Psyllid ID: psy1302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVKSTASKKIHRANKTPLYPKPRGLVPK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHccccccEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLvydeessqwnivpetnpfyiqkrlvaspqlrrpttLKAREKisqcptdagktrfigeniltlnfdicpnncknyqgpkvapSILSVLQAALqdeadidvdvkstaskkihranktplypkprglvpk
Flexible Loop (DISEMBL)
miemkqeldkkeesteeirgnystleqevQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIenfipieelkrLEQRLVYDeessqwnivpetnpfyIQKRlvaspqlrrpttlkarekisqcptdagktrfIGENILTLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVKstaskkihranktplypkprglvpk
Low Complexity Region (SEG)
MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDEllkdlklrklIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVKSTASKKIHRANKTPLYPKPRGLVPK
Disordered region (IsUnstruct)
**********************************************************************LLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQKRLVAS****************QCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADI******************************
Disordered Region (DISOPRED)
*********************YSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQW***********************************************ENILTLNFDICPNNCKNYQGPKVAPSILSVLQA*******************************PRGLV**
Disordered Region (DISEMBL)
******************RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVKSTASKKIHRANKTPLYPKPRGLVPK
Disordered Region (DISPRO)
MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPE***************LRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVK*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPSILSVLQAALQDEADIDVDVKSTASKKIHRANKTPLYPKPRGLVPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
P46871	742	Kinesin-II 95 kDa subunit	yes	N/A	0.973	0.295	0.380	2e-36
O15066	747	Kinesin-like protein KIF3	yes	N/A	0.973	0.293	0.389	1e-33
Q61771	747	Kinesin-like protein KIF3	yes	N/A	0.973	0.293	0.356	3e-31
P46867	784	Kinesin-like protein Klp6	yes	N/A	0.862	0.247	0.393	6e-30
Q29DY1	797	Kinesin-like protein Klp6	yes	N/A	0.862	0.243	0.391	5e-29
A0JN40	792	Kinesin-like protein KIF3	no	N/A	0.711	0.202	0.410	5e-22
Q5R706	793	Kinesin-like protein KIF3	yes	N/A	0.711	0.201	0.413	7e-22
O35066	796	Kinesin-like protein KIF3	no	N/A	0.711	0.201	0.410	2e-21
O55165	796	Kinesin-like protein KIF3	no	N/A	0.711	0.201	0.410	2e-21
O14782	793	Kinesin-like protein KIF3	no	N/A	0.711	0.201	0.404	2e-21

>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 149/242 (61%), Gaps = 23/242 (9%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           +M+++L ++++ T EI G +S+L+QEV+ K KKL+K+++K +  K DIQD+ DE  R+R+
Sbjct: 505 DMERKLKEQDDKTVEIEGTFSSLQQEVEVKTKKLKKLFAKLQSYKSDIQDLQDEHARERQ 564

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVP---ETNPFYIQ 119
           +LEQ+Q+EL+++LKL+K+I +NFIP+EE  ++  R V+DEE+ +W + P      P  + 
Sbjct: 565 ELEQTQNELIRELKLKKVIADNFIPVEERTKITTRAVFDEETEEWLLTPLAKAEGPSQMA 624

Query: 120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAP 179
           KR V++   RRP    AR          G  R+  ENIL+++ D+     ++Y+GP VAP
Sbjct: 625 KRPVSAVGNRRPIADYAR----MAAQMGGNPRYKAENILSVDLDMPNRTTRDYEGPSVAP 680

Query: 180 SILSVLQAALQDEADIDVDVK-----------STASKKIHRANKTP-----LYPKPRGLV 223
            + + L AALQDE D+D++V+               +  H+A   P     LYP+ RGL+
Sbjct: 681 RVQAALDAALQDEDDLDLEVQPEVFKAKTKLKKDKVRSKHKAVAKPGSNSQLYPQARGLI 740

Query: 224 PK 225
            K
Sbjct: 741 QK 742

Strongylocentrotus purpuratus (taxid: 7668)

>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 149/244 (61%), Gaps = 25/244 (10%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           E++Q+++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct: 508 EIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 567

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
           +LEQ+Q+EL ++LKL+ LIIENFIP+EE  ++  R  +DEE   W + P T      + K
Sbjct: 568 ELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRAFFDEEEDHWKLHPITRLENQQMMK 627

Query: 121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
           R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP +AP 
Sbjct: 628 RPVSAVGYKRPLSQHARMSMMIRP----EARYRAENIVLLELDMPSRTTRDYEGPAIAPK 683

Query: 181 ILSVLQAALQDEADIDVDV---KSTASKK-------------IHRANKTP---LYPKPRG 221
           + + L AALQDE +I VD    +STA+KK                ++ TP   LYP+ RG
Sbjct: 684 VQAALDAALQDEDEIQVDASSFESTANKKSKARPKSGRKSGSSSSSSGTPASQLYPQSRG 743

Query: 222 LVPK 225
           LVPK
Sbjct: 744 LVPK 747

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.

Homo sapiens (taxid: 9606)

>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 141/244 (57%), Gaps = 25/244 (10%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           E++Q+++ ++E T E++  Y++L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct: 508 EIQQQMESRDEETLELKETYTSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 567

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
           +LEQ+Q+EL ++LKL+ LIIENFIP+EE  ++  R  +D+E   W + P T      + K
Sbjct: 568 ELEQTQNELTRELKLKHLIIENFIPLEEKNKIMNRSFFDDEEDHWKLHPITRLENQQMMK 627

Query: 121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
           R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP ++P 
Sbjct: 628 RPVSAVGYKRPLSQHARMSMMIRP----EPRYRAENIMLLELDMPSRTTRDYEGPAISPK 683

Query: 181 ILSVLQAALQDEADIDVDVKSTASKKIHRANKTP-------------------LYPKPRG 221
           + + L AALQDE +I VD  S  S    +    P                    YP+ RG
Sbjct: 684 VQAALDAALQDEDEIQVDASSFESTASRKPKARPKSGRKSGSSSSSSGNPASQFYPQSRG 743

Query: 222 LVPK 225
           LVPK
Sbjct: 744 LVPK 747

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.

Mus musculus (taxid: 10090)

>sp|P46867|KLP68_DROME Kinesin-like protein Klp68D OS=Drosophila melanogaster GN=Klp68D PE=2 SV=2

 Score =  130 bits (328), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 125/206 (60%), Gaps = 12/206 (5%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           IE++Q+L+ +EE+T EIR    +LEQEV+ K +KL K Y+KY  ++Q++ D   + N+D 
Sbjct: 499 IEIQQQLELQEETTLEIRERNVSLEQEVELKKRKLSKCYAKYLALQQELNDCKSDHNQDL 558

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV-------PETN 114
           R+LE +Q+EL+K+LK + LII+NF+PIE  +RL  +  YDEE  +W          P  +
Sbjct: 559 RELEMAQNELVKELKRQLLIIDNFVPIEVKQRLYTQAKYDEEQEEWKFSSMSLPTPPGGD 618

Query: 115 PFYIQKRLVASPQLRRPTTLKA-REKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQ 173
             +  KR V+ PQ RRPT+  A +E  S  P+     RF  ENI+    ++     + Y+
Sbjct: 619 GKFSSKRPVSHPQRRRPTSEYALQEAKSNSPSS---LRFKSENIVNYELEMPCRTTQEYR 675

Query: 174 GPKVAPSILSVLQAALQDEADIDVDV 199
            PKV+ S+ +VL  A+Q   D D+D+
Sbjct: 676 TPKVSASLQAVLAQAMQTGGD-DIDI 700

Plus-end directed microtubule motor that may be used for anterograde axonal transport and could conceivably move cargos in fly neurons different than those moved by kinesin heavy chain or other plus-end directed motors.

Drosophila melanogaster (taxid: 7227)

>sp|Q29DY1|KLP68_DROPS Kinesin-like protein Klp68D OS=Drosophila pseudoobscura pseudoobscura GN=Klp68D PE=3 SV=1

 Score =  127 bits (319), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 13/207 (6%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           IE++Q+L+ +EE+T EIR    +LEQEV+ K +KL K Y+KY  ++Q++ D   + N+D 
Sbjct: 502 IEIQQQLELQEETTLEIRERNVSLEQEVELKKRKLSKCYAKYLALQQELNDCKHDHNQDL 561

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNI------VPETNP 115
           R+LE +Q+EL+K+LK + LII+NF+PIE  +RL  +  YDEE  +W        +P +  
Sbjct: 562 RELEMAQNELVKELKRQLLIIDNFVPIEVKQRLYTQAKYDEEQEEWKFSSFPLPLPPSGG 621

Query: 116 FYIQ--KRLVASPQLRRPTTLKA-REKISQCPTDAGKTRFIGENILTLNFDICPNNCKNY 172
              Q  +R V+ PQ RRPT+  A +E  S  P+     RF  ENI++   ++     + Y
Sbjct: 622 DGRQGYRRPVSHPQRRRPTSEHALQEAKSNAPSS---LRFKSENIVSYELEMPCRTTQEY 678

Query: 173 QGPKVAPSILSVLQAALQDEADIDVDV 199
           + PKV+ S+ +VL  A+Q   D D+D+
Sbjct: 679 RTPKVSASLQAVLAQAMQTGGD-DIDI 704

Plus-end directed microtubule motor that may be used for anterograde axonal transport and could conceivably move cargos in fly neurons different than those moved by kinesin heavy chain or other plus-end directed motors.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|A0JN40|KIF3C_BOVIN Kinesin-like protein KIF3C OS=Bos taurus GN=KIF3C PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           EM+QE+  ++E T E+RG Y++L+QEV+ K KKL+K+Y+K + VK +IQD  DE+ R R+
Sbjct: 553 EMQQEMMLRDEETMELRGTYTSLQQEVEVKTKKLKKLYAKLQAVKAEIQDQHDEYIRVRQ 612

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVP----ETNPFYI 118
           DLE++Q+E  ++LKL+ LIIENFIP EE  ++  RL  D E  QW   P      N   +
Sbjct: 613 DLEEAQNEQTRELKLKYLIIENFIPPEEKNKIMNRLFLDCEEEQWKFQPLVPSGANSSQM 672

Query: 119 QKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICP 166
           +KR  ++   +RP +  AR  ++         R+  ENI+ L  D+ P
Sbjct: 673 KKRPTSAVGYKRPISQYARVAMAM----GSHPRYRAENIMFLELDVSP 716

Microtubule-based anterograde translocator for membranous organelles.

Bos taurus (taxid: 9913)

>sp|Q5R706|KIF3C_PONAB Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3C PE=2 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 105/167 (62%), Gaps = 7/167 (4%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           EM+QE+  ++E T E+RG Y++L+QEV+ K KKL+K+Y+K + VK +IQD  DE+ R R+
Sbjct: 556 EMQQEMMLRDEETMELRGTYTSLQQEVEVKTKKLKKLYAKLQAVKAEIQDQHDEYIRVRQ 615

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWN---IVPETNPFYIQ 119
           DLE++Q+E  ++LKL+ LIIENFIP EE  ++  RL  D E  QW    +VP      ++
Sbjct: 616 DLEEAQNEQTRELKLKYLIIENFIPPEEKNKIMNRLFLDCEEEQWKFQPLVPAGVNSQMK 675

Query: 120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICP 166
           KR  ++   +RP +  AR  ++         R+  ENI+ L  D+ P
Sbjct: 676 KRPTSAVGYKRPISQYARVAMAM----GSHPRYRAENIMFLELDVSP 718

Microtubule-based anterograde translocator for membranous organelles.

