIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWA  195 (554)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHH
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEECcCCCCCCccch
Confidence            9999999999999999999999   99999888753

>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Sucrose phosphorylase
species: Bifidobacterium adolescentis [TaxId: 1680]

Probab=99.93  E-value=1e-26  Score=179.05  Aligned_cols=91  Identities=21%  Similarity=0.336  Sum_probs=82.2

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccC-CCCCCCCCccCCCCCCCCCCCHHHHHHHH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPA-GGADLGYDVSNYVDVDPLFGDMHDFEILI  107 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~-~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv  107 (136)
                      ++.|+|+++++++.      +|||+|++++||||++||||+|||+||++. +..+|||++.||++|||+|||+++|++| 
T Consensus         2 ~~~~~~~~y~d~~~------~Gdl~g~~~~Ldyl~~LGv~~I~L~Pi~~~~~~~d~GY~~~Dy~~vdp~~Gt~~d~k~L-   74 (434)
T d1r7aa2           2 KNKVQLITYADRLG------DGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDDVAEL-   74 (434)
T ss_dssp             CSSCEEEECSSSBS------SSSHHHHHHHHHHHSTTTCCEEEECCCEECSSSSSTTSSCSEEEEECTTTCCHHHHHHH-
T ss_pred             CCceEEEEecCCCC------CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCcCcccccccCcccCCHHHHHHH-
Confidence            67899999998874      399999999999999999999999999985 4478999999999999999999999999 


Q ss_pred             HHHHHCCCcEEE---eccCCCccCCC
Q psy12953        108 EEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       108 ~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                          ++||+||+   +||++..|+..
T Consensus        75 ----~rGi~VIlDvV~NHt~~~~~~~   96 (434)
T d1r7aa2          75 ----SKTHNIMVDAIVNHMSWESKQF   96 (434)
T ss_dssp             ----HTTSEEEEEEECSEEETTSHHH
T ss_pred             ----HhCCeeeEEecccccccccchh
Confidence                47999999   99998877543

>d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=99.92  E-value=6.3e-26  Score=177.70  Aligned_cols=96  Identities=21%  Similarity=0.343  Sum_probs=82.3

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCC---------CCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYV---------DVDPLF   97 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~---------~vd~~~   97 (136)
                      ++.+|+|-+...    ...+++.|++++++|+|||+||||+|||+||+++.+  .++||++.||+         +|||+|
T Consensus         8 ~~~~~~q~f~w~----~~~~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~   83 (361)
T d1mxga2           8 EGGVIMQAFYWD----VPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRF   83 (361)
T ss_dssp             GTCCEEECCCTT----CCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSS
T ss_pred             cCCEEEEeeecC----CCCCCchHHHHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCC
Confidence            567888865432    223456789999999999999999999999998644  57999999997         699999


Q ss_pred             CCHHHHHHHHHHHHHCCCcEEE---eccCCCccC
Q psy12953         98 GDMHDFEILIEEAHSRGKPKRT---FREVTKSFA  128 (136)
Q Consensus        98 Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~  128 (136)
                      ||.++|++||++||++||+||+   +||++..++
T Consensus        84 Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~  117 (361)
T d1mxga2          84 GSKEELVRLIQTAHAYGIKVIADVVINHRAGGDL  117 (361)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEE
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEeeeccccCCcc
Confidence            9999999999999999999999   999986544

>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase)
species: Pseudomonas stutzeri [TaxId: 316]

Probab=99.92  E-value=2e-25  Score=172.65  Aligned_cols=104  Identities=9%  Similarity=0.112  Sum_probs=85.9

Q ss_pred             cccCCceEEEEecccccCcCC-CCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC---------CCCCCCccCCCCCCC
Q psy12953         26 EWWQTAIMYQIYPRSFRDVNG-DGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG---------ADLGYDVSNYVDVDP   95 (136)
Q Consensus        26 ~w~~~~~iY~v~~~~f~~~~~-~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~---------~~~gY~~~d~~~vd~   95 (136)
                      -+-.+.+++|-+-.   +..+ ..+++|++++++|+|||+||||+|||+|+++++.         .++||++.|| ++||
T Consensus        12 ~~~g~~~~~~~f~w---~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy-~vd~   87 (357)
T d1gcya2          12 YHGGDEIILQGFHW---NVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDF-NKNG   87 (357)
T ss_dssp             CGGGCCCEEECCCT---THHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSS-CSCS
T ss_pred             ecCCCEEEEeeeec---CCCCCCCCcHHHHHHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhc-ccCc
Confidence            34556788884421   2222 2246799999999999999999999999999743         3579999998 6999


Q ss_pred             CCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCCCC
Q psy12953         96 LFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQGR  133 (136)
Q Consensus        96 ~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~~~  133 (136)
                      +|||.++|++||++||++||+||+   +||++.+|+.....
T Consensus        88 ~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~  128 (357)
T d1gcya2          88 RYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEIN  128 (357)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCC
T ss_pred             cCCCHHHHHHHHHHHHhcCCeEEEEEeccccCCCCCccccc
Confidence            999999999999999999999999   99999998877643

>d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp., ksm-k38 [TaxId: 1409]

Probab=99.92  E-value=9.3e-26  Score=173.41  Aligned_cols=81  Identities=20%  Similarity=0.324  Sum_probs=75.7

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCC---------CCCCCCCCHHHHHHHHHHHHHCCCcEE
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYV---------DVDPLFGDMHDFEILIEEAHSRGKPKR  118 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~---------~vd~~~Gt~~~~~~lv~~ah~~Gi~vi  118 (136)
                      +|+++++.++|+|||+||||+|||+||+++++ .++||++.||+         ++||+||+.+||++||++||++||+||
T Consensus        19 ~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~H~~GI~Vi   98 (390)
T d1ud2a2          19 GQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVY   98 (390)
T ss_dssp             SCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHHHhcCCceE
Confidence            48999999999999999999999999998865 68999999996         799999999999999999999999999


Q ss_pred             E---eccCCCccCC
Q psy12953        119 T---FREVTKSFAN  129 (136)
Q Consensus       119 l---~nh~~~~~~~  129 (136)
                      +   +||++.+|+.
T Consensus        99 lDvV~NHt~~~~~~  112 (390)
T d1ud2a2          99 GDVVMNHKMGADFT  112 (390)
T ss_dssp             EEECCSEECCCSEE
T ss_pred             EEEccccccCcccc
Confidence            9   9999987754

>d1ua7a2 c.1.8.1 (A:4-347) Bacterial alpha-amylase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=5.1e-26  Score=178.16  Aligned_cols=92  Identities=12%  Similarity=0.203  Sum_probs=83.0

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCCC----------CCCCCccCCCCCCCCCC
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGGA----------DLGYDVSNYVDVDPLFG   98 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~----------~~gY~~~d~~~vd~~~G   98 (136)
                      ++.+|||.+.           ++|++++++|+||++||||+|||+||++.+..          +|||++.||+.+||+||
T Consensus         4 ~~~~i~~~f~-----------~~f~~i~~~ldyl~~lGv~aIwl~Pi~~~~~~~~~~~~~~~~y~gY~~~dy~~vd~~~G   72 (344)
T d1ua7a2           4 KSGTILHAWN-----------WSFNTLKHNMKDIHDAGYTAIQTSPINQVKEGNQGDKSMSNWYWLYQPTSYQIGNRYLG   72 (344)
T ss_dssp             TTSCEEECTT-----------BCHHHHHHTHHHHHHTTCSEEEECCCEEECCTGGGCCBGGGGGGGGCEEEEEEEETTTE
T ss_pred             CCCeEEEecC-----------CcHHHHHHhHHHHHHcCCCEEEeCCCeeCCCcCCCCCCCCCCccccccccCCCCCCCCC
Confidence            4668888655           45789999999999999999999999997642          48899999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         99 DMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        99 t~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      |.+||++||++||++||+||+   +||++.+|+...
T Consensus        73 t~~df~~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~  108 (344)
T d1ua7a2          73 TEQEFKEMCAAAEEYGIKVIVDAVINHTTFDYAAIS  108 (344)
T ss_dssp             EHHHHHHHHHHHHTTTCEEEEEECCSBCCSCTTTSC
T ss_pred             CHHHHHHHHHHhcccceeEeeccceeeecCCCchhh
Confidence            999999999999999999999   999999988765

>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]

Probab=99.91  E-value=9e-25  Score=172.39  Aligned_cols=96  Identities=20%  Similarity=0.362  Sum_probs=80.9

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCC---------CCCCCCCC
Q psy12953         30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYV---------DVDPLFGD   99 (136)
Q Consensus        30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~---------~vd~~~Gt   99 (136)
                      +.+|+|.+-.    ...+.+|+|+|++++|+|||+||||+|||+||+++.. .++||++.|++         .|||+|||
T Consensus         2 ~~~~~~~f~w----~~~~~gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt   77 (393)
T d1e43a2           2 NGTLMQYFEW----YTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGT   77 (393)
T ss_dssp             CCCEEECCCT----TCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCC
T ss_pred             CccEEEeEec----CCCCCCCCHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCC
Confidence            3567775532    2233358999999999999999999999999999754 67888887765         48999999


Q ss_pred             HHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953        100 MHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus       100 ~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      .+||++||++||++||+||+   +||++..|+.
T Consensus        78 ~~df~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~  110 (393)
T d1e43a2          78 KSELQDAIGSLHSRNVQVYGDVVLNHKAGADAT  110 (393)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEeeccccCCCcc
Confidence            99999999999999999999   9999987764

>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus sp. 707 [TaxId: 1416]

Probab=99.90  E-value=1.9e-24  Score=170.04  Aligned_cols=94  Identities=14%  Similarity=0.305  Sum_probs=79.9

