Psyllid ID: psy13046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
FPQIWVLAIANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Secondary Structure (PSIPRED)
cccEEEEEccccccccccccEEHHHccccHHHHHHHHHcccccccccEEEcccccEEEEcccccEEEEccccccHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEcccccEEEEEEccccEEcccccEEEEEEEcccccccccccHHHHcccccccccccccccEEEcccccEEEEcccccEEEEccccccHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccEEEEccccccHHcHHHHHHHHHccccEEccccEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEHHHccccccHHHHHHHHHHHHHccccHHHHcEEEEEEcccccEEEEccccccccHHHHHccccccEEEEEEcccEcccEEEEEccccEEEEEEEEEccccccccccccEEEEEEEEEcccccHHHHHHHHcccccEEccccEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
FPQIWVLAIANQHSSRQKKAIHFRHFDSFLLFVELCLLLfpflsrdqfvlredgygqVVGRIKDMIIrggeniypkEIEEFIQTHPNVLEayaygvpdermgeeVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVvidpsltihtvwpgqsyfpcccgklrihpflevVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMkskrglparvkapdrkkcsqrpryqfvlredgygqvVGRIKDMIIrggeniypkEIEEFIQTHPNVLEayaygvpdermgeeVGISIKLKENAKLNADDIRTFCKGKVSKF
Flexible Loop (DISEMBL)
FPQIWVLAIANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLredgygqvvgriKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIklkenaklnaddirtfckgkvkrkiSCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKskrglparvkapdrkkcsqrpryqfvlredgygqvvGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIklkenaklnaddirtfckgkvskf
Low Complexity Region (SEG)
FPQIWVLAIANQHSSRQKKAIHFRHFDSfllfvelclllfpflSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKvkrkiscifiiivriscECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Disordered region (IsUnstruct)
***IWVLAIANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV*****************************RYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFC*******
Disordered Region (DISOPRED)
*PQIWVLAIANQH***QKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Disordered Region (DISEMBL)
FPQIWVLAIANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQ***********************QRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Disordered Region (DISPRO)
FPQIWVLAIANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FPQIWVLAIANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
O31826	549	Putative acyl-CoA synthet	yes	N/A	0.249	0.165	0.505	2e-22
Q4R4Z9	618	Acyl-CoA synthetase famil	N/A	N/A	0.232	0.137	0.529	3e-21
Q0P4F7	606	Acyl-CoA synthetase famil	yes	N/A	0.216	0.130	0.547	5e-21
Q96CM8	615	Acyl-CoA synthetase famil	yes	N/A	0.232	0.138	0.529	5e-21
Q5R9G9	615	Acyl-CoA synthetase famil	yes	N/A	0.232	0.138	0.529	5e-21
Q8VCW8	615	Acyl-CoA synthetase famil	yes	N/A	0.232	0.138	0.552	6e-21
Q499N5	615	Acyl-CoA synthetase famil	yes	N/A	0.230	0.136	0.535	4e-20
Q17QJ1	615	Acyl-CoA synthetase famil	yes	N/A	0.232	0.138	0.564	1e-19
Q9SMT7	514	4-coumarate--CoA ligase-l	yes	N/A	0.221	0.157	0.444	1e-15
Q0K844	509	Probable sulfoacetate--Co	no	N/A	0.221	0.159	0.419	9e-13

>sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 64/91 (70%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
             + D  V+ EDGY ++ GR+KDM+IRGGENIYP+EIEEF+  HP VL+    GVPD + 
Sbjct: 419 LFTGDLAVMDEDGYCRITGRLKDMLIRGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKF 478

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKVKR 132
           GEE    IKLK+   ++ D+++ +CKGK+ R
Sbjct: 479 GEEAAAWIKLKDGKSVSPDELKAYCKGKIAR 509

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 61/85 (71%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+   
Sbjct: 499 TMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICAC 558

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I+LK+  +  A++++ FCKGK+S F
Sbjct: 559 IRLKDGEETTAEEMKAFCKGKISHF 583

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 62/84 (73%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L +  Y ++ GRIKD+IIRGGENIYP EIE+F+ THP +LEA   GV DERMGEEV   I
Sbjct: 488 LDQFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACI 547

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
           +LKE  +   ++I+ +CKGK++ +
Sbjct: 548 RLKEGQECTVEEIKAYCKGKIAHY 571

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 60/85 (70%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+   
Sbjct: 496 TMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICAC 555

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I+LK+  +   ++I+ FCKGK+S F
Sbjct: 556 IRLKDGEETTVEEIKAFCKGKISHF 580

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 60/85 (70%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+   
Sbjct: 496 TMNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICAC 555

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I+LK+  +   ++I+ FCKGK+S F
Sbjct: 556 IRLKDGEETTVEEIKAFCKGKISHF 580

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 60/85 (70%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           ++ E G+ ++VGR KDMIIRGGENIYP E+E+F   HP V EA   GV DERMGEE+   
Sbjct: 496 LMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICAC 555

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I+LK      A++I+ FCKGK+S F
Sbjct: 556 IRLKSGETTTAEEIKAFCKGKISHF 580

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 58/84 (69%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           + E G+ ++VGR KDMIIRGGENIYP E+E+F   HP V EA   GV D+RMGEE+   I
Sbjct: 497 MDEQGFCRIVGRSKDMIIRGGENIYPAELEDFFHKHPQVQEAQVVGVKDDRMGEEICACI 556

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
           +LK       ++I+ FCKGK+S F
Sbjct: 557 RLKSGETTTEEEIKAFCKGKISHF 580

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q17QJ1|ACSF2_BOVIN Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 62/85 (72%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+   
Sbjct: 496 MMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICAC 555

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I+LKE  K  A++I+ FCKGK+S F
Sbjct: 556 IRLKEGEKTTAEEIKAFCKGKISHF 580

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SMT7|4CLLA_ARATH 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 55/81 (67%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           DGY  +VGRIK++I RGGE I P E++  + THP+V +  A+GVPDE+ GEE+  ++  +
Sbjct: 401 DGYLHLVGRIKELINRGGEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPR 460

Query: 345 ENAKLNADDIRTFCKGKVSKF 365
           E   +  +DI+ FCK  ++ F
Sbjct: 461 EGTTVTEEDIKAFCKKNLAAF 481

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q0K844|SAUT_CUPNH Probable sulfoacetate--CoA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sauT PE=2 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 53/81 (65%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           DGY  + GR K++II+GGENI P+EI+E +  HP VLEA A GVPD   G+E+   + ++
Sbjct: 400 DGYFYISGRAKELIIKGGENIAPREIDEALLRHPGVLEAAAVGVPDPAYGQEIVAYVVMR 459

Query: 345 ENAKLNADDIRTFCKGKVSKF 365
           E A+ +   +R  C  ++ ++
Sbjct: 460 EAARCDDAALRAHCLRELGRY 480

Catalyzes the CoA- and ATP-dependent conversion of sulfoacetate to sulfoacetyl-CoA and AMP.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
189240709	575	PREDICTED: similar to CG12512 CG12512-PA	0.243	0.154	0.595	1e-25
260806739	551	hypothetical protein BRAFLDRAFT_164673 [	0.276	0.183	0.586	5e-25
157106380	382	AMP dependent coa ligase [Aedes aegypti]	0.408	0.390	0.443	7e-25
157130154	1017	AMP dependent coa ligase [Aedes aegypti]	0.408	0.146	0.450	2e-24
170028425	853	acetyl-coenzyme A synthetase [Culex quin	0.238	0.101	0.568	3e-24
345488226	592	PREDICTED: acyl-CoA synthetase family me	0.238	0.146	0.586	3e-24
242010698	582	firefly luciferase, putative [Pediculus	0.238	0.149	0.586	1e-23
157106378	586	AMP dependent coa ligase [Aedes aegypti]	0.238	0.148	0.568	1e-23
170028427	582	AMP dependent coa ligase [Culex quinquef	0.238	0.149	0.590	2e-23
373856103	547	AMP-dependent synthetase and ligase [Bac	0.232	0.155	0.588	4e-23

>gi|189240709|ref|XP_001813711.1| PREDICTED: similar to CG12512 CG12512-PA [Tribolium castaneum] gi|270013541|gb|EFA09989.1| hypothetical protein TcasGA2_TC012154 [Tribolium castaneum]

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 72/89 (80%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
            ++ DQF+L EDGYG+VVGR+K+MIIRGGENI+PKEIEEF+ +HPN+LE +  G+P ER+
Sbjct: 453 LMTGDQFILEEDGYGKVVGRLKEMIIRGGENIFPKEIEEFLNSHPNILETHVIGLPHERL 512

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
           GEEV   I++K   K+  DD+ +FCKGK+
Sbjct: 513 GEEVCACIRVKPGTKVTFDDMVSFCKGKM 541

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260806739|ref|XP_002598241.1| hypothetical protein BRAFLDRAFT_164673 [Branchiostoma floridae] gi|229283513|gb|EEN54253.1| hypothetical protein BRAFLDRAFT_164673 [Branchiostoma floridae]

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 73/104 (70%), Gaps = 3/104 (2%)

Query: 262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL 321
           A V  PDR   +       VL E+GYGQ+VGRIKDMIIRGGENIYP+EIEEF+ THP + 
Sbjct: 428 AEVIGPDRWYMTGDIA---VLDEEGYGQIVGRIKDMIIRGGENIYPREIEEFLYTHPKIE 484

Query: 322 EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 365
           +    GVPDERMGEEV   IKL+E   +  D+IR FCKG++S F
Sbjct: 485 DVQVIGVPDERMGEEVCAWIKLREGENMEEDEIRAFCKGEISHF 528

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157106380|ref|XP_001649297.1| AMP dependent coa ligase [Aedes aegypti] gi|108868853|gb|EAT33078.1| AAEL014663-PA [Aedes aegypti]

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/151 (44%), Positives = 92/151 (60%), Gaps = 2/151 (1%)

Query: 216 QVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCSQR 275
           + V HI +H   ++V    N+V +       V S  M M    G   + K         R
Sbjct: 196 ETVGHIMDHFEAKIVDGQGNTVPFGTPGELWVRSSGM-MLGYWGDEKKTKETLDADGWLR 254

Query: 276 PRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
              QFVLREDGYG++VGRIK++IIRGGENI+P+EIE+++ THP VLE +  GVPD RMGE
Sbjct: 255 TGDQFVLREDGYGKIVGRIKEIIIRGGENIFPREIEDYLNTHPKVLETHCVGVPDSRMGE 314

Query: 336 EVGISIKLKENAK-LNADDIRTFCKGKVSKF 365
           E+   ++LKE  + L  D+I+ FCKG ++ F
Sbjct: 315 EICAFVRLKEEGQMLTFDEIKDFCKGNLAHF 345

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130154|ref|XP_001661845.1| AMP dependent coa ligase [Aedes aegypti] gi|108872001|gb|EAT36226.1| AAEL011676-PA [Aedes aegypti]

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 93/151 (61%), Gaps = 2/151 (1%)

Query: 216 QVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARVKAPDRKKCSQR 275
           + V HI +H   ++V    N+V +       V S  M M    G   + K         R
Sbjct: 831 ETVGHIMDHFEAKVVDGQGNTVPFGTPGELWVRSSGM-MLGYWGDEKKTKETLDVDGWLR 889

Query: 276 PRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
              QFVLREDGYG++VGRIK++IIRGGENI+P+EIE+++ THP VLE +  GVPD RMGE
Sbjct: 890 TGDQFVLREDGYGKIVGRIKEIIIRGGENIFPREIEDYLNTHPKVLETHCVGVPDSRMGE 949

Query: 336 EVGISIKLKENAK-LNADDIRTFCKGKVSKF 365
           E+   ++LKE  + L  D+I+ FCKGK++ F
Sbjct: 950 EICAFVRLKEEWQMLTFDEIKDFCKGKLAHF 980

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028425|ref|XP_001842096.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus] gi|167874251|gb|EDS37634.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus]

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 75/88 (85%), Gaps = 1/88 (1%)

Query: 279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338
           QFVLREDGYG++VGRIK+M+IRGGENIYPKEIE+F+ +HP +LE +  GVPDERMGEE+ 
Sbjct: 732 QFVLREDGYGKIVGRIKEMVIRGGENIYPKEIEDFLNSHPKILETHCVGVPDERMGEEIC 791

Query: 339 ISIKLKENAK-LNADDIRTFCKGKVSKF 365
             ++L+++++ ++  +++ FC+GK++ F
Sbjct: 792 AFVRLRDSSQTMDRAELKDFCQGKIAHF 819

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488226|ref|XP_001605955.2| PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like [Nasonia vitripennis]

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 72/87 (82%)

Query: 279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338
           Q+VLREDGYG +VGR+KDMIIRGGENIYPKEIE F+++HP++LE +A+GV D+  GEE+ 
Sbjct: 465 QYVLREDGYGIIVGRLKDMIIRGGENIYPKEIEHFLESHPSILEVHAFGVHDDVYGEEMC 524

Query: 339 ISIKLKENAKLNADDIRTFCKGKVSKF 365
             ++L+  AK++ DD+  + KGK++KF
Sbjct: 525 ACVRLRSGAKISVDDVVNYAKGKIAKF 551

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010698|ref|XP_002426097.1| firefly luciferase, putative [Pediculus humanus corporis] gi|212510130|gb|EEB13359.1| firefly luciferase, putative [Pediculus humanus corporis]

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 70/87 (80%)

Query: 279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338
           QFVL E+GYG++VGR KD+IIRGGENIYP +IEEF+ THP++LEA   G+PD R+GE+V 
Sbjct: 458 QFVLLENGYGKIVGRKKDLIIRGGENIYPADIEEFLSTHPDILEAQVVGLPDPRLGEQVC 517

Query: 339 ISIKLKENAKLNADDIRTFCKGKVSKF 365
             I+LK N+ L  ++++ FCKGK++ F
Sbjct: 518 ACIRLKPNSFLTEEEVKEFCKGKIADF 544

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106378|ref|XP_001649296.1| AMP dependent coa ligase [Aedes aegypti] gi|108868852|gb|EAT33077.1| AAEL014664-PA [Aedes aegypti]

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 73/88 (82%), Gaps = 1/88 (1%)

Query: 279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338
           QF LREDGYG++VGR+K+M+IRGGENIYPKE+E+F+ THP +LE +  GVPDERMGEE+ 
Sbjct: 460 QFQLREDGYGKIVGRMKEMVIRGGENIYPKELEDFLCTHPKILETHCIGVPDERMGEEIC 519

Query: 339 ISIKLKENA-KLNADDIRTFCKGKVSKF 365
             ++L++++  L+  +++ FCKGK++ F
Sbjct: 520 AYVRLQDSSMSLDHAEMKAFCKGKIAHF 547

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028427|ref|XP_001842097.1| AMP dependent coa ligase [Culex quinquefasciatus] gi|167874252|gb|EDS37635.1| AMP dependent coa ligase [Culex quinquefasciatus]

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 69/88 (78%), Gaps = 1/88 (1%)

Query: 279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338
           QF LR DGYG++VGR+K+M+IRGGENIYPKE+E+F+ THP +LE +  GVPDERMGEE+ 
Sbjct: 462 QFELRPDGYGKIVGRMKEMVIRGGENIYPKELEDFLNTHPKILETHCIGVPDERMGEELC 521

Query: 339 ISIKLK-ENAKLNADDIRTFCKGKVSKF 365
             ++LK E   L   +++ FCKGK+S F
Sbjct: 522 AYVRLKDEGQSLEHAEMKQFCKGKISHF 549

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|373856103|ref|ZP_09598848.1| AMP-dependent synthetase and ligase [Bacillus sp. 1NLA3E] gi|372453940|gb|EHP27406.1| AMP-dependent synthetase and ligase [Bacillus sp. 1NLA3E]

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 67/85 (78%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+ E+GY Q+ GR+KDMIIRGGENIYP+EIEEF+ THP VL+    G+PDE+ GEEV   
Sbjct: 426 VMDENGYCQITGRLKDMIIRGGENIYPREIEEFLYTHPKVLDVQVVGIPDEKYGEEVTAW 485

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I+LKE+    +++IR +CKGK+S+F
Sbjct: 486 IRLKEDTTATSEEIRDYCKGKISRF 510

Source: Bacillus sp. 1NLA3E

Species: Bacillus sp. 1NLA3E

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
FB|FBgn0031703	593	CG12512 [Drosophila melanogast	0.238	0.146	0.533	1.6e-22
UNIPROTKB|G1K208	614	ACSF2 "Acyl-CoA synthetase fam	0.232	0.138	0.564	6e-22
UNIPROTKB|Q17QJ1	615	ACSF2 "Acyl-CoA synthetase fam	0.232	0.138	0.564	6e-22
UNIPROTKB|E1BS15	589	ACSF2 "Uncharacterized protein	0.230	0.142	0.595	8.9e-22
UNIPROTKB|E1BVI3	593	ACSF2 "Uncharacterized protein	0.230	0.141	0.595	9e-22
UNIPROTKB|F1RT96	609	ACSF2 "Uncharacterized protein	0.232	0.139	0.552	2e-21
UNIPROTKB|Q5LQG2	571	SPO2528 "AMP-binding enzyme" [	0.232	0.148	0.517	2.2e-21
TIGR_CMR|SPO_2528	571	SPO_2528 "AMP-binding enzyme"	0.232	0.148	0.517	2.2e-21
UNIPROTKB|B4DUF5	455	ACSF2 "Acyl-CoA synthetase fam	0.230	0.184	0.535	3e-21
TIGR_CMR|GSU_1103	552	GSU_1103 "long-chain-fatty-aci	0.232	0.153	0.505	3.4e-21

FB|FBgn0031703 CG12512 [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/90 (53%), Positives = 69/90 (76%)

Query:   279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG 338
             QFVL  +GYG++VGR+K+M+IRGGENI+PKEIE+F+  HP V+EA+  GVPDER+GEEV 
Sbjct:   463 QFVLEANGYGRIVGRLKEMLIRGGENIFPKEIEDFLNAHPQVIEAHVIGVPDERLGEEVC 522

Query:   339 ISIKLKEN---AKLNADDIRTFCKGKVSKF 365
               ++L+E    A   A+ ++ + KGK++ F
Sbjct:   523 AYVRLEEGVDPASFTAETLKAYAKGKLAHF 552

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|G1K208 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 264 (98.0 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 48/85 (56%), Positives = 62/85 (72%)

Query:   281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
             ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+   
Sbjct:   495 MMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICAC 554

Query:   341 IKLKENAKLNADDIRTFCKGKVSKF 365
             I+LKE  K  A++I+ FCKGK+S F
Sbjct:   555 IRLKEGEKTTAEEIKAFCKGKISHF 579

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q17QJ1 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 264 (98.0 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 48/85 (56%), Positives = 62/85 (72%)

Query:   281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
             ++ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+   
Sbjct:   496 MMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICAC 555

Query:   341 IKLKENAKLNADDIRTFCKGKVSKF 365
             I+LKE  K  A++I+ FCKGK+S F
Sbjct:   556 IRLKEGEKTTAEEIKAFCKGKISHF 580

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 8.9e-22, P = 8.9e-22
 Identities = 50/84 (59%), Positives = 59/84 (70%)

Query:   282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
             L E GY +++GR KDMIIRGGENIYP EIE+F+ THP V E    GV D RMGEEV   I
Sbjct:   471 LDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEVCACI 530

Query:   342 KLKENAKLNADDIRTFCKGKVSKF 365
             +L+      ADDI+ FCKGK+S F
Sbjct:   531 RLRAGQSCAADDIKAFCKGKISHF 554

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BVI3 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 50/84 (59%), Positives = 59/84 (70%)

Query:   282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
             L E GY +++GR KDMIIRGGENIYP EIE+F+ THP V E    GV D RMGEEV   I
Sbjct:   471 LDEHGYCRIIGRCKDMIIRGGENIYPAEIEQFLHTHPKVEEVQVVGVKDSRMGEEVCACI 530

Query:   342 KLKENAKLNADDIRTFCKGKVSKF 365
             +L+      ADDI+ FCKGK+S F
Sbjct:   531 RLRAGQSCAADDIKAFCKGKISHF 554

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 47/85 (55%), Positives = 61/85 (71%)

Query:   281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
             V+ E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V +    GV D RMGEE+   
Sbjct:   490 VMDEQGFCRIVGRAKDMIIRGGENIYPAELEDFFHTHPQVQDVQVVGVKDNRMGEEICAC 549

Query:   341 IKLKENAKLNADDIRTFCKGKVSKF 365
             I+LK+  K  A++I+ FCKGK+S F
Sbjct:   550 IRLKKGEKTTAEEIKAFCKGKISHF 574

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q5LQG2 SPO2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 258 (95.9 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 44/85 (51%), Positives = 64/85 (75%)

Query:   281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
             VL  DG+  + GR+KDMIIRGGENIYP+EIEEF+  HP++ E   +G+PD RMGEEV   
Sbjct:   447 VLDADGFCTITGRVKDMIIRGGENIYPREIEEFLFGHPDIKEVQVFGIPDARMGEEVCAW 506

Query:   341 IKLKENAKLNADDIRTFCKGKVSKF 365
             +  K   +++A+D+RT+C+G+++ F
Sbjct:   507 VVAKPGCEISAEDVRTYCRGQIAHF 531

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2528 SPO_2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 258 (95.9 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 44/85 (51%), Positives = 64/85 (75%)

Query:   281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
             VL  DG+  + GR+KDMIIRGGENIYP+EIEEF+  HP++ E   +G+PD RMGEEV   
Sbjct:   447 VLDADGFCTITGRVKDMIIRGGENIYPREIEEFLFGHPDIKEVQVFGIPDARMGEEVCAW 506

Query:   341 IKLKENAKLNADDIRTFCKGKVSKF 365
             +  K   +++A+D+RT+C+G+++ F
Sbjct:   507 VVAKPGCEISAEDVRTYCRGQIAHF 531

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016208 "AMP binding" evidence=ISS

UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 45/84 (53%), Positives = 60/84 (71%)

Query:   282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
             + E G+ ++VGR KDMIIRGGENIYP E+E+F  THP V E    GV D+RMGEE+   I
Sbjct:   337 MNEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACI 396

Query:   342 KLKENAKLNADDIRTFCKGKVSKF 365
             +LK+  +   ++I+ FCKGK+S F
Sbjct:   397 RLKDGEETTVEEIKAFCKGKISHF 420

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TIGR_CMR|GSU_1103 GSU_1103 "long-chain-fatty-acid--CoA ligase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 256 (95.2 bits), Expect = 3.4e-21, P = 3.4e-21
 Identities = 43/85 (50%), Positives = 64/85 (75%)

Query:   281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
             V+ E+GY ++ GRIK+MIIRGGENIYP+EIEEF+ THP + +   YGVPD + GE+V  +
Sbjct:   426 VMDENGYCKITGRIKNMIIRGGENIYPREIEEFLYTHPKISDVQIYGVPDRKYGEQVMAA 485

Query:   341 IKLKENAKLNADDIRTFCKGKVSKF 365
             + LK+   +  +D+R FC+GK++ +
Sbjct:   486 VILKKGDTMTEEDVRDFCRGKIANY 510

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	365
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-40
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	7e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	5e-39
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	5e-38
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-28
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-27
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-27
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	5e-27
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	8e-27
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-26
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	4e-26
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	7e-26
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-25
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-25
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	7e-25
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	8e-25
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-24
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-24
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	4e-23
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	7e-23
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	9e-22
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-21
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-21
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-21
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-21
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-20
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-20
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	5e-20
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	5e-20
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-19
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-19
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-19
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-19
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-19
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-19
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-18
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-18
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-18
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-18
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-18
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	4e-18
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	4e-18
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-18
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	7e-18
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-18
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-17
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-17
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-17
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-17
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-17
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-17
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-17
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-17
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	4e-17
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	7e-17
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-16
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-16
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-16
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	3e-16
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-16
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	5e-16
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	6e-16
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	7e-16
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	1e-15
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-15
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-15
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-15
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-15
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-15
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-15
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-15
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-15
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-15
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-15
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	4e-15
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	4e-15
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-15
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-15
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	7e-15
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	9e-15
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-14
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-14
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	2e-14
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-14
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-14
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	3e-14
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-14
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-14
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	8e-14
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-13
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-13
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-13
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-13
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-13
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-13
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-13
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-13
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-13
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-13
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-13
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	3e-13
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-13
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-13
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	5e-13
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-13
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	7e-13
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	8e-13
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-12
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-12
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-12
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-12
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-12
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-12
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	9e-12
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	9e-12
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-11
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-11
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-11
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	5e-11
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-11
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-11
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	7e-11
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	8e-11
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	9e-11
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-10
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-10
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-10
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	3e-10
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-10
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	4e-10
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	8e-10
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-09
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	1e-09
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-09
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-09
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-09
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-09
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	4e-09
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	5e-09
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	5e-09
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	6e-09
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-08
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-08
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	1e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-08
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-08
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-08
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-08
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-08
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-08
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	5e-08
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	5e-08
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	8e-08
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-07
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-07
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-07
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-07
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-07
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-07
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-07
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	2e-07
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-07
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-07
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-07
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	3e-07
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-07
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-07
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-07
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-07
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-07
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-07
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-07
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	6e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	8e-07
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	9e-07
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	9e-07
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-06
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-06
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-06
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-06
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	2e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-06
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-06
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-06
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-06
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-06
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-06
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-06
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	3e-06
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-06
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	5e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	5e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	5e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	5e-06
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	6e-06
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	7e-06
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	8e-06
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	9e-06
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-05
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	5e-05
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	9e-05
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	9e-05
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-04
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	5e-04
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	8e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	0.003
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	0.003

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  148 bits (377), Expect = 3e-40
 Identities = 48/85 (56%), Positives = 63/85 (74%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+ E+GY  +VGRIKDMIIRGGENIYP+EIEEF+ THP + +    GVPDE+ GEEV   
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I L+  A L  +D+R FC+GK++ +
Sbjct: 496 IILRPGATLTEEDVRDFCRGKIAHY 520

Length = 559

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  148 bits (375), Expect = 7e-40
 Identities = 50/87 (57%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
           V+ E+GY  +VGRIKDMIIRGGENIYP+EIEEF+ THP + +    GVPDE+ GEEV   
Sbjct: 436 VMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAW 495

Query: 109 IKLKENAKLNADDIRTFCKGKVKR-KI 134
           I L+  A L  +D+R FC+GK+   KI
Sbjct: 496 IILRPGATLTEEDVRDFCRGKIAHYKI 522

Length = 559

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  141 bits (358), Expect = 5e-39
 Identities = 48/85 (56%), Positives = 62/85 (72%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            + EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA   GVPDER+GE V   
Sbjct: 237 YMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAF 296

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + LK  A L  +++  FC+G++++F
Sbjct: 297 VVLKPGATLTEEELIAFCRGRLARF 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  138 bits (351), Expect = 5e-38
 Identities = 51/94 (54%), Positives = 62/94 (65%), Gaps = 5/94 (5%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D   + EDGY ++VGRIKDMIIRGGENIYP EIEE + THP V EA   GVPDER+GE V
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVV 293

Query: 106 GISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
              + LK  A L  +++  FC+G     KV R +
Sbjct: 294 AAFVVLKPGATLTEEELIAFCRGRLARFKVPRYV 327

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  114 bits (287), Expect = 5e-28
 Identities = 42/85 (49%), Positives = 60/85 (70%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            + E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V +   +GVPDE+ GEE+   
Sbjct: 437 TMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAW 496

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           ++L      + +++R FCK +++ F
Sbjct: 497 VRLHPGHAASEEELREFCKARIAHF 521

Length = 558

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  109 bits (276), Expect = 3e-27
 Identities = 37/82 (45%), Positives = 52/82 (63%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  +V R KDMII GGENIYP E+E  +  HP V +    GVPDE  GE V   + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           +  A L+A+++  FC+ +++ +
Sbjct: 295 RPGATLDAEELIAFCRERLAGY 316

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  111 bits (280), Expect = 5e-27
 Identities = 42/85 (49%), Positives = 59/85 (69%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D   + E GY ++VGR KDMIIRGGENIYP+EIEEF+ THP V +   +GVPDE+ GEE+
Sbjct: 434 DLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI 493

Query: 106 GISIKLKENAKLNADDIRTFCKGKV 130
              ++L      + +++R FCK ++
Sbjct: 494 VAWVRLHPGHAASEEELREFCKARI 518

Length = 558

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  110 bits (278), Expect = 5e-27
 Identities = 40/82 (48%), Positives = 54/82 (65%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  +V R KDMII GG N+YP+EIEE + +HP VLEA   GVPD   GE V   + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           KE A L  +++  FC+ +++ +
Sbjct: 421 KEGASLTEEELIAFCRERLAAY 442

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  110 bits (277), Expect = 8e-27
 Identities = 40/76 (52%), Positives = 50/76 (65%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  +V R KDMII GG N+YP+EIEE + +HP VLEA   GVPD   GE V   + L
Sbjct: 361 EDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVL 420

Query: 112 KENAKLNADDIRTFCK 127
           KE A L  +++  FC+
Sbjct: 421 KEGASLTEEELIAFCR 436

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (275), Expect = 2e-26
 Identities = 40/85 (47%), Positives = 56/85 (65%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            + EDGY  +  RIKD+II GGENIYP+E+E+ +  HP V E    GVPDE+ GE     
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + LK  A L+A ++R F +G+++KF
Sbjct: 464 VVLKPGATLDAKELRAFLRGRLAKF 488

Length = 521

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  106 bits (267), Expect = 4e-26
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 3/91 (3%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  +V R KDMII GGENIYP E+E  +  HP V +    GVPDE  GE V   + L
Sbjct: 235 EDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVL 294

Query: 112 KENAKLNADDIRTFCK---GKVKRKISCIFI 139
           +  A L+A+++  FC+      K   S  F+
Sbjct: 295 RPGATLDAEELIAFCRERLAGYKVPKSVEFV 325

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  108 bits (271), Expect = 7e-26
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 2/87 (2%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            + EDGY  +VGR+KD+II GGENIYP+EIE  +  HP V EA   GVPDER GE V   
Sbjct: 410 YVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAV 469

Query: 341 IKLKE--NAKLNADDIRTFCKGKVSKF 365
           + LK   +A+L A+++R F + +++ +
Sbjct: 470 VVLKPGGDAELTAEELRAFLRKRLALY 496

Length = 534

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  107 bits (268), Expect = 1e-25
 Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 2/91 (2%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
             + D   + EDGY  +VGR+KD+II GGENIYP+EIE  +  HP V EA   GVPDER 
Sbjct: 403 LRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERW 462

Query: 102 GEEVGISIKLKE--NAKLNADDIRTFCKGKV 130
           GE V   + LK   +A+L A+++R F + ++
Sbjct: 463 GERVVAVVVLKPGGDAELTAEELRAFLRKRL 493

Length = 534

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  104 bits (262), Expect = 2e-25
 Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 2/101 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D   L EDGY  + GRIK++I RGGE I P+E+EE +  HP V EA  +GVPDE  
Sbjct: 227 FRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELY 286

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKVKR-KI-SCIFII 140
           GEEV  ++ L+ ++K+  +++R F + ++   K+   I  +
Sbjct: 287 GEEVAAAVVLRADSKVTIEELRDFARKRLAAFKVPKKILFV 327

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  105 bits (264), Expect = 7e-25
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
            + EDGY  +  RIKD+II GGENIYP+E+E+ +  HP V E    GVPDE+ GE     
Sbjct: 404 YIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV 463

Query: 109 IKLKENAKLNADDIRTFCKGKV 130
           + LK  A L+A ++R F +G++
Sbjct: 464 VVLKPGATLDAKELRAFLRGRL 485

Length = 521

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  103 bits (258), Expect = 8e-25
 Identities = 38/85 (44%), Positives = 58/85 (68%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            L EDGY  + GRIK++I RGGE I P+E+EE +  HP V EA  +GVPDE  GEEV  +
Sbjct: 234 YLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAA 293

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + L+ ++K+  +++R F + +++ F
Sbjct: 294 VVLRADSKVTIEELRDFARKRLAAF 318

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  103 bits (260), Expect = 2e-24
 Identities = 34/88 (38%), Positives = 51/88 (57%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + + D   +  DGY +VVGRIKD I RGGE I P+EIE  + +HP V +A   G+PDE +
Sbjct: 366 YRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVL 425

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
           GE +   +  +  A     ++R F + +
Sbjct: 426 GERICAFVVPRGGAAPTLAELRAFLREQ 453

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  102 bits (257), Expect = 4e-24
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
             +  DGY +VVGRIKD I RGGE I P+EIE  + +HP V +A   G+PDE +GE +  
Sbjct: 372 VRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICA 431

Query: 340 SIKLKENAKLNADDIRTFCKGK-VSKF 365
            +  +  A     ++R F + + ++KF
Sbjct: 432 FVVPRGGAAPTLAELRAFLREQGLAKF 458

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =   99 bits (250), Expect = 4e-23
 Identities = 37/85 (43%), Positives = 53/85 (62%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            L E+GY  +V R KDM I GG N+YP E+EE +  HP V EA   GVPDER+GE     
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + LK  A+L  +++  +C+  ++K+
Sbjct: 461 VVLKPGAELTEEELIAYCREHLAKY 485

Length = 513

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 99.2 bits (248), Expect = 7e-23
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
            L E+GY  +V R KDM I GG N+YP E+EE +  HP V EA   GVPDER+GE     
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY 460

Query: 109 IKLKENAKLNADDIRTFCKG-----KVKRKI 134
           + LK  A+L  +++  +C+      KV R I
Sbjct: 461 VVLKPGAELTEEELIAYCREHLAKYKVPRSI 491

Length = 513

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 94.3 bits (235), Expect = 9e-22
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + + D   L E+GY  + GR KD+I  GGEN+YP E+E  +  HP V EA   GVPDE  
Sbjct: 226 YRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDR 285

Query: 102 GEEVGISIKLKENAKLNADDIRTFCK-----GKVKRKI 134
           GE +   + L+  A   A++++   +      KV R I
Sbjct: 286 GERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVI 323

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 95.4 bits (238), Expect = 1e-21
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D   L  DGY ++ GR KD+IIRGGENI  +EIE+ +  HP V E     +PDER+
Sbjct: 318 FRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERL 377

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK--VKRKI 134
           GE V   +     A L   ++      +   K+K 
Sbjct: 378 GERVCAVVVPAPGASLTLAELTEHLAAQGLAKQKW 412

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 94.2 bits (235), Expect = 2e-21
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            L  DGY ++ GR KD+IIRGGENI  +EIE+ +  HP V E     +PDER+GE V   
Sbjct: 325 RLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAV 384

Query: 341 IKLKENAKLNADDIRTFCKGK-VSK 364
           +     A L   ++      + ++K
Sbjct: 385 VVPAPGASLTLAELTEHLAAQGLAK 409

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 93.5 bits (233), Expect = 5e-21
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 281 VLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
           V+ EDGY +++GR  D II+ GG  +   EIEE +  HP V E    GVPD   GE V  
Sbjct: 323 VVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVA 382

Query: 340 SIKLKENAKLNADDIRTFCKGKVSKF 365
            +  +  A L   ++R + + K++ +
Sbjct: 383 VVVPEAGAALTLAELRAWAREKLAPY 408

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 92.0 bits (229), Expect = 7e-21
 Identities = 32/79 (40%), Positives = 46/79 (58%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            L E+GY  + GR KD+I  GGEN+YP E+E  +  HP V EA   GVPDE  GE +   
Sbjct: 233 YLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAF 292

Query: 341 IKLKENAKLNADDIRTFCK 359
           + L+  A   A++++   +
Sbjct: 293 VVLRPGADALAEELKAHLR 311

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 100
           F + D  V+ EDGY +++GR  D II+ GG  +   EIEE +  HP V E    GVPD  
Sbjct: 316 FKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALLEHPGVAEVAVIGVPDPD 375

Query: 101 MGEEVGISIKLKENAKLNADDIRTFCKGK 129
            GE V   +  +  A L   ++R + + K
Sbjct: 376 WGEAVVAVVVPEAGAALTLAELRAWAREK 404

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 91.5 bits (228), Expect = 2e-20
 Identities = 31/86 (36%), Positives = 42/86 (48%)

Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
               EDG+   V R KD I R GENI   E+E  I  HP V EA    VP E   +EV  
Sbjct: 310 GRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELGEDEVKA 369

Query: 340 SIKLKENAKLNADDIRTFCKGKVSKF 365
            + L+    L+ + +  FC+ ++  F
Sbjct: 370 VVVLRPGETLDPEALLEFCRDRLPYF 395

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 90.3 bits (225), Expect = 5e-20
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D+    EDG+   V R KD I R GENI   E+E  I  HP V EA    VP E  
Sbjct: 304 FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAVPSELG 363

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
            +EV   + L+    L+ + +  FC+ ++
Sbjct: 364 EDEVKAVVVLRPGETLDPEALLEFCRDRL 392

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 35/87 (40%), Positives = 56/87 (64%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D  V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A   G+P E   EEV
Sbjct: 451 DVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEV 510

Query: 106 GISIKLKENAKLNADDIRTFCKGKVKR 132
             ++ L+  A L+ + +R +C+  + R
Sbjct: 511 VAAVVLEPGAALDPEGLRAYCREHLTR 537

Length = 573

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 33/85 (38%), Positives = 57/85 (67%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+ EDG+ ++V RIK++II GG N+YP E+EE ++ HP V +A   G+P E   EEV  +
Sbjct: 454 VMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAA 513

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + L+  A L+ + +R +C+  ++++
Sbjct: 514 VVLEPGAALDPEGLRAYCREHLTRY 538

Length = 573

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 40/86 (46%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D  V+ E GY ++V R KDMI+  G N+YP EIEE + +HP VLE  A GVPDE  
Sbjct: 437 FRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHS 496

Query: 102 GEEVGISIKLKENAKLNADDIRTFCK 127
           GE V + + +K++  L  +D++ FCK
Sbjct: 497 GEAVKLFV-VKKDPALTEEDVKAFCK 521

Length = 557

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 88.4 bits (220), Expect = 2e-19
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            +GY  V+GR  D+II GGENIYP+EIE  +  HP V EA   GVPD+  G+     +  
Sbjct: 300 AEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVP 359

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
             +  ++ ++++ F   K++K+
Sbjct: 360 -NDDPVSVEELQAFLADKLAKY 380

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 88.4 bits (220), Expect = 4e-19
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDG   V GR  DMI+ GGEN++P E+E+ +  HP+V+EA   GV DE  G+ +   +  
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
              A L+ D I+ + +  ++++
Sbjct: 499 APGAALDEDAIKDYVRDNLARY 520

Length = 549

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.8 bits (218), Expect = 6e-19
 Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+ E GY ++V R KDMI+  G N+YP EIEE + +HP VLE  A GVPDE  GE V + 
Sbjct: 444 VMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLF 503

Query: 341 IKLKENAKLNADDIRTFCK 359
           + +K++  L  +D++ FCK
Sbjct: 504 V-VKKDPALTEEDVKAFCK 521

Length = 557

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 87.7 bits (218), Expect = 7e-19
 Identities = 31/81 (38%), Positives = 47/81 (58%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDG   V GR  DMI+ GGEN++P E+E+ +  HP+V+EA   GV DE  G+ +   +  
Sbjct: 439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVK 498

Query: 112 KENAKLNADDIRTFCKGKVKR 132
              A L+ D I+ + +  + R
Sbjct: 499 APGAALDEDAIKDYVRDNLAR 519

Length = 549

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 31/82 (37%), Positives = 45/82 (54%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDG+  +VGR K+MII GGENIYP E+E+ I    +V E    G    + GE     I  
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           K ++ L   D+   C+  ++K+
Sbjct: 443 KSSSVLIEKDVIEHCRLFLAKY 464

Length = 496

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 86.1 bits (214), Expect = 2e-18
 Identities = 33/85 (38%), Positives = 49/85 (57%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+ E+GY  VV R KDMI  GGEN+  +E+EE + THP V E    G+PD +  E V   
Sbjct: 404 VMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAV 463

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           +  K  A +  D++   C+ +++ F
Sbjct: 464 VVPKAGATVTEDELIAHCRARLAGF 488

Length = 523

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.0 bits (213), Expect = 2e-18
 Identities = 29/85 (34%), Positives = 51/85 (60%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           +++EDGY ++V R KDMI+  G N+YP E+E+ +   P VL+  A GVPDE+ GE + + 
Sbjct: 442 LIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVF 501

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + +K    L  + +    +  ++ +
Sbjct: 502 VVVKPGETLTKEQVMEHMRANLTGY 526

Length = 562

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDG+  +VGR K+MII GGENIYP E+E+ I    +V E    G    + GE     I  
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVK 442

Query: 112 KENAKLNADDIRTFCKGKV-KRKISCIFIII 141
           K ++ L   D+   C+  + K KI    + +
Sbjct: 443 KSSSVLIEKDVIEHCRLFLAKYKIPKEIVFL 473

Length = 496

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 33/85 (38%), Positives = 49/85 (57%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+  DGY ++  R KD+II GGENI   E+E  +  HP VLEA     PDE+ GE     
Sbjct: 410 VVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + LK  A +  +++  +C+ K++ F
Sbjct: 470 VVLKPGASVTEEELIEYCREKLAHF 494

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 30/85 (35%), Positives = 50/85 (58%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D  +++EDGY ++V R KDMI+  G N+YP E+E+ +   P VL+  A GVPDE+ GE +
Sbjct: 439 DIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAI 498

Query: 106 GISIKLKENAKLNADDIRTFCKGKV 130
            + + +K    L  + +    +  +
Sbjct: 499 KVFVVVKPGETLTKEQVMEHMRANL 523

Length = 562

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 53  DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 110
           D  G V   GR+ DMII GGENI+P E+E  +   P V E    G+PDER G+ V   + 
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446

Query: 111 LKENAKLNADDIRTFC 126
            +E   L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 285 DGYGQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342
           D  G V   GR+ DMII GGENI+P E+E  +   P V E    G+PDER G+ V   + 
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVV 446

Query: 343 LKENAKLNADDIRTFC 358
            +E   L+AD + TFC
Sbjct: 447 PREGETLSADALDTFC 462

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 85.0 bits (211), Expect = 5e-18
 Identities = 35/88 (39%), Positives = 49/88 (55%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F S D  V+  DGY ++  R KD+II GGENI   E+E  +  HP VLEA     PDE+ 
Sbjct: 403 FHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKW 462

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
           GE     + LK  A +  +++  +C+ K
Sbjct: 463 GETPCAFVVLKPGASVTEEELIEYCREK 490

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 84.2 bits (209), Expect = 7e-18
 Identities = 35/88 (39%), Positives = 49/88 (55%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F S D  V+ E+GY  VV R KDMI  GGEN+  +E+EE + THP V E    G+PD + 
Sbjct: 397 FHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKW 456

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
            E V   +  K  A +  D++   C+ +
Sbjct: 457 IEAVTAVVVPKAGATVTEDELIAHCRAR 484

Length = 523

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 84.2 bits (209), Expect = 8e-18
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 265 KAPDRKKCSQRPRYQF------VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 318
             P++   ++ P           L EDGY  +  R  DMII GG NIYP+EIE  + THP
Sbjct: 356 NDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHP 415

Query: 319 NVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVSKF 365
            V +   +GVPDE MGE V   ++  + A      A ++  + +G+++ +
Sbjct: 416 KVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHY 465

Length = 502

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D   L  +GY  V+GR  D+II GGENIYP+EIE  +  HP V EA   GVPD+  
Sbjct: 290 FHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEW 349

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
           G+     +    +  ++ ++++ F   K
Sbjct: 350 GQRPVAFVVP-NDDPVSVEELQAFLADK 376

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 83.9 bits (207), Expect = 1e-17
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           FL+ D   +  DGY  +V R KDMII GG N+YP+ IE+ I  HP V E    G+PD+  
Sbjct: 423 FLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYR 482

Query: 102 GEEVGISIKLKENAK-LNADDIRTFCKGKVKR 132
           GE     +KL+  AK  + D++R F  GK+ +
Sbjct: 483 GEAAKAFVKLRPGAKPFSLDELRAFLAGKLGK 514

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDG+  +V R KDMI+ GG N++P+E+E+ +  HP V +    GVPDE+ GE V   + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464

Query: 112 KENAKLNADDIRTFCK 127
           +  A ++A +++   K
Sbjct: 465 RPGAAVDAAELQAHVK 480

Length = 524

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDG+  +V R KDMI+ GG N++P+E+E+ +  HP V +    GVPDE+ GE V   + L
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVL 464

Query: 344 KENAKLNADDIRTFCK 359
           +  A ++A +++   K
Sbjct: 465 RPGAAVDAAELQAHVK 480

Length = 524

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 34/84 (40%), Positives = 53/84 (63%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L   G   + GRIK++I RGGE I P+ +E  + +HPNV+EA  +GVPD+  GE V   I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
             +E+A   A+++  FC+ +++ F
Sbjct: 478 VPRESAPPTAEELVQFCRERLAAF 501

Length = 534

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L   G+  + GR  DM I GG N+YP+EIEE + THP V E    GVPD   G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462

Query: 342 -KLKENAKLNADDIRTFCKGKVSKF 365
              ++ A ++  ++  +  GKV+++
Sbjct: 463 CVARDGAPVDEAELLAWLDGKVARY 487

Length = 528

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 82.7 bits (204), Expect = 3e-17
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            DGY  +V R KDMII GG N+YP+ IE+ I  HP V E    G+PD+  GE     +KL
Sbjct: 433 TDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKL 492

Query: 344 KENAK-LNADDIRTFCKGKVSK 364
           +  AK  + D++R F  GK+ K
Sbjct: 493 RPGAKPFSLDELRAFLAGKLGK 514

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           L   G+  + GR  DM I GG N+YP+EIEE + THP V E    GVPD   G EVG+++
Sbjct: 404 LDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWG-EVGVAV 462

Query: 110 -KLKENAKLNADDIRTFCKGKVKR 132
              ++ A ++  ++  +  GKV R
Sbjct: 463 CVARDGAPVDEAELLAWLDGKVAR 486

Length = 528

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 82.0 bits (202), Expect = 4e-17
 Identities = 33/84 (39%), Positives = 48/84 (57%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L   G   +VGR  DMII GGEN+YP+ +E  +  HP V +    GVPDER G  +   +
Sbjct: 406 LDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFV 465

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
            L   + ++A  +R + K +VS+F
Sbjct: 466 VLHPGSGVDAAQLRDYLKDRVSRF 489

Length = 516

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 81.5 bits (202), Expect = 7e-17
 Identities = 35/84 (41%), Positives = 58/84 (69%), Gaps = 2/84 (2%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L E+G+  V+ R  D+II GGENIYP EIEE + +HP V EA   GVPD++ G +V ++ 
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
            + ++ ++  +++R FC+ K++K+
Sbjct: 429 -VVKSGEVTEEELRHFCEEKLAKY 451

Length = 483

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           L EDGY  +  R  DMII GG NIYP+EIE  + THP V +   +GVPDE MGE V   +
Sbjct: 379 LDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVV 438

Query: 110 KLKENAKLN---ADDIRTFCKGKVKR 132
           +  + A      A ++  + +G++  
Sbjct: 439 QPADGADAGDALAAELIAWLRGRLAH 464

Length = 502

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG-ISIKL 343
           DG+  VV R KDM I GGEN+YP EIE  +  HP + E    G+ D + G EVG ++I  
Sbjct: 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWG-EVGYLAIVP 432

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
            + A L+ + IR+    +++K+
Sbjct: 433 ADGAPLDLERIRSHLSTRLAKY 454

Length = 488

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 33/81 (40%), Positives = 51/81 (62%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           L   G   + GRIK++I RGGE I P+ +E  + +HPNV+EA  +GVPD+  GE V   I
Sbjct: 418 LSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVI 477

Query: 110 KLKENAKLNADDIRTFCKGKV 130
             +E+A   A+++  FC+ ++
Sbjct: 478 VPRESAPPTAEELVQFCRERL 498

Length = 534

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 79.3 bits (195), Expect = 3e-16
 Identities = 33/87 (37%), Positives = 47/87 (54%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D   L   G   +VGR  DMII GGEN+YP+ +E  +  HP V +    GVPDER G  +
Sbjct: 402 DMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRL 461

Query: 106 GISIKLKENAKLNADDIRTFCKGKVKR 132
              + L   + ++A  +R + K +V R
Sbjct: 462 AAFVVLHPGSGVDAAQLRDYLKDRVSR 488

Length = 516

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 36/86 (41%), Positives = 58/86 (67%), Gaps = 3/86 (3%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           L E+G+  V+ R  D+II GGENIYP EIEE + +HP V EA   GVPD++ G +V ++ 
Sbjct: 370 LDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWG-QVPVAF 428

Query: 110 KLKENAKLNADDIRTFCKGKV-KRKI 134
            + ++ ++  +++R FC+ K+ K K+
Sbjct: 429 -VVKSGEVTEEELRHFCEEKLAKYKV 453

Length = 483

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 79.5 bits (197), Expect = 3e-16
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E GY  +VGR KD+II GG N+YPKE+E  I   P V+E+   GVP    GE V   +  
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           K  A L+   I    KG++++F
Sbjct: 449 KPGAALDEAAILAALKGRLARF 470

Length = 504

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 78.8 bits (195), Expect = 5e-16
 Identities = 32/80 (40%), Positives = 42/80 (52%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            DGY  + GR KD+IIRGG NI P  IEE +  HP V  A A G PD   GE     ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516

Query: 344 KENAKLNADDIRTFCKGKVS 363
           K  A     ++  F +  ++
Sbjct: 517 KPGASATEAELLAFARDHIA 536

Length = 632

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 78.7 bits (194), Expect = 6e-16
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG-ISIKL 111
           DG+  VV R KDM I GGEN+YP EIE  +  HP + E    G+ D + G EVG ++I  
Sbjct: 374 DGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWG-EVGYLAIVP 432

Query: 112 KENAKLNADDIRTFCKGKVKR 132
            + A L+ + IR+    ++ +
Sbjct: 433 ADGAPLDLERIRSHLSTRLAK 453

Length = 488

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 32/79 (40%), Positives = 41/79 (51%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
            DGY  + GR KD+IIRGG NI P  IEE +  HP V  A A G PD   GE     ++L
Sbjct: 457 ADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQL 516

Query: 112 KENAKLNADDIRTFCKGKV 130
           K  A     ++  F +  +
Sbjct: 517 KPGASATEAELLAFARDHI 535

Length = 632

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D  V+  DG+ ++V R KD+II  G N+YP EIE+ +  HP V    A GVPDER 
Sbjct: 443 FKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERS 502

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
           GE V + +  ++   L+ ++++ +CK      KV + I
Sbjct: 503 GEAVKLFVVARD-PGLSVEELKAYCKENFTGYKVPKHI 539

Length = 562

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D  V+ E+G+ ++V R KDMI+  G N+YP EIE+ +  HP VLE  A GVP E  GE V
Sbjct: 438 DIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAV 497

Query: 106 GISIKLKENAKLNADDIRTFCK 127
            I + +K++  L  +++ T C+
Sbjct: 498 KIFV-VKKDPSLTEEELITHCR 518

Length = 560

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+ E+G+ ++V R KDMI+  G N+YP EIE+ +  HP VLE  A GVP E  GE V I 
Sbjct: 441 VMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIF 500

Query: 341 IKLKENAKLNADDIRTFCK 359
           + +K++  L  +++ T C+
Sbjct: 501 V-VKKDPSLTEEELITHCR 518

Length = 560

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
            DGY  + GR KD+IIRGG NI P+ IEE +  HP V  A A G PD   GE     ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305

Query: 112 KENAKLNADDIRTFCK 127
           K  A +   ++  F K
Sbjct: 306 KPGATVTEGELLAFVK 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 33/76 (43%), Positives = 42/76 (55%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            DGY  + GR KD+IIRGG NI P+ IEE +  HP V  A A G PD   GE     ++L
Sbjct: 246 ADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQL 305

Query: 344 KENAKLNADDIRTFCK 359
           K  A +   ++  F K
Sbjct: 306 KPGATVTEGELLAFVK 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E GY  +VGR KD+II GG N+YPKE+E  I   P V+E+   GVP    GE V   +  
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448

Query: 112 KENAKLNADDIRTFCKGKVKR-KI--SCIFI 139
           K  A L+   I    KG++ R K      F+
Sbjct: 449 KPGAALDEAAILAALKGRLARFKQPKRVFFV 479

Length = 504

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E G+  +V R KDMI+  G N+YP EIE+ I   P VLE  A GVPDE+ GE V + I +
Sbjct: 449 EQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-V 507

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           K++  L A+D++   +  ++ +
Sbjct: 508 KKDPALTAEDVKAHARANLTGY 529

Length = 560

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 30/91 (32%), Positives = 48/91 (52%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D+ V   DG+ + V RIKD I R GENI   E+E+ + +HP V  A  + VP E  
Sbjct: 402 FHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELG 461

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKVKR 132
            +EV  ++ L++   L    +   C+ ++  
Sbjct: 462 EDEVMAAVVLRDGTALEPVALVRHCEPRLAY 492

Length = 542

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 281 VLRE-DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
           V+R+ DG+ + V RIKD I R GENI   E+E+ + +HP V  A  + VP E   +EV  
Sbjct: 408 VVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMA 467

Query: 340 SIKLKENAKLNADDIRTFCKGKVSKF 365
           ++ L++   L    +   C+ +++ F
Sbjct: 468 AVVLRDGTALEPVALVRHCEPRLAYF 493

Length = 542

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 76.0 bits (187), Expect = 4e-15
 Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+  DG+ ++V R KD+II  G N+YP EIE+ +  HP V    A GVPDER GE V + 
Sbjct: 450 VIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLF 509

Query: 341 IKLKENAKLNADDIRTFCK 359
           +  ++   L+ ++++ +CK
Sbjct: 510 VVARD-PGLSVEELKAYCK 527

Length = 562

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 76.3 bits (188), Expect = 4e-15
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 257 KRGLPAR-VKAPDRKKCSQRPRYQFV-------LREDGYGQVVGRIKDMIIRGGENIYPK 308
           + G P   +  P +   ++ P   +        + EDGY  +  R   MII GG NIYP+
Sbjct: 359 EGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQ 418

Query: 309 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNAD---DIRTFCKGKVSKF 365
           E E  + THP V +A  +GVP+E +GEEV   ++  +          ++  FC+ ++S+ 
Sbjct: 419 EAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQ 478

Length = 511

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+ V   +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315

Query: 110 KLKENAKLNADDIRTFCKG-----KVKRKI 134
           +L+  A L+  ++R  C+      K+ R I
Sbjct: 316 QLRAGAGLDLAELRDHCRQHLAGYKLPRAI 345

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 29/84 (34%), Positives = 51/84 (60%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+ V   +
Sbjct: 256 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVV 315

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
           +L+  A L+  ++R  C+  ++ +
Sbjct: 316 QLRAGAGLDLAELRDHCRQHLAGY 339

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D   + E+GY   VGR  DMI   G  + P EIEE I  HP V EA   GVPD  +G+
Sbjct: 235 TGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQ 294

Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
            +   +   +   L+  ++   C+
Sbjct: 295 AIVAVVVSADGESLDEKELLKHCR 318

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 76.1 bits (187), Expect = 5e-15
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E G+  +V R KDMI+  G N+YP EIE+ I   P VLE  A GVPDE+ GE V + I +
Sbjct: 449 EQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-V 507

Query: 112 KENAKLNADDIRTFCKGKVKR 132
           K++  L A+D++   +  +  
Sbjct: 508 KKDPALTAEDVKAHARANLTG 528

Length = 560

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 5/98 (5%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D  VL  DGY ++  R KD+II GGENI   E+E+ +  HP VL A     PD + 
Sbjct: 418 FHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKW 477

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
           GE     ++LK+ A    ++I   C+      KV + +
Sbjct: 478 GEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAV 515

Length = 545

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.2 bits (185), Expect = 9e-15
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 1/102 (0%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F S D     E+GY  VV R KDMII GGENIY  E+E  + +HP+++E    G  DE+ 
Sbjct: 401 FHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKW 460

Query: 102 GE-EVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIV 142
           GE  V ++    ++A L  +D+  F   ++ R      + IV
Sbjct: 461 GEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIV 502

Length = 542

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 28/76 (36%), Positives = 39/76 (51%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+GY   VGR  DMI   G  + P EIEE I  HP V EA   GVPD  +G+ +   +  
Sbjct: 243 EEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVS 302

Query: 344 KENAKLNADDIRTFCK 359
            +   L+  ++   C+
Sbjct: 303 ADGESLDEKELLKHCR 318

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 32/85 (37%), Positives = 47/85 (55%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           VL  DGY ++  R KD+II GGENI   E+E+ +  HP VL A     PD + GE     
Sbjct: 425 VLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAF 484

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           ++LK+ A    ++I   C+  ++ F
Sbjct: 485 VELKDGASATEEEIIAHCREHLAGF 509

Length = 545

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  +  R   MII GG NIYP+E E  + THP V +A  +GVP+E +GEEV   ++ 
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQP 453

Query: 112 KENAKLNAD---DIRTFCKGKVKR 132
            +          ++  FC+ ++ R
Sbjct: 454 VDGVDPGPALAAELIAFCRQRLSR 477

Length = 511

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 342
           E+GY  VV R KDMII GGENIY  E+E  + +HP+++E    G  DE+ GE  V ++  
Sbjct: 411 EEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAV 470

Query: 343 LKENAKLNADDIRTFCKGKVSKF 365
             ++A L  +D+  F   +++++
Sbjct: 471 RNDDAALTLEDLAEFLTDRLARY 493

Length = 542

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+G+  +VGR K+MI+ GG NI+P+EIE  +  HP V E    GVPD   GE+    IK 
Sbjct: 373 EEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG 432

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
               +     +++FC  ++S F
Sbjct: 433 SATKQ----QLKSFCLQRLSSF 450

Length = 487

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDG   +V R K++I   G  + P E+E  +  HP V +A   G+PDE  GE     + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           K  +KL   +++ +   KV+K+
Sbjct: 444 KPGSKLTEQEVKDYVAKKVAKY 465

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           L E+G   VVGR  +MI+ GGEN+YP E+E+ + THP+V EA   GV DE+ G+ +   +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485

Query: 110 KLKENAKLNADDIRTFCKG-----KVKRKIS 135
            LK  A    + ++   +      KV R I 
Sbjct: 486 VLKPGASATPETLKQHVRDNLANYKVPRDIV 516

