Psyllid ID: psy13007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Secondary Structure (PSIPRED)
ccccccccccccccccccEEHHHHHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHEEEEEEEEEEEEEHHHEEEEEccc
Coil and Loop (DISEMBL)
mndsqyedlawgpqhdplyvifPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIwhkypymfDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Flexible Loop (DISEMBL)
MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Low Complexity Region (SEG)
MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Disordered region (IsUnstruct)
********LAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH**
Disordered Region (DISOPRED)
*******DLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Disordered Region (DISEMBL)
********LAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Disordered Region (DISPRO)
*******DLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q8ITC7	477	Neuropeptides capa recept	no	N/A	0.906	0.243	0.525	9e-26
Q8BZ39	395	Neuromedin-U receptor 2 O	yes	N/A	0.968	0.313	0.476	4e-25
Q9ESQ4	395	Neuromedin-U receptor 2 O	yes	N/A	0.898	0.291	0.487	1e-23
Q9GZQ4	415	Neuromedin-U receptor 2 O	yes	N/A	0.968	0.298	0.468	4e-23
O55040	405	Neuromedin-U receptor 1 O	no	N/A	0.898	0.283	0.461	1e-22
Q58CW4	407	Neuromedin-U receptor 2 O	yes	N/A	0.976	0.307	0.464	1e-20
O43193	412	Motilin receptor OS=Homo	no	N/A	0.867	0.269	0.410	2e-19
A5A4K9	366	Growth hormone secretagog	yes	N/A	0.960	0.336	0.417	2e-19
Q92847	366	Growth hormone secretagog	no	N/A	0.953	0.333	0.420	3e-19
O08725	364	Growth hormone secretagog	no	N/A	0.812	0.285	0.447	2e-18

>sp|Q8ITC7|CAPAR_DROME Neuropeptides capa receptor OS=Drosophila melanogaster GN=capaR PE=2 SV=3

 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 81/116 (69%)

Query: 12  GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML 71
           GPQ  PLY    +T+I+  I +TG  GNL  C+VI R+  MHTATNYYLFSLAVSDLL L
Sbjct: 59  GPQTLPLYKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYYLFSLAVSDLLYL 118

Query: 72  FWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
            +G+P+E+   WH+YP +F    C + +F+SE     +V TI AF++ER++AICHP
Sbjct: 119 LFGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSMERFLAICHP 174

Acts as a receptor for the neuropeptides CAP-1 and CAP-2, but not CAP-3. Probably a component of signal transduction pathway that leads to Malpighian tubule fluid secretion in response to these ligands.
Drosophila melanogaster (taxid: 7227)

>sp|Q8BZ39|NMUR2_MOUSE Neuromedin-U receptor 2 OS=Mus musculus GN=Nmur2 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 86/128 (67%), Gaps = 4/128 (3%)

Query: 3   DSQYEDLAW--GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
           +S  E LA+  GP+   L +  PV+V+Y +I V G  GNL  C+VIAR++ + T TNYYL
Sbjct: 19  NSTEEYLAYLCGPKRSDLSL--PVSVVYALIFVVGVIGNLLVCLVIARHQTLKTPTNYYL 76

Query: 61  FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
           FSLAVSDLL+L  G+P E+  +WH YP++F    C   + L ET   A++L++T  ++ER
Sbjct: 77  FSLAVSDLLVLLLGMPLEVYELWHNYPFLFGPVGCYFKTALFETVCFASILSVTTVSIER 136

Query: 121 YIAICHPF 128
           Y+AI HPF
Sbjct: 137 YVAIVHPF 144

Receptor for the neuromedin-U and neuromedin-S neuropeptides.

Mus musculus (taxid: 10090)

>sp|Q9ESQ4|NMUR2_RAT Neuromedin-U receptor 2 OS=Rattus norvegicus GN=Nmur2 PE=1 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%)

Query: 12  GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML 71
           GP+   L +  PV+V Y +I + G  GNL  C+VI R++ + T TNYYLFSLAVSDLL+L
Sbjct: 30  GPKRSDLSL--PVSVAYALIFLVGVMGNLLVCMVIVRHQTLKTPTNYYLFSLAVSDLLVL 87

Query: 72  FWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
             G+P EI  +WH YP++F    C   + L ET   A++L++T  +VERY+AI HPF
Sbjct: 88  LLGMPLEIYEMWHNYPFLFGPVGCYFKTALFETVCFASILSVTTVSVERYVAIVHPF 144

Receptor for the neuromedin-U and neuromedin-S neuropeptides.

Rattus norvegicus (taxid: 10116)

>sp|Q9GZQ4|NMUR2_HUMAN Neuromedin-U receptor 2 OS=Homo sapiens GN=NMUR2 PE=2 SV=2

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 4/128 (3%)

Query: 3   DSQYEDLAW--GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
           +S  E LA+  GP+    ++  PV+V+YV I V G  GN+  C+VI +++ M T TNYYL
Sbjct: 27  NSTEEYLAFLCGPRRSHFFL--PVSVVYVPIFVVGVIGNVLVCLVILQHQAMKTPTNYYL 84

Query: 61  FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
           FSLAVSDLL+L  G+P E+  +W  YP++F    C   + L ET   A++L+IT  +VER
Sbjct: 85  FSLAVSDLLVLLLGMPLEVYEMWRNYPFLFGPVGCYFKTALFETVCFASILSITTVSVER 144

Query: 121 YIAICHPF 128
           Y+AI HPF
Sbjct: 145 YVAILHPF 152

Receptor for the neuromedin-U and neuromedin-S neuropeptides.

Homo sapiens (taxid: 9606)

>sp|O55040|NMUR1_MOUSE Neuromedin-U receptor 1 OS=Mus musculus GN=Nmur1 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 2/117 (1%)

Query: 12  GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML 71
           GPQ    +V  P+ V Y++I V G  GN  TC VI RNK M T TN+YLFSLAVSD+L+L
Sbjct: 30  GPQQMKQFV--PICVTYLLIFVVGTLGNGLTCTVILRNKTMRTPTNFYLFSLAVSDMLVL 87

Query: 72  FWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
             G+P E+  +   YP+    + C     L ET   A+VL +TA +VERY+A+  P 
Sbjct: 88  LVGLPLELYEMQQNYPFQLGASACYFRILLLETVCLASVLNVTALSVERYVAVVRPL 144

Receptor for the neuromedin-U and neuromedin-S neuropeptides.

Mus musculus (taxid: 10090)

>sp|Q58CW4|NMUR2_BOVIN Neuromedin-U receptor 2 OS=Bos taurus GN=NMUR2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 81/127 (63%), Gaps = 2/127 (1%)

Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           N   Y  L  GP+   L++  PVT +Y +I V G  GNL  C+VI R++ M T TNYYLF
Sbjct: 25  NTDDYLALLCGPRRSHLFL--PVTAVYALIFVVGVVGNLLVCLVILRHQTMKTPTNYYLF 82

Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLAVSDLL+L  G+P E+  +W  YP++F    C   + L ET   A++L++T  +VERY
Sbjct: 83  SLAVSDLLVLLLGMPLEVYEMWRNYPFLFGPVGCYFKTALFETVCFASILSVTTVSVERY 142

Query: 122 IAICHPF 128
           +A+ HPF
Sbjct: 143 VAVLHPF 149

Receptor for the neuromedin-U and neuromedin-S neuropeptides.

Bos taurus (taxid: 9913)

>sp|O43193|MTLR_HUMAN Motilin receptor OS=Homo sapiens GN=MLNR PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 17  PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
           PL  + PVT + + + V G  GN+ T ++I R + M T TN YL S+AVSDLL+L  G+P
Sbjct: 34  PLGALVPVTAVCLCLFVVGVSGNVVTVMLIGRYRDMRTTTNLYLGSMAVSDLLILL-GLP 92

Query: 77  SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
            ++  +W   P++F   +C +  ++ E    AT+L +TA +VERY+AIC P 
Sbjct: 93  FDLYRLWRSRPWVFGPLLCRLSLYVGEGCTYATLLHMTALSVERYLAICRPL 144

Receptor for motilin.

Homo sapiens (taxid: 9606)

>sp|A5A4K9|GHSR_RABIT Growth hormone secretagogue receptor type 1 OS=Oryctolagus cuniculus GN=GHSR PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 4/127 (3%)

Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           NDS  ++L    Q  P  ++  VT   V + V G  GNL T +V++R + + T TN YL 
Sbjct: 27  NDSLADELL---QLFPAPLLAGVTATCVALFVVGIAGNLLTMLVVSRFRELRTTTNLYLS 83

Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           S+A SDLL +F  +P +++ +W   P+ F + +C +  F+SE+   ATVLTITA +VERY
Sbjct: 84  SMAFSDLL-IFLCMPLDLVRLWQYRPWNFGDLLCKLFQFVSESCTYATVLTITALSVERY 142

Query: 122 IAICHPF 128
            AIC P 
Sbjct: 143 FAICFPL 149

Receptor for ghrelin, coupled to G-alpha-11 proteins. Stimulates growth hormone secretion. Binds also other growth hormone releasing peptides (GHRP) (e.g. Met-enkephalin and GHRP-6) as well as non-peptide, low molecular weight secretagogues (e.g. L-692,429, MK-0677, adenosine).

Oryctolagus cuniculus (taxid: 9986)

>sp|Q92847|GHSR_HUMAN Growth hormone secretagogue receptor type 1 OS=Homo sapiens GN=GHSR PE=1 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 4/126 (3%)

Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           NDS  ++L    Q  P  ++  VT   V + V G  GNL T +V++R + + T TN YL 
Sbjct: 27  NDSLGDELL---QLFPAPLLAGVTATCVALFVVGIAGNLLTMLVVSRFRELRTTTNLYLS 83

Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           S+A SDLL +F  +P +++ +W   P+ F + +C +  F+SE+   ATVLTITA +VERY
Sbjct: 84  SMAFSDLL-IFLCMPLDLVRLWQYRPWNFGDLLCKLFQFVSESCTYATVLTITALSVERY 142

Query: 122 IAICHP 127
            AIC P
Sbjct: 143 FAICFP 148

Receptor for ghrelin, coupled to G-alpha-11 proteins. Stimulates growth hormone secretion. Binds also other growth hormone releasing peptides (GHRP) (e.g. Met-enkephalin and GHRP-6) as well as non-peptide, low molecular weight secretagogues (e.g. L-692,429, MK-0677, adenosine).

Homo sapiens (taxid: 9606)

>sp|O08725|GHSR_RAT Growth hormone secretagogue receptor type 1 OS=Rattus norvegicus GN=Ghsr PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 1/105 (0%)

Query: 24  VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW 83
           VT   V + V G  GNL T +V++R + + T TN YL S+A SDLL +F  +P +++ +W
Sbjct: 45  VTATCVALFVVGISGNLLTMLVVSRFRELRTTTNLYLSSMAFSDLL-IFLCMPLDLVRLW 103

Query: 84  HKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
              P+ F + +C +  F+SE+   ATVLTITA +VERY AIC P 
Sbjct: 104 QYRPWNFGDLLCKLFQFVSESCTYATVLTITALSVERYFAICFPL 148

Receptor for ghrelin, coupled to G-alpha-11 proteins. Stimulates growth hormone secretion. Binds also other growth hormone releasing peptides (GHRP) (e.g. Met-enkephalin and GHRP-6) as well as non-peptide, low molecular weight secretagogues (e.g. L-692,429, MK-0677, adenosine).