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCC---------CCCCCCCC
Q psy12953         30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYV---------DVDPLFGD   99 (136)
Q Consensus        30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~---------~vd~~~Gt   99 (136)
                      +.+|+|.+-..   .+ ..+++|++|+++|+||++||||+|||+||+++.+ .++||++.|++         .|||+|||
T Consensus         2 ~~~~~q~f~w~---~~-~~g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt   77 (394)
T d2d3na2           2 NGTMMQYFEWY---LP-NDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGT   77 (394)
T ss_dssp             CCCEEECCCTT---CC-SSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBC
T ss_pred             CccEEEEEecc---cC-CCCCcHHHHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCC
Confidence            56888875321   11 2248899999999999999999999999999854 67889888876         59999999


Q ss_pred             HHHHHHHHHHHHHCCCcEEE---eccCCCcc
Q psy12953        100 MHDFEILIEEAHSRGKPKRT---FREVTKSF  127 (136)
Q Consensus       100 ~~~~~~lv~~ah~~Gi~vil---~nh~~~~~  127 (136)
                      .+||++||++||++||+||+   +||++..+
T Consensus        78 ~~df~~Lv~~aH~~GIkVilDvV~NH~~~~~  108 (394)
T d2d3na2          78 RSQLQAAVTSLKNNGIQVYGDVVMNHKGGAD  108 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSEECSCS
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEecccccCcc
Confidence            99999999999999999999   99998654

>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=3.5e-24  Score=168.60  Aligned_cols=92  Identities=23%  Similarity=0.427  Sum_probs=79.7

Q ss_pred             CceEEEEecccccCcCCCCCCCHHHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCC---------CCCCCCCC
Q psy12953         30 TAIMYQIYPRSFRDVNGDGTGDMRGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYV---------DVDPLFGD   99 (136)
Q Consensus        30 ~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~---------~vd~~~Gt   99 (136)
                      +.+|+|.+-..-    +.++|+|++|+++|+|||+||||+|||+||+++++ .++||++.||+         +|||+|||
T Consensus         5 ~~~~~~~f~w~~----~~~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt   80 (393)
T d1hvxa2           5 NGTMMQYFEWYL----PDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGT   80 (393)
T ss_dssp             CCCEEECCCTTC----CSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCC
T ss_pred             CceEEEeEeecc----CCCCChHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCC
Confidence            567777654322    23457899999999999999999999999998865 68999999996         59999999


Q ss_pred             HHHHHHHHHHHHHCCCcEEE---eccCCC
Q psy12953        100 MHDFEILIEEAHSRGKPKRT---FREVTK  125 (136)
Q Consensus       100 ~~~~~~lv~~ah~~Gi~vil---~nh~~~  125 (136)
                      .+||++||++||++||+||+   +||++.
T Consensus        81 ~~df~~LV~~aH~~GIkVIlDvV~NHt~~  109 (393)
T d1hvxa2          81 KAQYLQAIQAAHAAGMQVYADVVFDHKGG  109 (393)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECCSEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence            99999999999999999999   999964

>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Maltooligosyl trehalose synthase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.88  E-value=1.2e-23  Score=177.33  Aligned_cols=81  Identities=26%  Similarity=0.419  Sum_probs=75.6

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVT  124 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~  124 (136)
                      ++||++++++|+||++|||++|||+||++.. .+++||++.||+.|||+|||.++|++||++||++||+||+   +||++
T Consensus        13 gftF~~~~~~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm~VIlDiVpNH~g   92 (653)
T d1iv8a2          13 NFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGLGIIQDIVPNHMA   92 (653)
T ss_dssp             TBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTCEEEEEECCSEEE
T ss_pred             CCCHHHHHHhhHHHHHCCCCEEEECccCCCCCCCCCCccccCccccchhcCCHHHHHHHHHHHHHCCCEEEEEECCCccc
Confidence            3799999999999999999999999999764 4679999999999999999999999999999999999999   89999


Q ss_pred             CccCC
Q psy12953        125 KSFAN  129 (136)
Q Consensus       125 ~~~~~  129 (136)
                      .+|++
T Consensus        93 ~d~~~   97 (653)
T d1iv8a2          93 VNSLN   97 (653)
T ss_dssp             CCTTC
T ss_pred             CCccc
Confidence            87754

>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial alpha-amylase
species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]

Probab=99.87  E-value=8.2e-23  Score=158.88  Aligned_cols=78  Identities=9%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             HHHHHHhH-HHHHHcCCcEEEEcCCccCCCC---CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCC
Q psy12953         52 MRGITEKL-DHFVDLGIESLWIQPFYPAGGA---DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVT  124 (136)
Q Consensus        52 ~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~~---~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~  124 (136)
                      |+++++++ +||++||||+|||+|+++++..   .+||++.|| +|||+|||++||++||++||++||+||+   +||++
T Consensus        13 ~~~i~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy-~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH~~   91 (354)
T d1g94a2          13 WQDVAQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSY-ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINHMA   91 (354)
T ss_dssp             HHHHHHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCS-CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSEEC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcc-eeCCCCCCHHHHHHHHHHHhccCceeEEEeeccccc
Confidence            78998877 6999999999999999998663   259999997 6999999999999999999999999999   99998


Q ss_pred             CccCCC
Q psy12953        125 KSFANN  130 (136)
Q Consensus       125 ~~~~~~  130 (136)
                      .+++..
T Consensus        92 ~~~~~~   97 (354)
T d1g94a2          92 AGSGTG   97 (354)
T ss_dssp             SSCEEB
T ss_pred             cccCCC
Confidence            877543

>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]

Probab=99.86  E-value=6.7e-23  Score=160.62  Aligned_cols=93  Identities=12%  Similarity=0.123  Sum_probs=78.7

Q ss_pred             ccccC-CceEEEEecccccCcCCCCCCCHHHHHHhHH-HHHHcCCcEEEEcCCccCCC-C----CCCCCccCCCCCCCCC
Q psy12953         25 KEWWQ-TAIMYQIYPRSFRDVNGDGTGDMRGITEKLD-HFVDLGIESLWIQPFYPAGG-A----DLGYDVSNYVDVDPLF   97 (136)
Q Consensus        25 ~~w~~-~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l~-~l~~lG~~~I~l~Pi~~~~~-~----~~gY~~~d~~~vd~~~   97 (136)
                      +.+.. +.+|+|.+-..           |++++++|+ ||++||||+|||+|+.+++. .    .+||++.|| +||++|
T Consensus         4 ~~~~~~~~~i~~~f~W~-----------~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY-~id~~~   71 (378)
T d1jaea2           4 ANFASGRNSIVHLFEWK-----------WNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSY-IINTRS   71 (378)
T ss_dssp             CCCCTTCEEEEEETTCC-----------HHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCS-CSEETT
T ss_pred             CCCCCCCceEEEeccCc-----------HHHHHHHHHHHHHHhCCCEEEeCcccccCCCCCCCCccccCCccc-eeCCCC
Confidence            34433 35888866553           689999998 89999999999999998754 1    368999997 699999


Q ss_pred             CCHHHHHHHHHHHHHCCCcEEE---eccCCCccCC
Q psy12953         98 GDMHDFEILIEEAHSRGKPKRT---FREVTKSFAN  129 (136)
Q Consensus        98 Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~  129 (136)
                      ||++||++||++||++||+||+   +||++..++.
T Consensus        72 Gt~~df~~LV~~aH~~GI~VilDvV~NH~~~~~~~  106 (378)
T d1jaea2          72 GDESAFTDMTRRCNDAGVRIYVDAVINHMTGMNGV  106 (378)
T ss_dssp             EEHHHHHHHHHHHHHTTCEEEEEECCSBCCSSCEE
T ss_pred             CCHHHHHHHHHHHHhcCceeeeeecccccccccCC
Confidence            9999999999999999999999   9999887654

>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Animal alpha-amylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.84  E-value=9.4e-22  Score=154.99  Aligned_cols=90  Identities=11%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             CCceEEEEecccccCcCCCCCCCHHHHHHhH-HHHHHcCCcEEEEcCCccCCCC-------CCCCCccCCCCCCCCCCCH
Q psy12953         29 QTAIMYQIYPRSFRDVNGDGTGDMRGITEKL-DHFVDLGIESLWIQPFYPAGGA-------DLGYDVSNYVDVDPLFGDM  100 (136)
Q Consensus        29 ~~~~iY~v~~~~f~~~~~~~~g~~~~l~~~l-~~l~~lG~~~I~l~Pi~~~~~~-------~~gY~~~d~~~vd~~~Gt~  100 (136)
                      .+.+|+|.+-..           |+++++++ +||++||||+|||+|+.++...       .+||++.|| +|||+|||+
T Consensus         9 g~~~i~~~f~w~-----------~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY-~v~~~~Gt~   76 (403)
T d1hx0a2           9 GRTSIVHLFEWR-----------WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSY-KLCTRSGNE   76 (403)
T ss_dssp             TCCEEEEETTCC-----------HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCS-CSCBTTBCH
T ss_pred             CCeeEEEeecCc-----------HHHHHHHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCC-ccCCCCCCH
Confidence            457899886664           57898776 7899999999999999986431       259999996 799999999


Q ss_pred             HHHHHHHHHHHHCCCcEEE---eccCCCccCCC
Q psy12953        101 HDFEILIEEAHSRGKPKRT---FREVTKSFANN  130 (136)
Q Consensus       101 ~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~  130 (136)
                      +||++||++||++||+||+   +||++.+++..
T Consensus        77 ~dfk~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~  109 (403)
T d1hx0a2          77 NEFRDMVTRCNNVGVRIYVDAVINHMCGSGAAA  109 (403)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCSEEEETTCCC
T ss_pred             HHHHHHHHHHHhcCCEEEEEEeccccccccccc
Confidence            9999999999999999999   99998877554

>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase E1
species: Acidothermus cellulolyticus [TaxId: 28049]

Probab=97.17  E-value=0.00075  Score=49.99  Aligned_cols=71  Identities=14%  Similarity=0.157  Sum_probs=46.3