Pongo abelii (taxid: 9601)

>sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C OS=Mus musculus GN=Kif3c PE=2 SV=3

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           EM+QE+  ++E T E+RG YS+L+QEV+ K KKL+K+Y+K + VK +IQD  +E+ R R+
Sbjct: 557 EMQQEMLLRDEETMELRGTYSSLQQEVEVKTKKLKKLYAKLQAVKAEIQDQHEEYIRVRQ 616

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVP----ETNPFYI 118
           DLE++Q+E  ++LKL+ LIIENFIP EE  ++  RL  D E  QW   P      N   +
Sbjct: 617 DLEEAQNEQTRELKLKYLIIENFIPPEEKNKIMNRLFLDCEEEQWRFQPLVPAGVNNSQM 676

Query: 119 QKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICP 166
           +KR  ++   +RP +  AR  ++         R+  ENI+ L  D+ P
Sbjct: 677 KKRPTSAVGYKRPISQYARVAMAM----GSHPRYRAENIMFLELDVSP 720

Microtubule-based anterograde translocator for membranous organelles.

Mus musculus (taxid: 10090)

>sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C OS=Rattus norvegicus GN=Kif3c PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           EM+QE+  ++E T E+RG YS+L+QEV+ K KKL+K+Y+K + VK +IQD  +E+ R R+
Sbjct: 557 EMQQEMLLRDEETMELRGTYSSLQQEVEVKTKKLKKLYAKLQAVKAEIQDQHEEYIRVRQ 616

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVP----ETNPFYI 118
           DLE++Q+E  ++LKL+ LIIENFIP EE  ++  RL  D E  QW   P      N   +
Sbjct: 617 DLEEAQNEQTRELKLKYLIIENFIPPEEKNKIMNRLFLDCEEEQWKFQPLVPAGVNNSQM 676

Query: 119 QKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICP 166
           +KR  ++   +RP +  AR  ++         R+  ENI+ L  D+ P
Sbjct: 677 KKRPTSAVGYKRPISQYARVAMAM----GSHPRYRAENIMFLELDVSP 720

Microtubule-based anterograde translocator for membranous organelles.

Rattus norvegicus (taxid: 10116)

>sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3C PE=1 SV=3

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 3   EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
           EM+QE+  ++E T E+RG Y++L+QEV+ K KKL+K+Y+K + VK +IQD  DE+ R R+
Sbjct: 555 EMQQEMMLRDEETMELRGTYTSLQQEVEVKTKKLKKLYAKLQAVKAEIQDQHDEYIRVRQ 614

Query: 63  DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVP----ETNPFYI 118
           DLE++Q+E  ++LKL+ LIIENFIP EE  ++  RL  D E  QW   P      +   +
Sbjct: 615 DLEEAQNEQTRELKLKYLIIENFIPPEEKNKIMNRLFLDCEEEQWKFQPLVPAGVSSSQM 674

Query: 119 QKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICP 166
           +KR  ++   +RP +  AR  ++         R+  ENI+ L  D+ P
Sbjct: 675 KKRPTSAVGYKRPISQYARVAMAM----GSHPRYRAENIMFLELDVSP 718

Microtubule-based anterograde translocator for membranous organelles.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
345481744	724	PREDICTED: kinesin-like protein KIF3B is	0.973	0.302	0.427	2e-44
340723479	725	PREDICTED: kinesin-like protein KIF3B-li	0.973	0.302	0.419	1e-43
350422593	725	PREDICTED: kinesin-like protein KIF3B-li	0.973	0.302	0.419	1e-43
307179556	729	Kinesin-like protein KIF3B [Camponotus f	0.977	0.301	0.419	6e-43
307192948	729	Kinesin-like protein KIF3B [Harpegnathos	0.977	0.301	0.425	8e-43
322785855	726	hypothetical protein SINV_09599 [Solenop	0.977	0.303	0.420	1e-42
332025181	726	Kinesin-like protein KIF3B [Acromyrmex e	0.977	0.303	0.420	4e-42
48115199	725	PREDICTED: kinesin 2A [Apis mellifera]	0.973	0.302	0.423	2e-41
380021407	725	PREDICTED: kinesin-like protein KIF3B is	0.973	0.302	0.423	2e-41
383855471	726	PREDICTED: kinesin-like protein KIF3B-li	0.977	0.303	0.395	1e-39

>gi|345481744|ref|XP_003424442.1| PREDICTED: kinesin-like protein KIF3B isoform 1 [Nasonia vitripennis] gi|345481746|ref|XP_003424443.1| PREDICTED: kinesin-like protein KIF3B isoform 2 [Nasonia vitripennis]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/241 (42%), Positives = 150/241 (62%), Gaps = 22/241 (9%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +T  +R  ++TL+QEV  K++KL+K Y+K + +KQD+ D+ +E+NRDR
Sbjct: 489 VEMQQKLEDQELTTLGVRETFTTLQQEVDVKSRKLRKYYAKLQVLKQDLDDVTNEYNRDR 548

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQ-- 119
           R+LEQ+Q EL+K+LKL+ LII+NFIP+EE  ++  R+ +DE+   W +V E  P  ++  
Sbjct: 549 RELEQTQHELMKELKLKYLIIDNFIPVEEKHKILSRVRFDEDEDCW-VVKEPEPSSVENI 607

Query: 120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAP 179
           KR V+ P LRRP T  AR  ++         R+ GENIL L FD+      +YQ P +AP
Sbjct: 608 KRPVSVPGLRRPITEHARTALAM----GRGHRYAGENILNLEFDMPARTTLDYQKPVIAP 663

Query: 180 SILSVLQAALQDEADIDVDVKSTASKKIHRANK---------------TPLYPKPRGLVP 224
           +I +VL+ AL DE DIDVD  +   K   R                   P+YPK RGLVP
Sbjct: 664 TIQAVLEKALCDEGDIDVDASNANFKSRSRIQSARARPKSVGKIPQIPAPIYPKTRGLVP 723

Query: 225 K 225
           K
Sbjct: 724 K 724

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723479|ref|XP_003400117.1| PREDICTED: kinesin-like protein KIF3B-like [Bombus terrestris]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 149/241 (61%), Gaps = 22/241 (9%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   ++  YS L+QEV  K++KL+K ++K + +KQ+++D+ ++FNRDR
Sbjct: 490 VEMQQKLEDEELTMLGVKETYSNLQQEVDVKSRKLRKCFNKLQVLKQELEDVTNDFNRDR 549

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQ-- 119
           RDLEQ+Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W +V ET P  +   
Sbjct: 550 RDLEQTQHELMKELKLKYLIIENFIPDEEKNKILSRIHLDEEEDGW-VVKETEPSSVDLI 608

Query: 120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAP 179
           +R  + P  RRP +  AR  ++      G +R+ GENIL L+ D+      +YQGP +AP
Sbjct: 609 RRPTSIPGARRPVSEYARIALAM----GGGSRYAGENILNLDLDMPARTTLDYQGPAIAP 664

Query: 180 SILSVLQAALQDEADIDVDVKSTASKKIHRANK---------------TPLYPKPRGLVP 224
           +I +VL+ AL+DE DIDVD  S   +   R                   P+YPK RGLVP
Sbjct: 665 TIQAVLEEALRDEGDIDVDASSAKLRSKPRLQSAKVRPKSVGKIPQIPAPVYPKMRGLVP 724

Query: 225 K 225
           K
Sbjct: 725 K 725

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422593|ref|XP_003493221.1| PREDICTED: kinesin-like protein KIF3B-like [Bombus impatiens]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 149/241 (61%), Gaps = 22/241 (9%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   ++  YS L+QEV  K++KL+K ++K + +KQ+++D+ ++FNRDR
Sbjct: 490 VEMQQKLEDEELTMLGVKETYSNLQQEVDVKSRKLRKCFNKLQVLKQELEDVTNDFNRDR 549

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQ-- 119
           RDLEQ+Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W +V ET P  +   
Sbjct: 550 RDLEQTQHELMKELKLKYLIIENFIPDEEKNKILSRIHLDEEEDGW-VVKETEPSSVDLI 608

Query: 120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAP 179
           +R  + P  RRP +  AR  ++      G +R+ GENIL L+ D+      +YQGP +AP
Sbjct: 609 RRPTSIPGARRPVSEYARIALAM----GGGSRYAGENILNLDLDMPARTTLDYQGPAIAP 664

Query: 180 SILSVLQAALQDEADIDVDVKSTASKKIHRANK---------------TPLYPKPRGLVP 224
           +I +VL+ AL+DE DIDVD  S   +   R                   P+YPK RGLVP
Sbjct: 665 TIQAVLEEALRDEGDIDVDASSAKLRSKPRLQSAKIRPKSVGKIPQIPAPVYPKMRGLVP 724

Query: 225 K 225
           K
Sbjct: 725 K 725

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179556|gb|EFN67870.1| Kinesin-like protein KIF3B [Camponotus floridanus]

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 149/241 (61%), Gaps = 21/241 (8%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   +R  Y+TL+QEV  K++KL+K ++K + +KQ+++D+  ++NRDR
Sbjct: 493 VEMQQKLEDEELTMVGVRETYTTLQQEVDVKSRKLRKCFTKLQALKQELEDVTSDYNRDR 552

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV-PETNPFYIQK 120
           RDLEQ Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W +  PE +   I K
Sbjct: 553 RDLEQEQHELMKELKLKYLIIENFIPEEEKTKILSRIHLDEEEDCWVMNDPEPSSVDIIK 612

Query: 121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
           R  + P  RRP +  AR  ++         R+ GENIL L+ D+      +YQGP +AP+
Sbjct: 613 RPTSVPGARRPVSEYARIALAM----GRGCRYAGENILNLDLDMPARTTLDYQGPAIAPT 668

Query: 181 ILSVLQAALQDEADIDVDVKST---ASKKIHRANK-------------TPLYPKPRGLVP 224
           I +VL+ AL+DE DIDVD  ST   +  ++  A +              P+YPK RGLVP
Sbjct: 669 IQAVLEEALRDEGDIDVDASSTRLRSKTRLQSAARVRPKSVTKMQQIPAPVYPKTRGLVP 728

Query: 225 K 225
           K
Sbjct: 729 K 729

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192948|gb|EFN75964.1| Kinesin-like protein KIF3B [Harpegnathos saltator]

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 102/240 (42%), Positives = 148/240 (61%), Gaps = 20/240 (8%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   +R  Y+TL+QEV  K++KL+K ++K + +KQ+++D+  ++NRDR
Sbjct: 494 VEMQQKLEDEELTMVGVRETYTTLQQEVDVKSRKLRKCFTKLQALKQELEDVTSDYNRDR 553

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV-PETNPFYIQK 120
           RDLEQ Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W +  PE +   I K
Sbjct: 554 RDLEQEQHELMKELKLKYLIIENFIPEEEKTKILTRIHLDEEEDCWVVKDPEPSNIDIIK 613

Query: 121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
           R  + P  RRP +  AR  ++         R+ GENIL L+ D+      +YQGP +AP+
Sbjct: 614 RPTSMPGTRRPVSEYARIALAM----GRGCRYAGENILNLDLDMPTRTTLDYQGPAIAPT 669