Length = 537

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 30/84 (35%), Positives = 46/84 (54%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L  DGY  +  R +DM+I GG NIYP EIE  +   P V +   +G+PD   GE +   +
Sbjct: 389 LDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVV 448

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
           + +  A L+  DIR   K +++ +
Sbjct: 449 EPQPGATLDEADIRAQLKARLAGY 472

Length = 509

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 72.9 bits (179), Expect = 4e-14
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L  +G+  V+GR  D+II GGENIYP+EIE  +  HP + EA     PD   G +V ++ 
Sbjct: 330 LDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWG-QVPVAY 388

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
            +   + ++   +  +   K++K+
Sbjct: 389 -IVSESDISQAKLIAYLTEKLAKY 411

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 72.5 bits (178), Expect = 5e-14
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L E+G   VVGR  +MI+ GGEN+YP E+E+ + THP+V EA   GV DE+ G+ +   +
Sbjct: 426 LDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFV 485

Query: 342 KLKENAKLNADDIRT 356
            LK  A    + ++ 
Sbjct: 486 VLKPGASATPETLKQ 500

Length = 537

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 72.2 bits (178), Expect = 8e-14
 Identities = 33/82 (40%), Positives = 45/82 (54%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY Q+  R KD+I  GGE I   E+E  +  HP V EA   GVP E+ GE     + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           K  AK+  +++      KV+K+
Sbjct: 469 KPGAKVTEEELLEHLAKKVAKW 490

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 45  RDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
           RD     E+G+  +VGR K+MI+ GG NI+P+EIE  +  HP V E    GVPD   GE+
Sbjct: 366 RDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEK 425

Query: 105 VGISIKLKENAKLNADDIRTFCKGK 129
               IK     +     +++FC  +
Sbjct: 426 PVAIIKGSATKQ----QLKSFCLQR 446

Length = 487

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 43  LSRDQFV-------LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG 95
           + R  F+       L  DGY  +  R +DM+I GG NIYP EIE  +   P V +   +G
Sbjct: 375 IDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFG 434

Query: 96  VPDERMGEEVGISIKLKENAKLNADDIRTFCKG-----KVKRKI 134
           +PD   GE +   ++ +  A L+  DIR   K      KV + I
Sbjct: 435 IPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHI 478

Length = 509

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 32/84 (38%), Positives = 45/84 (53%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L E+G+  +  R KDMII GGENI   E+E  I   P V EA   GV D+R GE +   +
Sbjct: 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
            L   A L  + +   C+ +++ F
Sbjct: 443 VLNPGATLTLEALDRHCRQRLASF 466

Length = 497

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + S D   + E GY ++ GR KD+I+RGGENI  +E+E+ +  HP + +A    +PDER+
Sbjct: 412 YYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERL 471

Query: 102 GEEVGISIKLKENA---KLNADDIRTFCKGKV-KRK 133
           GE     + LK       L  + +  F + +V K K
Sbjct: 472 GERSCAYVVLKAPHHSLTL-EEVVAFFSRKRVAKYK 506

Length = 547

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F S D  V   DGY ++  R KD+II GGENI   E+E  + THP VLEA     PDER 
Sbjct: 432 FHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERW 491

Query: 102 GEEVGISIKLKENAKLN-----ADDIRTFCKGKV 130
           GE     + LK     +     A+DI  FC+ ++
Sbjct: 492 GESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL 525

Length = 567

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 29/62 (46%), Positives = 35/62 (56%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + S D   +  DGY  VVGR KD I RGGE I  +EIE  +  HP V+ A    + DE M
Sbjct: 411 YCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELM 470

Query: 102 GE 103
           GE
Sbjct: 471 GE 472

Length = 536

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 40  FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 93
             + + D     EDGY +++GR  D +   GE I P EIE  +  HP V EA  
Sbjct: 359 GMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 70.7 bits (174), Expect = 2e-13
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDG   +V R K++I   G  + P E+E  +  HP V +A   G+PDE  GE     + L
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVL 443

Query: 112 KENAKLNADDIRTFCKGKV 130
           K  +KL   +++ +   KV
Sbjct: 444 KPGSKLTEQEVKDYVAKKV 462

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E GY ++ GR KD+I+RGGENI  +E+E+ +  HP + +A    +PDER+GE     + L
Sbjct: 422 EAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVL 481

Query: 344 KENA---KLNADDIRTFCKGKVSK 364
           K       L  + +  F + +V+K
Sbjct: 482 KAPHHSLTL-EEVVAFFSRKRVAK 504

Length = 547

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 30/84 (35%), Positives = 53/84 (63%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+EV   +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
           +L+E A+ +  ++R  C+  ++ +
Sbjct: 478 QLREGARPDLAELRAHCRSSLAGY 501

Length = 533

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 34/89 (38%), Positives = 46/89 (51%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F S D   L E+G+  +  R KDMII GGENI   E+E  I   P V EA   GV D+R 
Sbjct: 375 FRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRW 434

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
           GE +   + L   A L  + +   C+ ++
Sbjct: 435 GERITAVVVLNPGATLTLEALDRHCRQRL 463

Length = 497

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 70.3 bits (173), Expect = 3e-13
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           +  DG   ++GR    I  GGE ++P+E+EE ++ HP+V +A   GVPDER G+EV   +
Sbjct: 418 VEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVV 477

Query: 110 KLKENAKLNADDIRTFCKG-----KVKRKI 134
           +L+E A+ +  ++R  C+      KV R I
Sbjct: 478 QLREGARPDLAELRAHCRSSLAGYKVPRAI 507

Length = 533

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+GY   + R+K MI   G  ++P E+E  +  HP VLE    G PD R GE V   + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381

Query: 344 KENA--KLNADDIRTFCKGKVSKF 365
           K +   K+  +DI  +C+ +++ +
Sbjct: 382 KPDYRGKVTEEDIIEWCRERMAAY 405

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           DGY ++  R KD+II GGENI   E+E  + THP VLEA     PDER GE     + LK
Sbjct: 443 DGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLK 502

Query: 345 ENAKLN-----ADDIRTFCKGKV 362
                +     A+DI  FC+ ++
Sbjct: 503 PGVDKSDEAALAEDIMKFCRERL 525

Length = 567

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 27/55 (49%), Positives = 32/55 (58%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
            +  DGY  VVGR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE
Sbjct: 418 SIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGE 472

Length = 536

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA 325
              EDGY +++GR  D +   GE I P EIE  +  HP V EA  
Sbjct: 368 RWDEDGYLEILGRKDDQVKIRGERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 68.9 bits (169), Expect = 7e-13
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E+GY   + R+K MI   G  ++P E+E  +  HP VLE    G PD R GE V   + L
Sbjct: 322 EEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVL 381

Query: 112 KENA--KLNADDIRTFCKG 128
           K +   K+  +DI  +C+ 
Sbjct: 382 KPDYRGKVTEEDIIEWCRE 400

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 69.0 bits (169), Expect = 8e-13
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D   L  +G+  V+GR  D+II GGENIYP+EIE  +  HP + EA     PD   
Sbjct: 322 FNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEW 381

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV-KRKI 134
           G +V ++  +   + ++   +  +   K+ K K+
Sbjct: 382 G-QVPVAY-IVSESDISQAKLIAYLTEKLAKYKV 413

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 32/81 (39%), Positives = 43/81 (53%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY Q+  R KD+I  GGE I   E+E  +  HP V EA   GVP E+ GE     + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468

Query: 112 KENAKLNADDIRTFCKGKVKR 132
           K  AK+  +++      KV +
Sbjct: 469 KPGAKVTEEELLEHLAKKVAK 489

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 67.8 bits (165), Expect = 2e-12
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  + 
Sbjct: 391 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 450

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
            E     +  +   K   +++        
Sbjct: 451 QERPLAVVVPRG-EKPTPEELNEHLLKAG 478

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 53  DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 110
           D  G +  +GR  D I  GGEN+YP+E+E  +  HP V      GVPD R+ E V   ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484

Query: 111 LKEN 114
           L++ 
Sbjct: 485 LRDG 488

Length = 563

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 285 DGYGQV--VGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342
           D  G +  +GR  D I  GGEN+YP+E+E  +  HP V      GVPD R+ E V   ++
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVR 484

Query: 343 LKEN 346
           L++ 
Sbjct: 485 LRDG 488

Length = 563

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 112
           DGY ++ GR KD+IIRGGENI   EIE  +  HP + +      PDER+GE     +  +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491

Query: 113 ENAKLNADDIRTFCKGK 129
               L+ +++  F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508

Length = 547

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 29/77 (37%), Positives = 43/77 (55%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           DGY ++ GR KD+IIRGGENI   EIE  +  HP + +      PDER+GE     +  +
Sbjct: 432 DGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPR 491

Query: 345 ENAKLNADDIRTFCKGK 361
               L+ +++  F K +
Sbjct: 492 PGQSLDFEEMVEFLKAQ 508

Length = 547

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 65.7 bits (160), Expect = 9e-12
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 112
           +GY ++ GR KD+IIRGGENI   EIE  +  HP V +      PDER+GE     +  K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489

Query: 113 ENAKLNADDIRTFCKGK 129
               L+   +  F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 65.7 bits (160), Expect = 9e-12
 Identities = 30/77 (38%), Positives = 41/77 (53%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +GY ++ GR KD+IIRGGENI   EIE  +  HP V +      PDER+GE     +  K
Sbjct: 430 EGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPK 489

Query: 345 ENAKLNADDIRTFCKGK 361
               L+   +  F K +
Sbjct: 490 PGCTLDFAAMVAFLKAQ 506

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           S D      DGY  V GR+KD I RGGE I  +E+E  +  HP V +A    +PDE +GE
Sbjct: 418 SGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGE 477

Query: 104 EVGISIKLKENAKLNADDIRTF 125
           +    I +KE   L A  +R F
Sbjct: 478 KSCAFIVVKE-PPLRAAQLRRF 498

Length = 542

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
              DGY  V GR+KD I RGGE I  +E+E  +  HP V +A    +PDE +GE+    I
Sbjct: 424 RDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFI 483

Query: 342 KLKENAKLNADDIRTF 357
            +KE   L A  +R F
Sbjct: 484 VVKE-PPLRAAQLRRF 498

Length = 542

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 260 LPAR-VKAPDRKKCSQRPRYQF--------VLREDGYGQVVGRIKDMIIRGGENIYPKEI 310
           LP R +  P++   +Q P + F         + EDGY  +  R   MII GG NIYP+E 
Sbjct: 358 LPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQET 417

Query: 311 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE 345
           E  +  HP V +    GVPD  MGE+V   I+L E
Sbjct: 418 ENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVE 452

Length = 501

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+G+   V R  +MI RGGEN+   E+E  I THP + +    G+ D    E +   + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
            E   L+ ++   FC+  ++KF
Sbjct: 470 NEGETLSEEEFFAFCEQNMAKF 491

Length = 517

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
            L+ D      DGY    GR  D+I   G  I P EIEE +  HP VLEA   GVPD   
Sbjct: 318 LLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPER 377

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKVKRKI 134
           GE V   + L E     +D++ T  +  VK ++
Sbjct: 378 GEIVKAFVVLAEGV-EPSDELATELQELVKSRL 409

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E+GY  +  R+K MI   G  ++P E+E  +  HP + EA     PD R GE V   + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487

Query: 112 KENA--KLNADDIRTFCKG 128
           +  A  K   ++I  + + 
Sbjct: 488 RPEARGKTTEEEIIAWARE 506

Length = 546

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+GY  +  R+K MI   G  ++P E+E  +  HP + EA     PD R GE V   + L
Sbjct: 428 EEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVL 487

Query: 344 KENA--KLNADDIRTFCKG 360
           +  A  K   ++I  + + 
Sbjct: 488 RPEARGKTTEEEIIAWARE 506

Length = 546

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.1 bits (153), Expect = 8e-11
 Identities = 30/84 (35%), Positives = 47/84 (55%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           + EDG+  V  R KDMI+  G N+YP+E+EE +  H  V E    GVPD   GE V   +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
            LKE  + + +++  F +  ++ +
Sbjct: 501 VLKEGTECSEEELNQFARKYLAAY 524

Length = 563

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.7 bits (152), Expect = 9e-11
 Identities = 30/78 (38%), Positives = 44/78 (56%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           + EDG+  V  R KDMI+  G N+YP+E+EE +  H  V E    GVPD   GE V   +
Sbjct: 441 MDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV 500

Query: 110 KLKENAKLNADDIRTFCK 127
            LKE  + + +++  F +
Sbjct: 501 VLKEGTECSEEELNQFAR 518

Length = 563

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E     
Sbjct: 398 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 457

Query: 341 IKLKENAKLNADDIRTFCKGKV 362
           +  +   K   +++        
Sbjct: 458 VVPRG-EKPTPEELNEHLLKAG 478

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 29/62 (46%), Positives = 32/62 (51%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            DGY    GR  D+I   G  I P EIEE +  HP VLEA   GVPD   GE V   + L
Sbjct: 328 ADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVL 387

Query: 344 KE 345
            E
Sbjct: 388 AE 389

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + + D   L  +GY  VVGR KD I RGGE I  +EIE  +  HP V +A    +PDE +
Sbjct: 409 YYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELL 468

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKG------KVKRKISCI 137
           GE+    I +++ A L A  +R F +       K+  ++  +
Sbjct: 469 GEKSCAFIVVRDPA-LKAAQLRRFLRERGLAEYKLPDRVEFV 509

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 30/62 (48%), Positives = 36/62 (58%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  +  R   MII GG NIYP+E E  +  HP V +    GVPD  MGE+V   I+L
Sbjct: 391 EDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQL 450

Query: 112 KE 113
            E
Sbjct: 451 VE 452

Length = 501

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D F   EDGY   V R  DMI+  G NI   E+E+ + THP+V E    GVPDE  G+ V
Sbjct: 371 DIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIV 430

Query: 106 GISIKLKENAK---LNADDIRTFCK 127
              I L++  K   L A+ ++ F K
Sbjct: 431 CAHIVLRDGTKATELLAERLQDFVK 455

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L  +GY  VVGR KD I RGGE I  +EIE  +  HP V +A    +PDE +GE+    I
Sbjct: 417 LTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFI 476

Query: 342 KLKENAKLNADDIRTFCKG 360
            +++ A L A  +R F + 
Sbjct: 477 VVRDPA-LKAAQLRRFLRE 494

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L   GY  ++GR    II GGEN+YP E+E  I     V +    G+PD   GE V  +I
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV-TAI 392

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
            + ++  ++ ++++T  K ++S F
Sbjct: 393 YVPKDPSISLEELKTAIKDQLSPF 416

Length = 452

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 25/75 (33%), Positives = 38/75 (50%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E+G+   V R  +MI RGGEN+   E+E  I THP + +    G+ D    E +   + L
Sbjct: 410 EEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVL 469

Query: 112 KENAKLNADDIRTFC 126
            E   L+ ++   FC
Sbjct: 470 NEGETLSEEEFFAFC 484

Length = 517

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
           F   EDGY   V R  DMI+  G NI   E+E+ + THP+V E    GVPDE  G+ V  
Sbjct: 373 FRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQIVCA 432

Query: 340 SIKLKENAK---LNADDIRTFCK 359
            I L++  K   L A+ ++ F K
Sbjct: 433 HIVLRDGTKATELLAERLQDFVK 455

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + + D     EDGY  + GR  D+I   G+ I P EIE  +  HP V EA   GVPD   
Sbjct: 398 YRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGK 457

Query: 102 GEEVGISIKLKENAKLN--ADDIRTFCKGKVKRKISCIFI 139
           G+ V   + L    + N  A++IR      V R I    I
Sbjct: 458 GQIVLAFVVLAAGVEPNELAEEIRRH----VARNIGPHAI 493

Length = 528

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
               EDGY  + GR  D+I   G+ I P EIE  +  HP V EA   GVPD   G+ V  
Sbjct: 404 AERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLA 463

Query: 340 SIKLKENAKLN--ADDIRTFCKGKVSKF 365
            + L    + N  A++IR      +   
Sbjct: 464 FVVLAAGVEPNELAEEIRRHVARNIGPH 491

Length = 528

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY   +GR  D+II  G  I P ++E  +  HP V EA   GVPD   GE V   + L
Sbjct: 329 EDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVL 388

Query: 344 KENAKLN---ADDIRTFCKGKVSK 364
           KE    +   A++++ F K ++S 
Sbjct: 389 KEGYAGSDELAEELQLFVKKRLSA 412

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           +++ D     EDGY   +GR  D+II  G  I P ++E  +  HP V EA   GVPD   
Sbjct: 319 YVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPLR 378

Query: 102 GEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKIS 135
           GE V   + LKE    +   A++++ F    VK+++S
Sbjct: 379 GEIVKAFVVLKEGYAGSDELAEELQLF----VKKRLS 411

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 25/82 (30%), Positives = 40/82 (48%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
             GY ++  R KD+I  GGE I   ++E     HP V EA   GV   +  E   + ++L
Sbjct: 422 AYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQL 481

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           K       ++I  +  GK++K+
Sbjct: 482 KPGETATREEILKYMDGKIAKW 503

Length = 542

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 51  REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           REDG+  + GR  +MII GG NI P E++   +    V EA  Y +PDE  G  VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471

Length = 540

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 283 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           REDG+  + GR  +MII GG NI P E++   +    V EA  Y +PDE  G  VG+++
Sbjct: 413 REDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAV 471

Length = 540

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 23/56 (41%), Positives = 29/56 (51%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           L   GY  ++GR    II GGEN+YP E+E  I     V +    G+PD   GE V
Sbjct: 334 LDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVV 389

Length = 452

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D++   EDGY    GR  DM+   G  + P E+E+ +  HP VLEA   G  DE    + 
Sbjct: 390 DKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKP 449

Query: 106 GISIKLKENAKLN---ADDIRTFCKGK 129
              + LK+  + +     +++ F K K
Sbjct: 450 KAFVVLKDGYQPSPELETELKDFVKDK 476

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 27/64 (42%), Positives = 34/64 (53%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           +L+ D+ +  EDGY   VGR  D+I   G  I P E+E  +  HP V EA   G PD   
Sbjct: 309 YLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVR 368

Query: 102 GEEV 105
           GE V
Sbjct: 369 GEVV 372

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 100
           + D+F    DG+ +  GR  DMI   G+ + P E+E  +  HP V EA    VPDE 
Sbjct: 318 TGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDED 374

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E G+   +GR K+M+   G +++P E+E  +  HP VL +   G PD   G+     ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513

Query: 112 KENAKLNADDIRTFCK 127
           K  A L A  ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529

Length = 567

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E G+   +GR K+M+   G +++P E+E  +  HP VL +   G PD   G+     ++L
Sbjct: 454 EQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQL 513

Query: 344 KENAKLNADDIRTFCK 359
           K  A L A  ++ +C+
Sbjct: 514 KPGADLTAAALQAWCR 529

Length = 567

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 25/54 (46%), Positives = 28/54 (51%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
           EDGY   VGR  D+I   G  I P E+E  +  HP V EA   G PD   GE V
Sbjct: 319 EDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVV 372

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 24/74 (32%), Positives = 36/74 (48%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
            DGY    GR+ D +   GEN+    IE  +  +P+  E   Y VPD  +G++V  ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452

Query: 112 KENAKLNADDIRTF 125
              AK + D    F
Sbjct: 453 APGAKFDPDAFAEF 466

Length = 529

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 24/74 (32%), Positives = 36/74 (48%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            DGY    GR+ D +   GEN+    IE  +  +P+  E   Y VPD  +G++V  ++ L
Sbjct: 393 ADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVL 452

Query: 344 KENAKLNADDIRTF 357
              AK + D    F
Sbjct: 453 APGAKFDPDAFAEF 466

Length = 529

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE-VGISIKLKENAK 348
           ++GR+ ++   GGE I P+EIE  I  HP V + +   V D   G+  V +   ++ +++
Sbjct: 349 ILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAV---VESDSE 405

Query: 349 LNADDIRTFCKGKVSKF 365
               ++  + + K+++F
Sbjct: 406 AAVVNLAEWLQDKLARF 422

Length = 458

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 24/79 (30%), Positives = 37/79 (46%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
             GY ++  R KD+I  GGE I   ++E     HP V EA   GV   +  E   + ++L
Sbjct: 422 AYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQL 481

Query: 112 KENAKLNADDIRTFCKGKV 130
           K       ++I  +  GK+
Sbjct: 482 KPGETATREEILKYMDGKI 500

Length = 542

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
           +   EDGY    GR  DM+   G  + P E+E+ +  HP VLEA   G  DE    +   
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKA 451

Query: 340 SIKLKENAKLN---ADDIRTFCKGKVSKF 365
            + LK+  + +     +++ F K K++ +
Sbjct: 452 FVVLKDGYQPSPELETELKDFVKDKLAPY 480

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 275 RPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 334
           R   +F    DG+ +  GR  DMI   G+ + P E+E  +  HP V EA    VPDE   
Sbjct: 317 RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGL 376

Query: 335 ----------EEVGISIKLKENAKLNADDIRTFCKGKVSKF 365
                         I   L         D+  F + +++ +
Sbjct: 377 VRLKAFVVPRPGEAIQQLL-------ERDLHRFLRERLAPY 410

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 31  LFVELCLLLFP--FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 88
            F +L L  FP  + + D     EDGY  V+GR  D+I   G  +   E+EE +  HP+V
Sbjct: 450 RFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDV 509

Query: 89  LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKI 134
            E    GV DE  G+     + LK++ K++AD +       V+ +I
Sbjct: 510 AECAVVGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQI 555

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 27/63 (42%), Positives = 33/63 (52%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY   VGR  D+I   G  I P E+E  +  HP VLE    GVPD   G+ V  +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483

Query: 112 KEN 114
            + 
Sbjct: 484 TKG 486

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 27/63 (42%), Positives = 33/63 (52%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY   VGR  D+I   G  I P E+E  +  HP VLE    GVPD   G+ V  +I L
Sbjct: 424 EDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVL 483

Query: 344 KEN 346
            + 
Sbjct: 484 TKG 486

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D       GY   V R+ D     GEN+   E+EE +  HP V EA  YGV     
Sbjct: 320 FNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGT 379

Query: 102 -GEEVGISIKLKENAKLNAD 120
            G     ++ L   A  +  
Sbjct: 380 EGRAGMAALTLAPGAAFDPQ 399

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 8/99 (8%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F +RD+   + +G   ++GR+ ++   GGE I P+EIE  I  HP V + +   V D   
Sbjct: 334 FATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEF 392

Query: 102 GEE-VGISIKLKENAKLNADDIRTFCKGKV---KRKISC 136
           G+  V +   ++ +++    ++  + + K+   ++ ++ 
Sbjct: 393 GQRPVAV---VESDSEAAVVNLAEWLQDKLARFQQPVAY 428

Length = 458

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           DG   V+GR  D I  GG  + P+ +E  + THP V +   +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298

Length = 358

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
           DG   V+GR  D I  GG  + P+ +E  + THP V +   +G+PD+R+G+ V
Sbjct: 246 DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV 298

Length = 358

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY   VGR  D+I   G  + P E+E  +  HP V EA   G PD   GE V   + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391

Query: 344 KENAKLNAD---DIRTFCKGKVS 363
           +   + + +   ++ TF + ++ 
Sbjct: 392 RPGFEPSEELRRELLTFARQRLG 414

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPD 98
           FL   +          V GR+KD+II  G N YP++IE  ++     L    A A+ V  
Sbjct: 426 FLHDGELY--------VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDG 477

Query: 99  ERMGEEVGI 107
           +   E + +
Sbjct: 478 DG-EERLVV 485

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE---AYAYGVPDERMGEEVGI 339
           V GR+KD+II  G N YP++IE  ++     L    A A+ V  +   E + +
Sbjct: 434 VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDG-EERLVV 485

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  V+GR  D+I   G  +   E+EE +  HP+V E    GV DE  G+     + L
Sbjct: 473 EDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVVL 532

Query: 344 KENAKLNADDIRT 356
           K++ K++AD +  
Sbjct: 533 KDDCKIDADQLEN 545

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY   VGR  D+I   G  + P E+E  +  HP V EA   G PD   GE V   + L
Sbjct: 332 EDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSL 391

Query: 112 KENAKLNAD---DIRTFCKGK 129
           +   + + +   ++ TF + +
Sbjct: 392 RPGFEPSEELRRELLTFARQR 412

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 26/82 (31%), Positives = 39/82 (47%)

Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           S D      DG+    GR  D +   GEN+    IE  +  HP +     Y VPDER+G+
Sbjct: 384 SGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGD 443

Query: 104 EVGISIKLKENAKLNADDIRTF 125
           +V  ++ L++ A  + D    F
Sbjct: 444 QVMAALVLRDGATFDPDAFAAF 465

Length = 540

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            DG+    GR  D +   GEN+    IE  +  HP +     Y VPDER+G++V  ++ L
Sbjct: 392 ADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVL 451

Query: 344 KENAKLNADDIRTF 357
           ++ A  + D    F
Sbjct: 452 RDGATFDPDAFAAF 465

Length = 540

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           ++D     E G    +GR+ D+I   G N+YP E+E+ +   P V EA  Y   D   GE
Sbjct: 295 TKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGE 354

Query: 104 EVGISIKLKENAKLNAD--DIRTFC 126
            V    K K  +    D   +R +C
Sbjct: 355 RV----KAKVISHEEIDPVQLREWC 375

Length = 414

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 25/80 (31%), Positives = 38/80 (47%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D  V+  DG+ ++  R KD+II GGENI   E+E  +  +P VLE     +P    GE  
Sbjct: 426 DVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETP 485

Query: 106 GISIKLKENAKLNADDIRTF 125
              + L++      D +   
Sbjct: 486 CAFVVLEKGETTKEDRVDKL 505

Length = 579

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V+  DG+ ++  R KD+II GGENI   E+E  +  +P VLE     +P    GE     
Sbjct: 429 VIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAF 488

Query: 341 IKLKENAKLNADDIRTF 357
           + L++      D +   
Sbjct: 489 VVLEKGETTKEDRVDKL 505

Length = 579

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 105
           DGY  + GR KD+II  G NI+P++IE   +  P +   +A A+ +  E  GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504

Length = 579

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEV 337
           DGY  + GR KD+II  G NI+P++IE   +  P +   +A A+ +  E  GE++
Sbjct: 451 DGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKI 504

Length = 579

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 24/80 (30%), Positives = 43/80 (53%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  +V R+K++I   G  + P E+E  + +HP + +A     PDE  GE     +  
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457

Query: 344 KENAKLNADDIRTFCKGKVS 363
           +  ++L+ D++  F   +V+
Sbjct: 458 QPGSELSEDEVMQFVAKQVA 477

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E G    +GR+ D+I   G N+YP E+E+ +   P V EA  Y   D   GE V    K 
Sbjct: 303 ERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERV----KA 358

Query: 344 KENAKLNAD--DIRTFC 358
           K  +    D   +R +C
Sbjct: 359 KVISHEEIDPVQLREWC 375

Length = 414

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 24/79 (30%), Positives = 42/79 (53%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  +V R+K++I   G  + P E+E  + +HP + +A     PDE  GE     +  
Sbjct: 398 EDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVR 457

Query: 112 KENAKLNADDIRTFCKGKV 130
           +  ++L+ D++  F   +V
Sbjct: 458 QPGSELSEDEVMQFVAKQV 476

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 52  EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 100
           EDG+  +  R KD+I+  GG+NI P+ IE  ++  P + +A   G  D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 284 EDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER 332
           EDG+  +  R KD+I+  GG+NI P+ IE  ++  P + +A   G  D+R
Sbjct: 323 EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVG--DDR 370

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 25/80 (31%), Positives = 40/80 (50%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           DG+ Q+  R KD+I  GGE I   +IE     HP V EA        +  E   + +  +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481

Query: 345 ENAKLNADDIRTFCKGKVSK 364
             A++  +++  F +GKV+K
Sbjct: 482 PGAEVTREELLAFYEGKVAK 501

Length = 539

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM-GEEVGISIK 342
             GY   V R+ D     GEN+   E+EE +  HP V EA  YGV      G     ++ 
Sbjct: 330 GFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALT 389

Query: 343 LKENAKLNAD 352
           L   A  +  
Sbjct: 390 LAPGAAFDPQ 399

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  ++GR  D I   G+ + P EIE  + +HP V EA A GVPD   GE +   + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406

Query: 112 KENAKLNADDIRT 124
           K     +A     
Sbjct: 407 KPGVTPSAALEAE 419

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  ++GR  D I   G+ + P EIE  + +HP V EA A GVPD   GE +   + L
Sbjct: 347 EDGYWYILGRSDDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVL 406

Query: 344 KENAKLNADDIRT 356
           K     +A     
Sbjct: 407 KPGVTPSAALEAE 419

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 46  DQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG--------- 95
           D   L EDGY  + GR K++I    G+NI P+ IE  +   P + +    G         
Sbjct: 455 DLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVAL 514

Query: 96  -VPDERMGEEVGISIKLKENA 115
            VPD    E+   S+    +A
Sbjct: 515 IVPDFDALEKWAESLNKVISA 535

Length = 613

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+G+   VGR  +MI   G  + P E+EE       V EA A+GVPD  +G+ + + +  
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
               +L+   +   C+ ++  +
Sbjct: 468 PGGEELDRAALLAECRARLPNY 489

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           +DGY  + GR+ D+I   G  +   EIE  + +HP V EA   G+PD+  G+ +   + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546

Query: 112 KENAKLNADDIRTFCKGKVKRKISCI 137
           K+  + + D++R   +  V+++I  I
Sbjct: 547 KDGYEPD-DELRKELRKHVRKEIGPI 571

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           +++ D+ ++ EDGY   VGR  D+I   G  I P E+E  +  HP V+E+     PD   
Sbjct: 404 YITGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIR 463

Query: 102 GEEV 105
           GE V
Sbjct: 464 GEVV 467

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 280 FVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG----------V 328
             L EDGY  + GR K++I    G+NI P+ IE  +   P + +    G          V
Sbjct: 457 GELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIV 516

Query: 329 PDERMGEEVGISIKLKENA 347
           PD    E+   S+    +A
Sbjct: 517 PDFDALEKWAESLNKVISA 535

Length = 613

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E+G+   VGR  +MI   G  + P E+EE       V EA A+GVPD  +G+ + + +  
Sbjct: 408 EEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTP 467

Query: 112 KENAKLNADDIRTFCK 127
               +L+   +   C+
Sbjct: 468 PGGEELDRAALLAECR 483

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  ++GR+ D+I   G  +   E+E  + +HP V EA   G PDE  GE +   + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534

Query: 112 KENAKLNADDIRTFCKGKVKRKISCI----FIIIV 142
           K+  + + D++R   K  V+++I  I     II V
Sbjct: 535 KDGVEPS-DELRKELKKHVRKEIGPIATPDEIIFV 568

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 24/78 (30%), Positives = 38/78 (48%)

Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 112
           DG+ Q+  R KD+I  GGE I   +IE     HP V EA        +  E   + +  +
Sbjct: 422 DGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481

Query: 113 ENAKLNADDIRTFCKGKV 130
             A++  +++  F +GKV
Sbjct: 482 PGAEVTREELLAFYEGKV 499

Length = 539

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 46  DQFVLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
           D  V+  DG  ++VGR   D+I  GG  I   EIE  +  HP V EA   GVPD+ +G+ 
Sbjct: 356 DVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415

Query: 105 V 105
           +
Sbjct: 416 I 416

Length = 471

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 281 VLREDGYGQVVGRIK-DMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
           V+  DG  ++VGR   D+I  GG  I   EIE  +  HP V EA   GVPD+ +G+ +
Sbjct: 359 VVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRI 416

Length = 471

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
            DG+  +  R +D+I  GGE IY  ++E +I   P V+E    G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493

Length = 576

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
            DG+  +  R +D+I  GGE IY  ++E +I   P V+E    G PD++ GE
Sbjct: 442 RDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGE 493

Length = 576

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 32  FVELCLLLFP---FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV 88
           F++     F    + S D  +  EDGY  ++GR  D+I   G  +  +EIEE + +HP+V
Sbjct: 461 FLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSV 520

Query: 89  LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIR 123
            E    GV DE  G+   +   LKE+         
Sbjct: 521 AEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDP 555

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  ++GR  D+I   G  +  +EIEE + +HP+V E    GV DE  G+   +   L
Sbjct: 484 EDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL 543

Query: 344 KENAKLNADDIR 355
           KE+         
Sbjct: 544 KESDSAGDAHDP 555

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 108
            +G   + GR KD+II  G+N YP +IE   +    +      A GV DE+   EEV I 
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439

Query: 109 IKLKENAKLNADDIRTFCKGKVKRKIS 135
           ++ ++    + DD       K+KR ++
Sbjct: 440 VEYRQ----SLDDFTPLAL-KIKRHVN 461

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 32/62 (51%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY    GR+ D+I   GE + P E+E  +  HP V EA   G PD   GE +   + L
Sbjct: 444 EDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503

Query: 112 KE 113
           + 
Sbjct: 504 RP 505

Length = 570

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 32/62 (51%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY    GR+ D+I   GE + P E+E  +  HP V EA   G PD   GE +   + L
Sbjct: 444 EDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVAL 503

Query: 344 KE 345
           + 
Sbjct: 504 RP 505

Length = 570

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           +DG   +V RIK++I   G  + P E+E  + THP+V +A    +PDE  GE     + +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
              AK + +DI  F    V+ +
Sbjct: 489 NPKAKESEEDILNFVAANVAHY 510

Length = 546

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           +DGY  + GR+ D+I   G  +   EIE  + +HP V EA   G+PD+  G+ +   + L
Sbjct: 487 KDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTL 546

Query: 344 KENAKLNAD 352
           K+  + + +
Sbjct: 547 KDGYEPDDE 555

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)

Query: 54  GY----GQVV--GRIKDMIIRGGENIYPKEIEE 80
           GY    G+VV  GR+KD+II  G NIYP +IE 
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454

Length = 545

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 6/33 (18%)

Query: 286 GY----GQVV--GRIKDMIIRGGENIYPKEIEE 312
           GY    G+VV  GR+KD+II  G NIYP +IE 
Sbjct: 422 GYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIER 454

Length = 545

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
           ++ EDGY   VGR  D+I   G  I P E+E  +  HP V+E+     PD   GE V
Sbjct: 411 IMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVV 467

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           +DG   +V RIK++I   G  + P E+E  + THP+V +A    +PDE  GE     + +
Sbjct: 429 DDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVI 488

Query: 112 KENAKLNADDIRTFCKGKV 130
              AK + +DI  F    V
Sbjct: 489 NPKAKESEEDILNFVAANV 507

Length = 546

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
            DGY  ++GR  D+I   G  +  +EIEE I +HP V E    GV D   G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536

Length = 629

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
            DGY  ++GR  D+I   G  +  +EIEE I +HP V E    GV D   G+
Sbjct: 485 ADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQ 536

Length = 629

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 58  VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 115
           +VGRIKD++I  G N YP +IE  IQ  T   V    A  VPD+   + V I I+LK+  
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509

Query: 116 KLNADDIRTFCKGKVKRKI 134
             + + +       VKR++
Sbjct: 510 DSDEEAMDRL--RTVKREV 526

Length = 578

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMG-EEVGIS 340
            +G   + GR KD+II  G+N YP +IE   +    +      A GV DE+   EEV I 
Sbjct: 380 RNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIF 439

Query: 341 IKLKENAK 348
           ++ +++  
Sbjct: 440 VEYRQSLD 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 47.5 bits (113), Expect = 8e-06
 Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE-EVGISIK 342
           EDGY  +V R+K++I   G  I P ++E  + +HP +++A    VPD+  GE  V   ++
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVR 501

Query: 343 LKENAKLNADDIRTFCKGKVSKF 365
            ++ + L+ + +  +   +V+ +
Sbjct: 502 -RQGSTLSQEAVINYVAKQVAPY 523

Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           EDGY  +V R+K++I   G  I P ++E  + +HP +++A    VPD+  GE
Sbjct: 442 EDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGE 493

Length = 560

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  ++GR+ D+I   G  +   E+E  + +HP V EA   G PDE  GE +   + L
Sbjct: 475 EDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGEAIYAFVTL 534

Query: 344 KENAKLNADDIRTFCKGKVSK 364
           K+  + + D++R   K  V K
Sbjct: 535 KDGVEPS-DELRKELKKHVRK 554

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 99
           S D++V  +DG     GR  DM+   G  + P EIE  +  HP VLEA   GV DE
Sbjct: 388 SGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQ--THPNVLEAYAYGVPDERMGEEVGISIKLKENA 347
           +VGRIKD++I  G N YP +IE  IQ  T   V    A  VPD+   + V I I+LK+  
Sbjct: 454 IVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDGTEKLVAI-IELKKRG 509

Query: 348 KLNADDIRTFC 358
             + + +    
Sbjct: 510 DSDEEAMDRLR 520

Length = 578

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 56  GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 104
           G++   GR KDMII  G N Y  EIE  ++  P V  ++  A  V D   G +
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 288 GQVV--GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY--AYGVPDERMGEE 336
           G++   GR KDMII  G N Y  EIE  ++  P V  ++  A  V D   G +
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVEPSFTAACAVRDAGSGTD 494

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 279 QFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 331
           ++V  +DG     GR  DM+   G  + P EIE  +  HP VLEA   GV DE
Sbjct: 391 KYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDE 443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 51  REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAYGVPDERMGEEVGI 107
             DG   V GR+KDM+I  G N+YP++IE+ ++    V+      A+ V  +  GEE GI
Sbjct: 439 LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQ--GEE-GI 495

Query: 108 SI 109
            I
Sbjct: 496 GI 497

Length = 4334

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 283 REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL---EAYAYGVPDERMGEEVGI 339
             DG   V GR+KDM+I  G N+YP++IE+ ++    V+      A+ V  +  GEE GI
Sbjct: 439 LRDGELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVVRKGRVAAFAVNHQ--GEE-GI 495

Query: 340 SI 341
            I
Sbjct: 496 GI 497

Length = 4334

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
             EDGY   VGR  D+       I P E+E  +  HP V EA     PD          I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377

Query: 342 KLKENAKLNAD---DIRTFCKGKVSKF 365
            LK   + + +   ++    + +++ +
Sbjct: 378 VLKPGYEPSRELALELFAHVRERLAPY 404

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
             EDGY   VGR  D+       I P E+E  +  HP V EA     PD          I
Sbjct: 318 RDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYI 377

Query: 110 KLKENAKLNAD---DIRTFCKG-----KVKRKI 134
            LK   + + +   ++    +      K  R+I
Sbjct: 378 VLKPGYEPSRELALELFAHVRERLAPYKRIRRI 410

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 105
           DG   + GRI D+I+  G N YP++IE  + +  P V   Y  A+ VP E     V
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543

Length = 612

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFI-QTHPNVLEAY--AYGVPDERMGEEV 337
           DG   + GRI D+I+  G N YP++IE  + +  P V   Y  A+ VP E     V
Sbjct: 488 DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLV 543

Length = 612

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG1176|consensus	537		100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
KOG1177|consensus	596		100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.97
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.97
PLN02574	560	4-coumarate--CoA ligase-like	99.97
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.97
PLN02614	666	long-chain acyl-CoA synthetase	99.97
PLN02860	563	o-succinylbenzoate-CoA ligase	99.97
PLN02654	666	acetate-CoA ligase	99.97
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.97
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.96
PLN03051	499	acyl-activating enzyme; Provisional	99.96
PLN02736	651	long-chain acyl-CoA synthetase	99.96
KOG1175|consensus	626		99.96
PRK09274	552	peptide synthase; Provisional	99.96
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.96
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.96
PRK07529	632	AMP-binding domain protein; Validated	99.96
PRK00174	637	acetyl-CoA synthetase; Provisional	99.96
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.96
PRK07788	549	acyl-CoA synthetase; Validated	99.96
PLN02246	537	4-coumarate--CoA ligase	99.96
PTZ00342	746	acyl-CoA synthetase; Provisional	99.96
PRK06060	705	acyl-CoA synthetase; Validated	99.96
PRK04319	570	acetyl-CoA synthetase; Provisional	99.96
PLN02330	546	4-coumarate--CoA ligase-like 1	99.96
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.96
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.96
PRK07638	487	acyl-CoA synthetase; Validated	99.96
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.96
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.96
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.96
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.96
PRK09088	488	acyl-CoA synthetase; Validated	99.96
PRK06839	496	acyl-CoA synthetase; Validated	99.96
PRK13382	537	acyl-CoA synthetase; Provisional	99.96
PRK07787	471	acyl-CoA synthetase; Validated	99.96
PRK06145	497	acyl-CoA synthetase; Validated	99.96
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.95
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.95
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.95
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.95
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.95
PRK05852	534	acyl-CoA synthetase; Validated	99.95
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.95
PRK12583	558	acyl-CoA synthetase; Provisional	99.95
PRK08315	559	AMP-binding domain protein; Validated	99.95
PTZ00216	700	acyl-CoA synthetase; Provisional	99.95
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.95
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.95
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.95
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.95
PRK07514	504	malonyl-CoA synthase; Validated	99.95
PRK06178	567	acyl-CoA synthetase; Validated	99.95
PRK05857	540	acyl-CoA synthetase; Validated	99.95
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.95
PRK06164	540	acyl-CoA synthetase; Validated	99.95
KOG1256|consensus	691		99.95
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.95
PRK13390	501	acyl-CoA synthetase; Provisional	99.95
PRK07867	529	acyl-CoA synthetase; Validated	99.95
PRK07470	528	acyl-CoA synthetase; Validated	99.95
PRK08316	523	acyl-CoA synthetase; Validated	99.95
PRK13388	540	acyl-CoA synthetase; Provisional	99.95
PRK12467	3956	peptide synthase; Provisional	99.95
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.95
PRK12316	5163	peptide synthase; Provisional	99.95
PRK12316	5163	peptide synthase; Provisional	99.95
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.95
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.95
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.95
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.94
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.94
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.94
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.94
KOG1176|consensus	537		99.94
PRK13383	516	acyl-CoA synthetase; Provisional	99.94
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.94
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.94
PLN03102	579	acyl-activating enzyme; Provisional	99.94
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.94
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.94
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.94
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.94
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK06188	524	acyl-CoA synthetase; Validated	99.94
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.93
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.93
PRK13391	511	acyl-CoA synthetase; Provisional	99.93
PRK12467	3956	peptide synthase; Provisional	99.93
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK05691	4334	peptide synthase; Validated	99.93
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.93
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.93
PRK07798	533	acyl-CoA synthetase; Validated	99.93
PLN02479	567	acetate-CoA ligase	99.93
PRK08162	545	acyl-CoA synthetase; Validated	99.93
PRK05691	4334	peptide synthase; Validated	99.93
PRK07868	994	acyl-CoA synthetase; Validated	99.93
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.93
PLN03052	728	acetate--CoA ligase; Provisional	99.93
PRK09192	579	acyl-CoA synthetase; Validated	99.92
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.92
PRK12582	624	acyl-CoA synthetase; Provisional	99.92
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.92
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.92
KOG1180|consensus	678		99.91
PRK05850	578	acyl-CoA synthetase; Validated	99.91
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.88
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.88
PRK08308	414	acyl-CoA synthetase; Validated	99.88
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.86
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.86
KOG1177|consensus	596		99.85
KOG1175|consensus	626		99.84
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.82
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.81
PLN03051	499	acyl-activating enzyme; Provisional	99.81
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.81
PLN02654	666	acetate-CoA ligase	99.81
PRK07529	632	AMP-binding domain protein; Validated	99.8
PLN02574	560	4-coumarate--CoA ligase-like	99.8
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.79
PRK07788	549	acyl-CoA synthetase; Validated	99.79
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.78
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.77
PLN03102	579	acyl-activating enzyme; Provisional	99.77
PRK00174	637	acetyl-CoA synthetase; Provisional	99.77
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.77
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.77
PRK13382	537	acyl-CoA synthetase; Provisional	99.76
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.76
PRK07867	529	acyl-CoA synthetase; Validated	99.76
PRK05852	534	acyl-CoA synthetase; Validated	99.76
PRK06060	705	acyl-CoA synthetase; Validated	99.76
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.75
PRK09274	552	peptide synthase; Provisional	99.75
PRK06839	496	acyl-CoA synthetase; Validated	99.75
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.75
PLN02860	563	o-succinylbenzoate-CoA ligase	99.75
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.75
PRK09088	488	acyl-CoA synthetase; Validated	99.75
PRK04319	570	acetyl-CoA synthetase; Provisional	99.74
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.74
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.74
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.74
PRK05857	540	acyl-CoA synthetase; Validated	99.74
PRK06145	497	acyl-CoA synthetase; Validated	99.74
PLN02330	546	4-coumarate--CoA ligase-like 1	99.74
PLN02246	537	4-coumarate--CoA ligase	99.73
PRK13388	540	acyl-CoA synthetase; Provisional	99.73
PRK07638	487	acyl-CoA synthetase; Validated	99.73
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.73
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.73
PRK07868	994	acyl-CoA synthetase; Validated	99.73
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.73
PRK07470	528	acyl-CoA synthetase; Validated	99.73
PRK13390	501	acyl-CoA synthetase; Provisional	99.73
PRK13383	516	acyl-CoA synthetase; Provisional	99.72
PRK06164	540	acyl-CoA synthetase; Validated	99.72
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.72
KOG1179|consensus	649		99.72
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.72
PRK12583	558	acyl-CoA synthetase; Provisional	99.72
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.72
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.72
PRK09188	365	serine/threonine protein kinase; Provisional	99.72
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.72
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.72
PRK06178	567	acyl-CoA synthetase; Validated	99.71
PRK08316	523	acyl-CoA synthetase; Validated	99.71
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.7
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.7
PLN03052	728	acetate--CoA ligase; Provisional	99.7
PRK06188	524	acyl-CoA synthetase; Validated	99.7
PRK08315	559	AMP-binding domain protein; Validated	99.7
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.7
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.7
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.69
PLN02614	666	long-chain acyl-CoA synthetase	99.69
PRK07787	471	acyl-CoA synthetase; Validated	99.69
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.69
PRK07514	504	malonyl-CoA synthase; Validated	99.69
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.69
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.69
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.69
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.69
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.68
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.68
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.68
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.68
PRK08162	545	acyl-CoA synthetase; Validated	99.68
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.68
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.68
PRK09188	365	serine/threonine protein kinase; Provisional	99.68
PLN02479	567	acetate-CoA ligase	99.68
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.67
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.67
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.67
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.66
PRK05850	578	acyl-CoA synthetase; Validated	99.66
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.66
PLN02736	651	long-chain acyl-CoA synthetase	99.65
PRK13391	511	acyl-CoA synthetase; Provisional	99.65
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.64
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.64
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.64
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.63
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.63
PRK09192	579	acyl-CoA synthetase; Validated	99.63
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.62
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.62
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.61
PTZ00342	746	acyl-CoA synthetase; Provisional	99.61
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.61
PRK08308	414	acyl-CoA synthetase; Validated	99.6
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.59
PRK07798	533	acyl-CoA synthetase; Validated	99.59
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.58
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.56
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.56
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.55
KOG1256|consensus	691		99.52
PTZ00216	700	acyl-CoA synthetase; Provisional	99.51
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.5
PRK12582	624	acyl-CoA synthetase; Provisional	99.49
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.45
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.36
KOG1180|consensus	678		99.35
KOG1179|consensus	649		99.35
PTZ00297	1452	pantothenate kinase; Provisional	99.33
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.25
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.23
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.16
KOG1178|consensus	1032		99.09
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	98.75
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.71
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	98.56
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.5
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.39
KOG1178|consensus	1032		98.34
PTZ00297	1452	pantothenate kinase; Provisional	98.13
KOG3628|consensus	1363		98.05
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	97.96
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	97.87
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	97.3
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.8
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	96.7
KOG3628|consensus	1363		95.97
PLN02249	597	indole-3-acetic acid-amido synthetase	94.73
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	93.4
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	91.32
PLN02247	606	indole-3-acetic acid-amido synthetase	89.07
PLN02620	612	indole-3-acetic acid-amido synthetase	87.37
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	86.93

>KOG1176|consensus

Probab=100.00  E-value=6.7e-41  Score=321.41  Aligned_cols=188  Identities=24%  Similarity=0.260  Sum_probs=165.4

Q ss_pred             cCcccchhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046        175 IDPSLTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~  253 (365)
                      .+....+...++...+... ||+||++...+..........+++|+++++++.+|.++.+....++  +.||| ++|+++
T Consensus       313 ~~~~~~~~~~l~~~~v~q~-YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~--~~GEI~vrg~~i  389 (537)
T KOG1176|consen  313 PATLEKVKERLPNVTVIQG-YGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPN--QTGEICVRGPQV  389 (537)
T ss_pred             HHHHHHHHHhCCCceEEEe-eccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCC--CceEEEEECccc
Confidence            3333455566775666677 9999998666644444335789999999998888888666655554  56888 999999


Q ss_pred             cccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCC
Q psy13046        254 MKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  333 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  333 (365)
                      |+|||+||++|++.|+++|||+|||+|++|+||+|+|++|.||+||.+|++|+|.|||++|.+||.|.||||++.+|+..
T Consensus       390 mkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~  469 (537)
T KOG1176|consen  390 MKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVW  469 (537)
T ss_pred             chhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEccccccc
Confidence            99999999999999997799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        334 GEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       334 g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |+.++|+|+++++..+++++|+++|+++|++|
T Consensus       470 Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y  501 (537)
T KOG1176|consen  470 GETPAAFVVLKKGSTLTEKDIIEYVRKKLPAY  501 (537)
T ss_pred             CCcceEEEEecCCCcCCHHHHHHHHHhhCChh
Confidence            99999999999999999999999999999976

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7e-35  Score=286.77  Aligned_cols=184  Identities=28%  Similarity=0.370  Sum_probs=161.3

Q ss_pred             cchhccCCCCccccccCCccccccccccccccc-ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccc
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFE-CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKS  256 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~g  256 (365)
                      .++...++...+... ||+||+++.++...... ....+++|+|+|+++++|+|++++.+.+  +..||| ++||++|.|
T Consensus       309 ~~~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p--g~vGei~irgp~v~~G  385 (534)
T COG0318         309 ERFEERFGPIAILEG-YGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP--GEVGEIWVRGPNVMKG  385 (534)
T ss_pred             HHHHHHhCCCceEEe-ecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC--CCceEEEEECchhhhh
Confidence            344446666678888 99999998776544433 2466777999999999999988875555  568998 999999999


Q ss_pred             ccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcE
Q psy13046        257 KRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  336 (365)
Q Consensus       257 Y~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  336 (365)
                      ||++|+.|++.|+.+|||+|||+|++|++|+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++++++.+|+.
T Consensus       386 Y~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~  465 (534)
T COG0318         386 YWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGER  465 (534)
T ss_pred             hcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCce
Confidence            99999999998885699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEcCC--CCCCHHHHHHHHHcccCCC
Q psy13046        337 VGISIKLKEN--AKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       337 ~~a~v~~~~~--~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++|+|+++++  ...+.++|+++|+++++.|
T Consensus       466 ~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~  496 (534)
T COG0318         466 VVAVVVLKPGGDAELTAEELRAFLRKRLALY  496 (534)
T ss_pred             EEEEEEEcCCCCCCCCHHHHHHHHHhhhhcc
Confidence            9999999876  3457899999999988875

>KOG1177|consensus

Probab=100.00  E-value=2.5e-34  Score=260.43  Aligned_cols=176  Identities=32%  Similarity=0.452  Sum_probs=157.2

Q ss_pred             CCccccccCCccccccccccc--ccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVV--QSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~--~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      -..+..+ ||+||++++.+..  .+.......++|+.+++.+..|+|.++..++.+  ..||+ +||++.|+|||++++.
T Consensus       376 m~~i~v~-YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~~k  452 (596)
T KOG1177|consen  376 MKDIAVA-YGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLG--TKGELLIRGYSTMLGYWGEEEK  452 (596)
T ss_pred             ceeeEEE-eeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccC--CCceEEEEechhheeecCCccc
Confidence            3445666 9999999988733  344447788999999999999999777666655  44887 9999999999999999


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      |.++...|.||+|||.|.+|++|+++|+||.+|||+.+|++|+|.|||+.|.+||.|.++.||+++++..|+.++|+|-+
T Consensus       453 T~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRL  532 (596)
T KOG1177|consen  453 TKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRL  532 (596)
T ss_pred             chhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEe
Confidence            99999889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC--CCHHHHHHHHHcccCCC
Q psy13046        344 KENAK--LNADDIRTFCKGKVSKF  365 (365)
Q Consensus       344 ~~~~~--~~~~~l~~~~~~~l~~y  365 (365)
                      ..+.+  .+.++|+++|+.+|+.|
T Consensus       533 qe~~e~~~t~E~lKa~Ck~klaHF  556 (596)
T KOG1177|consen  533 QEGAEGKTTAETLKAMCKGKLAHF  556 (596)
T ss_pred             eccccccccHHHHHHHHhcccccc
Confidence            87655  58899999999998765

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.97  E-value=4.1e-32  Score=259.60  Aligned_cols=178  Identities=22%  Similarity=0.132  Sum_probs=147.1

Q ss_pred             chhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--Cccccc
Q psy13046        180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKS  256 (365)
Q Consensus       180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~g  256 (365)
                      +.+.+..+..+... ||+||++........ ...++++ |+|+||++++|+|+++++++++.   |++ ++.  |+++++
T Consensus       308 ~w~~~~~g~~i~d~-~gqTEtg~~~~~~~~-~~~~g~~-g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~~~~p~~~~~  381 (528)
T COG0365         308 EWFYSALGVWILDI-YGQTETGMGFIAGRP-PVKNGSS-GLPLPGYAVRRVDDEGNPVPPGV---GELVVRLPWPGMALT  381 (528)
T ss_pred             HHHHHHhCCCEecc-ccccccCccccCCCC-CcCCCCC-CCCCCCceeEEECCCCCcCCCCc---eEEEEeCCCchhhhh
Confidence            33445566888888 999999844443322 3345556 99999999999999866665553   887 665  499999


Q ss_pred             ccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcE
Q psy13046        257 KRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  336 (365)
Q Consensus       257 Y~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  336 (365)
                      ||+||+.+.+++- +.||.|||.+++|+||+++|+||.||+||+.|+||+|.|||++|.+||.|.||+||+.+++..|+.
T Consensus       382 ~w~d~er~~~~y~-~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~  460 (528)
T COG0365         382 YWNDPERYKEAYF-GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQI  460 (528)
T ss_pred             hhCCHHHHHHHHh-hceeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcE
Confidence            9999999988886 349999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEcCCCCCC--HHHHHHHHHcccCC
Q psy13046        337 VGISIKLKENAKLN--ADDIRTFCKGKVSK  364 (365)
Q Consensus       337 ~~a~v~~~~~~~~~--~~~l~~~~~~~l~~  364 (365)
                      ++|||+++++...+  .++|++++++.+.+
T Consensus       461 v~afVvL~~g~~~~~L~~ei~~~vr~~~~~  490 (528)
T COG0365         461 VLAFVVLAAGVEPNELAEEIRRHVARNIGP  490 (528)
T ss_pred             EEEEEEecCCCChHHHHHHHHHHHHhccCc
Confidence            99999999876544  24566666555443

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.97  E-value=1e-32  Score=267.17  Aligned_cols=261  Identities=18%  Similarity=0.144  Sum_probs=181.5

Q ss_pred             EEEeec--CcEEE-ECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcC-CCCCCHHHHHHHHHhhhhh
Q psy13046         57 QVVGRI--KDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE-NAKLNADDIRTFCKGKVKR  132 (365)
Q Consensus        57 ~i~GR~--~d~i~-~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~-~~~~~~~~L~~~l~~~l~~  132 (365)
                      ++..|.  -.+.. .+....+......++..+..++++.+++||+  .-+.+...+..+- ........++.+..+....
T Consensus       244 Hi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPR--vwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~  321 (613)
T COG1022         244 HIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPR--VWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK  321 (613)
T ss_pred             HHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechH--HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            455664  22333 4445667888899999999999999999998  2222111111110 1111122244443322111


Q ss_pred             ccc--------ceEEE-eeeEEeeeccccccCceeEEEeeeeeeeeeeeeccCcccchhccCCCCccccccCCccccccc
Q psy13046        133 KIS--------CIFII-IVRISCECILLKYRSASTVWYSNVLLFSQVFLVVIDPSLTIHTVWPGQSYFPCCCGKLRIHPF  203 (365)
Q Consensus       133 ~~~--------~~~~~-~~~~~~~~~l~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  203 (365)
                      ...        ..... ...+.+.+.-...| |++    ....++.+   ++.++...+-+--|..+... ||+|||++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri----~~~~sGGa---~l~~~~~~f~~~lGi~i~eG-YGlTEts~~  392 (613)
T COG1022         322 KISRALLGGGPLSWLLVADRLVFRKIRDALG-GRI----RYALSGGA---PLSPELLHFFRSLGIPILEG-YGLTETSAV  392 (613)
T ss_pred             HHHhhhcccCCcchhhhhhHHHHHHHHHHhC-CcE----EEEEecCC---cCCHHHHHHHHHcCCCeEEE-ecccccccc
Confidence            000        00000 00011111122333 455    22222222   35556666677778889999 999999998


Q ss_pred             ccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccccccCCCCeeecCceEEE
Q psy13046        204 LEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVL  282 (365)
Q Consensus       204 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~  282 (365)
                      ++..++. ....+++|+|+|+++++|+|+            ||+ +|||++|+|||++|++|+++|++||||+|||+|.+
T Consensus       393 ~~v~~~~-~~~~gtvG~p~p~~evKI~d~------------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~  459 (613)
T COG1022         393 VSVNPPD-RFVLGTVGKPLPGIEVKIADD------------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGEL  459 (613)
T ss_pred             eEEcccc-CcccCCcCCcCCCceEEEccC------------ceEEEecchhcchhcCChHHHhhhccccCCcccCceeEE
Confidence            8866543 367888999999999999984            888 99999999999999999999999999999999999


Q ss_pred             ccCCcEEEEeecCceEE-eCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcC
Q psy13046        283 REDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  345 (365)
Q Consensus       283 ~~~G~l~i~GR~~d~i~-~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  345 (365)
                      |++|+|.|+||+||+|| .+|++|.|+.||+.+.++|.|.+++|++ .+..   .+.|.|+++.
T Consensus       460 d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~---~~~AlIvp~~  519 (613)
T COG1022         460 DEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKK---FLVALIVPDF  519 (613)
T ss_pred             cCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCc---ceEEEEeCCH
Confidence            99999999999999999 7999999999999999999999999999 3332   4889888764