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
270001282	557	hypothetical protein TcasGA2_TC011320 [T	0.921	0.211	0.661	2e-44
148277572	581	pyrokinin-like receptor 2 [Apis mellifer	0.953	0.209	0.701	6e-44
383856235	659	PREDICTED: G-protein coupled receptor 16	0.984	0.191	0.619	9e-44
119151364	501	TPA_inf: pyrokinin-receptor-like G prote	0.953	0.243	0.701	9e-44
312379232	448	hypothetical protein AND_08986 [Anophele	0.921	0.263	0.661	1e-43
189241569	380	PREDICTED: similar to pyrokinin-receptor	0.921	0.310	0.661	2e-43
380020929	577	PREDICTED: neuropeptides capa receptor-l	0.953	0.211	0.685	2e-43
118780947	493	AGAP000658-PA [Anopheles gambiae str. PE	0.921	0.239	0.661	2e-43
350420292	564	PREDICTED: neuropeptides capa receptor-l	0.898	0.203	0.704	3e-43
340713232	567	PREDICTED: neuromedin-U receptor 2-like	0.898	0.202	0.704	3e-43

>gi|270001282|gb|EEZ97729.1| hypothetical protein TcasGA2_TC011320 [Tribolium castaneum]

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/118 (66%), Positives = 96/118 (81%)

Query: 11  WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
           WGP+ DPL ++ P+T++Y +  V+G  GN+ TC+VIARNK MHTATNYYLFSLA+SDLL+
Sbjct: 38  WGPRRDPLAIVIPITIVYALTFVSGVVGNVSTCIVIARNKSMHTATNYYLFSLAISDLLL 97

Query: 71  LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           L  G+P EI  IW +YPY+F E  C+M  F +ETSANATVLTITAFTVERY+AICHPF
Sbjct: 98  LVSGLPPEIYLIWSRYPYIFGEAFCVMQGFAAETSANATVLTITAFTVERYVAICHPF 155

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148277572|ref|NP_001091688.1| pyrokinin-like receptor 2 [Apis mellifera] gi|115529788|gb|ABJ09598.1| pyrokinin-like receptor 2 [Apis mellifera]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 100/124 (80%), Gaps = 2/124 (1%)

Query: 5   QYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLA 64
           Q ED +   + DPLY++ P+TVIY +I VTG  GN+ TCVVIARNK MHTATNYYLFSLA
Sbjct: 39  QQEDSSI--RRDPLYIVLPITVIYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLA 96

Query: 65  VSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAI 124
           VSDLL+L  G+P EI YIW  +PY+F E  CI+ SF +ETSANATVLTITAFTVERYIAI
Sbjct: 97  VSDLLLLISGLPPEIYYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYIAI 156

Query: 125 CHPF 128
           CHPF
Sbjct: 157 CHPF 160

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856235|ref|XP_003703615.1| PREDICTED: G-protein coupled receptor 161-like [Megachile rotundata]

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/126 (61%), Positives = 100/126 (79%)

Query: 3   DSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFS 62
           D+ ++D+   P+ D L+++ PVT+IY  I VTG  GN+ TC+VIARNK MHTATNYYLFS
Sbjct: 32  DNYFQDIVHPPRRDSLFIVVPVTIIYASIFVTGTIGNISTCIVIARNKSMHTATNYYLFS 91

Query: 63  LAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYI 122
           LAVSDLL+L  G+P+EI  +W+KYPY+F E  C++    +ETS NA+VLTITAFTVERY+
Sbjct: 92  LAVSDLLLLVCGLPAEIFLVWYKYPYIFGEGFCVLRGLAAETSTNASVLTITAFTVERYV 151

Query: 123 AICHPF 128
           AICHPF
Sbjct: 152 AICHPF 157

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119151364|tpg|DAA05842.1| TPA_inf: pyrokinin-receptor-like G protein-coupled receptor [Apis mellifera]

 Score =  181 bits (459), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 100/124 (80%), Gaps = 2/124 (1%)

Query: 5   QYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLA 64
           Q ED +   + DPLY++ P+TVIY +I VTG  GN+ TCVVIARNK MHTATNYYLFSLA
Sbjct: 39  QQEDSSI--RRDPLYIVLPITVIYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLA 96

Query: 65  VSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAI 124
           VSDLL+L  G+P EI YIW  +PY+F E  CI+ SF +ETSANATVLTITAFTVERYIAI
Sbjct: 97  VSDLLLLISGLPPEIYYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYIAI 156

Query: 125 CHPF 128
           CHPF
Sbjct: 157 CHPF 160

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379232|gb|EFR25574.1| hypothetical protein AND_08986 [Anopheles darlingi]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 98/118 (83%)

Query: 11  WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
           +GP+ DPLYV+ P+T+IY++I V+G  GN+ TC+VIA+NK MHTATNYYLFSLAVSD ++
Sbjct: 81  YGPKRDPLYVVIPITIIYLLIFVSGVVGNISTCIVIAKNKSMHTATNYYLFSLAVSDFVL 140

Query: 71  LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           L  G+P EI +IW KYPY+F E  C++    +ETSANATVLTITAFTVERY+AICHPF
Sbjct: 141 LISGVPQEIYFIWSKYPYVFGEAFCVLRGIAAETSANATVLTITAFTVERYVAICHPF 198

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241569|ref|XP_968729.2| PREDICTED: similar to pyrokinin-receptor-like G protein-coupled receptor [Tribolium castaneum]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 96/118 (81%)

Query: 11  WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
           WGP+ DPL ++ P+T++Y +  V+G  GN+ TC+VIARNK MHTATNYYLFSLA+SDLL+
Sbjct: 38  WGPRRDPLAIVIPITIVYALTFVSGVVGNVSTCIVIARNKSMHTATNYYLFSLAISDLLL 97

Query: 71  LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           L  G+P EI  IW +YPY+F E  C+M  F +ETSANATVLTITAFTVERY+AICHPF
Sbjct: 98  LVSGLPPEIYLIWSRYPYIFGEAFCVMQGFAAETSANATVLTITAFTVERYVAICHPF 155

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020929|ref|XP_003694328.1| PREDICTED: neuropeptides capa receptor-like [Apis florea]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 100/124 (80%), Gaps = 2/124 (1%)

Query: 5   QYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLA 64
           Q ED +   + DPLY++ P+TVIY +I VTG  GN+ TCVVIARNK MHTATNYYLFSLA
Sbjct: 35  QQEDSSI--RRDPLYIVLPITVIYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLA 92

Query: 65  VSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAI 124
           VSDLL+L  G+P E+ YIW  +PY+F E  CI+ SF +ETSANATVLTITAFTVERY+AI
Sbjct: 93  VSDLLLLISGLPPEMYYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYVAI 152

Query: 125 CHPF 128
           CHPF
Sbjct: 153 CHPF 156

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118780947|ref|XP_311184.3| AGAP000658-PA [Anopheles gambiae str. PEST] gi|34419232|tpg|DAA01375.1| TPA_exp: putative pyrokinin receptor [Anopheles gambiae str. PEST] gi|116130188|gb|EAA06972.3| AGAP000658-PA [Anopheles gambiae str. PEST]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 97/118 (82%)

Query: 11  WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
           +GP+ DPLYV+ P+T+IY++I +TG  GN+ TC+VIARN+ MHTATNYYLFSLAVSD L+
Sbjct: 88  YGPKRDPLYVVIPITIIYLLIFITGVVGNISTCIVIARNRSMHTATNYYLFSLAVSDFLL 147

Query: 71  LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           L  G+P EI +IW KYPY+F ET C++    +E SANATVLTITAFT+ERY AICHPF
Sbjct: 148 LVSGVPQEIYFIWSKYPYVFGETFCVLRGIAAEMSANATVLTITAFTIERYFAICHPF 205

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420292|ref|XP_003492463.1| PREDICTED: neuropeptides capa receptor-like [Bombus impatiens]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 96/115 (83%)

Query: 14  QHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFW 73
           + DPLY++ P+TVIY +I +TG  GN+ TCVVIARNK MHTATNYYLFSLAVSDLL+L  
Sbjct: 37  RRDPLYIVLPITVIYTVIFLTGLIGNVSTCVVIARNKSMHTATNYYLFSLAVSDLLLLIS 96

Query: 74  GIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           G+P E+ YIW  +PY+F E  CI+ SF +ETSANATVLTITAFTVERY+AICHPF
Sbjct: 97  GLPPEMCYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYVAICHPF 151

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713232|ref|XP_003395149.1| PREDICTED: neuromedin-U receptor 2-like [Bombus terrestris]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 96/115 (83%)

Query: 14  QHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFW 73
           + DPLY++ P+TVIY +I +TG  GN+ TCVVIARNK MHTATNYYLFSLAVSDLL+L  
Sbjct: 37  RRDPLYIVLPITVIYAVIFLTGLIGNVSTCVVIARNKSMHTATNYYLFSLAVSDLLLLIS 96

Query: 74  GIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           G+P E+ YIW  +PY+F E  CI+ SF +ETSANATVLTITAFTVERY+AICHPF
Sbjct: 97  GLPPEMYYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYVAICHPF 151

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0038201	430	Pk1r "Pyrokinin 1 receptor" [D	0.914	0.272	0.675	1.4e-41
FB|FBgn0038139	599	CG8795 [Drosophila melanogaste	0.875	0.186	0.589	4.8e-33
FB|FBgn0038140	660	CG8784 [Drosophila melanogaste	0.906	0.175	0.603	2.1e-32
FB|FBgn0037100	477	capaR "capa receptor" [Drosoph	0.984	0.264	0.507	3.8e-30
UNIPROTKB|F1RQB8	407	NMUR2 "Uncharacterized protein	0.976	0.307	0.472	1.3e-27
MGI|MGI:2441765	395	Nmur2 "neuromedin U receptor 2	0.968	0.313	0.476	1.3e-27
UNIPROTKB|Q58CW4	407	NMUR2 "Neuromedin-U receptor 2	0.976	0.307	0.464	2.8e-27
ZFIN|ZDB-GENE-081104-220	395	si:ch211-276k2.5 "si:ch211-276	0.976	0.316	0.433	5.7e-27
RGD|621155	395	Nmur2 "neuromedin U receptor 2	0.898	0.291	0.487	3.2e-26
WB|WBGene00019616	403	nmur-2 [Caenorhabditis elegans	0.843	0.267	0.495	3.2e-26

FB|FBgn0038201 Pk1r "Pyrokinin 1 receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 79/117 (67%), Positives = 94/117 (80%)

Query:    12 GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML 71
             GP  DPL ++ PVTV+Y +I +TG  GN+ TC+VI +N+ MHTATNYYLFSLA+SD L+L
Sbjct:    11 GPPRDPLAIVIPVTVVYSLIFITGVVGNISTCIVIKKNRSMHTATNYYLFSLAISDFLLL 70

Query:    72 FWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
               G+P E+ YIW KYPY+F E ICI    L+ETSANATVLTITAFTVERYIAICHPF
Sbjct:    71 LSGVPQEVSYIWSKYPYVFGEYICIGRGLLAETSANATVLTITAFTVERYIAICHPF 127

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0016520 "growth hormone-releasing hormone receptor activity" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA;NAS

GO:0004930 "G-protein coupled receptor activity" evidence=ISS;IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

FB|FBgn0038139 CG8795 [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 4.8e-33, P = 4.8e-33
 Identities = 66/112 (58%), Positives = 88/112 (78%)

Query:    17 PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
             PL ++  ++V Y +I + G  GNL TC+VI+RN  MHTATN+YLF+LA+SD+++L  G+P
Sbjct:    62 PLSLLATLSVGYALIFIAGVLGNLITCIVISRNNFMHTATNFYLFNLAISDMILLCSGMP 121

Query:    77 SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
              ++  +WH   Y F ++ICI+ S LSET+ANATVLTITAFTVERYIAICHPF
Sbjct:   122 QDLYNLWHPDNYPFSDSICILESVLSETAANATVLTITAFTVERYIAICHPF 173

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0016520 "growth hormone-releasing hormone receptor activity" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA;NAS

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004930 "G-protein coupled receptor activity" evidence=ISS;IDA

FB|FBgn0038140 CG8784 [Drosophila melanogaster (taxid:7227)]

 Score = 361 (132.1 bits), Expect = 2.1e-32, P = 2.1e-32
 Identities = 70/116 (60%), Positives = 86/116 (74%)

Query:    13 PQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLF 72
             P  + L +   +TV Y +I V G  GNL TC+VI+RN  MHTATN+YLF+LAVSDL++L 
Sbjct:    99 PVDESLTLRTALTVCYALIFVAGVLGNLITCIVISRNNFMHTATNFYLFNLAVSDLILLV 158

Query:    73 WGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
              GIP E+  +W+   Y F + +CIM S LSE +ANATVLTITAFTVERYIAICHPF
Sbjct:   159 SGIPQELYNLWYPDMYPFTDAMCIMGSVLSEMAANATVLTITAFTVERYIAICHPF 214

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS;NAS

GO:0016520 "growth hormone-releasing hormone receptor activity" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA;NAS

GO:0004930 "G-protein coupled receptor activity" evidence=ISS;IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

FB|FBgn0037100 capaR "capa receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 65/128 (50%), Positives = 87/128 (67%)

Query:     2 NDSQYEDLAW--GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYY 59
             N S  E +A+  GPQ  PLY    +T+I+  I +TG  GNL  C+VI R+  MHTATNYY
Sbjct:    47 NCSPKEFVAFVLGPQTLPLYKAVLITIIFGGIFITGVVGNLLVCIVIIRHSAMHTATNYY 106

Query:    60 LFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVE 119
             LFSLAVSDLL L +G+P+E+   WH+YP +F    C + +F+SE     +V TI AF++E
Sbjct:   107 LFSLAVSDLLYLLFGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYVSVFTIVAFSME 166

Query:   120 RYIAICHP 127
             R++AICHP
Sbjct:   167 RFLAICHP 174

GO:0004930 "G-protein coupled receptor activity" evidence=ISS;IDA

GO:0008188 "neuropeptide receptor activity" evidence=ISS;NAS;IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007589 "body fluid secretion" evidence=TAS

GO:0001607 "neuromedin U receptor activity" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0071465 "cellular response to desiccation" evidence=IMP

UNIPROTKB|F1RQB8 NMUR2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 60/127 (47%), Positives = 82/127 (64%)

Query:     2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
             N   Y  L  GP+   L++  PVTV+Y +I V G  GN+  C+VI R++ M T TNYYLF
Sbjct:    25 NTDDYLALLCGPRRSHLFL--PVTVVYALIFVVGVAGNILVCLVILRHQTMKTPTNYYLF 82