Query: 181 ILSVLQAALQDEADIDVDVKST---ASKKIHRAN------------KTPLYPKPRGLVPK 225
           I +VL+ AL+DE DIDVD  ST   A  ++  A               P+YPK RGLVPK
Sbjct: 670 IQAVLEEALRDEGDIDVDASSTRLRAKPRLQSARVRPKSVSKVQQIPAPVYPKTRGLVPK 729

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785855|gb|EFZ12474.1| hypothetical protein SINV_09599 [Solenopsis invicta]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 149/240 (62%), Gaps = 20/240 (8%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   +R  Y+TL+QEV  K++KL+K ++K + +KQ+++D+  ++NRDR
Sbjct: 491 VEMQQKLEDEELTMVGVRETYTTLQQEVDVKSRKLRKCFTKLQALKQELEDVTSDYNRDR 550

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV-PETNPFYIQK 120
           RDLEQ Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W +  PE +     K
Sbjct: 551 RDLEQEQHELMKELKLKYLIIENFIPEEEKAKILSRIHLDEEEDCWVVKDPEPSSIDAIK 610

Query: 121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
           R  ++P  RRP +  AR  ++         R+ GENIL L+ D+      +YQGP +AP+
Sbjct: 611 RPTSAPGSRRPVSEYARIALAM----GRGCRYAGENILNLDLDMPARTTLDYQGPAIAPT 666

Query: 181 ILSVLQAALQDEADIDVDVKST--------ASKKIHRANKT-------PLYPKPRGLVPK 225
           I +VL+ AL+DE DIDVD  ST         S ++   + T       P+YPK RGLVPK
Sbjct: 667 IQAVLEEALRDEGDIDVDASSTRLRIKPRLQSARVRPKSVTKMQQIPAPVYPKTRGLVPK 726

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025181|gb|EGI65361.1| Kinesin-like protein KIF3B [Acromyrmex echinatior]

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 147/240 (61%), Gaps = 20/240 (8%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   +R  Y+TL+QEV  K++KL+K ++K + +KQ+++D+  ++NRDR
Sbjct: 491 VEMQQKLEDEELTMVGVRETYTTLQQEVDVKSRKLRKCFTKLQALKQELEDVTSDYNRDR 550

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV-PETNPFYIQK 120
           RDLEQ Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W +  PE +     K
Sbjct: 551 RDLEQEQHELMKELKLKYLIIENFIPEEEKTKILSRIHLDEEEDCWVVKDPEPSSIDAIK 610

Query: 121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
           R  + P  RRP +  AR  ++         R+ GENIL L+ D+      +YQGP +AP+
Sbjct: 611 RPTSVPGARRPVSEYARIALAM----GRGCRYAGENILNLDLDMPARTTLDYQGPAIAPT 666

Query: 181 ILSVLQAALQDEADIDVDVKSTASKKIHR----------ANK-----TPLYPKPRGLVPK 225
           I +VL+ AL+DE DIDVD  +T  +   R           NK      P+YPK RGLVPK
Sbjct: 667 IQAVLEEALRDEGDIDVDASNTRLRTKTRLQSARVRPKSVNKMQQIPAPVYPKTRGLVPK 726

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48115199|ref|XP_393174.1| PREDICTED: kinesin 2A [Apis mellifera]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 146/241 (60%), Gaps = 22/241 (9%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   ++  YS L+QEV  K++KL+K ++K + +KQ+++D+ ++FNRDR
Sbjct: 490 VEMQQKLEDEELTMLGVKETYSNLQQEVDVKSRKLRKCFNKLQVLKQELEDVTNDFNRDR 549

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQ-- 119
           RDLEQ+Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W IV E  P  I   
Sbjct: 550 RDLEQTQHELMKELKLKYLIIENFIPEEEKNKILSRIHLDEEEDCW-IVKEPEPSSIDLI 608

Query: 120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAP 179
           KR  + P  RRP +  AR  ++         R+ GENIL L+ D+      +YQGP +AP
Sbjct: 609 KRPTSIPGARRPVSEYARIALAM----GRGCRYAGENILNLDLDMPARTTLDYQGPVIAP 664

Query: 180 SILSVLQAALQDEADIDVDVKSTASKKIHRANK---------------TPLYPKPRGLVP 224
           +I +VL+ AL+DE DIDVD  S   +   R                   P+YPK RGLVP
Sbjct: 665 TIQAVLEEALRDEGDIDVDASSAKLRSKPRLQSAKIRPKSVGKIPQIPAPVYPKTRGLVP 724

Query: 225 K 225
           K
Sbjct: 725 K 725

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021407|ref|XP_003694557.1| PREDICTED: kinesin-like protein KIF3B isoform 1 [Apis florea] gi|380021409|ref|XP_003694558.1| PREDICTED: kinesin-like protein KIF3B isoform 2 [Apis florea]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/241 (42%), Positives = 146/241 (60%), Gaps = 22/241 (9%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   ++  YS L+QEV  K++KL+K ++K + +KQ+++D+ ++FNRDR
Sbjct: 490 VEMQQKLEDEELTMLGVKETYSNLQQEVDVKSRKLRKCFNKLQVLKQELEDVTNDFNRDR 549

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQ-- 119
           RDLEQ+Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W IV E  P  I   
Sbjct: 550 RDLEQTQHELMKELKLKYLIIENFIPEEEKNKILSRIHLDEEEDCW-IVKEPEPSSIDLI 608

Query: 120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAP 179
           KR  + P  RRP +  AR  ++         R+ GENIL L+ D+      +YQGP +AP
Sbjct: 609 KRPTSIPGARRPVSEYARIALAM----GRGCRYAGENILNLDLDMPARTTLDYQGPVIAP 664

Query: 180 SILSVLQAALQDEADIDVDVKSTASKKIHRANK---------------TPLYPKPRGLVP 224
           +I +VL+ AL+DE DIDVD  S   +   R                   P+YPK RGLVP
Sbjct: 665 TIQAVLEEALRDEGDIDVDASSAKLRSKPRLQSAKIRPKSVGKIPQIPAPVYPKTRGLVP 724

Query: 225 K 225
           K
Sbjct: 725 K 725

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855471|ref|XP_003703234.1| PREDICTED: kinesin-like protein KIF3B-like [Megachile rotundata]

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 144/240 (60%), Gaps = 20/240 (8%)

Query: 2   IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
           +EM+Q+L+ +E +   ++  Y+ L+QEV  K++KL+K ++K + +KQ+++D+ ++FNRDR
Sbjct: 491 VEMQQKLEDEELTMLGVKETYTNLQQEVDVKSRKLRKCFTKLQVLKQELEDVTNDFNRDR 550

Query: 62  RDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV-PETNPFYIQK 120
           RDLEQ+Q EL+K+LKL+ LIIENFIP EE  ++  R+  DEE   W +  PE +     +
Sbjct: 551 RDLEQTQHELMKELKLKYLIIENFIPEEEKNKILSRIHLDEEEDCWVVKDPEPSSIEFIR 610

Query: 121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
           R  +    RRP +  AR  ++         R+ GENIL L+ D+      +YQGP +AP+
Sbjct: 611 RPTSVAGARRPVSEYARIALAM----GKGCRYAGENILNLDLDMPARTTLDYQGPAIAPT 666

Query: 181 ILSVLQAALQDEADIDVDVKSTASKKIHRANK---------------TPLYPKPRGLVPK 225
           I +VL+ AL+DE DIDVD  +   +   R                   P+YPK RGLVPK
Sbjct: 667 IQAVLEEALRDEGDIDVDASNARLRSKPRLQSAKIRPKSVGKIPQIPAPVYPKTRGLVPK 726

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
ZFIN|ZDB-GENE-050119-3	775	kif3b "kinesin family member 3	0.973	0.282	0.372	3.8e-36
UNIPROTKB|F1N020	743	KIF3B "Uncharacterized protein	0.973	0.294	0.381	1.3e-35
UNIPROTKB|B4DSR5	373	KIF3B "Kinesin-like protein KI	0.973	0.587	0.372	1.9e-35
UNIPROTKB|P46871	742	KRP95 "Kinesin-II 95 kDa subun	0.973	0.295	0.367	2.2e-35
UNIPROTKB|Q5F423	739	KIF3B "Uncharacterized protein	0.973	0.296	0.370	3.6e-35
UNIPROTKB|O15066	747	KIF3B "Kinesin-like protein KI	0.973	0.293	0.372	1.3e-34
UNIPROTKB|E2QUS2	747	KIF3B "Uncharacterized protein	0.973	0.293	0.368	4.6e-34
UNIPROTKB|F1S519	757	KIF3B "Uncharacterized protein	0.973	0.289	0.364	4.7e-34
MGI|MGI:107688	747	Kif3b "kinesin family member 3	0.973	0.293	0.352	1.5e-32
FB|FBgn0004381	784	Klp68D "Kinesin-like protein a	0.862	0.247	0.368	8.4e-29

ZFIN|ZDB-GENE-050119-3 kif3b "kinesin family member 3B" [Danio rerio (taxid:7955)]

 Score = 366 (133.9 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
 Identities = 86/231 (37%), Positives = 128/231 (55%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             EMKQE++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +IQD  DE  + R+
Sbjct:   517 EMKQEMECRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQSVKSEIQDAQDEHVKYRQ 576

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPET----NPFYI 118
             +LEQ+Q+E          IIENFIP+EE  ++  R  +DEE   W + P T    +   +
Sbjct:   577 ELEQTQNELTRELKLKHLIIENFIPMEEKNKIVTRATFDEEDDLWKMTPITRIQNSDHQM 636

Query:   119 QKRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVA 178
              KR V++   RRP +  AR  +   P      R+  ENIL L  D+     K+Y+GP +A
Sbjct:   637 MKRPVSAVGYRRPLSQHARMAMLMRPD----VRYKAENILLLELDLPSRTTKDYEGPVIA 692

Query:   179 PSILSVLQAALQDEADIDVDVK----STASKKIHRANKTPLYPKPRGLVPK 225
             P + + L+ AL++E +I VD      S  S     A+      KP+   PK
Sbjct:   693 PKVAAALEDALREEDEIQVDASGFHASLGSSPGLSASAAGFSKKPKSGRPK 743

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005871 "kinesin complex" evidence=IDA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0046530 "photoreceptor cell differentiation" evidence=IMP

GO:0005874 "microtubule" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0048793 "pronephros development" evidence=IMP

GO:0043584 "nose development" evidence=IMP

GO:0048884 "neuromast development" evidence=IMP

GO:0048839 "inner ear development" evidence=IGI;IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0035845 "photoreceptor cell outer segment organization" evidence=IGI

UNIPROTKB|F1N020 KIF3B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 1.3e-35, P = 1.3e-35
 Identities = 93/244 (38%), Positives = 139/244 (56%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             E++Q+++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct:   504 EIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 563

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
             +LEQ+Q+E          IIENFIP+EE  ++  R  +DEE   W + P T      + K
Sbjct:   564 ELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRSFFDEEEDHWKLHPITRLENQQMMK 623

Query:   121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
             R V++   RRP +  AR  +   P      R+  ENI+ L  D+     ++Y+GP +AP 
Sbjct:   624 RPVSAVGYRRPLSQHARMSMMVRPD----VRYRAENIMLLELDMPSRTTRDYEGPAIAPK 679