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccCCC-CCCCCCccCCCCCCCCC---CCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPAGG-ADLGYDVSNYVDVDPLF---GDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~---Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ..+.+.++.+|++|+|+|-| |+....- ....-........++.+   ...+.|+++++.|+++||+||++.|..
T Consensus        44 ~~~~~~~~~i~~~G~N~VRl-pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh~~  118 (358)
T d1ecea_          44 RDYRSMLDQIKSLGYNTIRL-PYSDDILKPGTMPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRP  118 (358)
T ss_dssp             SCHHHHHHHHHHTTCCEEEE-EEEGGGGSTTCCCCSCCCSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             cHHHHHHHHHHHcCCCEEEe-cCcHHHccCCCCCCCccccccChhhhchhHHHHHHHHHHHHHHCCCceeeecccc
Confidence            34677789999999999999 3322110 00000112223445444   336889999999999999999966643

>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exomannosidase
species: Cellvibrio mixtus [TaxId: 39650]

Probab=97.03  E-value=0.0017  Score=47.86  Aligned_cols=66  Identities=18%  Similarity=0.313  Sum_probs=47.5

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCC-----HHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGD-----MHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt-----~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-..+.+.++.+|+||+|+|-+....+...    +....+..+.+..|.     .+.+.+++++|+++||+|++
T Consensus        38 ~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~----~~~~~~~~~~~~~g~~de~gl~~~d~~l~~a~~~Gi~vi~  108 (410)
T d1uuqa_          38 GDRDRLAKELDNLKAIGVNNLRVLAVSEKSE----INSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVL  108 (410)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCCBCCC----STTSCSSCSBSSTTCBCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCcEEEeCCcccccc----cccccCCCcccccccccHHHHHHHHHHHHHHHHcCCeeEE
Confidence            4667788889999999999998754333221    122333345555555     45689999999999999999

>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: endo-1,4-beta-mannosidase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=96.94  E-value=0.00062  Score=49.17  Aligned_cols=70  Identities=9%  Similarity=-0.062  Sum_probs=41.8

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      .....+.+++++++|+|+|-+...........-........+++  ...+.++++++.|.++||.|++.-|.
T Consensus        41 ~~~~~~~l~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~a~~~gi~vi~d~~~  110 (350)
T d2c0ha1          41 KSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDN--TLISDMRAYLHAAQRHNILIFFTLWN  110 (350)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCT--THHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEECcccCccCCcccccCCCCCccCh--hhhHHHHHHHHHHHHCCCEEEEEecc
Confidence            34456668999999999998732221110000000000011222  23688999999999999999994443

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=96.86  E-value=0.001  Score=51.09  Aligned_cols=58  Identities=16%  Similarity=0.121  Sum_probs=40.0

Q ss_pred             HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCC-CCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953         59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDP-LFGDMHDFEILIEEAHSRGKPKRTFREVTK  125 (136)
Q Consensus        59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~  125 (136)
                      ++.|+++|+|+|-| |+.-....     ..+   -++ .-+..+.|+++|+.|.++||+||++.|...
T Consensus        74 ~~~i~~~G~N~VRi-Pv~~~~~~-----~~~---~~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~~p  132 (394)
T d2pb1a1          74 FKQISNLGLNFVRI-PIGYWAFQ-----LLD---NDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAP  132 (394)
T ss_dssp             HHHHHHTTCCEEEE-EEEGGGTC-----CCT---TCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             HHHHHHCCCCEEEE-EecHHHhc-----CCC---CCccchhHHHHHHHHHHHHHHCCcEEEEEeeccC
Confidence            77999999999999 55211100     000   011 114578899999999999999999777543

>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]

Probab=96.77  E-value=0.0023  Score=46.83  Aligned_cols=52  Identities=8%  Similarity=-0.015  Sum_probs=38.9

Q ss_pred             hHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         58 KLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        58 ~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .++.+|+.||++|-+. ++..+.  .|            ..+.+.++++|+.|+++||+|++.-|-+
T Consensus        32 ~~~~lk~~G~n~VRi~-vW~~p~--~g------------~~~~~~~~~~v~~a~~~gl~vil~~h~~   83 (332)
T d1hjsa_          32 LENILAANGVNTVRQR-VWVNPA--DG------------NYNLDYNIAIAKRAKAAGLGVYIDFHYS   83 (332)
T ss_dssp             HHHHHHHTTCCEEEEE-ECSSCT--TC------------TTSHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             HHHHHHHcCCCEEEee-eeecCC--CC------------ccCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence            4568999999999985 553322  11            2258999999999999999999933433

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Trichoderma reesei [TaxId: 51453]

Probab=96.73  E-value=0.0024  Score=46.67  Aligned_cols=72  Identities=6%  Similarity=0.077  Sum_probs=44.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC-------CHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG-------DMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G-------t~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      .+-..+.+.|+.++++|+|+|-+--..... ..+-+....+..++...|       ..+.+.+++++|+++||+|++.-|
T Consensus        33 ~~~~~~~~~l~~~~~~G~N~iR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~a~~~Gi~vi~~l~  111 (344)
T d1qnra_          33 TNHADVDSTFSHISSSGLKVVRVWGFNDVN-TQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFV  111 (344)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECCCCCEES-SCCSTTCCCSEECCTTCCEECCSTTTTHHHHHHHHHHHHHTCEEEEESC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEECCccccc-ccCCCCccchhhcccccCccccCHHHHHHHHHHHHHHHHcCCeeEeecc
Confidence            456788888999999999999862211110 011111111222222211       257899999999999999999444

>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Bacillus sp. JAMB-602 [TaxId: 244966]

Probab=96.71  E-value=0.0026  Score=46.01  Aligned_cols=56  Identities=14%  Similarity=0.082  Sum_probs=40.7

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ...+.++.+|++|+|+|-| |+....     +-.         -+..+.++++|+.|.++||.||++-|..
T Consensus        33 ~~~~d~~~~~~~G~N~VRl-~~~~~~-----~~~---------~~~~~~ld~~v~~a~~~Gi~vildlh~~   88 (297)
T d1wkya2          33 QATTAIEGIANTGANTVRI-VLSDGG-----QWT---------KDDIQTVRNLISLAEDNNLVAVLEVHDA   88 (297)
T ss_dssp             GHHHHHHHHHTTTCSEEEE-EECCSS-----SSC---------CCCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             HHHHHHHHHHHCCCcEEEE-eccCCC-----ccC---------ccHHHHHHHHHHHHHHCCCceEeecccc
Confidence            4556689999999999987 333211     111         1236889999999999999999955543

>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelA
species: Clostridium cellulolyticum [TaxId: 1521]

Probab=96.70  E-value=0.00056  Score=52.07  Aligned_cols=59  Identities=7%  Similarity=0.018  Sum_probs=39.8

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      .+.++.||++||++|-|+ |.-..     +....-+.+|+.+  ++.++++|+.|.++||+||+..|
T Consensus        64 ~~~i~~ik~~Gfn~vRiP-v~w~~-----~~~~~~~~i~~~~--l~~v~~vV~~a~~~Gl~VIldlH  122 (380)
T d1edga_          64 KQMIDAIKQKGFNTVRIP-VSWHP-----HVSGSDYKISDVW--MNRVQEVVNYCIDNKMYVILNTH  122 (380)
T ss_dssp             HHHHHHHHHHTCCEEEEC-CCCGG-----GEETTTTEECHHH--HHHHHHHHHHHHTTTCEEEEECC
T ss_pred             HHHHHHHHHcCCCEEEEc-ccHHH-----hcCCCCCccCHHH--HHHHHHHHHHHHHcCCEEEEecc
Confidence            566889999999999993 42111     0000012333322  56799999999999999999555

>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0025  Score=49.24  Aligned_cols=58  Identities=16%  Similarity=0.059  Sum_probs=39.0

Q ss_pred             HHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCC--CHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953         59 LDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFG--DMHDFEILIEEAHSRGKPKRTFREVTK  125 (136)
Q Consensus        59 l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~G--t~~~~~~lv~~ah~~Gi~vil~nh~~~  125 (136)
                      ++.|+++|+|+|-|+=-+..         .....-++.+.  ..+-|+++|+.|.++||+||++-|...
T Consensus        79 ~~~i~~~G~N~VRiPi~~~~---------~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDlH~~p  138 (408)
T d1h4pa_          79 FANIASQGFNLVRIPIGYWA---------FQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHGAA  138 (408)
T ss_dssp             HHHHHHTTCCEEEEEEEGGG---------TCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             HHHHHHCCCCEEEEeccHHH---------hcCCCCCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            77999999999999521111         00011122222  256799999999999999999777543

>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=96.51  E-value=0.0016  Score=47.79  Aligned_cols=67  Identities=10%  Similarity=0.012  Sum_probs=42.1

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      +-..+.+.++.+|++|+|+|-+.........  .+.. .--..|  ....+.|++++++|.++||+|++.-|
T Consensus        37 ~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~--~~~~-~~g~~~--~~~l~~ld~~l~~a~~~Gi~vi~~l~  103 (370)
T d1rh9a1          37 TRIKVTNTFQQASKYKMNVARTWAFSHGGSR--PLQS-APGVYN--EQMFQGLDFVISEAKKYGIHLIMSLV  103 (370)
T ss_dssp             TTHHHHHHHHHHHHTTCCEEEEESSCSSSSS--CSEE-ETTEEC--HHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CHHHHHHHHHHHHHCCCeEEEECCccCccCc--ccCC-CCCccc--HHHHHHHHHHHHHHHHcCCEEEEecc
Confidence            4466788899999999999987432111100  0000 000000  11357899999999999999999444

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase homologue TM1752
species: Thermotoga maritima [TaxId: 2336]

Probab=96.44  E-value=0.002  Score=46.94  Aligned_cols=60  Identities=7%  Similarity=-0.137  Sum_probs=39.5

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      .+-++.|+++|+|+|-|.=-+..-....+     ...+++  ...+-++++|++|.++||+||++.|
T Consensus        23 e~d~~~l~~~G~n~vRlpv~~~~~~~~~~-----~~~~~~--~~l~~ld~~v~~~~~~gi~vildlH   82 (325)
T d1vjza_          23 EEDFLWMAQWDFNFVRIPMCHLLWSDRGN-----PFIIRE--DFFEKIDRVIFWGEKYGIHICISLH   82 (325)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEGGGTSCSSC-----TTCCCG--GGHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHHHcCCCEEEecccHHHccCCCC-----CCccCH--HHHHHHHHHHHHHHHcCCcEEEeec
Confidence            44578999999999998421111111111     112222  2368899999999999999999666