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.97  E-value=6.8e-31  Score=260.56  Aligned_cols=183  Identities=18%  Similarity=0.228  Sum_probs=157.2

Q ss_pred             hhccCCCCccccccCCccccccccccccc-ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQS-FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +...+++..+.+. ||+||++.+++.... .......++|+|+|+++++|+|++.+...+ .+..||+ ++|++++.|||
T Consensus       339 ~~~~~~~~~v~~~-YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~-~g~~Gei~v~g~~~~~GY~  416 (560)
T PLN02574        339 FVQTLPHVDFIQG-YGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLP-PGNCGELWIQGPGVMKGYL  416 (560)
T ss_pred             HHHHCCCCcEEec-ccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCC-CCCCeEEEEECcchhhhhc
Confidence            3455677888888 999999865542211 122456789999999999999965443333 3567898 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++++.|++.|..+|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++
T Consensus       417 ~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~  496 (560)
T PLN02574        417 NNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPV  496 (560)
T ss_pred             CChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceE
Confidence            99999998888799999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++|+.+++...+.++++++++++|++|
T Consensus       497 a~v~~~~~~~~~~~~l~~~~~~~l~~~  523 (560)
T PLN02574        497 AFVVRRQGSTLSQEAVINYVAKQVAPY  523 (560)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhccCc
Confidence            999988776677899999999999876

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.97  E-value=6.8e-31  Score=264.17  Aligned_cols=179  Identities=16%  Similarity=0.036  Sum_probs=148.7

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecC---cccccccC
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQT---MAMKSKRG  259 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~---~~~~gY~~  259 (365)
                      ...+..+.+. ||+||++..............+++|+|+|+++++|+|+++.+++.  +..||+ +++|   +++.|||+
T Consensus       402 ~~~g~~i~~~-yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~--ge~GEl~v~~p~~p~~~~gy~~  478 (647)
T PTZ00237        402 NKLKIKSSRG-YGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNV--NEIGEVAFKLPMPPSFATTFYK  478 (647)
T ss_pred             HhcCCCEEee-echHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCC--CCceEEEEeccCCchhhCceeC
Confidence            3346778888 999999755442222122345789999999999999987776643  467898 8875   89999999


Q ss_pred             CCcccccccCC-CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        260 LPARVKAPDRK-KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       260 ~~~~~~~~~~~-~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      +++.+.+.|.. +|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..|+.++
T Consensus       479 ~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~  558 (647)
T PTZ00237        479 NDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPI  558 (647)
T ss_pred             CHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEE
Confidence            99999887754 79999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCC---CCCCH----HHHHHHHHcccCCC
Q psy13046        339 ISIKLKEN---AKLNA----DDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~---~~~~~----~~l~~~~~~~l~~y  365 (365)
                      |||+++++   ...+.    ++|+++++++|++|
T Consensus       559 a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~  592 (647)
T PTZ00237        559 GLLVLKQDQSNQSIDLNKLKNEINNIITQDIESL  592 (647)
T ss_pred             EEEEeccCccccCCCHHHHHHHHHHHHHhhcCcc
Confidence            99998843   22333    46678888888875

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.97  E-value=1.1e-30  Score=263.17  Aligned_cols=160  Identities=11%  Similarity=-0.067  Sum_probs=131.4

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEE-cccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVL-YIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +...+++..+.+. ||+||++..++..........+++|+|+|+++++|+| ++++....+.+..||| ++||++|.|||
T Consensus       405 ~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~  483 (666)
T PLN02614        405 FLRVVACCHVLQG-YGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYY  483 (666)
T ss_pred             HHHHhcCCCEEee-CchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccccc
Confidence            3344556788888 9999997654433222223467899999999999998 3432222234678998 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEe-CceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      ++|+.|+++|. +|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+++|++.....   .+
T Consensus       484 ~~pe~T~~~f~-dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l  559 (666)
T PLN02614        484 KREDLTKEVLI-DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FL  559 (666)
T ss_pred             CCHHHhhhhhc-cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eE
Confidence            99999999996 999999999999999999999999999995 79999999999999999999999999986432   48


Q ss_pred             EEEEEEcC
Q psy13046        338 GISIKLKE  345 (365)
Q Consensus       338 ~a~v~~~~  345 (365)
                      +|+|+++.
T Consensus       560 ~alvv~~~  567 (666)
T PLN02614        560 VAIANPNQ  567 (666)
T ss_pred             EEEEeCCH
Confidence            89988753

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.97  E-value=4.6e-30  Score=254.80  Aligned_cols=177  Identities=22%  Similarity=0.325  Sum_probs=149.8

Q ss_pred             hhccCCCCccccccCCccccccccccccc-c---------------------cccccceeeEeecCeeEEEEEcccceec
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQS-F---------------------ECRRYQVVLHIFEHLFLELVLYIVNSVL  238 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~-~---------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~  238 (365)
                      +...+++..+++. ||+||++..++.... .                     ......++|+|+|+++++|+|++     
T Consensus       308 ~~~~~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----  381 (563)
T PLN02860        308 AKKLFPNAKLFSA-YGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----  381 (563)
T ss_pred             HHHhcCCCceecC-CCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----
Confidence            3345678888888 999999754432110 0                     01123478999999999999864     


Q ss_pred             cCCceeeEE-eecCcccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcC
Q psy13046        239 YNFKWINQV-SSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  317 (365)
Q Consensus       239 ~~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~  317 (365)
                        .+..||+ ++|++++.|||++|+.+++.|..+|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+|
T Consensus       382 --~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~  459 (563)
T PLN02860        382 --SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQH  459 (563)
T ss_pred             --CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhC
Confidence              3567998 9999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEeecCCCCCcEEEEEEEEcCCC--------------CCCHHHHHHHHHc-ccCCC
Q psy13046        318 PNVLEAYAYGVPDERMGEEVGISIKLKENA--------------KLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       318 ~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~--------------~~~~~~l~~~~~~-~l~~y  365 (365)
                      |+|.+++|++.+++..++.++|+|+++++.              ..+.+++++++++ +|++|
T Consensus       460 p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~  522 (563)
T PLN02860        460 PGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRF  522 (563)
T ss_pred             CCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCccccc
Confidence            999999999999998899999999987652              3456789999987 58876

>PLN02654 acetate-CoA ligase

Probab=99.97  E-value=3.4e-30  Score=259.98  Aligned_cols=175  Identities=15%  Similarity=0.095  Sum_probs=148.2

Q ss_pred             CccccccCCccccccccccccc-ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--CcccccccCCCcc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQS-FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKRGLPAR  263 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~~~  263 (365)
                      ..+.+. ||+||++........ ......+++|+|+||++++|+|+++++++.  +..||+ +++  |++++|||++++.
T Consensus       426 ~~i~~~-yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~--~~~Gel~v~~~~p~~~~gy~~~~~~  502 (666)
T PLN02654        426 CPISDT-WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEG--ECSGYLCVKKSWPGAFRTLYGDHER  502 (666)
T ss_pred             Cceecc-ccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCC--CCceEEEEcCCCchhhhhhcCChHH
Confidence            456777 999999765543222 112456789999999999999988876643  357887 777  8999999999998


Q ss_pred             cccccC--CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        264 VKAPDR--KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       264 ~~~~~~--~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+.+.  .+|||+|||++++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++|||
T Consensus       503 ~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~V  582 (666)
T PLN02654        503 YETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFV  582 (666)
T ss_pred             HHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEE
Confidence            876652  279999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      +++++...+.   ++|+++++++|++|
T Consensus       583 vl~~~~~~~~~l~~~l~~~~~~~L~~~  609 (666)
T PLN02654        583 TLVEGVPYSEELRKSLILTVRNQIGAF  609 (666)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHhCCCC
Confidence            9998765543   47888999998876

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.97  E-value=2.5e-30  Score=260.67  Aligned_cols=155  Identities=8%  Similarity=-0.110  Sum_probs=127.5

Q ss_pred             CCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQTMAMKSKRGLPA  262 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~  262 (365)
                      ++...+.+. ||+||+++.++..........+++|+|+|+++++|+|. +.+......++.||+ ++||++|.|||++|+
T Consensus       406 ~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe  484 (660)
T PLN02861        406 TSCSVLSQG-YGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQD  484 (660)
T ss_pred             HcCCCeeEe-cchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHH
Confidence            344467777 99999976655332222234679999999999999983 222111123456898 999999999999999


Q ss_pred             ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEe-CceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      .|+++|. +|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+.   ++.++|+|
T Consensus       485 ~T~~~f~-dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~v  560 (660)
T PLN02861        485 LTEEVLI-DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSF---ESFLVAVV  560 (660)
T ss_pred             HHHhhhh-ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCC---cceeEEEE
Confidence            9999996 899999999999999999999999999996 799999999999999999999999999863   35789999


Q ss_pred             EEc
Q psy13046        342 KLK  344 (365)
Q Consensus       342 ~~~  344 (365)
                      +++
T Consensus       561 v~~  563 (660)
T PLN02861        561 VPD  563 (660)
T ss_pred             EcC
Confidence            875

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=1.5e-30  Score=231.01  Aligned_cols=174  Identities=22%  Similarity=0.205  Sum_probs=154.0

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEeec-CeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFE-HLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      .-.|..+... +||.|-....+...+.......+-|+|+. .-+++|+|.+++++.++  +.|++ ++||..++|||+.|
T Consensus       327 ~~lgC~LQQV-FGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pG--E~G~LltRGPYTirGYyrap  403 (542)
T COG1021         327 AVLGCQLQQV-FGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPG--EVGELLTRGPYTIRGYYRAP  403 (542)
T ss_pred             hhhCchHHHH-hhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCC--CcceeeecCCeeeeeeccCc
Confidence            3445567777 99999765555444544466678899986 78999999999888765  78887 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.++++|+.+|||+|||+.++|+|||+.+.||.||+||.+|++|..+|||+.|+.||.|.+|++|+.+++..|+..+|||
T Consensus       404 ~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfi  483 (542)
T COG1021         404 EHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFI  483 (542)
T ss_pred             hhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcc
Q psy13046        342 KLKENAKLNADDIRTFCKGK  361 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~  361 (365)
                      +.++.. .+..+|+++|+++
T Consensus       484 v~~~~~-~~~~qlr~~L~~~  502 (542)
T COG1021         484 VVKEPP-LRAAQLRRFLRER  502 (542)
T ss_pred             EecCCC-CCHHHHHHHHHHc
Confidence            998753 7788999999875

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.96  E-value=1.1e-29  Score=248.37  Aligned_cols=172  Identities=15%  Similarity=0.053  Sum_probs=134.9

Q ss_pred             CccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc--cccccCCCccc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA--MKSKRGLPARV  264 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~--~~gY~~~~~~~  264 (365)
                      ..+.+. ||+||++..+...........+++|+|.++++++|+|+++++++.+....||+ ++||.+  +.|||+++ .+
T Consensus       264 ~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~  341 (499)
T PLN03051        264 KPVIEY-CGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD  341 (499)
T ss_pred             ceeEee-eccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc
Confidence            567777 99999865433221111234568999999999999998887765543357898 999977  58999765 34


Q ss_pred             ccccCC--------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHc-CCCeeEEEEEeecCCCCC-
Q psy13046        265 KAPDRK--------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-  334 (365)
Q Consensus       265 ~~~~~~--------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~v~~~~~~~~g-  334 (365)
                      +..++.        ..||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+ ||+|.+|+|++++++..| 
T Consensus       342 ~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~  421 (499)
T PLN03051        342 KVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGP  421 (499)
T ss_pred             ceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCc
Confidence            332221        1279999999999999999999999999999999999999999996 999999999999999888 


Q ss_pred             cEEEEEE---EEcCCC-CCCHHHHHHHHHcc
Q psy13046        335 EEVGISI---KLKENA-KLNADDIRTFCKGK  361 (365)
Q Consensus       335 ~~~~a~v---~~~~~~-~~~~~~l~~~~~~~  361 (365)
                      +.++|+|   +++++. ..+.++++++|+++
T Consensus       422 ~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~  452 (499)
T PLN03051        422 ELLVIFLVLGEEKKGFDQARPEALQKKFQEA  452 (499)
T ss_pred             eEEEEEEEcceecccccccchHHHHHHHHHH
Confidence            6899998   777654 35667777776543

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.96  E-value=3.7e-30  Score=259.43  Aligned_cols=156  Identities=12%  Similarity=-0.004  Sum_probs=130.0

Q ss_pred             CCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEccccee--ccCCceeeEE-eecCcccccccCCC
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSV--LYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~--~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ..+..+.+. ||+||+++.++..... ....+++|+|+|+++++|+|.++...  .....+.||+ ++||++|.|||++|
T Consensus       399 ~~g~~~~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~  476 (651)
T PLN02736        399 CFGGRVLEG-YGMTETSCVISGMDEG-DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDE  476 (651)
T ss_pred             HhCCCeEEE-echHHhchheeccCCC-CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCH
Confidence            346678888 9999997665533322 24567899999999999998433211  1122346898 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEe-CceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      +.|+++|.++|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.   ..++.++|+
T Consensus       477 ~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~  553 (651)
T PLN02736        477 VQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAV  553 (651)
T ss_pred             HHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEE
Confidence            999999988999999999999999999999999999996 7999999999999999999999999983   246789999


Q ss_pred             EEEcC
Q psy13046        341 IKLKE  345 (365)
Q Consensus       341 v~~~~  345 (365)
                      |++++
T Consensus       554 vv~~~  558 (651)
T PLN02736        554 VVVDP  558 (651)
T ss_pred             EEeCH
Confidence            99875

>KOG1175|consensus

Probab=99.96  E-value=2.9e-29  Score=240.88  Aligned_cols=181  Identities=18%  Similarity=0.137  Sum_probs=151.6

Q ss_pred             ccCCCC-ccccccCCccccccccccccccc-ccccceeeEeecCeeEEEEEcccceeccCCceeeEE---eecC-ccccc
Q psy13046        183 TVWPGQ-SYFPCCCGKLRIHPFLEVVQSFE-CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV---SSQT-MAMKS  256 (365)
Q Consensus       183 ~~~~~~-~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei---~~g~-~~~~g  256 (365)
                      .+..+. .+... ||+||++..+....... ....++.+.|++++.+.|+|+++++..+.. ..|++   -..| +++++
T Consensus       380 ~~~~~~~pv~e~-~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~  457 (626)
T KOG1175|consen  380 KRVTGLDPIYET-YGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRT  457 (626)
T ss_pred             HHhcCccchhhc-eeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCcccccc
Confidence            334444 47777 99999988777544443 467788999999999999999888887765 66665   3345 89999


Q ss_pred             ccCCCcccccccCC--CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046        257 KRGLPARVKAPDRK--KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       257 Y~~~~~~~~~~~~~--~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      ||+|++....++-.  .|+|.|||.+++|+|||++++||.||+||++|+|++++|||+++.+||.|.|++||+.+++.+|
T Consensus       458 ~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~g  537 (626)
T KOG1175|consen  458 LWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKG  537 (626)
T ss_pred             ccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCC
Confidence            99999955444433  7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEEcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        335 EEVGISIKLKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       335 ~~~~a~v~~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      |.+.|||+++++....+   ++|++++|+.+++|
T Consensus       538 e~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~  571 (626)
T KOG1175|consen  538 EVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPY  571 (626)
T ss_pred             eEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcc
Confidence            99999999999854433   57888888888765

>PRK09274 peptide synthase; Provisional

Probab=99.96  E-value=2e-29  Score=249.74  Aligned_cols=181  Identities=13%  Similarity=0.113  Sum_probs=143.7

Q ss_pred             hccCC-CCccccccCCcccccccccccccc---------cccccceeeEeecCeeEEEEEcccce-------eccCCcee
Q psy13046        182 HTVWP-GQSYFPCCCGKLRIHPFLEVVQSF---------ECRRYQVVLHIFEHLFLELVLYIVNS-------VLYNFKWI  244 (365)
Q Consensus       182 ~~~~~-~~~~~~~~yG~tE~~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~d~~~~~-------~~~~~~~~  244 (365)
                      ...++ +..+.+. ||+||++++++.....         ......++|+|+|+++++|+|+++.+       ...+.+..
T Consensus       309 ~~~~~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~  387 (552)
T PRK09274        309 RAMLPPDAEILTP-YGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI  387 (552)
T ss_pred             HHHcCCCceEEcc-ccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCe
Confidence            33444 4678888 9999998765432211         11223478999999999999964321       12234578


Q ss_pred             eEE-eecCcccccccCCCccccccc--CCCC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCC
Q psy13046        245 NQV-SSQTMAMKSKRGLPARVKAPD--RKKC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  319 (365)
Q Consensus       245 gei-~~g~~~~~gY~~~~~~~~~~~--~~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~  319 (365)
                      ||+ ++|++++.|||++|+.|...|  +.+|  ||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|.+||+
T Consensus       388 Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~  467 (552)
T PRK09274        388 GEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPG  467 (552)
T ss_pred             eEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcc
Confidence            998 999999999999999988766  3356  99999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCC
Q psy13046        320 VLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSK  364 (365)
Q Consensus       320 v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~  364 (365)
                      |.+|+|++.+++. ++.++++|++.++...+.++++++|++.++.
T Consensus       468 V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~  511 (552)
T PRK09274        468 VKRSALVGVGVPG-AQRPVLCVELEPGVACSKSALYQELRALAAA  511 (552)
T ss_pred             cceeEEEEeCCCC-CceEEEEEEccCccccchHHHhhhhHHHHHh
Confidence            9999999998864 6678999998877666666677777665543

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=2.1e-29  Score=250.11  Aligned_cols=180  Identities=21%  Similarity=0.298  Sum_probs=157.1

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      +....+..+.+. ||+||+++++...... ....+++|+|+|+++++|+|+++..++.  +..||+ ++|+.++.||+++
T Consensus       346 ~~~~~~~~v~~~-YG~tE~~~~~~~~~~~-~~~~~~vG~~~~~~~v~i~d~~~~~~~~--g~~Gel~v~g~~~~~gY~~~  421 (562)
T PRK05677        346 WKEVTGCAICEG-YGMTETSPVVSVNPSQ-AIQVGTIGIPVPSTLCKVIDDDGNELPL--GEVGELCVKGPQVMKGYWQR  421 (562)
T ss_pred             HHHHcCCCeecc-CCccccCcceeecCcc-CCCCCccCccCCCCEEEEECCCCCCCCC--CCCeEEEEecCccchhhcCC
Confidence            344557778888 9999998766533221 2345689999999999999987665533  468998 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      |+.|++.|..+|||+|||+|++|++|+++|.||.+|+||++|.+|+|.|||++|.+||+|.+++|++++++..++.++++
T Consensus       422 ~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~  501 (562)
T PRK05677        422 PEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVF  501 (562)
T ss_pred             chhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEE
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++++...+.++++++++++|++|
T Consensus       502 v~~~~~~~~~~~~l~~~~~~~l~~~  526 (562)
T PRK05677        502 VVVKPGETLTKEQVMEHMRANLTGY  526 (562)
T ss_pred             EEeCCCCCCCHHHHHHHHHHhhhhc
Confidence            9988766678899999999999876

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.96  E-value=3.8e-29  Score=246.84  Aligned_cols=177  Identities=11%  Similarity=0.037  Sum_probs=138.5

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      +...+++..+.+. ||+||++.+++...........++|+|+|+++++|+|++++...+ .+..||+ ++|++++.|||+
T Consensus       319 ~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~-~g~~Gel~v~g~~~~~GY~~  396 (539)
T PRK06334        319 ALKTFPHIQLRQG-YGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVS-SGETGLVLTRGTSLFSGYLG  396 (539)
T ss_pred             HHHHCCCCeEEec-ccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCC-CCceEEEEEecCcccccccC
Confidence            3445677888888 999999876654332222345679999999999999976544333 3578998 999999999999


Q ss_pred             CCccccccc-CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeE------EEEEeecCCC
Q psy13046        260 LPARVKAPD-RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE------AYAYGVPDER  332 (365)
Q Consensus       260 ~~~~~~~~~-~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~------~~v~~~~~~~  332 (365)
                      +|+.+.... ..+|||+|||+|++|++|+++|+||.||+||++|++|+|.|||++|.+||+|.+      ++|++.+++.
T Consensus       397 ~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~  476 (539)
T PRK06334        397 EDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK  476 (539)
T ss_pred             CcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc
Confidence            998765322 347899999999999999999999999999999999999999999999999997      7788877542


Q ss_pred             CCcEEEEEEEEcCCCCCCHHHHHHHHHcc-cCCC
Q psy13046        333 MGEEVGISIKLKENAKLNADDIRTFCKGK-VSKF  365 (365)
Q Consensus       333 ~g~~~~a~v~~~~~~~~~~~~l~~~~~~~-l~~y  365 (365)
                        ..++++++..    .+.++++++|+++ ++.|
T Consensus       477 --~~~~~~~~~~----~~~~~~~~~l~~~~~~~~  504 (539)
T PRK06334        477 --VRLCLFTTFP----TSISEVNDILKNSKTSSI  504 (539)
T ss_pred             --eEEEEEEecc----CChHHHHHHHHhcCCccc
Confidence              2445555432    3567899999886 6554

>PRK07529 AMP-binding domain protein; Validated

Probab=99.96  E-value=3.3e-29  Score=251.64  Aligned_cols=179  Identities=22%  Similarity=0.163  Sum_probs=150.3

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEE--Ecccce-eccCCceeeEE-eecCccccccc
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELV--LYIVNS-VLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~--d~~~~~-~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      ....+..+.+. ||+||++.++...........+++|+|+|+++++|+  |+++.. ...+.+..||+ ++||+++.||+
T Consensus       354 ~~~~g~~l~~~-YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~  432 (632)
T PRK07529        354 EAATGVRIVEG-YGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL  432 (632)
T ss_pred             HHHhCCcEeee-ecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCcccccc
Confidence            34457888888 999999876654333222456889999999999986  444410 22344678998 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      +++. +...|..+|||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++
T Consensus       433 ~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~  511 (632)
T PRK07529        433 EAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPV  511 (632)
T ss_pred             CCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeE
Confidence            8654 555665689999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVS  363 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~  363 (365)
                      |+|+++++...+.++++++++++|+
T Consensus       512 a~v~l~~~~~~~~~~l~~~~~~~l~  536 (632)
T PRK07529        512 AYVQLKPGASATEAELLAFARDHIA  536 (632)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHhcc
Confidence            9999998877888999999999876

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.96  E-value=2.2e-29  Score=253.44  Aligned_cols=175  Identities=17%  Similarity=0.113  Sum_probs=148.8

Q ss_pred             CccccccCCcccccccccccccc-cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--CcccccccCCCcc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSF-ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKRGLPAR  263 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~~~  263 (365)
                      ..+.+. ||+||++..+...... .....+++|+|+||++++|+|+++.+++.  +..||+ ++|  |++++|||++++.
T Consensus       396 ~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~--g~~Gel~v~g~~p~~~~gy~~~~~~  472 (637)
T PRK00174        396 CPIVDT-WWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEG--GEGGNLVIKDPWPGMMRTIYGDHER  472 (637)
T ss_pred             CceEec-ccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCC--CCcEEEEEcCCCCcccccccCCHHH
Confidence            567788 9999998765432211 12345689999999999999987776643  567898 888  6999999999998


Q ss_pred             ccccc--CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        264 VKAPD--RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       264 ~~~~~--~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+.+  ..+|||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++|+|
T Consensus       473 ~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~v  552 (637)
T PRK00174        473 FVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFV  552 (637)
T ss_pred             HHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEE
Confidence            77665  2379999999999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             EEcCCCCCC---HHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLN---ADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~---~~~l~~~~~~~l~~y  365 (365)
                      ++.++...+   .++|+++|+++|++|
T Consensus       553 v~~~~~~~~~~~~~~l~~~l~~~l~~~  579 (637)
T PRK00174        553 TLKGGEEPSDELRKELRNWVRKEIGPI  579 (637)
T ss_pred             EECCCCCCCHHHHHHHHHHHHhhcCCc
Confidence            998765544   468999999999875

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.96  E-value=2.4e-29  Score=252.62  Aligned_cols=176  Identities=17%  Similarity=0.104  Sum_probs=149.1

Q ss_pred             CccccccCCcccccccccccccc-cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--CcccccccCCCcc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSF-ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKRGLPAR  263 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~~~  263 (365)
                      ..+.+. ||+||++..+...... .....+++|+|+||++++|+|++++.++ +.+..||+ ++|  |++++|||++++.
T Consensus       387 ~~i~~~-yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~  464 (625)
T TIGR02188       387 CPIVDT-WWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHER  464 (625)
T ss_pred             CceEec-ccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCC-CCCCeEEEEEccCCCcccccccCChHH
Confidence            567788 9999998765432211 1235678999999999999997776654 23578988 888  6899999999998


Q ss_pred             cccccC--CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        264 VKAPDR--KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       264 ~~~~~~--~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+.+.  .+|||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++|+|
T Consensus       465 ~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~v  544 (625)
T TIGR02188       465 FVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFV  544 (625)
T ss_pred             HHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEE
Confidence            776653  378999999999999999999999999999999999999999999999999999999999998999999999


Q ss_pred             EEcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      +++++...+.   ++|+++++++|++|
T Consensus       545 v~~~~~~~~~~~~~~l~~~~~~~l~~~  571 (625)
T TIGR02188       545 TLKDGYEPDDELRKELRKHVRKEIGPI  571 (625)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence            9987665443   68999999998875

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.2e-29  Score=248.07  Aligned_cols=176  Identities=20%  Similarity=0.246  Sum_probs=150.9

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ....+..+.+. ||+||++..+............++|+|+++++++|+|+++.+++.  +..||+ ++|++++.||++++
T Consensus       344 ~~~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~  420 (549)
T PRK07788        344 LEAFGPVLYNL-YGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPR--GVVGRIFVGNGFPFEGYTDGR  420 (549)
T ss_pred             HHHhCccceec-cCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCC--CCeEEEEEeCCCccccccCCC
Confidence            33345668888 999999765543322222455789999999999999987776654  578898 99999999999988


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      ..  . . .+|||+|||++++|+||+++|.||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++|+|
T Consensus       421 ~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v  496 (549)
T PRK07788        421 DK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFV  496 (549)
T ss_pred             cc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEE
Confidence            75  2 2 379999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++...+.++++++++++|++|
T Consensus       497 v~~~~~~~~~~~l~~~~~~~l~~~  520 (549)
T PRK07788        497 VKAPGAALDEDAIKDYVRDNLARY  520 (549)
T ss_pred             EeCCCCCCCHHHHHHHHHHhhhcC
Confidence            998877788899999999999876

>PLN02246 4-coumarate--CoA ligase

Probab=99.96  E-value=8.3e-29  Score=244.47  Aligned_cols=184  Identities=17%  Similarity=0.149  Sum_probs=156.2

Q ss_pred             chhccCCCCccccccCCccccccccccccc----ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046        180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQS----FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM  254 (365)
Q Consensus       180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~  254 (365)
                      .+...+++..+... ||+||++.+++....    ......+++|+|+++++++|+|++++...+ .+..||+ ++|+.++
T Consensus       317 ~~~~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~Gel~v~g~~~~  394 (537)
T PLN02246        317 AFRAKLPNAVLGQG-YGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLP-RNQPGEICIRGPQIM  394 (537)
T ss_pred             HHHHHcCCCeEecc-ccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCC-CCCceEEEEECCchh
Confidence            34455677777787 999999876542211    111344678999999999999965443333 3567888 9999999


Q ss_pred             ccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046        255 KSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       255 ~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      .||+++++.+...|..++||+|||+++++++|++++.||.||+||++|.+|+|.+||++|.+||+|.+++|++.+++..+
T Consensus       395 ~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~  474 (537)
T PLN02246        395 KGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAG  474 (537)
T ss_pred             ccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCC
Confidence            99999999999988779999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        335 EEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       335 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +.+++++++.++...+.++++++|+++|++|
T Consensus       475 ~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~  505 (537)
T PLN02246        475 EVPVAFVVRSNGSEITEDEIKQFVAKQVVFY  505 (537)
T ss_pred             ceeEEEEEeCCCCCCCHHHHHHHHHhhCcCc
Confidence            9999999988776677889999999999876

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=4.1e-29  Score=252.41  Aligned_cols=155  Identities=9%  Similarity=-0.006  Sum_probs=128.7

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEee-cCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIF-EHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ...+..+.+. ||+||+++..+..... ....+++|+|+ |+++++|+|.++.... +..+.||+ ++||++|.|||++|
T Consensus       483 ~~~g~~i~~g-YGlTEt~~~~~~~~~~-~~~~gsvG~p~~pg~e~ki~d~~~~~~~-~~~~~GEl~vrGp~v~~GY~~~p  559 (746)
T PTZ00342        483 VLLNVNYYQG-YGLTETTGPIFVQHAD-DNNTESIGGPISPNTKYKVRTWETYKAT-DTLPKGELLIKSDSIFSGYFLEK  559 (746)
T ss_pred             HhcCCCEEEe-eccCcccceeeeccCC-CCCcccccCcCCCcEEEEEecccccccC-CCCCceEEEEecCcccccccCCh
Confidence            3456778888 9999997665533322 24568999998 9999999985432221 12345898 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEE-eCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~-~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      +.|+++|+.||||+|||+|++|+||+|+|+||+||+|| .+|++|+|.+||++|.+||.|.+|+|++....   ..++|+
T Consensus       560 e~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Al  636 (746)
T PTZ00342        560 EQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAI  636 (746)
T ss_pred             hhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEE
Confidence            99999998899999999999999999999999999999 57999999999999999999999999996432   258898


Q ss_pred             EEEc
Q psy13046        341 IKLK  344 (365)
Q Consensus       341 v~~~  344 (365)
                      |+++
T Consensus       637 vv~d  640 (746)
T PTZ00342        637 ISVD  640 (746)
T ss_pred             EECC
Confidence            8865

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.96  E-value=8.3e-29  Score=251.91  Aligned_cols=178  Identities=15%  Similarity=0.140  Sum_probs=149.0

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      +...+++..+++. ||+||++..+..... ......++|+|+++++++|+|+++++++.  +..||+ ++|++++.|||+
T Consensus       280 ~~~~~~~~~~~~~-YG~tE~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~~~~--g~~GEl~i~g~~v~~GY~~  355 (705)
T PRK06060        280 LMEFFGGIPILDG-IGSTEVGQTFVSNRV-DEWRLGTLGRVLPPYEIRVVAPDGTTAGP--GVEGDLWVRGPAIAKGYWN  355 (705)
T ss_pred             HHHHcCCCceEee-eeccccCceEEeccC-CCCCcCcccccCCCcEEEEECCCCCCCCC--CCceEEEEccchhhhhhhC
Confidence            3345667888888 999999765442221 12345688999999999999987765543  467998 999999999999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +|+.+.   ..+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.+++
T Consensus       356 ~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a  432 (705)
T PRK06060        356 RPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQA  432 (705)
T ss_pred             CCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEE
Confidence            998753   34899999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             EEEEcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        340 SIKLKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      +|++..+...+.   .+++++|+++|++|
T Consensus       433 ~vv~~~~~~~~~~~~~~i~~~l~~~L~~~  461 (705)
T PRK06060        433 FLVATSGATIDGSVMRDLHRGLLNRLSAF  461 (705)
T ss_pred             EEEeccccCcChHHHHHHHHHHHHhCCCC
Confidence            999876544443   47889999999876

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.96  E-value=5.8e-29  Score=247.31  Aligned_cols=180  Identities=18%  Similarity=0.134  Sum_probs=153.4

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--Cccccccc
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKR  258 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~  258 (365)
                      +....+..+.+. ||+||++..............+++|+|+|+++++|+|+++.++  +.+..||+ ++|  +++|.|||
T Consensus       343 ~~~~~g~~i~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~--~~g~~Gel~i~~~~~~~~~GY~  419 (570)
T PRK04319        343 GMKVFGLPIHDN-WWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNEL--PPNRMGNLAIKKGWPSMMRGIW  419 (570)
T ss_pred             HHHHhCCCeEec-eeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCC--CCCCceEEEEcCCCChHHhHhc
Confidence            344456778888 9999998654432222223467899999999999999877766  34678998 776  89999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++++.+++.|. +|||+|||++++|++|+++|+||+||+||++|++|+|.|||++|.+||.|.+++|++.+++..|+.++
T Consensus       420 ~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~  498 (570)
T PRK04319        420 NNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIK  498 (570)
T ss_pred             CCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEE
Confidence            99999999987 89999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEEcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      +++++.++...+.   ++++++|+++|+.|
T Consensus       499 a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~  528 (570)
T PRK04319        499 AFVALRPGYEPSEELKEEIRGFVKKGLGAH  528 (570)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHhcccc
Confidence            9999887654332   68999999999876

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.96  E-value=9e-29  Score=244.70  Aligned_cols=183  Identities=20%  Similarity=0.202  Sum_probs=155.9

Q ss_pred             hhccCCCCccccccCCccccccccccccccc----ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFE----CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK  255 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~  255 (365)
                      +...+++..+.+. ||+||++.+........    .....++|+|+|+++++|+|++.+...+ .+..||+ ++|++++.
T Consensus       323 ~~~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p-~g~~Gel~v~g~~~~~  400 (546)
T PLN02330        323 FEAKFPGVQVQEA-YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLP-KNTPGELCVRSQCVMQ  400 (546)
T ss_pred             HHHHcCCCeEEec-ccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCC-CCCceEEEEecchhhh
Confidence            3345678889999 99999975543211111    1234689999999999999965544433 3578998 99999999


Q ss_pred             cccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCc
Q psy13046        256 SKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  335 (365)
Q Consensus       256 gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~  335 (365)
                      ||+++++.+++.++.+|||+|||++++++||+++++||.+|+||++|++|+|.+||++|.+++.|.+++|++++++..|+
T Consensus       401 gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~  480 (546)
T PLN02330        401 GYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGE  480 (546)
T ss_pred             hhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCc
Confidence            99999999998888899999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        336 EVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       336 ~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      .++++|++.++...+.++++++++++|++|
T Consensus       481 ~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~  510 (546)
T PLN02330        481 IPAACVVINPKAKESEEDILNFVAANVAHY  510 (546)
T ss_pred             eeEEEEEECCCCCCCHHHHHHHHHHhcccc
Confidence            999999988766677889999999999876

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.96  E-value=1.1e-28  Score=242.42  Aligned_cols=180  Identities=19%  Similarity=0.166  Sum_probs=156.1

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec---Cccccccc
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ---TMAMKSKR  258 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g---~~~~~gY~  258 (365)
                      ....+..+++. ||+||++..+............++|+|+++++++|+|+++.++..  +..||+ ++|   ++++.|||
T Consensus       308 ~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~--g~~Gel~v~g~~~~~~~~gy~  384 (517)
T PRK08008        308 EERFGVRLLTS-YGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPA--GEIGEICIKGVPGKTIFKEYY  384 (517)
T ss_pred             HHHhCCeEEee-ccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCC--CCcceEEEeCCCCcchhhhHh
Confidence            34457788888 999999765543322223455689999999999999977655543  468888 776   69999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++++.+++.|..+|||+|||++++|+||+++|+||.||+||++|.+|+|.+||+++.+|+.|.+++|++.+++..++.+.
T Consensus       385 ~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~  464 (517)
T PRK08008        385 LDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIK  464 (517)
T ss_pred             CChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEE
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++|+++++...+.++++++++++|++|
T Consensus       465 ~~v~~~~~~~~~~~~l~~~~~~~l~~~  491 (517)
T PRK08008        465 AFVVLNEGETLSEEEFFAFCEQNMAKF  491 (517)
T ss_pred             EEEEECCCCCCCHHHHHHHHHhhcccc
Confidence            999998877778889999999998876

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.96  E-value=1.1e-28  Score=248.62  Aligned_cols=172  Identities=15%  Similarity=0.004  Sum_probs=141.8

Q ss_pred             cccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecC--cccccccCCCcccc-
Q psy13046        190 YFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQT--MAMKSKRGLPARVK-  265 (365)
Q Consensus       190 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~--~~~~gY~~~~~~~~-  265 (365)
                      +... ||+||++..............+++|.|.+|++++|+|++++++.   +..||+ ++||  +++.|||++++.+. 
T Consensus       414 ~~~~-yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~---g~~GEl~v~gp~p~~~~gy~~~~~~t~~  489 (652)
T TIGR01217       414 LASI-SGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT---GEVGELVCTNPMPSMPIRFWNDPDGSKY  489 (652)
T ss_pred             EEec-cCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCCC---CCccEEEEecCCCccccceeCCCccchh
Confidence            4455 99999743222111111234577899999999999998887762   577898 8885  69999999998664 


Q ss_pred             --cccC-CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046        266 --APDR-KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  342 (365)
Q Consensus       266 --~~~~-~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~  342 (365)
                        ..|. .+|||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.+|+|++++++..|+.++|||+
T Consensus       490 ~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv  569 (652)
T TIGR01217       490 RDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVH  569 (652)
T ss_pred             HHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEE
Confidence              2232 2689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        343 LKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       343 ~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      ++++...+.   ++|+++|+++|++|
T Consensus       570 ~~~~~~~~~~~~~~l~~~~~~~l~~~  595 (652)
T TIGR01217       570 LAPGATLDDALLDRIKRTIRAGLSPR  595 (652)
T ss_pred             ECCCCCCCHHHHHHHHHHHHhhCCCC
Confidence            988765554   58999999999876

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.3e-28  Score=240.17  Aligned_cols=179  Identities=25%  Similarity=0.293  Sum_probs=153.3

Q ss_pred             cchhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      .++...+++..+.+. ||+||++.++............++|+|+|++.++|+|+++.+++.  +..||+ ++|+.++.||
T Consensus       271 ~~~~~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~--g~~Gel~v~~~~~~~gy  347 (487)
T PRK07638        271 EKIKNIFPYAKLYEF-YGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQK--GEIGTVYVKSPQFFMGY  347 (487)
T ss_pred             HHHHHHcCCCeEEEE-ecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCC--CCCeEEEEecccceeee
Confidence            334556778889998 999999876654332223456789999999999999987766543  578998 9999999999


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      +++++.+.+.+. +|||+|||++++|++|++++.||.+|+||++|.+|+|.|||++|.+||+|.+++|++.+++..|+.+
T Consensus       348 ~~~~~~~~~~~~-~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  426 (487)
T PRK07638        348 IIGGVLARELNA-DGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKP  426 (487)
T ss_pred             cCCHHHHhhhcc-CCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCee
Confidence            999988776554 8999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        338 GISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       338 ~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++.    ..+.++++++|+++|++|
T Consensus       427 ~~~v~~----~~~~~~l~~~~~~~l~~~  450 (487)
T PRK07638        427 VAIIKG----SATKQQLKSFCLQRLSSF  450 (487)
T ss_pred             EEEEEC----CCCHHHHHHHHHHHhhcc
Confidence            988874    356789999999998875

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.96  E-value=5.6e-29  Score=250.22  Aligned_cols=174  Identities=21%  Similarity=0.166  Sum_probs=142.1

Q ss_pred             CccccccCCccccccccccccccc--------------------------ccccceeeEeecCeeEEEEEcccceeccCC
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSFE--------------------------CRRYQVVLHIFEHLFLELVLYIVNSVLYNF  241 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~  241 (365)
                      ..+.+. ||+||++.+++......                          .....++|+|+++++++|+|++++...+ .
T Consensus       338 ~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~-~  415 (631)
T PRK07769        338 TAIKPS-YGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELP-D  415 (631)
T ss_pred             hhcccc-cchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCC-C
Confidence            346777 99999976554321110                          0112578999999999999965443333 3


Q ss_pred             ceeeEE-eecCcccccccCCCcccccccCC-----------------CCeeecCceEEEccCCcEEEEeecCceEEeCce
Q psy13046        242 KWINQV-SSQTMAMKSKRGLPARVKAPDRK-----------------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGE  303 (365)
Q Consensus       242 ~~~gei-~~g~~~~~gY~~~~~~~~~~~~~-----------------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~  303 (365)
                      +..||| ++||+++.|||++++.|++.|..                 +|||+|||+|+++ ||+|+|+||.||+||++|+
T Consensus       416 ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~  494 (631)
T PRK07769        416 GQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGR  494 (631)
T ss_pred             CCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCe
Confidence            678998 99999999999999999888842                 4899999999995 9999999999999999999


Q ss_pred             EeChHHHHHHHHc-CCCeeE--EEEEeecC-------------------CCCCcEEEEEEEEcCCC-CCCHHHHHHHHHc
Q psy13046        304 NIYPKEIEEFIQT-HPNVLE--AYAYGVPD-------------------ERMGEEVGISIKLKENA-KLNADDIRTFCKG  360 (365)
Q Consensus       304 ~v~~~eiE~~l~~-~~~v~~--~~v~~~~~-------------------~~~g~~~~a~v~~~~~~-~~~~~~l~~~~~~  360 (365)
                      ||+|.|||++|.+ ||.|.+  ++|+++++                   +..|+.++++|+++++. ..+.++|.++|++
T Consensus       495 ~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~  574 (631)
T PRK07769        495 NHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRA  574 (631)
T ss_pred             eeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHH
Confidence            9999999999996 899998  99999998                   55788999999988763 4677899999998


Q ss_pred             ccCC
Q psy13046        361 KVSK  364 (365)
Q Consensus       361 ~l~~  364 (365)
                      +|+.
T Consensus       575 ~l~~  578 (631)
T PRK07769        575 AIAV  578 (631)
T ss_pred             HHHH
Confidence            8763

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.96  E-value=1.9e-28  Score=246.06  Aligned_cols=179  Identities=17%  Similarity=0.088  Sum_probs=146.1

Q ss_pred             cCCCCccccccCCccccccccc-cccc--ccccccceeeEeecCeeEEEEEcc-cceeccCCceeeEE-eecC---cccc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLE-VVQS--FECRRYQVVLHIFEHLFLELVLYI-VNSVLYNFKWINQV-SSQT---MAMK  255 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~-~~~~--~~~~~~~~~G~~~~~~~~~i~d~~-~~~~~~~~~~~gei-~~g~---~~~~  255 (365)
                      ...+..+.+. ||+||++..+. ....  ......+++|+|+||++++|+|++ +++++  .+..||+ ++||   +++.
T Consensus       376 ~~~~~~~~~~-yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~--~g~~Gel~v~gp~~~g~~~  452 (628)
T TIGR02316       376 DGLGKPVIDN-YWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCG--PNEKGVLTVVPPLPPGCLS  452 (628)
T ss_pred             HHhCCCEEec-ccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCC--CCCcEEEEEecCCCccccc
Confidence            3456677887 99999974332 2111  112345788999999999999984 54443  3467898 8898   5789


Q ss_pred             cccCCCccccccc---CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCC
Q psy13046        256 SKRGLPARVKAPD---RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  332 (365)
Q Consensus       256 gY~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~  332 (365)
                      |||++++.+.+.+   ..++||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++++++.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~  532 (628)
T TIGR02316       453 TVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDEL  532 (628)
T ss_pred             cccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCC
Confidence            9999998776554   2378999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEEEcCCCCC--------CHHHHHHHHHcccCCC
Q psy13046        333 MGEEVGISIKLKENAKL--------NADDIRTFCKGKVSKF  365 (365)
Q Consensus       333 ~g~~~~a~v~~~~~~~~--------~~~~l~~~~~~~l~~y  365 (365)
                      .|+.+++||+++++...        ..++|+++++++|++|
T Consensus       533 ~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~  573 (628)
T TIGR02316       533 KGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAV  573 (628)
T ss_pred             CCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCC
Confidence            99999999998865432        2468999999999876

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.96  E-value=3.1e-28  Score=241.65  Aligned_cols=180  Identities=24%  Similarity=0.321  Sum_probs=154.2

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      +....+..+.+. ||+||++.+++..........+++|+|+|+++++|+|+++.+++  .+..||+ ++|+.++.|||++
T Consensus       353 ~~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~--~g~~Gel~v~g~~~~~gY~~~  429 (562)
T PRK12492        353 WEQLTGCTIVEG-YGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELP--LGERGELCIKGPQVMKGYWQQ  429 (562)
T ss_pred             HHHHhCCceeec-cCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCC--CCCceEEEEeCCccccccccC
Confidence            344567788888 99999987665333222234568899999999999998766553  3568998 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      ++.+.+.|..+|||+|||+|++|++|+++|.||.||+||++|++|+|.+||+.|.+||.|.+++|++.+++..++.+.++
T Consensus       430 ~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  509 (562)
T PRK12492        430 PEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLF  509 (562)
T ss_pred             chhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEE
Confidence            99999988778999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++..+. ..+.++++++++++|++|
T Consensus       510 v~~~~~-~~~~~~i~~~~~~~l~~~  533 (562)
T PRK12492        510 VVARDP-GLSVEELKAYCKENFTGY  533 (562)
T ss_pred             EEeCCC-CCCHHHHHHHHHHhcccc
Confidence            887643 356789999999999876

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.96  E-value=2.2e-28  Score=246.87  Aligned_cols=175  Identities=15%  Similarity=0.035  Sum_probs=144.1

Q ss_pred             CCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecC--cccccccCCCcc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQT--MAMKSKRGLPAR  263 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~--~~~~gY~~~~~~  263 (365)
                      +..+.+. ||+||++..............+++|.|+||++++|+|+++.++   .+..||+ ++||  +++.|||++++.
T Consensus       410 ~~~~~~~-yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~  485 (655)
T PRK03584        410 DVWLASI-SGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDG  485 (655)
T ss_pred             CceEEec-cChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC---CCCceEEEEccCCCCCcceeeCCCcc
Confidence            4566777 9999985433222111223457889999999999999887766   3577898 8885  899999999986


Q ss_pred             cc--cc-cC-CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        264 VK--AP-DR-KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       264 ~~--~~-~~-~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      ++  +. |. .+|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++
T Consensus       486 ~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a  565 (655)
T PRK03584        486 SRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPL  565 (655)
T ss_pred             chHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEE
Confidence            53  11 21 2679999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEEEcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        340 SIKLKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      ||+++++...+.   ++|+++|+++|++|
T Consensus       566 ~vv~~~~~~~~~~~~~~l~~~~~~~L~~~  594 (655)
T PRK03584        566 FVVLAEGVTLDDALRARIRTTIRTNLSPR  594 (655)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHhhCCCC
Confidence            999987655543   58999999999876

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.2e-28  Score=237.54  Aligned_cols=176  Identities=21%  Similarity=0.190  Sum_probs=151.9

Q ss_pred             CCccccccCCcccccccccccccc--cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSF--ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      +..+.+. ||+||++.+.......  .....+++|+|+|+++++|+|+++.+++  .+..||+ ++|++++.||+++++.
T Consensus       276 g~~v~~~-YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~--~g~~Gel~v~~~~~~~gY~~~~~~  352 (488)
T PRK09088        276 GIPMVDG-FGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCP--AGVPGELLLRGPNLSPGYWRRPQA  352 (488)
T ss_pred             CCceeee-ecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCc--CCCceEEEEECCccchhhcCChhh
Confidence            6778888 9999998654321111  1134578999999999999997665543  3567898 9999999999999999


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      +++.|..+|||+|||+|++|++|+++|.||.||+||++|.+|+|.+||++|.+||.|.+++|++.+++..|+..+++|++
T Consensus       353 ~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~  432 (488)
T PRK09088        353 TARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVP  432 (488)
T ss_pred             hhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEE
Confidence            99888889999999999999999999999999999999999999999999999999999999999998778889999998


Q ss_pred             cCCCCCCHHHHHHHHHcccCCC
Q psy13046        344 KENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       344 ~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++...+.+++.++|+++|++|
T Consensus       433 ~~~~~~~~~~l~~~~~~~l~~~  454 (488)
T PRK09088        433 ADGAPLDLERIRSHLSTRLAKY  454 (488)
T ss_pred             CCCCCCCHHHHHHHHHhhCcCC
Confidence            8766667889999999999876

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.96  E-value=2.7e-28  Score=238.35  Aligned_cols=175  Identities=24%  Similarity=0.241  Sum_probs=154.0

Q ss_pred             CCccccccCCcccccccccccc-cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQ-SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      +..+.+. ||+||+++.+.... .......+++|+|+++++++|+|++++.++  .+..||+ ++|+.++.||+++++.+
T Consensus       288 g~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~  364 (496)
T PRK06839        288 GFLFGQG-FGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVE--VGEVGELLIRGPNVMKEYWNRPDAT  364 (496)
T ss_pred             CCeeEee-ccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCC--CCCceEEEEECCCcchhhcCChHHH
Confidence            6777888 99999987554222 112245678999999999999998887743  4578898 99999999999999998


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      ...+. +|||+|||++++|++|++++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..|+.++++|+++
T Consensus       365 ~~~~~-~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~  443 (496)
T PRK06839        365 EETIQ-DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKK  443 (496)
T ss_pred             HHHHc-CCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEEC
Confidence            88776 89999999999999999999999999999999999999999999999999999999999998899999999998


Q ss_pred             CCCCCCHHHHHHHHHcccCCC
Q psy13046        345 ENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       345 ~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++...+.++++++++++|++|
T Consensus       444 ~~~~~~~~~l~~~~~~~l~~~  464 (496)
T PRK06839        444 SSSVLIEKDVIEHCRLFLAKY  464 (496)
T ss_pred             CCCCCCHHHHHHHHHhhCcCC
Confidence            877778899999999999876

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=2.8e-28  Score=240.66  Aligned_cols=173  Identities=20%  Similarity=0.235  Sum_probs=147.9

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      .+..+.+. ||+||++.++...........+++|+|+++++++|+|+++++++  .+..||+ ++|++++.||+  ++.+
T Consensus       336 ~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~--~g~~GEl~v~g~~~~~gY~--~~~~  410 (537)
T PRK13382        336 FGDVIYNN-YNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVP--TGEVGTIFVRNDTQFDGYT--SGST  410 (537)
T ss_pred             cCCcEEec-ccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCC--CCCeeEEEEEcCCcccCcc--ccch
Confidence            34567777 99999987665333222245678999999999999998776654  3567898 99999999998  5555


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      .. +. +|||+|||++++|+||+++|.||+||+||++|++|+|.|||+.|.+||+|.+++|++.+++..|+.++++|+++
T Consensus       411 ~~-~~-~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~  488 (537)
T PRK13382        411 KD-FH-DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLK  488 (537)
T ss_pred             hh-cc-CCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEEC
Confidence            44 44 79999999999999999999999999999999999999999999999999999999999988899999999998


Q ss_pred             CCCCCCHHHHHHHHHcccCCC
Q psy13046        345 ENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       345 ~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++...+.++++++++++|++|
T Consensus       489 ~~~~~~~~~l~~~l~~~l~~~  509 (537)
T PRK13382        489 PGASATPETLKQHVRDNLANY  509 (537)
T ss_pred             CCCCCCHHHHHHHHHHhccCC
Confidence            776677889999999999876

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.9e-28  Score=235.91  Aligned_cols=181  Identities=22%  Similarity=0.178  Sum_probs=153.4

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      .+....+..+++. ||+||++......... .....++|+|+++++++|+|+++.+++......||+ ++|++++.||++
T Consensus       260 ~~~~~~~~~~~~~-YG~tE~~~~~~~~~~~-~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~  337 (471)
T PRK07787        260 RLAALTGHRPVER-YGMTETLITLSTRADG-ERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLN  337 (471)
T ss_pred             HHHHHcCCCeecc-cCccccCcceecCCCC-cccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcC
Confidence            3344456778888 9999997654432221 234568999999999999998876655333347898 999999999999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeec-CceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~-~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      +++.+.+.|.++|||+|||+|++|+||++++.||+ ||++|++|.+|+|.+||++|.+++.|.+++|++.+++..++.++
T Consensus       338 ~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~  417 (471)
T PRK07787        338 RPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIV  417 (471)
T ss_pred             ChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEE
Confidence            99999999988999999999999999999999996 89999999999999999999999999999999999988889999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++|++..  ..+.+++.++++++|++|
T Consensus       418 a~v~~~~--~~~~~~l~~~l~~~l~~~  442 (471)
T PRK07787        418 AYVVGAD--DVAADELIDFVAQQLSVH  442 (471)
T ss_pred             EEEEeCC--CCCHHHHHHHHHhhcccc
Confidence            9999743  467789999999999876

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.96  E-value=1.8e-28  Score=239.70  Aligned_cols=181  Identities=22%  Similarity=0.264  Sum_probs=155.7

Q ss_pred             hhccCCCCccccccCCccccccccccccc-ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQS-FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +...+++..+.+. ||+||++..++.... ......+++|+|+|+++++|+|+++..++  .+..||+ ++|++++.||+
T Consensus       284 ~~~~~~~~~v~~~-YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~--~~~~Gel~v~g~~~~~Gy~  360 (497)
T PRK06145        284 FTRVFTRARYIDA-YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLP--PNMKGEICMRGPKVTKGYW  360 (497)
T ss_pred             HHHHcCCCceEEe-ecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCC--CCCceEEEEECcchhhhhc
Confidence            3445667778888 999999875542221 12234568999999999999997665543  3578898 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++++.+++.|. ++||+|||++++|++|+++++||+||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.+.
T Consensus       361 ~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~  439 (497)
T PRK06145        361 KDPEKTAEAFY-GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERIT  439 (497)
T ss_pred             CChHHHHHHHh-CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEE
Confidence            99999998886 89999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++.+....+.++++++++++|++|
T Consensus       440 ~~v~~~~~~~~~~~~l~~~~~~~l~~~  466 (497)
T PRK06145        440 AVVVLNPGATLTLEALDRHCRQRLASF  466 (497)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhhhcC
Confidence            999988766677889999999999876

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.95  E-value=6.1e-28  Score=238.82  Aligned_cols=175  Identities=22%  Similarity=0.200  Sum_probs=150.2

Q ss_pred             CCCccccccCCcccccccccccccc-cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSF-ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      .+..+.+. ||+||++.++...... ......++|+|+|+++++|+|+++++++.  +..||+ ++|++++.||+++|+.
T Consensus       336 ~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~  412 (547)
T PRK13295        336 LGAKIVSA-WGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPA--GQIGRLQVRGCSNFGGYLKRPQL  412 (547)
T ss_pred             hCCCeEEe-ccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCC--CCCCeEEEEcCcccccccCCccc
Confidence            37888888 9999998765433221 12335678999999999999987665533  467888 9999999999999998


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      |+..  .+|||+|||+++++++|++++.||.||+||++|++|+|.+||++|.+|++|.+++|++.+++..|+.++++|++
T Consensus       413 t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~  490 (547)
T PRK13295        413 NGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVP  490 (547)
T ss_pred             cccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEe
Confidence            8776  47899999999999999999999999999999999999999999999999999999999999889999999998


Q ss_pred             cCCCCCCHHHHHHHHHc-ccCCC
Q psy13046        344 KENAKLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       344 ~~~~~~~~~~l~~~~~~-~l~~y  365 (365)
                      +++...+.+++++++++ +|++|
T Consensus       491 ~~~~~~~~~~l~~~~~~~~l~~~  513 (547)
T PRK13295        491 RPGQSLDFEEMVEFLKAQKVAKQ  513 (547)
T ss_pred             CCCCCCCHHHHHHHHHhccCccc
Confidence            87766777899999986 67765

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.95  E-value=1.8e-28  Score=248.41  Aligned_cols=159  Identities=10%  Similarity=-0.048  Sum_probs=129.9

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEE-cccceec-cCCceeeEE-eecCccccccc
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVL-YIVNSVL-YNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~-~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +....+..+.+. ||+||++..++..... ....+++|+|+|+++++|+| ++++... ....+.||+ ++||++|.|||
T Consensus       440 ~~~~~g~~v~~~-YG~TEt~~~~~~~~~~-~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~  517 (696)
T PLN02387        440 INICLGAPIGQG-YGLTETCAGATFSEWD-DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYF  517 (696)
T ss_pred             HHHHcCCCeeEe-echhhcccceeecCcc-cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhc
Confidence            334457788888 9999998765533322 23467899999999999999 4444332 123346898 99999999999


Q ss_pred             CCCcccccccC--CCC--eeecCceEEEccCCcEEEEeecCceEEe-CceEeChHHHHHHHHcCCCeeEEEEEeecCCCC
Q psy13046        259 GLPARVKAPDR--KKC--SQRPRYQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  333 (365)
Q Consensus       259 ~~~~~~~~~~~--~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  333 (365)
                      ++|+.|+++|.  ++|  ||+|||+|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||.|.+++|++.+..  
T Consensus       518 ~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~--  595 (696)
T PLN02387        518 KNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH--  595 (696)
T ss_pred             CCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc--
Confidence            99999999983  345  9999999999999999999999999997 6999999999999999999999999987643  


Q ss_pred             CcEEEEEEEEcC
Q psy13046        334 GEEVGISIKLKE  345 (365)
Q Consensus       334 g~~~~a~v~~~~  345 (365)
                       ..++|+|++++
T Consensus       596 -~~~~a~vv~~~  606 (696)
T PLN02387        596 -SYCVALVVPSQ  606 (696)
T ss_pred             -ceEEEEEEeCH
Confidence             35788888754

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.95  E-value=4.1e-28  Score=239.01  Aligned_cols=176  Identities=22%  Similarity=0.220  Sum_probs=149.2

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeec-CeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFE-HLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      .+..+.+. ||+||++...............++|+|++ +..++|+|++++.++.  +..||+ ++|+.++.|||++++.
T Consensus       323 ~g~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~--g~~Gei~v~g~~~~~gY~~~~~~  399 (527)
T TIGR02275       323 FGCQLQQV-FGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAP--GETGMLLTRGPYTFRGYYKAPEH  399 (527)
T ss_pred             hCCeEEee-eccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCC--CCceEEEecCCccchhhcCChhH
Confidence            46778888 99999754332211111134467899995 8899999977665433  577888 9999999999999999


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      +.+.|.++|||+|||+++++++|++++.||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..++.++++|++
T Consensus       400 ~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~  479 (527)
T TIGR02275       400 NAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVV  479 (527)
T ss_pred             hHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEE
Confidence            99999889999999999999999999999999999999999999999999999999999999999999888999999998