Query:    62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
             SLAVSDLL+L  G+P E+  +W  YP++F    C   + L ET   A++L++T  +VERY
Sbjct:    83 SLAVSDLLVLLLGMPLEVYEMWRNYPFLFGSVGCYFKTALFETVCFASILSVTTVSVERY 142

Query:   122 IAICHPF 128
             +AI HPF
Sbjct:   143 VAILHPF 149

GO:0050482 "arachidonic acid secretion" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0048016 "inositol phosphate-mediated signaling" evidence=IEA

GO:0043006 "activation of phospholipase A2 activity by calcium-mediated signaling" evidence=IEA

GO:0042924 "neuromedin U binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005229 "intracellular calcium activated chloride channel activity" evidence=IEA

GO:0002023 "reduction of food intake in response to dietary excess" evidence=IEA

GO:0001607 "neuromedin U receptor activity" evidence=IEA

MGI|MGI:2441765 Nmur2 "neuromedin U receptor 2" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/128 (47%), Positives = 86/128 (67%)

Query:     3 DSQYEDLAW--GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
             +S  E LA+  GP+   L +  PV+V+Y +I V G  GNL  C+VIAR++ + T TNYYL
Sbjct:    19 NSTEEYLAYLCGPKRSDLSL--PVSVVYALIFVVGVIGNLLVCLVIARHQTLKTPTNYYL 76

Query:    61 FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
             FSLAVSDLL+L  G+P E+  +WH YP++F    C   + L ET   A++L++T  ++ER
Sbjct:    77 FSLAVSDLLVLLLGMPLEVYELWHNYPFLFGPVGCYFKTALFETVCFASILSVTTVSIER 136

Query:   121 YIAICHPF 128
             Y+AI HPF
Sbjct:   137 YVAIVHPF 144

GO:0001607 "neuromedin U receptor activity" evidence=ISO

GO:0002023 "reduction of food intake in response to dietary excess" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005229 "intracellular calcium activated chloride channel activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0007218 "neuropeptide signaling pathway" evidence=IDA;IPI

GO:0007268 "synaptic transmission" evidence=IPI

GO:0007625 "grooming behavior" evidence=IMP

GO:0008188 "neuropeptide receptor activity" evidence=ISO;IPI

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO;IC

GO:0042924 "neuromedin U binding" evidence=ISO

GO:0043006 "activation of phospholipase A2 activity by calcium-mediated signaling" evidence=ISO

GO:0048016 "inositol phosphate-mediated signaling" evidence=ISO

GO:0048265 "response to pain" evidence=IMP

GO:0050482 "arachidonic acid secretion" evidence=ISO

UNIPROTKB|Q58CW4 NMUR2 "Neuromedin-U receptor 2" [Bos taurus (taxid:9913)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 59/127 (46%), Positives = 81/127 (63%)

Query:     2 NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
             N   Y  L  GP+   L++  PVT +Y +I V G  GNL  C+VI R++ M T TNYYLF
Sbjct:    25 NTDDYLALLCGPRRSHLFL--PVTAVYALIFVVGVVGNLLVCLVILRHQTMKTPTNYYLF 82

Query:    62 SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
             SLAVSDLL+L  G+P E+  +W  YP++F    C   + L ET   A++L++T  +VERY
Sbjct:    83 SLAVSDLLVLLLGMPLEVYEMWRNYPFLFGPVGCYFKTALFETVCFASILSVTTVSVERY 142

Query:   122 IAICHPF 128
             +A+ HPF
Sbjct:   143 VAVLHPF 149

GO:0005886 "plasma membrane" evidence=IEA

GO:0050482 "arachidonic acid secretion" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0048016 "inositol phosphate-mediated signaling" evidence=IEA

GO:0043006 "activation of phospholipase A2 activity by calcium-mediated signaling" evidence=IEA

GO:0042924 "neuromedin U binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007625 "grooming behavior" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005229 "intracellular calcium activated chloride channel activity" evidence=IEA

GO:0002023 "reduction of food intake in response to dietary excess" evidence=IEA

GO:0001607 "neuromedin U receptor activity" evidence=IEA

ZFIN|ZDB-GENE-081104-220 si:ch211-276k2.5 "si:ch211-276k2.5" [Danio rerio (taxid:7955)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 55/127 (43%), Positives = 85/127 (66%)

Query:     1 MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
             ++  +Y +   GP+  P+++  PV + Y++I + G  GN+ TC+VIA+NK M T TN+YL
Sbjct:     8 LDQDEYLEKYLGPRRSPVFL--PVCLTYLLIFLVGAVGNILTCIVIAKNKVMRTPTNFYL 65

Query:    61 FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
             FSLA+SDLL+L  G+P E+  +W  YP++  +  C   + L ET   A++L +TA +VER
Sbjct:    66 FSLAISDLLVLLLGMPLELYEMWSNYPFLLGKGGCYFKTLLFETVCFASILNVTALSVER 125

Query:   121 YIAICHP 127
             YIA+ HP
Sbjct:   126 YIAVIHP 132

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0001607 "neuromedin U receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

RGD|621155 Nmur2 "neuromedin U receptor 2" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/117 (48%), Positives = 78/117 (66%)

Query:    12 GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML 71
             GP+   L +  PV+V Y +I + G  GNL  C+VI R++ + T TNYYLFSLAVSDLL+L
Sbjct:    30 GPKRSDLSL--PVSVAYALIFLVGVMGNLLVCMVIVRHQTLKTPTNYYLFSLAVSDLLVL 87

Query:    72 FWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
               G+P EI  +WH YP++F    C   + L ET   A++L++T  +VERY+AI HPF
Sbjct:    88 LLGMPLEIYEMWHNYPFLFGPVGCYFKTALFETVCFASILSVTTVSVERYVAIVHPF 144

GO:0001607 "neuromedin U receptor activity" evidence=IEA;ISO

GO:0002023 "reduction of food intake in response to dietary excess" evidence=IEA;ISO

GO:0005229 "intracellular calcium activated chloride channel activity" evidence=IEA;ISO

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA;ISO

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA;ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA;ISO

GO:0007218 "neuropeptide signaling pathway" evidence=ISO

GO:0007268 "synaptic transmission" evidence=ISO

GO:0007417 "central nervous system development" evidence=IEA;ISO

GO:0007625 "grooming behavior" evidence=IEA;ISO

GO:0008188 "neuropeptide receptor activity" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0042924 "neuromedin U binding" evidence=IEA;ISO

GO:0043006 "activation of phospholipase A2 activity by calcium-mediated signaling" evidence=IEA;ISO

GO:0048016 "inositol phosphate-mediated signaling" evidence=IEA;ISO

GO:0048265 "response to pain" evidence=IEA;ISO

GO:0050482 "arachidonic acid secretion" evidence=IEA;ISO

WB|WBGene00019616 nmur-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 54/109 (49%), Positives = 74/109 (67%)

Query:    20 VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEI 79
             ++ P  +IY  I + G FGN+CTC+VIA NK MH  TNYYLFSLAVSD++ L  G+P E 
Sbjct:    30 IVIPTVIIYGTIFLLGLFGNICTCIVIAANKSMHNPTNYYLFSLAVSDIIALILGLPMEF 89

Query:    80 IY-IWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
                + + YPY F E IC   +FL E ++ A+++ I  F+ ER++AICHP
Sbjct:    90 YQSLDYSYPYRFSEGICKARAFLIEFTSYASIMIICCFSFERWLAICHP 138

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008188 "neuropeptide receptor activity" evidence=IDA;IPI

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	5e-13
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	5e-06
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	4e-05

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 44  VVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSE 103
           +VI R K + T TN +L +LAV+DLL L   +P   +Y      + F + +C +V FL  
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLL-TLPPWALYYLVGGDWPFGDALCKLVGFLFV 59

Query: 104 TSANATVLTITAFTVERYIAICHPF 128
            +  A++L +TA +++RY+AI HP 
Sbjct: 60  VNGYASILLLTAISIDRYLAIVHPL 84

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 22  FPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIY 81
             + V+Y  I   G  GN+    V+ + K + T  + YL +LAVSDLL  F       IY
Sbjct: 41  TILIVVYSTIFFFGLVGNIIVIYVLTKTK-IKTPMDIYLLNLAVSDLL--FVMTLPFQIY 97

Query: 82  IWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
            +  + + F E  C +VS L       ++  IT  +V+RYIAI HP
Sbjct: 98  YYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHP 143

Length = 335

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 24  VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW 83
           + + Y+II + G FGN    ++I   K + T T+ Y+F+LA+SDL+ +   I    I   
Sbjct: 101 IKIFYIIIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISDLIFV---IDFPFIIYN 156

Query: 84  HKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
               ++F + +C ++S        + +  IT  +++RY AI +P
Sbjct: 157 EFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYP 200

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG4219|consensus	423		99.92
PHA03234	338	DNA packaging protein UL33; Provisional	99.88
PHA02834	323	chemokine receptor-like protein; Provisional	99.85
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.81
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.81
KOG4220|consensus	503		99.79
PHA03235	409	DNA packaging protein UL33; Provisional	99.78
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.71
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	99.48
KOG2087|consensus	363		99.38
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.0
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	98.85
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	98.2
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	98.06
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	97.85
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.82
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	97.5
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	97.45
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	97.32
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	97.07
PF10316	273	7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep	97.07
PF00002	242	7tm_2: 7 transmembrane receptor (Secretin family);	96.21
PF02117	328	7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept	95.26
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	94.68
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	93.28
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	91.9
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	88.84
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	88.09
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	86.86
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	84.69
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	83.1
PF06681	226	DUF1182: Protein of unknown function (DUF1182); In	81.83

>KOG4219|consensus

Probab=99.92  E-value=1.2e-24  Score=155.20  Aligned_cols=114  Identities=29%  Similarity=0.508  Sum_probs=106.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchh
Q psy13007         14 QHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDET   93 (128)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (128)
                      ...+.+.+...+++|.++.++++.||.+|++++..+|++|+.+|+++.|||+||+.++++..+........+. |.+|..
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~-W~~G~f  106 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQE-WYFGSF  106 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cccccc
Confidence            3446677888899999999999999999999999999999999999999999999999999998877777765 999999


Q ss_pred             hHHhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         94 ICIMVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        94 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      .|++..++...+..+|+++++++|+|||+||.||+
T Consensus       107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl  141 (423)
T KOG4219|consen  107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPL  141 (423)
T ss_pred             eeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999996

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.88  E-value=2.2e-22  Score=144.61  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeE--ecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVI--ARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM   97 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i--~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   97 (128)
                      .+.....+|.++.++|++||.++++++  .+++++|+++|+++.|||++|++.++ ..|......  ...|.+|+..|++
T Consensus        31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~--~~~w~fG~~lCk~  107 (338)
T PHA03234         31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR--EALFNFNQAFCQC  107 (338)
T ss_pred             HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH--hCCccCchhHHHH
Confidence            556777899999999999999999954  45566789999999999999999987 556555433  2359999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         98 VSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        98 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..++.....++|++++++||+|||+||+||.
T Consensus       108 ~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~  138 (338)
T PHA03234        108 VLFIYHASCSYSICMLAIIATIRYKTLHRRK  138 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHeeeechh
Confidence            9999999999999999999999999999984

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.85  E-value=8e-21  Score=135.79  Aligned_cols=107  Identities=24%  Similarity=0.449  Sum_probs=91.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh
Q psy13007         18 LYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM   97 (128)
Q Consensus        18 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   97 (128)
                      ........+++.++.++|++||++++.++.++|++ ++.|+++.|||++|++. ....|..+....  .+|.+|+..|++
T Consensus        25 ~~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~~--~~w~~g~~~C~~  100 (323)
T PHA02834         25 SDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHNDL--NEWIFGEFMCKL  100 (323)
T ss_pred             cchhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHHc--CCcCCcchHHHh
Confidence            34456677899999999999999999988776554 57899999999999986 457887665443  249999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         98 VSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        98 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..+....+..+|+++++++|+|||.+|++|+
T Consensus       101 ~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~  131 (323)
T PHA02834        101 VLGVYFVGFFSNMFFVTLISIDRYILVVNAT  131 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhheeCch
Confidence            9999888889999999999999999999995

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.81  E-value=2.1e-19  Score=132.36  Aligned_cols=105  Identities=28%  Similarity=0.542  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhh
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVS   99 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~   99 (128)
                      ......+++.+++++|++||+++++++.+ |++|+++++++.|||++|++... ..|..+....  .+|.+|+..|++..
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~~--~~W~fg~~~Ck~~~  172 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIYNEF--DQWIFGDFMCKVIS  172 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHHh--ccccccccchhhHH
Confidence            44566678999999999999999977654 77889999999999999998765 7887766543  35999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        100 FLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       100 ~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +....+.+++++.++++++|||+||+||+
T Consensus       173 ~l~~~~~~~Si~~L~~isiDRYlaIv~p~  201 (417)
T PHA02638        173 ASYYIGFFSNMFLITLMSIDRYFAILYPI  201 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999995