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelC
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.35  E-value=0.0023  Score=47.64  Aligned_cols=61  Identities=8%  Similarity=0.063  Sum_probs=39.3

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCC-CCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAG-GADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~-~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      .+-++.|+++|+|+|-| ||.-.. ....+     -..+++  +..+.|+++|+.|+++||+||+..|..
T Consensus        31 e~d~~~i~~~G~n~vRl-pi~~~~~~~~~~-----~~~~~~--~~~~~ld~~v~~a~~~gi~vild~H~~   92 (340)
T d1ceoa_          31 EKDIETIAEAGFDHVRL-PFDYPIIESDDN-----VGEYKE--DGLSYIDRCLEWCKKYNLGLVLDMHHA   92 (340)
T ss_dssp             HHHHHHHHHHTCCEEEE-EEEGGGTBCSSS-----TTCBCH--HHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHHHHHHHcCCCEEEe-ecCHHHhccCCC-----CCccCH--HHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence            45588999999999998 442110 00000     001111  125679999999999999999965643

>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylomaltase MalQ
species: Thermus aquaticus [TaxId: 271]

Probab=96.34  E-value=0.0043  Score=49.42  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             CCCCCCH-HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         46 GDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        46 ~~~~g~~-~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      +-|.||| .++.+.++.++++|++.+.++|+.+....+++|++.+=+.+||-|=+.+++.+
T Consensus        19 ~~GiGdfG~~a~~fid~l~~~G~~~wQiLPl~pt~~~~SPYs~~S~fAlNPlyIdle~L~e   79 (500)
T d1eswa_          19 PYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAE   79 (500)
T ss_dssp             SSSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCGGGCCSHHHHH
T ss_pred             CCCCcchhHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCcCcccchhcCHHHcCHHhhhh
Confidence            3567999 89999999999999999999999998877789999999999999988766543

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Bacillus licheniformis [TaxId: 1402]

Probab=96.29  E-value=0.0077  Score=45.83  Aligned_cols=61  Identities=10%  Similarity=0.092  Sum_probs=40.4

Q ss_pred             hHHHHHHcCCcEEEEcCCccCCCC--CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCcc
Q psy12953         58 KLDHFVDLGIESLWIQPFYPAGGA--DLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSF  127 (136)
Q Consensus        58 ~l~~l~~lG~~~I~l~Pi~~~~~~--~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~  127 (136)
                      .++.+|+.|+|+|-|. ++..+..  ...|.        .-.-+.+.+.++++.|+++||+|++.-|-+...
T Consensus        43 ~~~~lk~~G~n~VRl~-vw~~~~~~~~~~~~--------~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~sd~w  105 (387)
T d1ur4a_          43 IFKTLKEAGVNYVRVR-IWNDPYDANGNGYG--------GGNNDLEKAIQIGKRATANGMKLLADFHYSDFW  105 (387)
T ss_dssp             HHHHHHHTTCCEEEEE-ECSCCBCTTCCBCS--------TTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSC
T ss_pred             HHHHHHHcCCCEEEee-cccCCcccccCcCC--------CccccHHHHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence            4779999999999963 3332211  11110        111237899999999999999999955654433

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=96.18  E-value=0.0082  Score=45.18  Aligned_cols=56  Identities=14%  Similarity=0.042  Sum_probs=41.6

Q ss_pred             hHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccC
Q psy12953         58 KLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFA  128 (136)
Q Consensus        58 ~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~  128 (136)
                      .++.||++||++|-|. ++..+.  .            ..-+.++++++++.|+++||+|++.-|-+....
T Consensus        32 ~~~~lk~~G~n~VRlr-vW~~p~--~------------g~~~~~~~~~~~~~a~~~Gm~vll~~hysd~Wa   87 (334)
T d1foba_          32 LETILADAGINSIRQR-VWVNPS--D------------GSYDLDYNLELAKRVKAAGMSLYLDLHLSDTWA   87 (334)
T ss_dssp             HHHHHHHHTCCEEEEE-ECSCCT--T------------CTTCHHHHHHHHHHHHHTTCEEEEEECCSSSCC
T ss_pred             HHHHHHHcCCCEEEee-eeeCCC--C------------CcCcHHHHHHHHHHHHHCCCEEEEEecCCCccc
Confidence            4568899999999986 653332  1            123689999999999999999999555544443

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.0067  Score=43.55  Aligned_cols=55  Identities=13%  Similarity=0.116  Sum_probs=39.2

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCC-ccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPF-YPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi-~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +.+.+-++-+|++|+++|-+.-+ ...-....|  ..|          .+.+.++|++|+++||++|+
T Consensus        14 ~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G--~~~----------~~~~d~~i~~~~~~Gi~~iv   69 (393)
T d1kwga2          14 ERWKEDARRMREAGLSHVRIGEFAWALLEPEPG--RLE----------WGWLDEAIATLAAEGLKVVL   69 (393)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTT--BCC----------CHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEecccchhhcCCCCC--ccC----------HHHHHHHHHHHHHCCCEEEE
Confidence            34677799999999999998742 221111112  122          36889999999999999999

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Thermomonospora fusca [TaxId: 2021]

Probab=95.90  E-value=0.013  Score=42.32  Aligned_cols=55  Identities=9%  Similarity=-0.026  Sum_probs=38.8

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCC
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTK  125 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~  125 (136)
                      .+.++.||++|+|+|-+. +.....    |          .....+.++++|+.|.++||.||+..|...
T Consensus        35 ~~~~~~i~~~G~N~VRl~-~~~~~~----~----------~~~~~~~~~~~v~~a~~~Gi~vildlh~~~   89 (302)
T d1bqca_          35 TQAFADIKSHGANTVRVV-LSNGVR----W----------SKNGPSDVANVISLCKQNRLICMLEVHDTT   89 (302)
T ss_dssp             TTHHHHHHHTTCSEEEEE-ECCSSS----S----------CCCCHHHHHHHHHHHHHTTCEEEEEEGGGT
T ss_pred             HHHHHHHHhcCCCEEEEe-cccccc----c----------CcchHHHHHHHHHHHHHCCCEEEEEecccc
Confidence            345788999999999973 211100    0          012368899999999999999999656443

>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alkaline cellulase K catalytic domain
species: Bacillus sp. [TaxId: 1409]

Probab=95.81  E-value=0.0095  Score=44.36  Aligned_cols=56  Identities=14%  Similarity=0.067  Sum_probs=40.3

Q ss_pred             HhHHHHHH-cCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         57 EKLDHFVD-LGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        57 ~~l~~l~~-lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      +.++.|++ +|+|+|-|. +...   ..+      +..+|.+  .+.+++.|+.|.++||.||++.|..
T Consensus        55 ~~~~~l~~~~G~N~VRlp-~~~~---~~~------~~~~~~~--~~~ld~~V~~a~~~GiyVIlD~H~~  111 (357)
T d1g01a_          55 NAFVALSNDWGSNMIRLA-MYIG---ENG------YATNPEV--KDLVYEGIELAFEHDMYVIVDWHVH  111 (357)
T ss_dssp             HHHHHHHTTSCCSEEEEE-EESS---SSS------TTTCTTH--HHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred             HHHHHHHHhcCCCEEEEe-eeec---CCC------CccCHHH--HHHHHHHHHHHHHCCCEEEEeeccc
Confidence            45777875 899999983 3221   112      2345543  6789999999999999999977754

>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylomaltase MalQ
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=95.78  E-value=0.0091  Score=47.76  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             eEEEEecccccCcCCCCCCCH-HHHHHhHHHHHHcCCcEEEEcCCccCCC----CCCCCCccCCCCCCCCCCCHHHHHH
Q psy12953         32 IMYQIYPRSFRDVNGDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPAGG----ADLGYDVSNYVDVDPLFGDMHDFEI  105 (136)
Q Consensus        32 ~iY~v~~~~f~~~~~~~~g~~-~~l~~~l~~l~~lG~~~I~l~Pi~~~~~----~~~gY~~~d~~~vd~~~Gt~~~~~~  105 (136)
                      .---+|+-+...  +-|.||| .++.+.++.+++.|++.+.++|+.+...    .+++|++.+=+..||-|=+.+++.+
T Consensus        27 ~Gvllh~~SLp~--~~GiGDfG~~a~~fvd~l~~~G~~~wQiLPL~~t~~~~~~~~SPYs~~S~falNPlyI~l~~L~e  103 (523)
T d1x1na1          27 AGILLHPTSFPG--PYGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDGSPYSGQDANCGNTLLISLEELVD  103 (523)
T ss_dssp             EEEECCGGGSCC--TTSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTTCTTSBSCSSSCCGGGSCHHHHHH
T ss_pred             eEEEecCccCCC--CCCCCcccHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCCCCcchhcchhcCHHHcCHHHHhh
Confidence            333455555552  3578999 7888999999999999999999988642    4579999999999999988876643

>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Amylomaltase MalQ
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.71  E-value=0.011  Score=46.84  Aligned_cols=59  Identities=17%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             CCCCCCH-HHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCCCCCCCCCHHHHH
Q psy12953         46 GDGTGDM-RGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVDVDPLFGDMHDFE  104 (136)
Q Consensus        46 ~~~~g~~-~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~Gt~~~~~  104 (136)
                      .-|.||| .++.+.++.++++|++.+.++|+.+...  .+++|++.+=+..||-|=+.+++.
T Consensus        16 ~~GIGDfG~~a~~~id~~a~~G~~~~QllPl~~t~~~~~~SPYsp~S~falNPlyIdle~L~   77 (485)
T d1tz7a1          16 PYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDPEELL   77 (485)
T ss_dssp             SSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCCGGGSCTHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEecCCCCCCCCCCCCCcCcccchhcCHHHcCHHHhh
Confidence            4567999 7888999999999999999999998643  468999999999999998877653