Query:   181 ILSVLQAALQDEADIDVDV---KSTASKKIHRANK-------------TP---LYPKPRG 221
             + + L AALQDE +I VD    +STA KK     K             TP   LYP+PRG
Sbjct:   680 VQAALDAALQDEDEIQVDASSFESTAHKKTKARPKSGRKSGSSSSSSGTPASQLYPQPRG 739

Query:   222 LVPK 225
             LVPK
Sbjct:   740 LVPK 743

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|B4DSR5 KIF3B "Kinesin-like protein KIF3B" [Homo sapiens (taxid:9606)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 91/244 (37%), Positives = 140/244 (57%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             E++Q+++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct:   134 EIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 193

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
             +LEQ+Q+E          IIENFIP+EE  ++  R  +DEE   W + P T      + K
Sbjct:   194 ELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRAFFDEEEDHWKLHPITRLENQQMMK 253

Query:   121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
             R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP +AP 
Sbjct:   254 RPVSAVGYKRPLSQHARMSMMIRP----EARYRAENIVLLELDMPSRTTRDYEGPAIAPK 309

Query:   181 ILSVLQAALQDEADIDVDV---KSTASKKIHRANK-------------TP---LYPKPRG 221
             + + L AALQDE +I VD    +STA+KK     K             TP   LYP+ RG
Sbjct:   310 VQAALDAALQDEDEIQVDASSFESTANKKSKARPKSGRKSGSSSSSSGTPASQLYPQSRG 369

Query:   222 LVPK 225
             LVPK
Sbjct:   370 LVPK 373

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|P46871 KRP95 "Kinesin-II 95 kDa subunit" [Strongylocentrotus purpuratus (taxid:7668)]

 Score = 390 (142.3 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 89/242 (36%), Positives = 141/242 (58%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             +M+++L ++++ T EI G +S+L+QEV+ K KKL+K+++K +  K DIQD+ DE  R+R+
Sbjct:   505 DMERKLKEQDDKTVEIEGTFSSLQQEVEVKTKKLKKLFAKLQSYKSDIQDLQDEHARERQ 564

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVP---ETNPFYIQ 119
             +LEQ+Q+E          I +NFIP+EE  ++  R V+DEE+ +W + P      P  + 
Sbjct:   565 ELEQTQNELIRELKLKKVIADNFIPVEERTKITTRAVFDEETEEWLLTPLAKAEGPSQMA 624

Query:   120 KRLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAP 179
             KR V++   RRP    AR          G  R+  ENIL+++ D+     ++Y+GP VAP
Sbjct:   625 KRPVSAVGNRRPIADYARMAAQM----GGNPRYKAENILSVDLDMPNRTTRDYEGPSVAP 680

Query:   180 SILSVLQAALQDEADIDVDVKSTASK--------KI---HRANKTP-----LYPKPRGLV 223
              + + L AALQDE D+D++V+    K        K+   H+A   P     LYP+ RGL+
Sbjct:   681 RVQAALDAALQDEDDLDLEVQPEVFKAKTKLKKDKVRSKHKAVAKPGSNSQLYPQARGLI 740

Query:   224 PK 225
              K
Sbjct:   741 QK 742

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5F423 KIF3B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 3.6e-35, P = 3.6e-35
 Identities = 90/243 (37%), Positives = 142/243 (58%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             E++Q+++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct:   501 EIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 560

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPET--NPFYIQK 120
             +LEQ+Q+E          IIENFIP+EE  ++  R  +DEE  QW + P T  +   + K
Sbjct:   561 ELEQTQNELTRELKLKHLIIENFIPLEEKNKIMNRSFFDEEEDQWKLHPITRLDNQQMMK 620

Query:   121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
             R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP +AP 
Sbjct:   621 RPVSAVGYKRPLSQHARTSMMIRP----EARYRAENIVLLELDMPSRTTRDYEGPAIAPK 676

Query:   181 ILSVLQAALQDEADIDVDV---KSTASKKIHRANKT---------------PLYPKPRGL 222
             + + L+AALQDE +I VD    +ST++KK     KT                LYP+ RGL
Sbjct:   677 VQAALEAALQDEDEIQVDASTFESTSNKKPKSRPKTGRKSGGSSSAGTHSSQLYPQSRGL 736

Query:   223 VPK 225
             VPK
Sbjct:   737 VPK 739

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

UNIPROTKB|O15066 KIF3B "Kinesin-like protein KIF3B" [Homo sapiens (taxid:9606)]

 Score = 383 (139.9 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 91/244 (37%), Positives = 140/244 (57%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             E++Q+++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct:   508 EIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 567

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
             +LEQ+Q+E          IIENFIP+EE  ++  R  +DEE   W + P T      + K
Sbjct:   568 ELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRAFFDEEEDHWKLHPITRLENQQMMK 627

Query:   121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
             R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP +AP 
Sbjct:   628 RPVSAVGYKRPLSQHARMSMMIRP----EARYRAENIVLLELDMPSRTTRDYEGPAIAPK 683

Query:   181 ILSVLQAALQDEADIDVDV---KSTASKKIHRANK-------------TP---LYPKPRG 221
             + + L AALQDE +I VD    +STA+KK     K             TP   LYP+ RG
Sbjct:   684 VQAALDAALQDEDEIQVDASSFESTANKKSKARPKSGRKSGSSSSSSGTPASQLYPQSRG 743

Query:   222 LVPK 225
             LVPK
Sbjct:   744 LVPK 747

GO:0005524 "ATP binding" evidence=IEA

GO:0005873 "plus-end kinesin complex" evidence=TAS

GO:0003777 "microtubule motor activity" evidence=TAS

GO:0007368 "determination of left/right symmetry" evidence=TAS

GO:0008089 "anterograde axon cargo transport" evidence=TAS

GO:0008574 "plus-end-directed microtubule motor activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0090307 "spindle assembly involved in mitosis" evidence=IMP

GO:0007100 "mitotic centrosome separation" evidence=TAS

GO:0007052 "mitotic spindle organization" evidence=TAS

GO:0072383 "plus-end-directed vesicle transport along microtubule" evidence=TAS

GO:0016939 "kinesin II complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005813 "centrosome" evidence=NAS

GO:0005876 "spindle microtubule" evidence=NAS

UNIPROTKB|E2QUS2 KIF3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 378 (138.1 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 90/244 (36%), Positives = 139/244 (56%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             E++Q+++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct:   508 EIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 567

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
             +LEQ+Q+E          IIENFIP+EE  ++  R  +DEE   W + P T      + K
Sbjct:   568 ELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRSFFDEEEDHWKLHPITRLENQQMMK 627

Query:   121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
             R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP +AP 
Sbjct:   628 RPVSAVGYKRPLSQHARMSMMIRP----EARYRAENIVLLELDMPSRTTRDYEGPAIAPK 683

Query:   181 ILSVLQAALQDEADIDVDV---KSTASKKIHRANK-------------TP---LYPKPRG 221
             + + L AALQDE +I VD    +ST +KK     K             TP   LYP+ RG
Sbjct:   684 VQAALDAALQDEDEIQVDASSFESTTNKKSKARPKSGRKSGSSSSSSGTPASQLYPQSRG 743

Query:   222 LVPK 225
             LVPK
Sbjct:   744 LVPK 747

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1S519 KIF3B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 378 (138.1 bits), Expect = 4.7e-34, P = 4.7e-34
 Identities = 89/244 (36%), Positives = 139/244 (56%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             E++Q+++ ++E T E++  YS+L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct:   518 EIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 577

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
             +LEQ+Q+E          IIENFIP+EE  ++  R  +DEE   W + P T      + K
Sbjct:   578 ELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRSFFDEEEDHWKLHPITRLENQQMMK 637

Query:   121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
             R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP +AP 
Sbjct:   638 RPVSAVGYKRPLSQHARMSMMIRP----EARYRAENIMLLELDMPSRTTRDYEGPAIAPK 693

Query:   181 ILSVLQAALQDEADIDVDV---KSTASKKIHRANKT----------------PLYPKPRG 221
             + + L AALQDE +I VD    +STA+KK     K+                 LYP+ RG
Sbjct:   694 VQAALDAALQDEDEIQVDASSFESTANKKSKARPKSGRKSGSSSSSSGTTASQLYPQSRG 753

Query:   222 LVPK 225
             LVPK
Sbjct:   754 LVPK 757

GO:0090307 "spindle assembly involved in mitosis" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

MGI|MGI:107688 Kif3b "kinesin family member 3B" [Mus musculus (taxid:10090)]

 Score = 364 (133.2 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 86/244 (35%), Positives = 139/244 (56%)

Query:     3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
             E++Q+++ ++E T E++  Y++L+QEV  K KKL+K++SK + VK +I D+ +E  ++R+
Sbjct:   508 EIQQQMESRDEETLELKETYTSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQ 567

Query:    63 DLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPETN--PFYIQK 120
             +LEQ+Q+E          IIENFIP+EE  ++  R  +D+E   W + P T      + K
Sbjct:   568 ELEQTQNELTRELKLKHLIIENFIPLEEKNKIMNRSFFDDEEDHWKLHPITRLENQQMMK 627

Query:   121 RLVASPQLRRPTTLKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPS 180
             R V++   +RP +  AR  +   P    + R+  ENI+ L  D+     ++Y+GP ++P 
Sbjct:   628 RPVSAVGYKRPLSQHARMSMMIRP----EPRYRAENIMLLELDMPSRTTRDYEGPAISPK 683

Query:   181 ILSVLQAALQDEADIDVDV---KSTASKKIHRANKT-------------P---LYPKPRG 221
             + + L AALQDE +I VD    +STAS+K     K+             P    YP+ RG
Sbjct:   684 VQAALDAALQDEDEIQVDASSFESTASRKPKARPKSGRKSGSSSSSSGNPASQFYPQSRG 743

Query:   222 LVPK 225
             LVPK
Sbjct:   744 LVPK 747

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016939 "kinesin II complex" evidence=ISO

GO:0017048 "Rho GTPase binding" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0090307 "spindle assembly involved in mitosis" evidence=ISO

FB|FBgn0004381 Klp68D "Kinesin-like protein at 68D" [Drosophila melanogaster (taxid:7227)]

 Score = 315 (115.9 bits), Expect = 8.4e-29, Sum P(2) = 8.4e-29
 Identities = 76/206 (36%), Positives = 117/206 (56%)

Query:     2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR 61
             IE++Q+L+ +EE+T EIR    +LEQEV+ K +KL K Y+KY  ++Q++ D   + N+D 
Sbjct:   499 IEIQQQLELQEETTLEIRERNVSLEQEVELKKRKLSKCYAKYLALQQELNDCKSDHNQDL 558

Query:    62 RDLEQSQDEXXXXXXXXXXIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPF----- 116
             R+LE +Q+E          II+NF+PIE  +RL  +  YDEE  +W     + P      
Sbjct:   559 RELEMAQNELVKELKRQLLIIDNFVPIEVKQRLYTQAKYDEEQEEWKFSSMSLPTPPGGD 618