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.81  E-value=1.1e-18  Score=124.96  Aligned_cols=107  Identities=34%  Similarity=0.536  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhh
Q psy13007         19 YVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV   98 (128)
Q Consensus        19 ~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~   98 (128)
                      ..+.....++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|....... ..+|..++..|+..
T Consensus        38 ~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~-~~~~~~~~~~C~~~  114 (335)
T PHA03087         38 TNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYI-LFQWSFGEFACKIV  114 (335)
T ss_pred             chhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHh-CCCCCCCcHHHHHH
Confidence            3556777889999999999999999999888 8899999999999999998776 4665553333 34588899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      .+....+...|+++++++++|||++|++|+
T Consensus       115 ~~~~~~~~~~S~~~l~~iaidRy~aI~~p~  144 (335)
T PHA03087        115 SGLYYIGFYNSMNFITVMSVDRYIAIVHPV  144 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999995

>KOG4220|consensus

Probab=99.79  E-value=3.1e-20  Score=133.18  Aligned_cols=108  Identities=23%  Similarity=0.452  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhh
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVS   99 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~   99 (128)
                      ...+++++-..++++.+.||++|++.+.-+|++++..|+|+.+||+||++.|.+.+|.+..+...+. |..|...|.++.
T Consensus        29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~-W~LG~~~CdlWL  107 (503)
T KOG4220|consen   29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGY-WPLGPLVCDLWL  107 (503)
T ss_pred             EEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcc-cccchHHHHHHH
Confidence            3445566778889999999999999999999999999999999999999999999999999998876 999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        100 FLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       100 ~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      .+.+....+|++++..|++|||..|++||
T Consensus       108 alDYvaSNASVmNLLiISFDRYFsVTrPL  136 (503)
T KOG4220|consen  108 ALDYVASNASVMNLLIISFDRYFSVTRPL  136 (503)
T ss_pred             HHHHHhhhhhhhhhheeeeecceeecccc
Confidence            99999999999999999999999999997

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.78  E-value=1.1e-18  Score=128.21  Aligned_cols=106  Identities=20%  Similarity=0.220  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeEe-cCCC-CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVIA-RNKH-MHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM   97 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i~-~~~~-~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   97 (128)
                      .+....+++.++.++|++||+++++++. ++|+ .++..++++.|||++|++.. ...|..+..  ....|..++..|++
T Consensus        31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~--~~~~~~~g~~~Ck~  107 (409)
T PHA03235         31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS--NQGLLSGSVAGCKF  107 (409)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh--cCccccCCCCeehh
Confidence            4567788899999999999999998754 3333 23566789999999999874 477866543  12223345789999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         98 VSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        98 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..+....+..+|++++++||+|||.+|++|+
T Consensus       108 ~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~  138 (409)
T PHA03235        108 ASLLYYASCTVGFATVALIAADRYRVIHQRT  138 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHeechh
Confidence            9999999999999999999999999999984

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.71  E-value=1.3e-17  Score=113.50  Aligned_cols=90  Identities=34%  Similarity=0.660  Sum_probs=81.9

Q ss_pred             hhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhHHHHHHHHHHHHHHHHHH
Q psy13007         38 GNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFT  117 (128)
Q Consensus        38 ~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia  117 (128)
                      ||.+++.++.++|++|++.++++.|||++|++.++...|........ ++|..++..|++..++..++...+.+++++++
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is   79 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF-DDWIFSSFLCRIFGFLFYFSSFSSIFSLVAIS   79 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-SSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999888877776665 44888999999999999999999999999999


Q ss_pred             HHhHhhhhcCC
Q psy13007        118 VERYIAICHPF  128 (128)
Q Consensus       118 idRy~ai~~Pl  128 (128)
                      +|||++|++|+
T Consensus        80 ~dRy~~i~~p~   90 (257)
T PF00001_consen   80 IDRYLAICHPL   90 (257)
T ss_dssp             HHHHHHHHSHH
T ss_pred             ccccccccccc
Confidence            99999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.48  E-value=2e-14  Score=100.05  Aligned_cols=93  Identities=25%  Similarity=0.445  Sum_probs=82.0

Q ss_pred             HHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhHHHHHHHHHHHHH
Q psy13007         33 VTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLT  112 (128)
Q Consensus        33 ~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~  112 (128)
                      ++|++||..++.++.++|++|+|+++++..+|++|++.+....|....... +.  ...+..|-...+...++.......
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~-~~--~i~~~~Cf~~~~~~~f~~~~qs~~   78 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR-DH--QITRSECFWQIFFYIFFQCAQSVI   78 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh-he--eccHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999988887774442 22  246788999999999999999999


Q ss_pred             HHHHHHHhHhhhhcCC
Q psy13007        113 ITAFTVERYIAICHPF  128 (128)
Q Consensus       113 l~~iaidRy~ai~~Pl  128 (128)
                      +.++++||++||+.|+
T Consensus        79 ~l~i~iDr~iaV~~P~   94 (257)
T PF10320_consen   79 MLAIAIDRLIAVCFPL   94 (257)
T ss_pred             HHHHHhhheeeEeehh
Confidence            9999999999999995

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=99.38  E-value=2.2e-12  Score=91.82  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-------hCccccchhhHHhh
Q psy13007         26 VIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWH-------KYPYMFDETICIMV   98 (128)
Q Consensus        26 ~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~-------~~~~~~~~~~C~~~   98 (128)
                      +.-.++..+.+.||.+|+......+...++...++.|||++|+++++........+...       ...|. ....|++.
T Consensus        29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~gC~~a  107 (363)
T KOG2087|consen   29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLGCPVA  107 (363)
T ss_pred             ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCCCchH
Confidence            44567788899999999999888888778999999999999999998655554444321       22355 67779999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +++..++...|++.++.+++||++.|++|+
T Consensus       108 GflavFASElSv~~LT~itlEr~l~i~~p~  137 (363)
T KOG2087|consen  108 GFLAVFASELSVFLLTLITLERWLSITYPF  137 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhheeccc
Confidence            999999999999999999999999999986

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.00  E-value=1.8e-09  Score=77.04  Aligned_cols=98  Identities=19%  Similarity=0.281  Sum_probs=75.6

Q ss_pred             HHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh--Ccc------ccchhhHHhhhHHH
Q psy13007         31 ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHK--YPY------MFDETICIMVSFLS  102 (128)
Q Consensus        31 ~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~--~~~------~~~~~~C~~~~~~~  102 (128)
                      ++++|+++|.+.+.++.|++.+.++.|.++..+|++|+...+...+.........  .+.      ........+...+.
T Consensus         6 ~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~   85 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLS   85 (318)
T ss_pred             EeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHH
Confidence            4678999999999999986555569999999999999999998888777554432  111      11112223455677


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        103 ETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       103 ~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..+...|.|..+++|+.|++++.+|+
T Consensus        86 ~~~~~~S~WL~V~mA~iR~l~i~~p~  111 (318)
T PF10324_consen   86 DIFRRISIWLGVLMALIRYLSIKFPM  111 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            88899999999999999999999885

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.85  E-value=6.6e-09  Score=72.90  Aligned_cols=97  Identities=14%  Similarity=0.212  Sum_probs=77.3

Q ss_pred             HHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHH-hhhHHHHHHHHHH
Q psy13007         31 ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICI-MVSFLSETSANAT  109 (128)
Q Consensus        31 ~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~~s  109 (128)
                      ++++|++.|.+++..+.|.+++|++.+.+-.+.+++|.+.+.............+.+. ..+.... ..+.....+...+
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~-~~~~~~s~~~g~~~~~~y~~~   81 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISF-LPSSLNSIIFGFIGMFCYFIG   81 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-CchHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999999886555444444444432 2332333 4477777888899


Q ss_pred             HHHHHHHHHHhHhhhhcCC
Q psy13007        110 VLTITAFTVERYIAICHPF  128 (128)
Q Consensus       110 ~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..+..+||++|+.||..|.
T Consensus        82 ~~~~~liaiNRf~ai~fP~  100 (274)
T PF10328_consen   82 PLSHLLIAINRFCAIFFPF  100 (274)
T ss_pred             HHHHHHHHHHHHheeeeHH
Confidence            9999999999999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.20  E-value=1.3e-05  Score=54.06  Aligned_cols=77  Identities=14%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007         50 KHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus        50 ~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                      +++|.-.+-++.||.++|++.++..+..-......+. -..++..|..++++...+-..+-+...+||++-|+.+.+|
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~-i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~  106 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGG-IIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP  106 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-eeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3445666679999999999999865553444443322 3346889999999999999999999999999999999887

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=98.06  E-value=2.1e-05  Score=56.18  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhHHHH
Q psy13007         24 VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSE  103 (128)
Q Consensus        24 ~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~  103 (128)
                      ...+..+.++++++|-++++..+.+.|++|++.+-++.-++++|++........   ... .. -..++..|..++++..
T Consensus         9 ~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~---~~~-~~-~~~~s~lC~~Qafliq   83 (303)
T PF05462_consen    9 LYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIM---TLS-PS-AGENSFLCQFQAFLIQ   83 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---Hhc-cc-CCCCCcchhhHhHHHH
Confidence            334567778889999999999999999999999999999999999877643221   111 21 2236788999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhc
Q psy13007        104 TSANATVLTITAFTVERYIAICH  126 (128)
Q Consensus       104 ~~~~~s~~~l~~iaidRy~ai~~  126 (128)
                      ++..++.+-.++||++=|+.+.+
T Consensus        84 ~f~~as~lWt~~iA~nly~~~~~  106 (303)
T PF05462_consen   84 FFMLASFLWTLCIAFNLYLTFVK  106 (303)
T ss_pred             HhhHHHHHHHHHHHHHhhheeEE
Confidence            99999998889999999987765

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=97.85  E-value=0.00016  Score=51.91  Aligned_cols=103  Identities=15%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHH--
Q psy13007         19 YVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICI--   96 (128)
Q Consensus        19 ~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~--   96 (128)
                      ..+...++.+.+.+++-.+....++.++.+++..|.|.+-.+.-|++.|+..........-....      .|...|.  
T Consensus        30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i------~G~vfC~~P  103 (313)
T PF10321_consen   30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI------FGAVFCSYP  103 (313)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh------cCccccCCc
Confidence            44556667788888888888999998888888778899999999999999987543221111111      1333343  


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007         97 ----MVSFLSETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus        97 ----~~~~~~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                          +.+.....+...+......++++|...+..|
T Consensus       104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~  138 (313)
T PF10321_consen  104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFP  138 (313)
T ss_pred             hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence                4444555566777778889999999888765

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.82  E-value=0.00037  Score=49.87  Aligned_cols=103  Identities=18%  Similarity=0.262  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeEec---CCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHH
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVIAR---NKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICI   96 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i~~---~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~   96 (128)
                      .+....++.....++|+.||+.+..+-..   +++.-+|.+..+.+||+++++.-...........+... ....+..++
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~   83 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPN-IYFSENVYK   83 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch-hhhhhhHHH
Confidence            34455677888999999999998877543   33333599999999999999987765555555544443 233566788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13007         97 MVSFLSETSANATVLTITAFTVERYIA  123 (128)
Q Consensus        97 ~~~~~~~~~~~~s~~~l~~iaidRy~a  123 (128)
                      ...+.-.+....|.|..+.+++-=++-
T Consensus        84 ~~~~~~~f~~~~s~W~tt~LsvfYcvK  110 (303)
T PF05296_consen   84 IIDFLWMFSNSSSLWFTTWLSVFYCVK  110 (303)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhee
Confidence            888888888889999999888743333

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.50  E-value=0.0002  Score=50.67  Aligned_cols=77  Identities=13%  Similarity=0.299  Sum_probs=50.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH---hhCccccchhhHHhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         52 MHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW---HKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        52 ~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~---~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ++++.+-++.+-+++|++..+...........   .+.-...++..-+......+..........+.+|++||.||++|.
T Consensus        29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~  108 (283)
T PF10323_consen   29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPT  108 (283)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeec
Confidence            56899999999999999987764333222221   110001122223444455556667778888999999999999994

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.45  E-value=0.00034  Score=49.10  Aligned_cols=71  Identities=24%  Similarity=0.463  Sum_probs=56.1

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHH-hhHHHHHHHHhhCccccchhhHHhhhHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy13007         50 KHMHTATNYYLFSLAVSDLLMLFW-GIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAIC  125 (128)
Q Consensus        50 ~~~~~~~~~~l~~La~~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~  125 (128)
                      .++.+|.+..+.+|++++.+..+. ++|.. ...+... . +++..||...+....+.+.|+++.+.++.  |.||+
T Consensus         5 ~~r~kp~dlIl~hLa~aN~lvLl~rGip~~-~~~~~~~-~-~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAIt   76 (265)
T PF03402_consen    5 GHRLKPIDLILIHLALANILVLLSRGIPQT-MAFFGWK-F-FDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAIT   76 (265)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHhhHHHH-HHHhhcc-c-CCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEE
Confidence            344569999999999999998775 45543 3333333 2 58999999999999999999999999988  77765