Q ss_pred             cCCCCCCHHHHHHHHHcc-cCCC
Q psy13046        344 KENAKLNADDIRTFCKGK-VSKF  365 (365)
Q Consensus       344 ~~~~~~~~~~l~~~~~~~-l~~y  365 (365)
                      +++ ..+..+|+++++++ |++|
T Consensus       480 ~~~-~~~~~~l~~~l~~~~l~~~  501 (527)
T TIGR02275       480 RDP-ALKAAQLRRFLRERGLAEY  501 (527)
T ss_pred             CCC-CCCHHHHHHHHHhCCCccc
Confidence            765 46788999999985 8765

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.95  E-value=9.5e-28  Score=231.66  Aligned_cols=162  Identities=19%  Similarity=0.222  Sum_probs=137.2

Q ss_pred             CCCccccccCCcccccccccccc-cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQ-SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      .+..+.+. ||+||++..+.... ........++|+|+|+++++|+          .+..||+ ++||.++.||++++. 
T Consensus       253 ~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~----------~g~~Gel~v~g~~~~~gY~~~~~-  320 (452)
T PRK07445        253 LQLRLAPT-YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP----------ANQTGNITIQAQSLALGYYPQIL-  320 (452)
T ss_pred             cCCeEecC-cchhhhcccccccCchhhccCCCcCCccCCCCeEEEc----------CCCcceEEEeCCccchhhcCCcc-
Confidence            36778888 99999975544221 1111235678999999999987          1356888 999999999998643 


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                           ..+|||+|||++++|+||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++|+++.
T Consensus       321 -----~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~  395 (452)
T PRK07445        321 -----DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVP  395 (452)
T ss_pred             -----CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEe
Confidence                 237999999999999999999999999999999999999999999999999999999999999889999999998


Q ss_pred             cCCCCCCHHHHHHHHHcccCCC
Q psy13046        344 KENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       344 ~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++ ..+.++++++|+++|++|
T Consensus       396 ~~~-~~~~~~l~~~~~~~L~~~  416 (452)
T PRK07445        396 KDP-SISLEELKTAIKDQLSPF  416 (452)
T ss_pred             CCC-CCCHHHHHHHHHHhCCcc
Confidence            765 456789999999999876

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.95  E-value=4.1e-28  Score=263.61  Aligned_cols=181  Identities=15%  Similarity=0.083  Sum_probs=149.3

Q ss_pred             cCCCCccccccCCcccccccccccccc--c--------ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSF--E--------CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTM  252 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~--~--------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~  252 (365)
                      ..++..+++. ||+||++..++.....  .        .....++|+|+++++++|+|+++...+.+.+..||+ ++||+
T Consensus       552 ~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~  630 (1389)
T TIGR03443       552 LAENVCIVNM-YGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGG  630 (1389)
T ss_pred             hCCCCEEEEC-ccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccc
Confidence            4567888898 9999997665522110  0        012357899999999999997665444555788998 99999


Q ss_pred             ccccccCCCcccccccC----------------------------CCCeeecCceEEEccCCcEEEEeecCceEEeCceE
Q psy13046        253 AMKSKRGLPARVKAPDR----------------------------KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGEN  304 (365)
Q Consensus       253 ~~~gY~~~~~~~~~~~~----------------------------~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~  304 (365)
                      +++||+++|+.|+++|.                            .++||+|||+|++++||+|+|+||.||+||++|+|
T Consensus       631 v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~r  710 (1389)
T TIGR03443       631 LAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFR  710 (1389)
T ss_pred             cchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEE
Confidence            99999999999998883                            25799999999999999999999999999999999


Q ss_pred             eChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCC-CC-------------------------CHHHHHHHH
Q psy13046        305 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA-KL-------------------------NADDIRTFC  358 (365)
Q Consensus       305 v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~-~~-------------------------~~~~l~~~~  358 (365)
                      |+|.|||++|.+||.|.+++|++.++...++.++|++++..+. ..                         ..+++++++
T Consensus       711 I~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  790 (1389)
T TIGR03443       711 IELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYL  790 (1389)
T ss_pred             ecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHH
Confidence            9999999999999999999999988887788999999876221 10                         135789999


Q ss_pred             HcccCCC
Q psy13046        359 KGKVSKF  365 (365)
Q Consensus       359 ~~~l~~y  365 (365)
                      +++||.|
T Consensus       791 ~~~Lp~y  797 (1389)
T TIGR03443       791 KKKLPSY  797 (1389)
T ss_pred             HhhCCcc
Confidence            9999987

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.95  E-value=5.3e-28  Score=238.57  Aligned_cols=178  Identities=24%  Similarity=0.266  Sum_probs=150.2

Q ss_pred             cCCCCccccccCCcccccccccccccc----cccccceeeEe--ecCeeEEEEEcccceeccCCceeeEE-eecCccccc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHI--FEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKS  256 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~--~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~g  256 (365)
                      ...+..+.+. ||+||++..++.....    ......++|.+  .++++++|+|+++++++.  +..||+ ++|+++++|
T Consensus       317 ~~~~~~v~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~--g~~Gel~v~g~~v~~g  393 (534)
T PRK05852        317 TEFAAPVVCA-FGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPA--GAVGEVWLRGTTVVRG  393 (534)
T ss_pred             HHhCCChhhc-cCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCC--CCceEEEEecCcccch
Confidence            3446778887 9999998765532110    11122234444  789999999988766543  467888 999999999


Q ss_pred             ccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcE
Q psy13046        257 KRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  336 (365)
Q Consensus       257 Y~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  336 (365)
                      ||++++.|++.|. +|||+|||++++|+||++++.||+||+||++|.+|+|.+||++|.+||+|.+|+|++.+++..++.
T Consensus       394 Y~~~~~~t~~~~~-~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~  472 (534)
T PRK05852        394 YLGDPTITAANFT-DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEA  472 (534)
T ss_pred             hcCCcccchhhhc-CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCce
Confidence            9999999999887 899999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        337 VGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       337 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++|++++....+.+++.++|+++|++|
T Consensus       473 ~~~~vv~~~~~~~~~~~i~~~~~~~l~~~  501 (534)
T PRK05852        473 VAAVIVPRESAPPTAEELVQFCRERLAAF  501 (534)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHhcccc
Confidence            99999987766678899999999999876

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.95  E-value=6.9e-28  Score=238.10  Aligned_cols=178  Identities=21%  Similarity=0.232  Sum_probs=154.9

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecC---cccccc
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQT---MAMKSK  257 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~---~~~~gY  257 (365)
                      +....+..+.+. ||+||++.++.....  ....+++|.++++++++|+|+++.+++.  +..||+ ++|+   +++.||
T Consensus       312 ~~~~~~~~v~~~-YG~tE~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~--g~~Gei~v~~~~~~~~~~GY  386 (542)
T PRK06155        312 FRERFGVDLLDG-YGSTETNFVIAVTHG--SQRPGSMGRLAPGFEARVVDEHDQELPD--GEPGELLLRADEPFAFATGY  386 (542)
T ss_pred             HHHHcCCCEEee-ecccccCccccCCCC--CCCCCCcCccCCCceEEEECCCCCCCCC--CCceEEEEecCCccccchhh
Confidence            344557788888 999999876654322  2456789999999999999977655543  467898 8898   799999


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      +++++.+.+.|. ++||+|||+|++++||+++|.||.||+||++|.+|+|.+||++|.+||+|.+++|++++++..++.+
T Consensus       387 ~~~~~~~~~~~~-~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~  465 (542)
T PRK06155        387 FGMPEKTVEAWR-NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEV  465 (542)
T ss_pred             cCCHHHHHHhhc-CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceE
Confidence            999999988886 8999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             EEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        338 GISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       338 ~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      .++++++.+...+..+++++|+++|+.|
T Consensus       466 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~  493 (542)
T PRK06155        466 MAAVVLRDGTALEPVALVRHCEPRLAYF  493 (542)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHhhCcCc
Confidence            9999988777788899999999999876

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=9.8e-28  Score=237.86  Aligned_cols=182  Identities=30%  Similarity=0.421  Sum_probs=156.7

Q ss_pred             hhccCCCCccccccCCcccccccccccccc--cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSF--ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      +...+++..+.+. ||+||++.++......  ......++|+|+|++.++|+|+++.++.  .+..||+ ++|+.++.||
T Consensus       337 ~~~~~~~~~i~~~-YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~--~g~~Gel~v~g~~~~~gy  413 (558)
T PRK12583        337 VMDEMHMAEVQIA-YGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVP--RGEIGELCTRGYSVMKGY  413 (558)
T ss_pred             HHHHcCCcceecc-ccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCC--CCCeeEEEEEeCccchhh
Confidence            4456666678887 9999998876633221  1134578999999999999998854443  3578898 9999999999


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      +++++.+.+.|..++||+|||++++++||++++.||.||+||++|.+|+|.+||++|.+||+|.+++|++.+++..++.+
T Consensus       414 ~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~  493 (558)
T PRK12583        414 WNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEI  493 (558)
T ss_pred             cCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEE
Confidence            99999998888668999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             EEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        338 GISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       338 ~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++++.++...+.++++++++++|++|
T Consensus       494 ~~~v~~~~~~~~~~~~i~~~~~~~L~~~  521 (558)
T PRK12583        494 VAWVRLHPGHAASEEELREFCKARIAHF  521 (558)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHhhcccC
Confidence            9999988766677889999999999876

>PRK08315 AMP-binding domain protein; Validated

Probab=99.95  E-value=1e-27  Score=237.80  Aligned_cols=181  Identities=33%  Similarity=0.467  Sum_probs=155.6

Q ss_pred             hccCCCCccccccCCccccccccccccccc--ccccceeeEeecCeeEEEEEcc-cceeccCCceeeEE-eecCcccccc
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFE--CRRYQVVLHIFEHLFLELVLYI-VNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~-~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      ...++...+.+. ||+||++++++......  .....++|+|+|+++++|+|++ +..++  .+..||+ ++|+++++||
T Consensus       336 ~~~~~~~~l~~~-YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~--~g~~GEl~v~g~~~~~gy  412 (559)
T PRK08315        336 IDKMHMSEVTIA-YGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVP--RGEQGELCTRGYSVMKGY  412 (559)
T ss_pred             HHHcCCcceeEE-EcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCC--CCCceEEEEECchhhhhh
Confidence            345666668888 99999987665332211  1346789999999999999987 54443  3578898 9999999999


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      +++|+.+...|..++||+|||++++|+||+++|+||.||++|++|++|+|.|||++|.++|+|.+++|++.+++..++.+
T Consensus       413 ~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  492 (559)
T PRK08315        413 WNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEV  492 (559)
T ss_pred             cCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEE
Confidence            99999998888668999999999999999999999999999999999999999999999999999999999998878889


Q ss_pred             EEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        338 GISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       338 ~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++|++.++...+.++++++++++|+.|
T Consensus       493 ~~~v~~~~~~~~~~~~l~~~l~~~l~~~  520 (559)
T PRK08315        493 CAWIILRPGATLTEEDVRDFCRGKIAHY  520 (559)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHhhcccc
Confidence            9999988766678889999999999876

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=3.9e-28  Score=246.32  Aligned_cols=156  Identities=10%  Similarity=-0.027  Sum_probs=128.4

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ....+ .+.+. ||+||++..++..... ....+++|+|+|+++++|+|.++.......++.||+ ++||++|.|||++|
T Consensus       449 ~~~~~-~l~~~-YG~TEt~~~~~~~~~~-~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~p  525 (700)
T PTZ00216        449 NVVFG-MVIQG-WGLTETVCCGGIQRTG-DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQE  525 (700)
T ss_pred             HHHhh-hHhhc-cCcccccccccccCCC-CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCCh
Confidence            33455 77888 9999997665533222 245688999999999999997654333333456998 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEE-eCceEeChHHHHHHHHcCCCeeE--EEEEeecCCCCCcEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLE--AYAYGVPDERMGEEVG  338 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~-~~G~~v~~~eiE~~l~~~~~v~~--~~v~~~~~~~~g~~~~  338 (365)
                      +.|+++|+.+|||+|||+|++|+||+|+|+||+||+|| ++|++|+|.+||++|.+||.|.+  ++|+..++.   ..++
T Consensus       526 e~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~---~~l~  602 (700)
T PTZ00216        526 ELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR---SYIC  602 (700)
T ss_pred             hHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC---ceEE
Confidence            99999998899999999999999999999999999999 99999999999999999999997  455554433   4688


Q ss_pred             EEEEEc
Q psy13046        339 ISIKLK  344 (365)
Q Consensus       339 a~v~~~  344 (365)
                      |+|+++
T Consensus       603 a~vv~~  608 (700)
T PTZ00216        603 ALVLTD  608 (700)
T ss_pred             EEEecC
Confidence            888875

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=1.1e-27  Score=238.39  Aligned_cols=181  Identities=24%  Similarity=0.321  Sum_probs=155.0

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ....+..+.+. ||+||++.++...........+++|+|+|++.++|+|+++.....+.+..||+ ++|+.++.||++++
T Consensus       357 ~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~  435 (573)
T PRK05605        357 EKLTGGLLVEG-YGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRP  435 (573)
T ss_pred             HHHhCCCeecc-cccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCCh
Confidence            34456778888 99999987665433222234578999999999999998752222233578898 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+.+.|. +|||+|||++++|++|+++|.||.||++|++|++|+|.+||+++.+|+.|.+++|++.+++..++.+++++
T Consensus       436 ~~~~~~~~-~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~v  514 (573)
T PRK05605        436 EETAKSFL-DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAV  514 (573)
T ss_pred             hHhhhccc-CCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEE
Confidence            99998887 78999999999999999999999999999999999999999999999999999999999988889999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++...+.++|+++++++|++|
T Consensus       515 v~~~~~~~~~~~l~~~~~~~l~~~  538 (573)
T PRK05605        515 VLEPGAALDPEGLRAYCREHLTRY  538 (573)
T ss_pred             EECCCCCCCHHHHHHHHHHhCccc
Confidence            998877778899999999998875

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.95  E-value=5e-28  Score=243.70  Aligned_cols=160  Identities=12%  Similarity=-0.048  Sum_probs=130.3

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      .+..+++..+.+. ||+||++...+..........+++|+|+|+++++|+|. +.+....+.+..||+ ++||++|.|||
T Consensus       402 ~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~  480 (660)
T PLN02430        402 FLRVTSCAFVVQG-YGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY  480 (660)
T ss_pred             HHHHhcCCCeeee-cchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccccc
Confidence            3344555667888 99999987655433222234688999999999999873 322222333456898 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEe-CceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      ++|+.|+++|. +|||+|||+|++|+||+|+|+||+||+||. +|++|+|.+||++|.+||.|.+++|++..   .++.+
T Consensus       481 ~~~e~t~~~~~-dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~  556 (660)
T PLN02430        481 KNPELTEEVMK-DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSML  556 (660)
T ss_pred             CChHHhhhhhh-ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceE
Confidence            99999999996 999999999999999999999999999995 79999999999999999999999999843   34679


Q ss_pred             EEEEEEcC
Q psy13046        338 GISIKLKE  345 (365)
Q Consensus       338 ~a~v~~~~  345 (365)
                      +|+|++++
T Consensus       557 ~A~vv~~~  564 (660)
T PLN02430        557 VAVVVPNE  564 (660)
T ss_pred             EEEEEcCH
Confidence            99999764

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=1e-27  Score=235.18  Aligned_cols=179  Identities=25%  Similarity=0.292  Sum_probs=154.2

Q ss_pred             cCCCCccccccCCccccccccccccccccc--ccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECR--RYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~--~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      .++...+.+. ||+||++.+..........  ...++|+|+++++++|+|+++..++  .+..||+ ++|+.++.||+++
T Consensus       304 ~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~--~g~~Gel~v~~~~~~~gy~~~  380 (513)
T PRK07656        304 ELGVDIVLTG-YGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVP--VGEVGELLVRGPNVMKGYYDD  380 (513)
T ss_pred             HcCCCceEeE-EccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCC--CCCceEEEEEcchhhhhhcCC
Confidence            3443377888 9999997766533322212  2578999999999999998766554  3467898 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      +..+...+..+|||+|||+|+++++|++++.||.||+||++|.+++|.+||++|.++++|.+++|++.+++..|+.+.++
T Consensus       381 ~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~  460 (513)
T PRK07656        381 PEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAY  460 (513)
T ss_pred             HHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEE
Confidence            99998888778999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |+.+++...+.++++++++++|++|
T Consensus       461 v~~~~~~~~~~~~l~~~~~~~l~~~  485 (513)
T PRK07656        461 VVLKPGAELTEEELIAYCREHLAKY  485 (513)
T ss_pred             EEECCCCCCCHHHHHHHHHhhcccc
Confidence            9988766778899999999999875

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.95  E-value=2.3e-27  Score=234.33  Aligned_cols=175  Identities=20%  Similarity=0.164  Sum_probs=148.6

Q ss_pred             CCCccccccCCccccccccccccccc-ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFE-CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      .+..+.+. ||+||++.+........ .....++|+|+|+++++|+|+++.+++  .+..||+ ++|++++.||+++|+.
T Consensus       334 ~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~  410 (538)
T TIGR03208       334 LGALIVSA-WGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLS--QGETGRLLVRGCSNFGGYLKRPHL  410 (538)
T ss_pred             cCCeEEee-eccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCc--CCCCcEEEEecCcccccccCCccc
Confidence            46778888 99999987665332211 122457899999999999998776553  3467898 9999999999999987


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      +.  +..+|||+|||++++|++|+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.++...|+.+.+++++
T Consensus       411 ~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  488 (538)
T TIGR03208       411 NS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVP  488 (538)
T ss_pred             cc--ccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEE
Confidence            75  3458999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             cCCCCCCHHHHHHHHHc-ccCCC
Q psy13046        344 KENAKLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       344 ~~~~~~~~~~l~~~~~~-~l~~y  365 (365)
                      .++...+.+++++++++ +++.|
T Consensus       489 ~~~~~~~~~~l~~~~~~~~l~~~  511 (538)
T TIGR03208       489 KPGCTLDFAAMVAFLKAQKVALQ  511 (538)
T ss_pred             CCCCCCCHHHHHHHHHhcchhhc
Confidence            87767788899999985 67654

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.95  E-value=2.3e-27  Score=232.29  Aligned_cols=180  Identities=26%  Similarity=0.267  Sum_probs=154.0

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ....+..+.+. ||+||++..+...... .....++|+|+++++++|+|++.+...+ .+..||+ ++|++++.||++++
T Consensus       290 ~~~~~~~~~~~-YG~tE~~~~~~~~~~~-~~~~~~~G~~~~~~~v~i~d~~~~~~~~-~g~~Gel~i~~~~~~~gy~~~~  366 (504)
T PRK07514        290 QERTGHAILER-YGMTETNMNTSNPYDG-ERRAGTVGFPLPGVSLRVTDPETGAELP-PGEIGMIEVKGPNVFKGYWRMP  366 (504)
T ss_pred             HHHhCCcceee-cccccccccccCCccc-cccCcccccCCCCcEEEEEECCCCCCCC-CCCceEEEEecCCccccccCCc
Confidence            34456678888 9999998655432222 1345678999999999999954443333 3567898 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+++.|..++||+|||+++++++|+++++||.||+||++|.+|+|.+||+++.++++|.+++|++.+++..++.+++++
T Consensus       367 ~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~  446 (504)
T PRK07514        367 EKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVV  446 (504)
T ss_pred             hhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEE
Confidence            99999998899999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++...+.++++++++++|++|
T Consensus       447 ~~~~~~~~~~~~l~~~~~~~l~~~  470 (504)
T PRK07514        447 VPKPGAALDEAAILAALKGRLARF  470 (504)
T ss_pred             EECCCCCCCHHHHHHHHHhhcccC
Confidence            998776678889999999998875

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.9e-27  Score=236.36  Aligned_cols=177  Identities=19%  Similarity=0.272  Sum_probs=147.4

Q ss_pred             CCccccccCCccccccccccccccc------ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFE------CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      +..+....||+||++..+.......      .....++|+|+||++++|+|++.+...+ .+..||+ ++|++++.||++
T Consensus       352 g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~-~g~~Gel~v~g~~v~~gY~~  430 (567)
T PRK06178        352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLP-LGAEGEIVVRTPSLLKGYWN  430 (567)
T ss_pred             CCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCC-CCCceEEEEECCcccccccC
Confidence            4444433399999876543221110      1234678999999999999955333333 2467898 999999999999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +++.+...|. +|||+|||++++++||+++|+||++|+||++|.+|+|.+||+++.++++|.++++++.+++..++.+++
T Consensus       431 ~~~~~~~~~~-dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~  509 (567)
T PRK06178        431 KPEATAEALR-DGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVA  509 (567)
T ss_pred             Chhhhhhccc-CCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEE
Confidence            9999988886 899999999999999999999999999999999999999999999999999999999998888889999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        340 SIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +|+++++...+.++++++++++|++|
T Consensus       510 ~v~~~~~~~~~~~~l~~~~~~~l~~~  535 (567)
T PRK06178        510 FVQLKPGADLTAAALQAWCRENMAVY  535 (567)
T ss_pred             EEEeCCCCcCCHHHHHHHHHhcCccc
Confidence            99988776678899999999999876

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.6e-27  Score=235.49  Aligned_cols=179  Identities=19%  Similarity=0.139  Sum_probs=142.5

Q ss_pred             CCCCccccccCCccccccccccccccc----ccccceeeEeecCeeEEEEEcccceecc----CCceeeEE-eecCcccc
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSFE----CRRYQVVLHIFEHLFLELVLYIVNSVLY----NFKWINQV-SSQTMAMK  255 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~~G~~~~~~~~~i~d~~~~~~~~----~~~~~gei-~~g~~~~~  255 (365)
                      ..+..+.+. ||+||++..+.......    ....+++|+|++|++++|+|+++.....    +.+..||+ ++|++++.
T Consensus       308 ~~g~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~  386 (540)
T PRK05857        308 ATGVRTAQV-YGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANML  386 (540)
T ss_pred             HhCCeeecc-cCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhh
Confidence            456778888 99999975433211110    1235789999999999999987664332    23567898 99999999


Q ss_pred             cccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCc
Q psy13046        256 SKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  335 (365)
Q Consensus       256 gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~  335 (365)
                      |||++++.|.+.|. +|||+|||+|++|++|++++.||.||+||++|++|+|.|||++|..||+|.+++|++.++...++
T Consensus       387 GY~~~~~~t~~~~~-~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~  465 (540)
T PRK05857        387 GYWNNPERTAEVLI-DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGA  465 (540)
T ss_pred             hhhCCccchhhhcC-CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCcccccc
Confidence            99999999999886 89999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             EEEEEEEEcCCCCC-CHHH----HHHHHHcccCCC
Q psy13046        336 EVGISIKLKENAKL-NADD----IRTFCKGKVSKF  365 (365)
Q Consensus       336 ~~~a~v~~~~~~~~-~~~~----l~~~~~~~l~~y  365 (365)
                      .++++++..+..+. ..++    +.++++++|++|
T Consensus       466 ~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~  500 (540)
T PRK05857        466 LVGLAVVASAELDESAARALKHTIAARFRRESEPM  500 (540)
T ss_pred             ceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccc
Confidence            88888887653221 1233    444555666654

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.95  E-value=9.6e-28  Score=236.25  Aligned_cols=166  Identities=19%  Similarity=0.090  Sum_probs=131.0

Q ss_pred             ccccccCCcccccccccccccc--------------cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046        189 SYFPCCCGKLRIHPFLEVVQSF--------------ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       189 ~~~~~~yG~tE~~~~~~~~~~~--------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~  253 (365)
                      .+.+. ||+||++..++.....              ......++|+|+||++++|+|+++.... +.+..||+ ++|+++
T Consensus       305 ~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~-~~g~~GEl~v~g~~~  382 (525)
T PRK05851        305 AAAPS-YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGV-AGREIGEIEIRGASM  382 (525)
T ss_pred             hcccc-cchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccC-CCCCeEEEEEecCch
Confidence            47777 9999997655422110              0123468999999999999997765433 33578998 999999


Q ss_pred             cccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCC
Q psy13046        254 MKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  333 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  333 (365)
                      |.|||++|+.+     .+|||+|||+|++| +|+|+|+||.||+||++|+||+|.|||++|.+||+|.+++|++++++..
T Consensus       383 ~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~  456 (525)
T PRK05851        383 MSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEG  456 (525)
T ss_pred             hhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCC
Confidence            99999998643     47899999999997 7999999999999999999999999999999999999999999998888


Q ss_pred             CcEEEEEEEEcCCCCCCHHHHHHHHHcccC
Q psy13046        334 GEEVGISIKLKENAKLNADDIRTFCKGKVS  363 (365)
Q Consensus       334 g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~  363 (365)
                      ++.+.++|+.... ..+.++++++++++|+
T Consensus       457 ~~~~~~~v~~~~~-~~~~~~~~~~~~~~l~  485 (525)
T PRK05851        457 SARPGLVIAAEFR-GPDEAGARSEVVQRVA  485 (525)
T ss_pred             CCceeEEEEEEec-CcchHHHHHHHHHHHH
Confidence            8877777765421 2344556666665554

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.95  E-value=2.9e-27  Score=233.67  Aligned_cols=176  Identities=14%  Similarity=0.068  Sum_probs=149.1

Q ss_pred             CCccccccCCccccccccccccccc--ccccceeeEee-cCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFE--CRRYQVVLHIF-EHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPA  262 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~  262 (365)
                      +..+.+. ||+||++++++......  .....++|+++ +++.++|+|++++...+ .+..||+ ++|++++.||+++|+
T Consensus       319 ~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~-~g~~Gel~v~g~~~~~gY~~~~~  396 (540)
T PRK06164        319 GVPLTGL-YGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLP-DGESGEIEIRAPSLMRGYLDNPD  396 (540)
T ss_pred             CCceecc-eeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCC-CCCeeEEEEecccccccccCCch
Confidence            6677888 99999987655332211  12334568875 79999999976554443 3678998 999999999999999


Q ss_pred             ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046        263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  342 (365)
Q Consensus       263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~  342 (365)
                      .|.+.|..+|||+|||+|++|++|++++.||.||+||++|.+|+|.+||++|.+||+|.+++|++.+.. .++.++++++
T Consensus       397 ~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv  475 (540)
T PRK06164        397 ATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVI  475 (540)
T ss_pred             hhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEE
Confidence            999999889999999999999999999999999999999999999999999999999999999998854 4578999999


Q ss_pred             EcCCCCCCHHHHHHHHHcccCCC
Q psy13046        343 LKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       343 ~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++...+.++++++|+++|++|
T Consensus       476 ~~~~~~~~~~~l~~~~~~~l~~~  498 (540)
T PRK06164        476 PTDGASPDEAGLMAACREALAGF  498 (540)
T ss_pred             eCCCCCCCHHHHHHHHHhhcccC
Confidence            88776678899999999999876

>KOG1256|consensus

Probab=99.95  E-value=2.9e-28  Score=233.69  Aligned_cols=162  Identities=11%  Similarity=-0.011  Sum_probs=137.2

Q ss_pred             cchhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      ++......+..++.. ||+|||++.++...... ...+++|.|+|+++++++|.....-... +..||| ++|+++|.||
T Consensus       436 ~~F~r~~~g~~v~eG-YGlTEts~g~~~~~~~d-~~lgsvG~p~p~~~vKL~dvpe~ny~a~-~~~GEIcirG~~Vf~GY  512 (691)
T KOG1256|consen  436 LTFFRAALGCRVLEG-YGLTETSAGTTLTLPGD-NVLGSVGPPVPGNEVKLVDVPEMNYDAD-GSKGEICVRGPNVFMGY  512 (691)
T ss_pred             HHHHHHhcCceeeec-ccccccCCceEeccCCC-CCCCCcCCcccCceEEEechHHhCcCcC-CCcceEEEecchhceec
Confidence            344455677888999 99999986665444333 4789999999999999988643333333 236888 9999999999


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEE-eCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcE
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  336 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~-~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  336 (365)
                      |+||+.|+++|++|||++|||+|++|++|.|.|+||+|++|| ..|++|.|..||++..+.+.|.+.+|.+.....   .
T Consensus       513 yK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~---~  589 (691)
T KOG1256|consen  513 YKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRS---F  589 (691)
T ss_pred             cCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchh---c
Confidence            999999999999999999999999999999999999999999 689999999999999999999999999876553   5


Q ss_pred             EEEEEEEcCC
Q psy13046        337 VGISIKLKEN  346 (365)
Q Consensus       337 ~~a~v~~~~~  346 (365)
                      ++|+|+++++
T Consensus       590 LvaiVvpd~e  599 (691)
T KOG1256|consen  590 LVAIVVPDPE  599 (691)
T ss_pred             EEEEEecChh
Confidence            8999998754

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=2.1e-27  Score=235.88  Aligned_cols=180  Identities=23%  Similarity=0.260  Sum_probs=154.4

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ....+..+.+. ||+||+++++...........+++|+|++++.++|+|++++...+. +..||+ ++|+.++.||++++
T Consensus       344 ~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~-g~~Gel~v~g~~~~~gY~~~~  421 (563)
T PRK06710        344 ETVTGGKLVEG-YGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPP-GEIGEIVVKGPQIMKGYWNKP  421 (563)
T ss_pred             HHhhCCCEecc-cccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCC-CCceEEEEecCccchhhhCCh
Confidence            33456778888 9999998765433222223456899999999999999655544433 567888 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+...|. +|||+|||++++|++|+++++||.||+||++|.+|+|.+||++|.+||.|.+++|++.+++..|+.+++++
T Consensus       422 ~~~~~~~~-~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v  500 (563)
T PRK06710        422 EETAAVLQ-DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFV  500 (563)
T ss_pred             HHHhhhcc-cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEE
Confidence            99988886 89999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +..++...+.++++++++++|++|
T Consensus       501 ~~~~~~~~~~~~l~~~~~~~l~~~  524 (563)
T PRK06710        501 VLKEGTECSEEELNQFARKYLAAY  524 (563)
T ss_pred             EECCCCCCCHHHHHHHHHHhcccc
Confidence            988876678889999999998875

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=2.1e-27  Score=235.52  Aligned_cols=179  Identities=25%  Similarity=0.312  Sum_probs=153.8

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ...++.++.+. ||+||++++++...........++|+|+++++++|+|+++..++.  +..||+ ++|++++.||++++
T Consensus       348 ~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~  424 (557)
T PRK07059        348 LEMTGCPITEG-YGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPL--GEPGEICIRGPQVMAGYWNRP  424 (557)
T ss_pred             HHHhCCCeeec-cccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCC--CCceEEEEeCCccchhhhcCH
Confidence            34457888888 999999877654332222345789999999999999987665543  467898 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+.+.|..+|||+|||++++++||++++.||.+|+||++|++|+|.+||++|.+||+|.+++|++.++...|+.+++++
T Consensus       425 ~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v  504 (557)
T PRK07059        425 DETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFV  504 (557)
T ss_pred             HHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEE
Confidence            99988887799999999999999999999999999999999999999999999999999999999999988888999998


Q ss_pred             EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +..+ ...+.++++++++++|++|
T Consensus       505 ~~~~-~~~~~~~l~~~~~~~l~~~  527 (557)
T PRK07059        505 VKKD-PALTEEDVKAFCKERLTNY  527 (557)
T ss_pred             EeCC-CCCCHHHHHHHHHHhcccc
Confidence            8654 3467789999999998875

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=2.5e-27  Score=233.99  Aligned_cols=176  Identities=18%  Similarity=0.189  Sum_probs=148.2

Q ss_pred             CCCCccccccCCcccccccccccccc----------cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSF----------ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~  253 (365)
                      ..+..+++. ||+||++..++.....          ......++|+|+|+++++|+|+++..++.+.+..||+ ++|+++
T Consensus       316 ~~~~~l~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~  394 (539)
T PRK07008        316 EYGVEVIHA-WGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWV  394 (539)
T ss_pred             HhCCceecc-cccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCcc
Confidence            346778888 9999998654422110          0012467899999999999998777665554567898 999999


Q ss_pred             cccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCC
Q psy13046        254 MKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  333 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  333 (365)
                      +.||+++++   ..+. +|||+|||++++|+||++++.||.||+||++|.+|+|.|||++|.+||.|.++++++.++...
T Consensus       395 ~~gy~~~~~---~~~~-~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~  470 (539)
T PRK07008        395 IDRYFRGDA---SPLV-DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKW  470 (539)
T ss_pred             chhhcCChh---hhhc-CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchh
Confidence            999999984   3354 799999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        334 GEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       334 g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++.++++|+..++...+.++++++++++|++|
T Consensus       471 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  502 (539)
T PRK07008        471 DERPLLVVVKRPGAEVTREELLAFYEGKVAKW  502 (539)
T ss_pred             ccceEEEEEeCCCCccCHHHHHHHHHhhcccc
Confidence            88999999888776678899999999999876

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.95  E-value=2.1e-27  Score=234.50  Aligned_cols=177  Identities=22%  Similarity=0.213  Sum_probs=150.2

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEee-cCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIF-EHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ...+..+.+. ||+||+................++|+|+ |++.++|+|+++.+++.  +..||+ ++|+.++.|||+++
T Consensus       322 ~~~g~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~--g~~Gel~v~g~~~~~GY~~~~  398 (536)
T PRK10946        322 AELGCQLQQV-FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQ--GEVGRLMTRGPYTFRGYYKSP  398 (536)
T ss_pred             HhcCCeEEEe-ecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCC--CCccEEEEecCccchhhcCCc
Confidence            3446778888 9999975433221111123457899999 79999999977655443  578888 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.|.+.|..++||+|||+|++|++|++++.||.+|++|++|++|+|.+||++|.+||+|.+++|++.+++..|+.+++++
T Consensus       399 ~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  478 (536)
T PRK10946        399 QHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFL  478 (536)
T ss_pred             ccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEE
Confidence            99999998899999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcc-cCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGK-VSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~-l~~y  365 (365)
                      +++++  .+.++++++++++ |++|
T Consensus       479 v~~~~--~~~~~l~~~~~~~~l~~~  501 (536)
T PRK10946        479 VVKEP--LKAVQLRRFLREQGIAEF  501 (536)
T ss_pred             EeCCC--CCHHHHHHHHHhCCcccc
Confidence            98764  6788999999886 8765

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=2.3e-27  Score=232.26  Aligned_cols=179  Identities=23%  Similarity=0.244  Sum_probs=149.4

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ..+.+..+.+. ||+||++.++...........+++|+|+++ .++|+|+++..++  .+..||+ ++|++++.||+++|
T Consensus       291 ~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~  366 (501)
T PRK13390        291 IDWLGPIVYEY-YSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELP--AGRIGTVYFERDRLPFRYLNDP  366 (501)
T ss_pred             HHhcCCceeee-ecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCC--CCCceEEEEecCCccccccCCh
Confidence            34456677777 999999765443222112345689999999 6999997766543  4578898 99999999999999


Q ss_pred             cccccccCC--CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        262 ARVKAPDRK--KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       262 ~~~~~~~~~--~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +.|.+.|..  ++||+|||++++|+||++++.||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..++.+++
T Consensus       367 ~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~  446 (501)
T PRK13390        367 EKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKA  446 (501)
T ss_pred             hhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEE
Confidence            999887753  689999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEEcCCCCCC---HHHHHHHHHcccCCC
Q psy13046        340 SIKLKENAKLN---ADDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~~~---~~~l~~~~~~~l~~y  365 (365)
                      ++++.++...+   .++++++++++|+.|
T Consensus       447 ~v~~~~~~~~~~~~~~~l~~~~~~~l~~~  475 (501)
T PRK13390        447 VIQLVEGIRGSDELARELIDYTRSRIAHY  475 (501)
T ss_pred             EEEecCCCCcchhhHHHHHHHHHHhcccC
Confidence            99987654333   358999999999876

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.95  E-value=3e-27  Score=232.82  Aligned_cols=176  Identities=17%  Similarity=0.140  Sum_probs=147.4

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEccc-ceeccCC----------ceeeEE-e-e
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIV-NSVLYNF----------KWINQV-S-S  249 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~-~~~~~~~----------~~~gei-~-~  249 (365)
                      ....+..+.+. ||+||++........   ...+++|.|+++  ++|+|++. ..++.+.          +..||+ + +
T Consensus       286 ~~~~g~~l~~~-YG~TE~~~~~~~~~~---~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~  359 (529)
T PRK07867        286 ARRFGCVVVDG-FGSTEGGVAITRTPD---TPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTA  359 (529)
T ss_pred             HHHhCCcEEEe-ecccccccccccCCC---CCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEec
Confidence            33446778888 999999765442221   345678999999  77888643 3332221          116887 6 9


Q ss_pred             cCcccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeec
Q psy13046        250 QTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP  329 (365)
Q Consensus       250 g~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~  329 (365)
                      |++++.||+++++.+.+.|. +|||+|||+++++++|+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+
T Consensus       360 g~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~  438 (529)
T PRK07867        360 GPGGFEGYYNDPEADAERMR-GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVP  438 (529)
T ss_pred             CCcccccccCChHhhhhhhc-CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEecc
Confidence            99999999999999988887 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcc--cCCC
Q psy13046        330 DERMGEEVGISIKLKENAKLNADDIRTFCKGK--VSKF  365 (365)
Q Consensus       330 ~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~--l~~y  365 (365)
                      ++..|+.+++++++.++...+.++++++|+++  |++|
T Consensus       439 ~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~  476 (529)
T PRK07867        439 DPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPK  476 (529)
T ss_pred             CCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcc
Confidence            99899999999999887778889999999875  7765

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.95  E-value=2e-27  Score=234.13  Aligned_cols=176  Identities=22%  Similarity=0.224  Sum_probs=151.8

Q ss_pred             CCCccccccCCccccccccccccc-------ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQS-------FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~-------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      .+..+.+. ||+||++..++....       ......+++|+|+++++++|+|+++.++.  .+..||+ ++|+.++.||
T Consensus       304 ~g~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~--~g~~Gel~i~~~~~~~gy  380 (528)
T PRK07470        304 LGKVLVQY-FGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELP--PGETGEICVIGPAVFAGY  380 (528)
T ss_pred             hCcHHHHh-CCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCC--CCCceEEEEeCCccchhh
Confidence            45667777 999999765542211       01134568899999999999998776654  3578998 9999999999


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      +++++.+++.|. +|||+|||+++++++|++++.||.||+||++|++|+|.+||++|.+++.|.+++|++.+++..|+.+
T Consensus       381 ~~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~  459 (528)
T PRK07470        381 YNNPEANAKAFR-DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVG  459 (528)
T ss_pred             cCCHHHHHhhhc-CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCcee
Confidence            999999988886 8999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        338 GISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       338 ~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++..++...+.++++++|+++|++|
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~  487 (528)
T PRK07470        460 VAVCVARDGAPVDEAELLAWLDGKVARY  487 (528)
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHhhhcC
Confidence            9999988776678899999999999876

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.8e-27  Score=233.99  Aligned_cols=181  Identities=27%  Similarity=0.356  Sum_probs=157.3

Q ss_pred             hhccCCCCccccccCCcccccccccccccc-cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSF-ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +...+++..+.+. ||+||+++++...... .....+++|+|+++++++|+|+++.+++.  +..||+ ++|++++.||+
T Consensus       306 ~~~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~--g~~Gei~v~~~~~~~~y~  382 (523)
T PRK08316        306 LRERLPGLRFYNC-YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAP--GEVGEIVHRSPQLMLGYW  382 (523)
T ss_pred             HHHHcCCCceeee-ecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCC--CCcceEEEECCchhhhhc
Confidence            3445678888999 9999998766533221 12445789999999999999977665544  578898 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++++.+++.|. ++||+|||+|++++||++++.||.||+||++|.+|+|.+||+.|.++++|.+++|++.+++..++.++
T Consensus       383 ~~~~~~~~~~~-~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~  461 (523)
T PRK08316        383 DDPEKTAEAFR-GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVT  461 (523)
T ss_pred             CCHHHHHHHhh-CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEE
Confidence            99999988886 89999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++++++...+.+++.++++++|++|
T Consensus       462 ~~v~~~~~~~~~~~~l~~~~~~~l~~~  488 (523)
T PRK08316        462 AVVVPKAGATVTEDELIAHCRARLAGF  488 (523)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhcccC
Confidence            999998776677889999999998875

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.95  E-value=2.4e-27  Score=234.14  Aligned_cols=176  Identities=16%  Similarity=0.124  Sum_probs=145.0

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEeecCeeEE-----------EEEcccceeccCCceeeEE-ee-c
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLE-----------LVLYIVNSVLYNFKWINQV-SS-Q  250 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-----------i~d~~~~~~~~~~~~~gei-~~-g  250 (365)
                      +..+..+.+. ||+||++.++....   ....+++|+|+|++++.           ++|.++..+. ..+..||+ ++ |
T Consensus       285 ~~~~~~l~~~-YG~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~-~~~~~GEl~v~~g  359 (540)
T PRK13388        285 RRFGCQVEDG-YGSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLN-ADEAIGELVNTAG  359 (540)
T ss_pred             HHhCCceecc-cccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCccccceeccCcccccc-CCCcceEEEEecC
Confidence            3446778888 99999986655322   13457899999996542           2332222222 22457887 76 9


Q ss_pred             CcccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecC
Q psy13046        251 TMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD  330 (365)
Q Consensus       251 ~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  330 (365)
                      ++++.||+++|+.+.+.|. +|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||+|.+|+|++.++
T Consensus       360 ~~~~~gY~~~~~~t~~~~~-~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~  438 (540)
T PRK13388        360 AGFFEGYYNNPEATAERMR-HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPD  438 (540)
T ss_pred             CcccccccCChHHHHHHhh-cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccC
Confidence            9999999999999998886 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEEEEcCCCCCCHHHHHHHHHcc--cCCC
Q psy13046        331 ERMGEEVGISIKLKENAKLNADDIRTFCKGK--VSKF  365 (365)
Q Consensus       331 ~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~--l~~y  365 (365)
                      +..|+.+++++++.++...+.++++++++.+  |++|
T Consensus       439 ~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~  475 (540)
T PRK13388        439 ERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTK  475 (540)
T ss_pred             CCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcc
Confidence            8888899999998887777888999999864  7764

>PRK12467 peptide synthase; Provisional

Probab=99.95  E-value=7.6e-28  Score=278.94  Aligned_cols=179  Identities=13%  Similarity=0.039  Sum_probs=152.2

Q ss_pred             ccCCCCccccccCCcccccccccccccccc----cccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFEC----RRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      ..+++..+.+. ||+||++..++.......    ....++|+|+++++++|+|+++++++  .+..||+ ++|+++++||
T Consensus      3373 ~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp--~G~~GEL~i~G~~v~~GY 3449 (3956)
T PRK12467       3373 RKLKPRGLTNG-YGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVP--VGVAGELYIGGVGLARGY 3449 (3956)
T ss_pred             HhCCCCEEEeC-cccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCC--CCCCceEEEcchhhhhhc
Confidence            34677788888 999999876653221111    23468999999999999997766654  3588998 9999999999


Q ss_pred             cCCCcccccccCCCC-------eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecC
Q psy13046        258 RGLPARVKAPDRKKC-------SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD  330 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g-------~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  330 (365)
                      +++|+.|+++|..++       ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++..+
T Consensus      3450 ~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~ 3529 (3956)
T PRK12467       3450 HQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG 3529 (3956)
T ss_pred             cCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC
Confidence            999999999996544       6999999999999999999999999999999999999999999999999999998754


Q ss_pred             CCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        331 ERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       331 ~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      . .++.++|+|++........++++++++++||.|
T Consensus      3530 ~-~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y 3563 (3956)
T PRK12467       3530 A-GGKQLVAYVVPADPQGDWRETLRDHLAASLPDY 3563 (3956)
T ss_pred             C-CCcEEEEEEeCCCCCcccHHHHHHHHhccCChh
Confidence            4 578899999987655567789999999999987

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.95  E-value=4e-27  Score=236.74  Aligned_cols=179  Identities=17%  Similarity=0.087  Sum_probs=145.9

Q ss_pred             cCCCCccccccCCcccccccc-ccccc--ccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecC---cccc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFL-EVVQS--FECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQT---MAMK  255 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~-~~~~~--~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~---~~~~  255 (365)
                      ...+..+.+. ||+||++..+ .....  ......+++|+|+|+++++|+|+ ++.+++  .+..||+ ++||   +++.
T Consensus       377 ~~~~~~v~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~--~g~~Gel~i~gp~~~~~~~  453 (629)
T PRK10524        377 EALGVPVIDN-YWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCG--PNEKGVLVIEGPLPPGCMQ  453 (629)
T ss_pred             HhcCCCeEec-cccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCC--CCCcEEEEEcCCCChhhcC
Confidence            3445778888 9999997422 22111  11234578999999999999998 565543  3577898 8897   6889


Q ss_pred             cccCCCcccccccC---CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCC
Q psy13046        256 SKRGLPARVKAPDR---KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  332 (365)
Q Consensus       256 gY~~~~~~~~~~~~---~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~  332 (365)
                      |||++++.+.+.+-   .++||+|||++++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++.
T Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~  533 (629)
T PRK10524        454 TVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDAL  533 (629)
T ss_pred             CccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCC
Confidence            99999987665431   368999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcEEEEEEEEcCCCCCC--------HHHHHHHHHcccCCC
Q psy13046        333 MGEEVGISIKLKENAKLN--------ADDIRTFCKGKVSKF  365 (365)
Q Consensus       333 ~g~~~~a~v~~~~~~~~~--------~~~l~~~~~~~l~~y  365 (365)
                      .|+.++++|+++++...+        .++|+++++++|++|
T Consensus       534 ~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~  574 (629)
T PRK10524        534 KGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAV  574 (629)
T ss_pred             CCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCC
Confidence            899999999988654322        367899999999875

>PRK12316 peptide synthase; Provisional

Probab=99.95  E-value=1.5e-27  Score=280.68  Aligned_cols=177  Identities=15%  Similarity=0.090  Sum_probs=151.8

Q ss_pred             hccCCCCccccccCCcccccccccccc-cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQ-SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      ...+++..+.+. ||+||++..++... ........++|+|+++++++|+|+++.+++  .+..||+ ++|+++++||++
T Consensus       791 ~~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p--~G~~GEl~i~G~~v~~GYl~  867 (5163)
T PRK12316        791 FAKLPQAGLYNL-YGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVP--VGVLGELYLAGRGLARGYHG  867 (5163)
T ss_pred             HHhCCCCeEEeC-cCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCC--CCCceEEEecccccChhhCC
Confidence            345678889999 99999986544221 111234567999999999999998776554  3578998 999999999999


Q ss_pred             CCcccccccCC------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCC
Q psy13046        260 LPARVKAPDRK------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  333 (365)
Q Consensus       260 ~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  333 (365)
                      +|+.|+++|..      ++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+    
T Consensus       868 ~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----  943 (5163)
T PRK12316        868 RPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----  943 (5163)
T ss_pred             ChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----
Confidence            99999998842      45999999999999999999999999999999999999999999999999999999986    


Q ss_pred             CcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        334 GEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       334 g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++.++|+|+++++.....++++++++++||+|
T Consensus       944 ~~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y  975 (5163)
T PRK12316        944 GKQLVGYVVLESEGGDWREALKAHLAASLPEY  975 (5163)
T ss_pred             CCeEEEEEEccCCCCCCHHHHHHHHHhhCCCc
Confidence            57899999988766677889999999999987

>PRK12316 peptide synthase; Provisional

Probab=99.95  E-value=3.8e-27  Score=277.19  Aligned_cols=178  Identities=15%  Similarity=0.070  Sum_probs=153.0

Q ss_pred             cCCCCccccccCCcccccccccccccc-cc---cccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccccc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSF-EC---RRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~-~~---~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      .+++..+++. ||+|||+..++..... ..   ....++|+|+++++++|+|++++.++  .+..||+ ++|+++++||+
T Consensus      2284 ~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp--~g~~GEl~i~G~~v~~GY~ 2360 (5163)
T PRK12316       2284 ALRPVYLFNG-YGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLA--PGMAGELYLGGEGLARGYL 2360 (5163)
T ss_pred             hCCCcEEEEC-ccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCCCCC--CCCeeEEEecchhhccccc
Confidence            4577788888 9999998765532111 11   12357999999999999998776554  4588998 99999999999


Q ss_pred             CCCcccccccCC-------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046        259 GLPARVKAPDRK-------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  331 (365)
Q Consensus       259 ~~~~~~~~~~~~-------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  331 (365)
                      ++|+.|+++|..       ++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++.++.
T Consensus      2361 ~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~ 2440 (5163)
T PRK12316       2361 NRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA 2440 (5163)
T ss_pred             CChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC
Confidence            999999999842       3599999999999999999999999999999999999999999999999999999998776


Q ss_pred             CCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        332 RMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       332 ~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                       .++.++|+|++.++...+.++++++++++||.|
T Consensus      2441 -~~~~l~a~v~~~~~~~~~~~~l~~~l~~~Lp~~ 2473 (5163)
T PRK12316       2441 -SGKQLVAYVVPDDAAEDLLAELRAWLAARLPAY 2473 (5163)
T ss_pred             -CCeEEEEEEEecCCCccCHHHHHHHHHhhCchh
Confidence             678999999998877778899999999999987

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.95  E-value=5e-27  Score=232.26  Aligned_cols=177  Identities=19%  Similarity=0.206  Sum_probs=148.9

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      .+..+++. ||+||++......... .....++|+|+|+++++|+|++.+...+ .+..||+ ++|++++.||+++++.+
T Consensus       329 ~~~~~~~~-YG~tE~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~-~g~~Gel~v~g~~~~~gY~~~~~~t  405 (546)
T PRK08314        329 TGLDYVEG-YGLTETMAQTHSNPPD-RPKLQCLGIPTFGVDARVIDPETLEELP-PGEVGEIVVHGPQVFKGYWNRPEAT  405 (546)
T ss_pred             cCCcEEec-ccccccccceecCCCc-CCCCCccCcccCCeEEEEEeCCCCcCCC-CCCceEEEEECCchhccccCChhHh
Confidence            35678888 9999997655433221 1345689999999999999975443333 3467898 99999999999999998


Q ss_pred             ccccCC---CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        265 KAPDRK---KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       265 ~~~~~~---~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      .+.|..   ++||+|||+|++|++|++++.||.||+||++|.+|+|.|||++|.++|+|.+++|++.++...++.+++++
T Consensus       406 ~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v  485 (546)
T PRK08314        406 AEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVV  485 (546)
T ss_pred             hhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEE
Confidence            887742   45999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             EEcCCC--CCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENA--KLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~--~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++.  ..+.++++++|+++|++|
T Consensus       486 ~~~~~~~~~~~~~~l~~~~~~~l~~~  511 (546)
T PRK08314        486 VLRPEARGKTTEEEIIAWAREHMAAY  511 (546)
T ss_pred             EECCCCCCCCCHHHHHHHHHHhcccC
Confidence            987653  345689999999999876

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.95  E-value=3.5e-27  Score=234.07  Aligned_cols=180  Identities=23%  Similarity=0.240  Sum_probs=152.4

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      +....+..+.+. ||+||++..++..........+++|.|++++.++|+|+++..++.  +..||+ ++|+.+++||+++
T Consensus       349 ~~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~--g~~Gel~v~~~~~~~gy~~~  425 (560)
T PRK08751        349 WKQVTGLTLVEA-YGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAI--GEIGELCIKGPQVMKGYWKR  425 (560)
T ss_pred             HHHHhCCeEEEe-eccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCC--CCceEEEEecCccchhhcCC
Confidence            344456778888 999999876553322222345678999999999999977665533  467998 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      ++.+.+.|..+|||+|||++++|++|++++.||.+|+||++|.+|+|.+||++|.+||+|.+++|++.++...|+.+.++
T Consensus       426 ~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~  505 (560)
T PRK08751        426 PEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVV  505 (560)
T ss_pred             hhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEE
Confidence            99999888778999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++.. +...+.++++++++++|++|
T Consensus       506 v~~~-~~~~~~~~l~~~~~~~l~~~  529 (560)
T PRK08751        506 IVKK-DPALTAEDVKAHARANLTGY  529 (560)
T ss_pred             EEcC-CCCCCHHHHHHHHHHhhhhc
Confidence            7754 34567789999999998875

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.95  E-value=5.3e-27  Score=230.28  Aligned_cols=182  Identities=16%  Similarity=0.201  Sum_probs=154.0

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      +...+++..+.+. ||+||++..+...........+++|+|+|+++++|+|+++..+.  .+..||+ ++|+.++.|||+
T Consensus       294 ~~~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~--~~~~Gel~v~g~~~~~gy~~  370 (515)
T TIGR03098       294 LRSFLPNARLFLM-YGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECA--PGEEGELVHRGALVAMGYWN  370 (515)
T ss_pred             HHHHCCCCeEeee-eccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCC--CCCceEEEEcCchhhccccC
Confidence            3345667788888 99999976544333222345678999999999999997766553  3467898 999999999999


Q ss_pred             CCcccccccCC-----------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEee
Q psy13046        260 LPARVKAPDRK-----------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGV  328 (365)
Q Consensus       260 ~~~~~~~~~~~-----------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~  328 (365)
                      +++.+.+.|..           ++||+|||++++|++|++++.||.||+||++|.+|+|.+||++|.+||.|.+++|++.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~  450 (515)
T TIGR03098       371 DPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGV  450 (515)
T ss_pred             CchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEec
Confidence            99988766642           3489999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        329 PDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       329 ~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++..|+.++++++...+...+.++++++++++|++|
T Consensus       451 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~  487 (515)
T TIGR03098       451 PDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNY  487 (515)
T ss_pred             cCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccc
Confidence            9998899999999877666678889999999999875

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.94  E-value=2.6e-27  Score=237.27  Aligned_cols=144  Identities=19%  Similarity=0.169  Sum_probs=123.3

Q ss_pred             ceeeEeecCeeEEEEEcc-cceeccCCceeeEE-eecCcccccccCCCcccccccC------------------CCCeee
Q psy13046        216 QVVLHIFEHLFLELVLYI-VNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKAPDR------------------KKCSQR  275 (365)
Q Consensus       216 ~~~G~~~~~~~~~i~d~~-~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~------------------~~g~~~  275 (365)
                      .++|+|+|+++++|+|++ +.+++  .+..||+ ++|++++.|||++|+.|++.|.                  .++||+
T Consensus       402 ~~~G~~~~g~~v~ivd~~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~  479 (612)
T PRK12476        402 VSCGQVARSQWAVIVDPDTGAELP--DGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLR  479 (612)
T ss_pred             EeCCCcCCCCEEEEEeCCCCcCCC--CCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeee
Confidence            578999999999999987 55543  3578998 9999999999999999988874                  135999


Q ss_pred             cCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHc-CCCeeE--EEEEeecCCCCCcEEEEEEEEcCCCC-CCH
Q psy13046        276 PRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPDERMGEEVGISIKLKENAK-LNA  351 (365)
Q Consensus       276 TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~--~~v~~~~~~~~g~~~~a~v~~~~~~~-~~~  351 (365)
                      |||+|+++ ||+|+|+||+||+||++|++|+|.|||++|.+ ||.|.+  ++|++++++. ++.++++++++++.. .+.
T Consensus       480 TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~  557 (612)
T PRK12476        480 TGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADP  557 (612)
T ss_pred             ccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccH
Confidence            99999984 99999999999999999999999999999985 899999  7778888886 788999999877542 566


Q ss_pred             HHHHHHHHcccC
Q psy13046        352 DDIRTFCKGKVS  363 (365)
Q Consensus       352 ~~l~~~~~~~l~  363 (365)
                      ++|.++++++|+
T Consensus       558 ~~l~~~~~~~l~  569 (612)
T PRK12476        558 APAIDAIRAAVS  569 (612)
T ss_pred             HHHHHHHHHHHH
Confidence            777777777655

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.94  E-value=6.7e-27  Score=238.27  Aligned_cols=172  Identities=13%  Similarity=0.098  Sum_probs=139.8

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC--
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG--  259 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~--  259 (365)
                      ....+..+.+. ||+||++++++..... ....+++|+|+||++++|+|.++.      +..||+ ++|++++.|||+  
T Consensus       500 ~~~~g~~l~~~-YG~TE~~~~~~~~~~~-~~~~~svG~p~pg~~~~i~d~~~~------~~~Gel~v~g~~v~~GY~~~e  571 (718)
T PRK08043        500 QDKFGLRILEG-YGVTECAPVVSINVPM-AAKPGTVGRILPGMDARLLSVPGI------EQGGRLQLKGPNIMNGYLRVE  571 (718)
T ss_pred             HHHcCCCeecc-cCcccccceEEecCCc-ccCCCCCCCcCCCCeeEEecCCCC------CCceEEEEecCCccccccCCC
Confidence            33456778888 9999998766533222 245678999999999999986532      245887 999999999998  


Q ss_pred             CCcc-------cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCC
Q psy13046        260 LPAR-------VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  332 (365)
Q Consensus       260 ~~~~-------~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~  332 (365)
                      +++.       +.+.+..+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+|+.+.+++|++.+++.
T Consensus       572 ~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~  651 (718)
T PRK08043        572 KPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDAS  651 (718)
T ss_pred             CcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCC
Confidence            4442       222233479999999999999999999999999999999999999999999999988889999999988


Q ss_pred             CCcEEEEEEEEcCCCCCCHHHHHHHHHcc-cCCC
Q psy13046        333 MGEEVGISIKLKENAKLNADDIRTFCKGK-VSKF  365 (365)
Q Consensus       333 ~g~~~~a~v~~~~~~~~~~~~l~~~~~~~-l~~y  365 (365)
                      .|+.+++++.   +...+.++++++++++ |+.|
T Consensus       652 ~ge~~v~~~~---~~~~~~~~l~~~~~~~~l~~~  682 (718)
T PRK08043        652 KGEALVLFTT---DSELTREKLQQYAREHGVPEL  682 (718)
T ss_pred             CCceEEEEEc---CcccCHHHHHHHHHhcCCCcc
Confidence            8998888764   2346778999999987 8876

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=6.5e-27  Score=231.27  Aligned_cols=181  Identities=22%  Similarity=0.333  Sum_probs=154.9