Query:   117 --YIQKRLVASPQLRRPTTLKA-REKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQ 173
               +  KR V+ PQ RRPT+  A +E  S  P+     RF  ENI+    ++     + Y+
Sbjct:   619 GKFSSKRPVSHPQRRRPTSEYALQEAKSNSPSSL---RFKSENIVNYELEMPCRTTQEYR 675

Query:   174 GPKVAPSILSVLQAALQDEADIDVDV 199
              PKV+ S+ +VL  A+Q   D D+D+
Sbjct:   676 TPKVSASLQAVLAQAMQTGGD-DIDI 700

GO:0008089 "anterograde axon cargo transport" evidence=IEP;IMP

GO:0003774 "motor activity" evidence=ISS;IDA

GO:0007018 "microtubule-based movement" evidence=ISS;NAS

GO:0005873 "plus-end kinesin complex" evidence=NAS

GO:0003777 "microtubule motor activity" evidence=IEA;ISS;NAS

GO:0005871 "kinesin complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0030951 "establishment or maintenance of microtubule cytoskeleton polarity" evidence=IMP

GO:0007608 "sensory perception of smell" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
KOG4280|consensus	574		98.57
PRK11637	428	AmiB activator; Provisional	92.82
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	91.72
PRK11637	428	AmiB activator; Provisional	91.28
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.96
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.45
KOG0243|consensus	1041		89.43
PRK10780	165	periplasmic chaperone; Provisional	89.33
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.2
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.18
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.82
PF00038	312	Filament: Intermediate filament protein; InterPro:	87.56
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	87.09
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	86.95
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.59
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.24
PRK10884	206	SH3 domain-containing protein; Provisional	86.06
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	85.82
PF15272	196	BBP1_C: Spindle pole body component BBP1, C-termin	85.33
COG2433	652	Uncharacterized conserved protein [Function unknow	84.94
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.44
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.38
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	84.21
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.17
KOG0250|consensus	1074		84.06
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.04
KOG1962|consensus	216		83.85
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	83.82
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	83.6
PHA02562	562	46 endonuclease subunit; Provisional	83.27
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.06
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	82.91
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	82.82
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.77
PRK14143	238	heat shock protein GrpE; Provisional	82.76
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	82.73
PF09403	126	FadA: Adhesion protein FadA; InterPro: IPR018543 F	82.71
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	82.47
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	82.29
PRK10884	206	SH3 domain-containing protein; Provisional	81.61
PHA02562	562	46 endonuclease subunit; Provisional	81.29
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	81.2
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.92
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.4
PRK14160	211	heat shock protein GrpE; Provisional	80.25
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	80.14

>KOG4280|consensus

Probab=98.57  E-value=2e-08  Score=98.39  Aligned_cols=87  Identities=43%  Similarity=0.601  Sum_probs=84.5

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q psy1302          16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLE   95 (225)
Q Consensus        16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~   95 (225)
                      .++...|++++++++.++++++|++.++..+++|+.|+..+|.+++++++++++++.+++++..+|+++|||.++...+.
T Consensus       488 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~el~l~~~~~~~~~~~~~~~~~~  567 (574)
T KOG4280|consen  488 PELLERYSSLQEEAESKSKKLSKLLLKLLAARQEIVDIASEHLREREALEEGIRELSKELKLLLLILDNFIPTELKRIIE  567 (574)
T ss_pred             cccccccccccccchhhHHHHHHHHHHHhhhhccccccchhhhHHHHhhhhhhhHHHHHHhhhhhhhhccCChhhhcccc
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhccccc
Q psy1302          96 QRLVYDE  102 (225)
Q Consensus        96 ~~a~wdE  102 (225)
                      ....|++
T Consensus       568 ~~~~~~~  574 (574)
T KOG4280|consen  568 DELSSDE  574 (574)
T ss_pred             ccccccC
Confidence            9999975

>PRK11637 AmiB activator; Provisional

Probab=92.82  E-value=1.4  Score=41.75  Aligned_cols=55  Identities=13%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELL   72 (225)
Q Consensus        18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~   72 (225)
                      ++.+...+++++......|+.+..++..++.+|.+++.+....+..|-.-++.+-
T Consensus        80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y  134 (428)
T PRK11637         80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF  134 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444444444444444333

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=91.72  E-value=1.8  Score=36.16  Aligned_cols=81  Identities=14%  Similarity=0.300  Sum_probs=66.5

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHH
Q psy1302          15 TEEIRGNYSTLEQEVQAKNKKLQKIYS---KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE-NFIPIEE   90 (225)
Q Consensus        15 ~~~le~~yssLQeEve~KtkkLkKl~~---kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId-~FIP~ee   90 (225)
                      ...+...|.+++.++..-.+.|+.|..   -...++.+|.+++.++....+++...+..+...-.|...|.. .+-=+..
T Consensus        22 ~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~~a  101 (155)
T PF06810_consen   22 VDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNPKA  101 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            345577888888889888999998888   688899999999999999999999999999999999998877 4444444


Q ss_pred             HHHHH
Q psy1302          91 LKRLE   95 (225)
Q Consensus        91 ~~kI~   95 (225)
                      +..+.
T Consensus       102 v~all  106 (155)
T PF06810_consen  102 VKALL  106 (155)
T ss_pred             HHHhc
Confidence            44443

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PRK11637 AmiB activator; Provisional

Probab=91.28  E-value=2.7  Score=39.95  Aligned_cols=54  Identities=13%  Similarity=0.317  Sum_probs=24.7

Q ss_pred             HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302           3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE   56 (225)
Q Consensus         3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E   56 (225)
                      ++++++.+.+.+...++..-++++.+++...++|..+..++..++.+|.+++.+
T Consensus        51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~e  104 (428)
T PRK11637         51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ  104 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445444444444444444444444444444444444444444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.96  E-value=1.4  Score=40.52  Aligned_cols=86  Identities=23%  Similarity=0.331  Sum_probs=45.7

Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhc
Q psy1302          19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRL   98 (225)
Q Consensus        19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a   98 (225)
                      .....++..+++.++++|..+..+++.++.+|.++.    .++.+++..|.++.+.+.-+     .=.-..++.+++...
T Consensus       215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~----~~k~~l~~eI~e~~~~~~~~-----r~~t~~Ev~~Lk~~~  285 (325)
T PF08317_consen  215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELE----EQKQELLAEIAEAEKIREEC-----RGWTRSEVKRLKAKV  285 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHH
Confidence            333444444444444444444444444444443332    34455555555555544322     112456788888877


Q ss_pred             cccccCCccccCCCC
Q psy1302          99 VYDEESSQWNIVPET  113 (225)
Q Consensus        99 ~wdEe~~~W~l~~~~  113 (225)
                      ..=+..--|.+-.+.
T Consensus       286 ~~Le~~~gw~~~~~~  300 (325)
T PF08317_consen  286 DALEKLTGWKIVSIS  300 (325)
T ss_pred             HHHHHHHCcEEEEEe
Confidence            777777778876554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.45  E-value=4.6  Score=36.25  Aligned_cols=65  Identities=14%  Similarity=0.339  Sum_probs=44.5

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKL   80 (225)
Q Consensus        16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~l   80 (225)
                      ..+......+.-.+......|.++..+...++..|.+++..|..++.++...|..+..+|.-...
T Consensus       212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~  276 (312)
T PF00038_consen  212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELRE  276 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence            33333334444444444555556667777788888888899999999988888888888765443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0243|consensus

Probab=89.43  E-value=4.7  Score=42.99  Aligned_cols=83  Identities=13%  Similarity=0.305  Sum_probs=61.5

Q ss_pred             hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI   81 (225)
Q Consensus         2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI   81 (225)
                      .++..+++..+....++.+.|.+.++.-...++++.++..+|+....|+.+++++|+.-...|-..+.-..+..+.-.-|
T Consensus       451 eele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l  530 (1041)
T KOG0243|consen  451 EELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKL  530 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666777777778877777777888899999999999999999999998877666666666555555555555


Q ss_pred             HHh
Q psy1302          82 IEN   84 (225)
Q Consensus        82 Id~   84 (225)
                      .+.
T Consensus       531 ~~~  533 (1041)
T KOG0243|consen  531 VDR  533 (1041)
T ss_pred             HHH
Confidence            544

>PRK10780 periplasmic chaperone; Provisional

Probab=89.33  E-value=6.1  Score=32.78  Aligned_cols=75  Identities=15%  Similarity=0.296  Sum_probs=48.3

Q ss_pred             HHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           9 DKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEE------------VKQDIQDIMDEFNRDRRDLEQSQDELLKDLK   76 (225)
Q Consensus         9 e~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~------------~k~Ei~Dlq~E~~~ERedll~tir~l~relk   76 (225)
                      .+-......++..|+..+.|++.+.+.|+++..+|+.            .+.||...+.+|++..+.+.+.+.  .|+-.
T Consensus        39 p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~--~~~~e  116 (165)
T PRK10780         39 PQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRR--RRSNE  116 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            3334445678888999999999999999888888843            356666666677766665554433  23333


Q ss_pred             HHHHHHHhc
Q psy1302          77 LRKLIIENF   85 (225)
Q Consensus        77 Lk~lIId~F   85 (225)
                      +..-|+..+
T Consensus       117 ~~~~i~~ki  125 (165)
T PRK10780        117 ERNKILTRI  125 (165)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.20  E-value=8.4  Score=32.19  Aligned_cols=39  Identities=13%  Similarity=0.422  Sum_probs=18.6

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302          16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM   54 (225)
Q Consensus        16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq   54 (225)
                      ..+++.+..++++......++..+...++....|+.|++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  112 EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444455555555555555555555

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.18  E-value=3.4  Score=41.42  Aligned_cols=76  Identities=18%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK   79 (225)
Q Consensus         4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~   79 (225)
                      +..++++.+.+..+++.....+.+++......++.+..++..++.++...-..+..+|+++...+.++..++.=..
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~  282 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANR  282 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666667777777777777777777777777777777777777777777888888888877777665433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.82  E-value=2.4  Score=39.23  Aligned_cols=90  Identities=21%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q psy1302          15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRL   94 (225)
Q Consensus        15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI   94 (225)
                      ...+.++...+..++..+.+++..+...++.+...|++..    .++.+++..|+++++.+.=+     .=.-..|+.+|
T Consensus       206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~----~~k~e~~~~I~~ae~~~~~~-----r~~t~~Ei~~L  276 (312)
T smart00787      206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT----NKKSELNTEIAEAEKKLEQC-----RGFTFKEIEKL  276 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHH
Confidence            3344445555555555555555555555555555554433    34556666666666633221     12334577777


Q ss_pred             HHhccccccCCccccCCCC
Q psy1302          95 EQRLVYDEESSQWNIVPET  113 (225)
Q Consensus        95 ~~~a~wdEe~~~W~l~~~~  113 (225)
                      +.....=+..--|.+..+.
T Consensus       277 k~~~~~Le~l~g~~~~~~~  295 (312)
T smart00787      277 KEQLKLLQSLTGWKITKLS  295 (312)
T ss_pred             HHHHHHHHHHhCCeeEecc
Confidence            7777776777777776654

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=87.56  E-value=7.9  Score=34.74  Aligned_cols=81  Identities=15%  Similarity=0.336  Sum_probs=60.4