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.32  E-value=0.0056  Score=44.19  Aligned_cols=102  Identities=13%  Similarity=0.086  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH---h-hC--ccccchhhHHhh
Q psy13007         25 TVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW---H-KY--PYMFDETICIMV   98 (128)
Q Consensus        25 ~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~---~-~~--~~~~~~~~C~~~   98 (128)
                      ..+..+++++|++.++..++...+++..|.-..+++....++.++.+..-.........   . .+  +...+...|-..
T Consensus        20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l   99 (324)
T PF10292_consen   20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL   99 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence            34577888889888888888888888888888899988899999887654333332222   1 11  123456678888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICH  126 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~  126 (128)
                      .....++......+..++.+||++|..+
T Consensus       100 R~~~~~~~~~~~~t~v~l~IER~iAT~~  127 (324)
T PF10292_consen  100 RIPYNFGLFLVSFTTVSLVIERTIATFF  127 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888899999999999999999999764

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.07  E-value=0.002  Score=45.75  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhhhhhheeeeEecCCCC-CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCc---------cccchhhHH
Q psy13007         27 IYVIILVTGCFGNLCTCVVIARNKHM-HTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYP---------YMFDETICI   96 (128)
Q Consensus        27 ~~~~~~~~gi~~N~~vl~~i~~~~~~-~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~---------~~~~~~~C~   96 (128)
                      .+.+.+.+|+..|.+.+..+.++... -++..+++.|-|+.|++.+........-....+.+         -..|+..|.
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~   83 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCF   83 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHH
Confidence            46778899999999999887765432 35788999999999999876432211111111100         014677788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007         97 MVSFLSETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus        97 ~~~~~~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                      ....+...+...+.+++..--..||..+.++
T Consensus        84 ~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~  114 (292)
T PF10317_consen   84 FCYHIMLHFSIHSGWSIILSFYYRYYILRNP  114 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7777777778888888888889999998875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.07  E-value=0.0026  Score=44.95  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhh----HH-hh
Q psy13007         24 VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETI----CI-MV   98 (128)
Q Consensus        24 ~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~----C~-~~   98 (128)
                      ...+-.+.+.+....|...+..+..+|+.+++...+.---...|.+.+....+..........  . .+..    .. ..
T Consensus         8 v~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~if~~   84 (273)
T PF10316_consen    8 VSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSL--F-PEFLDYKNLIFYI   84 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHh--C-hhhhccccEEeeh
Confidence            334556667888889999998877666655566666666788999999877666555444321  1 1111    11 11


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +................||+||-.|+..|.
T Consensus        85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI  114 (273)
T PF10316_consen   85 GWPSSNLGSIRSILALIIALDRVFAVYFPI  114 (273)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            222333446677788899999999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.

>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.21  E-value=0.0027  Score=43.57  Aligned_cols=98  Identities=12%  Similarity=-0.008  Sum_probs=3.3

Q ss_pred             HHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhHHHHHHH
Q psy13007         27 IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSA  106 (128)
Q Consensus        27 ~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~  106 (128)
                      +..+.+.+++.+-.+++......|++|+..+....||++++++..+..+......  .+......+..|...+.+.+++.
T Consensus         6 i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~--~~~~~~~~~~~C~~~a~~~hy~~   83 (242)
T PF00002_consen    6 ISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQT--FSPISTTNHCLCRAIAILLHYFF   83 (242)
T ss_dssp             HHHHHHH-------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhc--cccccccccccchhhhhHhHHHH
Confidence            3444455556665666666666678888778888999999998776432221111  11100012335999999999888


Q ss_pred             HHHHHHHHHHHHHhHhhhhc
Q psy13007        107 NATVLTITAFTVERYIAICH  126 (128)
Q Consensus       107 ~~s~~~l~~iaidRy~ai~~  126 (128)
                      .++..-+.+.++|-|..+.+
T Consensus        84 la~f~Wm~~~~~~l~~~~~~  103 (242)
T PF00002_consen   84 LASFFWMLVEAFYLYRLLVK  103 (242)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHhheeEEE
Confidence            88888888999988877754

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.

>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.26  E-value=0.15  Score=37.01  Aligned_cols=105  Identities=10%  Similarity=0.185  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHH-HHHHHHHHHHHHHH--hhHHHHH-HHHh-hC--ccccchhhH
Q psy13007         23 PVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYY-LFSLAVSDLLMLFW--GIPSEII-YIWH-KY--PYMFDETIC   95 (128)
Q Consensus        23 ~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~-l~~La~~dl~~~~~--~~~~~~~-~~~~-~~--~~~~~~~~C   95 (128)
                      .-.++..++.+++..+....+-.+.++.-.++.+..+ ..+|..+++=-...  .....+. .+.. ++  +..+.+..|
T Consensus        22 ~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC  101 (328)
T PF02117_consen   22 INQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSEC  101 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCce
Confidence            3334566667777777777777777777777655554 45555554322111  1112222 2221 22  134567778


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007         96 IMVSFLSETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus        96 ~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                      ........++....++.-.++.+||-+|-..|
T Consensus       102 ~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~  133 (328)
T PF02117_consen  102 FPYYYFYYFTNSGMIFIQFALTIDRLLATFFP  133 (328)
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            88887777887888889999999999987655

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.68  E-value=0.16  Score=35.46  Aligned_cols=96  Identities=11%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             HHHHhhhhhheeeeEecCCC--C-CchHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhhC-----cc-ccchhhHHhhhHH
Q psy13007         32 LVTGCFGNLCTCVVIARNKH--M-HTATNYYLFSLAVSDLLMLFWGIPS-EIIYIWHKY-----PY-MFDETICIMVSFL  101 (128)
Q Consensus        32 ~~~gi~~N~~vl~~i~~~~~--~-~~~~~~~l~~La~~dl~~~~~~~~~-~~~~~~~~~-----~~-~~~~~~C~~~~~~  101 (128)
                      ++.+++.+..++.++.++|+  . +++.+.+...=++.|++.-+...+. .+.....+.     ++ .......+...++
T Consensus         8 gi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l   87 (275)
T PF02118_consen    8 GIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFL   87 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHH
Confidence            45566667777777776666  3 5666666666666666665433222 111110000     00 1123445666667


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007        102 SETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus       102 ~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                      ......+--.+...++++|+-++.+|
T Consensus        88 ~~~~~~~Q~~~~~~is~nR~t~v~~p  113 (275)
T PF02118_consen   88 QYYFAYVQYLSTILISLNRFTSVLFP  113 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            77778888889999999999999887

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.28  E-value=0.034  Score=39.61  Aligned_cols=99  Identities=14%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             HHHHHHHhhhhhheeeeEecCC-CCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------h-hCccccchhhHHhh
Q psy13007         29 VIILVTGCFGNLCTCVVIARNK-HMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW--------H-KYPYMFDETICIMV   98 (128)
Q Consensus        29 ~~~~~~gi~~N~~vl~~i~~~~-~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~--------~-~~~~~~~~~~C~~~   98 (128)
                      .+..+++++.|.+.+..+.++. +.-..-.+++...|+.|+..+..-....-....        . .+++..++...+..
T Consensus         6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (307)
T PF10326_consen    6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence            3556788999999998876543 333356677778888899887743221111111        1 11122233344445


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                      ......+.+.+...+..==+.||.++++|
T Consensus        86 ~~~y~~~f~~~~~llaihFiYRY~av~~~  114 (307)
T PF10326_consen   86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRP  114 (307)
T ss_pred             hhhhhhhHHHHHHHHHhHhhhheeeeccc
Confidence            55555566667777777778999999987

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=91.90  E-value=2.3  Score=31.68  Aligned_cols=97  Identities=21%  Similarity=0.226  Sum_probs=61.0

Q ss_pred             HHHHHHHhhhhhheeeeEecCCC----CCc--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCcc----------ccch
Q psy13007         29 VIILVTGCFGNLCTCVVIARNKH----MHT--ATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPY----------MFDE   92 (128)
Q Consensus        29 ~~~~~~gi~~N~~vl~~i~~~~~----~~~--~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~----------~~~~   92 (128)
                      ...+.+|+.|-++-+.--.|...    .++  +..-.+..+++||++.++..+.....+....+..          .+..
T Consensus        34 LgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~  113 (405)
T PF02101_consen   34 LGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPA  113 (405)
T ss_pred             HHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccH
Confidence            34455666665555442222100    111  2346788999999999986666655554432211          1234


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy13007         93 TICIMVSFLSETSANATVLTITAFTVERYIAIC  125 (128)
Q Consensus        93 ~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~  125 (128)
                      ..|........++..++-+-..+-|+|-|+.+.
T Consensus       114 afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~  146 (405)
T PF02101_consen  114 AFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIR  146 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence            678887777777888888889999999998764

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=88.84  E-value=1.8  Score=30.84  Aligned_cols=98  Identities=14%  Similarity=0.310  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhheeee-EecCCCCC-chHHHHHHHHHHHHHHHHHH----hhHHHHHHHHhhCccccchhhH
Q psy13007         22 FPVTVIYVIILVTGCFGNLCTCVV-IARNKHMH-TATNYYLFSLAVSDLLMLFW----GIPSEIIYIWHKYPYMFDETIC   95 (128)
Q Consensus        22 ~~~~~~~~~~~~~gi~~N~~vl~~-i~~~~~~~-~~~~~~l~~La~~dl~~~~~----~~~~~~~~~~~~~~~~~~~~~C   95 (128)
                      +.....+.+..+.+.+.++..++. +...++.| -+..+|+..|.++-++....    ..|..+.....++ .. .+..-
T Consensus        13 y~vi~~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~-~~-~s~~f   90 (305)
T PF04789_consen   13 YFVISLFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKE-FV-QSELF   90 (305)
T ss_pred             EehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHH-Hh-ccchh
Confidence            333344444445555544443322 22233443 47899999999998887654    3666664444333 22 34445


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhH
Q psy13007         96 IMVSFLSETSANATVLTITAFTVERY  121 (128)
Q Consensus        96 ~~~~~~~~~~~~~s~~~l~~iaidRy  121 (128)
                      .+..+...++.++-.++=..+|++|.
T Consensus        91 ~~~Sy~idf~h~siLfsNlviaIqR~  116 (305)
T PF04789_consen   91 IFMSYLIDFCHYSILFSNLVIAIQRF  116 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67777888888888888899999995

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=88.09  E-value=5.1  Score=28.78  Aligned_cols=102  Identities=16%  Similarity=0.077  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhhhhhheeeeEec-CCCCCchHHHHH---HHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh-
Q psy13007         23 PVTVIYVIILVTGCFGNLCTCVVIAR-NKHMHTATNYYL---FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM-   97 (128)
Q Consensus        23 ~~~~~~~~~~~~gi~~N~~vl~~i~~-~~~~~~~~~~~l---~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-   97 (128)
                      ++...+-++|.++++.|.+.+..+.. .++..+-.++++   ....++|+-.+....|.-+.-......  .| ..|+. 
T Consensus        10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~--~G-~l~~~f   86 (303)
T PF10327_consen   10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYC--VG-FLARYF   86 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEE--Ee-ehhhcC
Confidence            44466888999999999999977664 455555344333   234568888887666666555443321  11 22222 


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007         98 ------VSFLSETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus        98 ------~~~~~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                            ......+....-+-.+...-+-|+.+|.+.
T Consensus        87 ~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i  122 (303)
T PF10327_consen   87 GISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARI  122 (303)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  222233333444444555556788887653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=86.86  E-value=1.4  Score=30.58  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             chhhHHhhhHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy13007         91 DETICIMVSFLSETSANATVLTITAFTVERYIAICH  126 (128)
Q Consensus        91 ~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~  126 (128)
                      .+..+|.......+..+.+......+++||+.|..+
T Consensus        81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~  116 (236)
T PF02175_consen   81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKM  116 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456678888888899999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=84.69  E-value=13  Score=27.03  Aligned_cols=100  Identities=14%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhhhhhheeeeEecCCCCC-chHHHHHHHHHHHHHHHHHHh--hHHHHHHHH-------hhCccccchhh-H
Q psy13007         27 IYVIILVTGCFGNLCTCVVIARNKHMH-TATNYYLFSLAVSDLLMLFWG--IPSEIIYIW-------HKYPYMFDETI-C   95 (128)
Q Consensus        27 ~~~~~~~~gi~~N~~vl~~i~~~~~~~-~~~~~~l~~La~~dl~~~~~~--~~~~~~~~~-------~~~~~~~~~~~-C   95 (128)
                      +--+.++++.+.|.+-+..+..+|+.+ ..-.+++..-|+-|++.+..-  .|.-+....       .++ |...... =
T Consensus        10 ~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG-~F~~~s~l~   88 (310)
T PF10319_consen   10 IPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDG-PFFEKSELG   88 (310)
T ss_pred             HHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCC-cCcCcchHH
Confidence            344567888899999999888877765 367788888999999887742  332222211       111 2111111 1


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q psy13007         96 IMVSFLSETSANATVLTITAFTVERYIAICHP  127 (128)
Q Consensus        96 ~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~P  127 (128)
                      .............|=..|..==+.||+++.+|
T Consensus        89 ~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~  120 (310)
T PF10319_consen   89 QHLLSIRCSFISGSYAILHIHFVYRYLVLFNS  120 (310)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCc
Confidence            11122222222333334445557999999987