Q ss_pred             hhccCCCCccccccCCcccccccccccccc-cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSF-ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +...+++..+.+. ||+||++++....... ......++|+|+|++.++|+|+++.++.  .+..||+ ++|+.++.||+
T Consensus       310 ~~~~~~~~~l~~~-YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~g~~Gel~v~g~~~~~gy~  386 (542)
T PRK07786        310 MAATFPEAQILAA-FGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVP--VGEVGEIVYRAPTLMSGYW  386 (542)
T ss_pred             HHHHcCCCeEEee-ecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCc--CCCceEEEEEChhhhhhhc
Confidence            3456778889999 9999998765532221 1234578999999999999997765543  3567898 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++++.+...|. +|||+|||+++++++|+++++||.||+||++|.+|+|.+||++|.+||.|.+++|++.+++..++.++
T Consensus       387 ~~~~~~~~~f~-~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~  465 (542)
T PRK07786        387 NNPEATAEAFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPV  465 (542)
T ss_pred             CCHHHHHHHhh-CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEE
Confidence            99999998886 89999999999999999999999999999999999999999999999999999999999888888999


Q ss_pred             EEEEEcCCC-CCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENA-KLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~-~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++++++. ....+++++++++++++|
T Consensus       466 ~~v~~~~~~~~~~~~~l~~~l~~~l~~~  493 (542)
T PRK07786        466 AVAAVRNDDAALTLEDLAEFLTDRLARY  493 (542)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHhhccCC
Confidence            999887643 356789999999999876

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.94  E-value=1.7e-26  Score=228.17  Aligned_cols=179  Identities=23%  Similarity=0.238  Sum_probs=150.1

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEE--cccceeccCCceeeEE-eecCcccccccC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVL--YIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d--~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      ....+..+.+. ||+||++..++..........+++|+|++++.++|++  ++++.+  ..+..||+ ++|++++.||++
T Consensus       333 ~~~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~--~~g~~Gel~v~~~~~~~gy~~  409 (541)
T TIGR03205       333 ERKTGLKLKSG-WGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVL--PPGEVGELRIRGPNVTRGYWN  409 (541)
T ss_pred             HHHhCCCeecc-cccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccC--CCCCeeEEEEecCCccccccC
Confidence            34456778888 9999998665533222223456899999999998875  333333  23568898 999999999999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +|+.+.+.|. ++||+|||+++++++|+++|+||.||+||++|++|+|.+||+++.+|+.|.+++|++.+++..++.+++
T Consensus       410 ~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~  488 (541)
T TIGR03205       410 RPEESAEAFV-GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKA  488 (541)
T ss_pred             ChhhhHhhhc-cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEE
Confidence            9999988887 789999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             EEEEcCCCC-CCHHHHHHHHHcccCCC
Q psy13046        340 SIKLKENAK-LNADDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~-~~~~~l~~~~~~~l~~y  365 (365)
                      +++++++.. .+.++++++++++|++|
T Consensus       489 ~v~~~~~~~~~~~~~l~~~~~~~l~~~  515 (541)
T TIGR03205       489 FVKLRPGAKPFSLDELRAFLAGKLGKH  515 (541)
T ss_pred             EEEECCCCCcCCHHHHHHHHHhhcccc
Confidence            999876543 57789999999999876

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>KOG1176|consensus

Probab=99.94  E-value=7e-27  Score=224.78  Aligned_cols=144  Identities=29%  Similarity=0.312  Sum_probs=133.6

Q ss_pred             eccCCCCCCceEEEEecCchhhhhhcc------ccc-ccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHH
Q psy13046         10 ANQHSSRQKKAIHFRHFDSFLLFVELC------LLL-FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI   82 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~-~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l   82 (365)
                      .+.+++++.|||+++|+++|.||+++.      |.. |||+|||+|++|+||+++|++|.||+||++|.+|+|.|||++|
T Consensus       371 g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL  450 (537)
T KOG1176|consen  371 GVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVL  450 (537)
T ss_pred             CCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHH
Confidence            456778889999999999999999984      433 9999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         83 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        83 ~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+||.|.+++|+|+|++.+|+.++|+|+++++..++.+++.++++++++.+..+     ++..+.+++|++.+||+
T Consensus       451 ~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~-----~~V~Fvd~lPKs~~GKi  521 (537)
T KOG1176|consen  451 LTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLP-----GGVVFVDELPKTPNGKI  521 (537)
T ss_pred             HhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhcc-----CeEEEeccCCCCCcchH
Confidence            999999999999999999999999999999988899999999999999874433     77779999999999999

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.94  E-value=1.9e-26  Score=226.64  Aligned_cols=176  Identities=22%  Similarity=0.245  Sum_probs=147.9

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ....+..+.+. ||+||++..+............++|+|+|+++++|+|+++.++.  .+..||+ ++|+.++.||++++
T Consensus       313 ~~~~g~~v~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~g~~Gel~v~g~~~~~~Y~~~~  389 (516)
T PRK13383        313 MDTYGDILYNG-YGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVG--PRVTGRIFVGGELAGTRYTDGG  389 (516)
T ss_pred             HHHcCchhhhc-ccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCC--CCCceEEEEecCcccccccCCc
Confidence            33345678888 99999976554332222234578999999999999997765443  3567898 99999999999876


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      ..   .+. +|||+|||++++|++|++++.||.||+||++|.+|+|.+||++|.+||.|.++++++.++...++.+.++|
T Consensus       390 ~~---~~~-~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v  465 (516)
T PRK13383        390 GK---AVV-DGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFV  465 (516)
T ss_pred             hh---hee-cCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEE
Confidence            42   233 89999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++...+.++++++++++|++|
T Consensus       466 ~~~~~~~~~~~~l~~~~~~~l~~~  489 (516)
T PRK13383        466 VLHPGSGVDAAQLRDYLKDRVSRF  489 (516)
T ss_pred             EECCCCCCCHHHHHHHHHHhcccC
Confidence            988776677889999999998875

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=1.5e-26  Score=230.21  Aligned_cols=180  Identities=18%  Similarity=0.172  Sum_probs=148.5

Q ss_pred             cCCCCccccccCCccccccccccccccc-----c--cccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFE-----C--RRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK  255 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~-----~--~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~  255 (365)
                      ...+..+++. ||+||++..++......     .  ....++|++.++++++|+|+ +..+....+..||+ ++|++++.
T Consensus       320 ~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~~Gel~v~g~~~~~  397 (576)
T PRK05620        320 ERYGVDVVHV-WGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTA  397 (576)
T ss_pred             HHhCCceeee-ccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCCceEEEEEcCcccc
Confidence            3346778888 99999987654322111     0  11247899999999999996 55554444567998 99999999


Q ss_pred             cccCCCccc----------------ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCC
Q psy13046        256 SKRGLPARV----------------KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  319 (365)
Q Consensus       256 gY~~~~~~~----------------~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~  319 (365)
                      |||++++.+                ..+|..+|||+|||++++|+||+++|.||.||+||++|.+|+|.+||++|.+||.
T Consensus       398 gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~  477 (576)
T PRK05620        398 SYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPE  477 (576)
T ss_pred             cccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCC
Confidence            999999887                2334457999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeecCCCCCcEEEEEEEEcCCCC---CCHHHHHHHHHcccCCC
Q psy13046        320 VLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVSKF  365 (365)
Q Consensus       320 v~~~~v~~~~~~~~g~~~~a~v~~~~~~~---~~~~~l~~~~~~~l~~y  365 (365)
                      |.+++|++.+++..|+.+++++++.++..   .+.++|+++|+++|++|
T Consensus       478 v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~  526 (576)
T PRK05620        478 VVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNW  526 (576)
T ss_pred             ceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccc
Confidence            99999999999988999999999877643   34689999999999876

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.94  E-value=9.1e-27  Score=249.13  Aligned_cols=177  Identities=16%  Similarity=0.071  Sum_probs=146.8

Q ss_pred             cCCCCccccccCCcccccccccccccc---------cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSF---------ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~  253 (365)
                      ...+.++.+. ||+||++++++.....         .....+++|+|+|+++++|+|++++...+ .++.||+ ++|+++
T Consensus       920 ~~~g~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~-~g~~Gel~v~g~~~  997 (1146)
T PRK08633        920 EKFGIRILEG-YGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELP-PGEDGLILIGGPQV  997 (1146)
T ss_pred             HHhCCCeecc-cccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCC-CCCceEEEEcCCCc
Confidence            3346788888 9999998766532111         01245789999999999999976544443 3678998 999999


Q ss_pred             cccccCCCcccccccCC---CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCC--CeeEEEEEee
Q psy13046        254 MKSKRGLPARVKAPDRK---KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP--NVLEAYAYGV  328 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~~---~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~--~v~~~~v~~~  328 (365)
                      +.||+++|+.|++.+.+   +|||+|||++++|+||++++.||.||+||++|++|+|.|||++|.+||  .+.+++|++.
T Consensus       998 ~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~ 1077 (1146)
T PRK08633        998 MKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAV 1077 (1146)
T ss_pred             cccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEec
Confidence            99999999999888862   299999999999999999999999999999999999999999999998  4668999999


Q ss_pred             cCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046        329 PDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       329 ~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~-~l~~y  365 (365)
                      +++..|+.++++++..   ..+.+++++++++ ++++|
T Consensus      1078 ~~~~~g~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~ 1112 (1146)
T PRK08633       1078 PDEKKGEKLVVLHTCG---AEDVEELKRAIKESGLPNL 1112 (1146)
T ss_pred             cCCCCCcEEEEEEecC---ccCHHHHHHHHHhcCCCcc
Confidence            9999999999998862   3567889998875 57765

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.94  E-value=3.5e-26  Score=224.33  Aligned_cols=179  Identities=23%  Similarity=0.276  Sum_probs=151.8

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc-cccCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK-SKRGL  260 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~-gY~~~  260 (365)
                      ..+.+..+.+. ||+||++.+++..........+++|+|+|+++++|+|+++.+++  .+..||+ ++|++++. +|+++
T Consensus       292 ~~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~g~~Gel~v~~~~~~~~~y~~~  368 (509)
T PRK12406        292 IEWWGPVIYEY-YGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLP--QGEIGEIYSRIAGNPDFTYHNK  368 (509)
T ss_pred             HHHcCCcEEee-ccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCC--CCCceEEEEECCccccccccCC
Confidence            34456777877 99999987665332222234568999999999999997765543  3577887 89998875 99999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      ++.+...+. ++||+|||++++|++|++++.||.||+||++|.+|+|.+||+.|.++|+|.++++++.++...++.++++
T Consensus       369 ~~~~~~~~~-~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  447 (509)
T PRK12406        369 PEKRAEIDR-GGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAV  447 (509)
T ss_pred             chhcccccC-CCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEE
Confidence            998877664 8999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++.++...+.++++++++++|++|
T Consensus       448 v~~~~~~~~~~~~l~~~l~~~l~~~  472 (509)
T PRK12406        448 VEPQPGATLDEADIRAQLKARLAGY  472 (509)
T ss_pred             EEECCCCCCCHHHHHHHHHHhcccC
Confidence            9988766667899999999999876

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.94  E-value=2.1e-26  Score=229.22  Aligned_cols=175  Identities=21%  Similarity=0.233  Sum_probs=138.5

Q ss_pred             CCccccccCCccccccccccccc-------cc------ccccceeeEeecCeeEEEEEcccce-eccCCceeeEE-eecC
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQS-------FE------CRRYQVVLHIFEHLFLELVLYIVNS-VLYNFKWINQV-SSQT  251 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~-------~~------~~~~~~~G~~~~~~~~~i~d~~~~~-~~~~~~~~gei-~~g~  251 (365)
                      +..+.+. ||+||++..+.....       ..      ....+..+.++++  +++.|.++.. ++.+.+..||+ ++|+
T Consensus       324 g~~i~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~~~~GEl~v~g~  400 (579)
T PLN03102        324 GFQVMHA-YGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLAD--VDVKNKETQESVPRDGKTMGEIVIKGS  400 (579)
T ss_pred             CCeEEee-cCccccCccccccccccccccCCcccccccccCCCcccccccc--eEEeccccccccCCCCCCceEEEEECc
Confidence            6778887 999998754321100       00      0112333444444  5566654433 33333356898 9999


Q ss_pred             cccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046        252 MAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  331 (365)
Q Consensus       252 ~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  331 (365)
                      +++.|||++|+.+.+.|. +|||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||.|.+++|++.+++
T Consensus       401 ~~~~GY~~~~~~t~~~f~-~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~  479 (579)
T PLN03102        401 SIMKGYLKNPKATSEAFK-HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHP  479 (579)
T ss_pred             chhhhhcCChhhhHhhhc-cCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCc
Confidence            999999999999999887 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEEEcCCCCC----------CHHHHHHHHHcccCCC
Q psy13046        332 RMGEEVGISIKLKENAKL----------NADDIRTFCKGKVSKF  365 (365)
Q Consensus       332 ~~g~~~~a~v~~~~~~~~----------~~~~l~~~~~~~l~~y  365 (365)
                      ..++.++|+|+++++...          +..+++++++++|++|
T Consensus       480 ~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~  523 (579)
T PLN03102        480 TWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHF  523 (579)
T ss_pred             cccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccc
Confidence            889999999998765432          3568999999999986

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.94  E-value=2.8e-26  Score=222.11  Aligned_cols=158  Identities=17%  Similarity=0.217  Sum_probs=137.0

Q ss_pred             CCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVK  265 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~  265 (365)
                      +..+++. ||+||++........   ....++|+|+++++++|+|             ||+ ++|+.++.||+++++.+.
T Consensus       264 g~~~~~~-YG~tE~~~~~~~~~~---~~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~gY~~~~~~~~  326 (458)
T PRK09029        264 GIRCWCG-YGLTEMASTVCAKRA---DGLAGVGSPLPGREVKLVD-------------GEIWLRGASLALGYWRQGQLVP  326 (458)
T ss_pred             CCcEecc-ccccccCcceeccCC---CCCCCCCCCCCCCEEEEeC-------------CEEEEecCceeeeeecCccccc
Confidence            6778888 999999765442221   2234689999999999875             677 999999999999998876


Q ss_pred             cccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcC
Q psy13046        266 APDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  345 (365)
Q Consensus       266 ~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  345 (365)
                      ... .+|||+|||+|++| ||+++|.||+||+||++|.+|+|.|||++|.+||+|.+++|++.+++..++.++++|+++.
T Consensus       327 ~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~  404 (458)
T PRK09029        327 LVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS  404 (458)
T ss_pred             ccc-CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc
Confidence            544 48999999999999 9999999999999999999999999999999999999999999999988999999998763


Q ss_pred             CCCCCHHHHHHHHHcccCCC
Q psy13046        346 NAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       346 ~~~~~~~~l~~~~~~~l~~y  365 (365)
                        ..+.++|+++|+++|++|
T Consensus       405 --~~~~~~l~~~~~~~l~~~  422 (458)
T PRK09029        405 --EAAVVNLAEWLQDKLARF  422 (458)
T ss_pred             --ccCHHHHHHHHHhhchhc
Confidence              357789999999999876

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.94  E-value=7.2e-26  Score=212.28  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=133.3

Q ss_pred             CCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVK  265 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~  265 (365)
                      +..+.+. ||+||++..+.           ..|+|+|+++++|.|             |++ ++|+.++.||+++++.+ 
T Consensus       175 ~~~v~~~-YG~TE~~~~~~-----------~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY~~~~~~~-  228 (358)
T PRK07824        175 GINVVRT-YGMSETSGGCV-----------YDGVPLDGVRVRVED-------------GRIALGGPTLAKGYRNPVDPD-  228 (358)
T ss_pred             CCcEEec-ccCCccCCCcC-----------cCceeCCCCEEEecC-------------CEEEEecCccccccCCCcccc-
Confidence            6778888 99999875432           248999999999843             666 88999999999988754 


Q ss_pred             cccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcC
Q psy13046        266 APDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  345 (365)
Q Consensus       266 ~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  345 (365)
                       .|..+|||+|||++++ ++|+++|+||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.++++++.+.
T Consensus       229 -~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~  306 (358)
T PRK07824        229 -PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDG  306 (358)
T ss_pred             -cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCC
Confidence             3555889999999999 89999999999999999999999999999999999999999999999988999999998877


Q ss_pred             CCCCCHHHHHHHHHcccCCC
Q psy13046        346 NAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       346 ~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +.....++++++++++|+.|
T Consensus       307 ~~~~~~~~i~~~~~~~l~~~  326 (358)
T PRK07824        307 GPAPTLEALRAHVARTLDRT  326 (358)
T ss_pred             CCCcCHHHHHHHHHhhCccc
Confidence            66678899999999999876

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.94  E-value=4.6e-26  Score=223.00  Aligned_cols=183  Identities=10%  Similarity=-0.021  Sum_probs=146.0

Q ss_pred             cchhccCCCCccccccCCccccccccccccc---c-cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQS---F-ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~---~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~  253 (365)
                      ..+...+++..+.+. ||+||++...+....   . ......++|+++|+++++|+|+++..++.  +..||+ ++|+++
T Consensus       276 ~~~~~~~~~~~~~~~-yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~--g~~Gel~v~g~~~  352 (502)
T TIGR01734       276 KALLERFPKATIYNT-YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPE--GEKGEIVIVGPSV  352 (502)
T ss_pred             HHHHHHCCCcEEEeC-ccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCC--CCeeEEEEccccc
Confidence            334566788888888 999998654332111   1 11344679999999999999987665543  478898 999999


Q ss_pred             cccccCCCcccccccC---CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeec-
Q psy13046        254 MKSKRGLPARVKAPDR---KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP-  329 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~---~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~-  329 (365)
                      +.||+++++.+.+.|.   .++||+|||+|++|++ +++++||.+|+||++|++|+|.+||++|.++|.|.++++++.. 
T Consensus       353 ~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~  431 (502)
T TIGR01734       353 SKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYN  431 (502)
T ss_pred             cccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEc
Confidence            9999999999887762   2469999999999976 9999999999999999999999999999999999999999976 


Q ss_pred             CCCCCcEEEEEEEEcCCCCCC----HHHHHHHHHcccCCC
Q psy13046        330 DERMGEEVGISIKLKENAKLN----ADDIRTFCKGKVSKF  365 (365)
Q Consensus       330 ~~~~g~~~~a~v~~~~~~~~~----~~~l~~~~~~~l~~y  365 (365)
                      ....++.++++|+++......    .++++++++++|++|
T Consensus       432 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~  471 (502)
T TIGR01734       432 KDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAY  471 (502)
T ss_pred             CCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhh
Confidence            444567899999876533222    267889999888765

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.94  E-value=2.9e-26  Score=226.90  Aligned_cols=176  Identities=22%  Similarity=0.287  Sum_probs=149.0

Q ss_pred             CCccccccCCccccccccccccccc-ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFE-CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      +..+.+. ||+||++++........ .....++|+|++++.++|+|+++.+++  .+..||+ ++|++++.||+++++.+
T Consensus       326 ~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~  402 (547)
T PRK06087        326 GIKLLSV-YGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLP--PGCEGEEASRGPNVFMGYLDEPELT  402 (547)
T ss_pred             CCcEEEE-ecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCc--CCCcceEEEecccccccccCCHHHH
Confidence            7788888 99999987655332211 133467899999999999997776554  3467887 99999999999999999


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      ...|..+|||+|||++++|++|++++.||.+|+|+++|.+|+|.+||++|.++|+|.++++++.+++..|+.+++++++.
T Consensus       403 ~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~  482 (547)
T PRK06087        403 ARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLK  482 (547)
T ss_pred             HHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEEC
Confidence            88887789999999999999999999999999999999999999999999999999999999999988899999999987


Q ss_pred             C-CCCCCHHHHHHHHH-cccCCC
Q psy13046        345 E-NAKLNADDIRTFCK-GKVSKF  365 (365)
Q Consensus       345 ~-~~~~~~~~l~~~~~-~~l~~y  365 (365)
                      + ....+.+++.++++ ++|++|
T Consensus       483 ~~~~~~~~~~~~~~~~~~~l~~~  505 (547)
T PRK06087        483 APHHSLTLEEVVAFFSRKRVAKY  505 (547)
T ss_pred             CCCCCCCHHHHHHHHHhcccccc
Confidence            5 33456678888875 467654

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=5e-26  Score=222.84  Aligned_cols=177  Identities=24%  Similarity=0.259  Sum_probs=149.6

Q ss_pred             CCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      +.+..+.+. ||+||++.++...........+++|+|+ ++.++|+|++++.+.  .+..||+ ++|+.++.||+++++.
T Consensus       285 ~~~~~~~~~-yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~  360 (502)
T PRK08276        285 WWGPIIHEY-YASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILDEDGNELP--PGEIGTVYFEMDGYPFEYHNDPEK  360 (502)
T ss_pred             HhCcHhhhh-cccccccceeEecCccccccCCCcceec-ccEEEEECCCCCCCc--CCCceEEEEECCCccchhcCCHHH
Confidence            345667777 9999998765533222224456889999 889999997665443  3578898 9999999999999999


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      +...+.+++||+|||++++|++|.+++.||.||++|++|.+|+|.+||++|.+||+|.++++++..++..++.+.++|++
T Consensus       361 ~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~  440 (502)
T PRK08276        361 TAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQP  440 (502)
T ss_pred             HHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEE
Confidence            99988867999999999999999999999999999999999999999999999999999999999998889999999998


Q ss_pred             cCCCCCCH---HHHHHHHHcccCCC
Q psy13046        344 KENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       344 ~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      +++...+.   ++++++++++|++|
T Consensus       441 ~~~~~~~~~~~~~i~~~~~~~l~~~  465 (502)
T PRK08276        441 ADGADAGDALAAELIAWLRGRLAHY  465 (502)
T ss_pred             CCCCCCChhhHHHHHHHHHhhccCC
Confidence            76543333   47899999998865

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.94  E-value=5e-26  Score=224.04  Aligned_cols=175  Identities=22%  Similarity=0.315  Sum_probs=150.2

Q ss_pred             CCccccccCCcccccccccccccc-----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSF-----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~-----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      +..+.+. ||+||++..+......     ......++|+|+|+++++|+|+++.+++  .+..||+ ++|+.++.||+++
T Consensus       306 ~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~--~g~~Gel~v~~~~~~~gy~~~  382 (524)
T PRK06188        306 GPIFAQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVA--QGEVGEICVRGPLVMDGYWNR  382 (524)
T ss_pred             Cchhhhe-eCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCC--CCCeeEEEEECcchhhhhcCC
Confidence            4556777 9999996554422111     1134567899999999999998766554  3577888 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      ++.+...|. +|||+|||++++++||+++|.||.+|+||++|++|+|.+||++|.+|++|.+++|++.+++..++.+.++
T Consensus       383 ~~~~~~~~~-~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  461 (524)
T PRK06188        383 PEETAEAFR-DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAV  461 (524)
T ss_pred             hHHhhhhhc-CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEE
Confidence            999988886 8999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++++...+.++++++++++++.|
T Consensus       462 v~~~~~~~~~~~~l~~~~~~~l~~~  486 (524)
T PRK06188        462 VVLRPGAAVDAAELQAHVKERKGSV  486 (524)
T ss_pred             EEECCCCCCCHHHHHHHHHHhcccC
Confidence            9998776677889999999998765

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=4.1e-26  Score=224.14  Aligned_cols=177  Identities=27%  Similarity=0.362  Sum_probs=156.1

Q ss_pred             CCccccccCCcccccccccccccccc-----cccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFEC-----RRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~-----~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      +..+.+. ||+||++++.........     ....++|+|+|++.++|+|+++.+++.+.+..||+ ++|++++.||+++
T Consensus       306 ~~~v~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~  384 (521)
T PRK06187        306 GIDLVQG-YGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNR  384 (521)
T ss_pred             Ccchhee-eccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCC
Confidence            7788888 999999876653322211     25678999999999999998887776655788998 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      ++.+.+.|. ++||+|||+++++++|++++.||.+|++|++|.+++|.+||++|.++++|.+++|++.+++..++.+.++
T Consensus       385 ~~~~~~~~~-~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~  463 (521)
T PRK06187        385 PEATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAV  463 (521)
T ss_pred             HHHHHHHhh-CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEE
Confidence            998888887 7899999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++++++...+.++++++++++|++|
T Consensus       464 v~~~~~~~~~~~~l~~~l~~~l~~~  488 (521)
T PRK06187        464 VVLKPGATLDAKELRAFLRGRLAKF  488 (521)
T ss_pred             EEECCCCCCCHHHHHHHHHHhccCC
Confidence            9998877778899999999998865

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.93  E-value=4.9e-26  Score=246.16  Aligned_cols=180  Identities=13%  Similarity=0.046  Sum_probs=147.8

Q ss_pred             ccCCCCccccccCCccccccccccccccc------ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFE------CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK  255 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~  255 (365)
                      ....+..+.+. ||+||++..++......      .....++|+|+++++++|+|+++++++.  +..||+ ++|+++++
T Consensus       738 ~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~--g~~Gel~i~g~~~~~  814 (1296)
T PRK10252        738 QQLTGAPLHNL-YGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPP--GVAGDLYLTGIQLAQ  814 (1296)
T ss_pred             HhcCCCEEEeC-CCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCC--CCceEEEecccccch
Confidence            34457788888 99999986655322111      1234578999999999999977766654  478998 99999999


Q ss_pred             cccCCCcccccccCC------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeec
Q psy13046        256 SKRGLPARVKAPDRK------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP  329 (365)
Q Consensus       256 gY~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~  329 (365)
                      ||+++|+.|++.|..      ++||+|||+|++++||+++|+||+|++||++|+||+|.|||++|.+||+|.+++|++..
T Consensus       815 GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~  894 (1296)
T PRK10252        815 GYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACV  894 (1296)
T ss_pred             hhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEe
Confidence            999999999998853      34999999999999999999999999999999999999999999999999999887652


Q ss_pred             ----CCCCC--cEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        330 ----DERMG--EEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       330 ----~~~~g--~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                          +...|  ..++++|+...+...+.++|+++++++||+|
T Consensus       895 ~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~  936 (1296)
T PRK10252        895 INQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPH  936 (1296)
T ss_pred             ccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchh
Confidence                11122  3799999987665667889999999999986

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.93  E-value=7e-27  Score=234.19  Aligned_cols=162  Identities=13%  Similarity=0.038  Sum_probs=132.6

Q ss_pred             CccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccccc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKA  266 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~  266 (365)
                      ..+.+. ||+||++++++..... ....+++|+|+||++++|+|++         ..||+ ++||++|.|||++|+.|++
T Consensus       366 ~~l~~~-YG~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~d~~---------~~GEi~vrg~~v~~GY~~~p~~t~~  434 (614)
T PRK08180        366 IRMMTG-LGMTETAPSATFTTGP-LSRAGNIGLPAPGCEVKLVPVG---------GKLEVRVKGPNVTPGYWRAPELTAE  434 (614)
T ss_pred             ceeeee-ecccccCCceEecccc-cCCCCcccCccCCcEEEEecCC---------CCcEEEEecCccchhhcCChhHhHh
Confidence            456777 9999998766533222 2456789999999999999742         34787 9999999999999999999


Q ss_pred             ccCCCCeeecCceEEE----ccCCcEEEEeecCceEE-eCceEeC--hHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        267 PDRKKCSQRPRYQFVL----REDGYGQVVGRIKDMII-RGGENIY--PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       267 ~~~~~g~~~TGD~~~~----~~~G~l~i~GR~~d~i~-~~G~~v~--~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      .|+.+|||+|||+|++    |++|+++|+||+||+|| .+|++|+  |.|+|.++.+||.|.+++|++.+++    .+.|
T Consensus       435 ~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a  510 (614)
T PRK08180        435 AFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGL  510 (614)
T ss_pred             hcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEE
Confidence            9987999999999999    56899999999999888 5798776  7899999999999999999999876    4778


Q ss_pred             EEEEcCCC---------------CCCHHHHHHHHHcccCC
Q psy13046        340 SIKLKENA---------------KLNADDIRTFCKGKVSK  364 (365)
Q Consensus       340 ~v~~~~~~---------------~~~~~~l~~~~~~~l~~  364 (365)
                      +|+++++.               ..+.++|+++++++|+.
T Consensus       511 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  550 (614)
T PRK08180        511 LVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLAR  550 (614)
T ss_pred             EEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHH
Confidence            88876541               12446788888877654

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=6.8e-26  Score=222.41  Aligned_cols=180  Identities=22%  Similarity=0.215  Sum_probs=148.7

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      .+..+.+..+.+. ||+||++.++...........+++|+|+++ .++|+|+++..++  .+..||+ ++|+ ++.||++
T Consensus       294 ~~~~~~g~~v~~~-YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~--~g~~Gel~~~g~-~~~gy~~  368 (511)
T PRK13391        294 QMIDWWGPIIHEY-YAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELP--PGEPGTIWFEGG-RPFEYLN  368 (511)
T ss_pred             HHHHHcCCceeee-eccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCC--CCCceEEEEecC-cceEEcC
Confidence            3344556677777 999999876543222112445789999999 6899997665543  3567888 9999 8999999


Q ss_pred             CCcccccccCCC-CeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        260 LPARVKAPDRKK-CSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       260 ~~~~~~~~~~~~-g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      +++.+.+.+..+ +||+|||+++++++|++++.||.||++|++|.+|+|.+||++|.+||.|.+++|++.+++..|+.++
T Consensus       369 ~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~  448 (511)
T PRK13391        369 DPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVK  448 (511)
T ss_pred             ChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeE
Confidence            999998887654 9999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEEcCCCCC---CHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKL---NADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~---~~~~l~~~~~~~l~~y  365 (365)
                      +++++.++...   ..++++++|+++|++|
T Consensus       449 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  478 (511)
T PRK13391        449 AVVQPVDGVDPGPALAAELIAFCRQRLSRQ  478 (511)
T ss_pred             EEEEECCCCCcccchHHHHHHHHHhhcccC
Confidence            99987664322   2478999999999876

>PRK12467 peptide synthase; Provisional

Probab=99.93  E-value=3.3e-26  Score=265.49  Aligned_cols=179  Identities=15%  Similarity=0.105  Sum_probs=148.4

Q ss_pred             ccCCCCccccccCCcccccccccccccccc---cccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccccc
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFEC---RRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~---~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      ..+++..+++. ||+||++..++.......   ....++|+|+++++++|+|+++++++.  +..||+ ++|+++++||+
T Consensus       793 ~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~--G~~GEL~i~G~~v~~GYl  869 (3956)
T PRK12467        793 ALGPGARLINH-YGPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPV--GVVGELYIGGAGLARGYH  869 (3956)
T ss_pred             HhCCCCEEEeC-cCCChhhhheeeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCC--CCceEEEecccccchhhc
Confidence            34567889999 999999876653221111   123579999999999999987766543  578998 99999999999


Q ss_pred             CCCcccccccCC-------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046        259 GLPARVKAPDRK-------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  331 (365)
Q Consensus       259 ~~~~~~~~~~~~-------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  331 (365)
                      ++|+.|+++|..       ++||+|||+|++++||.++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.++.
T Consensus       870 ~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~  949 (3956)
T PRK12467        870 RRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGD  949 (3956)
T ss_pred             CCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCC
Confidence            999999998843       3499999999999999999999999999999999999999999999999999999996654


Q ss_pred             CCCcEEEEEEEEcCC-----CCCCHHHHHHHHHcccCCC
Q psy13046        332 RMGEEVGISIKLKEN-----AKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       332 ~~g~~~~a~v~~~~~-----~~~~~~~l~~~~~~~l~~y  365 (365)
                       .++.++|++++...     .....++++++|+++||+|
T Consensus       950 -~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~Lp~y  987 (3956)
T PRK12467        950 -AGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDY  987 (3956)
T ss_pred             -CCcEEEEEEEecccccccccccCHHHHHHHHHhhCchh
Confidence             46779999986432     2345689999999999976

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=6.4e-26  Score=225.07  Aligned_cols=179  Identities=25%  Similarity=0.279  Sum_probs=151.6

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      +...++..+.+. ||+||++.+++...........++|+|+|+++++|+|+++.+++.  +..||+ ++|+.++.||+++
T Consensus       345 ~~~~~g~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~--g~~Gel~v~g~~~~~gy~~~  421 (560)
T PRK08974        345 WVKLTGQYLLEG-YGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPP--GEPGELWVKGPQVMLGYWQR  421 (560)
T ss_pred             HHHHhCCcEEee-ecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCC--CCceEEEEecCCcchhhcCC
Confidence            344567788888 999999876654333222345689999999999999977655433  468998 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      ++.+.+.|. +|||+|||+++++++|+++|+||.+|+|+++|.+|+|.+||++|.+||+|.+++|++.+++..++.++++
T Consensus       422 ~~~~~~~~~-~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~  500 (560)
T PRK08974        422 PEATDEVIK-DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIF  500 (560)
T ss_pred             hhhhhhhhh-cCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEE
Confidence            999988884 8999999999999999999999999999999999999999999999999999999999998888888888


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++..+ ...+.++++++++++|++|
T Consensus       501 v~~~~-~~~~~~~l~~~l~~~l~~~  524 (560)
T PRK08974        501 VVKKD-PSLTEEELITHCRRHLTGY  524 (560)
T ss_pred             EECCC-CCCCHHHHHHHHHhhcccc
Confidence            77543 3456789999999998865

>PRK05691 peptide synthase; Validated

Probab=99.93  E-value=4.3e-26  Score=266.49  Aligned_cols=180  Identities=12%  Similarity=0.062  Sum_probs=152.5

Q ss_pred             hccCCCCccccccCCcccccccccccc-cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQ-SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      ...+++..+.+. ||+||++..++... ........++|+|++++.++|+|++++.++  .+..||+ ++|+++++||++
T Consensus      1409 ~~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp--~G~~GEL~i~G~~v~~GYl~ 1485 (4334)
T PRK05691       1409 LQRLPQVQLHNR-YGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLP--PGVAGELCIGGAGLARGYLG 1485 (4334)
T ss_pred             HHhCCCcEEEeC-CCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCC--CCCceEEEecCcccchhhcC
Confidence            345678889999 99999986655321 111234568999999999999998776654  3578998 999999999999


Q ss_pred             CCcccccccCC-------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCC
Q psy13046        260 LPARVKAPDRK-------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  332 (365)
Q Consensus       260 ~~~~~~~~~~~-------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~  332 (365)
                      +|+.|+++|..       .+||+|||++++++||+++|+||+|++||++|+||+|.|||++|.+||+|.+|+|++..+. 
T Consensus      1486 ~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~- 1564 (4334)
T PRK05691       1486 RPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA- 1564 (4334)
T ss_pred             CccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-
Confidence            99999998843       2599999999999999999999999999999999999999999999999999999976554 


Q ss_pred             CCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        333 MGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       333 ~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      .++.++++++...+...+.++++++|+++||.|
T Consensus      1565 ~~~~lva~~~~~~~~~~~~~~l~~~l~~~Lp~y 1597 (4334)
T PRK05691       1565 AGAQLVGYYTGEAGQEAEAERLKAALAAELPEY 1597 (4334)
T ss_pred             CCCEEEEEEEeCCCCCCCHHHHHHHHHHhCccc
Confidence            457899999887766677789999999999987

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.93  E-value=8.8e-26  Score=219.96  Aligned_cols=173  Identities=22%  Similarity=0.260  Sum_probs=147.2

Q ss_pred             CCCccccccCCccccccccc-ccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLE-VVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~-~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      .+..+.+. ||+||++..+. ..........+++|+|+++++++|.|+ +++  .+.+..||+ ++||+++.||+++++.
T Consensus       277 ~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~-~~~--~~~g~~Gel~v~g~~~~~gy~~~~~~  352 (483)
T PRK03640        277 KGIPVYQS-YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD-GVV--VPPFEEGEIVVKGPNVTKGYLNREDA  352 (483)
T ss_pred             hCCCeeee-eccCcccccccccCcccccccCCCcccccCCcEEEEecC-CCc--CCCCCceEEEEECcchhhhhcCCHHH
Confidence            36778888 99999875433 222222245678999999999999885 333  334577898 9999999999999999


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      +...|. +|||+|||++++++||++++.||+||++|++|.+|+|.+||+.+.++++|.++++++.+++..++.++++++.
T Consensus       353 ~~~~~~-~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~  431 (483)
T PRK03640        353 TRETFQ-DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK  431 (483)
T ss_pred             HHHHHh-cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEe
Confidence            988886 8999999999999999999999999999999999999999999999999999999999998888888888885


Q ss_pred             cCCCCCCHHHHHHHHHcccCCC
Q psy13046        344 KENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       344 ~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ..  ..+.++++++|+++|++|
T Consensus       432 ~~--~~~~~~l~~~~~~~l~~~  451 (483)
T PRK03640        432 SG--EVTEEELRHFCEEKLAKY  451 (483)
T ss_pred             CC--CCCHHHHHHHHHHhccCC
Confidence            43  567889999999999876

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.93  E-value=1.5e-25  Score=221.57  Aligned_cols=180  Identities=17%  Similarity=0.131  Sum_probs=150.4

Q ss_pred             hhccCCCCccccccCCcccccccccccccc---c-------ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-ee
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSF---E-------CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SS  249 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~-------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~  249 (365)
                      .+.. .+..+++. ||+||++.+.+.....   .       .....++|+|.++++++|+|+++..++.+.+..||+ ++
T Consensus       313 ~~~~-~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~  390 (542)
T PRK06018        313 AFED-MGVEVRHA-WGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVR  390 (542)
T ss_pred             HHHH-hCCCeEee-ecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEe
Confidence            3344 67888888 9999998665422110   0       012357899999999999998877776554567898 99


Q ss_pred             cCcccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeec
Q psy13046        250 QTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP  329 (365)
Q Consensus       250 g~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~  329 (365)
                      |++++.|||++   +...++.+|||+|||+++++++|++++.||.+|+||++|.+|+|.|||+++.+||.|.+++|++.+
T Consensus       391 g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~  467 (542)
T PRK06018        391 GPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVY  467 (542)
T ss_pred             cCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEecc
Confidence            99999999984   233455689999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        330 DERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       330 ~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++..++.+.++|++.++...+.++++++++++|++|
T Consensus       468 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  503 (542)
T PRK06018        468 HPKWDERPLLIVQLKPGETATREEILKYMDGKIAKW  503 (542)
T ss_pred             CCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccc
Confidence            998888999999988877778889999999999875

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.6e-25  Score=220.58  Aligned_cols=180  Identities=21%  Similarity=0.205  Sum_probs=150.3

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceee--EeecCeeEEEEEcccceeccCCceeeEEeecCcccccccC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVL--HIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRG  259 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~i~d~~~~~~~~~~~~~gei~~g~~~~~gY~~  259 (365)
                      ...+++..+.+. ||+||++.........   .....|  ++.++..++|+|+++.++..+....|++++++.++.||++
T Consensus       317 ~~~~~~~~~~~~-YG~tE~~~~~~~~~~~---~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~~~gy~~  392 (533)
T PRK07798        317 LELLPNVVLTDS-IGSSETGFGGSGTVAK---GAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYK  392 (533)
T ss_pred             HHHcCCCeEEee-ecccccccccccCCCC---CCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEeecCccccccC
Confidence            334668888888 9999996554422111   111223  7888999999998888665554444888888899999999


Q ss_pred             CCcccccccCC---CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcE
Q psy13046        260 LPARVKAPDRK---KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  336 (365)
Q Consensus       260 ~~~~~~~~~~~---~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  336 (365)
                      +++.+++.|..   ++||+|||++++|++|++++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.++...++.
T Consensus       393 ~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~  472 (533)
T PRK07798        393 DPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQE  472 (533)
T ss_pred             ChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCce
Confidence            99999888742   469999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             EEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        337 VGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       337 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +.++++++++...+.++++++++++|++|
T Consensus       473 ~~~~v~~~~~~~~~~~~l~~~l~~~l~~~  501 (533)
T PRK07798        473 VVAVVQLREGARPDLAELRAHCRSSLAGY  501 (533)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHhhhcccC
Confidence            99999988776678899999999999876

>PLN02479 acetate-CoA ligase

Probab=99.93  E-value=1.3e-25  Score=223.23  Aligned_cols=177  Identities=28%  Similarity=0.281  Sum_probs=143.2

Q ss_pred             CCccccccCCcccccccccccc---c-------ccccccceeeEeecCee-EEEEEcc-cceeccCCceeeEE-eecCcc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQ---S-------FECRRYQVVLHIFEHLF-LELVLYI-VNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~---~-------~~~~~~~~~G~~~~~~~-~~i~d~~-~~~~~~~~~~~gei-~~g~~~  253 (365)
                      +..+.+. ||+||++..++...   .       .......+.|.+.+++. ++|+|++ +.+++.+.+..||+ ++|+++
T Consensus       334 ~~~~~~~-yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~  412 (567)
T PLN02479        334 GFRVTHT-YGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMV  412 (567)
T ss_pred             CCceecc-cccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccch
Confidence            5677888 99999854332110   0       00011245688888875 8899854 44443333457998 999999


Q ss_pred             cccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCC
Q psy13046        254 MKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  333 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  333 (365)
                      +.|||++|+.|.+.|. +|||+|||++++|++|+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++.+++..
T Consensus       413 ~~GY~~~~~~t~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~  491 (567)
T PLN02479        413 MKGYLKNPKANEEAFA-NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERW  491 (567)
T ss_pred             hhhhhcCcccccchhc-CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhc
Confidence            9999999999999997 899999999999999999999999999999999999999999999999999999999998878


Q ss_pred             CcEEEEEEEEcCCCC-----CCHHHHHHHHHcccCCC
Q psy13046        334 GEEVGISIKLKENAK-----LNADDIRTFCKGKVSKF  365 (365)
Q Consensus       334 g~~~~a~v~~~~~~~-----~~~~~l~~~~~~~l~~y  365 (365)
                      ++.++++++++++..     ...++|+++++++|++|
T Consensus       492 ~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  528 (567)
T PLN02479        492 GESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAY  528 (567)
T ss_pred             CceeEEEEEecCcccccchhhhHHHHHHHHHhhcccc
Confidence            889999999876532     33468999999999876

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.7e-25  Score=219.87  Aligned_cols=177  Identities=22%  Similarity=0.215  Sum_probs=144.9

Q ss_pred             CCccccccCCcccccccccccccc------c----ccccceeeEeec-CeeEEEEEcccceec-cCCceeeEE-eecCcc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSF------E----CRRYQVVLHIFE-HLFLELVLYIVNSVL-YNFKWINQV-SSQTMA  253 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~------~----~~~~~~~G~~~~-~~~~~i~d~~~~~~~-~~~~~~gei-~~g~~~  253 (365)
                      +..+.+. ||+||++..+......      .    .....++|.+++ +..++|+|++++... ......||+ ++|+++
T Consensus       320 ~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~  398 (545)
T PRK08162        320 GFDLTHV-YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIV  398 (545)
T ss_pred             CCceeec-ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcc
Confidence            6778888 9999985433321110      0    011245677666 446888886544433 333356998 999999


Q ss_pred             cccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCC
Q psy13046        254 MKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM  333 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  333 (365)
                      +.||+++++.+...|. +|||+|||++++|+||+++|+||.||++|++|.+|+|.+||+.|.+||+|.+++|++.+++..
T Consensus       399 ~~gY~~~~~~~~~~~~-~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~  477 (545)
T PRK08162        399 MKGYLKNPKATEEAFA-GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKW  477 (545)
T ss_pred             hhhhcCChhhhHHHhh-CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeecccc
Confidence            9999999999998886 899999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        334 GEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       334 g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++.++++++++++...+.++++++++++|++|
T Consensus       478 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~  509 (545)
T PRK08162        478 GEVPCAFVELKDGASATEEEIIAHCREHLAGF  509 (545)
T ss_pred             CceEEEEEEeCCCCCCCHHHHHHHHHHhcccc
Confidence            89999999988776677889999999999876

>PRK05691 peptide synthase; Validated

Probab=99.93  E-value=2.2e-25  Score=260.57  Aligned_cols=180  Identities=16%  Similarity=0.062  Sum_probs=148.2

Q ss_pred             hccCCCCccccccCCcccccccccccccc---cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSF---ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      ....++..+.+. ||+|||+..++.....   ......++|+|++++++.|+|..++.++.  +..||+ ++|+++++||
T Consensus      4004 ~~~~~~~~l~n~-YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~--g~~GEL~i~G~~v~~GY 4080 (4334)
T PRK05691       4004 LQRYPQIGLVNA-YGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPL--GAVGELCVAGTGVGRGY 4080 (4334)
T ss_pred             HHhCCCCeEEeC-ccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCC--CCceEEEEecccccccc
Confidence            345688889999 9999998766532211   11233579999999999999976665544  578998 9999999999


Q ss_pred             cCCCcccccccC-------CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecC
Q psy13046        258 RGLPARVKAPDR-------KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD  330 (365)
Q Consensus       258 ~~~~~~~~~~~~-------~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  330 (365)
                      +++|+.|+++|.       .++||||||++++++||+++|+||+|++||++|+||++.|||++|.++|+|.+|+|+....
T Consensus      4081 ~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~ 4160 (4334)
T PRK05691       4081 VGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEG 4160 (4334)
T ss_pred             cCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecC
Confidence            999999999994       2469999999999999999999999999999999999999999999999999998876543


Q ss_pred             CCCCcEEEEEEEEcCCCCC---CHHHHHHHHHcccCCC
Q psy13046        331 ERMGEEVGISIKLKENAKL---NADDIRTFCKGKVSKF  365 (365)
Q Consensus       331 ~~~g~~~~a~v~~~~~~~~---~~~~l~~~~~~~l~~y  365 (365)
                       ..++.++|+++.......   ..++++++|+++||+|
T Consensus      4161 -~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y 4197 (4334)
T PRK05691       4161 -VNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDY 4197 (4334)
T ss_pred             -CCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChh
Confidence             456789999987654322   2367999999999987

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2.8e-25  Score=232.48  Aligned_cols=174  Identities=13%  Similarity=0.037  Sum_probs=136.0

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCe-eEEEE-----------EcccceeccCCceeeEE-
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHL-FLELV-----------LYIVNSVLYNFKWINQV-  247 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~-----------d~~~~~~~~~~~~~gei-  247 (365)
                      +...+++..+.+. ||+||++.+....   .....+++|+|+|++ +++|.           |+++.....+.++.||+ 
T Consensus       738 ~~~~~~~~~l~~~-YG~TE~~~~~~~~---~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~  813 (994)
T PRK07868        738 VVEAFAPAHVVEF-FATTDGQAVLANV---SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLL  813 (994)
T ss_pred             HHHHhCchheeee-eeccccccccccc---CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEE
Confidence            4445666778888 9999987654321   113457899999997 67664           22331122344678898 


Q ss_pred             eecCcccccccCCCccc--ccccC-CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEE
Q psy13046        248 SSQTMAMKSKRGLPARV--KAPDR-KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY  324 (365)
Q Consensus       248 ~~g~~~~~gY~~~~~~~--~~~~~-~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~  324 (365)
                      +++++    |+ +|+.+  +..|. .+|||+|||+|++|+||+|+|+||+||+||++|.+|+|.|||++|.+||.|.+|+
T Consensus       814 ~~~~~----~~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aa  888 (994)
T PRK07868        814 ARARG----PI-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAV  888 (994)
T ss_pred             EecCC----CC-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEE
Confidence            88875    33 45443  22353 4899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        325 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       325 v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |++.+++. ++.++|+|+++++...+.++|+++|++ |++|
T Consensus       889 Vvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y  927 (994)
T PRK07868        889 TYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS-LPVG  927 (994)
T ss_pred             EEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCC
Confidence            99999875 678999999988777888999999985 8876

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.93  E-value=3.3e-25  Score=217.37  Aligned_cols=177  Identities=20%  Similarity=0.138  Sum_probs=149.0

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPA  262 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~  262 (365)
                      ...+.++++. ||+||++++....... ....+++|+|+++++++|+|+++.+++.  +..||+ ++|++++.||+++++
T Consensus       300 ~~~~~~v~~~-YG~tE~~~~~~~~~~~-~~~~~~~G~~~~g~~v~i~d~~~~~~~~--g~~Gel~i~~~~~~~gY~~~~~  375 (508)
T TIGR02262       300 ARFGVDIVDG-IGSTEMLHIFLSNLPG-DVRYGTSGKPVPGYRLRLVGDGGQDVAA--GEPGELLISGPSSATMYWNNRA  375 (508)
T ss_pred             HHhCCchhhC-ccccccCceeecCCcc-CCCCCCcCCCCCCcEEEEECCCCCCCCC--CCeeEEEEecCccccccCCCHH
Confidence            3346778888 9999998765432221 1345689999999999999966554433  567898 999999999999999


Q ss_pred             ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046        263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  342 (365)
Q Consensus       263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~  342 (365)
                      .++..|. ++||+|||+++++++|++++.||.||+||++|.+|+|.+||++|.++++|.++++++.++...++.+.++++
T Consensus       376 ~~~~~~~-~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~  454 (508)
T TIGR02262       376 KTRDTFQ-GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIV  454 (508)
T ss_pred             HhHhhhh-cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEE
Confidence            9988886 899999999999999999999999999999999999999999999999999999999988777788899998


Q ss_pred             EcCCCC---CCHHHHHHHHHcccCCC
Q psy13046        343 LKENAK---LNADDIRTFCKGKVSKF  365 (365)
Q Consensus       343 ~~~~~~---~~~~~l~~~~~~~l~~y  365 (365)
                      +.++..   ...++++++++++|++|
T Consensus       455 ~~~~~~~~~~~~~~i~~~~~~~l~~~  480 (508)
T TIGR02262       455 LRPGQDIDTALETELKEHVKDRLAPY  480 (508)
T ss_pred             eCCCCccccccHHHHHHHHHHhcccC
Confidence            876542   34678999999998865

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.93  E-value=6.9e-25  Score=222.60  Aligned_cols=177  Identities=18%  Similarity=0.147  Sum_probs=133.2

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecC--cccccccCCCc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQT--MAMKSKRGLPA  262 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~--~~~~gY~~~~~  262 (365)
                      +...+.+. ||+||++..+...........+++|.|++|++++|+|+++++++.+....||+ ++++  +...+|+++. 
T Consensus       496 ~~~~i~~~-yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-  573 (728)
T PLN03052        496 GYKPIIEY-CGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-  573 (728)
T ss_pred             CCCCeEee-ccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCch-
Confidence            33456777 99999975433221111234578899999999999998888776543346898 6543  2345677654 


Q ss_pred             ccccccC------CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHH-cCCCeeEEEEEeecCCCCC-
Q psy13046        263 RVKAPDR------KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAYAYGVPDERMG-  334 (365)
Q Consensus       263 ~~~~~~~------~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-  334 (365)
                      .+...|.      .+.||+|||++++|+||+++|+||.||+||++|+||+|.|||++|. .||.|.+++|++.+++..| 
T Consensus       574 ~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~  653 (728)
T PLN03052        574 HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGP  653 (728)
T ss_pred             hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCc
Confidence            3333342      2239999999999999999999999999999999999999999995 7999999999999998776 


Q ss_pred             cEEEEEEEEc--CCCCCCHHHHHHH----HHcccCC
Q psy13046        335 EEVGISIKLK--ENAKLNADDIRTF----CKGKVSK  364 (365)
Q Consensus       335 ~~~~a~v~~~--~~~~~~~~~l~~~----~~~~l~~  364 (365)
                      +.+++||+++  ++...+.++|+++    ++++|++
T Consensus       654 e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~  689 (728)
T PLN03052        654 EQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNP  689 (728)
T ss_pred             EEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence            8899999987  5555565666665    4555554

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.92  E-value=4.7e-25  Score=219.67  Aligned_cols=142  Identities=18%  Similarity=0.168  Sum_probs=123.7

Q ss_pred             ceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeec
Q psy13046        216 QVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRI  294 (365)
Q Consensus       216 ~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~  294 (365)
                      .++|+|+|+++++|+|+++..+.  .+..||+ ++|++++.|||++ +.+.+.+..++||+|||+|++ ++|+++|+||+
T Consensus       385 ~~vG~~~p~~~v~i~d~~~~~~~--~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~  460 (579)
T PRK09192        385 VNCGKALPGHEIEIRNEAGMPLP--ERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRA  460 (579)
T ss_pred             eecCCcCCCcEEEEECCCCCCCC--CCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEecc
Confidence            57899999999999997765544  3578998 9999999999999 667777777999999999999 99999999999


Q ss_pred             CceEEeCceEeChHHHHHHHHcCCCee--EEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHccc
Q psy13046        295 KDMIIRGGENIYPKEIEEFIQTHPNVL--EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV  362 (365)
Q Consensus       295 ~d~i~~~G~~v~~~eiE~~l~~~~~v~--~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l  362 (365)
                      ||+||++|++|+|.|||++|.+||+|.  +++|++.+++. ++.++++++..++...+.++|++++++.+
T Consensus       461 dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l  529 (579)
T PRK09192        461 KDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALV  529 (579)
T ss_pred             ccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999998  89999999885 56888888876655556678888887765

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.92  E-value=1.1e-24  Score=213.11  Aligned_cols=182  Identities=14%  Similarity=0.020  Sum_probs=146.4

Q ss_pred             chhccCCCCccccccCCcccccccccccccc----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046        180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM  254 (365)
Q Consensus       180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~  254 (365)
                      .+...+++..+.+. ||+||++...+.....    ......++|+++++++++|+|.++..++.  +..||+ ++|++++
T Consensus       279 ~~~~~~~~~~~~~~-yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~--g~~Gel~v~~~~~~  355 (503)
T PRK04813        279 KLLERFPSATIYNT-YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPD--GEQGEIVISGPSVS  355 (503)
T ss_pred             HHHHHCCCceEEeC-cccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCC--CCceEEEEeccccc
Confidence            34456678888888 9999986544321111    11345579999999999999977665543  467888 9999999


Q ss_pred             ccccCCCcccccccCC-C--CeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046        255 KSKRGLPARVKAPDRK-K--CSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  331 (365)
Q Consensus       255 ~gY~~~~~~~~~~~~~-~--g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  331 (365)
                      .||+++++.+...|.. +  +||+|||++++ ++|++++.||.||+||++|.+|+|.+||+++.++|+|.+++|++.++.
T Consensus       356 ~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  434 (503)
T PRK04813        356 KGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKD  434 (503)
T ss_pred             cccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCC
Confidence            9999999999887732 3  59999999999 899999999999999999999999999999999999999999998887


Q ss_pred             CCCcEEEEEEEEcCCCCC----CHHHHHHHHHcccCCC
Q psy13046        332 RMGEEVGISIKLKENAKL----NADDIRTFCKGKVSKF  365 (365)
Q Consensus       332 ~~g~~~~a~v~~~~~~~~----~~~~l~~~~~~~l~~y  365 (365)
                      ..++.++++++++++...    ..++++++++++|++|
T Consensus       435 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~  472 (503)
T PRK04813        435 HKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEY  472 (503)
T ss_pred             CCccEEEEEEEeccccccccchhHHHHHHHHHhhCccc
Confidence            778889999987763211    1246889998888764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.92  E-value=1.5e-24  Score=231.76  Aligned_cols=171  Identities=14%  Similarity=0.067  Sum_probs=139.0

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPA  262 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~  262 (365)
                      +..+..+.+. ||+||+++.+...... ....+++|+|+|++++++.+.++      .++.||+ ++|++++.||+++++
T Consensus       929 ~~~~~~~~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~p~~g~~~~~~~~~~------~~~~Gel~v~g~~~~~gY~~~~~ 1000 (1140)
T PRK06814        929 EKFGIRILEG-YGVTETAPVIALNTPM-HNKAGTVGRLLPGIEYRLEPVPG------IDEGGRLFVRGPNVMLGYLRAEN 1000 (1140)
T ss_pred             HHhCCcEEec-cccccccceEEecCCC-CCCCCcCCccCCCCeEEEeecCC------CCCceEEEEeCCCcchhhcCCCC
Confidence            3446778888 9999998766533222 24567899999999999876432      2356888 999999999999875


Q ss_pred             ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046        263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  342 (365)
Q Consensus       263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~  342 (365)
                      .+......+|||+|||++++|+||++++.||.||+||++|++|+|.|||++|.+|+.+.+++|++.+++..|+.+++++.
T Consensus      1001 ~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~ 1080 (1140)
T PRK06814       1001 PGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT 1080 (1140)
T ss_pred             CCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc
Confidence            43222224899999999999999999999999999999999999999999999999999999999999988888877654


Q ss_pred             EcCCCCCCHHHHHHHHHcc-cCCC
Q psy13046        343 LKENAKLNADDIRTFCKGK-VSKF  365 (365)
Q Consensus       343 ~~~~~~~~~~~l~~~~~~~-l~~y  365 (365)
                         +.+.+.++++++++++ +++|
T Consensus      1081 ---~~~~~~~~l~~~~~~~~l~~~ 1101 (1140)
T PRK06814       1081 ---ASDATRAAFLAHAKAAGASEL 1101 (1140)
T ss_pred             ---CCCcCHHHHHHHHHHcCCCcc
Confidence               2346778999999874 7764

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.92  E-value=2.3e-25  Score=223.75  Aligned_cols=136  Identities=12%  Similarity=0.034  Sum_probs=114.0

Q ss_pred             CccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccccc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKA  266 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~  266 (365)
                      ..+.+. ||+||+++++..... .....+++|+|+||++++|++.         +..||+ ++|+++|.|||++|+.|++
T Consensus       378 ~~l~~~-YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~~~---------G~~GEl~vrg~~v~~GY~~~p~~t~~  446 (624)
T PRK12582        378 IPFYTG-YGATETAPTTTGTHW-DTERVGLIGLPLPGVELKLAPV---------GDKYEVRVKGPNVTPGYHKDPELTAA  446 (624)
T ss_pred             ceEEec-cccccccceeecccC-CCCCCCCCCcCCCCcEEEEccC---------CCceEEEEECCcccccccCCccchhh
Confidence            456777 999999876552221 1245678999999999998642         457888 9999999999999999999


Q ss_pred             ccCCCCeeecCceEEE-c---cCCcEEEEeecCceEE-eCceEeChHHHH--HHHHcCCCeeEEEEEeecCCCCC
Q psy13046        267 PDRKKCSQRPRYQFVL-R---EDGYGQVVGRIKDMII-RGGENIYPKEIE--EFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       267 ~~~~~g~~~TGD~~~~-~---~~G~l~i~GR~~d~i~-~~G~~v~~~eiE--~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      .|+.+|||+|||+|++ |   ++|+++|+||+||+|| .+|++|+|.+||  .++.+||.|.+|+|++.+++..|
T Consensus       447 ~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g  521 (624)
T PRK12582        447 AFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIG  521 (624)
T ss_pred             hcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEE
Confidence            9987999999999998 4   4699999999999999 579999999885  67789999999999999877544