>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.052  Score=40.66  Aligned_cols=70  Identities=16%  Similarity=0.164  Sum_probs=46.9

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCC--------CCCCCCCCHHHHHHHHHHHHHCCCcEEE--
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYV--------DVDPLFGDMHDFEILIEEAHSRGKPKRT--  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~--------~vd~~~Gt~~~~~~lv~~ah~~Gi~vil--  119 (136)
                      =+.+.+++.|+.++..++|.++|-   -....++.+....|-        +.+..| |.+|+++||+.|+++||+||=  
T Consensus        15 ~~~~~lk~~id~ma~~K~N~lhlH---l~D~~~~~~e~~~~P~l~~~g~~~~~~~y-T~~d~~~lv~yA~~rgI~iiPEi   90 (353)
T d1nowa1          15 LPVKIILKTLDAMAFNKFNVLHWH---IVDDQSFPYQSITFPELSNKGSYSLSHVY-TPNDVRMVIEYARLRGIRVLPEF   90 (353)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEE---CCCSSCCCBCCSSCHHHHHHHSSSTTSCB-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCHHHHHHHHHHHHHcCCcEEEEE---EecCCCceeccCCCcchhhcCCCCCCCCc-CHHHHHHHHHHHHHCCCEEEecc
Confidence            457889999999999999988761   011111222222221        112222 789999999999999999998  


Q ss_pred             --eccC
Q psy12953        120 --FREV  123 (136)
Q Consensus       120 --~nh~  123 (136)
                        +-|+
T Consensus        91 d~PGH~   96 (353)
T d1nowa1          91 DTPGHT   96 (353)
T ss_dssp             EESSSC
T ss_pred             cchhhH
Confidence              5554

>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Bacillus agaradhaerens [TaxId: 76935]

Probab=95.51  E-value=0.016  Score=42.02  Aligned_cols=55  Identities=18%  Similarity=0.160  Sum_probs=38.2

Q ss_pred             HhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         57 EKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        57 ~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      +.++.++ ++|+|+|-+ |++...   .+      +..||.+  .+.++++|+.|.++||.||++.|.
T Consensus        44 ~~~~~l~~~~G~N~VR~-~~~~~~---~~------~~~~~~~--~~~ld~~v~~a~~~Gl~Vild~h~   99 (300)
T d7a3ha_          44 ESMKWLRDDWGINVFRA-AMYTSS---GG------YIDDPSV--KEKVKEAVEAAIDLDIYVIIDWHI   99 (300)
T ss_dssp             HHHHHHHHHTCCCEEEE-EEESST---TS------TTTCTTH--HHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             HHHHHHHHHcCCCEEEE-eeEcCc---cC------cccCHHH--HHHHHHHHHHHHHCCCEEEEeeee
Confidence            3455665 699999998 344322   11      2334443  678999999999999999996653

>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endocellulase EngI
species: Thermoascus aurantiacus [TaxId: 5087]

Probab=95.30  E-value=0.011  Score=43.42  Aligned_cols=57  Identities=12%  Similarity=0.239  Sum_probs=38.9

Q ss_pred             HHhHHHHHHcCCcEEEEcCCc-cC--CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         56 TEKLDHFVDLGIESLWIQPFY-PA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~-~~--~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      .+.+++|+++|+++|-|+ +. +.  +.. .++      .+++  ...+.++++|+.|.++||+||++.|
T Consensus        34 ~~di~~l~~~G~N~VRlP-v~~~~~~~~~-~~~------~~~~--~~~~~l~~~v~~a~~~gl~vIlD~H   93 (305)
T d1h1na_          34 PNTIDTLISKGMNIFRVP-FMMERLVPNS-MTG------SPDP--NYLADLIATVNAITQKGAYAVVDPH   93 (305)
T ss_dssp             HHHHHHHHHTTCCEEEEE-ECHHHHSCSS-TTS------CCCH--HHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHHHCCCCEEEee-eeHHHhccCC-CCC------ccCH--HHHHHHHHHHHHHHhcCCeEEEecc
Confidence            456889999999999984 32 11  110 111      1221  2257899999999999999999555

>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

Probab=95.26  E-value=0.0036  Score=47.21  Aligned_cols=58  Identities=10%  Similarity=0.091  Sum_probs=40.7

Q ss_pred             HHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         53 RGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        53 ~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .-+.+.|+-+|++|+|+|-+.=.+..-+...|  ..||       ....++.+++++|+++||+||+
T Consensus        36 ~~w~~~l~~mk~~G~n~vr~~~~W~~~ep~~g--~~df-------~~~~~l~~~l~~a~~~Gl~vil   93 (354)
T d1tg7a5          36 SLYIDIFEKVKALGFNCVSFYVDWALLEGNPG--HYSA-------EGIFDLQPFFDAAKEAGIYLLA   93 (354)
T ss_dssp             GGHHHHHHHHHTTTCCEEEEECCHHHHCSBTT--BCCC-------CGGGCSHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEecchhccCCCCC--cccc-------cchhhHHHHHHHHHHcCCEEEE
Confidence            34677899999999999987433322111112  2233       2356789999999999999999

>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}

class: Alpha and beta proteins (a/b)
fold: EreA/ChaN-like
superfamily: EreA/ChaN-like
family: PMT domain-like
domain: Dermonecrotic toxin, ToxA
species: Pasteurella multocida [TaxId: 747]

Probab=95.14  E-value=0.0048  Score=43.57  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=50.1

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCcc------------CCCCC-CC-CCccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYP------------AGGAD-LG-YDVSNYVDVDPLFGDMHDFEILIEEAHSRGK  115 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~------------~~~~~-~g-Y~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi  115 (136)
                      |.++=+.+.++-|++-|+|+|+|-=...            .+..+ .. -.-..+...|...    .|+.|++.||++||
T Consensus        45 gS~RfvienM~~Lk~~GVTvI~lEHL~sD~~Q~~Id~Yl~~G~~S~~L~a~Lk~l~~~d~~g----af~~Li~~Ar~ngi  120 (219)
T d2ebfx2          45 KSIDFFLNNLTTFIDNGLTEIAISDLPYDIVQQEISQFLQGSNEWKTLDAMLFNLDKGDING----AFRKLLQSAKDNNI  120 (219)
T ss_dssp             HHHHHHHHTHHHHHHTTCCEEEEEEEEHHHHHHHHHHHHTTCSCCHHHHHHHHHHTTTCSSC----HHHHHHHHHHHTTC
T ss_pred             chHHHHHHhhHHHHHCCceEEeHhhhhhhHHHHHHHHHHhcCcCCccHHHHHHHhhcccchh----hHHHHHHHHHHCCc
Confidence            4577889999999999999999943211            11100 00 0000111222222    68899999999999


Q ss_pred             cEEEeccCCCccCCCCC
Q psy12953        116 PKRTFREVTKSFANNQG  132 (136)
Q Consensus       116 ~vil~nh~~~~~~~~~~  132 (136)
                      +|+.+.|.+-+.|..++
T Consensus       121 kI~aLd~~sts~p~~~~  137 (219)
T d2ebfx2         121 KFRAIGHSDNSVPPFNN  137 (219)
T ss_dssp             EEEEEECCTTCSSCCCS
T ss_pred             EEEEccCCCcccCCCCC
Confidence            99996666666666554

>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Pseudoalteromonas haloplanktis [TaxId: 228]

Probab=94.67  E-value=0.018  Score=41.80  Aligned_cols=57  Identities=7%  Similarity=-0.004  Sum_probs=35.3

Q ss_pred             HHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccC
Q psy12953         59 LDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREV  123 (136)
Q Consensus        59 l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~  123 (136)
                      +..|+ ++|+|+|-+. +...+.....|.      ..+. +..+.++++|+.|+++||.||++.|.
T Consensus        44 ~~~l~~~~g~N~VR~~-~~~~~~~~~~~~------~~~~-~~l~~ld~~v~~a~~~gi~vild~h~  101 (293)
T d1tvna1          44 VAKAKTEFNATLIRAA-IGHGTSTGGSLN------FDWE-GNMSRLDTVVNAAIAEDMYVIIDFHS  101 (293)
T ss_dssp             HHHHHHHHCCSEEEEE-EECCTTSTTSTT------TCHH-HHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHhCCCcEEEEe-cccccccccccc------cCcH-HHHHHHHHHHHHHHHcCCEEEecCcc
Confidence            44555 6899999983 222211111110      0001 12567999999999999999997774

>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.096  Score=39.35  Aligned_cols=67  Identities=15%  Similarity=0.139  Sum_probs=46.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC--------CCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD--------VDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~--------vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      =+.+.+++.++.++..++|.+++-   -+...++.+....|-.        ....+=|.+|+++||+-|+++||+||-
T Consensus        15 ~~~~~lk~~id~ma~~K~N~lhlH---ltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA~~rgI~vIP   89 (362)
T d2gjxa1          15 LPLSSILDTLDVMAYNKLNVFHWH---LVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLA   89 (362)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEE---CCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCHHHHHHHHHHHHHcCCcEEEEE---EEcCCCceeccCCCchhhhcCCcCCCCCccCHHHHHHHHHHHHHcCCEEEe
Confidence            457899999999999999999871   1111122222222211        112333899999999999999999999

>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase Cel5a
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.23  E-value=0.03  Score=40.49  Aligned_cols=56  Identities=14%  Similarity=0.108  Sum_probs=37.2

Q ss_pred             HhHHHHH-HcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         57 EKLDHFV-DLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        57 ~~l~~l~-~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      +.++.|+ ++|+|+|-+ |+.....  .||.      .+|+ +..+.++++|+.|.++||.||++.|
T Consensus        42 ~~~~~l~~~~G~N~vR~-~~~~~~~--~~~~------~~~~-~~~~~ld~vv~~a~~~Giyvild~h   98 (291)
T d1egza_          42 DTVASLKKDWKSSIVRA-AMGVQES--GGYL------QDPA-GNKAKVERVVDAAIANDMYAIIGWH   98 (291)
T ss_dssp             HHHHHHHHTTCCCEEEE-EEECSST--TSTT------TCHH-HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHhcCCCEEEE-ecccccc--CCcc------cCcH-HHHHHHHHHHHHHHHCCCeEeeeec
Confidence            4455666 699999997 4443321  2221      1221 2267789999999999999999555