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=83.10  E-value=8.7  Score=27.21  Aligned_cols=102  Identities=17%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhhhhhheeeeEecC-CCCCchHHHHHHHHH----HHHHHHHHHhhHHHHHHHHhhCcc---ccchhhHH
Q psy13007         25 TVIYVIILVTGCFGNLCTCVVIARN-KHMHTATNYYLFSLA----VSDLLMLFWGIPSEIIYIWHKYPY---MFDETICI   96 (128)
Q Consensus        25 ~~~~~~~~~~gi~~N~~vl~~i~~~-~~~~~~~~~~l~~La----~~dl~~~~~~~~~~~~~~~~~~~~---~~~~~~C~   96 (128)
                      ....-.+.++++.-|.+..+.+.++ ++..+...+.+.++-    +.|+..+....|....-......-   ..-+.-..
T Consensus         7 ~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~   86 (302)
T PF10318_consen    7 SIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTP   86 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChH
Confidence            3455667777888888888766554 444445566666654    457777776666433322221110   01122345


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q psy13007         97 MVSFLSETSANATVLTITAFTVERYIAICH  126 (128)
Q Consensus        97 ~~~~~~~~~~~~s~~~l~~iaidRy~ai~~  126 (128)
                      .+.+...........+...+--+||.++..
T Consensus        87 ~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~  116 (302)
T PF10318_consen   87 IQFYIGVTLLAFVGVSILSLFENRYQIIIR  116 (302)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence            555556566666677777788899988763

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans

Probab=81.83  E-value=0.75  Score=31.30  Aligned_cols=94  Identities=13%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhhhhhheeeeEecCCCCC---chHHHHHHHHHHHHHHHHHHhhHHHHHHHHh------hCccccchhhHH
Q psy13007         26 VIYVIILVTGCFGNLCTCVVIARNKHMH---TATNYYLFSLAVSDLLMLFWGIPSEIIYIWH------KYPYMFDETICI   96 (128)
Q Consensus        26 ~~~~~~~~~gi~~N~~vl~~i~~~~~~~---~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~------~~~~~~~~~~C~   96 (128)
                      ..-.+....+.+.+.+....+.++|++.   +++      ..++-+..-+...|..+.+.+.      +.+....-..|.
T Consensus        45 ~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksT------IvFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCS  118 (226)
T PF06681_consen   45 TVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKST------IVFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCS  118 (226)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCe------EEEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeeh
Confidence            3444444555555555555455544421   111      1223333333455655554331      111223566788


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy13007         97 MVSFLSETSANATVLTITAFTVERYIAIC  125 (128)
Q Consensus        97 ~~~~~~~~~~~~s~~~l~~iaidRy~ai~  125 (128)
                      +..-.........-...+++|++||.-|.
T Consensus       119 flk~f~S~t~s~~~vip~aVAIyRy~~VV  147 (226)
T PF06681_consen  119 FLKNFTSSTTSCAQVIPVAVAIYRYLIVV  147 (226)
T ss_pred             HHHhHHHHHhhhhccchhhhhhhhhheee
Confidence            88766555555556666789999998765

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		1e-12
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		8e-12
4grv_A	510	The Crystal Structure Of The Neurotensin Receptor N		3e-11
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		3e-10
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		3e-10
2x72_A	349	Crystal Structure Of The Constitutively Active E113		1e-08
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		1e-08
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		1e-08
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		1e-08
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		1e-08
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		1e-08
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-08
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		1e-07
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		1e-07
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		1e-07
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		1e-07
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		1e-07
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		3e-07
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		8e-07
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		2e-06
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		3e-06
3oe0_A	499	Crystal Structure Of The Cxcr4 Chemokine Receptor I		3e-05
3odu_A	502	The 2.5 A Structure Of The Cxcr4 Chemokine Receptor		3e-05
3oe6_A	508	Crystal Structure Of The Cxcr4 Chemokine Receptor I		3e-05
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		6e-05
3pwh_A	329	Thermostabilised Adenosine A2a Receptor Length = 32		2e-04
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		5e-04
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		6e-04
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-04
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-04
4eiy_A	447	Crystal Structure Of The Chimeric Protein Of A2aar-		7e-04

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 7   EDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVS 66
           ED    P H    +   +T +Y ++ V G  GN     VI R   M TATN Y+F+LA++
Sbjct: 8   EDAQLEPAHISPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALA 67
Query: 67  DLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
           D L+         +Y+ + +P  F + +C +V  +   +   ++ T+T  +V+RYIA+CH
Sbjct: 68  DALVTTTMPFQSTVYLMNSWP--FGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 125
Query: 127 P 127
           P
Sbjct: 126 P 126

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 17  PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
           PL +   +  +Y+ + V G  GN     VI R+  M TATN Y+F+LA++D L+L   +P
Sbjct: 121 PLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL-TLP 179
Query: 77  SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
            +   I   + + F   +C  V  +   +   +  T+TA +V+RY+AICHP
Sbjct: 180 FQGTDILLGF-WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP 229

>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 9/134 (6%)
Query: 4   SQYEDLAWGPQHD-----PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHT---A 55
           S  E    GP  D      +Y    VT IY+ + V G  GN  T   +AR K + +    
Sbjct: 10  STSESDTAGPNSDLDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQST 69
Query: 56  TNYYLFSLAVSDLLMLFWGIPSEII-YIWHKYPYMFDETICIMVSFLSETSANATVLTIT 114
            +Y+L SLA+SDLL+L   +P E+  +IW  +P+ F +  C    FL +    AT L + 
Sbjct: 70  VHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVA 129
Query: 115 AFTVERYIAICHPF 128
           + +V RY+AICHPF
Sbjct: 130 SLSVARYLAICHPF 143

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 13  PQHDPLYVIFPVTV--IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
           PQ     ++  +T+  +Y I+ V G FGN     VI R   M TATN Y+F+LA++D L 
Sbjct: 7   PQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA 66
Query: 71  LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
                   + Y+   +P  F   +C +V  +   +   ++ T+   +V+RYIA+CHP
Sbjct: 67  TSTLPFQSVNYLMGTWP--FGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHP 121

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 18  LYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPS 77
           L +   +T +Y  +   G  GN+     I R   + TATN Y+F+LA++D L        
Sbjct: 11  LALAIAITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQ 70
Query: 78  EIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
              Y+   +P  F E +C  V  +   +   ++ T+T  +V+RYIA+CHP
Sbjct: 71  SAKYLMETWP--FGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHP 118

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39  NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
           N  T  V  ++K + T  NY L +LAV+DL M+F G  + +    H Y ++F  T C + 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLQ 114
Query: 99  SFLSETSANATVLTITAFTVERYIAICHP 127
            F +       + ++    +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39  NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
           N  T  V  ++K + T  NY L +LAV+DL M+F G  + +    H Y ++F  T C + 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 114
Query: 99  SFLSETSANATVLTITAFTVERYIAICHP 127
            F +       + ++    +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39  NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
           N  T  V  ++K + T  NY L +LAV+DL M+F G  + +    H Y ++F  T C + 
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 113
Query: 99  SFLSETSANATVLTITAFTVERYIAICHP 127
            F +       + ++    +ERY+ +C P
Sbjct: 114 GFFATLGGEIALWSLVVLAIERYVVVCKP 142

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39  NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
           N  T  V  ++K + T  NY L +LAV+DL M+F G  + +    H Y ++F  T C + 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 114
Query: 99  SFLSETSANATVLTITAFTVERYIAICHP 127
            F +       + ++    +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39  NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
           N  T  V  ++K + T  NY L +LAV+DL M+F G  + +    H Y ++F  T C + 
Sbjct: 56  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 114
Query: 99  SFLSETSANATVLTITAFTVERYIAICHP 127
            F +       + ++    +ERY+ +C P
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKP 143

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 39  NLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV 98
           N  T  V  ++K + T  NY L +LAV+DL M+F G  + +    H Y ++F  T C + 
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE 113
Query: 99  SFLSETSANATVLTITAFTVERYIAICHP 127
            F +       + ++    +ERY+ +C P
Sbjct: 114 GFFATLGGEIALWSLVVLAIERYVVVCKP 142

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 16  DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGI 75
           D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ SLA +DL+M    +
Sbjct: 178 DEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV 236
Query: 76  PSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           P    +I  K  + F    C   + +      A++ T+    V+RY AI  PF
Sbjct: 237 PFGAAHILTK-TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 288

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           N S   D     Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ 
Sbjct: 15  NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 73
Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLA +DL+M    +P    +I  K  + F    C   + +      A++ T+    V+RY
Sbjct: 74  SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 132
Query: 122 IAICHPF 128
            AI  PF
Sbjct: 133 FAITSPF 139

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           N S   D     Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ 
Sbjct: 16  NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 74
Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLA +DL+M    +P    +I  K  + F    C   + +      A++ T+    V+RY
Sbjct: 75  SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 133
Query: 122 IAICHPF 128
            AI  PF
Sbjct: 134 FAITSPF 140

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           N S   D     Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ 
Sbjct: 23  NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 81
Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLA +DL+M    +P    +I  K  + F    C   + +      A++ T+    V+RY
Sbjct: 82  SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRY 140
Query: 122 IAICHPF 128
            AI  PF
Sbjct: 141 FAITSPF 147

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           N S   D     Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ 
Sbjct: 22  NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 80
Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLA +DL+M    +P    +I  K  + F    C   + +      A++ T+    V+RY
Sbjct: 81  SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 139
Query: 122 IAICHPF 128
            AI  PF
Sbjct: 140 FAITSPF 146

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           N S   D     Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ 
Sbjct: 23  NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 81
Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLA +DL+M    +P    +I  K  + F    C   + +      A++ T+    V+RY
Sbjct: 82  SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 140
Query: 122 IAICHPF 128
            AI  PF
Sbjct: 141 FAITSPF 147

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 13  PQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLF 72
            Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ SLA +DL+M  
Sbjct: 3   QQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 61
Query: 73  WGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
             +P    +I  K  + F    C   + +      A++ T+    V+RY AI  PF
Sbjct: 62  AVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 116

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 13  PQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLF 72
            Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ SLA +DL+M  
Sbjct: 2   QQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 60
Query: 73  WGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
             +P     I  K  + F    C   + +      A++ T+    V+RY AI  PF
Sbjct: 61  AVVPFGAACILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 115

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 16  DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGI 75
           D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ SLA +DL+M    +
Sbjct: 1   DEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVV 59
Query: 76  PSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           P    +I  K  + F    C   + +      A++ T+    V+RY AI  PF
Sbjct: 60  PFGAAHILTK-TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF 111

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 9   LAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDL 68
           LA    +    V+F V V   + LVT   GN+   V I  N+H+ T  NY+LFSLA +DL
Sbjct: 12  LALTSPYKTFEVVFIVLVAGSLSLVT-IIGNILVMVSIKVNRHLQTVNNYFLFSLACADL 70
Query: 69  LMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           ++  + +    +Y    Y +     +C +   L    +NA+V+ +   + +RY  +  P 
Sbjct: 71  IIGVFSMNLYTLYTVIGY-WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPL 129

>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 27  IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML----FWGIPSEIIYI 82
           IY II +TG  GN    +V+   K + + T+ Y   L+V+DLL +    FW +  + +  
Sbjct: 54  IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVAN 111
Query: 83  WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
           W+     F   +C  V  +   +  ++V  +   +++RY+AI H
Sbjct: 112 WY-----FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150

>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 27  IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML----FWGIPSEIIYI 82
           IY II +TG  GN    +V+   K + + T+ Y   L+V+DLL +    FW +  + +  
Sbjct: 54  IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVAN 111
Query: 83  WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
           W+     F   +C  V  +   +  ++V  +   +++RY+AI H
Sbjct: 112 WY-----FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150

>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 27  IYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML----FWGIPSEIIYI 82
           IY II +TG  GN    +V+   K + + T+ Y   L+V+DLL +    FW +  + +  
Sbjct: 54  IYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--DAVAN 111
Query: 83  WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICH 126
           W+     F   +C  V  +   +  ++V  +   +++RY+AI H
Sbjct: 112 WY-----FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 28  YVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYP 87
           Y  +++   FGN   C+ + + + + T TNY + SLAV+DLL+    +P  +        
Sbjct: 45  YCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGV 104
Query: 88  YMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
           + F    C +   L      A++  + A +++RY A+  P
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMP 144

>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 31  ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMF 90
           I V    GN+  C  +  N ++   TNY++ SLA +D+L+    IP  I        +  
Sbjct: 16  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITI---STGFCA 72
Query: 91  DETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
               C+ ++      A +++ ++ A  ++RYIAI  P 
Sbjct: 73  ACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPL 110

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 12  GPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLML 71
            PQ  PL     V V+  I LVT    NL     +   + +HT  N Y+ SL+V+DL++ 
Sbjct: 5   SPQLMPL-----VVVLSTICLVTVGL-NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVG 58
Query: 72  FWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
              +P  I+Y+     +     +C+    +   ++ A++ ++    ++RY ++  P 
Sbjct: 59  AVVMPMNILYLLMS-KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPL 114