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.92  E-value=2.7e-24  Score=206.76  Aligned_cols=169  Identities=20%  Similarity=0.206  Sum_probs=139.4

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      .+..+.+. ||+||++..+............++|+|+++++++|.+++.       ...||+ ++|+.++.||+++++.+
T Consensus       242 ~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~-------~~~Gel~v~~~~~~~gy~~~~~~~  313 (436)
T TIGR01923       242 YGLPIYLS-YGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK-------EGHGEIMVKGANLMKGYLYQGELT  313 (436)
T ss_pred             hCCceeeE-ecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC-------CCceEEEEECCccchhhCCChhhh
Confidence            37778888 9999997655422221111112489999999999844322       156887 99999999999988877


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      ...+. ++||+|||++++++||++++.||.||+||++|.+|+|.+||++|.+++.|.++++++.++...++.+.++++++
T Consensus       314 ~~~~~-~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  392 (436)
T TIGR01923       314 PAFEQ-QGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSE  392 (436)
T ss_pred             hhhhc-CCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEEC
Confidence            66554 89999999999999999999999999999999999999999999999999999999998887788899999887


Q ss_pred             CCCCCCHHHHHHHHHcccCCC
Q psy13046        345 ENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       345 ~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +  ..+.+++.+++++.|++|
T Consensus       393 ~--~~~~~~l~~~l~~~l~~~  411 (436)
T TIGR01923       393 S--DISQAKLIAYLTEKLAKY  411 (436)
T ss_pred             C--CCCHHHHHHHHHHhhhCC
Confidence            5  367789999999988865

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.92  E-value=1.5e-24  Score=217.02  Aligned_cols=178  Identities=13%  Similarity=0.034  Sum_probs=134.7

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeec----CeeEE---------EEEcccceeccCCceeeEE-
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFE----HLFLE---------LVLYIVNSVLYNFKWINQV-  247 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~----~~~~~---------i~d~~~~~~~~~~~~~gei-  247 (365)
                      ...++...+++. ||+||++..+...    .....++|++.+    +..+.         |.+.++.......+..||+ 
T Consensus       333 ~~~~~~~~l~~~-YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~  407 (600)
T PRK08279        333 QQRFGIPRILEF-YAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLI  407 (600)
T ss_pred             HHHhCcceeeee-ecccccceeeccc----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEE
Confidence            344555567888 9999987543321    123456676555    33332         2333332223344567886 


Q ss_pred             --eecCcccccccCCCcccccccC------CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCC
Q psy13046        248 --SSQTMAMKSKRGLPARVKAPDR------KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN  319 (365)
Q Consensus       248 --~~g~~~~~gY~~~~~~~~~~~~------~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~  319 (365)
                        ++|++++.|| ++++.|.+.|.      .++||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||+
T Consensus       408 ~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~  486 (600)
T PRK08279        408 GRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPG  486 (600)
T ss_pred             EEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCC
Confidence              6799999999 88888876652      36899999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeecCCCC-CcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        320 VLEAYAYGVPDERM-GEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       320 v~~~~v~~~~~~~~-g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |.+|+|++++++.. +....++++..++...+.++++++|+++|++|
T Consensus       487 V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~  533 (600)
T PRK08279        487 VEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAY  533 (600)
T ss_pred             cceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccc
Confidence            99999999987653 45566777766555678899999999999987

>KOG1180|consensus

Probab=99.91  E-value=5.5e-25  Score=203.13  Aligned_cols=162  Identities=13%  Similarity=0.017  Sum_probs=137.2

Q ss_pred             cchhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecCccccc
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQTMAMKS  256 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~~~~~g  256 (365)
                      .++.+..-..++.+. ||+||++...+.... .+...+.+|.|+|.++++++|- |++--..+..+.||| ++|+++..|
T Consensus       419 QrF~nic~C~Pv~qG-YGLTEtca~~tv~e~-~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~g  496 (678)
T KOG1180|consen  419 QRFMNICFCCPVLQG-YGLTETCAAATVLEP-EDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMG  496 (678)
T ss_pred             HHHHHHhcccccccc-ccccchhcccEecCh-hhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChh
Confidence            344455556667777 999999876664332 3356679999999999999995 455444444478998 999999999


Q ss_pred             ccCCCcccccccCC-CC--eeecCceEEEccCCcEEEEeecCceEE-eCceEeChHHHHHHHHcCCCeeEEEEEeecCCC
Q psy13046        257 KRGLPARVKAPDRK-KC--SQRPRYQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDER  332 (365)
Q Consensus       257 Y~~~~~~~~~~~~~-~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~-~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~  332 (365)
                      |++||+.|++.|+. +|  ||+|||+|++.+||.|.|.+|++|++| -+|+.|+++.||+++.+.|.|...||++.....
T Consensus       497 Y~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s  576 (678)
T KOG1180|consen  497 YYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKS  576 (678)
T ss_pred             hhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccc
Confidence            99999999999977 88  999999999999999999999999999 799999999999999999999999999987764


Q ss_pred             CCcEEEEEEEEcC
Q psy13046        333 MGEEVGISIKLKE  345 (365)
Q Consensus       333 ~g~~~~a~v~~~~  345 (365)
                         .++++||+++
T Consensus       577 ---~~VaiVVPn~  586 (678)
T KOG1180|consen  577 ---KPVAIVVPNQ  586 (678)
T ss_pred             ---eeEEEEcCCc
Confidence               5999999875

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.91  E-value=3.9e-24  Score=213.11  Aligned_cols=121  Identities=22%  Similarity=0.188  Sum_probs=104.4

Q ss_pred             CeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccccccC-----------CCCeeecCceEEEccCCcEEEE
Q psy13046        224 HLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKAPDR-----------KKCSQRPRYQFVLREDGYGQVV  291 (365)
Q Consensus       224 ~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~-----------~~g~~~TGD~~~~~~~G~l~i~  291 (365)
                      +.+++|+|+++.... +.+..||+ ++|++++.|||++|+.|++.|.           .++||+|||+|+++ ||+++|+
T Consensus       378 ~~~~~ivd~~~~~~~-~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~  455 (578)
T PRK05850        378 SPTVRIVDPDTCIEC-PAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIV  455 (578)
T ss_pred             CCEEEEEcCCCCcCC-CCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEE
Confidence            578999997644333 34678998 9999999999999999998884           25799999999998 9999999


Q ss_pred             eecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCC
Q psy13046        292 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK  348 (365)
Q Consensus       292 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~  348 (365)
                      ||+||+||++|++|+|.|||++|.+||.+ +++|++++++ .++.++|+|+++++..
T Consensus       456 GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~  510 (578)
T PRK05850        456 GRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGD  510 (578)
T ss_pred             cccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccC
Confidence            99999999999999999999999999985 4788888887 6788999999886543

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.88  E-value=2.5e-22  Score=198.73  Aligned_cols=169  Identities=17%  Similarity=0.133  Sum_probs=124.8

Q ss_pred             ccccccCCcccccccccccccc-------------------------cccccceeeEeecCeeEEEEEcccceeccCCce
Q psy13046        189 SYFPCCCGKLRIHPFLEVVQSF-------------------------ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKW  243 (365)
Q Consensus       189 ~~~~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~  243 (365)
                      .+.+. ||+||++..++.....                         ......++|+|+|+++++|+|+++..+.  .+.
T Consensus       309 ~~~~~-yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~--~g~  385 (545)
T PRK07768        309 AILPA-YGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLP--PRG  385 (545)
T ss_pred             ccccc-ccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCC--CCC
Confidence            46777 9999997644321110                         0123468999999999999997766553  346


Q ss_pred             eeEE-eecCcccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeE
Q psy13046        244 INQV-SSQTMAMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE  322 (365)
Q Consensus       244 ~gei-~~g~~~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~  322 (365)
                      .||+ ++|+.++.||++++.... .+..+|||+|||++++|++|+++++||.||+||++|.+|+|.|||++|.+||+|.+
T Consensus       386 ~Gel~v~~~~~~~gy~~~~~~~~-~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~  464 (545)
T PRK07768        386 VGVIELRGESVTPGYLTMDGFIP-AQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRP  464 (545)
T ss_pred             EEEEEEccCcccccccCCCCCcc-cccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCccccc
Confidence            7898 999999999998665443 33448999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeec--CCCCCcEEEEEEEEcCCCC-CCHHHHHHHHHcc
Q psy13046        323 AYAYGVP--DERMGEEVGISIKLKENAK-LNADDIRTFCKGK  361 (365)
Q Consensus       323 ~~v~~~~--~~~~g~~~~a~v~~~~~~~-~~~~~l~~~~~~~  361 (365)
                      ++|++.+  +...++..++++....+.. ....++.+++++.
T Consensus       465 ~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~  506 (545)
T PRK07768        465 GNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHE  506 (545)
T ss_pred             ceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHH
Confidence            8877654  3434555555554443211 1123455555544

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.88  E-value=1.4e-22  Score=193.05  Aligned_cols=140  Identities=16%  Similarity=0.061  Sum_probs=115.9

Q ss_pred             ccCCCCccccccCCcccccccccccccccc--c--ccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFEC--R--RYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~--~--~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      ..+++..+.+. ||+||+++++........  .  ...++|+|+|+++++|+|+++..+.  .+..||+ ++|++++.||
T Consensus       256 ~~~~~~~i~~~-YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~--~g~~Gel~v~~~~~~~gy  332 (408)
T TIGR01733       256 ARGPGARLINL-YGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVP--VGVVGELYIGGPGVARGY  332 (408)
T ss_pred             HhCCCcEEEec-ccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCCCCCCC--CCCceEEEecCccccccc
Confidence            44555788888 999999876642111111  1  1678999999999999998754443  3467888 9999999999


Q ss_pred             cCCCcccccccCCC------C--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEE
Q psy13046        258 RGLPARVKAPDRKK------C--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA  325 (365)
Q Consensus       258 ~~~~~~~~~~~~~~------g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v  325 (365)
                      +++++.+.+.|..+      |  ||+|||++++|++|+++|.||.||+|+++|++|+|.+||++|.+|+.|.+|+|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       333 LNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             cCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            99999998877432      3  99999999999999999999999999999999999999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.88  E-value=1.3e-21  Score=187.09  Aligned_cols=146  Identities=18%  Similarity=0.190  Sum_probs=121.1

Q ss_pred             CCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVK  265 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~  265 (365)
                      +..+.+. ||+||++.+.... .  .....++|+|+|++++++.+.+        +..||+ +++               
T Consensus       236 ~~~~~~~-YG~tE~~~~~~~~-~--~~~~~~~G~p~~~~~~~~~~~~--------~~~gel~v~~---------------  288 (414)
T PRK08308        236 TTYMMQQ-YGCSEAGCVSICP-D--MKSHLDLGNPLPHVSVSAGSDE--------NAPEEIVVKM---------------  288 (414)
T ss_pred             CChhhhc-cCccccCCeeecC-C--CCCCCccCccCCCeEEEEecCC--------CCCceEEEEc---------------
Confidence            4567788 9999997544321 1  1345678999999999986531        234666 432               


Q ss_pred             cccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcC
Q psy13046        266 APDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  345 (365)
Q Consensus       266 ~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  345 (365)
                          .++||+|||++++|+||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+.++++...
T Consensus       289 ----~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~  364 (414)
T PRK08308        289 ----GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE  364 (414)
T ss_pred             ----CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC
Confidence                2689999999999999999999999999999999999999999999999999999999999988999999988764


Q ss_pred             CCCCCHHHHHHHHHcccCCC
Q psy13046        346 NAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       346 ~~~~~~~~l~~~~~~~l~~y  365 (365)
                        ..+.++++++++++|++|
T Consensus       365 --~~~~~~l~~~l~~~l~~~  382 (414)
T PRK08308        365 --EIDPVQLREWCIQHLAPY  382 (414)
T ss_pred             --CCCHHHHHHHHHHhCccc
Confidence              467889999999999876

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.86  E-value=3.2e-21  Score=190.02  Aligned_cols=138  Identities=34%  Similarity=0.435  Sum_probs=124.9

Q ss_pred             CCCceEEEEecCchhhhhhcc------ccc-ccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCc
Q psy13046         16 RQKKAIHFRHFDSFLLFVELC------LLL-FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~------~~~-~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      ++.|||+++|+.+|.+|++..      |.. +||+|||++++|+||+++|+||.||+|+++|+||+|.+||.++.+||.|
T Consensus       370 g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V  449 (534)
T COG0318         370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAV  449 (534)
T ss_pred             CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCc
Confidence            668999999999999999873      444 9999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcCC--CCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKEN--AKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~~--~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+++|+|+|++.+++.++++++++++  ...+.+++.+++++.+..+..++.+.     +.+.+|++.+||+
T Consensus       450 ~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~-----~v~~lP~t~sGKi  516 (534)
T COG0318         450 AEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVV-----FVDELPRTASGKI  516 (534)
T ss_pred             ceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEE-----EeCCCCCCCchhh
Confidence            99999999999999999999999876  34478899999999888777775444     6689999999998

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.86  E-value=4.6e-21  Score=183.84  Aligned_cols=150  Identities=26%  Similarity=0.202  Sum_probs=130.0

Q ss_pred             eeeeceeeccCCCCCCceEEEEec--Cchhhhhhc-------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEe
Q psy13046          3 QIWVLAIANQHSSRQKKAIHFRHF--DSFLLFVEL-------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENI   73 (365)
Q Consensus         3 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~y~~~-------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v   73 (365)
                      +|++.. .++.+.++ |+|.++.+  ..+++|++.       |++. ||+|||.+++|+||+++|.||.||+||+.|.+|
T Consensus       353 ~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Ri  429 (528)
T COG0365         353 RRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRI  429 (528)
T ss_pred             EEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeec
Confidence            455555 67777778 99999987  778888876       3444 999999999999999999999999999999999


Q ss_pred             chHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccc
Q psy13046         74 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKY  153 (365)
Q Consensus        74 ~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~  153 (365)
                      .|.|||++|.+||.|.+++|+|+|++..++.+.++|+++++.+.+  +|.+.+++.+.+...+...+ ..+.+.+.||++
T Consensus       430 g~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~--~L~~ei~~~vr~~~~~~~~p-~~i~fv~~LPkT  506 (528)
T COG0365         430 GPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN--ELAEEIRRHVARNIGPHAIP-RKIRFVDELPKT  506 (528)
T ss_pred             cHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH--HHHHHHHHHHHhccCcccCC-ceEEEecCCCCC
Confidence            999999999999999999999999999999999999999986554  77777777776666664444 888899999999


Q ss_pred             cCcee
Q psy13046        154 RSAST  158 (365)
Q Consensus       154 ~~gk~  158 (365)
                      .+||+
T Consensus       507 ~sGKI  511 (528)
T COG0365         507 ASGKI  511 (528)
T ss_pred             CcccH
Confidence            99999

>KOG1177|consensus

Probab=99.85  E-value=6.2e-21  Score=173.81  Aligned_cols=146  Identities=33%  Similarity=0.490  Sum_probs=126.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc-------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC-------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~-------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ..++.+..|++++||+..|++|+...       -..-||+|||++.+|++|++.|+||.+|||+.+|+||||.|+|++|.
T Consensus       425 ~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~  504 (596)
T KOG1177|consen  425 SEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN  504 (596)
T ss_pred             CccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh
Confidence            34455678999999999999999852       24679999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC--CCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCceeEEE
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAK--LNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTVWY  161 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~--~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~~~~  161 (365)
                      +||.|.++.|+|+|++..++.++|+|.++.+.+  ...++|..+++..+....-++..+     +.+.+|++.+||+.+|
T Consensus       505 ~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~v-----f~~~FPlT~tGKIqKF  579 (596)
T KOG1177|consen  505 KHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFV-----FVDEFPLTTTGKIQKF  579 (596)
T ss_pred             hCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEE-----EeccCcccccccchhH
Confidence            999999999999999999999999999987654  477899999998877666664433     5566999999998443

>KOG1175|consensus

Probab=99.84  E-value=2.4e-20  Score=179.77  Aligned_cols=155  Identities=24%  Similarity=0.194  Sum_probs=136.0

Q ss_pred             CCeeeeceeeccCCCC-CCceEEEEec---Cchhhhhhc-------ccc--cccEecCceEEEecCCcEEEEeecCcEEE
Q psy13046          1 FPQIWVLAIANQHSSR-QKKAIHFRHF---DSFLLFVEL-------CLL--LFPFLSRDQFVLREDGYGQVVGRIKDMII   67 (365)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~g~~~~~~~---~~~~~y~~~-------~~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~   67 (365)
                      .++||+. ..+.++.. +.|++.++.+   ..++.|+++       ||.  .+.|.|||.+++|+||+++|+||.||+||
T Consensus       424 ~v~i~de-~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviN  502 (626)
T KOG1175|consen  424 DVQILDE-NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVIN  502 (626)
T ss_pred             ceEEECC-CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEeccccccc
Confidence            3688888 66777655 7899997664   345555544       565  67799999999999999999999999999


Q ss_pred             ECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEee
Q psy13046         68 RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCE  147 (365)
Q Consensus        68 ~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~  147 (365)
                      ++|.++++.|||+++..||.|.+++|+|.|++..++.+.++++++++ ..+.++|.+.+.++++..+.++..+ ..+.+.
T Consensus       503 vsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g-~~~~~~L~kel~~~VR~~igp~a~P-~~I~~v  580 (626)
T KOG1175|consen  503 VSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG-SHDPEQLTKELVKHVRSVIGPYAVP-RLIVFV  580 (626)
T ss_pred             ccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC-CCChHHHHHHHHHHHHhhcCccccc-ceeEec
Confidence            99999999999999999999999999999999999999999999998 5567889999999998888888887 888899


Q ss_pred             eccccccCcee
Q psy13046        148 CILLKYRSAST  158 (365)
Q Consensus       148 ~~l~~~~~gk~  158 (365)
                      +.||++.+||+
T Consensus       581 ~~LPkTrSGKi  591 (626)
T KOG1175|consen  581 PGLPKTRSGKI  591 (626)
T ss_pred             CCCCccccchh
Confidence            99999999999

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.82  E-value=1.4e-19  Score=182.34  Aligned_cols=147  Identities=19%  Similarity=0.198  Sum_probs=119.8

Q ss_pred             ccCCCCCCceEEEEec---Cchhhhhhc------ccc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRHF---DSFLLFVEL------CLL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~---~~~~~y~~~------~~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +.++.++.|||+++++   ..+.+|+++      +|.  .+||+|||++++|+||+++|.||.||+||++|++|+|.+||
T Consensus       452 ~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE  531 (647)
T PTZ00237        452 KELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIE  531 (647)
T ss_pred             CCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHH
Confidence            4566788999999986   678899876      343  68999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCC---CCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN---AKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~---~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      +++.+||.|.+++|+|++++..++.+.++|+++++   ...+.+++.+.+++.+...+.....+ ..+.+.+.+|++.+|
T Consensus       532 ~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P-~~i~~v~~lP~T~sG  610 (647)
T PTZ00237        532 TSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVL-RKIIIVNQLPKTKTG  610 (647)
T ss_pred             HHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccC-cEEEEcCCCCCCCCc
Confidence            99999999999999999999888999999988743   23344555545444444444444444 566677889999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       611 Ki  612 (647)
T PTZ00237        611 KI  612 (647)
T ss_pred             cE
Confidence            99

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.81  E-value=7.9e-21  Score=181.60  Aligned_cols=119  Identities=13%  Similarity=0.026  Sum_probs=98.3

Q ss_pred             hhccCCCCccccccCCcccccccccccc-cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQ-SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +.+.++...+.+. ||+||++.+++... ........++|+|+|+++++|+|++++...+ .+..||+ ++||+++.||+
T Consensus       297 ~~~~~~~~~i~~~-YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~-~g~~Gei~i~~~~~~~gy~  374 (417)
T PF00501_consen  297 LRKAFGNAPIINL-YGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLP-PGEPGEIVIRGPNVFSGYY  374 (417)
T ss_dssp             HHHHHTTSEEEEE-EEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBES-TTSEEEEEEESTTSBSEET
T ss_pred             cccccccccceec-ccccccceeeeccccccccccccccccccccccccccccccccccc-ccccccccccCCccceeee
Confidence            3344555588888 99999998876432 2222467789999999999999988454443 3577998 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeC
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRG  301 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~  301 (365)
                      ++|+.+++.|.++|||+|||+|++|+||+++++||.||+||++
T Consensus       375 ~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  375 NDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             ccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            9999999999756899999999999999999999999999985

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.81  E-value=2.1e-19  Score=176.00  Aligned_cols=147  Identities=16%  Similarity=0.090  Sum_probs=117.5

Q ss_pred             ccCCCC--CCceEEEEecCc--hhhhhhc-----cccc---------ccEecCceEEEecCCcEEEEeecCcEEEECCEE
Q psy13046         11 NQHSSR--QKKAIHFRHFDS--FLLFVEL-----CLLL---------FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGEN   72 (365)
Q Consensus        11 ~~~~~~--~~g~~~~~~~~~--~~~y~~~-----~~~~---------~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~   72 (365)
                      +.++.+  +.|||+++++..  +.+|++.     ++++         .||+|||++++|+||+++|.||.||+||++|+|
T Consensus       310 ~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~  389 (499)
T PLN03051        310 VPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIK  389 (499)
T ss_pred             CCCCCCCCcceEEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEE
Confidence            345555  479999999965  5688754     2221         268999999999999999999999999999999


Q ss_pred             echHhHHHHHhc-CCCcceEEEEEeeCCCCC-ceEEEEE---EEcCCC-CCCHHHHHHHHHhhhhhcccceEEEeeeEEe
Q psy13046         73 IYPKEIEEFIQT-HPNVLEAYAYGVPDERMG-EEVGISI---KLKENA-KLNADDIRTFCKGKVKRKISCIFIIIVRISC  146 (365)
Q Consensus        73 v~p~~ie~~l~~-~~~V~~~~v~~vp~~~~~-~~~~~~v---~~~~~~-~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~  146 (365)
                      |+|.|||++|.+ ||.|.+++|+++|++..+ +.++++|   +++++. ..+.+++.+++++.+...+.....+ ..+.+
T Consensus       390 v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~-~~i~~  468 (499)
T PLN03051        390 TSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKV-SRVKI  468 (499)
T ss_pred             CCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCC-ceEEE
Confidence            999999999986 999999999999998888 6788888   666553 3566788888877766554433333 34667


Q ss_pred             eeccccccCcee
Q psy13046        147 ECILLKYRSAST  158 (365)
Q Consensus       147 ~~~l~~~~~gk~  158 (365)
                      .+.+|++.+||+
T Consensus       469 v~~lP~t~~GKi  480 (499)
T PLN03051        469 VPELPRNASNKL  480 (499)
T ss_pred             cCCCCCCCCccH
Confidence            789999999998

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.81  E-value=3.9e-19  Score=171.79  Aligned_cols=137  Identities=24%  Similarity=0.261  Sum_probs=120.7

Q ss_pred             CCCceEEEEecCchhhhhhccc-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEEEE
Q psy13046         16 RQKKAIHFRHFDSFLLFVELCL-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAY   94 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~   94 (365)
                      ++.||++++++..+.+|++..+ ..+||+|||++++|+||+++|.||.||+|+++|.+|+|.+||.++.+||.|.+++|+
T Consensus       299 g~~Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~  378 (452)
T PRK07445        299 NQTGNITIQAQSLALGYYPQILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVL  378 (452)
T ss_pred             CCcceEEEeCCccchhhcCCccCCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence            5789999999999999998765 568999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         95 GVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        95 ~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++++..++.++++++..++ ..+.+++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       379 g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~L~~~~~P~-----~i~~v~~lP~t~~GKi  436 (452)
T PRK07445        379 GLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQLSPFKQPK-----HWIPVPQLPRNPQGKI  436 (452)
T ss_pred             eccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHhCCcccCCe-----EEEEecCCCCCCCccc
Confidence            99998888888888887654 3567888999888887666553     3446678999999988

>PLN02654 acetate-CoA ligase

Probab=99.81  E-value=3.2e-19  Score=180.36  Aligned_cols=143  Identities=20%  Similarity=0.213  Sum_probs=118.5

Q ss_pred             ccCCCCCCceEEEEe--cCchhhhhhc-------ccc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRH--FDSFLLFVEL-------CLL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~--~~~~~~y~~~-------~~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +.++.++.|++++++  +..+.+|+++       |+.  .+||+|||++++|+||+++|.||.||+||++|.+|+|.+||
T Consensus       473 ~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE  552 (666)
T PLN02654        473 KEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVE  552 (666)
T ss_pred             CCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHH
Confidence            344555689999998  6889999876       232  68999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      +++.+||.|.+++|++++++..++.+.++|+++++...+.   +++.+++++.+..+..+     ..+.+.+.+|++.+|
T Consensus       553 ~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P-----~~i~~v~~lP~T~sG  627 (666)
T PLN02654        553 SALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAP-----DKIHWAPGLPKTRSG  627 (666)
T ss_pred             HHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCC-----CEEEECCCCCCCCCc
Confidence            9999999999999999999988999999999987654432   24455555555444443     456677889999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       628 Ki  629 (666)
T PLN02654        628 KI  629 (666)
T ss_pred             Cc
Confidence            99

>PRK07529 AMP-binding domain protein; Validated

Probab=99.80  E-value=6.1e-19  Score=177.42  Aligned_cols=143  Identities=27%  Similarity=0.295  Sum_probs=124.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      ..++.++.|||+++++..+.+|++..      +..+||+|||++++|+||+++|.||.||+|+.+|.+|+|.+||+++.+
T Consensus       410 ~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~  489 (632)
T PRK07529        410 RDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLR  489 (632)
T ss_pred             ccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHh
Confidence            44667889999999999999998662      367899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhh-cccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKR-KISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ||.|.++++++.|++..++.++++|++.++...+.+++.+++++++.. ...+     ..+.+.+.+|++.+||+
T Consensus       490 ~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P-----~~i~~v~~lP~t~~GKi  559 (632)
T PRK07529        490 HPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVP-----KHVRILDALPKTAVGKI  559 (632)
T ss_pred             CCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCC-----cEEEEecCCCCCCCCcc
Confidence            999999999999998889999999999887777788999999988753 2233     33445678999999999

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.80  E-value=6.5e-19  Score=174.92  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=125.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ++++.++.|||+++++..+.+|+++.      | ..+||+|||++++|+||+++|.||.||+|+++|++|+|.+||.+|.
T Consensus       394 ~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~  473 (560)
T PLN02574        394 CLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLI  473 (560)
T ss_pred             cCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHH
Confidence            45667889999999999999999763      2 5799999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.++++++++++..++.++++++.+++...+.+++.+++++.+..++.+     ..+.+.+.+|++.+||+
T Consensus       474 ~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p-----~~v~~v~~iP~t~~GKi  543 (560)
T PLN02574        474 SHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKV-----RKVVFVQSIPKSPAGKI  543 (560)
T ss_pred             hCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccC-----cEEEEeeccCCCCcchh
Confidence            99999999999999988888888888887766667788999998888776655     34556678999988988

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.79  E-value=2e-19  Score=160.57  Aligned_cols=150  Identities=27%  Similarity=0.256  Sum_probs=131.3

Q ss_pred             eeee-ceeeccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEec
Q psy13046          3 QIWV-LAIANQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIY   74 (365)
Q Consensus         3 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~   74 (365)
                      +||+ ++-.+++++||.|++..||+--++||+...      | .+|.|+|||++++|+||++.+.||.||+||.+|++|.
T Consensus       369 EvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIA  448 (542)
T COG1021         369 EVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIA  448 (542)
T ss_pred             eeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhh
Confidence            3443 345589999999999999999999999773      4 6899999999999999999999999999999999999


Q ss_pred             hHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhh-hhcccceEEEeeeEEeeeccccc
Q psy13046         75 PKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKV-KRKISCIFIIIVRISCECILLKY  153 (365)
Q Consensus        75 p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l-~~~~~~~~~~~~~~~~~~~l~~~  153 (365)
                      .+|||+.|..||.|.++++++.|++..|+..|++++.++.. ....+|.+++.+.. ..++-+     .++.+.+.+|.+
T Consensus       449 AeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~-~~~~qlr~~L~~~GlAa~K~P-----Drie~v~~~P~T  522 (542)
T COG1021         449 AEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPP-LRAAQLRRFLRERGLAAFKLP-----DRIEFVDSLPLT  522 (542)
T ss_pred             HHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCC-CCHHHHHHHHHHcchhhhcCC-----cceeecccCCCc
Confidence            99999999999999999999999999999999999988643 67788999988764 333333     677788999999


Q ss_pred             cCcee
Q psy13046        154 RSAST  158 (365)
Q Consensus       154 ~~gk~  158 (365)
                      +.||+
T Consensus       523 ~VGKI  527 (542)
T COG1021         523 AVGKI  527 (542)
T ss_pred             ccccc
Confidence            99998

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.79  E-value=2e-18  Score=171.09  Aligned_cols=143  Identities=26%  Similarity=0.329  Sum_probs=126.2

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc---cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCC
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC---LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN   87 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~---~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~   87 (365)
                      +.++.++.||++++++..+.+|++..   ...+||+|||++++|+||+++|.||.||+|+++|.+|+|.+||+++.+||.
T Consensus       395 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~  474 (549)
T PRK07788        395 NEVPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPD  474 (549)
T ss_pred             CCCCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCC
Confidence            44566889999999999999998763   346899999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         88 VLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        88 V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.++++++++++..++.+.++|+++++...+.+++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       475 V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~-----~i~~v~~lP~t~~GKi  540 (549)
T PRK07788        475 VVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPR-----DVVFLDELPRNPTGKV  540 (549)
T ss_pred             eeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCc-----EEEEeCCCCCCCCcCE
Confidence            99999999999888899999999888766778899999999887765553     3445678999999998

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.78  E-value=1.5e-18  Score=175.19  Aligned_cols=139  Identities=14%  Similarity=0.053  Sum_probs=116.5

Q ss_pred             CCCCceEEEEec--Cchhhhhhcc---------cc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHH
Q psy13046         15 SRQKKAIHFRHF--DSFLLFVELC---------LL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF   81 (365)
Q Consensus        15 ~~~~g~~~~~~~--~~~~~y~~~~---------~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~   81 (365)
                      .++.|||+++++  ..+.+|++..         |.  .+||+|||++++|+||+++|.||.||+||++|++|+|.|||++
T Consensus       461 ~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~  540 (652)
T TIGR01217       461 TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNA  540 (652)
T ss_pred             CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHH
Confidence            368999999996  5788888652         32  5789999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         82 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        82 l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.+||.|.+++|+++|++..++.++++|+++++...+.   +++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       541 l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~v~~lP~T~sGKi  615 (652)
T TIGR01217       541 VERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVP-----DEIIEVPGIPHTLTGKR  615 (652)
T ss_pred             HHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCC-----CEEEECCCCCCCCCccC
Confidence            99999999999999999988999999999987654442   35666666655555444     44557788999999999

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.77  E-value=4.1e-18  Score=171.43  Aligned_cols=143  Identities=21%  Similarity=0.260  Sum_probs=119.1

Q ss_pred             ccCC-CCCCceEEEEe--cCchhhhhhcc-------c--ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhH
Q psy13046         11 NQHS-SRQKKAIHFRH--FDSFLLFVELC-------L--LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI   78 (365)
Q Consensus        11 ~~~~-~~~~g~~~~~~--~~~~~~y~~~~-------~--~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~i   78 (365)
                      +.++ .++.|||++++  +..+.+|++..       +  ..+||+|||++++|+||+++|.||.||+|+++|.+|+|.+|
T Consensus       434 ~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eI  513 (625)
T TIGR02188       434 NPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEI  513 (625)
T ss_pred             CCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHH
Confidence            3445 67899999999  57889998762       3  36899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccC
Q psy13046         79 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRS  155 (365)
Q Consensus        79 e~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  155 (365)
                      |+++.+||.|.+++|++++++..++.++++|+++++...+.   +++.+++++.+..+..+     ..+.+.+.+|++.+
T Consensus       514 E~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~v~~lP~t~s  588 (625)
T TIGR02188       514 ESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKP-----DKIRFVPGLPKTRS  588 (625)
T ss_pred             HHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccC-----cEEEECCCCCCCCC
Confidence            99999999999999999999988999999999887654332   45666666665554444     44456678999999


Q ss_pred             cee
Q psy13046        156 AST  158 (365)
Q Consensus       156 gk~  158 (365)
                      ||+
T Consensus       589 GKi  591 (625)
T TIGR02188       589 GKI  591 (625)
T ss_pred             ccc
Confidence            998

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.77  E-value=3.4e-18  Score=170.38  Aligned_cols=137  Identities=21%  Similarity=0.261  Sum_probs=118.3

Q ss_pred             CCceEEEEecCchhhhhhc------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcce
Q psy13046         17 QKKAIHFRHFDSFLLFVEL------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE   90 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~   90 (365)
                      +.|||+++++..+.+|++.      .|..+||+|||++++|+||+++|.||.||+|+++|.+|+|.+||+++.+||.|.+
T Consensus       391 ~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~  470 (579)
T PLN03102        391 TMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLE  470 (579)
T ss_pred             CceEEEEECcchhhhhcCChhhhHhhhccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcce
Confidence            5799999999999999976      3568999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCCCceEEEEEEEcCCCCC----------CHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         91 AYAYGVPDERMGEEVGISIKLKENAKL----------NADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        91 ~~v~~vp~~~~~~~~~~~v~~~~~~~~----------~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++|++++++..++.+.++|++.++...          ...++.++++++++.+..+     ..+.+.+.+|++.+||+
T Consensus       471 a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P-----~~i~~~~~~P~t~~gKi  543 (579)
T PLN03102        471 TAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCP-----RKVVFLQELPKNGNGKI  543 (579)
T ss_pred             eEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCC-----eEEEEcccCCCCCcccc
Confidence            999999998888889999887754322          2456788888877776655     34446678999999988

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.77  E-value=5.6e-18  Score=170.77  Aligned_cols=143  Identities=21%  Similarity=0.252  Sum_probs=120.0

Q ss_pred             ccCCCCCCceEEEEe--cCchhhhhhcc-------c--ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRH--FDSFLLFVELC-------L--LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~--~~~~~~y~~~~-------~--~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +.++.++.||+++++  +..+.+|+++.       +  ..+||+|||++++|+||+++|.||.||+|+++|.+|+|.+||
T Consensus       443 ~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE  522 (637)
T PRK00174        443 NPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE  522 (637)
T ss_pred             CCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHH
Confidence            455678899999999  58899998762       2  368999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC---HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~---~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      ++|.+||.|.+++|++++++..++.+++++++.++...+   .+++.+++++.+..+..+     ..+.+.+.+|++.+|
T Consensus       523 ~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P-----~~i~~v~~lP~t~~G  597 (637)
T PRK00174        523 SALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKP-----DVIQFAPGLPKTRSG  597 (637)
T ss_pred             HHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCC-----CEEEEcCCCCCCCCc
Confidence            999999999999999999988899999999988765433   346666666666555444     345566789999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       598 Ki  599 (637)
T PRK00174        598 KI  599 (637)
T ss_pred             ch
Confidence            98

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.77  E-value=5.1e-18  Score=170.74  Aligned_cols=144  Identities=23%  Similarity=0.219  Sum_probs=116.0

Q ss_pred             eccCCCCCCceEEEEec---Cchhhhhhc-------c---cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechH
Q psy13046         10 ANQHSSRQKKAIHFRHF---DSFLLFVEL-------C---LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPK   76 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~---~~~~~y~~~-------~---~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~   76 (365)
                      .++++.++.|||+++++   ..+.+|++.       |   +..+||+|||++++|+||+++|.||.||+||++|.+|+|.
T Consensus       429 g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~  508 (628)
T TIGR02316       429 GRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTR  508 (628)
T ss_pred             CCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHH
Confidence            35566788999999997   345666644       2   2467999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCC--------CHHHHHHHHHhhhhhcccceEEEeeeEEeee
Q psy13046         77 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL--------NADDIRTFCKGKVKRKISCIFIIIVRISCEC  148 (365)
Q Consensus        77 ~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~--------~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~  148 (365)
                      |||+++.+||.|.+++|++++++..++.++++|+++++...        ..+++.+++++.+..+..+     ..+.+.+
T Consensus       509 eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P-----~~v~~v~  583 (628)
T TIGR02316       509 EIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARP-----ARVYFVA  583 (628)
T ss_pred             HHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCC-----CEEEEcC
Confidence            99999999999999999999999889999999988764321        1245555666555554444     4455678


Q ss_pred             ccccccCcee
Q psy13046        149 ILLKYRSAST  158 (365)
Q Consensus       149 ~l~~~~~gk~  158 (365)
                      .+|++.+||+
T Consensus       584 ~lP~t~sGKi  593 (628)
T TIGR02316       584 ALPKTRSGKL  593 (628)
T ss_pred             CCCCCCchHH
Confidence            8999999998

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.77  E-value=2.5e-18  Score=173.19  Aligned_cols=142  Identities=19%  Similarity=0.166  Sum_probs=117.0

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cc------------------cccEecCceEEEecCCcEEEEeecCcEE
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LL------------------LFPFLSRDQFVLREDGYGQVVGRIKDMI   66 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~------------------~~~~~tgDl~~~~~~g~~~i~GR~~d~i   66 (365)
                      +.++.++.|||+++++..+.+|+++.      |.                  .+||+|||+++++ ||+++|.||.||+|
T Consensus       411 ~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~I  489 (631)
T PRK07769        411 SELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLV  489 (631)
T ss_pred             cCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEE
Confidence            34567889999999999999999863      21                  3899999999995 99999999999999


Q ss_pred             EECCEEechHhHHHHHhc-CCCcce--EEEEEeeC-------------------CCCCceEEEEEEEcCC-CCCCHHHHH
Q psy13046         67 IRGGENIYPKEIEEFIQT-HPNVLE--AYAYGVPD-------------------ERMGEEVGISIKLKEN-AKLNADDIR  123 (365)
Q Consensus        67 ~~~G~~v~p~~ie~~l~~-~~~V~~--~~v~~vp~-------------------~~~~~~~~~~v~~~~~-~~~~~~~L~  123 (365)
                      |++|++|+|.|||.++.+ ||.|.+  ++++++|+                   +..++.++++++++++ ...+.++|.
T Consensus       490 k~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~  569 (631)
T PRK07769        490 IIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIA  569 (631)
T ss_pred             EECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHH
Confidence            999999999999999996 899997  89999998                   4567888899988775 345678899


Q ss_pred             HHHHhhhhhc-c-cceEEEeeeEEee--eccccccCcee
Q psy13046        124 TFCKGKVKRK-I-SCIFIIIVRISCE--CILLKYRSAST  158 (365)
Q Consensus       124 ~~l~~~l~~~-~-~~~~~~~~~~~~~--~~l~~~~~gk~  158 (365)
                      +++++.+... . .++.     +.+.  +.+|++.+||+
T Consensus       570 ~~~~~~l~~~~~~~p~~-----~~~v~~~~lP~t~~GKi  603 (631)
T PRK07769        570 DDIRAAIAVRHGVTVRD-----VLLVPAGSIPRTSSGKI  603 (631)
T ss_pred             HHHHHHHHHHcCCCccE-----EEEECCCccccCCCcHH
Confidence            9999988753 2 2322     2233  36999999998

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.76  E-value=8.3e-18  Score=166.19  Aligned_cols=143  Identities=27%  Similarity=0.315  Sum_probs=123.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc---cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCC
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC---LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN   87 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~---~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~   87 (365)
                      +.++.++.||++++++.+|.+|++..   +..+||+|||++++|+||+++|.||.||+|+.+|.+|+|.+||.++.+||.
T Consensus       384 ~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~  463 (537)
T PRK13382        384 REVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPD  463 (537)
T ss_pred             CCCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCC
Confidence            45567788999999999999998442   347899999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         88 VLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        88 V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.++++++++++..++.+.+++++.++.....+++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       464 V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~v~~lP~t~~gK~  529 (537)
T PRK13382        464 VAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPR-----DIVVLDELPRGATGKI  529 (537)
T ss_pred             EeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCc-----EEEEeccCCCCCCCCC
Confidence            99999999999888888999998877666677889999998887766553     3445567899988888

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.76  E-value=1.1e-17  Score=166.19  Aligned_cols=143  Identities=23%  Similarity=0.319  Sum_probs=125.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..      | ..+||+|||++++|++|+++|.||.+|+|+++|.+|+|.+||+++.
T Consensus       397 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~  476 (562)
T PRK05677        397 NELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA  476 (562)
T ss_pred             CCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHH
Confidence            45677889999999999999999763      3 4789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +|+.|.++++++++++..++.++++++..++.+.+.+++.+++++.++.+..+     ..+.+.+.+|++.+||+
T Consensus       477 ~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~v~~iP~t~sGKi  546 (562)
T PRK05677        477 ALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVP-----KAVEFRDELPTTNVGKI  546 (562)
T ss_pred             hCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCC-----cEEEEeccCCCCCcccc
Confidence            99999999999999988888888888877666677788999999888766555     34556678999999998

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.76  E-value=1.2e-17  Score=164.69  Aligned_cols=136  Identities=21%  Similarity=0.231  Sum_probs=119.5

Q ss_pred             CceEEE-EecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcce
Q psy13046         18 KKAIHF-RHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE   90 (365)
Q Consensus        18 ~g~~~~-~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~   90 (365)
                      .||+++ ++++.+.+|++..      |..+||+|||+++++++|+++|.||.||+|+++|.+|+|.+||+++.+||.|.+
T Consensus       352 ~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~  431 (529)
T PRK07867        352 IGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATE  431 (529)
T ss_pred             ceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeE
Confidence            799998 9999999999763      567899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh--hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         91 AYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK--VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        91 ~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~--l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++|++++++..++.+.+++++.++...+.+++.++++..  +..+..+     ..+.+.+.+|++.+||+
T Consensus       432 ~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P-----~~i~~~~~iP~t~~GKv  496 (529)
T PRK07867        432 VAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWP-----SYVRVCAELPRTATFKV  496 (529)
T ss_pred             EEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCC-----eEEEEeeccCCCCCcce
Confidence            999999998889999999998887677888888888763  4444333     34556688999999998

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.76  E-value=1e-17  Score=165.43  Aligned_cols=143  Identities=26%  Similarity=0.319  Sum_probs=124.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +.++.++.||++++++..+.+|+++.      |..+||+|||++++|+||++++.||.+|+|+.+|.+|+|.+||.++.+
T Consensus       373 ~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~  452 (534)
T PRK05852        373 LPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLAS  452 (534)
T ss_pred             CCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHh
Confidence            45667789999999999999999873      457899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ||.|.+++|++++++..++.+.++++..+....+.+++.+++++.++.+..+     ..+.+.+.+|++.+||+
T Consensus       453 ~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P-----~~i~~v~~iP~t~~GKi  521 (534)
T PRK05852        453 HPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIP-----ASFQEASGLPHTAKGSL  521 (534)
T ss_pred             CCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccccCC-----eEEEEhhhcCCCCCccc
Confidence            9999999999999987788888888876655567788999998887665544     34556678999999998

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.76  E-value=1.1e-17  Score=170.41  Aligned_cols=143  Identities=15%  Similarity=0.108  Sum_probs=120.4

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc---c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCC
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC---L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP   86 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~---~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~   86 (365)
                      +.++.++.||++++++..+.+|++..   + ..+||+|||++++++||+++|.||.||+||++|++|+|.+||.++.+|+
T Consensus       332 ~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~  411 (705)
T PRK06060        332 TTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDE  411 (705)
T ss_pred             CCCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCC
Confidence            44567889999999999999999874   2 4689999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         87 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        87 ~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .|.+++|+++++...++.+.++++...+...+.   .++.+++++.++.++.+     ..+.+.+.+|++.+||+
T Consensus       412 ~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P-----~~i~~v~~iP~t~~GKi  481 (705)
T PRK06060        412 AVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVP-----HRFAVVDRLPRTPNGKL  481 (705)
T ss_pred             CeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCC-----cEEEEeecCCCCcchhh
Confidence            999999999999877788888888776544332   35666777777665544     34446678999999998

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.75  E-value=1.2e-17  Score=168.79  Aligned_cols=139  Identities=18%  Similarity=0.110  Sum_probs=115.5

Q ss_pred             CCCCceEEEEec--Cchhhhhhcc---------cc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHH
Q psy13046         15 SRQKKAIHFRHF--DSFLLFVELC---------LL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF   81 (365)
Q Consensus        15 ~~~~g~~~~~~~--~~~~~y~~~~---------~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~   81 (365)
                      .++.|||+++++  ..+.+|++..         |.  .+||+|||++++|+||+++|.||.||+||++|.+|+|.|||.+
T Consensus       460 ~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~  539 (655)
T PRK03584        460 VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQ  539 (655)
T ss_pred             CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHH
Confidence            478999999996  6788888642         21  4789999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         82 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        82 l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.+||.|.+++|++++++..++.+.++|+++++...+.   +++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       540 l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P-----~~i~~v~~lP~t~sGKi  614 (655)
T PRK03584        540 VEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVP-----DKIIAVPDIPRTLSGKK  614 (655)
T ss_pred             HHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCC-----CEEEECCCCCCCCCccc
Confidence            99999999999999999888899999999887644442   35556666555544433     45567788999999998

>PRK09274 peptide synthase; Provisional

Probab=99.75  E-value=1.2e-17  Score=165.62  Aligned_cols=145  Identities=13%  Similarity=-0.006  Sum_probs=118.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c---ccc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L---LLF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~---~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      ..++.++.|||+++++..+.+|+++.      |   ..+  ||+|||++++|+||+++|.||.||+|+++|.+|+|.+||
T Consensus       380 ~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE  459 (552)
T PRK09274        380 LRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCE  459 (552)
T ss_pred             ccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHH
Confidence            34667889999999999999999862      1   245  999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccc--cCce
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKY--RSAS  157 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~--~~gk  157 (365)
                      .++.+||.|.++++++++++ .++.+.++|++.++...+.+++.+.+++.+..+... ..+ ..+.+.+.+|++  .+||
T Consensus       460 ~~l~~~p~V~~~~v~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~-~~~~~~~~lP~t~~~~GK  536 (552)
T PRK09274        460 RIFNTHPGVKRSALVGVGVP-GAQRPVLCVELEPGVACSKSALYQELRALAAAHPHT-AGI-ERFLIHPSFPVDIRHNAK  536 (552)
T ss_pred             HHHHhCcccceeEEEEeCCC-CCceEEEEEEccCccccchHHHhhhhHHHHHhcCCC-cce-eEEeccCCCCcccccccc
Confidence            99999999999999999876 456777888887765556666777887776655322 222 556677789987  6788


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus       537 i  537 (552)
T PRK09274        537 I  537 (552)
T ss_pred             c
Confidence            7

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.75  E-value=2.1e-17  Score=161.62  Aligned_cols=142  Identities=25%  Similarity=0.241  Sum_probs=124.7

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      .++.++.||++++++..+.+|++..      +..+||+|||++++|++|++++.||.+|+|+.+|.+|+|.+||.++.++
T Consensus       337 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~  416 (496)
T PRK06839        337 KVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKL  416 (496)
T ss_pred             CCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence            3567789999999999999998763      4678999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         86 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        86 ~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.|.++++++++++..++.++++++..++...+.+++.+++++.++.+..+     ..+.+.+.+|++.+||+
T Consensus       417 ~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~~~~v~~~P~t~~GKi  484 (496)
T PRK06839        417 SDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIP-----KEIVFLKELPKNATGKI  484 (496)
T ss_pred             CCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCC-----cEEEEeccCCCCccccc
Confidence            999999999999988888899999988776667788999988887766544     33456688999999998

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.75  E-value=8.6e-18  Score=158.22  Aligned_cols=136  Identities=13%  Similarity=0.109  Sum_probs=102.1

Q ss_pred             CCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEEeecCcccccccCCCccc
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRGLPARV  264 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei~~g~~~~~gY~~~~~~~  264 (365)
                      ++...+.+. ||+||+++++....      ....|+++|++++++ + ++.          +  .|+             
T Consensus       228 ~g~~~v~~~-YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~-~-~~~----------~--~g~-------------  273 (386)
T TIGR02372       228 AGLARLLEV-YGATETGGIGLREA------PDDPFRLLPDLACFA-D-TLS----------S--AGL-------------  273 (386)
T ss_pred             hcccchhhe-eccccccccccccC------CCCCcccCCCccccC-C-Ccc----------C--CCc-------------
Confidence            333456777 99999987544211      123477888766543 1 100          0  011             


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                            ..|++|||++++|++|+|+|.||+||+||++|++|+|.+||++|.+||+|.+++|..     .++.++|+|+++
T Consensus       274 ------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~  342 (386)
T TIGR02372       274 ------ARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVA  342 (386)
T ss_pred             ------cceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEEC
Confidence                  236899999999999999999999999999999999999999999999999998863     356899999988


Q ss_pred             CCCCCC--HHHHHHHHHcccCCC
Q psy13046        345 ENAKLN--ADDIRTFCKGKVSKF  365 (365)
Q Consensus       345 ~~~~~~--~~~l~~~~~~~l~~y  365 (365)
                      ++...+  .++++++++++|++|
T Consensus       343 ~~~~~~~~~~~l~~~~~~~L~~~  365 (386)
T TIGR02372       343 EDADEAELEIELRATAARHLPAP  365 (386)
T ss_pred             CCCChHHHHHHHHHHHHHhCCCC
Confidence            654333  468999999999876

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.75  E-value=1.7e-17  Score=164.89  Aligned_cols=139  Identities=24%  Similarity=0.312  Sum_probs=115.3

Q ss_pred             CCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCc
Q psy13046         16 RQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      ++.||++++++..+.+|++..      + ..+||+|||++++|+||+++|.||.||+|+++|++|+|.+||+++.+||.|
T Consensus       383 g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V  462 (563)
T PLN02860        383 SRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGV  462 (563)
T ss_pred             CceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCc
Confidence            578999999999999999763      2 478999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcCCC--------------CCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccc
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKENA--------------KLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKY  153 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~~~--------------~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~  153 (365)
                      .+++|++++++..++.++++++++++.              ..+.+.+.+++.+ .++.+..+...    ..+.+.+|++
T Consensus       463 ~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~----~~~~~~lP~t  538 (563)
T PLN02860        463 ASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLF----VQWRKPFPLT  538 (563)
T ss_pred             ceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEE----EEEecCCCCC
Confidence            999999999988889999999887641              2345667777765 36555444322    1234568999


Q ss_pred             cCcee
Q psy13046        154 RSAST  158 (365)
Q Consensus       154 ~~gk~  158 (365)
                      .+||+
T Consensus       539 ~~GKi  543 (563)
T PLN02860        539 TTGKI  543 (563)
T ss_pred             cccch
Confidence            88988

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.75  E-value=2.8e-17  Score=162.57  Aligned_cols=143  Identities=23%  Similarity=0.278  Sum_probs=123.7

Q ss_pred             ccCCCCCCceEEEEec---Cchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHH
Q psy13046         11 NQHSSRQKKAIHFRHF---DSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF   81 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~---~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~   81 (365)
                      +.++.++.||++++++   ..+.+|++..      |..+||+|||++++++||+++|.||.+|+|+++|.+|+|.+||.+
T Consensus       362 ~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~  441 (542)
T PRK06155        362 QELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQV  441 (542)
T ss_pred             CCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHH
Confidence            4466778999999998   5899998763      568999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         82 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        82 l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++||.|.+++|+++++...++.+.+++++..+...+..++.+++++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       442 l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~-----~i~~~~~iP~t~~GKi  513 (542)
T PRK06155        442 LLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPR-----YVEFVAALPKTENGKV  513 (542)
T ss_pred             HHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCc-----EEEEeccCCCCcccce
Confidence            99999999999999999877788888888877666778889999998887665553     3335577999999999

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.75  E-value=2.8e-17  Score=160.45  Aligned_cols=142  Identities=25%  Similarity=0.258  Sum_probs=122.2

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      .++.++.||++++++..+.+|++..      + ..+||+|||++++|++|+++|.||.||+|+.+|.+++|.+||+++.+
T Consensus       326 ~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~  405 (488)
T PRK09088        326 DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLAD  405 (488)
T ss_pred             CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHh
Confidence            3556778999999999999999763      2 47899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +|.|.++++++++++..++...+++++.++...+.+++.+++++.+..+..+.     .+...+.+|++.+||+
T Consensus       406 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-----~i~~~~~iP~t~~gKi  474 (488)
T PRK09088        406 HPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPK-----HLRLVDALPRTASGKL  474 (488)
T ss_pred             CCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCC-----EEEEcccCCCCCCCce
Confidence            99999999999998777788888888876655567889999998887665443     3445678999988888

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.74  E-value=1.9e-17  Score=164.88  Aligned_cols=142  Identities=25%  Similarity=0.275  Sum_probs=119.6

Q ss_pred             cCCCCCCceEEEEe--cCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         12 QHSSRQKKAIHFRH--FDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        12 ~~~~~~~g~~~~~~--~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      .++.++.||+++++  +..|.+|++..      |..+||+|||++++|++|+++|.||.||+|+.+|++|+|.+||+.+.
T Consensus       396 ~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~  475 (570)
T PRK04319        396 ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM  475 (570)
T ss_pred             CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHh
Confidence            45677899999987  78999999773      45789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC---HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~---~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.++++++++++..++.+.+++++.++...+   .+++.+++++++..+..+.     .+.+.+.+|++.+||+
T Consensus       476 ~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~-----~i~~v~~iP~t~~GKv  548 (570)
T PRK04319        476 EHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPR-----EIEFKDKLPKTRSGKI  548 (570)
T ss_pred             hCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCc-----EEEEeCCCCCCCchhh
Confidence            99999999999999988899999999887754333   2466777777666655553     3446678999999998

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.74  E-value=2.9e-17  Score=154.04  Aligned_cols=135  Identities=21%  Similarity=0.258  Sum_probs=117.2

Q ss_pred             CceEEEEecCchhhhhhcc-----cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEE
Q psy13046         18 KKAIHFRHFDSFLLFVELC-----LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY   92 (365)
Q Consensus        18 ~g~~~~~~~~~~~~y~~~~-----~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~   92 (365)
                      .|+++++++..+.+|++..     ...+||+|||++++ ++|+++|.||.||+|+.+|.+|+|.+||.++.+||.|.+++
T Consensus       207 ~Gei~v~g~~~~~gY~~~~~~~~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~  285 (358)
T PRK07824        207 DGRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCA  285 (358)
T ss_pred             CCEEEEecCccccccCCCcccccccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEE
Confidence            5899999999999998763     24679999999999 89999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         93 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        93 v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |++++++..++.+.++++...+.....+++.+++++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       286 vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~-----~i~~v~~lP~t~~GKi  346 (358)
T PRK07824        286 VFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPR-----ELHVVDELPRRGIGKV  346 (358)
T ss_pred             EEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCC-----EEEEecCCCCCCCccc
Confidence            999999888888888888776556677889999998887765553     3445678999998988

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.74  E-value=2e-17  Score=163.06  Aligned_cols=141  Identities=21%  Similarity=0.159  Sum_probs=112.5

Q ss_pred             CCCCCCceEEEEecCchhhhhhcc--cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcce
Q psy13046         13 HSSRQKKAIHFRHFDSFLLFVELC--LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE   90 (365)
Q Consensus        13 ~~~~~~g~~~~~~~~~~~~y~~~~--~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~   90 (365)
                      ++.++.|||+++++..|.+|++..  ...+||+|||++++| +|+++|.||.||+||++|++|+|.+||.++.+||.|.+
T Consensus       367 ~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~  445 (525)
T PRK05851        367 VAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVRE  445 (525)
T ss_pred             CCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCccc
Confidence            556788999999999999999774  247899999999997 79999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeee--ccccccCcee
Q psy13046         91 AYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCEC--ILLKYRSAST  158 (365)
Q Consensus        91 ~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~--~l~~~~~gk~  158 (365)
                      ++|++++++..++...++++.... ..+.+.+.+++++++..++..  .+ ..+.+.+  .+|++.+||+
T Consensus       446 ~~vv~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~l~~~l~~--~P-~~~~~v~~~~lP~t~~GKi  511 (525)
T PRK05851        446 GAVVAVGTGEGSARPGLVIAAEFR-GPDEAGARSEVVQRVASECGV--VP-SDVVFVAPGSLPRTSSGKL  511 (525)
T ss_pred             ceEEEEEecCCCCceeEEEEEEec-CcchHHHHHHHHHHHHHHhCC--Cc-cEEEEECCCCcCcCcchHH
Confidence            999999987777766665554321 234466777777777765321  11 2334444  7999999988

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.74  E-value=3.3e-17  Score=161.56  Aligned_cols=142  Identities=27%  Similarity=0.303  Sum_probs=121.5

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc-------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC-------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~-------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..       ...+||+|||++++|++|++++.||.||+|+.+|.+|+|.+||+++.
T Consensus       372 ~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~  451 (527)
T TIGR02275       372 NPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL  451 (527)
T ss_pred             CCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHH
Confidence            44567789999999999999999772       25789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++++++++...++.++++++++++ ..+..++.+++++. ++.+..+     ..+.+.+.+|++.+||+
T Consensus       452 ~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~~l~~~l~~~~l~~~~~P-----~~i~~v~~iP~t~sGKv  521 (527)
T TIGR02275       452 AHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAAQLRRFLRERGLAEYKLP-----DRVEFIDSLPLTAVGKI  521 (527)
T ss_pred             hCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHHHHHHHHHhCCCccccCC-----CEEEEeccCCCCCccce
Confidence            9999999999999998888888888887764 35677888888864 5555444     44556678999999998

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.74  E-value=2.4e-17  Score=163.07  Aligned_cols=143  Identities=23%  Similarity=0.284  Sum_probs=114.8

Q ss_pred             CCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCc
Q psy13046         15 SRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        15 ~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      .++.|||+++++.++.+|+++.      |..+||+|||++++|++|+++|.||.||+|+++|.+|+|.+||.++..||.|
T Consensus       371 ~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V  450 (540)
T PRK05857        371 SASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGV  450 (540)
T ss_pred             CCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCe
Confidence            3568999999999999999763      4578999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcCCCC-CCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKENAK-LNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~~~~-~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+++++++++...++.+.++++..+... ...+++.+.+.+.+...++....+ ....+.+.+|++.+||+
T Consensus       451 ~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P-~~v~~~~~iP~t~~GKi  520 (540)
T PRK05857        451 REAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARP-STIVIVTDIPRTQSGKV  520 (540)
T ss_pred             eEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCC-eEEEEhhcCCCCCCcce
Confidence            9999999999877777777777654321 113445555555544444433333 45556778999999998