>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Bacterial chitobiase (beta-N-acetylhexosaminidase)
species: Serratia marcescens [TaxId: 615]

Probab=94.20  E-value=0.073  Score=40.78  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEc---------CCccCCC-----CCCCCCccCCCCCCCCCC----------CHHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQ---------PFYPAGG-----ADLGYDVSNYVDVDPLFG----------DMHDFEI  105 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~---------Pi~~~~~-----~~~gY~~~d~~~vd~~~G----------t~~~~~~  105 (136)
                      =+.+.+++.|+.++..++|.+++-         .+-..|.     ...+..........|.+|          |.+|+++
T Consensus        15 ~~~~~ik~~id~ma~~KlN~lH~HltD~qg~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~ei~e   94 (443)
T d1qbaa3          15 HKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYID   94 (443)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECBCSSCBCBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTSCSSCEECCBCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCcEEEEEEecCCCceeeeCCcchhhhhcccccccccccccccccccCCCCCCCCccCHHHHHH
Confidence            467899999999999999988771         1111110     001112222222333222          5899999


Q ss_pred             HHHHHHHCCCcEEE----eccC
Q psy12953        106 LIEEAHSRGKPKRT----FREV  123 (136)
Q Consensus       106 lv~~ah~~Gi~vil----~nh~  123 (136)
                      +|+-|+++||+||-    +-|+
T Consensus        95 iv~yA~~rgI~vIPEID~PGH~  116 (443)
T d1qbaa3          95 IIKYAQARQIEVIPEIDMPAHA  116 (443)
T ss_dssp             HHHHHHHTTCEEEEEEEESSSC
T ss_pred             HHHHHHHcCCEEeeccchHHHH
Confidence            99999999999999    6665

>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Putative alpha-L-fucosidase, catalytic domain
domain: Putative alpha-L-fucosidase, catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.083  Score=39.73  Aligned_cols=66  Identities=14%  Similarity=0.020  Sum_probs=49.3

Q ss_pred             HHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         56 TEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        56 ~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      .+.++-+|++|+.-|.|..=+..+..-|.=..++|..++... ..+=+++|+++|++.||++-+.-|
T Consensus       102 ~~Wv~~ak~aGaky~vlTaKHHDGF~Lw~S~~t~~n~~~~~~-~rDiv~el~~A~rk~Glk~G~YyS  167 (350)
T d1hl9a2         102 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGP-KRDLVGDLAKAVREAGLRFGVYYS  167 (350)
T ss_dssp             HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTT-CSCHHHHHHHHHHHTTCEECEEEC
T ss_pred             HHHHHHHHHcCCCEEEEEEEecCCcccCCCCCCCCCCcCCCC-CCchHHHHHHHHHhcCCceeEEec
Confidence            445678999999999998877665432333456777777444 457799999999999999999333

>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Dispersin B, DspB
species: Actinobacillus actinomycetemcomitans [TaxId: 714]

Probab=93.18  E-value=0.12  Score=38.42  Aligned_cols=67  Identities=12%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC-------------CCC----CCCCHHHHHHHHHHHHH
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD-------------VDP----LFGDMHDFEILIEEAHS  112 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~-------------vd~----~~Gt~~~~~~lv~~ah~  112 (136)
                      =+.+.+.+.|+.++..++|.+++--   ....++.+....|-.             ..+    .+=|.+|++++|+-|++
T Consensus        15 ~~~~~ik~~id~ma~~K~N~lhlHl---tDdq~~~le~~~~p~l~~~~~~~~~~~~~~~~~~~~~yt~~e~~~lv~yA~~   91 (344)
T d1yhta1          15 YSPEVIKSFIDTISLSGGNFLHLHF---SDHENYAIESHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKAYAKA   91 (344)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEC---BSSSCBCBCBTTTTBCGGGSEECTTSCEECTTTCCEEBCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCcEEEEEe---ecCCCceecccCCchhhhhccccCCCCCCCCCCCCcccCHHHHHHHHHHHHH
Confidence            3578999999999999999887710   000001111111100             011    12278999999999999


Q ss_pred             CCCcEEE
Q psy12953        113 RGKPKRT  119 (136)
Q Consensus       113 ~Gi~vil  119 (136)
                      +||+||-
T Consensus        92 rgI~viP   98 (344)
T d1yhta1          92 KGIELIP   98 (344)
T ss_dssp             TTCEEEE
T ss_pred             cCCEEEe
Confidence            9999998

>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Outer surface protein, N-terminal domain
domain: Outer surface protein, N-terminal domain
species: Bacillus cereus [TaxId: 1396]

Probab=93.06  E-value=0.21  Score=35.86  Aligned_cols=55  Identities=7%  Similarity=0.043  Sum_probs=38.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+++...+-|+..++.||+.|+.+=......      ..++         .+.|+++++.||++||+||+
T Consensus        14 ~~~e~~~~yi~~a~~~Gf~~iFTSL~~~e~~------~~~~---------~~~~~~l~~~a~~~g~~vi~   68 (244)
T d1x7fa2          14 STKEKDMAYISAAARHGFSRIFTCLLSVNRP------KEEI---------VAEFKEIINHAKDNNMEVIL   68 (244)
T ss_dssp             SCHHHHHHHHHHHHTTTEEEEEEEECCC-----------------------HHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEecCccCCCC------HHHH---------HHHHHHHHHHHHHCCCEEEE
Confidence            3567778888889999999999743111110      1111         46799999999999999999

>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-N-acetylhexosaminidase
species: Streptomyces plicatus [TaxId: 1922]

Probab=92.23  E-value=0.19  Score=37.54  Aligned_cols=67  Identities=7%  Similarity=0.051  Sum_probs=43.9

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCC------------CCCCCCCHHHHHHHHHHHHHCCCcE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVD------------VDPLFGDMHDFEILIEEAHSRGKPK  117 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~------------vd~~~Gt~~~~~~lv~~ah~~Gi~v  117 (136)
                      -+...+++.|+.++..++|.+++-=-   ...++.+....|-.            -...+=|.+|++++|+-|.++||+|
T Consensus        15 ~~~~~i~~~id~ma~~K~N~lh~Hl~---D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~iv~ya~~rgI~v   91 (356)
T d1jaka1          15 FGVDEVKRYIDRVARYKYNKLHLHLS---DDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEV   91 (356)
T ss_dssp             CCHHHHHHHHHHHHTTTCCEEEEECB---CSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHHHHHHHHTTCEE
T ss_pred             cCHHHHHHHHHHHHHcCCeEEEEEEe---cCCCcceeecCCchhhhccCccccCCCCCCccCHHHHHHHHHHHHHcCCeE
Confidence            46789999999999999997766210   00011111111111            0112336899999999999999999


Q ss_pred             EE
Q psy12953        118 RT  119 (136)
Q Consensus       118 il  119 (136)
                      |-
T Consensus        92 iP   93 (356)
T d1jaka1          92 VP   93 (356)
T ss_dssp             EE
T ss_pred             ee
Confidence            99

>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=91.83  E-value=0.063  Score=41.60  Aligned_cols=56  Identities=9%  Similarity=0.103  Sum_probs=41.8

Q ss_pred             CCCHHHHHHhHHHHHHcCCcEEEEcCCc----cCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         49 TGDMRGITEKLDHFVDLGIESLWIQPFY----PAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        49 ~g~~~~l~~~l~~l~~lG~~~I~l~Pi~----~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ..+.+.+.+.|..||++||+.|-+ +++    |...  .|  ..|          ++.++++++.+++.|+||.+
T Consensus        25 ~~~~~~~~~~L~~LK~aGV~gV~v-dVwWGivE~~~--Pg--~Yd----------ws~yd~l~~mv~~~GLKi~v   84 (417)
T d1vema2          25 VTNWETFENDLRWAKQNGFYAITV-DFWWGDMEKNG--DQ--QFD----------FSYAQRFAQSVKNAGMKMIP   84 (417)
T ss_dssp             TSCHHHHHHHHHHHHHTTEEEEEE-EEEHHHHTCSS--TT--CCC----------CHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEE-eeeeeeeecCC--CC--ccC----------cHHHHHHHHHHHHcCCeEEE
Confidence            367899999999999999999977 544    2110  01  222          36899999999999998644

>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Alpha-galactosidase GalA catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.60  E-value=0.049  Score=40.52  Aligned_cols=59  Identities=12%  Similarity=0.116  Sum_probs=42.3

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.++.++++|++.|++---+...       ..|+..=..+|.   +++.|++.+|++|+++.+
T Consensus        21 ~e~~i~~~a~~~~~~g~~~i~iDdgW~~~-------~gd~~~d~~~FP---glk~l~~~~h~~G~k~gl   79 (348)
T d1zy9a2          21 TWEETLKNLKLAKNFPFEVFQIDDAYEKD-------IGDWLVTRGDFP---SVEEMAKVIAENGFIPGI   79 (348)
T ss_dssp             CHHHHHHHHHHGGGTTCSEEEECTTSEEE-------TTEEEEECTTCC---CHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHcCCCcEEEECcccccC-------CCCceECcccCc---CHHHHHHHHHhcCCEEEE
Confidence            45678888889999999999986433221       112221123455   589999999999999998

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.84  E-value=0.32  Score=35.03  Aligned_cols=46  Identities=22%  Similarity=0.151  Sum_probs=36.2