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 15  HDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWG 74
           H    V+F   +   + LVT   GN+   V    NK + T  NY+L SLA +DL++   G
Sbjct: 7   HTIWQVVFIAFLTGFLALVT-IIGNILVIVAFKVNKQLKTVNNYFLLSLACADLII---G 62
Query: 75  IPSEIIYIWH--KYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           + S  ++  +     +      C +   +   ++NA+V+ +   + +RY +I  P 
Sbjct: 63  VISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPL 118

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 29  VIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPY 88
           V++L+    GN+     I   + + T TN ++ SLA +DL++    +P     +  +  +
Sbjct: 21  VVLLIVA--GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV-VRGTW 77
Query: 89  MFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           ++   +C + + L      A++ T+    ++RY+AI  PF
Sbjct: 78  LWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF 117

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 29  VIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPY 88
           V++L+    GN+     I   + + T TN ++ SLA +DL++    +P     +  +  +
Sbjct: 21  VVLLIVA--GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV-VRGTW 77
Query: 89  MFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           ++   +C + + L      A++ T+    ++RY+AI  PF
Sbjct: 78  LWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF 117

>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 31  ILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMF 90
           I V    GN+  C  +  N ++   TNY++ SLA +D+ +    IP  I        +  
Sbjct: 41  IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI---STGFCA 97
Query: 91  DETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
               C+ ++        +++ ++ A  ++RYIAI  P 
Sbjct: 98  ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	1e-31
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	2e-24
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	6e-23
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-20
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	8e-20
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-18
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-17
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	4e-17
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	5e-17
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	5e-17
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	5e-17
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	2e-16
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	6e-16
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	5e-15
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-14

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score =  113 bits (286), Expect = 1e-31
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 11  WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
                 P + I      Y +I+VT   GN+    +I  +K M T TNY+L +LA ++  M
Sbjct: 22  PNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASM 81

Query: 71  LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
             +       Y  H   + +    C   +F    +  A++ ++TA   +RY+AI HP 
Sbjct: 82  AAFNTVVNFTYAVHNE-WYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPL 138

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 90.5 bits (225), Expect = 6e-23
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 1   MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
           +  S +E   +       + +  +     ++++ G   N  T  V  ++K + T  NY L
Sbjct: 20  VVRSPFEAPQYYLAEPWQFSM--LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYIL 77

Query: 61  FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
            +LAV+DL M+F G  + +    H Y   F  T C +  F +       + ++    +ER
Sbjct: 78  LNLAVADLFMVFGGFTTTLYTSLHGYFV-FGPTGCNLEGFFATLGGEIALWSLVVLAIER 136

Query: 121 YIAICHPF 128
           Y+ +C P 
Sbjct: 137 YVVVCKPM 144

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 82.7 bits (204), Expect = 7e-20
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 24  VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLL-MLFWGIPSEIIYI 82
           + +   I  + GC GN     +  + K + T  N ++ +LA SD    L  G P   I  
Sbjct: 37  LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISC 96

Query: 83  WHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           + K  ++F    C +  F+       +++T+   +++RY  I  P 
Sbjct: 97  FLKK-WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPM 141

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 82.7 bits (204), Expect = 8e-20
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)

Query: 11  WGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLM 70
                  +  I  +  +Y I+ V G FGN     VI R   M TATN Y+F+LA++D L 
Sbjct: 8   QTGSPSMVTAIT-IMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA 66

Query: 71  LFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
               +P + +       + F   +C +V  +   +   ++ T+   +V+RYIA+CHP 
Sbjct: 67  TS-TLPFQSVNYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPV 122

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 78.8 bits (194), Expect = 2e-18
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
             +           D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ 
Sbjct: 164 ITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 222

Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLA +DL+M    +P    +I  K    F    C   + +      A++ T+    V+RY
Sbjct: 223 SLACADLVMGLAVVPFGAAHILTKTWT-FGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 281

Query: 122 IAICHPF 128
            AI  PF
Sbjct: 282 FAITSPF 288

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 76.5 bits (188), Expect = 1e-17
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 24  VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW 83
           +  IY II +TG  GN    +V+   K + + T+ Y   L+V+DLL +   +P   +   
Sbjct: 51  LPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAV 109

Query: 84  HKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
             +   F   +C  V  +   +  ++V  +   +++RY+AI H 
Sbjct: 110 ANWY--FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHA 151

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 75.1 bits (184), Expect = 4e-17
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 1   MNDSQY---EDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATN 57
           M+DS       LA    +    V+F V V   + LVT   GN+   V I  N+H+ T  N
Sbjct: 1   MDDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVT-IIGNILVMVSIKVNRHLQTVNN 59

Query: 58  YYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFT 117
           Y+LFSLA +DL++  + +    +Y    Y +     +C +   L    +NA+V+ +   +
Sbjct: 60  YFLFSLACADLIIGVFSMNLYTLYTVIGY-WPLGPVVCDLWLALDYVVSNASVMNLLIIS 118

Query: 118 VERYIAICHPF 128
            +RY  +  P 
Sbjct: 119 FDRYFCVTKPL 129

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 74.7 bits (183), Expect = 5e-17
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 2   NDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLF 61
           N S   D     Q D ++V+    V+ +I+L    FGN+     IA+ + + T TNY++ 
Sbjct: 22  NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFIT 80

Query: 62  SLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERY 121
           SLA +DL+M    +P    +I  K  + F    C   + +      A++ T+    V+RY
Sbjct: 81  SLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRY 139

Query: 122 IAICHPF 128
            AI  PF
Sbjct: 140 FAITSPF 146

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 74.8 bits (183), Expect = 5e-17
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 24  VTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIW 83
              + + I V    GN+  C  +  N ++   TNY++ SLA +D+ +    IP  I    
Sbjct: 24  YITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST 83

Query: 84  HKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
               +      C+ ++        +++ ++ A  ++RYIAI  P 
Sbjct: 84  G---FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 125

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 74.9 bits (183), Expect = 5e-17
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 16  DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGI 75
           D    I   +V++++I       N+   + I + K  H    Y++ +LA+SDLL      
Sbjct: 58  DKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYT 117

Query: 76  PSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHP 127
            + ++     Y          +       + +A+V ++ A  +ERYI +   
Sbjct: 118 ANLLLSGATTYK--LTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKM 167

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 73.3 bits (179), Expect = 2e-16
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%)

Query: 1   MNDSQYEDLAWGPQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYL 60
           +N +   + + G      +      + Y  +++   FGN   C+ + + + + T TNY +
Sbjct: 20  LNYTCGAENSTGASQARPHAY--YALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLV 77

Query: 61  FSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVER 120
            SLAV+DLL+    +P  +        + F    C +   L      A++  + A +++R
Sbjct: 78  VSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDR 137

Query: 121 YIAICHPF 128
           Y A+  P 
Sbjct: 138 YTAVVMPV 145

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 71.6 bits (175), Expect = 6e-16
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 17  PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
           P+        + + I V    GN+  C  +  N ++   TNY++ SLA +D+ +    IP
Sbjct: 27  PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 86

Query: 77  SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
             I        +      C+ ++        +++ ++ A  ++RYIAI  P 
Sbjct: 87  FAITISTG---FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 135

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 69.0 bits (168), Expect = 5e-15
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 20  VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEI 79
           ++  V V+  I LVT    NL     +   + +HT  N Y+ SL+V+DL++    +P  I
Sbjct: 8   LMPLVVVLSTICLVT-VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNI 66

Query: 80  IYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           +Y+     +     +C+    +   ++ A++ ++    ++RY ++  P 
Sbjct: 67  LYLLMSK-WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPL 114

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 25  TVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWH 84
            ++ +++L+    GN+     I   + + T TN ++ SLA +DL++    +P     +  
Sbjct: 16  LLMALVVLLI-VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74

Query: 85  KYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
                +   +C + + L      A++ T+    ++RY+AI  PF
Sbjct: 75  GTWL-WGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.9
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.9
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.9
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.9
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.9
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.89
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.88
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.88
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.88
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.87
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.87
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.87
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.87
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.86
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.86
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.85
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.85
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.85
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.46
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	96.17

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.90  E-value=1.1e-23  Score=156.82  Aligned_cols=110  Identities=38%  Similarity=0.673  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCC---chHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-hCccccchhh
Q psy13007         19 YVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMH---TATNYYLFSLAVSDLLMLFWGIPSEIIYIWH-KYPYMFDETI   94 (128)
Q Consensus        19 ~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~---~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~-~~~~~~~~~~   94 (128)
                      .......++|.++.++|++||+++++++.++|++|   +++|+++.|||++|++.+++.+|..+..... ...|.+|+..
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~  109 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAG  109 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHH
Confidence            34567778899999999999999999988876554   6899999999999999999999988877653 4569999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         95 CIMVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        95 C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      |++..++...+..+|++++++||+|||+||++|+
T Consensus       110 C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~  143 (510)
T 4grv_A          110 CRGYYFLRDACTYATALNVASLSVARYLAICHPF  143 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccc
Confidence            9999999999999999999999999999999996

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.90  E-value=1e-23  Score=153.94  Aligned_cols=127  Identities=22%  Similarity=0.369  Sum_probs=101.2

Q ss_pred             CCCCcCCCCCcC--CCCCcchhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHH
Q psy13007          1 MNDSQYEDLAWG--PQHDPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSE   78 (128)
Q Consensus         1 mn~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~   78 (128)
                      ||+++.......  .............+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++...|..
T Consensus         1 M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~   80 (467)
T 3uon_A            1 MDDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLY   80 (467)
T ss_dssp             -------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655433222  222233445667788999999999999999999999999999999999999999999999899988


Q ss_pred             HHHHHhhCccccchhhHHhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         79 IIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        79 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +.....+ .|.+++..|++..++..++..+|++++++||+|||+||++|+
T Consensus        81 ~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~  129 (467)
T 3uon_A           81 TLYTVIG-YWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPL  129 (467)
T ss_dssp             HHHHHSS-SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhcC-CccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8877765 499999999999999999999999999999999999999996

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.90  E-value=1.6e-23  Score=155.29  Aligned_cols=110  Identities=27%  Similarity=0.439  Sum_probs=100.6

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh
Q psy13007         18 LYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM   97 (128)
Q Consensus        18 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   97 (128)
                      ........+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++..+|..+.....+ .|.+++..|++
T Consensus        37 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~-~w~~~~~~C~~  115 (500)
T 2rh1_A           37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK-MWTFGNFWCEF  115 (500)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT-SCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCCcchhhH
Confidence            34456677889999999999999999999999999999999999999999999998999888877665 49999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         98 VSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        98 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..++..++..+|++++++||+|||+||++|+
T Consensus       116 ~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl  146 (500)
T 2rh1_A          116 WTSIDVLCVTASIETLCVIAVDRYFAITSPF  146 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHeeccC
Confidence            9999999999999999999999999999996

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.90  E-value=5.8e-23  Score=146.11  Aligned_cols=107  Identities=29%  Similarity=0.522  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhH
Q psy13007         21 IFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSF  100 (128)
Q Consensus        21 ~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  100 (128)
                      .....+++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++...|..+.....+ +|.+++..|+...+
T Consensus        32 ~~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~-~~~~~~~~C~~~~~  110 (364)
T 2ks9_A           32 IVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN-EWYYGLFYCKFHNF  110 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT-SCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccchHHHHHhHHH
Confidence            34447789999999999999999999999999999999999999999999988888877766654 48889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        101 LSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       101 ~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +...+..+|+++++++++|||+||++|+
T Consensus       111 ~~~~~~~~s~~~l~~isidRy~aI~~P~  138 (364)
T 2ks9_A          111 FPIAAVFASIYSMTAVAFDRYMAIIHPL  138 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999996

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.90  E-value=3.2e-23  Score=144.14  Aligned_cols=106  Identities=26%  Similarity=0.473  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhh
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVS   99 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~   99 (128)
                      .+....++|.++.++|++||++++.++.++|++|+|+|+++.|||++|++.++ ..|.......  ..|..|+..|+...
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~~--~~~~~~~~~c~~~~   86 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASKV--NGWIFGTFLCKVVS   86 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHH--SSSCCSSHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHHhhcc--CCCccchhHHHHHh
Confidence            35566788999999999999999999999999999999999999999999876 5666655544  34889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        100 FLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       100 ~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +....+..+|+++++++|+|||.||++|+
T Consensus        87 ~~~~~~~~~s~~~l~~isidRy~aI~~P~  115 (296)
T 2lnl_A           87 LLKEVNFYSGILLLACISVDRYLAIVHAT  115 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCS
T ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhhhhcc
Confidence            99999999999999999999999999996