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.74  E-value=4.3e-17  Score=159.48  Aligned_cols=142  Identities=27%  Similarity=0.294  Sum_probs=123.4

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      .++.++.||++++++..+.+|++..      |..+||+|||++++|++|++++.||.||+|+++|.+++|.+||+.+.++
T Consensus       339 ~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~  418 (497)
T PRK06145        339 WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYEL  418 (497)
T ss_pred             CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhC
Confidence            3456778999999999999999763      4568999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         86 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        86 ~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +.|.++++++.+++..++.+.+++++.+....+..++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       419 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p-----~~i~~v~~iP~t~~GKi  486 (497)
T PRK06145        419 PEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVP-----RQLKVRDELPRNPSGKV  486 (497)
T ss_pred             CCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCCCC-----CEEEEeccCCCCCcccc
Confidence            999999999999987888888888887765667788999999887766554     34556678999988888

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.74  E-value=3.3e-17  Score=162.26  Aligned_cols=143  Identities=22%  Similarity=0.206  Sum_probs=124.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|||+++++..+.+|++..      + ..+||+|||++++++||+++|.||.+|+++++|.+|+|.+||.++.
T Consensus       381 ~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~  460 (546)
T PLN02330        381 RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL  460 (546)
T ss_pred             ccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHH
Confidence            45677889999999999999999773      2 4689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++.|.+++|++++++..++.+.++|+..++...+.+++.+++++.++.+..+.     .+...+.+|++.+||+
T Consensus       461 ~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-----~~~~v~~iP~t~~GK~  530 (546)
T PLN02330        461 THPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDILNFVAANVAHYKKVR-----VVQFVDSIPKSLSGKI  530 (546)
T ss_pred             hCCchheEEEEeccccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCce-----EEEEeccCCCCCCcce
Confidence            999999999999999888888889988877655667888888888877666553     3456678999999998

>PLN02246 4-coumarate--CoA ligase

Probab=99.73  E-value=4.7e-17  Score=160.86  Aligned_cols=143  Identities=18%  Similarity=0.161  Sum_probs=123.6

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..      + ..+||+|||+++++++|++++.||.||+++.+|.+|+|.+||.++.
T Consensus       376 ~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~  455 (537)
T PLN02246        376 ASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI  455 (537)
T ss_pred             CcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHH
Confidence            45677889999999999999998763      2 5789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|+++++...++.++++++..++...+.+++.+++++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       456 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-----~i~~~~~~P~t~~GKi  525 (537)
T PLN02246        456 SHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIH-----KVFFVDSIPKAPSGKI  525 (537)
T ss_pred             hCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccc-----eEEEeccCCCCCcchh
Confidence            999999999999999888888888888877656667888888888776655553     3445678999998888

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.73  E-value=4.7e-17  Score=160.94  Aligned_cols=138  Identities=21%  Similarity=0.257  Sum_probs=118.1

Q ss_pred             CCCceEEEE-ecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCc
Q psy13046         16 RQKKAIHFR-HFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        16 ~~~g~~~~~-~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      ++.||++++ ++..+.+|+++.      |..+||+|||++++|+||++++.||.||+|+++|.+|+|.+||+++.+||.|
T Consensus       349 ~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V  428 (540)
T PRK13388        349 EAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAI  428 (540)
T ss_pred             CcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCc
Confidence            468999998 999999999763      4568999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh--hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK--VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~--l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+++|++++++..++.+.+++++.++...+.+++.++++.+  +..+..+     ....+.+.+|++.+||+
T Consensus       429 ~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P-----~~~~~v~~iP~t~~GKv  495 (540)
T PRK13388        429 NRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWP-----RYVRIAADLPSTATNKV  495 (540)
T ss_pred             eEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCC-----cEEEEeccCCCCCccee
Confidence            99999999998788888888888877667777888888653  4444443     34456688999999998

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.73  E-value=4.1e-17  Score=159.31  Aligned_cols=139  Identities=24%  Similarity=0.271  Sum_probs=120.6

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      ++++.++.||++++++..+.+|++..      +..+||+|||++++|++|++++.||.+|+|+++|.+|+|.+||+++.+
T Consensus       326 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~  405 (487)
T PRK07638        326 EEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHE  405 (487)
T ss_pred             CCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHh
Confidence            45677889999999999999999874      567899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ||.|.++++++++++..++.+.++++.    ....+++.+++++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       406 ~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~~~~l~~~~~p~-----~i~~v~~iP~t~~GKv  470 (487)
T PRK07638        406 HPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQQLKSFCLQRLSSFKIPK-----EWHFVDEIPYTNSGKI  470 (487)
T ss_pred             CCCeeeEEEEecCchhcCCeeEEEEEC----CCCHHHHHHHHHHHhhcccCCc-----EEEEecccCCCCcccc
Confidence            999999999999998778888777753    2456788888988887765553     3446678999999998

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.73  E-value=5.7e-17  Score=161.49  Aligned_cols=143  Identities=29%  Similarity=0.435  Sum_probs=124.0

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhc------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVEL------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      ..++.++.||+++++...+.+|++.      .|..+||+|||++++|++|+++|.||.||+++.+|.+|+|.+||+++..
T Consensus       410 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~  489 (573)
T PRK05605        410 ETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLRE  489 (573)
T ss_pred             ccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHh
Confidence            3456678999999999999999976      3556799999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |+.|.+++++++++...++.+.+++++.++...+.+++.+++++.+.....+     ..+.+.+.+|++.+||+
T Consensus       490 ~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p-----~~i~~~~~iP~t~~GKi  558 (573)
T PRK05605        490 HPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVP-----RRFYHVDELPRDQLGKV  558 (573)
T ss_pred             CcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCC-----cEEEEeccCCCCCcccc
Confidence            9999999999999988888898999888776677788888888887765444     33445677999998988

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.73  E-value=4.2e-17  Score=164.22  Aligned_cols=143  Identities=22%  Similarity=0.215  Sum_probs=113.9

Q ss_pred             ccCCCCCCceEEEEec---Cchhhhhhc-------cc---ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHh
Q psy13046         11 NQHSSRQKKAIHFRHF---DSFLLFVEL-------CL---LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE   77 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~---~~~~~y~~~-------~~---~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~   77 (365)
                      .+++.++.||++++++   ..+.+|+++       ||   ..+||+|||++++|+||+++|.||.||+||++|.+|+|.+
T Consensus       431 ~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~e  510 (629)
T PRK10524        431 EPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTRE  510 (629)
T ss_pred             CCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHH
Confidence            4566788999999987   345555543       22   3579999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC--------HHHHHHHHHhhhhhcccceEEEeeeEEeeec
Q psy13046         78 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN--------ADDIRTFCKGKVKRKISCIFIIIVRISCECI  149 (365)
Q Consensus        78 ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~--------~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~  149 (365)
                      ||++|.+||.|.+++|++++++..++.+.++++++++...+        .+++.+++++.+..+..+     ..+.+.+.
T Consensus       511 IE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P-----~~i~~v~~  585 (629)
T PRK10524        511 IEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARP-----ARVWFVSA  585 (629)
T ss_pred             HHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCC-----CEEEEcCC
Confidence            99999999999999999999988888999999987653321        234555555555444333     44556778


Q ss_pred             cccccCcee
Q psy13046        150 LLKYRSAST  158 (365)
Q Consensus       150 l~~~~~gk~  158 (365)
                      +|++.+||+
T Consensus       586 lP~T~sGKi  594 (629)
T PRK10524        586 LPKTRSGKL  594 (629)
T ss_pred             CCCCCCcch
Confidence            999999998

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.73  E-value=4.6e-17  Score=170.91  Aligned_cols=140  Identities=12%  Similarity=0.032  Sum_probs=114.0

Q ss_pred             cCCCCCCceEEEEecCchh---hhhhccc--ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCC
Q psy13046         12 QHSSRQKKAIHFRHFDSFL---LFVELCL--LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP   86 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~---~y~~~~~--~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~   86 (365)
                      ..+.++.|||+++++..+.   .....+|  ..+||+|||++++|+||+++|.||.||+||++|.+|+|.|||.+|.+||
T Consensus       803 ~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp  882 (994)
T PRK07868        803 RAEVNEVGVLLARARGPIDPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIG  882 (994)
T ss_pred             EcCCCCceEEEEecCCCCChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCC
Confidence            3567889999998863210   0000123  3799999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         87 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        87 ~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .|.+++|++++++. ++.++++|+++++...+.++|.+++++ ++.++.+     ..+.+.+.+|++.+||+
T Consensus       883 ~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP-----~~i~~v~~lP~T~sGKi  947 (994)
T PRK07868        883 GVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGP-----DIVHVVPEIPLSATYRP  947 (994)
T ss_pred             CeeEEEEEeecCCC-CceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCC-----eEEEEeCCCCCCccccE
Confidence            99999999999875 577888888887766778889998875 5555544     45567789999999998

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.73  E-value=6.3e-17  Score=160.82  Aligned_cols=143  Identities=24%  Similarity=0.252  Sum_probs=124.3

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      ..++.++.|+++++++..+.+|++..      +..+||+|||++++|++|++++.||.||+|+.+|.+|+|.+||+++.+
T Consensus       396 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~  475 (563)
T PRK06710        396 EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYE  475 (563)
T ss_pred             ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHh
Confidence            45667789999999999999999762      557899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |+.|.++++++++++..++.+.++++..++...+.+++.+++++.++.+..+     ..+.+.+.+|++.+||+
T Consensus       476 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~~~~v~~iP~t~~GKi  544 (563)
T PRK06710        476 HEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVP-----KVYEFRDELPKTTVGKI  544 (563)
T ss_pred             CcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCC-----cEEEEcccCCCCccchh
Confidence            9999999999999988888888999888776667788888888877765544     33445678999988888

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.73  E-value=7.2e-17  Score=159.15  Aligned_cols=143  Identities=27%  Similarity=0.278  Sum_probs=123.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +.++.++.||++++++..+.+|++..      |..+||+|||++++++||++++.||.||+++++|.+|+|.+||..+.+
T Consensus       359 ~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~  438 (528)
T PRK07470        359 RELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLT  438 (528)
T ss_pred             CCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHh
Confidence            44567789999999999999999773      457899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++.|.++++++++++..++...++++..++...+.+++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       439 ~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~-----~~~~~~~iP~t~~GKi  507 (528)
T PRK07470        439 HPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPK-----RFFFWDALPKSGYGKI  507 (528)
T ss_pred             CCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCc-----EEEEeccCCCCCcccc
Confidence            99999999999999877888888888776655677889999998887665553     3445678999999988

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.73  E-value=5.9e-17  Score=158.72  Aligned_cols=143  Identities=25%  Similarity=0.315  Sum_probs=120.2

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c---ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L---LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF   81 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~---~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~   81 (365)
                      ++++.++.||+++++++.+.+|++..      +   ..+|++|||++++|+||+++|.||.|++|+.+|.+|+|.+||++
T Consensus       341 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~  420 (501)
T PRK13390        341 NELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENA  420 (501)
T ss_pred             CCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHH
Confidence            44567889999999999999998763      1   25799999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC---HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         82 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        82 l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~---~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +.+||.|.++++++++++..++.+.+++++.++.+..   .+++.+++++.+..++.+     ..+.+.+.+|++.+||+
T Consensus       421 l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~~~~~~~iP~t~~GKi  495 (501)
T PRK13390        421 LTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAP-----RSVEFVDELPRTPTGKL  495 (501)
T ss_pred             HHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCC-----cEEEEeccCCCCCccce
Confidence            9999999999999999988888888888877653322   346777777777666555     34446678999999998

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.72  E-value=7.8e-17  Score=158.49  Aligned_cols=143  Identities=25%  Similarity=0.332  Sum_probs=123.2

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc---cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCC
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC---LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPN   87 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~---~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~   87 (365)
                      +.++.++.||++++++..+.+|.+..   +..+||+|||++++|++|++++.||.||+|+++|.+|+|.+||.++.+||.
T Consensus       364 ~~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~  443 (516)
T PRK13383        364 RPVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPA  443 (516)
T ss_pred             CCCCCCCceEEEEecCcccccccCCchhheecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCC
Confidence            44566788999999999999998663   356899999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         88 VLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        88 V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.+++++++++...++.+.++|++.++...+.+++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       444 v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p-----~~i~~v~~iP~t~~gKi  509 (516)
T PRK13383        444 VADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQP-----RDINIVSSIPRNPTGKV  509 (516)
T ss_pred             eeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCC-----cEEEEeCCCCCCCCCcC
Confidence            9999999999988888898999888765566788888888887665544     34445678999988888

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.72  E-value=9.5e-17  Score=158.75  Aligned_cols=142  Identities=18%  Similarity=0.097  Sum_probs=119.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      .+++.++.|||++++++.+.+|+++.      | ..+||+|||++++|++|++++.||.+|+++++|.+|+|.+||.++.
T Consensus       370 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~  449 (540)
T PRK06164        370 ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE  449 (540)
T ss_pred             cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH
Confidence            44677889999999999999999873      3 4689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc---ee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA---ST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g---k~  158 (365)
                      +|+.|.++++++++.. .++.+.++++..++...+.+++.+++++.++.+..+     ..+.+.+.+|++.+|   |+
T Consensus       450 ~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~~~~~P~t~~g~~~Ki  521 (540)
T PRK06164        450 ALPGVAAAQVVGATRD-GKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVP-----ARVQVVEAFPVTESANGAKI  521 (540)
T ss_pred             hCCCceeEEEEecCCC-CceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCC-----cEEEEecCCCCCCCCccccc
Confidence            9999999999999843 456777888877765667788999998887765544     334566778888766   66

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.72  E-value=1e-16  Score=157.62  Aligned_cols=143  Identities=22%  Similarity=0.238  Sum_probs=122.5

Q ss_pred             ccCCCCCCceEEEEe---cCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046         11 NQHSSRQKKAIHFRH---FDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE   80 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~---~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~   80 (365)
                      +.++.++.||+++++   +..+.+|++..      | ..+||+|||++++|+||++++.||.||+|+.+|.+|+|.+||.
T Consensus       359 ~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~  438 (517)
T PRK08008        359 RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELEN  438 (517)
T ss_pred             CCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHH
Confidence            445667889999997   58899998773      3 4789999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         81 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        81 ~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++.+|+.|.++++++++++..++.+.++++++++...+.+++.+++++.++.+..+     ....+.+.+|++.+||+
T Consensus       439 ~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~~~~v~~iP~t~~gK~  511 (517)
T PRK08008        439 IIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVP-----SYLEIRKDLPRNCSGKI  511 (517)
T ss_pred             HHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCC-----cEEEEeccCCCCCccce
Confidence            99999999999999999987788888999988766667788999998877665544     33445678999988887

>KOG1179|consensus

Probab=99.72  E-value=4e-17  Score=152.01  Aligned_cols=182  Identities=12%  Similarity=0.042  Sum_probs=135.5

Q ss_pred             cchhccCCCCccccccCCcccccccccccccccccccceeeE-------eecCeeEE--------EEEcccceeccCCce
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLH-------IFEHLFLE--------LVLYIVNSVLYNFKW  243 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~-------~~~~~~~~--------i~d~~~~~~~~~~~~  243 (365)
                      .+...++.-..+... ||+||... .+.+.+.   ..+.+|+       ..|---+|        |.|++|-..+.+.++
T Consensus       373 ~~Fv~RFg~~~IgE~-YgaTEgn~-~~~N~d~---~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GE  447 (649)
T KOG1179|consen  373 QQFVKRFGIIKIGEF-YGATEGNS-NLVNYDG---RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGE  447 (649)
T ss_pred             HHHHHHcCCCeEEEE-eccccCcc-eeeeecC---ccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCC
Confidence            455566777777888 99999743 2222222   1222222       11211111        233344444555566


Q ss_pred             eeEE---eecCcc---cccccCCCccccccc-----C-CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHH
Q psy13046        244 INQV---SSQTMA---MKSKRGLPARVKAPD-----R-KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE  311 (365)
Q Consensus       244 ~gei---~~g~~~---~~gY~~~~~~~~~~~-----~-~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE  311 (365)
                      .|.+   +.-..-   |.||.++.++|++..     . .|-||.|||+-..|+.|++||.+|..|.+...|+||+..|||
T Consensus       448 pGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe  527 (649)
T KOG1179|consen  448 PGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVE  527 (649)
T ss_pred             CceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHH
Confidence            6664   333333   899999888776554     2 366999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCeeEEEEEeecCCCC-CcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        312 EFIQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       312 ~~l~~~~~v~~~~v~~~~~~~~-g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      .+|.....+.|+.|+|+.-+.. |..-+|.|+++++.+.+.+.+-+++++.||+|
T Consensus       528 ~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~Y  582 (649)
T KOG1179|consen  528 DVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSY  582 (649)
T ss_pred             HHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccc
Confidence            9999999999999999987765 77889999999988899999999999999998

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.72  E-value=8e-17  Score=159.28  Aligned_cols=137  Identities=20%  Similarity=0.199  Sum_probs=119.9

Q ss_pred             CCceEEEEecCchhhhhhcc---cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEEE
Q psy13046         17 QKKAIHFRHFDSFLLFVELC---LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYA   93 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~---~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v   93 (365)
                      +.||++++++..+.+|+++.   +..+||+|||++++|+||++++.||.+|+|+.+|.+|+|.+||+++..+|.|.++++
T Consensus       383 ~~Gei~v~g~~~~~gy~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v  462 (539)
T PRK07008        383 AFGDLQVRGPWVIDRYFRGDASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAAC  462 (539)
T ss_pred             cceEEEEeCCccchhhcCChhhhhcCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEE
Confidence            46999999999999999773   457899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         94 YGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        94 ~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++++...++.+.++|+..++...+.+++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       463 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~v~~lP~t~sgKi  522 (539)
T PRK07008        463 IACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIP-----DDVVFVDAIPHTATGKL  522 (539)
T ss_pred             EecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccccCC-----eEEEEecCCCCCCccce
Confidence            9999987778888888877665567788999999888766555     34456678999999988

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.72  E-value=1.6e-16  Score=157.71  Aligned_cols=143  Identities=30%  Similarity=0.453  Sum_probs=123.5

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ..++.++.||++++++..+.+|++..      + ..+||+|||++++++||++++.||.+|+++++|.+|+|.+||+.+.
T Consensus       392 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~  471 (558)
T PRK12583        392 ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF  471 (558)
T ss_pred             CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH
Confidence            44567789999999999999999773      3 6789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++.|.++++++++++..++.+.++++..++...+..++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       472 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~-----~i~~v~~lP~t~sGK~  541 (558)
T PRK12583        472 THPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPR-----YFRFVDEFPMTVTGKV  541 (558)
T ss_pred             hCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCc-----EEEEeccCCCCCCCCc
Confidence            999999999999999877888889988887666667888888888877654442     3445678999998888

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.72  E-value=1.4e-16  Score=157.74  Aligned_cols=143  Identities=27%  Similarity=0.338  Sum_probs=121.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc-----cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC-----LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~-----~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      +.++.++.||++++++..+.+|++..     ...+||+|||+++++++|++++.||.||+++.+|.+|+|.+||.++.+|
T Consensus       385 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~  464 (547)
T PRK13295        385 APLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRH  464 (547)
T ss_pred             CCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence            34566789999999999999998763     1357999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         86 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        86 ~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +.|.+++|++++++..++.+++++++.++...+.+++.+++++ .++.++.+     ..+.+.+.+|++.+||+
T Consensus       465 ~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P-----~~i~~v~~lP~t~sgK~  533 (547)
T PRK13295        465 PAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIP-----ERLVVRDALPRTPSGKI  533 (547)
T ss_pred             CCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCC-----cEEEEeccCCCCCCccc
Confidence            9999999999999888888999998887655666788888875 45554444     33456678999998988

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.72  E-value=1.3e-16  Score=157.68  Aligned_cols=143  Identities=27%  Similarity=0.308  Sum_probs=121.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhccc-----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELCL-----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~~-----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      +.++.++.||++++++..+.+|++...     ..+||+|||++++|++|++++.||.+|+|+.+|.+|+|.+||.++.+|
T Consensus       383 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~  462 (538)
T TIGR03208       383 AKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQH  462 (538)
T ss_pred             CCCcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcC
Confidence            345667899999999999999997642     468999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         86 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        86 ~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +.|.+++|+++++...++.+.++++..++...+..++.++++. .+..+..+     ..+.+.+.+|++.+||+
T Consensus       463 ~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P-----~~i~~v~~iP~t~~gKv  531 (538)
T TIGR03208       463 PAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIP-----ERLEVVDALPATPAGKI  531 (538)
T ss_pred             cceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCC-----cEEEEeccCCCCCcccc
Confidence            9999999999998878888999998887666777888888874 45555444     33446678999998888

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=4.2e-17  Score=150.80  Aligned_cols=87  Identities=11%  Similarity=0.038  Sum_probs=80.5

Q ss_pred             CCCeeecCceEEE-ccCCcEEEEeecCceEEeCc---eEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcC
Q psy13046        270 KKCSQRPRYQFVL-REDGYGQVVGRIKDMIIRGG---ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  345 (365)
Q Consensus       270 ~~g~~~TGD~~~~-~~~G~l~i~GR~~d~i~~~G---~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  345 (365)
                      .+|||+|||+|++ |+||+|+|+||.|     +|   +||+|. ||++|.+||+|.+|+|++++++..|+.++|||++..
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            3899999999998 7999999999998     88   899999 999999999999999999999999999999999874


Q ss_pred             CCCCCHHHHHHHHHcccCC
Q psy13046        346 NAKLNADDIRTFCKGKVSK  364 (365)
Q Consensus       346 ~~~~~~~~l~~~~~~~l~~  364 (365)
                        ..+.++++++|+++|++
T Consensus       281 --~~~~~el~~~l~~~L~~  297 (365)
T PRK09188        281 --PADEKSLRARLAGAKPP  297 (365)
T ss_pred             --CCCHHHHHHHHHhhchh
Confidence              46778999999999874

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.72  E-value=6.5e-17  Score=159.83  Aligned_cols=137  Identities=11%  Similarity=0.053  Sum_probs=108.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc----c----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC----L----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI   82 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~----~----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l   82 (365)
                      .+++.++.||++++++..|.+|++..    +    ..+||+|||++++|++|+++|.||.||+||++|.+|+|.|||.+|
T Consensus       373 ~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l  452 (539)
T PRK06334        373 VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESIL  452 (539)
T ss_pred             ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHH
Confidence            45677889999999999999999763    1    257999999999999999999999999999999999999999999


Q ss_pred             hcCCCcce------EEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccC
Q psy13046         83 QTHPNVLE------AYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRS  155 (365)
Q Consensus        83 ~~~~~V~~------~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~  155 (365)
                      .+||.|.+      ++++++|..  ...++++++..    .+.+++.+++++. +..++.+     ..+.+.+.+|++.+
T Consensus       453 ~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P-----~~i~~v~~lP~t~~  521 (539)
T PRK06334        453 MEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTFP----TSISEVNDILKNSKTSSILKI-----SYHHQVESIPMLGT  521 (539)
T ss_pred             HHccCCccccccCceEEEcCCCC--ceEEEEEEecc----CChHHHHHHHHhcCCcccccc-----hheeeecccccccC
Confidence            99999987      677887753  22344444321    2456777777764 3333333     34556788999999


Q ss_pred             cee
Q psy13046        156 AST  158 (365)
Q Consensus       156 gk~  158 (365)
                      ||+
T Consensus       522 GKi  524 (539)
T PRK06334        522 GKP  524 (539)
T ss_pred             Ccc
Confidence            998

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.72  E-value=1e-16  Score=158.38  Aligned_cols=141  Identities=29%  Similarity=0.327  Sum_probs=121.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|+++++++..|.+|++..      | .++||+|||++++|++|++++.||.+|+++++|.+++|.+||..+.
T Consensus       373 ~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~  452 (536)
T PRK10946        373 NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL  452 (536)
T ss_pred             CCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHH
Confidence            45677889999999999999999763      3 5689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++++++++...++.+++++++++.  .+.+++.+++++. +..+..+     ..+.+.+.+|++.+||+
T Consensus       453 ~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~~~l~~~~~~~~l~~~~~P-----~~~~~~~~iP~t~~GKv  521 (536)
T PRK10946        453 RHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKAVQLRRFLREQGIAEFKLP-----DRVECVDSLPLTAVGKV  521 (536)
T ss_pred             hCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCHHHHHHHHHhCCccccccC-----cEEEEeccCCCCCCCcc
Confidence            9999999999999998888888888887654  6677888888764 5554444     34555677899998888

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.71  E-value=1e-16  Score=159.52  Aligned_cols=142  Identities=21%  Similarity=0.241  Sum_probs=122.5

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +.++.++.||++++++.++.+|+++.      |..+||+|||++++++||+++|.||.+|+++.+|.+++|.+||+++.+
T Consensus       407 ~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~  486 (567)
T PRK06178        407 ELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQ  486 (567)
T ss_pred             CcCCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHh
Confidence            44567789999999999999999773      457899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++.|.++++++++++..++.+.++++..++...+.+++.+++++.+..+..+.      +.+.+.+|++.+||+
T Consensus       487 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~------i~~v~~iP~t~~GKv  554 (567)
T PRK06178        487 HPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE------IRIVDALPMTATGKV  554 (567)
T ss_pred             CCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce------EEEeccCCCCCccce
Confidence            99999999999998877888888888877666677889998888776555442      334577999988888

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.71  E-value=2e-16  Score=155.60  Aligned_cols=143  Identities=29%  Similarity=0.327  Sum_probs=123.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +.++.++.||++++++..+.+|+...      |..+||+|||++++++||.+++.||.||+++.+|.+|+|.+||..+.+
T Consensus       360 ~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~  439 (523)
T PRK08316        360 NDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYT  439 (523)
T ss_pred             CCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHh
Confidence            44566789999999999999999762      568999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++.|.++++++++++..++.++++++..++.....+.+.+++++.++.+..+     ..+.+.+.+|++.+||+
T Consensus       440 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p-----~~i~~v~~~p~t~~gKi  508 (523)
T PRK08316        440 HPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVP-----KRVIFVDELPRNPSGKI  508 (523)
T ss_pred             CCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCC-----cEEEEecCCCCCCccce
Confidence            9999999999999988888899999888765566788888888877666444     33445577899988888

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.70  E-value=8.9e-17  Score=162.44  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=85.3

Q ss_pred             CCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEE-CCEEechHhHHHHHhcCCC
Q psy13046         15 SRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPN   87 (365)
Q Consensus        15 ~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~-~G~~v~p~~ie~~l~~~~~   87 (365)
                      .++.|||+++|+.+|.+|+++.      |.+|||+|||+|++|+||+++|+||+||+|+. +|++|+|.+||+++.+||.
T Consensus       462 ~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~  541 (660)
T PLN02861        462 DVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPL  541 (660)
T ss_pred             CCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCC
Confidence            3458999999999999999873      55799999999999999999999999999995 8999999999999999999


Q ss_pred             cceEEEEEeeCCCCCceEEEEEEEc
Q psy13046         88 VLEAYAYGVPDERMGEEVGISIKLK  112 (365)
Q Consensus        88 V~~~~v~~vp~~~~~~~~~~~v~~~  112 (365)
                      |.+++|+|.+.   ++.+.++|+++
T Consensus       542 V~~a~V~G~~~---~~~~~A~vv~~  563 (660)
T PLN02861        542 IASIWVYGNSF---ESFLVAVVVPD  563 (660)
T ss_pred             eeEEEEEecCC---cceeEEEEEcC
Confidence            99999999873   45677888765

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.70  E-value=2.3e-16  Score=156.18  Aligned_cols=143  Identities=22%  Similarity=0.262  Sum_probs=122.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE   80 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~   80 (365)
                      +.++.++.||++++++..+.+|++..      |    ..+||+|||+++++++|++++.||.||+++++|.+|+|.+||+
T Consensus       377 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~  456 (546)
T PRK08314        377 EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVEN  456 (546)
T ss_pred             cCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHH
Confidence            45567789999999999999999763      1    1359999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCC--CCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         81 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        81 ~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~--~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++.++|.|.+++|+++++...++.++++++.+++.  ..+.+++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       457 ~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~~~~v~~iP~t~~GKv  531 (546)
T PRK08314        457 LLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYP-----RIVEFVDSLPKSGSGKI  531 (546)
T ss_pred             HHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCC-----cEEEEecCCCCCCccce
Confidence            99999999999999999988888899999887653  345578888888887776655     34446678999999998

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.70  E-value=1.9e-16  Score=161.06  Aligned_cols=147  Identities=19%  Similarity=0.261  Sum_probs=115.6

Q ss_pred             ccCCCCC--CceEEEEecC--chhhhh-----hcccc-------cccEecCceEEEecCCcEEEEeecCcEEEECCEEec
Q psy13046         11 NQHSSRQ--KKAIHFRHFD--SFLLFV-----ELCLL-------LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIY   74 (365)
Q Consensus        11 ~~~~~~~--~g~~~~~~~~--~~~~y~-----~~~~~-------~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~   74 (365)
                      ++++.++  .||+++++.-  ...+|+     ..||.       ..||+|||++++|+||+++|.||.||+||++|.+|+
T Consensus       544 ~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~  623 (728)
T PLN03052        544 NPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVS  623 (728)
T ss_pred             CCCCCCCCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeC
Confidence            4455553  6999996531  111122     22332       238999999999999999999999999999999999


Q ss_pred             hHhHHHHHh-cCCCcceEEEEEeeCCCCC-ceEEEEEEEc--CCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeecc
Q psy13046         75 PKEIEEFIQ-THPNVLEAYAYGVPDERMG-EEVGISIKLK--ENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECIL  150 (365)
Q Consensus        75 p~~ie~~l~-~~~~V~~~~v~~vp~~~~~-~~~~~~v~~~--~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l  150 (365)
                      |.|||+++. .||.|.+++|++++++..+ +.++++|+++  ++...+.++|.+++++.+...+..+..+ ..+.+.+.+
T Consensus       624 ~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p-~~i~~v~~l  702 (728)
T PLN03052        624 SVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKV-SAVVIVPSF  702 (728)
T ss_pred             HHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCC-CEEEEcCCC
Confidence            999999995 8999999999999998766 7888999987  5555667888888887777766665555 567778899


Q ss_pred             ccccCcee
Q psy13046        151 LKYRSAST  158 (365)
Q Consensus       151 ~~~~~gk~  158 (365)
                      |++.+||+
T Consensus       703 P~T~sGKi  710 (728)
T PLN03052        703 PRTASNKV  710 (728)
T ss_pred             CCCCchHH
Confidence            99999998

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.70  E-value=2.8e-16  Score=154.82  Aligned_cols=142  Identities=24%  Similarity=0.290  Sum_probs=123.2

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      .++.++.|+++++++..+.+|++..      +..+||+|||++++++||+++|.||.+++++++|.+++|.+||.++.+|
T Consensus       359 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~  438 (524)
T PRK06188        359 EVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEH  438 (524)
T ss_pred             CCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhC
Confidence            3456788999999999999998763      4678999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         86 PNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        86 ~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +.|.++++++++++..++.+.+++++.+......+++.+++++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       439 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-----~i~~v~~~P~t~~gKi  506 (524)
T PRK06188        439 PAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPK-----QVDFVDSLPLTALGKP  506 (524)
T ss_pred             CCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCc-----EEEEecCCCCCccccc
Confidence            9999999999998878888889888887656667888888888876665553     3445678999998888

>PRK08315 AMP-binding domain protein; Validated

Probab=99.70  E-value=4.1e-16  Score=154.84  Aligned_cols=143  Identities=36%  Similarity=0.524  Sum_probs=123.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|||+++++..+.+|++..      | ..+||+|||++++|+||+++|.||.+|+++.+|.+++|.+||+++.
T Consensus       391 ~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~  470 (559)
T PRK08315        391 ETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY  470 (559)
T ss_pred             CcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHH
Confidence            45667889999999999999999763      3 5789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++.|.++++++++++..++.++++|+..++...+.+++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       471 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~v~~lP~t~~GK~  540 (559)
T PRK08315        471 THPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPR-----YIRFVDEFPMTVTGKI  540 (559)
T ss_pred             hCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCc-----EEEEcccCCCCCCCce
Confidence            999999999999998877788888888776655677889999988887665553     3445678999998988

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.70  E-value=3e-16  Score=155.21  Aligned_cols=143  Identities=29%  Similarity=0.380  Sum_probs=122.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhc------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVEL------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +.++.++.||+.++++..+.+|++.      .|..+||+|||+++++++|+++|.||.||+++.+|.+|+|.+||+++.+
T Consensus       386 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~  465 (541)
T TIGR03205       386 KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYE  465 (541)
T ss_pred             ccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHh
Confidence            3456678999999999999999976      2457899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCC-CCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENA-KLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~-~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |+.|.++++++++++..++.+.+++++.++. ..+.+++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       466 ~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~~~~iP~t~~gK~  535 (541)
T TIGR03205       466 HPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELP-----VAVEFVDELPRTPVGKL  535 (541)
T ss_pred             CCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCC-----cEEEEeccCCCCcccce
Confidence            9999999999999887788888888887653 356778888888887765544     34445678999988888

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.70  E-value=1.4e-16  Score=159.83  Aligned_cols=144  Identities=19%  Similarity=0.178  Sum_probs=114.5

Q ss_pred             eccCCCCCCceEEEEecCchhhhhhcc------cc-------------------cccEecCceEEEecCCcEEEEeecCc
Q psy13046         10 ANQHSSRQKKAIHFRHFDSFLLFVELC------LL-------------------LFPFLSRDQFVLREDGYGQVVGRIKD   64 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~------~~-------------------~~~~~tgDl~~~~~~g~~~i~GR~~d   64 (365)
                      .+.++.++.|||+++++..+.+|+++.      |.                   .+||+|||+++++ ||+++|.||.||
T Consensus       421 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d  499 (612)
T PRK12476        421 GAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIAD  499 (612)
T ss_pred             CcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCc
Confidence            345667889999999999999999763      21                   2599999999985 999999999999


Q ss_pred             EEEECCEEechHhHHHHHh-cCCCcce--EEEEEeeCCCCCceEEEEEEEcCCC-CCCHHHHHHHHHhhhhhcccceEEE
Q psy13046         65 MIIRGGENIYPKEIEEFIQ-THPNVLE--AYAYGVPDERMGEEVGISIKLKENA-KLNADDIRTFCKGKVKRKISCIFII  140 (365)
Q Consensus        65 ~i~~~G~~v~p~~ie~~l~-~~~~V~~--~~v~~vp~~~~~~~~~~~v~~~~~~-~~~~~~L~~~l~~~l~~~~~~~~~~  140 (365)
                      +||++|++|+|.+||+++. .||.|.+  ++++++|++. ++.++++++++++. ..+.+++.+++++.+.......   
T Consensus       500 ~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~---  575 (612)
T PRK12476        500 LIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLA---  575 (612)
T ss_pred             EEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCc---
Confidence            9999999999999999998 4899998  7788888876 78888888887653 3566788888888876433211   


Q ss_pred             eeeEEeee--ccccccCcee
Q psy13046        141 IVRISCEC--ILLKYRSAST  158 (365)
Q Consensus       141 ~~~~~~~~--~l~~~~~gk~  158 (365)
                      ...+.+.+  .+|++.+||+
T Consensus       576 p~~v~~v~~~~lP~t~~GKi  595 (612)
T PRK12476        576 VADVRLVPAGAIPRTTSGKL  595 (612)
T ss_pred             ceEEEEECCCCcCcCCchHH
Confidence            12333433  5999999988

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.69  E-value=2.1e-16  Score=161.45  Aligned_cols=135  Identities=14%  Similarity=0.118  Sum_probs=112.1

Q ss_pred             CCCceEEEEecCchhhhhhc----------------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         16 RQKKAIHFRHFDSFLLFVEL----------------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~----------------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      ++.||++++|+..|.+|++.                .+..+||+|||++++|+||+++|.||.||+|+++|++|+|.+||
T Consensus       551 ~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE  630 (718)
T PRK08043        551 EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVE  630 (718)
T ss_pred             CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHH
Confidence            45799999999999999962                12358999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .++.+|+.+.++++++++++..++.+++++.   +...+.+++.+++++. ++.+.-+     ..+.+.+.+|++.+||+
T Consensus       631 ~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~~~~l~~~~~~~~l~~~~vP-----~~i~~v~~lP~t~~GKi  702 (718)
T PRK08043        631 QLALGVSPDKQHATAIKSDASKGEALVLFTT---DSELTREKLQQYAREHGVPELAVP-----RDIRYLKQLPLLGSGKP  702 (718)
T ss_pred             HHHHhCCccceEEEEEccCCCCCceEEEEEc---CcccCHHHHHHHHHhcCCCcccCC-----ceEEEecccCcCCCCCc
Confidence            9999999888888999998877887766543   3345667888888876 6655544     34556678999999998

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.69  E-value=9e-17  Score=162.42  Aligned_cols=99  Identities=16%  Similarity=0.113  Sum_probs=87.5

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEE-ECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|||+++|+.+|.+|+++.      |..|||+|||+|++|+||+++|+||.||+|| .+|+||+|.+||+++.
T Consensus       461 ~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~  540 (666)
T PLN02614        461 DALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG  540 (666)
T ss_pred             ccCCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHh
Confidence            34566789999999999999999773      5679999999999999999999999999999 5899999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLK  112 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~  112 (365)
                      +||.|.+++|+|.+.   ...+.|+|+++
T Consensus       541 ~~p~V~~~~V~g~~~---~~~l~alvv~~  566 (666)
T PLN02614        541 EVQAVDSVWVYGNSF---ESFLVAIANPN  566 (666)
T ss_pred             cCCCeeEEEEEecCC---cceEEEEEeCC
Confidence            999999999999863   23577777764

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.69  E-value=3.3e-16  Score=152.31  Aligned_cols=134  Identities=24%  Similarity=0.281  Sum_probs=115.9

Q ss_pred             CceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeec-CcEEEECCEEechHhHHHHHhcCCCcc
Q psy13046         18 KKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVL   89 (365)
Q Consensus        18 ~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~-~d~i~~~G~~v~p~~ie~~l~~~~~V~   89 (365)
                      .|||+++++..+.+|++..      | ..+||+|||++++|+||++++.||. |++++.+|.+|+|.+||+++.+++.|+
T Consensus       321 ~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~  400 (471)
T PRK07787        321 VGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVR  400 (471)
T ss_pred             ceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcc
Confidence            7999999999999999762      3 4789999999999999999999996 899999999999999999999999999


Q ss_pred             eEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         90 EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        90 ~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++|++.++...++.+.++++...  ..+.+++.+++++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       401 ~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~l~~~l~~~~~P~-----~i~~~~~iP~~~~GKi  462 (471)
T PRK07787        401 EAAVVGVPDDDLGQRIVAYVVGAD--DVAADELIDFVAQQLSVHKRPR-----EVRFVDALPRNAMGKV  462 (471)
T ss_pred             eEEEEcccccccCeEEEEEEEeCC--CCCHHHHHHHHHhhcccccCCc-----EEEEeccCCCCCCccc
Confidence            999999998877888888888733  3567888999988887765553     3445677999988888

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.69  E-value=4.1e-16  Score=154.97  Aligned_cols=142  Identities=27%  Similarity=0.390  Sum_probs=120.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ..++.++.||++++++..+.+|+++.      | ..+||+|||++++|++|+++|.||.||+++.+|.+|+|.+||..+.
T Consensus       405 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~  484 (562)
T PRK12492        405 NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVM  484 (562)
T ss_pred             CCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHH
Confidence            34566788999999999999999763      3 4689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++++++++...++.+.++++..+. ..+.+++.+++.+.+..+..+     ..+.+.+.+|++.+||+
T Consensus       485 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P-----~~i~~~~~~P~t~~GK~  553 (562)
T PRK12492        485 AHPKVANCAAIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCKENFTGYKVP-----KHIVLRDSLPMTPVGKI  553 (562)
T ss_pred             hCCCeeEEEEEeccCCCCCceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCC-----cEEEEeccCCCCCCCce
Confidence            9999999999999988778888888776543 345678888888887666554     33446678999988888

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.69  E-value=4.4e-16  Score=152.57  Aligned_cols=143  Identities=29%  Similarity=0.353  Sum_probs=123.0

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ++++.++.||++++++..+.+|+++.      | ..+||+|||+++++++|++++.||.||+|+.+|.+|+|.+||.++.
T Consensus       341 ~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~  420 (504)
T PRK07514        341 AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEID  420 (504)
T ss_pred             CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHH
Confidence            44567789999999999999999763      3 3789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++.|.++++++++++..++.+.++++..+....+.+++.+.+++.+.....+.     .+...+.+|++.+||+
T Consensus       421 ~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-----~i~~v~~~p~t~~gK~  490 (504)
T PRK07514        421 ELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPK-----RVFFVDELPRNTMGKV  490 (504)
T ss_pred             hCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCc-----EEEEeccCCCCCCcce
Confidence            999999999999998877888888888877666677889999988877665543     3345567899988888

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.69  E-value=4.6e-16  Score=154.49  Aligned_cols=142  Identities=32%  Similarity=0.434  Sum_probs=121.0

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..      | ..+||+|||++++++||++++.||.+|+++++|.+|+|.+||+++.
T Consensus       399 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~  478 (557)
T PRK07059        399 NDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVA  478 (557)
T ss_pred             CCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHH
Confidence            44567788999999999999999762      3 5799999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +|+.|.+++++++++...++.+.++++.... ..+.+++.+.+.+.+.....+     ..+.+.+.+|++.+||+
T Consensus       479 ~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~-~~~~~~l~~~~~~~l~~~~~P-----~~i~~v~~~P~t~~GK~  547 (557)
T PRK07059        479 SHPGVLEVAAVGVPDEHSGEAVKLFVVKKDP-ALTEEDVKAFCKERLTNYKRP-----KFVEFRTELPKTNVGKI  547 (557)
T ss_pred             hCCceeEEEEEecccCCCCeeEEEEEEeCCC-CCCHHHHHHHHHHhcccccCC-----cEEEEeccCCCCcccce
Confidence            9999999999999998778888888776542 355678888888877665544     34456778999999988

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.69  E-value=4.6e-16  Score=151.63  Aligned_cols=141  Identities=28%  Similarity=0.341  Sum_probs=119.5

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      ++.+.++.||++++++..+.+|++..      |..+||+|||++++++||++++.||.+|+++.+|.+|+|.+||.++.+
T Consensus       325 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~  404 (483)
T PRK03640        325 VVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLS  404 (483)
T ss_pred             CcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHh
Confidence            35667789999999999999999774      467899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++.|.++++++.+++..+....++++...  ..+.+++.+++++.+..+..+.     .+...+.+|++.+||+
T Consensus       405 ~~~v~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~-----~i~~~~~iP~t~~gK~  471 (483)
T PRK03640        405 HPGVAEAGVVGVPDDKWGQVPVAFVVKSG--EVTEEELRHFCEEKLAKYKVPK-----RFYFVEELPRNASGKL  471 (483)
T ss_pred             CCCeeEEEEEeCCCcccCCceEEEEEeCC--CCCHHHHHHHHHHhccCCCCCc-----EEEEeCCCCCCCccce
Confidence            99999999999988777777777676443  4667888888888777665443     3445677999988888

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.69  E-value=2.8e-16  Score=150.65  Aligned_cols=163  Identities=19%  Similarity=0.187  Sum_probs=110.1

Q ss_pred             hccCCCCccccccCCcccccc-cccccccccccccceeeEeec--CeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHP-FLEVVQSFECRRYQVVLHIFE--HLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~-~~~~~~~~~~~~~~~~G~~~~--~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      +....+..+.+. ||+||++. ....    .|.. ...|.+++  ++.++|+|++++...+ .+..||+ +++.      
T Consensus       215 i~~~~g~~v~~~-YG~tE~~~~~~~~----~~~~-~~~g~~~~~~~~~~eivd~~~g~~v~-~Ge~Gelvvt~~------  281 (422)
T TIGR02155       215 IEARLGMKATDI-YGLSEVIGPGVAM----ECVE-TQDGLHIWEDHFYPEIIDPHTGEVLP-DGEEGELVFTTL------  281 (422)
T ss_pred             HHHHhCCceEec-ccchhhcCCceee----cccc-cCCCceEecCeeEEEEECCCCCCCCC-CCCeeEEEEecC------
Confidence            334446778888 99999842 2221    1100 01233443  6778899965443333 3567887 6542      


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccC-C-----cEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLRED-G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  331 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~-G-----~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  331 (365)
                            +..+|. .+||+|||+++++++ |     .++|.||.||+||++|.+|+|.+||++|.+||+|...+.+.....
T Consensus       282 ------~~~~~p-~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~  354 (422)
T TIGR02155       282 ------TKEALP-VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRN  354 (422)
T ss_pred             ------Cccccc-eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcC
Confidence                  233443 689999999999876 4     478999999999999999999999999999999985565555555


Q ss_pred             CCCcEEEEEEEEcCCCCC-C--------HHHHHHHHHcccCC
Q psy13046        332 RMGEEVGISIKLKENAKL-N--------ADDIRTFCKGKVSK  364 (365)
Q Consensus       332 ~~g~~~~a~v~~~~~~~~-~--------~~~l~~~~~~~l~~  364 (365)
                      ...+.+.+.|+..++... .        .++|++++++++..
T Consensus       355 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  396 (422)
T TIGR02155       355 GHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGV  396 (422)
T ss_pred             CCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCc
Confidence            445677777776543211 1        35677888777653

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.69  E-value=3.1e-16  Score=156.37  Aligned_cols=138  Identities=20%  Similarity=0.201  Sum_probs=119.2

Q ss_pred             CCCceEEEEecCchhhhhhccc-----------------------ccccEecCceEEEecCCcEEEEeecCcEEEECCEE
Q psy13046         16 RQKKAIHFRHFDSFLLFVELCL-----------------------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGEN   72 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~~-----------------------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~   72 (365)
                      ++.||++++++..+.+|++...                       ..+||+|||++++|+||+++|.||.+|+|+.+|.+
T Consensus       383 ~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~  462 (576)
T PRK05620        383 RNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEW  462 (576)
T ss_pred             CCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEE
Confidence            4689999999999999997631                       35799999999999999999999999999999999


Q ss_pred             echHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC---CCHHHHHHHHHhhhhhcccceEEEeeeEEeeec
Q psy13046         73 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVKRKISCIFIIIVRISCECI  149 (365)
Q Consensus        73 v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~---~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~  149 (365)
                      |+|.+||.++.+||.|.++.|++.++...++.+.+++++.++..   ...+++.+++++.++.+..+.     .+.+.+.
T Consensus       463 i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~  537 (576)
T PRK05620        463 IYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPE-----YWTFVDE  537 (576)
T ss_pred             EcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCe-----EEEEecc
Confidence            99999999999999999999999999888888888888876533   245788888888887766663     3446678


Q ss_pred             cccccCcee
Q psy13046        150 LLKYRSAST  158 (365)
Q Consensus       150 l~~~~~gk~  158 (365)
                      +|++.+||+
T Consensus       538 ~P~t~~GKv  546 (576)
T PRK05620        538 IDKTSVGKF  546 (576)
T ss_pred             CCCCCcccC
Confidence            999999998

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.68  E-value=2.9e-16  Score=152.17  Aligned_cols=133  Identities=21%  Similarity=0.238  Sum_probs=114.2

Q ss_pred             CceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceE
Q psy13046         18 KKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA   91 (365)
Q Consensus        18 ~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~   91 (365)
                      .||++++++..+.+|++..      ...+||+|||++++| ||+++|.||.||+|+++|.+|+|.+||+.+.+||.|.++
T Consensus       304 ~gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~  382 (458)
T PRK09029        304 DGEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQV  382 (458)
T ss_pred             CCEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceE
Confidence            3899999999999998663      357899999999999 999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         92 YAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        92 ~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +|++++++..++.+.++++.+.  ..+.+++.++++++++.+..+.     .....+.++++.+||+
T Consensus       383 ~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~l~~~~~P~-----~~~~~~~~p~t~~gKi  442 (458)
T PRK09029        383 FVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDKLARFQQPV-----AYYLLPPELKNGGIKI  442 (458)
T ss_pred             EEEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhhchhccCCe-----EEEEecccccCcCCCc
Confidence            9999999888888888887663  3467789999998887766653     3335555778888887

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.68  E-value=3e-16  Score=171.22  Aligned_cols=144  Identities=19%  Similarity=0.067  Sum_probs=116.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-----------------------------ccccEecCceEEEecCCc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-----------------------------LLFPFLSRDQFVLREDGY   55 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-----------------------------~~~~~~tgDl~~~~~~g~   55 (365)
                      .+++.|+.|||+++|+.++.||+++.      |                             ..+||+|||++++++||+
T Consensus       614 ~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~  693 (1389)
T TIGR03443       614 QTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGN  693 (1389)
T ss_pred             CcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCC
Confidence            45677889999999999999999752      2                             247999999999999999


Q ss_pred             EEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCC-CCC-----------------
Q psy13046         56 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-AKL-----------------  117 (365)
Q Consensus        56 ~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~-~~~-----------------  117 (365)
                      ++|.||.||+||++|++|+|.|||.++.+||.|.+++|++.++....+.+++++++... .+.                 
T Consensus       694 l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~  773 (1389)
T TIGR03443       694 VECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVV  773 (1389)
T ss_pred             EEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccch
Confidence            99999999999999999999999999999999999999998887667788888876521 110                 


Q ss_pred             --------CHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCceeE
Q psy13046        118 --------NADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSASTV  159 (365)
Q Consensus       118 --------~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~~  159 (365)
                              ..+++.++++++++.++.+     ..+...+.+|++.+||+-
T Consensus       774 ~~~~~~~~~~~~l~~~l~~~Lp~y~~P-----~~~~~~~~lP~t~~GKid  818 (1389)
T TIGR03443       774 KGLIKYRKLIKDIREYLKKKLPSYAIP-----TVIVPLKKLPLNPNGKVD  818 (1389)
T ss_pred             hhhhhhhhhHHHHHHHHHhhCCcccCC-----ceEEEcccCCCCCCcccc
Confidence                    1245666666666665554     334456789999999983

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.68  E-value=3.3e-16  Score=156.85  Aligned_cols=141  Identities=18%  Similarity=0.117  Sum_probs=115.4

Q ss_pred             CCCCCCceEE--EEecCchhhhhhcc-----c-------ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhH
Q psy13046         13 HSSRQKKAIH--FRHFDSFLLFVELC-----L-------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI   78 (365)
Q Consensus        13 ~~~~~~g~~~--~~~~~~~~~y~~~~-----~-------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~i   78 (365)
                      ++.++.|+++  +.+...+.+|.+..     |       ..+||+|||++++|+||++++.||.||+||++|.+|+|.+|
T Consensus       398 ~~~g~~Gel~~~i~~~~~~~GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eI  477 (600)
T PRK08279        398 VKPGEVGLLIGRITDRGPFDGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEV  477 (600)
T ss_pred             CCCCCceeEEEEecCcccccccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHH
Confidence            4567789998  66888999994321     1       25799999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEEEeeCCCC-CceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046         79 EEFIQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS  157 (365)
Q Consensus        79 e~~l~~~~~V~~~~v~~vp~~~~-~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk  157 (365)
                      |+.+.+||.|.+++|++++.+.. +....+++++.++...+.+++.+++++.++.+..+.     .+.+.+.+|++.+||
T Consensus       478 E~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~lP~t~~GK  552 (600)
T PRK08279        478 ENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPL-----FVRLVPELETTGTFK  552 (600)
T ss_pred             HHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCe-----EEEeecCCCCCcchh
Confidence            99999999999999999987653 344456666665555677899999999888777664     344667899999999


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus       553 i  553 (600)
T PRK08279        553 Y  553 (600)
T ss_pred             h
Confidence            8

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.68  E-value=5.4e-16  Score=153.44  Aligned_cols=142  Identities=26%  Similarity=0.317  Sum_probs=121.3

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      .++.++.||++++++..+.+|++..      |..+||+|||+++++++|++++.||.+|+++++|.+++|.+||+++.+|
T Consensus       365 ~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~  444 (542)
T PRK07786        365 DVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASH  444 (542)
T ss_pred             CCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhC
Confidence            4566789999999999999999773      5679999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeeCCCCCceEEEEEEEcCCC-CCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         86 PNVLEAYAYGVPDERMGEEVGISIKLKENA-KLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        86 ~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~-~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.|.++++++++.+..++.+.++++..+.. ....+++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       445 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~v~~iP~t~~GKv  513 (542)
T PRK07786        445 PDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPK-----ALEIVDALPRNPAGKV  513 (542)
T ss_pred             CCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCC-----EEEEeccCCCCCcccc
Confidence            999999999999877778888888876543 3556788888888877665553     3446678999998888

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.68  E-value=5.1e-16  Score=153.68  Aligned_cols=135  Identities=28%  Similarity=0.331  Sum_probs=117.9

Q ss_pred             CceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceE
Q psy13046         18 KKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA   91 (365)
Q Consensus        18 ~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~   91 (365)
                      .||++++++..+.+|+++.      |..+||+|||++++|+||+++|.||.||+++.+|.+|+|.+||..+.+||.|.++
T Consensus       388 ~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~  467 (545)
T PRK08162        388 IGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVA  467 (545)
T ss_pred             eeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEE
Confidence            5999999999999999873      5678999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         92 YAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        92 ~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++++.+++..++.+++++++.++...+.+++.+++++.++.+..+....     + ..+|.+.+||+
T Consensus       468 ~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~-----~-~~iP~t~~gK~  528 (545)
T PRK08162        468 AVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVV-----F-GELPKTSTGKI  528 (545)
T ss_pred             EEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEE-----e-cccCCCCCcCC
Confidence            9999998877888889988887655677889999998887766664332     2 35888888888

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.68  E-value=6.7e-16  Score=151.56  Aligned_cols=143  Identities=29%  Similarity=0.364  Sum_probs=122.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ++++.++.||+++++...+.+|++..      + ..+||+|||+++++++|.+++.||.+|+++++|.+++|.+||+++.
T Consensus       356 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~  435 (513)
T PRK07656        356 EEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY  435 (513)
T ss_pred             CCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHH
Confidence            44566789999999999999998763      3 3789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++.|.++++++.+++..++.+.++++.++....+.+++.+++++.++....+     ..+.+.+.+|++.+||+
T Consensus       436 ~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p-----~~i~~v~~iP~t~~gK~  505 (513)
T PRK07656        436 EHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVP-----RSIEFLDELPKNATGKV  505 (513)
T ss_pred             hCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCC-----CEEEEecCCCCCCccce
Confidence            99999999999999887888888888887655677788999888887766544     33445577999988888

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.68  E-value=4.9e-16  Score=154.36  Aligned_cols=142  Identities=27%  Similarity=0.314  Sum_probs=120.2

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..      | ..+||+|||++++|++|++++.||.+|+++++|.+|+|.+||+++.
T Consensus       401 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~  480 (560)
T PRK08751        401 TVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA  480 (560)
T ss_pred             CCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH
Confidence            44567789999999999999999762      3 4689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .|+.|.+++++++++...++.+.++++.. ....+.+++.+++++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       481 ~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~~~~~l~~~~~~~l~~~~~P~-----~v~~v~~lP~t~~gKv  549 (560)
T PRK08751        481 MMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALTAEDVKAHARANLTGYKQPR-----IIEFRKELPKTNVGKI  549 (560)
T ss_pred             hCcCeeeeEEEecCCCCCCceEEEEEEcC-CCCCCHHHHHHHHHHhhhhccCCe-----EEEEhhhCCCCccccc
Confidence            99999999999999887777777766654 334566788888888877766553     3446678999988888

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.68  E-value=4.8e-16  Score=143.82  Aligned_cols=108  Identities=11%  Similarity=0.009  Sum_probs=95.3

Q ss_pred             cccccEecCceEEE-ecCCcEEEEeecCcEEEECC---EEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy13046         37 LLLFPFLSRDQFVL-REDGYGQVVGRIKDMIIRGG---ENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  112 (365)
Q Consensus        37 ~~~~~~~tgDl~~~-~~~g~~~i~GR~~d~i~~~G---~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~  112 (365)
                      +.+|||+|||++++ |+||+++|+||.|     +|   +||+|. ||+++.+||.|.+++|+|+|++.+++.++++|++.
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~  279 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE  279 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence            46899999999998 7999999999998     78   899999 99999999999999999999999999999999876


Q ss_pred             CCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046        113 ENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus       113 ~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .  ..+.+++.++++++++. ..+     ..+.+.+.+|++.+||+
T Consensus       280 ~--~~~~~el~~~l~~~L~~-kvP-----~~v~~v~~lP~t~~GKi  317 (365)
T PRK09188        280 L--PADEKSLRARLAGAKPP-KPP-----EHIQPVAALPRDADGTV  317 (365)
T ss_pred             C--CCCHHHHHHHHHhhchh-cCC-----cEEEEECCCCCCCCCCc
Confidence            4  45678899999999887 655     34456678999999999

>PLN02479 acetate-CoA ligase

Probab=99.68  E-value=5.7e-16  Score=154.13  Aligned_cols=136  Identities=32%  Similarity=0.339  Sum_probs=113.7

Q ss_pred             CCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcce
Q psy13046         17 QKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE   90 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~   90 (365)
                      +.||+++++...+.+|++..      |..+||+|||++++|++|+++|.||.||+|+.+|.+|+|.+||.++..||.|.+
T Consensus       401 ~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~  480 (567)
T PLN02479        401 TMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLE  480 (567)
T ss_pred             CceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccce
Confidence            57999999999999999873      457899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCCCceEEEEEEEcCCCC-----CCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         91 AYAYGVPDERMGEEVGISIKLKENAK-----LNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        91 ~~v~~vp~~~~~~~~~~~v~~~~~~~-----~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++++.+++..++.+++++++.++..     ...+++.+++.++++.+..+...     .+ ..+|++.+||+
T Consensus       481 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~-----~~-~~iP~t~~gKv  547 (567)
T PLN02479        481 ASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSV-----VF-GPLPKTATGKI  547 (567)
T ss_pred             eeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceE-----Ee-ccCCCCCccCe
Confidence            99999998777788888888776432     22356777777777666555432     23 45899988888