Q ss_pred             hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy1302           2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDLKLR   78 (225)
Q Consensus         2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~relkLk   78 (225)
                      +.+.+.+..--.+.-.++-..++++.+++..+.++.......+.++.+|..+..+..   ..|-+|...|..|..+|.++
T Consensus        57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl  136 (312)
T PF00038_consen   57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL  136 (312)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence            345666666666777777888888888888888888888888888888877775443   45677888888888888876


Q ss_pred             HHHH
Q psy1302          79 KLII   82 (225)
Q Consensus        79 ~lII   82 (225)
                      ..+-
T Consensus       137 ~~~h  140 (312)
T PF00038_consen  137 KQNH  140 (312)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            6553

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=87.09  E-value=5.8  Score=34.03  Aligned_cols=87  Identities=24%  Similarity=0.437  Sum_probs=48.4

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHH
Q psy1302          17 EIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF--IPIEELKRL   94 (225)
Q Consensus        17 ~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F--IP~ee~~kI   94 (225)
                      .++.....|+.+++....++..+..++..++.+-.+-     .+|..++..+.+|.++++-+..=+..|  .-|+.++++
T Consensus        66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~  140 (188)
T PF03962_consen   66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYSENDPEKIEKL  140 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            3444455555555555555555555555554433332     678888888888888887666555532  334444443


Q ss_pred             H-HhccccccCCccc
Q psy1302          95 E-QRLVYDEESSQWN  108 (225)
Q Consensus        95 ~-~~a~wdEe~~~W~  108 (225)
                      + ....+-+..+.|.
T Consensus       141 ~~~~~~~~~~anrwT  155 (188)
T PF03962_consen  141 KEEIKIAKEAANRWT  155 (188)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            3 3344445555554

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.95  E-value=20  Score=31.60  Aligned_cols=56  Identities=13%  Similarity=0.336  Sum_probs=47.9

Q ss_pred             HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302           3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN   58 (225)
Q Consensus         3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~   58 (225)
                      +.++++..-.+++..+...|..|..|++..+...+++...+.+.+.+|.+++.+-.
T Consensus        39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~   94 (251)
T PF11932_consen   39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE   94 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777788899999999999999999999999999999999999998876544

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=86.59  E-value=11  Score=30.27  Aligned_cols=60  Identities=20%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          24 TLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN-------RDRRDLEQSQDELLKDLKLRKLIIE   83 (225)
Q Consensus        24 sLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~-------~ERedll~tir~l~relkLk~lIId   83 (225)
                      .+.+++......+..|......++..+......+.       .+..++...+.+|..+-+|+.-=|+
T Consensus        63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   63 QLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444444455555555555554444444       4444555555555555555554443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.24  E-value=11  Score=30.52  Aligned_cols=46  Identities=9%  Similarity=0.362  Sum_probs=17.1

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302          16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR   61 (225)
Q Consensus        16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER   61 (225)
                      ..+...+..|++.++.+.+++..+..+..+++.++..++.-+..++
T Consensus        69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k  114 (151)
T PF11559_consen   69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK  114 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.06  E-value=16  Score=31.98  Aligned_cols=21  Identities=5%  Similarity=0.354  Sum_probs=10.2

Q ss_pred             HHHHHHHHhHhhHHHHHhhcC
Q psy1302           3 EMKQELDKKEESTEEIRGNYS   23 (225)
Q Consensus         3 el~qele~~Eee~~~le~~ys   23 (225)
                      ++++++++-.++..++...++
T Consensus        97 ~le~el~~l~~~l~~~~~~~~  117 (206)
T PRK10884         97 DLENQVKTLTDKLNNIDNTWN  117 (206)
T ss_pred             HHHHHHHHHHHHHHHHHhHHH
Confidence            345555555544444444433

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=85.82  E-value=2  Score=42.02  Aligned_cols=38  Identities=13%  Similarity=0.250  Sum_probs=17.2

Q ss_pred             HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q psy1302           7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYE   44 (225)
Q Consensus         7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~   44 (225)
                      .|.+++....++++++..|+.|++...++++++.++++
T Consensus        70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk  107 (475)
T PRK13729         70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE  107 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            34444444455555555555444444444444333333

>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal

Probab=85.33  E-value=8.5  Score=33.65  Aligned_cols=69  Identities=17%  Similarity=0.337  Sum_probs=54.3

Q ss_pred             hhHHHHHhhcCCHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          13 ESTEEIRGNYSTLE----QEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI   81 (225)
Q Consensus        13 ee~~~le~~yssLQ----eEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI   81 (225)
                      .+..++..+.++|.    +++..|-+.+.++..++-.+.--..+++.+++.|+--++.-|++|.++|-..+.+
T Consensus        82 ~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~~  154 (196)
T PF15272_consen   82 KQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRNNS  154 (196)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33444444554444    4557788899999999999999999999999999999999999999988765544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.94  E-value=11  Score=38.19  Aligned_cols=79  Identities=22%  Similarity=0.382  Sum_probs=57.6

Q ss_pred             HHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302           6 QELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENF   85 (225)
Q Consensus         6 qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~F   85 (225)
                      ..+...++....++..-++|+-+++.+.+.+.+|.+++..++.++. ...--.++-+.+...|..|+++|.=+.--++..
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L  500 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEEL  500 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566667777777777788888888888888888887777 444455667788889999999988777666543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.44  E-value=15  Score=30.66  Aligned_cols=54  Identities=17%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             HHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1302           8 LDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDR   61 (225)
Q Consensus         8 le~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ER   61 (225)
                      +.+-++...+....+..+++........++....+++.++..+.++..+|..=+
T Consensus        97 l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   97 LDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333344444455555555555555555554433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.38  E-value=17  Score=29.54  Aligned_cols=66  Identities=15%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDL   75 (225)
Q Consensus        10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~rel   75 (225)
                      .-++....++....+++......+++++.+..+++..+.|+.-+..-.+.-+..+.-.+|.-++|+
T Consensus        77 rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~  142 (151)
T PF11559_consen   77 RLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREI  142 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444555555555555555555555555555544444444444444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=84.21  E-value=17  Score=29.16  Aligned_cols=63  Identities=19%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302           3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE   65 (225)
Q Consensus         3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll   65 (225)
                      .++..+..+-....+.+.+|..=-.--..-.+.|..+...+..++.+|..+..+-..-+..|.
T Consensus        28 ~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~   90 (132)
T PF07926_consen   28 SLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE   90 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666677777775321111222455556666666666666666555555444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.17  E-value=12  Score=30.99  Aligned_cols=86  Identities=17%  Similarity=0.351  Sum_probs=40.8

Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHh
Q psy1302          18 IRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQR   97 (225)
Q Consensus        18 le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~   97 (225)
                      +...-..|++++......++.|...|..+.+....  ++-......|...+..+...|.-... =...|+++++++|.. 
T Consensus        77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~-  152 (169)
T PF07106_consen   77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEK-  152 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHH-
Confidence            33334444444444444444444444444433311  22334444555555555555554333 233478888888874 


Q ss_pred             ccccccCCccc
Q psy1302          98 LVYDEESSQWN  108 (225)
Q Consensus        98 a~wdEe~~~W~  108 (225)
                       .|..-...|.
T Consensus       153 -~~~~~~k~w~  162 (169)
T PF07106_consen  153 -EYKKWRKEWK  162 (169)
T ss_pred             -HHHHHHHHHH
Confidence             3443444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0250|consensus

Probab=84.06  E-value=7  Score=41.77  Aligned_cols=67  Identities=19%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy1302          13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDLKLRK   79 (225)
Q Consensus        13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~relkLk~   79 (225)
                      .+..+++.++..|+.||+.....+..|..+++.++.++.+.+++..   .++-++--.|+..+.+|+-..
T Consensus       394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  394 SELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK  463 (1074)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457788899999999999988999999999999999988888873   344455555555555555433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.04  E-value=23  Score=31.03  Aligned_cols=45  Identities=20%  Similarity=0.431  Sum_probs=21.1

Q ss_pred             HHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1302           5 KQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQD   49 (225)
Q Consensus         5 ~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~E   49 (225)
                      +.++...+.....+...-..++++++.+++++.++...+...+..
T Consensus        62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~  106 (302)
T PF10186_consen   62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR  106 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444555555555555555544444444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG1962|consensus

Probab=83.85  E-value=4.9  Score=35.62  Aligned_cols=54  Identities=28%  Similarity=0.512  Sum_probs=44.5

Q ss_pred             HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1302          12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLE   65 (225)
Q Consensus        12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll   65 (225)
                      +++...+.+.-..|++|++.+.++|+++..+..+++...++++.||.|=-+|..
T Consensus       150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~  203 (216)
T KOG1962|consen  150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS  203 (216)
T ss_pred             hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            445566677778899999999999999999999999999999999987666543

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=83.82  E-value=13  Score=29.33  Aligned_cols=62  Identities=19%  Similarity=0.339  Sum_probs=51.7

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          15 TEEIRGNYSTLEQEVQAKNKKLQKIYS------KYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK   76 (225)
Q Consensus        15 ~~~le~~yssLQeEve~KtkkLkKl~~------kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk   76 (225)
                      ..+..+.|...+.+.+....+++++..      ++..+..++...+..|+.-+.++...+..+.....
T Consensus        96 ~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~  163 (194)
T cd07307          96 IKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRK  163 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456677888888888888888888765      68899999999999999999999999888876655

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=83.60  E-value=25  Score=29.35  Aligned_cols=68  Identities=16%  Similarity=0.337  Sum_probs=57.9

Q ss_pred             HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy1302           3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDE   70 (225)
Q Consensus         3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~   70 (225)
                      .+..+++++..+...+..+|.+.-+-+....+|+.-+...+..++.+|.+.+.....=|+++...-.+
T Consensus        53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~  120 (177)
T PF13870_consen   53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE  120 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999888888999999999999999999999999988888877777654433

>PHA02562 46 endonuclease subunit; Provisional

Probab=83.27  E-value=18  Score=34.97  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCh
Q psy1302          67 SQDELLKDLKLRKLIIENFIPI   88 (225)
Q Consensus        67 tir~l~relkLk~lIId~FIP~   88 (225)
                      .++.+-+...++..|++.|+|.
T Consensus       407 ~i~~~~~~~g~~~~i~~~~l~~  428 (562)
T PHA02562        407 IVTDLLKDSGIKASIIKKYIPY  428 (562)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH
Confidence            3444444455666677777764

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.06  E-value=16  Score=29.99  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=7.5

Q ss_pred             HHHHhhcCCHHHHHHHHHHHH
Q psy1302          16 EEIRGNYSTLEQEVQAKNKKL   36 (225)
Q Consensus        16 ~~le~~yssLQeEve~KtkkL   36 (225)
                      ..+..+.+.|..+|+....+|
T Consensus        38 ~sL~~K~~~lE~eld~~~~~l   58 (143)
T PF12718_consen   38 TSLQKKNQQLEEELDKLEEQL   58 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=82.91  E-value=29  Score=33.28  Aligned_cols=75  Identities=12%  Similarity=0.276  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhccccccCCccccC
Q psy1302          35 KLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLVYDEESSQWNIV  110 (225)
Q Consensus        35 kLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId~FIP~ee~~kI~~~a~wdEe~~~W~l~  110 (225)
                      .++.+..++..++.++..++.+.. .--+....++.|.|+......+.+.|.-.-+..++.....=......|.+=
T Consensus       325 ~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~vi  399 (498)
T TIGR03007       325 EIASLEARVAELTARIERLESLLR-TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRII  399 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEEe
Confidence            333334444444444444444433 233567788999999999999999998877777776554433445667773