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.89  E-value=9.9e-23  Score=143.78  Aligned_cols=110  Identities=25%  Similarity=0.537  Sum_probs=99.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh
Q psy13007         18 LYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM   97 (128)
Q Consensus        18 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   97 (128)
                      ........+++.+++++|++||++++.++.++|++|++.|+++.|||++|++.++...|..+.....+. |.+++..|+.
T Consensus        35 ~~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~-~~~~~~~C~~  113 (349)
T 1u19_A           35 PWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNL  113 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTS-CTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCe-eeCChhHHHH
Confidence            344556677889999999999999999999999999999999999999999999988888877766554 8889999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         98 VSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        98 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..++...+..+|+++++++++|||+||++|+
T Consensus       114 ~~~~~~~~~~~s~~~l~~isidRy~aI~~P~  144 (349)
T 1u19_A          114 EGFFATLGGEIALWSLVVLAIERYVVVCKPM  144 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheeeCCc
Confidence            9999999999999999999999999999995

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.88  E-value=2.8e-22  Score=147.63  Aligned_cols=108  Identities=25%  Similarity=0.429  Sum_probs=98.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh
Q psy13007         18 LYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM   97 (128)
Q Consensus        18 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   97 (128)
                      ...+....+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.+ +..|..+.....  .|.+++..|++
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~~--~~~~~~~~C~~  121 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVA--NWYFGNFLCKA  121 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHT--CCCSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc--CCcCCchhhhh
Confidence            445677788999999999999999999999999999999999999999999996 578888776654  48899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         98 VSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        98 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..++..++..+|++++++||+|||+||++|+
T Consensus       122 ~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~  152 (502)
T 3odu_A          122 VHVIYTVNLYSSVWILAFISLDRYLAIVHAT  152 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhheeccc
Confidence            9999999999999999999999999999996

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.88  E-value=2.2e-22  Score=146.68  Aligned_cols=109  Identities=31%  Similarity=0.585  Sum_probs=99.1

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHh
Q psy13007         18 LYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIM   97 (128)
Q Consensus        18 ~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   97 (128)
                      ........+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++. .|..+.....+ .|.+++..|++
T Consensus        14 ~~~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~-~~~~~~~~C~~   91 (464)
T 4dkl_A           14 MVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMG-TWPFGNILCKI   91 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-SCCSCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-Ccccccchhhh
Confidence            34566777889999999999999999999999999999999999999999999886 88877777665 49899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         98 VSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        98 ~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..++..++..+|++++++||+|||+||++|+
T Consensus        92 ~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~  122 (464)
T 4dkl_A           92 VISIDYYNMFTSIFTLCTMSVDRYIAVCHPV  122 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999984

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.88  E-value=6.3e-23  Score=150.52  Aligned_cols=112  Identities=21%  Similarity=0.392  Sum_probs=100.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhH
Q psy13007         16 DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETIC   95 (128)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C   95 (128)
                      +.........+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++ ..|...........|.+++..|
T Consensus        15 ~~~~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~~~~~~~~~~~C   93 (484)
T 3vw7_A           15 TSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKISYYFSGSDWQFGSELC   93 (484)
T ss_dssp             TCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHTTSCCCSCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcccchhHH
Confidence            445566778889999999999999999999999999999999999999999999976 4666666655555699999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         96 IMVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        96 ~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ++..++..++..+|++++++||+|||+||++|+
T Consensus        94 ~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~  126 (484)
T 3vw7_A           94 RFVTAAFYCNMYASILLMTVISIDRFLAVVYPM  126 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHheEEEccc
Confidence            999999999999999999999999999999996

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.87  E-value=7.5e-23  Score=150.03  Aligned_cols=109  Identities=24%  Similarity=0.399  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhh
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVS   99 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~   99 (128)
                      ......+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++..+|..+........|.+++..|++..
T Consensus        37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~  116 (481)
T 3pbl_A           37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFV  116 (481)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHH
Confidence            34555678899999999999999999999999999999999999999999999899988887777667999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        100 FLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       100 ~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ++..++..+|++++++|++|||+||++|+
T Consensus       117 ~~~~~~~~~s~~~l~~is~dRy~aI~~P~  145 (481)
T 3pbl_A          117 TLDVMMCTASIWNLCAISIDRYTAVVMPV  145 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999984

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.87  E-value=3.3e-22  Score=145.29  Aligned_cols=110  Identities=23%  Similarity=0.397  Sum_probs=98.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhH
Q psy13007         16 DPLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETIC   95 (128)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C   95 (128)
                      .+........+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++..+|..+....   .|..+...|
T Consensus        26 ~~~~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~---~~~~~~~~C  102 (447)
T 4eiy_A           26 PPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST---GFCAACHGC  102 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHT---TCEEEHHHH
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccCccHH
Confidence            34455667778899999999999999999999999999999999999999999999888997776432   366789999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         96 IMVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        96 ~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ++..++..++..+|++++++||+|||+||++|+
T Consensus       103 ~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~  135 (447)
T 4eiy_A          103 LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL  135 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHeEEeccc
Confidence            999999999999999999999999999999984

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=145.50  Aligned_cols=106  Identities=21%  Similarity=0.447  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhHH
Q psy13007         22 FPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFL  101 (128)
Q Consensus        22 ~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  101 (128)
                      ....+++.+++++|++||+++++++.+++++|+++|+++.|||++|++.++...|..+.....+ .|.+++..|++..++
T Consensus         9 ~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~-~~~~~~~~C~~~~~~   87 (452)
T 3rze_A            9 MPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS-KWSLGRPLCLFWLSM   87 (452)
T ss_dssp             CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSS-SCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCchhHhHHHHH
Confidence            4455788999999999999999999999999999999999999999999998999988887765 499999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        102 SETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       102 ~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..++..+|++++++||+|||+||++|+
T Consensus        88 ~~~~~~~s~~~l~~is~dRy~aI~~P~  114 (452)
T 3rze_A           88 DYVASTASIFSVFILCIDRYRSVQQPL  114 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeCcc
Confidence            999999999999999999999999996

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.86  E-value=4.3e-22  Score=145.96  Aligned_cols=109  Identities=23%  Similarity=0.402  Sum_probs=97.4

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHH
Q psy13007         17 PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICI   96 (128)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~   96 (128)
                      +........+++.+++++|++||+++++++.+++++|+++++++.|||++|++.++..+|..+....   .|.++...|+
T Consensus        17 ~~~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~---~~~~~~~~C~   93 (488)
T 3eml_A           17 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST---GFCAACHGCL   93 (488)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT---CCEECHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccccchHHH
Confidence            3344566778899999999999999999999999999999999999999999999988998776543   4778999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         97 MVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        97 ~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +..++..++..+|++++++||+|||++|++|+
T Consensus        94 ~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~  125 (488)
T 3eml_A           94 FIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL  125 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence            99999999999999999999999999999995

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.86  E-value=2.4e-22  Score=139.76  Aligned_cols=109  Identities=20%  Similarity=0.388  Sum_probs=99.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhh
Q psy13007         19 YVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV   98 (128)
Q Consensus        19 ~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~   98 (128)
                      ..+....+++.+++++|++||++++.++.++|++|+++|+++.|||++|++.++...|..+.....+ +|.+++..|++.
T Consensus         9 ~~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~-~~~~~~~~C~~~   87 (315)
T 4amj_A            9 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG-TWLWGSFLCELW   87 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHS-SCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcC-CeeccccHHHHH
Confidence            4456677889999999999999999999999999999999999999999999888888887776655 489999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      .++...+..+|+++++++|+|||+||++|+
T Consensus        88 ~~~~~~~~~~S~~~l~~isidRy~aI~~P~  117 (315)
T 4amj_A           88 TSLDVLCVTASIETLCVIAIDRYLAITSPF  117 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999999999999999999999999984

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.85  E-value=2.5e-21  Score=144.35  Aligned_cols=104  Identities=20%  Similarity=0.278  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhhhHH
Q psy13007         22 FPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMVSFL  101 (128)
Q Consensus        22 ~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~  101 (128)
                      ....+++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++...|..+..  ....|..+...|++..++
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~--~~~~~~~~~~~c~~~~~~  141 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS--GATTYKLTPAQWFLREGS  141 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGGTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc--cccceeeCccccchHHHH
Confidence            667788999999999999999999999999999999999999999999999888877766  233478899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007        102 SETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       102 ~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      ..++..+|++++++||+|||+||+ |+
T Consensus       142 ~~~~~~~S~~~l~~isidRy~aI~-p~  167 (520)
T 3v2y_A          142 MFVALSASVFSLLAIAIERYITML-KM  167 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-C-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhEEe-cc
Confidence            999999999999999999999999 85

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.85  E-value=3.1e-21  Score=140.94  Aligned_cols=108  Identities=22%  Similarity=0.444  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHh-hHHHHHHHHhhCccccchhhHHhh
Q psy13007         20 VIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWG-IPSEIIYIWHKYPYMFDETICIMV   98 (128)
Q Consensus        20 ~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~-~~~~~~~~~~~~~~~~~~~~C~~~   98 (128)
                      ......+++.+++++|++||+++++++.++|++|++.|+++.|||++|++.++.. +|..+...... .|.+++..|++.
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~-~~~~~~~~C~~~  111 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-KWIFGFAACKVY  111 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTT-SCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcC-CccCCHHHHHHH
Confidence            4566777889999999999999999999999999999999999999999998864 77777666554 488899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      .++..++..+|+++++++++|||++|++|+
T Consensus       112 ~~~~~~~~~~S~~~l~~isidRy~aI~~P~  141 (448)
T 2z73_A          112 GFIGGIFGFMSIMTMAMISIDRYNVIGRPM  141 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999995

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.85  E-value=1.3e-21  Score=145.53  Aligned_cols=111  Identities=27%  Similarity=0.444  Sum_probs=100.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHH
Q psy13007         17 PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICI   96 (128)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~   96 (128)
                      .........+++.+++++|++||+++++++.++|++|+++|+++.|||++|++.++...|..+.....+ .|.+++..|+
T Consensus       178 ~~~~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~-~~~~~~~~C~  256 (514)
T 3sn6_R          178 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK-TWTFGNFWCE  256 (514)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHT-SCCSCSHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcC-CeeCCcchhh
Confidence            344556677889999999999999999999999999999999999999999999988899888877665 4889999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         97 MVSFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        97 ~~~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +..++..++..+|++++++||+|||++|++|+
T Consensus       257 ~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl  288 (514)
T 3sn6_R          257 FWTSIDVLCVTASIETLCVIAVDRYFAITSPF  288 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999994

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.46  E-value=3.4e-08  Score=46.25  Aligned_cols=21  Identities=19%  Similarity=0.583  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhHhhhhcCC
Q psy13007        108 ATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus       108 ~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      +|++++++|++|||+||++|+
T Consensus         2 ~Si~~L~~is~dRy~aI~~Pl   22 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSITQAI   22 (32)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhhh
Confidence            688999999999999999984

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=96.17  E-value=0.00011  Score=39.65  Aligned_cols=29  Identities=24%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHhhhhhheeeeEecCCC
Q psy13007         23 PVTVIYVIILVTGCFGNLCTCVVIARNKH   51 (128)
Q Consensus        23 ~~~~~~~~~~~~gi~~N~~vl~~i~~~~~   51 (128)
                      ...++|++++++|++||+++++++.++|-
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~   58 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKG   58 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecc
Confidence            66788999999999999999998876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	7e-11

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.7 bits (133), Expect = 7e-11
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)

Query: 17  PLYVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIP 76
             +    +     ++++ G   N  T  V  ++K + T  NY L +LAV+DL M+F G  
Sbjct: 33  EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT 92

Query: 77  SEIIYIWHKYPYMFDETICIMVSFLSETSANATVLTITAFTVERYIAICHPF 128
           + +    H Y   F  T C +  F +       + ++    +ERY+ +C P 
Sbjct: 93  TTLYTSLHGYFV-FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.85

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=7.9e-21  Score=132.55  Aligned_cols=109  Identities=26%  Similarity=0.549  Sum_probs=99.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhheeeeEecCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCccccchhhHHhh
Q psy13007         19 YVIFPVTVIYVIILVTGCFGNLCTCVVIARNKHMHTATNYYLFSLAVSDLLMLFWGIPSEIIYIWHKYPYMFDETICIMV   98 (128)
Q Consensus        19 ~~~~~~~~~~~~~~~~gi~~N~~vl~~i~~~~~~~~~~~~~l~~La~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~   98 (128)
                      +.....+.++.+++++|++||++++.++.++|++|++.|+++.|||++|++.++...|..+.....+. |..++..|+..
T Consensus        35 ~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~-~~~~~~~c~~~  113 (348)
T d1u19a_          35 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY-FVFGPTGCNLE  113 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTS-CTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCc-cccCchhhhhh
Confidence            34557777888999999999999999999999999999999999999999999988888887776654 77789999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhcCC
Q psy13007         99 SFLSETSANATVLTITAFTVERYIAICHPF  128 (128)
Q Consensus        99 ~~~~~~~~~~s~~~l~~iaidRy~ai~~Pl  128 (128)
                      .+....+..+++++++++++|||.+|++|+
T Consensus       114 ~~~~~~~~~~s~~~l~~is~~R~~~i~~p~  143 (348)
T d1u19a_         114 GFFATLGGEIALWSLVVLAIERYVVVCKPM  143 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             hhccccceeeecchhhhhhcccceeeeccc
Confidence            999999999999999999999999999995