Q ss_pred             HHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         55 ITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        55 l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +.+-+++++++||++|.++--+-.-                   +.++..++|+.+.++|++|+-
T Consensus        87 ~~~y~~~~~~lGf~~iEiSdg~~~i-------------------~~~~~~~~I~~~~~~G~~V~~  132 (251)
T d1qwga_          87 FDEFLNECEKLGFEAVEISDGSSDI-------------------SLEERNNAIKRAKDNGFMVLT  132 (251)
T ss_dssp             HHHHHHHHHHHTCCEEEECCSSSCC-------------------CHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHcCCCEEEEcCCccCC-------------------CHHHHHHHHHHHHhCCCEEee
Confidence            3455779999999999998643211                   146888999999999999998

>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: YicI catalytic domain-like
domain: Putative glucosidase YicI, domain 2
species: Escherichia coli [TaxId: 562]

Probab=88.72  E-value=0.74  Score=33.50  Aligned_cols=61  Identities=13%  Similarity=0.185  Sum_probs=41.3

Q ss_pred             CHHHHHHhHHHHHHcC--CcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         51 DMRGITEKLDHFVDLG--IESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG--~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      +-+.+.+.++.+++.|  ++.|++-.-+...     |.-.+|.-=..+|-   +.+++++++|++|+++++
T Consensus        35 ~~~~v~~~~~~~r~~~iP~d~i~iD~~w~~~-----~~~~~f~~d~~~FP---dp~~~i~~l~~~G~~~~l   97 (338)
T d2f2ha4          35 DEATVNSFIDGMAERNLPLHVFHFDCFWMKA-----FQWCDFEWDPLTFP---DPEGMIRRLKAKGLKICV   97 (338)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEECGGGBCT-----TCCSSCCBCTTTCS---CHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCcceEEEcCchhcC-----CCcCceeeCcccCC---CHHHHHHHHHHCCCeEEE
Confidence            3456778888899888  7889886644322     11223322223344   578999999999999999

>d2hvma_ c.1.8.5 (A:) Hevamine A (chitinase/lysozyme) {Para rubber tree (Hevea brasiliensis) [TaxId: 3981]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Type II chitinase
domain: Hevamine A (chitinase/lysozyme)
species: Para rubber tree (Hevea brasiliensis) [TaxId: 3981]

Probab=87.11  E-value=0.24  Score=35.29  Aligned_cols=57  Identities=12%  Similarity=-0.050  Sum_probs=40.2

Q ss_pred             HHHHcCCcEEEEcCCccCCCCCCCCCccCC-CCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         61 HFVDLGIESLWIQPFYPAGGADLGYDVSNY-VDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        61 ~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~-~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      ++..-.+|+|.+.=+...+.  .++-..|+ ...+|..++.+++++.|+.||++|+||++
T Consensus        19 ~c~~~~~~~I~laF~~~~~~--g~~~~~~~~~~~~~~~~~~~~l~~~I~~~q~~g~KVll   76 (273)
T d2hvma_          19 TCSTRKYSYVNIAFLNKFGN--GQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQGIKVML   76 (273)
T ss_dssp             HHHTSCCSEEEEEEEEECST--TCCCEECCGGGCCCGGGTTTTHHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCEEEEEEEeEECC--CCeeeccccccCCCccCchhhHHHHHHHHHhCCCEEEE
Confidence            56667799999865543332  23334443 23456667778999999999999999999

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=85.27  E-value=1.6  Score=31.09  Aligned_cols=59  Identities=19%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVTKSFAN  129 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~~~~~~  129 (136)
                      ..++.+.+-+..++++|++.|.+.-+.+...-                 +.+.+++|++.|+  |+.+.+  |.+++...
T Consensus        69 ~E~~~M~~di~~~k~~G~dGvV~G~L~~dg~i-----------------D~~~~~~L~~~a~--~l~vTF--HRAfD~~~  127 (247)
T d1twda_          69 GEFAAILEDVRTVRELGFPGLVTGVLDVDGNV-----------------DMPRMEKIMAAAG--PLAVTF--HRAFDMCA  127 (247)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEECCBCTTSSB-----------------CHHHHHHHHHHHT--TSEEEE--CGGGGGCS
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEEEEECCCCCc-----------------cHHHHHHHHHHhc--ccCeee--ehhhhhhC
Confidence            45777788899999999999999887765431                 2467888988886  789999  87777654

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=84.14  E-value=2.7  Score=29.02  Aligned_cols=50  Identities=12%  Similarity=0.066  Sum_probs=40.0

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEecc
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFRE  122 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh  122 (136)
                      ++-....+.++.+.+.|++.|.+.|+-..                       .....++++.++||.|+++|+
T Consensus        40 ~d~~~q~~~i~~li~~~vDgiIi~~~~~~-----------------------~~~~~~~~a~~~giPVV~~d~   89 (305)
T d8abpa_          40 PDGEKTLNAIDSLAASGAKGFVICTPDPK-----------------------LGSAIVAKARGYDMKVIAVDD   89 (305)
T ss_dssp             CSHHHHHHHHHHHHHTTCCEEEEECSCGG-----------------------GHHHHHHHHHHTTCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcccccc-----------------------ccHHHHHHHHhcCCCEEEEcC
Confidence            34566777788888999999999986432                       378899999999999999544

>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Thermotoga maritima [TaxId: 2336]

Probab=83.88  E-value=1.2  Score=33.77  Aligned_cols=64  Identities=13%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccC--CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREV  123 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~  123 (136)
                      .-+.-..+-++-+++||+++.-++=-+..  |.. .|       .+|+  -..+-.++++++|+++||+.++ ..|-
T Consensus        54 d~y~~y~eDi~l~~~lG~~~yRfsi~WsRi~P~g-~g-------~~n~--~~~~~Y~~~i~~l~~~GI~P~VTL~Hf  120 (443)
T d2j78a1          54 DHYNRWKEDIEIIEKLGVKAYRFSISWPRILPEG-TG-------RVNQ--KGLDFYNRIIDTLLEKGITPFVTIYHW  120 (443)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEECCHHHHSTTS-SS-------CCCH--HHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred             chhhhhHHHHHHHHHcCCCEEEccCCHHHceeCC-CC-------CcCH--HHHHHHHHHHHHHHHcCCeeeEeecCc
Confidence            45677788899999999999999743321  110 01       1111  1256688999999999999999 6664

>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Bacillus polymyxa [TaxId: 1406]

Probab=83.62  E-value=0.71  Score=35.21  Aligned_cols=67  Identities=12%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||+++.-++=-+..-.. .|-.     .+|  --..+-.++++++++++||+.++ ..|-.
T Consensus        55 d~y~~y~eDi~l~~~lG~~~yRfSi~WsRI~P-~g~g-----~~n--~~gl~~Y~~~i~~l~~~gI~P~VTL~H~d  122 (447)
T d1e4ia_          55 DSYHRYEEDIRLMKELGIRTYRFSVSWPRIFP-NGDG-----EVN--QKGLDYYHRVVDLLNDNGIEPFCTLYHWD  122 (447)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEEEECCHHHHST-TSSS-----CCC--HHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chhHhhHHHHHHHHHhCCCEEEccCCHHHccc-CCCC-----CcC--HHHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence            34777888899999999999998743322110 0100     011  11234578999999999999999 66643

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=82.71  E-value=0.73  Score=29.56  Aligned_cols=44  Identities=14%  Similarity=0.160  Sum_probs=33.3

Q ss_pred             HHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Q psy12953         52 MRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTF  120 (136)
Q Consensus        52 ~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~  120 (136)
                      -..+.+.++.+.++|+.++|+.|=..                      .   +++++.|+++||+|+..
T Consensus        80 ~~~v~~~v~~~~~~g~k~i~~q~G~~----------------------~---~e~~~~a~~~Gi~vV~~  123 (136)
T d1iuka_          80 PSALMDHLPEVLALRPGLVWLQSGIR----------------------H---PEFEKALKEAGIPVVAD  123 (136)
T ss_dssp             HHHHTTTHHHHHHHCCSCEEECTTCC----------------------C---HHHHHHHHHTTCCEEES
T ss_pred             HHHHHHHHHHHHhhCCCeEEEecCcc----------------------C---HHHHHHHHHcCCEEEcC
Confidence            45567778899999999999965110                      1   25788899999999983

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.15  E-value=2.5  Score=28.15  Aligned_cols=69  Identities=10%  Similarity=0.090  Sum_probs=46.0

Q ss_pred             HHHHhHHHHHHcCCcEEEEcC--CccCCC-CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeccCC
Q psy12953         54 GITEKLDHFVDLGIESLWIQP--FYPAGG-ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRTFREVT  124 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~P--i~~~~~-~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil~nh~~  124 (136)
                      ...+.++.|++.|+++|+=.-  .++... ...|+...++...|-.--+.+++.++++.+.+.|-+|++  |..
T Consensus        46 ~~~~~l~~l~~~gi~~Ii~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~i~~~~~~~~~V~V--HC~  117 (182)
T d1ohea2          46 SPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAV--HSK  117 (182)
T ss_dssp             CTHHHHHHHHHTTEEEEEECSCCSSCTHHHHTTTCEEEECCCCTTCCCCHHHHHHHHHHHHSCSSEEEE--ECS
T ss_pred             CHHHHHHHHHhcCCCEEEEecCCCcCccccccCCcEEEecCCCCCCCcCHHHHHHHHHHHHcCCCcEEE--EeC
Confidence            345668899999999987432  111100 234555555555554344688999999999999999999  643

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=81.95  E-value=3.6  Score=25.95  Aligned_cols=68  Identities=12%  Similarity=0.061  Sum_probs=39.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCC-ccCC-CCCC---CCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPF-YPAG-GADL---GYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi-~~~~-~~~~---gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      |++.. ...++.|+++||++|.=..- .+.. ....   .+.+.|... ++-.-..++..++++++.+.|=+|++
T Consensus        14 G~~~~-a~~~~~L~~~gI~~Iin~~~~~~~~~~~~~~y~~i~i~D~~~-~~i~~~~~~~~~~i~~~~~~~~~VlV   86 (145)
T d1m3ga_          14 GSCSH-SSDLQGLQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQM-VEISAWFQEAIGFIDWVKNSGGRVLV   86 (145)
T ss_dssp             CCSTH-HHHHHHHHHHTCSEEEECSSSSSEEECSSSEEEECCCCCSTT-CCCTTSHHHHHHHHHHHHHTTCCEEE
T ss_pred             cChhh-hcCHHHHHHcCCcEEEEecCCCCcCCCCceEEEEEeccCCch-hhHHHHHHHHHHHHHHhhccCceEEE
Confidence            55544 45578899999999974321 1000 0011   111222111 11223478889999999999999999