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR00606 rad50 rad50

Probab=82.82  E-value=12  Score=40.86  Aligned_cols=82  Identities=18%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI   81 (225)
Q Consensus         2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI   81 (225)
                      .+++.++...+.+...+...+.+++.+.+.+.++|+.|..++..+..+-..+..... .|.++...+.++..++.-...-
T Consensus       825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~  903 (1311)
T TIGR00606       825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIRE  903 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888888888888888888999888888888887777777777777777665 7788888888887777655544


Q ss_pred             HHh
Q psy1302          82 IEN   84 (225)
Q Consensus        82 Id~   84 (225)
                      |..
T Consensus       904 ~~~  906 (1311)
T TIGR00606       904 IKD  906 (1311)
T ss_pred             HHH
Confidence            433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.77  E-value=16  Score=32.88  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=43.2

Q ss_pred             HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHH
Q psy1302           4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK--QDIQDIMDEFNR   59 (225)
Q Consensus         4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k--~Ei~Dlq~E~~~   59 (225)
                      +...+...+.+..+++..++-++.++...++++++...++.+++  .|+.+|+.|++.
T Consensus        43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~  100 (239)
T COG1579          43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI  100 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            44566777778888888888888888888888888888887665  567777766653

>PRK14143 heat shock protein GrpE; Provisional

Probab=82.76  E-value=9.4  Score=34.20  Aligned_cols=44  Identities=25%  Similarity=0.502  Sum_probs=30.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1302          23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQ   66 (225)
Q Consensus        23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~   66 (225)
                      ..|+++++...++++.++.+|.-+.+|+.....-..+|++++..
T Consensus        70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~  113 (238)
T PRK14143         70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL  113 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666666666677777777777777777777777777766543

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=82.73  E-value=16  Score=26.73  Aligned_cols=67  Identities=18%  Similarity=0.366  Sum_probs=41.2

Q ss_pred             HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLK   73 (225)
Q Consensus         3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~r   73 (225)
                      .+...|.++++....+.+.=..|.-..-..+..+|||..+.+.....|.++...    .+++...+..|..
T Consensus         2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~----~~~~e~~~~~l~~   68 (74)
T PF12329_consen    2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKK----LEELEKELESLEE   68 (74)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            466788888888777665555554444445666777777777777777766643    3344444444443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices

Probab=82.71  E-value=16  Score=29.73  Aligned_cols=65  Identities=25%  Similarity=0.462  Sum_probs=42.4

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302          21 NYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---------DEFNRDRRDLEQSQDELLKDLKLRKLIIENF   85 (225)
Q Consensus        21 ~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---------~E~~~ERedll~tir~l~relkLk~lIId~F   85 (225)
                      .|...++..+...+.|.++...+.++..-+..+.         ++|..=--.+-+-...|+++++=+..||++|
T Consensus        46 r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~f  119 (126)
T PF09403_consen   46 RYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNF  119 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555566565555555555444443         4566666677777888888888888899887

; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.47  E-value=13  Score=34.00  Aligned_cols=58  Identities=16%  Similarity=0.362  Sum_probs=22.0

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1302          15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD---EFNRDRRDLEQSQDELL   72 (225)
Q Consensus        15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~---E~~~ERedll~tir~l~   72 (225)
                      .-+++..-.++|.+|+.+-.++.++..+.+.++.+|..++.   +++.+..++.++|++..
T Consensus        40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333332   12333444444444433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=82.29  E-value=8.5  Score=35.63  Aligned_cols=41  Identities=20%  Similarity=0.404  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302          23 STLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD   63 (225)
Q Consensus        23 ssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed   63 (225)
                      ++|.-+|+..+.+|..+..-|-+++.|+.+...+|++.+..
T Consensus       108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~  148 (302)
T PF09738_consen  108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA  148 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888888888888888888888888888888888777664

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.61  E-value=21  Score=31.15  Aligned_cols=26  Identities=4%  Similarity=0.226  Sum_probs=14.6

Q ss_pred             HHHHHHhHhhHHHHHhhcCCHHHHHH
Q psy1302           5 KQELDKKEESTEEIRGNYSTLEQEVQ   30 (225)
Q Consensus         5 ~qele~~Eee~~~le~~yssLQeEve   30 (225)
                      ...+.+.+.+..+++.+.+++.++.+
T Consensus        92 ~~rlp~le~el~~l~~~l~~~~~~~~  117 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNIDNTWN  117 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            34455555666666666666655543

>PHA02562 46 endonuclease subunit; Provisional

Probab=81.29  E-value=8  Score=37.38  Aligned_cols=75  Identities=17%  Similarity=0.294  Sum_probs=37.8

Q ss_pred             hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN----------RDRRDLEQSQDELLKDLKLRKLIIE   83 (225)
Q Consensus        14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~----------~ERedll~tir~l~relkLk~lIId   83 (225)
                      ....+..+++.+.+++...+..+..+..+...++.+|..++.++.          .+..++...+.++.++......|-+
T Consensus       331 ~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~  410 (562)
T PHA02562        331 EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTD  410 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444555544443322          2444556666777777777666655


Q ss_pred             hcCCh
Q psy1302          84 NFIPI   88 (225)
Q Consensus        84 ~FIP~   88 (225)
                      .|--+
T Consensus       411 ~~~~~  415 (562)
T PHA02562        411 LLKDS  415 (562)
T ss_pred             HHHhh
Confidence            54433

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=81.20  E-value=15  Score=29.54  Aligned_cols=69  Identities=25%  Similarity=0.419  Sum_probs=49.1

Q ss_pred             hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          13 ESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVK-----QDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLI   81 (225)
Q Consensus        13 ee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k-----~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lI   81 (225)
                      .....+++.+...+.+++.+.+.|+++..+|+...     .+....+.+++....+|......+.+++.....-
T Consensus        36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~  109 (158)
T PF03938_consen   36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQE  109 (158)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777778888888888888888888777642     4566677777777777777777777776665544

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.92  E-value=35  Score=29.83  Aligned_cols=9  Identities=33%  Similarity=0.383  Sum_probs=4.3

Q ss_pred             CCccccCCC
Q psy1302         104 SSQWNIVPE  112 (225)
Q Consensus       104 ~~~W~l~~~  112 (225)
                      ...|.|-++
T Consensus       173 ~~~~~I~~~  181 (302)
T PF10186_consen  173 SSEYTICGL  181 (302)
T ss_pred             CCCeeecCc
Confidence            445555443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.40  E-value=20  Score=26.27  Aligned_cols=48  Identities=10%  Similarity=0.242  Sum_probs=27.7

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1302          16 EEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD   63 (225)
Q Consensus        16 ~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed   63 (225)
                      ..++.+|+++-+.+.....++..|..+..+++.+...|..+.++-+++
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e   54 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE   54 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666666666666655555544433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK14160 heat shock protein GrpE; Provisional

Probab=80.25  E-value=18  Score=31.88  Aligned_cols=17  Identities=18%  Similarity=0.620  Sum_probs=9.9

Q ss_pred             HHHHhcCCh-HHHHHHHH
Q psy1302          80 LIIENFIPI-EELKRLEQ   96 (225)
Q Consensus        80 lIId~FIP~-ee~~kI~~   96 (225)
                      .++..|+|. +.+++...
T Consensus       112 ~~~~~LLpVlDnLerAl~  129 (211)
T PRK14160        112 DVLKELLPVLDNLERAAA  129 (211)
T ss_pred             HHHHHHhhHHhHHHHHHh
Confidence            445666664 56666654

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=80.14  E-value=20  Score=38.63  Aligned_cols=82  Identities=28%  Similarity=0.484  Sum_probs=57.5

Q ss_pred             HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD---EFNRDRRDLEQSQDELLKDLKLRKL   80 (225)
Q Consensus         4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~---E~~~ERedll~tir~l~relkLk~l   80 (225)
                      +.++++..+++..+++++..++..++...+.++..+...+..++.++.++..   .+..++.++...++++...+.-...
T Consensus       826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~  905 (1163)
T COG1196         826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE  905 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567777777777888888888888887777777777777777666655554   4556667777777777776665555


Q ss_pred             HHHhc
Q psy1302          81 IIENF   85 (225)
Q Consensus        81 IId~F   85 (225)
                      -+..+
T Consensus       906 ~~~~~  910 (1163)
T COG1196         906 EIEKL  910 (1163)
T ss_pred             HHHHH
Confidence            44444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 40/245 (16%), Positives = 84/245 (34%), Gaps = 53/245 (21%)

Query: 4   MKQELDKKEESTEEIRGNYSTL---EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRD 60
           ++  L+  E    E R  +  L             L  I+  ++ +K D+  ++++ ++ 
Sbjct: 359 IESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVMVVVNKLHK- 413

Query: 61  RRDLEQSQDEL---LKDLKLRKLIIENFIPIEELKRLEQRLV--YD--EESSQWNIVPET 113
              +E+   E    +  + L        + +E    L + +V  Y+  +     +++P  
Sbjct: 414 YSLVEKQPKESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 114 NP----FYIQKRLVASPQLRRPTTLKA--------REKISQCPTDAGKTRFIGENILTLN 161
                  +I   L       R T  +          +KI    T    +  I   +  L 
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 162 F---DICPNNCKNYQG---------PKVAPSIL-----SVLQAALQDEADIDVDVKSTAS 204
           F    IC  N   Y+          PK+  +++      +L+ AL  E +    +   A 
Sbjct: 529 FYKPYICD-NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE---AIFEEAH 584

Query: 205 KKIHR 209
           K++ R
Sbjct: 585 KQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 54/212 (25%)

Query: 20  GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK 79
            N ++ E  +    + LQK+  +   +  +     D  +  +  +   Q EL + LK + 
Sbjct: 190 KNCNSPETVL----EMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 80  -----LIIENFIPIEELKRLEQRLVYDEESSQWNIVPETNPFYIQ-KRLVASPQLRRPTT 133
                L++ N              V + +          N F +  K L+        TT
Sbjct: 243 YENCLLVLLN--------------VQNAK-----AW---NAFNLSCKILL--------TT 272

Query: 134 ----------LKAREKISQCPTDAGKTRFIGENILTLNFDICPNNCKNYQGPKVAPSILS 183
                           IS        T    +++L    D  P +    +     P  LS
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLS 331

Query: 184 VLQAALQDEADIDVDVKSTASKKIHRANKTPL 215
           ++  +++D      + K     K+    ++ L
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 3    EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRR 62
            +   +L K+ +  EE   + +T   E + K K L K+ +K+E +  +++  + +  + R+
Sbjct: 997  DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056

Query: 63   DLEQSQDELLKDLKLRKLIIENFIPIEELKRLEQRLV-YDEESSQWN 108
            +LE+ + +L  +       I       ++  L+ +L   +EE     
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAEL--QAQIAELKAQLAKKEEELQAAL 1101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	93.37
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	93.37
3etw_A	119	Adhesin A; antiparallel helix-loop-helix, leucine	92.74
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	92.69
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.77
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.21
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	89.8
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.52
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.94
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	88.09
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.03
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.14
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	86.14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	84.56
3mtu_E	77	Head morphogenesis protein, tropomyosin alpha-1 C;	83.66
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.6
3htk_A	60	Structural maintenance of chromosomes protein 5; S	82.86
3bas_A	89	Myosin heavy chain, striated muscle/general contro	82.73
3bas_A	89	Myosin heavy chain, striated muscle/general contro	81.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.23
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	81.17
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	80.52

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=93.37  E-value=1.7  Score=33.73  Aligned_cols=72  Identities=10%  Similarity=0.287  Sum_probs=61.6

Q ss_pred             hHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           2 IEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK   76 (225)
Q Consensus         2 ~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk   76 (225)
                      ++++.+|.+..+++.+++..   +++-.+.-.+++-.|...++..++.+.+|+..|..=+.+..+.+..|+..-+
T Consensus        16 ~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re   87 (112)
T 1x79_B           16 RQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSRE   87 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888888887   7777777788889999999999999999999999999999888888876543

>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A

Probab=92.74  E-value=0.86  Score=35.68  Aligned_cols=66  Identities=17%  Similarity=0.326  Sum_probs=56.4

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1302          20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---------DEFNRDRRDLEQSQDELLKDLKLRKLIIENF   85 (225)
Q Consensus        20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---------~E~~~ERedll~tir~l~relkLk~lIId~F   85 (225)
                      ..|+-.+++.+.-.++|-+....+.++..-+..++         .+|..--..|.....+|+.+++=...|||+|
T Consensus        27 qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnF  101 (119)
T 3etw_A           27 ARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDF  101 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888888888888888777777777777665         6788888999999999999999999999999

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=90.77  E-value=3  Score=29.89  Aligned_cols=72  Identities=14%  Similarity=0.259  Sum_probs=51.6

Q ss_pred             ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELL   72 (225)
Q Consensus         1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~   72 (225)
                      |..++.+|..-..+.....+.+..++..+....++..++-..+.+++.-|.-++.++.+=-+.|.+....|.
T Consensus         1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A            1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777777777777777777777777777777777777777777776666666666665554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.21  E-value=1.8  Score=44.66  Aligned_cols=65  Identities=15%  Similarity=0.165  Sum_probs=44.3

Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE   83 (225)
Q Consensus        19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId   83 (225)
                      +....+++.+|..+++++.++...++.+..|.+++++.++.-.++|.+.+..|.++......=++
T Consensus       976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A          976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555556666666666777777777777777777777778888888888888765555443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=89.80  E-value=4.5  Score=29.50  Aligned_cols=79  Identities=20%  Similarity=0.336  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy1302           1 MIEMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMD---EFNRDRRDLEQSQDELLKDLKL   77 (225)
Q Consensus         1 ~~el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~---E~~~ERedll~tir~l~relkL   77 (225)
                      |++|++++...--+...++-.-.+++..++.-+.|...-..+-+++..+|.-+..   +-.--|-||+..+..|..||.+
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999888888888889999999999999999888888888888887763   5556889999999999999887


Q ss_pred             HH
Q psy1302          78 RK   79 (225)
Q Consensus        78 k~   79 (225)
                      ..
T Consensus        82 Lk   83 (86)
T 3swk_A           82 LK   83 (86)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.52  E-value=1.1  Score=35.60  Aligned_cols=40  Identities=8%  Similarity=0.111  Sum_probs=22.1

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302          15 TEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM   54 (225)
Q Consensus        15 ~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq   54 (225)
                      ...+.+.|..|.++++.+.+.+..|...+.+++.++..+.
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~  109 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA  109 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666666655555555555555555554444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.94  E-value=6.6  Score=32.90  Aligned_cols=79  Identities=13%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             HHHHHHHhHhhHHHHHhhcCCH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           4 MKQELDKKEESTEEIRGNYSTL----EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRK   79 (225)
Q Consensus         4 l~qele~~Eee~~~le~~yssL----QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~   79 (225)
                      +++++..-+.+..+..+.-..|    ..+++...++++.|..++..++.|+......|..-..+...+|..|.+++.-..
T Consensus        22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~  101 (189)
T 2v71_A           22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR  101 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433333    334556667777777777777777777776666666666666666666655444


Q ss_pred             HHH
Q psy1302          80 LII   82 (225)
Q Consensus        80 lII   82 (225)
                      .+.
T Consensus       102 ~~~  104 (189)
T 2v71_A          102 AIK  104 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=88.09  E-value=3.7  Score=35.12  Aligned_cols=89  Identities=13%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLKLRKLIIE   83 (225)
Q Consensus         4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relkLk~lIId   83 (225)
                      |..+++..+.....+++.-..+-++++.+...+..+...+..++.++...+.++.....++...+..+..+    ..-+.
T Consensus        95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~----r~~l~  170 (256)
T 3na7_A           95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK----KEDLV  170 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            44555555555555555555555555555555555555555555555555555555554444444444322    22345


Q ss_pred             hcCChHH---HHHHHH
Q psy1302          84 NFIPIEE---LKRLEQ   96 (225)
Q Consensus        84 ~FIP~ee---~~kI~~   96 (225)
                      .-||++-   .++|.+
T Consensus       171 ~~i~~~lL~~Yerir~  186 (256)
T 3na7_A          171 EKTEPKIYSFYERIRR  186 (256)
T ss_dssp             HTSCHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHH
Confidence            5678864   455554

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.03  E-value=3.3  Score=32.80  Aligned_cols=7  Identities=14%  Similarity=0.212  Sum_probs=2.5

Q ss_pred             HHHHHHh
Q psy1302          43 YEEVKQD   49 (225)
Q Consensus        43 l~~~k~E   49 (225)
                      +.+++.+
T Consensus       105 ~e~~~~e  111 (138)
T 3hnw_A          105 AESSAKE  111 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.14  E-value=7.7  Score=28.93  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---DEFNRDRRDLEQSQDELLKDLKLR   78 (225)
Q Consensus        20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---~E~~~ERedll~tir~l~relkLk   78 (225)
                      ....-+.+||...++|+.-+-..+..++..+.+.+   .+-..-+.+.+..+-.|+|.+.|.
T Consensus        37 ~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           37 ERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444443333333   222333445555777777777764

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=86.14  E-value=8.6  Score=28.50  Aligned_cols=60  Identities=20%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          19 RGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM---DEFNRDRRDLEQSQDELLKDLKLR   78 (225)
Q Consensus        19 e~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq---~E~~~ERedll~tir~l~relkLk   78 (225)
                      +....-+.+||...++|++-+...+..+...+.+.+   ++...-+.+-+..+..|+|.|.|.
T Consensus        36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll   98 (101)
T 3u59_A           36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444545555444444444444444444   223334555666777888877764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=84.56  E-value=6  Score=40.88  Aligned_cols=47  Identities=15%  Similarity=0.231  Sum_probs=22.5

Q ss_pred             HhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy1302          12 EESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN   58 (225)
Q Consensus        12 Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~   58 (225)
                      +.+...++.+-.+|++|++...+.+.++...++.++..+..++++-+
T Consensus       976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A          976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555555555544444444444444444333

>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}

Probab=83.66  E-value=8.2  Score=27.93  Aligned_cols=63  Identities=14%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             hHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          14 STEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK   76 (225)
Q Consensus        14 e~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk   76 (225)
                      ...++-.+..+-.=+-...|.-|..|...|-.+..+|.||.++...+++......+.|.+-+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~   72 (77)
T 3mtu_E           10 EHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQTLL   72 (77)
T ss_dssp             HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344555555554444556788899999999999999999999999999999999988876554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.60  E-value=5.1  Score=34.21  Aligned_cols=35  Identities=11%  Similarity=0.206  Sum_probs=19.7

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy1302          20 GNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIM   54 (225)
Q Consensus        20 ~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq   54 (225)
                      +.|+.|+.|++...+++..+-..+..+..++..++
T Consensus        90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~  124 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKS  124 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777776666666555555554444443333

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=82.86  E-value=4.7  Score=26.82  Aligned_cols=50  Identities=16%  Similarity=0.308  Sum_probs=33.1

Q ss_pred             HHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302           7 ELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE   56 (225)
Q Consensus         7 ele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E   56 (225)
                      ++...+....+..++|+.+..+.+.-+.+++++...+..+..+|..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q   55 (60)
T 3htk_A            6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ   55 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555566666777777777777777777777777777777766543

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=82.73  E-value=7.2  Score=28.43  Aligned_cols=47  Identities=9%  Similarity=0.230  Sum_probs=34.3

Q ss_pred             HhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy1302          10 KKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDE   56 (225)
Q Consensus        10 ~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E   56 (225)
                      ..++++..+++.+..+++.++.-.+..+.|-.++..+.+|..||+..
T Consensus        11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q   57 (89)
T 3bas_A           11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS   57 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777777777777788888888888888766

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=81.33  E-value=13  Score=26.96  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=16.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302          47 KQDIQDIMDEFNRDRRDLEQSQDELLKD   74 (225)
Q Consensus        47 k~Ei~Dlq~E~~~ERedll~tir~l~re   74 (225)
                      -+++.+........+.+|...+.+++-.
T Consensus        58 l~eaEe~~~~L~~~K~eLE~~l~el~~r   85 (89)
T 3bas_A           58 MKQLEDKVEELLSKNYHLENEVARLKKL   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556666666666666666666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.23  E-value=11  Score=35.05  Aligned_cols=50  Identities=8%  Similarity=0.057  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy1302          26 EQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFN---RDRRDLEQSQDELLKDL   75 (225)
Q Consensus        26 QeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~---~ERedll~tir~l~rel   75 (225)
                      .+++.....+..++-.+++..++++++.+++++   .+++.++..+++..+.+
T Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~  560 (597)
T 3oja_B          508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ  560 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence            333333344444555555556666655555555   45555544444443333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=81.17  E-value=16  Score=28.09  Aligned_cols=72  Identities=17%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             HHHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy1302           3 EMKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSKYEEVKQDIQDIMDEFNRDRRD---LEQSQDELLKDLKLR   78 (225)
Q Consensus         3 el~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~kl~~~k~Ei~Dlq~E~~~ERed---ll~tir~l~relkLk   78 (225)
                      .|..+|...|+........+..|++|+..+.+-+    ..+.-+++.+.=-...|..||.+   +-+.+.+|..+|...
T Consensus        28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L  102 (110)
T 2v4h_A           28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL  102 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence            4667777777777777777777777666644433    34555666666666677766543   445555555555433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=80.52  E-value=18  Score=28.10  Aligned_cols=69  Identities=17%  Similarity=0.280  Sum_probs=43.6

Q ss_pred             HHHHHHHhHhhHHHHHhhcCCHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1302           4 MKQELDKKEESTEEIRGNYSTLEQEVQAKNKKLQKIYSK----YEEVKQDIQDIMDEFNRDRRDLEQSQDELLKDLK   76 (225)
Q Consensus         4 l~qele~~Eee~~~le~~yssLQeEve~KtkkLkKl~~k----l~~~k~Ei~Dlq~E~~~ERedll~tir~l~relk   76 (225)
                      |+++|-...+...+.+....+--+-|.....-|++..+.    ++.++.||.+|...    -++.+..+..|.++..
T Consensus        30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~----Lq~a~ae~erlr~~~~  102 (121)
T 3mq7_A           30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHK----LQDASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhch
Confidence            567777777777777766666666666666666655544    66667777776653    3355555556666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00