>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Streptomyces sp. [TaxId: 1931]

Probab=81.85  E-value=0.82  Score=34.99  Aligned_cols=66  Identities=12%  Similarity=0.161  Sum_probs=45.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGAD-LGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~-~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||+++--++=-+..-... .|       .+|+  -..+-.+++|++|.++||+.|+ .+|-.
T Consensus        54 d~y~~y~eDi~l~~~lG~~~yRfSi~WsRI~P~g~g-------~~n~--~gl~~Y~~~i~~l~~~GI~P~VTL~Hfd  121 (464)
T d1gnxa_          54 DHYHRWREDVALMAELGLGAYRFSLAWPRIQPTGRG-------PALQ--KGLDFYRRLADELLAKGIQPVATLYHWD  121 (464)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEECCHHHHSGGGSS-------SCCH--HHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chhhhhHHHHHHHHHcCCCEEEccCCHHHcccCCCC-------CcCH--HHHHHHHHHHHHHHHcCCEEEEEEecCc
Confidence            346667888999999999999886533321100 11       1222  1356689999999999999999 77754

>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.82  E-value=0.98  Score=34.21  Aligned_cols=66  Identities=9%  Similarity=0.127  Sum_probs=43.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||+++.-++=-+..-..+.|       .+|+  -..+-.++++++++++||+.++ ..|-.
T Consensus        47 d~y~ry~eDi~ll~~lG~~~yRfSisWsRI~P~~g-------~~n~--~gl~~Y~~~i~~l~~~gI~P~VTL~H~d  113 (423)
T d1vffa1          47 NHWELYRDDIQLMTSLGYNAYRFSIEWSRLFPEEN-------KFNE--DAFMKYREIIDLLLTRGITPLVTLHHFT  113 (423)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCHHHHCSBTT-------BCCH--HHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chHHhhHHHHHHHHHhCCCEEEecCcHHHeecCCC-------ccCh--HHHHHHHHHHHHHHhcCCeeEEeecCCc
Confidence            44677788899999999999988642221110111       1111  1233469999999999999999 66643

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.62  E-value=0.01  Score=45.82  Aligned_cols=48  Identities=4%  Similarity=-0.199  Sum_probs=44.2

Q ss_pred             CCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE---eccCCCccCCCC
Q psy12953         84 GYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT---FREVTKSFANNQ  131 (136)
Q Consensus        84 gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil---~nh~~~~~~~~~  131 (136)
                      ||++.++..+++.+|+.+++..+..++|.+|+++++   .||++..|.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  138 (563)
T d2fhfa5          88 DKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNP  138 (563)
T ss_dssp             GGCCCTTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBC
T ss_pred             ccccccccccccccccccccchhhhhhhccccchhhhhhhcccccccchhh
Confidence            677888888999999999999999999999999999   999999998875

>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Thioglucosidase
species: Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]

Probab=80.97  E-value=1.5  Score=33.33  Aligned_cols=66  Identities=9%  Similarity=0.048  Sum_probs=44.8

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCC--CCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGG--ADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      .-+....+-++-+++||+++--++=-+..-.  +..|       .+|  --..+-.+++|++|+++||+.++ .+|-.
T Consensus        54 d~y~ry~eDi~l~~~lG~~~yRfSi~WsRI~P~G~~g-------~~n--~~gl~~Y~~~i~~l~~~GI~P~vTL~Hfd  122 (462)
T d1wcga1          54 DSYHKYKEDVAIIKDLNLKFYRFSISWARIAPSGVMN-------SLE--PKGIAYYNNLINELIKNDIIPLVTMYHWD  122 (462)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEEEEECCHHHHSTTSCTT-------SCC--HHHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             chhhhhHHHHHHHHHhCCCEEEeeCcHHHcccCCCCC-------CcC--HHHHHHHHHHHHHHHhcCCeeEEEecccc
Confidence            3466778889999999999998865332211  0001       011  11245689999999999999999 77743

>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Thermus thermophilus [TaxId: 274]

Probab=80.90  E-value=0.97  Score=34.14  Aligned_cols=64  Identities=14%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             CHHHHHHhHHHHHHcCCcEEEEcCCccC--CCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE-eccCC
Q psy12953         51 DMRGITEKLDHFVDLGIESLWIQPFYPA--GGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT-FREVT  124 (136)
Q Consensus        51 ~~~~l~~~l~~l~~lG~~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil-~nh~~  124 (136)
                      -+....+-++.+++||+++.-++=-+..  |.+ .|       .+|+  ...+-..+++++|.++||+.++ ..|-.
T Consensus        52 ~y~~y~eDi~ll~~lG~~~yRfsi~WsRI~P~g-~g-------~~n~--~gl~~Y~~~i~~l~~~GI~P~VTL~Hfd  118 (426)
T d1ug6a_          52 HYRRYEEDIALMQSLGVRAYRFSVAWPRILPEG-RG-------RINP--KGLAFYDRLVDRLLASGITPFLTLYHWD  118 (426)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCHHHHSTTS-SS-------CCCH--HHHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred             hhhhhHHHHHHHHHcCCCEEEccCCHHHcccCC-CC-------CcCh--HHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            4677888899999999999999743322  110 11       1222  1256789999999999999999 66643

>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping white clover (Trifolium repens) [TaxId: 3899]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Plant beta-glucosidase (myrosinase)
species: Creeping white clover (Trifolium repens) [TaxId: 3899]

Probab=80.71  E-value=0.68  Score=35.76  Aligned_cols=61  Identities=15%  Similarity=0.236  Sum_probs=44.4

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCC--------CCCHHHHHHHHHHHHHCCCcEEE-e
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPL--------FGDMHDFEILIEEAHSRGKPKRT-F  120 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~--------~Gt~~~~~~lv~~ah~~Gi~vil-~  120 (136)
                      .-+....+-++-+++||+++.-++=-+.              +|-|.        --..+-.++++++++++||+.++ .
T Consensus        70 d~y~~y~eDi~l~~~lG~~~yRfSi~Ws--------------RI~P~g~~~g~~n~~gl~~Y~~~i~~l~~~GIeP~vTL  135 (490)
T d1cbga_          70 DEYHRYKEDIGIMKDMNLDAYRFSISWP--------------RVLPKGKLSGGVNREGINYYNNLINEVLANGMQPYVTL  135 (490)
T ss_dssp             CHHHHHHHHHHHHHHTTCCEEEEECCHH--------------HHSTTSSGGGCCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             chhhhhHHHHHHHHHcCCCEEEccCCHH--------------HcCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence            4467778889999999999999874222              12221        01245589999999999999999 7


Q ss_pred             ccCC
Q psy12953        121 REVT  124 (136)
Q Consensus       121 nh~~  124 (136)
                      +|-.
T Consensus       136 ~Hfd  139 (490)
T d1cbga_         136 FHWD  139 (490)
T ss_dssp             ESSC
T ss_pred             ecCC
Confidence            7754

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=80.52  E-value=0.33  Score=34.06  Aligned_cols=66  Identities=11%  Similarity=0.051  Sum_probs=40.4

Q ss_pred             HHHHhHHHHHHcCCcEEEEcCCccCCC--------------CCCCCCccCC------CCCCCC--CCCHHHHHHHHHHHH
Q psy12953         54 GITEKLDHFVDLGIESLWIQPFYPAGG--------------ADLGYDVSNY------VDVDPL--FGDMHDFEILIEEAH  111 (136)
Q Consensus        54 ~l~~~l~~l~~lG~~~I~l~Pi~~~~~--------------~~~gY~~~d~------~~vd~~--~Gt~~~~~~lv~~ah  111 (136)
                      .+.+.++.++++|++.|.+.+....+.              ...|-.+..+      ...++.  =...+.+++.++.|+
T Consensus        15 ~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~   94 (278)
T d1i60a_          15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCK   94 (278)
T ss_dssp             CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCcCEEEeCCccccccccCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            688889999999999999976532110              0112221111      111110  011357888999999


Q ss_pred             HCCCcEEE
Q psy12953        112 SRGKPKRT  119 (136)
Q Consensus       112 ~~Gi~vil  119 (136)
                      +.|.+.+.
T Consensus        95 ~lG~~~i~  102 (278)
T d1i60a_          95 TLGVKYVV  102 (278)
T ss_dssp             HHTCCEEE
T ss_pred             HcCCCccc
Confidence            99999887

>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exochitosanase CsxA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=80.29  E-value=1.5  Score=31.04  Aligned_cols=45  Identities=16%  Similarity=0.260  Sum_probs=34.7

Q ss_pred             CCHHHHHHhHHHHHHcCCcEEEEcCCccCCCCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEE
Q psy12953         50 GDMRGITEKLDHFVDLGIESLWIQPFYPAGGADLGYDVSNYVDVDPLFGDMHDFEILIEEAHSRGKPKRT  119 (136)
Q Consensus        50 g~~~~l~~~l~~l~~lG~~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~~~~~lv~~ah~~Gi~vil  119 (136)
                      .+-+.+.+.|..+|++|+|+|-+--.   +.              +        .++.++|.+.||-|+.
T Consensus        36 ~~~~~~~~~l~~~k~~G~N~iR~~~~---~~--------------~--------~~f~d~~D~~Gi~V~~   80 (339)
T d2vzsa5          36 WNETAAADKLKYVLNLGLNTVRLEGH---IE--------------P--------DEFFDIADDLGVLTMP   80 (339)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEESC---CC--------------C--------HHHHHHHHHHTCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEecCC---CC--------------C--------HHHHHHHHHCCCeEec
Confidence            46677888899999999999997311   10              0        4588889999999987