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.67  E-value=7.3e-16  Score=151.41  Aligned_cols=142  Identities=20%  Similarity=0.271  Sum_probs=121.0

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------c------------ccccEecCceEEEecCCcEEEEeecCcEEEECCEEe
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------L------------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENI   73 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~------------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v   73 (365)
                      .++.++.|+++++++..+.+|++..      |            ...||+|||++++|++|++++.||.+|+++.+|.+|
T Consensus       348 ~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v  427 (515)
T TIGR03098       348 ECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRV  427 (515)
T ss_pred             CCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEe
Confidence            3455779999999999999998752      1            124899999999999999999999999999999999


Q ss_pred             chHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccc
Q psy13046         74 YPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKY  153 (365)
Q Consensus        74 ~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~  153 (365)
                      +|.+||.++.+||.|.++++++++++..++.++++++.......+.+++.+++++.+.....+.     .+.+.+.+|++
T Consensus       428 ~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-----~i~~v~~iP~t  502 (515)
T TIGR03098       428 SPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPA-----LIHVRQALPRN  502 (515)
T ss_pred             CHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCC-----EEEEeccCCCC
Confidence            9999999999999999999999999888898888887766556677889999988887765553     34466779999


Q ss_pred             cCcee
Q psy13046        154 RSAST  158 (365)
Q Consensus       154 ~~gk~  158 (365)
                      .+||+
T Consensus       503 ~~GK~  507 (515)
T TIGR03098       503 ANGKI  507 (515)
T ss_pred             CCCCC
Confidence            88887

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.67  E-value=7.6e-16  Score=150.81  Aligned_cols=142  Identities=11%  Similarity=-0.059  Sum_probs=111.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc----------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC----------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE   80 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~----------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~   80 (365)
                      .+++.++.||++++++..+.+|++..          ...+||+|||++++|++ ++++.||.+|+|+.+|.+|+|.+||.
T Consensus       335 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~  413 (502)
T TIGR01734       335 EPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEF  413 (502)
T ss_pred             CCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHH
Confidence            34566789999999999999999762          12369999999999977 99999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEee-CCCCCceEEEEEEEcCCCCCCH----HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccC
Q psy13046         81 FIQTHPNVLEAYAYGVP-DERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRS  155 (365)
Q Consensus        81 ~l~~~~~V~~~~v~~vp-~~~~~~~~~~~v~~~~~~~~~~----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~  155 (365)
                      .+.++|.|++++++++. .....+.+.++++.........    .++.+.+++.++.+..+     ..+...+.+|++.+
T Consensus       414 ~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P-----~~~~~v~~lP~t~~  488 (502)
T TIGR01734       414 NLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIP-----RKFIYRDQLPLTAN  488 (502)
T ss_pred             HHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCC-----cEEEEccccCCCCC
Confidence            99999999999999976 3335567778777765322222    45566666666555444     34446778999999


Q ss_pred             cee
Q psy13046        156 AST  158 (365)
Q Consensus       156 gk~  158 (365)
                      ||+
T Consensus       489 gKv  491 (502)
T TIGR01734       489 GKI  491 (502)
T ss_pred             Ccc
Confidence            998

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.67  E-value=1.1e-15  Score=149.81  Aligned_cols=143  Identities=28%  Similarity=0.358  Sum_probs=118.4

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..      + ..+||+|||++++|++|.+++.||.||+++.+|.+++|.+||.+++
T Consensus       333 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~  412 (502)
T PRK08276        333 NELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLV  412 (502)
T ss_pred             CCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHH
Confidence            44566789999999999999998763      2 4499999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++|.|.++++++++++..++.+.++++.+++...+.   +++.+.+++.+..+..+     ..+...+.+|++.+||+
T Consensus       413 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p-----~~i~~~~~lP~t~~GKi  485 (502)
T PRK08276        413 THPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCP-----RSIDFEDELPRTPTGKL  485 (502)
T ss_pred             hCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCC-----cEEEEecCCCCCcccch
Confidence            999999999999999888889999998876533222   35667777666554443     34446678999988887

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.66  E-value=1.7e-15  Score=148.69  Aligned_cols=143  Identities=26%  Similarity=0.279  Sum_probs=120.7

Q ss_pred             ccCCCCCCceEEEEecCchh-hhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFL-LFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~-~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ++++.++.||++++++..+. +|++..      +..+||+|||++++|++|++++.||.||+++++|.+|+|.+||..|.
T Consensus       343 ~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~  422 (509)
T PRK12406        343 RPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLH  422 (509)
T ss_pred             CCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHH
Confidence            45567789999999986653 776542      46789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++.|.+++++++++...++.+.+++++.+......+++.+.+++.+..+..+.     .+.+.+.+|++.+||+
T Consensus       423 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~~~~iP~t~~GK~  492 (509)
T PRK12406        423 AVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPK-----HIEIMAELPREDSGKI  492 (509)
T ss_pred             hCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCc-----EEEEeccCCCCCccch
Confidence            999999999999999877888888888877655677888899988887765553     3445678999988888

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.66  E-value=8.9e-16  Score=153.10  Aligned_cols=142  Identities=19%  Similarity=0.161  Sum_probs=106.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c------------ccccEecCceEEEecCCcEEEEeecCcEEEECCEE
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L------------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGEN   72 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~------------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~   72 (365)
                      +.++.++.||++++++..+.+|+++.      |            .++||+|||+++++ ||+++|.||.||+|+++|.+
T Consensus       390 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~  468 (578)
T PRK05850        390 IECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRN  468 (578)
T ss_pred             cCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCee
Confidence            45677889999999999999999763      2            24699999999998 89999999999999999999


Q ss_pred             echHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH------HHHHHHHHhhhhhcccceEEEeeeEEe
Q psy13046         73 IYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA------DDIRTFCKGKVKRKISCIFIIIVRISC  146 (365)
Q Consensus        73 v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~------~~L~~~l~~~l~~~~~~~~~~~~~~~~  146 (365)
                      |+|.+||.++.+|+.+. +++++++++ .++.+++++++++....+.      ..+.+.+...+........   ....+
T Consensus       469 i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~---~~~~~  543 (578)
T PRK05850        469 HYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSV---ADLVL  543 (578)
T ss_pred             cCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCc---eEEEE
Confidence            99999999999999854 788889886 6788888888876543332      2333333333332222111   11222


Q ss_pred             --eeccccccCcee
Q psy13046        147 --ECILLKYRSAST  158 (365)
Q Consensus       147 --~~~l~~~~~gk~  158 (365)
                        .+.+|++.+||+
T Consensus       544 ~~~~~iP~t~~GKi  557 (578)
T PRK05850        544 VAPGSIPITTSGKI  557 (578)
T ss_pred             eCCCCcCCCCCchH
Confidence              247899988888

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.66  E-value=1.6e-15  Score=150.16  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=119.7

Q ss_pred             CCceEEEEecCchhhhhhcc----cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEE
Q psy13046         17 QKKAIHFRHFDSFLLFVELC----LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY   92 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~----~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~   92 (365)
                      ..||++++++..+.+|++.-    ...+||+|||+++++++|++++.||.+|+++.+|.+++|.+||.++.+||.|.+++
T Consensus       383 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~  462 (542)
T PRK06018        383 TFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAA  462 (542)
T ss_pred             ceeEEEEecCCcchhhhcCcccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEE
Confidence            46999999999999998742    24689999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         93 AYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        93 v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++++++..++...+++++.++...+.+++.+++++.++.+..+     ..+.+.+.+|++.+||+
T Consensus       463 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~v~~iP~t~~GKi  523 (542)
T PRK06018        463 VIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMP-----DDVAFVDAIPHTATGKI  523 (542)
T ss_pred             EEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCC-----cEEEEeccCCCCCcchh
Confidence            99999987788888888888776677788999999888766544     33445678999999988

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.65  E-value=8.6e-16  Score=155.24  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             CCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEE-CCEEechHhHHHHHhcCCCc
Q psy13046         17 QKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~-~G~~v~p~~ie~~l~~~~~V   88 (365)
                      +.|||+++|+.+|.+|+++.      | ..|||+|||++++|+||+++|+||.||+||+ +|++|+|.+||+++.+||.|
T Consensus       457 ~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V  536 (651)
T PLN02736        457 PRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFV  536 (651)
T ss_pred             CCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCe
Confidence            47999999999999999873      3 5799999999999999999999999999995 79999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcC
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKE  113 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~  113 (365)
                      .+++|+|.   ..++.++|+|++++
T Consensus       537 ~~a~V~g~---~~~~~~~A~vv~~~  558 (651)
T PLN02736        537 AQCFVYGD---SLNSSLVAVVVVDP  558 (651)
T ss_pred             eEEEEEec---CCCceeEEEEEeCH
Confidence            99999984   25678889988764

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.65  E-value=2.2e-15  Score=147.96  Aligned_cols=141  Identities=28%  Similarity=0.360  Sum_probs=116.4

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------c--ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------L--LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~--~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      .++.++.||++++++ .+.+|++..      +  +.+||+|||+++++++|+++|.||.||+++.+|.+++|.+||+++.
T Consensus       347 ~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~  425 (511)
T PRK13391        347 ELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI  425 (511)
T ss_pred             CCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHH
Confidence            356678899999999 888998752      2  2489999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCC---CHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKL---NADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~---~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++++++++...++.+.++++..++...   ..+++.+++++.++.+..+     ..+...+.+|.+.+||+
T Consensus       426 ~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~~~~~P~t~~gKv  498 (511)
T PRK13391        426 THPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCP-----RSIDFEDELPRLPTGKL  498 (511)
T ss_pred             hCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCC-----cEEEEeecCCCCCccce
Confidence            9999999999999998888888888877654221   2356777777777665554     34446677899998888

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.64  E-value=2.9e-15  Score=148.89  Aligned_cols=142  Identities=27%  Similarity=0.375  Sum_probs=118.6

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhc------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVEL------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +.++.++.||++++++..+.+|+..      .|..+||+|||+++++++|++++.||.+|+++++|.+++|.+||+++.+
T Consensus       397 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~  476 (560)
T PRK08974        397 NEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVML  476 (560)
T ss_pred             CCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence            4456778999999999999999876      2467899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |+.|.+++++++++...++.+.++++..+ ...+.+++.+++.+.+..+..+     ....+.+.+|++.+||+
T Consensus       477 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~~~~l~~~l~~~l~~~~~P-----~~~~~~~~lP~t~~GK~  544 (560)
T PRK08974        477 HPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSLTEEELITHCRRHLTGYKVP-----KLVEFRDELPKSNVGKI  544 (560)
T ss_pred             CCCeeEEEEEeeecCCcceEEEEEEECCC-CCCCHHHHHHHHHhhcccccCC-----cEEEEhhhCCCCCCCcE
Confidence            99999999999999877877777766543 3355677888888877655544     33445678899988888

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.64  E-value=2e-15  Score=149.57  Aligned_cols=143  Identities=27%  Similarity=0.371  Sum_probs=119.3

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..      + ..+||+|||++++|++|++++.||.+|+|+.+|.+++|.+||+++.
T Consensus       374 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~  453 (547)
T PRK06087        374 KTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL  453 (547)
T ss_pred             CCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHH
Confidence            34567789999999999999998763      2 4689999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcC-CCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKE-NAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~-~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+|.|.++++++++++..++.++++++..+ ....+.+++.++++. .+..+..+     ..+.+.+.+|++.+||+
T Consensus       454 ~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P-----~~i~~v~~iP~t~sGK~  525 (547)
T PRK06087        454 QHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYP-----EHIVVIDKLPRTASGKI  525 (547)
T ss_pred             hCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCC-----eEEEEeccCCCCCCCcC
Confidence            999999999999998888889989888875 344556777777653 44444333     34556678999999988

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.64  E-value=1.2e-15  Score=163.60  Aligned_cols=140  Identities=16%  Similarity=0.093  Sum_probs=116.4

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------ccc----ccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLL----FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE   80 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~----~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~   80 (365)
                      ++++.++.||++++++..+.+|+++.      +..    +||+|||++++|+||++++.||.||++|++|.+|+|.|||+
T Consensus       980 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~ 1059 (1146)
T PRK08633        980 EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEE 1059 (1146)
T ss_pred             ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHH
Confidence            45677899999999999999999763      334    89999999999999999999999999999999999999999


Q ss_pred             HHhcCC--CcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCce
Q psy13046         81 FIQTHP--NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAS  157 (365)
Q Consensus        81 ~l~~~~--~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk  157 (365)
                      ++.+||  .+.++++++++++..++.++++++..   ..+.+++.+.+.+ .++.+..+     ......+.+|++.+||
T Consensus      1060 ~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P-----~~i~~~~~iP~t~~GK 1131 (1146)
T PRK08633       1060 ELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG---AEDVEELKRAIKESGLPNLWKP-----SRYFKVEALPLLGSGK 1131 (1146)
T ss_pred             HHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---ccCHHHHHHHHHhcCCCcccCC-----cEEEEecCcCCCCCCC
Confidence            999998  46679999999988888888877752   3456677777764 35555444     3355677899999999


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus      1132 i 1132 (1146)
T PRK08633       1132 L 1132 (1146)
T ss_pred             C
Confidence            8

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.63  E-value=4.3e-15  Score=142.85  Aligned_cols=135  Identities=24%  Similarity=0.259  Sum_probs=115.5

Q ss_pred             CCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcce
Q psy13046         17 QKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLE   90 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~   90 (365)
                      +.||++++++..+.+|++..      +..+||+|||++++++||.+++.||.+|+++++|.+|+|.+||.++.+++.|.+
T Consensus       291 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  370 (436)
T TIGR01923       291 GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQE  370 (436)
T ss_pred             CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeE
Confidence            57999999999999999752      457899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         91 AYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        91 ~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++++++++...+..+.++++..++  .+.+++.+++++.++.+..+.     .+...+.+|++.+||+
T Consensus       371 ~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~l~~~l~~~~~p~-----~i~~~~~iP~t~~GK~  431 (436)
T TIGR01923       371 AVVVPKPDAEWGQVPVAYIVSESD--ISQAKLIAYLTEKLAKYKVPI-----AFEKLDELPYNASGKI  431 (436)
T ss_pred             EEEeCCcchhcCCeeEEEEEECCC--CCHHHHHHHHHHhhhCCCCCe-----EEEEecCCCCCCCCce
Confidence            999999887667777788877653  566788888888877655442     3445678999998988

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.63  E-value=2.9e-15  Score=160.61  Aligned_cols=135  Identities=16%  Similarity=0.109  Sum_probs=112.4

Q ss_pred             CCCceEEEEecCchhhhhhcc-------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCc
Q psy13046         16 RQKKAIHFRHFDSFLLFVELC-------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~-------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      ++.||++++++..+.+|++..       ..++||+|||++++|+||++++.||.||++|++|++|+|.+||+++.+|+.+
T Consensus       979 ~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v 1058 (1140)
T PRK06814        979 DEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPD 1058 (1140)
T ss_pred             CCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCc
Confidence            568999999999999999742       2478999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .++++++++++..++.+.+++.   ..+.+.+++.+++++. ++.+..+     ..+...+.+|++.+||+
T Consensus      1059 ~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~~l~~~~~~~~l~~~~~P-----~~i~~v~~lP~t~~GKi 1121 (1140)
T PRK06814       1059 ALHAAVSIPDARKGERIILLTT---ASDATRAAFLAHAKAAGASELMVP-----AEIITIDEIPLLGTGKI 1121 (1140)
T ss_pred             ccEEEEEcccCCCCceEEEEEc---CCCcCHHHHHHHHHHcCCCcccCC-----cEEEEecCcCCCCCCCC
Confidence            9999999999888887665543   2335567888888764 5544444     34456678999999998

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.63  E-value=2.9e-15  Score=149.43  Aligned_cols=141  Identities=21%  Similarity=0.218  Sum_probs=112.2

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      .++.++.||++++++..+.+|+++.      ...+||+|||++++ ++|+++|.||.||+|+++|.+|+|.+||.++++|
T Consensus       405 ~~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~  483 (579)
T PRK09192        405 PLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQE  483 (579)
T ss_pred             CCCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhc
Confidence            3455678999999999999999772      24679999999999 9999999999999999999999999999999999


Q ss_pred             CCcc--eEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEee--eccccccCcee
Q psy13046         86 PNVL--EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCE--CILLKYRSAST  158 (365)
Q Consensus        86 ~~V~--~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~gk~  158 (365)
                      |.|.  ++++++++++. ++.+.++++..++...+.+++.+++++.+........    .+.+.  +.+|++.+||+
T Consensus       484 p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~----~i~~~~~~~lP~t~~GKv  555 (579)
T PRK09192        484 PELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEA----AVELVPPHSLPRTSSGKL  555 (579)
T ss_pred             CCccCCcEEEEEeccCC-CeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCc----eEEEeCCCCcCCCCCcch
Confidence            9998  89999999874 4567777776655445567888888887643222111    12222  47999998988

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.62  E-value=8.1e-15  Score=144.05  Aligned_cols=138  Identities=32%  Similarity=0.391  Sum_probs=120.2

Q ss_pred             CCCceEEEEecCchhhhhhc------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcc
Q psy13046         16 RQKKAIHFRHFDSFLLFVEL------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL   89 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~   89 (365)
                      ++.||++++++..+.+|+..      .|..+||+|||+++++++|++++.||.+|+++.+|.+++|.+||.++.+++.|.
T Consensus       365 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~  444 (521)
T PRK06187        365 GEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVA  444 (521)
T ss_pred             CCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCce
Confidence            78999999999999999866      256779999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         90 EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        90 ~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++++++++++..++.+.++++..++...+..++.+++++.++....+.     .+...+.+|++.+||+
T Consensus       445 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-----~i~~v~~~P~t~~gK~  508 (521)
T PRK06187        445 EVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPK-----RIAFVDELPRTSVGKI  508 (521)
T ss_pred             EEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCce-----EEEEccCCCCCCCCCe
Confidence            999999998878888889998887766777889999988877654442     3334567899988888

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.62  E-value=8.3e-15  Score=143.81  Aligned_cols=143  Identities=22%  Similarity=0.158  Sum_probs=117.5

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      ++++.++.||+.+++...+.+|++..      |..+||+|||+++++++|.++|.||.+|+++.+|.+++|.+||+.+.+
T Consensus       349 ~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~  428 (508)
T TIGR02262       349 QDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQ  428 (508)
T ss_pred             CCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHh
Confidence            34566788999999999999998763      457899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCC---CCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~---~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ++.|.++++++.++....+.+.+++++.++..   ...+++.+++++.+.....+.     .+...+.+|++.+||+
T Consensus       429 ~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~-----~i~~~~~iP~t~~gKi  500 (508)
T TIGR02262       429 HPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPR-----WIVFVDDLPKTATGKI  500 (508)
T ss_pred             CCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCc-----eEEEecCCCCCCCCcE
Confidence            99999999999988766777778887766432   234677777777766554442     3345577899988888

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.61  E-value=6.7e-15  Score=144.09  Aligned_cols=141  Identities=16%  Similarity=0.023  Sum_probs=112.3

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc-------c---ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHH
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC-------L---LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEF   81 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~-------~---~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~   81 (365)
                      .++.++.||+.++++..+.+|++..       +   ..+||+|||++++ ++|++++.||.+|+++.+|.+++|.+||..
T Consensus       338 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~  416 (503)
T PRK04813        338 KLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQN  416 (503)
T ss_pred             CCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHH
Confidence            4556789999999999999999773       1   1259999999999 999999999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH----HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046         82 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS  157 (365)
Q Consensus        82 l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk  157 (365)
                      +.++|.|.++.++++++....+.+.++++..++.....    +++.+++.+.++.+..+     ..+...+.+|++.+||
T Consensus       417 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P-----~~i~~~~~~P~t~~gK  491 (503)
T PRK04813        417 LRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIP-----RKFIYRDSLPLTPNGK  491 (503)
T ss_pred             HHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCC-----eEEEEeccCCCCCCCC
Confidence            99999999999999887766778888887765321111    34566666555544444     3444667899999998


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus       492 v  492 (503)
T PRK04813        492 I  492 (503)
T ss_pred             C
Confidence            8

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.61  E-value=3.6e-15  Score=151.40  Aligned_cols=93  Identities=14%  Similarity=0.081  Sum_probs=82.8

Q ss_pred             CCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEE-ECCEEechHhHHHHHhcCCCc
Q psy13046         17 QKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      +.|||+++|+.+|.||++..      | .+|||+|||++++|+||+++|+||.||+|+ .+|++|+|.+||+++.+||.|
T Consensus       540 ~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V  619 (746)
T PTZ00342        540 PKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFI  619 (746)
T ss_pred             CceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCc
Confidence            47999999999999999873      4 589999999999999999999999999999 689999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEc
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLK  112 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~  112 (365)
                      .+++|+|...   ...+.|.|+++
T Consensus       620 ~~~~VvG~~~---~~~~~Alvv~d  640 (746)
T PTZ00342        620 NFCVVYGDDS---MDGPLAIISVD  640 (746)
T ss_pred             cEEEEEccCC---ccccEEEEECC
Confidence            9999999743   33567777654

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.61  E-value=7.4e-15  Score=159.50  Aligned_cols=143  Identities=12%  Similarity=0.051  Sum_probs=117.3

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-------ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE   77 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~   77 (365)
                      ++++.|+.||+++.|+.++.+|++..      |       ...||+|||++++++||+++|.||.|++||++|.+|+|.+
T Consensus       795 ~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~e  874 (1296)
T PRK10252        795 RPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGE  874 (1296)
T ss_pred             CCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHH
Confidence            45677889999999999999999763      2       2349999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEEEeeC----CCCC--ceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccc
Q psy13046         78 IEEFIQTHPNVLEAYAYGVPD----ERMG--EEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILL  151 (365)
Q Consensus        78 ie~~l~~~~~V~~~~v~~vp~----~~~~--~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  151 (365)
                      ||.+|.+||.|.++.++++..    ...+  ..++++++...+...+.+++.+++++.++.++.+.     .....+.+|
T Consensus       875 IE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~-----~~~~~~~lP  949 (1296)
T PRK10252        875 IDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPV-----VLLQLDQLP  949 (1296)
T ss_pred             HHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCc-----EEEEecCCC
Confidence            999999999999998876631    1112  36788888776655677889999998887776553     334556789


Q ss_pred             cccCcee
Q psy13046        152 KYRSAST  158 (365)
Q Consensus       152 ~~~~gk~  158 (365)
                      ++.+||+
T Consensus       950 ~t~~GKi  956 (1296)
T PRK10252        950 LSANGKL  956 (1296)
T ss_pred             CCCCcCh
Confidence            9999988

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.60  E-value=1.8e-14  Score=137.85  Aligned_cols=113  Identities=24%  Similarity=0.322  Sum_probs=98.5

Q ss_pred             cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC
Q psy13046         39 LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN  118 (365)
Q Consensus        39 ~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~  118 (365)
                      .+||+|||++++|+||+++|.||.||+++++|.+|+|.+||+++.++|.|.+++|++++++..++.+.++++...  ..+
T Consensus       290 ~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~  367 (414)
T PRK08308        290 DKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EID  367 (414)
T ss_pred             CceEECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCC
Confidence            578999999999999999999999999999999999999999999999999999999999888888888877654  456


Q ss_pred             HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046        119 ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus       119 ~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+++.+++++.+..+..+     ..+.+.+.+|++.+||+
T Consensus       368 ~~~l~~~l~~~l~~~~~P-----~~i~~v~~iP~t~~GKi  402 (414)
T PRK08308        368 PVQLREWCIQHLAPYQVP-----HEIESVTEIPKNANGKV  402 (414)
T ss_pred             HHHHHHHHHHhCccccCC-----cEEEEeccCCCCCCcCe
Confidence            788888888887766544     34556778999999998

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.59  E-value=3.2e-15  Score=145.76  Aligned_cols=93  Identities=25%  Similarity=0.214  Sum_probs=83.9

Q ss_pred             CCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEE-ECCEEechHhHHHHHhcCCCc
Q psy13046         17 QKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      +.|||.+||+++|.||+++.      | ++|||+|||+|.+|++|+++|+||+|++|+ .+|+||.|+.||+.+.++|.|
T Consensus       419 d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I  498 (613)
T COG1022         419 DDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLI  498 (613)
T ss_pred             cCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCe
Confidence            48999999999999999985      6 599999999999999999999999999999 999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcC
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKE  113 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~  113 (365)
                      ++.+++| +.   ...+.+.++++.
T Consensus       499 ~qi~vvg-~~---k~~~~AlIvp~~  519 (613)
T COG1022         499 EQICVVG-DD---KKFLVALIVPDF  519 (613)
T ss_pred             eEEEEEe-cC---CcceEEEEeCCH
Confidence            9999999 33   345667777653

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.59  E-value=2.6e-14  Score=140.92  Aligned_cols=141  Identities=25%  Similarity=0.324  Sum_probs=115.4

Q ss_pred             cCCCCCC--ceEEEEecCchhhhhhcc------c----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         12 QHSSRQK--KAIHFRHFDSFLLFVELC------L----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        12 ~~~~~~~--g~~~~~~~~~~~~y~~~~------~----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +++.++.  |++ ++++..+.+|++..      |    ..+||+|||++++|++|++++.||.||+++.+|.+|+|.+||
T Consensus       369 ~~~~g~~~~g~l-~~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE  447 (533)
T PRK07798        369 PVEPGSGEIGWI-ARRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVE  447 (533)
T ss_pred             CCCCCCCCeeEE-EeecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHH
Confidence            3444444  555 45667888998762      2    135999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .++.++|.|.+++++++++...++.+.+++++.++...+.+++.+++++.++.+..+.     .+...+.+|++.+||+
T Consensus       448 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~~~~iP~t~~GK~  521 (533)
T PRK07798        448 EALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPR-----AIWFVDEVQRSPAGKA  521 (533)
T ss_pred             HHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCe-----EEEEcccCCCCCcchh
Confidence            9999999999999999998877888888888877666678899999988876665543     3445678999988888

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.58  E-value=6e-15  Score=149.03  Aligned_cols=97  Identities=18%  Similarity=0.152  Sum_probs=85.5

Q ss_pred             CCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEE-ECCEEechHhHHHHHhcCC
Q psy13046         14 SSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHP   86 (365)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~ie~~l~~~~   86 (365)
                      +.+..|||+++++..|.+|+++.      |..|||+|||++++|+||+++|+||.||+|+ .+|++|+|.+||+++.+||
T Consensus       461 ~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p  540 (660)
T PLN02430        461 GEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNP  540 (660)
T ss_pred             CCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCC
Confidence            33457999999999999999873      5689999999999999999999999999999 5799999999999999999


Q ss_pred             CcceEEEEEeeCCCCCceEEEEEEEcC
Q psy13046         87 NVLEAYAYGVPDERMGEEVGISIKLKE  113 (365)
Q Consensus        87 ~V~~~~v~~vp~~~~~~~~~~~v~~~~  113 (365)
                      .|.+++|+|..   .++.++++|++++
T Consensus       541 ~V~~~~V~G~~---~~~~~~A~vv~~~  564 (660)
T PLN02430        541 IVEDIWVYGDS---FKSMLVAVVVPNE  564 (660)
T ss_pred             CeeEEEEEecC---CcceEEEEEEcCH
Confidence            99999999943   3567788887653

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.56  E-value=1.3e-14  Score=147.39  Aligned_cols=93  Identities=16%  Similarity=0.072  Sum_probs=81.7

Q ss_pred             CCceEEEEecCchhhhhhcc------c---ccc--cEecCceEEEecCCcEEEEeecCcEEEE-CCEEechHhHHHHHhc
Q psy13046         17 QKKAIHFRHFDSFLLFVELC------L---LLF--PFLSRDQFVLREDGYGQVVGRIKDMIIR-GGENIYPKEIEEFIQT   84 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~------~---~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~-~G~~v~p~~ie~~l~~   84 (365)
                      ..|||+++|+.+|.+|+++.      |   ++|  ||+|||+|++|+||+++|+||.||+||. +|++|+|.+||+++.+
T Consensus       501 p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~  580 (696)
T PLN02387        501 PRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSV  580 (696)
T ss_pred             CCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhc
Confidence            47999999999999999773      3   124  9999999999999999999999999996 7999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEc
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLK  112 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~  112 (365)
                      ||.|.+++|+|.+.   ...++++|+++
T Consensus       581 ~p~V~~~~V~g~~~---~~~~~a~vv~~  605 (696)
T PLN02387        581 SPYVDNIMVHADPF---HSYCVALVVPS  605 (696)
T ss_pred             CCCeeEEEEEecCC---cceEEEEEEeC
Confidence            99999999999873   34566777765

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.56  E-value=1.1e-14  Score=146.30  Aligned_cols=140  Identities=13%  Similarity=0.037  Sum_probs=107.7

Q ss_pred             CCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEE----ecCCcEEEEeecCcEEE-ECCEEec--hHhHHH
Q psy13046         15 SRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVL----REDGYGQVVGRIKDMII-RGGENIY--PKEIEE   80 (365)
Q Consensus        15 ~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~----~~~g~~~i~GR~~d~i~-~~G~~v~--p~~ie~   80 (365)
                      .+..|||+++++..|.+|+++.      | .++||+|||++++    |++|+++|.||.||+|+ .+|++++  |.|+|.
T Consensus       408 ~~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~  487 (614)
T PRK08180        408 VGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARA  487 (614)
T ss_pred             CCCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHH
Confidence            3457999999999999999763      3 4799999999999    56899999999999887 6798766  789999


Q ss_pred             HHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCC---------------CCCHHHHHHHHHhhhhhcccc---eEEEee
Q psy13046         81 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA---------------KLNADDIRTFCKGKVKRKISC---IFIIIV  142 (365)
Q Consensus        81 ~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~---------------~~~~~~L~~~l~~~l~~~~~~---~~~~~~  142 (365)
                      ++.+||.|++++|+|++++    .+.++|+++++.               ..+.+++.+++++.+..+...   ......
T Consensus       488 ~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~  563 (614)
T PRK08180        488 VSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVA  563 (614)
T ss_pred             HhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhhee
Confidence            9999999999999999874    355777765431               123456888888877665521   111225


Q ss_pred             eEEeeeccccccCcee
Q psy13046        143 RISCECILLKYRSAST  158 (365)
Q Consensus       143 ~~~~~~~l~~~~~gk~  158 (365)
                      .+.+.+.+++..+||+
T Consensus       564 ~~~~~~~~p~~~~gk~  579 (614)
T PRK08180        564 RALLLDEPPSLDAGEI  579 (614)
T ss_pred             EEEEecCCCCCccCcc
Confidence            5667777888888888

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.55  E-value=4.4e-14  Score=139.92  Aligned_cols=145  Identities=21%  Similarity=0.145  Sum_probs=105.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +.++.++.||++++++..+.+|++..      +..+||+|||++++|++|++++.||.||+|+.+|.+|+|.+||..+.+
T Consensus       379 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~  458 (545)
T PRK07768        379 QVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAAR  458 (545)
T ss_pred             CCCCCCCEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHh
Confidence            34566788999999999999998652      356799999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeC--CCCCceEEEEEEEcCCCC-CCHHHHHHHHHhhhhhcccceEEEeeeEEee--eccccccCcee
Q psy13046         85 HPNVLEAYAYGVPD--ERMGEEVGISIKLKENAK-LNADDIRTFCKGKVKRKISCIFIIIVRISCE--CILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~--~~~~~~~~~~v~~~~~~~-~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~gk~  158 (365)
                      ||.|.++++++++.  ...++...++++...... ....++.+++++.+......+.   ..+.+.  +.+|++.+||+
T Consensus       459 ~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p---~~v~~v~~~~lP~t~~GKi  534 (545)
T PRK07768        459 VEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRP---RNVVVLGPGSIPKTPSGKL  534 (545)
T ss_pred             CcccccceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCc---cEEEEeCCCcCCCCCchhH
Confidence            99999988887754  323444444444433211 1223566666666554433211   122233  36899988887

>KOG1256|consensus

Probab=99.52  E-value=2.6e-14  Score=138.25  Aligned_cols=97  Identities=15%  Similarity=0.117  Sum_probs=87.7

Q ss_pred             CCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEE-ECCEEechHhHHHHHhcC
Q psy13046         14 SSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~ie~~l~~~   85 (365)
                      +.+..|||++||+++|.||+++.      + +.||++|||+|++|++|.+.|+||+|+++| .+|++|.|+.||++..+.
T Consensus       494 a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~  573 (691)
T KOG1256|consen  494 ADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRS  573 (691)
T ss_pred             cCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcC
Confidence            44558999999999999999884      4 789999999999999999999999999999 999999999999999999


Q ss_pred             CCcceEEEEEeeCCCCCceEEEEEEEcC
Q psy13046         86 PNVLEAYAYGVPDERMGEEVGISIKLKE  113 (365)
Q Consensus        86 ~~V~~~~v~~vp~~~~~~~~~~~v~~~~  113 (365)
                      +.|.+.+|.|-..   ...+.+.|++++
T Consensus       574 ~~V~qi~V~g~s~---~~~LvaiVvpd~  598 (691)
T KOG1256|consen  574 LPVQQIFVLGDSL---RSFLVAIVVPDP  598 (691)
T ss_pred             CceEEEEEECCcc---hhcEEEEEecCh
Confidence            9999999999763   456888888765

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.51  E-value=7.5e-14  Score=142.15  Aligned_cols=94  Identities=17%  Similarity=0.100  Sum_probs=80.5

Q ss_pred             CCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEE-ECCEEechHhHHHHHhcCCC
Q psy13046         16 RQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPN   87 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~ie~~l~~~~~   87 (365)
                      ++.|||+++|+.+|.||++..      | .+|||+|||++++|+||+++|+||.||+|| .+|++|+|.+||+++.+||.
T Consensus       505 ~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~  584 (700)
T PTZ00216        505 EPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNEL  584 (700)
T ss_pred             CCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcC
Confidence            457999999999999999873      4 578999999999999999999999999998 99999999999999999999


Q ss_pred             cce--EEEEEeeCCCCCceEEEEEEEc
Q psy13046         88 VLE--AYAYGVPDERMGEEVGISIKLK  112 (365)
Q Consensus        88 V~~--~~v~~vp~~~~~~~~~~~v~~~  112 (365)
                      |.+  +++++.++   ...++++++++
T Consensus       585 V~~~~~~v~~~~~---~~~l~a~vv~~  608 (700)
T PTZ00216        585 VVPNGVCVLVHPA---RSYICALVLTD  608 (700)
T ss_pred             cccceEEEEEecC---CceEEEEEecC
Confidence            997  34444433   35677777654

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.50  E-value=2.8e-14  Score=144.13  Aligned_cols=129  Identities=11%  Similarity=-0.071  Sum_probs=104.2

Q ss_pred             CCccccccCCcccccccccccccccc-cccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFEC-RRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~-~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      ...+.+. ||.||+............ ....++|+|+++..+.|+|.....++..  ..||+ +.|.++++||+++|+.|
T Consensus       512 ~~~l~~~-ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt  588 (642)
T COG1020         512 ARRLLNL-YGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLG--VPGELYIAGLGLALGYLNRPDLT  588 (642)
T ss_pred             cceEeec-cCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCC--CCeeeEECCcchhhhhcCChhhh
Confidence            4566777 999996544432211111 1145789999999999999544444433  55887 99999999999999999


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCC
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP  318 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~  318 (365)
                      ++.|..+.+|+|||++++..||.+.++||.|+++|++|+||.+.|||..+.++|
T Consensus       589 ~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         589 AERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             HHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            999974459999999999999999999999999999999999999999998875

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.49  E-value=7.5e-14  Score=140.48  Aligned_cols=145  Identities=8%  Similarity=-0.046  Sum_probs=102.2

Q ss_pred             CCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEE-e---cCCcEEEEeecCcEEE-ECCEEechHhH--H
Q psy13046         14 SSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVL-R---EDGYGQVVGRIKDMII-RGGENIYPKEI--E   79 (365)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~-~---~~g~~~i~GR~~d~i~-~~G~~v~p~~i--e   79 (365)
                      +.|+.|||+++++..|.+|+++.      | .++||+|||++++ |   ++|+++|.||.||+|+ .+|++|+|.+|  |
T Consensus       419 ~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e  498 (624)
T PRK12582        419 PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPD  498 (624)
T ss_pred             cCCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHH
Confidence            45778999999999999999763      3 5799999999998 4   4699999999999998 68999999888  5


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEE------EEEcCCC----CCCHHHHHHHHHhhhhhcc---cceEEEeeeEEe
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGIS------IKLKENA----KLNADDIRTFCKGKVKRKI---SCIFIIIVRISC  146 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~------v~~~~~~----~~~~~~L~~~l~~~l~~~~---~~~~~~~~~~~~  146 (365)
                      .++.+||.|.+++|+|++++..++.+...      ++..++.    ..+.+++.++++..+.+.+   +..........+
T Consensus       499 ~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~  578 (624)
T PRK12582        499 AVAACSPVIHDAVVAGQDRAFIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALL  578 (624)
T ss_pred             HHHhcCcchheEEEEcCCCCcEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEE
Confidence            78899999999999999876544332100      0111110    0123567777777766554   111102244556


Q ss_pred             eeccccccCcee
Q psy13046        147 ECILLKYRSAST  158 (365)
Q Consensus       147 ~~~l~~~~~gk~  158 (365)
                      .+..++..+||+
T Consensus       579 ~~~~~~~~~g~~  590 (624)
T PRK12582        579 MTEPPSIDAGEI  590 (624)
T ss_pred             eCCCCCccCCcC
Confidence            666777766666

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.45  E-value=8.2e-13  Score=124.54  Aligned_cols=108  Identities=18%  Similarity=0.236  Sum_probs=88.5

Q ss_pred             cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC--
Q psy13046         41 PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN--  118 (365)
Q Consensus        41 ~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~--  118 (365)
                      |++|||++++|++|+++|.||.||+|+++|.+|+|.+||+++.+||.|.++++..     .++.+.++|+++++....  
T Consensus       276 ~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~~~~  350 (386)
T TIGR02372       276 RLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADEAEL  350 (386)
T ss_pred             eeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCChHHH
Confidence            6899999999999999999999999999999999999999999999999988752     356788888887643322  


Q ss_pred             HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046        119 ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus       119 ~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+++.++++++++.+..+     ..+.+.+.+|++.+||+
T Consensus       351 ~~~l~~~~~~~L~~~~~P-----~~i~~~~~lP~t~~GKi  385 (386)
T TIGR02372       351 EIELRATAARHLPAPARP-----DRFRFGTELPRTGAGKL  385 (386)
T ss_pred             HHHHHHHHHHhCCCCCCC-----cEEEEcccCCCCCCCCc
Confidence            346777777777665555     34556788999988886

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.36  E-value=9.8e-12  Score=119.24  Aligned_cols=139  Identities=17%  Similarity=0.268  Sum_probs=97.3

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecC-C-----cEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRED-G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~-g-----~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +++++|+.|++.+++...      ..+..+||+|||+++++++ |     +++|.||.+|+|+++|.+|+|.+||.++..
T Consensus       266 ~~v~~Ge~Gelvvt~~~~------~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~  339 (422)
T TIGR02155       266 EVLPDGEEGELVFTTLTK------EALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILK  339 (422)
T ss_pred             CCCCCCCeeEEEEecCCc------cccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHh
Confidence            556788999999987422      2345679999999999876 4     578999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCC-----CCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAK-----LNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~-----~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ||.|.....+.+......+.+.+.++..++..     .+.+.+.+.+.+.+...+.....  -.+..+..+|++. ||.
T Consensus       340 ~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--v~~~~~~~lp~~~-GK~  415 (422)
T TIGR02155       340 MDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD--VHLVEPGSLPRSE-GKA  415 (422)
T ss_pred             CcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE--EEEECCCCccCCC-CCc
Confidence            99998666666665444456666666654321     11233445555555555444322  1233345788875 887

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1180|consensus

Probab=99.35  E-value=1.5e-12  Score=121.44  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=88.1

Q ss_pred             eccCCCCCCceEEEEecCchhhhhhcc------c--ccc--cEecCceEEEecCCcEEEEeecCcEEE-ECCEEechHhH
Q psy13046         10 ANQHSSRQKKAIHFRHFDSFLLFVELC------L--LLF--PFLSRDQFVLREDGYGQVVGRIKDMII-RGGENIYPKEI   78 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~------~--~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~i   78 (365)
                      +.+...+.+|||+++|+++-.+|+++.      |  ++|  ||+|||+|++.+||.+.|.+|+||++| -+|+.|+.+.+
T Consensus       475 Y~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~Kv  554 (678)
T KOG1180|consen  475 YFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKV  554 (678)
T ss_pred             ccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHH
Confidence            334443459999999999999999983      3  377  999999999999999999999999999 99999999999


Q ss_pred             HHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcC
Q psy13046         79 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKE  113 (365)
Q Consensus        79 e~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~  113 (365)
                      |.++.+.|.|...+|++...   ...+++.|++++
T Consensus       555 Ea~l~s~p~V~NICvyAd~~---~s~~VaiVVPn~  586 (678)
T KOG1180|consen  555 EAALRSSPYVDNICVYADSN---KSKPVAIVVPNQ  586 (678)
T ss_pred             HHHHhcCcchhheEEecccc---cceeEEEEcCCc
Confidence            99999999999999999875   345778888764

>KOG1179|consensus

Probab=99.35  E-value=2.1e-12  Score=120.97  Aligned_cols=142  Identities=16%  Similarity=0.152  Sum_probs=117.0

Q ss_pred             cCCCCCCceEE--EEecCc---hhhhhhcc-----------c--ccccEecCceEEEecCCcEEEEeecCcEEEECCEEe
Q psy13046         12 QHSSRQKKAIH--FRHFDS---FLLFVELC-----------L--LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENI   73 (365)
Q Consensus        12 ~~~~~~~g~~~--~~~~~~---~~~y~~~~-----------~--~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v   73 (365)
                      +.++||.|.+.  +..-+-   |.||.+..           |  .+-||.|||+-..|+.|++||.+|+.|++.++|+||
T Consensus       442 ~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENV  521 (649)
T KOG1179|consen  442 PCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENV  521 (649)
T ss_pred             ECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcc
Confidence            45678888776  444455   89999842           3  356899999999999999999999999999999999


Q ss_pred             chHhHHHHHhcCCCcceEEEEEeeCCCC-CceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeecccc
Q psy13046         74 YPKEIEEFIQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLK  152 (365)
Q Consensus        74 ~p~~ie~~l~~~~~V~~~~v~~vp~~~~-~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  152 (365)
                      ++.|||..+.....++++.|+||.-+.. |..-+|.++..+..+.+.+.+...++..++.+..+++     +++.+++.+
T Consensus       522 sTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~F-----lRl~~~i~~  596 (649)
T KOG1179|consen  522 STTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRF-----LRLQDEIEK  596 (649)
T ss_pred             cHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHH-----HHHHhhhhc
Confidence            9999999999999999999999987664 4556677777888888889999999999988877754     447777888


Q ss_pred             ccCcee
Q psy13046        153 YRSAST  158 (365)
Q Consensus       153 ~~~gk~  158 (365)
                      +++=|.
T Consensus       597 TgTFKl  602 (649)
T KOG1179|consen  597 TGTFKL  602 (649)
T ss_pred             ccchhh
Confidence            764433

>PTZ00297 pantothenate kinase; Provisional

Probab=99.33  E-value=5.1e-12  Score=134.56  Aligned_cols=127  Identities=15%  Similarity=0.076  Sum_probs=95.0

Q ss_pred             CCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVK  265 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~  265 (365)
                      +..+..+ ||+||+..   .....   ...++|.|+|++++||.|.+...   .....||+ +       +|+++|++|+
T Consensus       778 ~i~i~~g-~glTE~~~---~~~~~---~~~~~G~PlpgvEvKI~~~~E~~---~~~~~GEIlv-------r~~kdpe~T~  840 (1452)
T PTZ00297        778 HISVCYV-PCLREVFF---LPSEG---VFCVDGTPAPSLQVDLEPFDEPS---DGAGIGQLVL-------AKKGEPRRTL  840 (1452)
T ss_pred             CceEEEe-cceEEeee---ecCCC---CcccCCeecCceEEEEccccccc---CCCCCCeEEE-------EECCChHHHH
Confidence            3445666 99999532   11111   12245999999999998642211   11234776 5       3569999998


Q ss_pred             cccCCCCeeecCceEEEccCCcEEEEeecCceEE-eCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        266 APDRKKCSQRPRYQFVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       266 ~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~-~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      +.+  +||+         +||+|.|+||+||+|| .+|++|+|+.||+.+..+|.|.+++|+|...+    .++|+|+++
T Consensus       841 e~~--~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd  905 (1452)
T PTZ00297        841 PIA--AQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPN  905 (1452)
T ss_pred             Hhh--CcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeC
Confidence            743  6785         5899999999999999 79999999999999999999999999997665    288888875


Q ss_pred             C
Q psy13046        345 E  345 (365)
Q Consensus       345 ~  345 (365)
                      .
T Consensus       906 ~  906 (1452)
T PTZ00297        906 R  906 (1452)
T ss_pred             H
Confidence            3

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.25  E-value=1e-11  Score=118.25  Aligned_cols=82  Identities=21%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcc------cc-------cc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechH
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELC------LL-------LF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPK   76 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~------~~-------~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~   76 (365)
                      .++.++.||++++++..+.+|+++.      |.       .+  ||+|||++++|++|+++|.||.||+++.+|.+++|.
T Consensus       312 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~  391 (408)
T TIGR01733       312 PVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELG  391 (408)
T ss_pred             CCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechH
Confidence            3456788999999999999999742      11       12  999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCcceEEE
Q psy13046         77 EIEEFIQTHPNVLEAYA   93 (365)
Q Consensus        77 ~ie~~l~~~~~V~~~~v   93 (365)
                      +||+++..|+.|.+++|
T Consensus       392 ~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       392 EIEAALLRHPGVREAVV  408 (408)
T ss_pred             HHHHHHhcCcchhhhcC
Confidence            99999999999987754

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.23  E-value=8.4e-11  Score=113.37  Aligned_cols=160  Identities=13%  Similarity=0.035  Sum_probs=92.7

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeec--CeeEEEEEcccceeccCCceeeEEeecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFE--HLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~i~d~~~~~~~~~~~~~gei~~g~~~~~gY~  258 (365)
                      ......+..+++. ||+||++.. .     .|..  ..|..++  ++.++|+|++++++.+. ++.||++     .....
T Consensus       223 ~ie~~~g~~v~~~-YG~TE~~~~-~-----~c~~--~~g~h~~~d~~~vEIvDp~~~~~vp~-Ge~GELv-----vT~L~  287 (445)
T TIGR03335       223 YVEELWGCEVYNT-YGSTEGTMC-G-----ECQA--VAGLHVPEDLVHLDVYDPRHQRFLPD-GECGRIV-----LTTLL  287 (445)
T ss_pred             HHHHHhCCcEEec-CChhhhhhe-E-----EecC--CCCccccCCceEEEEEcCCCCCCCcC-CCceEEE-----EEecC
Confidence            3344557888888 999998522 1     1111  1144443  68899999887765543 5778872     12222


Q ss_pred             CCCcccc-cccCCCCeeecCceEEEcc-C----C----cEEEEeecCceEEeCceEeChHHHHHHHHcC---CCeeEEEE
Q psy13046        259 GLPARVK-APDRKKCSQRPRYQFVLRE-D----G----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTH---PNVLEAYA  325 (365)
Q Consensus       259 ~~~~~~~-~~~~~~g~~~TGD~~~~~~-~----G----~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~---~~v~~~~v  325 (365)
                      +...... -.++    |+|||++++.. +    |    .+...||.|||++++|.+|+|.+||++|.++   +++....-
T Consensus       288 ~~~~r~~~PliR----YrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~  363 (445)
T TIGR03335       288 KPGERCGSLLIN----YDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYE  363 (445)
T ss_pred             CCCccCCceEEE----eecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEE
Confidence            2100010 1124    89999998632 2    2    2445799999999999999999999999994   66543232


Q ss_pred             EeecCC-CCCcEEEEEEEEcCCCCCCHHHHHHHHH
Q psy13046        326 YGVPDE-RMGEEVGISIKLKENAKLNADDIRTFCK  359 (365)
Q Consensus       326 ~~~~~~-~~g~~~~a~v~~~~~~~~~~~~l~~~~~  359 (365)
                      +..... .....+...|...++...+.+++.+.+.
T Consensus       364 ~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~  398 (445)
T TIGR03335       364 AFLYGEEEGEITLRVSLECEDKDNCSIHDIQENFT  398 (445)
T ss_pred             EEEecCCCCCceEEEEEEecCcccchHHHHHHHHH
Confidence            222222 2222455556655433223334433333

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.16  E-value=6.4e-10  Score=103.59  Aligned_cols=144  Identities=20%  Similarity=0.172  Sum_probs=96.6

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEee--cCeeEEEEEcccceeccCCceeeEEeecCcccccccC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIF--EHLFLELVLYIVNSVLYNFKWINQVSSQTMAMKSKRG  259 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~i~d~~~~~~~~~~~~~gei~~g~~~~~gY~~  259 (365)
                      .....|...+.. ||+||.....    ...|....  |-.+  ++.-++|+||++++..++ +..||++-.. +.    +
T Consensus       230 ie~~~g~~~~di-YGltE~~g~g----~~eC~~~~--glhi~eD~~~~Ei~dP~t~e~l~d-ge~GelV~T~-L~----~  296 (438)
T COG1541         230 IENRFGCKAFDI-YGLTEGFGPG----AGECTERN--GLHIWEDHFIFEIVDPETGEQLPD-GERGELVITT-LT----K  296 (438)
T ss_pred             HHHHhCCceeec-cccccccCCc----cccccccc--CCCcchhhceeeeecCCcCccCCC-CCeeEEEEEe-cc----c
Confidence            345566666888 9999994431    12222222  3322  378899999999888887 5667763222 11    1


Q ss_pred             CCcccccccCCCCeeecCceEEEccC----C-----cEEEEeecCceEEeCceEeChHHHHHHHHcCCCee-EEEEEeec
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLRED----G-----YGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL-EAYAYGVP  329 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~----G-----~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~-~~~v~~~~  329 (365)
                         ...-.++    |+|||+..+.++    |     .-.|.||.||+++++|.+|+|..||++|.+.+.+. +--++-..
T Consensus       297 ---~~~PlIR----YrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~  369 (438)
T COG1541         297 ---EGMPLIR----YRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR  369 (438)
T ss_pred             ---cCcceEE----EEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec
Confidence               1111123    999999999763    3     24799999999999999999999999999999999 33333333


Q ss_pred             CCCCCcEEEEEEEEcCC
Q psy13046        330 DERMGEEVGISIKLKEN  346 (365)
Q Consensus       330 ~~~~g~~~~a~v~~~~~  346 (365)
                       ...-..+.+-|++.+.
T Consensus       370 -~~~~d~L~V~vE~~~~  385 (438)
T COG1541         370 -NGGLDELTVRVELENE  385 (438)
T ss_pred             -CCCCceEEEEEEecCc
Confidence             3344567777777654

>KOG1178|consensus

Probab=99.09  E-value=5.3e-10  Score=114.01  Aligned_cols=95  Identities=20%  Similarity=0.246  Sum_probs=86.7

Q ss_pred             CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCC-
Q psy13046        271 KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL-  349 (365)
Q Consensus       271 ~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~-  349 (365)
                      +..|+|||.|+.-.+|.+.|.||.|++||.+|.|+.+.||+.++..||.|.++.+....+...++.+.+||+...+... 
T Consensus       453 ~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~  532 (1032)
T KOG1178|consen  453 ARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV  532 (1032)
T ss_pred             hhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch
Confidence            4589999999988899999999999999999999999999999999999999999999998889999999998875443 


Q ss_pred             CHHHHHHHHHcccCCC
Q psy13046        350 NADDIRTFCKGKVSKF  365 (365)
Q Consensus       350 ~~~~l~~~~~~~l~~y  365 (365)
                      ....|++++.++|++|
T Consensus       533 ~~~~i~~~l~~~La~y  548 (1032)
T KOG1178|consen  533 LIRDIRNYLKKELASY  548 (1032)
T ss_pred             hHHHHHHhhcccccce
Confidence            3468999999999987

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=98.75  E-value=9.8e-09  Score=98.10  Aligned_cols=60  Identities=23%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             eccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEEC
Q psy13046         10 ANQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRG   69 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~   69 (365)
                      .+++++++.||++++++..+.+|++..      | +.+||+|||++++|+||++++.||.||+||++
T Consensus       351 ~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  351 GEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             SSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccccccccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            345677889999999999999999862      3 34799999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.71  E-value=2.7e-08  Score=70.50  Aligned_cols=51  Identities=37%  Similarity=0.639  Sum_probs=46.9

Q ss_pred             HHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        309 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       309 eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |||++|.+||+|.+|+|++.+++..|+.++|||++      +.++|+++++++|++|
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~   51 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPY   51 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GG
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCc
Confidence            79999999999999999999999999999999998      4489999999999986

...

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=98.56  E-value=1.9e-06  Score=80.69  Aligned_cols=101  Identities=20%  Similarity=0.341  Sum_probs=76.2

Q ss_pred             eeeccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecCC---------cEEEEeecCcEEEECCEEechHhH
Q psy13046          8 AIANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDG---------YGQVVGRIKDMIIRGGENIYPKEI   78 (365)
Q Consensus         8 ~~~~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~g---------~~~i~GR~~d~i~~~G~~v~p~~i   78 (365)
                      -..+.+++|+.||+.++.-..      ......-|+|||++.+.++-         ...|.||.+||+++.|.+|+|..|
T Consensus       276 ~t~e~l~dge~GelV~T~L~~------~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~i  349 (438)
T COG1541         276 ETGEQLPDGERGELVITTLTK------EGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQI  349 (438)
T ss_pred             CcCccCCCCCeeEEEEEeccc------cCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHH
Confidence            344567888899999987542      12234458999999998742         346999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCC
Q psy13046         79 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN  114 (365)
Q Consensus        79 e~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~  114 (365)
                      |.++.+.+.+..-..+-+.+....+.+.+.|++.+.
T Consensus       350 e~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~  385 (438)
T COG1541         350 ERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENE  385 (438)
T ss_pred             HHHHhcccCCCceEEEEEecCCCCceEEEEEEecCc
Confidence            999999999994444444334456677788887754

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.50  E-value=7.7e-07  Score=62.94  Aligned_cols=73  Identities=30%  Similarity=0.383  Sum_probs=58.3

Q ss_pred             hHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         77 EIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        77 ~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      |||+++.+||.|.+++|++++++..++.+++++++      +.+++.+++++.++.+..+..  +.-..+.+.+|++.+|
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~--~~~v~~~~~lP~t~~G   72 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRDKLPPYMVPRR--IRFVRLDEELPRTPSG   72 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHHHS-GGGS-SE--EEEEEESSSEEBETTS
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhhhCCCcceeeE--EEEccccCcCCCCCCC
Confidence            79999999999999999999998889999999988      348899999999988887742  2333344559998887


Q ss_pred             e
Q psy13046        157 S  157 (365)
Q Consensus       157 k  157 (365)
                      |
T Consensus        73 K   73 (73)
T PF13193_consen   73 K   73 (73)
T ss_dssp             S
T ss_pred             C
Confidence            6

...

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.39  E-value=2.9e-06  Score=82.00  Aligned_cols=117  Identities=14%  Similarity=0.057  Sum_probs=73.4

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEec-CC--------cEEEEeecCcEEEECCEEechHhHHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRE-DG--------YGQVVGRIKDMIIRGGENIYPKEIEEF   81 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~-~g--------~~~i~GR~~d~i~~~G~~v~p~~ie~~   81 (365)
                      .++++|+.||+.+++-.....  +..+...-|+|||++++.. +.        .+...||.|||++++|.||+|.+||++
T Consensus       271 ~~vp~Ge~GELvvT~L~~~~~--r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~  348 (445)
T TIGR03335       271 RFLPDGECGRIVLTTLLKPGE--RCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERA  348 (445)
T ss_pred             CCCcCCCceEEEEEecCCCCc--cCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHH
Confidence            456788999999988543110  0011223479999999732 22        133469999999999999999999999


Q ss_pred             Hhc---CCCcceEEEEEeeCCC-CCceEEEEEEEcCCCCCCHHHHHHHHHhh
Q psy13046         82 IQT---HPNVLEAYAYGVPDER-MGEEVGISIKLKENAKLNADDIRTFCKGK  129 (365)
Q Consensus        82 l~~---~~~V~~~~v~~vp~~~-~~~~~~~~v~~~~~~~~~~~~L~~~l~~~  129 (365)
                      |.+   ++.+...+-+.+.+.. ..+.+...|+..+......+++.+.+.+.
T Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~~~~~~~~~~~~~  400 (445)
T TIGR03335       349 VFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDKDNCSIHDIQENFTGT  400 (445)
T ss_pred             HhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCcccchHHHHHHHHHHH
Confidence            999   4666544444443332 23355566666554333344444444443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178|consensus

Probab=98.34  E-value=2.2e-06  Score=88.17  Aligned_cols=113  Identities=17%  Similarity=0.171  Sum_probs=91.8

Q ss_pred             cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC-H
Q psy13046         41 PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-A  119 (365)
Q Consensus        41 ~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~-~  119 (365)
                      .|+|||+++...+|.+.|.||.|++||.+|.++...+++..+..||.|.++...+..+...++.+.++++.....+.+ .
T Consensus       455 ~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~  534 (1032)
T KOG1178|consen  455 IYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVLI  534 (1032)
T ss_pred             cccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchhH
Confidence            499999999999999999999999999999999999999999999999999999999988888999999887764433 3


Q ss_pred             HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046        120 DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus       120 ~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ..+..++...++.++-+     ........+|.+.+||+
T Consensus       535 ~~i~~~l~~~La~y~vP-----s~~V~l~~vPl~~~GKv  568 (1032)
T KOG1178|consen  535 RDIRNYLKKELASYMLP-----SLVVPLAKVPLNPNGKV  568 (1032)
T ss_pred             HHHHHhhcccccceecc-----eEEEEhhhCCcCCCCCc
Confidence            45666666665555444     23334556777777777

>PTZ00297 pantothenate kinase; Provisional

Probab=98.13  E-value=9.2e-06  Score=87.66  Aligned_cols=79  Identities=11%  Similarity=0.116  Sum_probs=63.4

Q ss_pred             CceEEEEecCchhhhhhcccccccEecCce-EEEecCCcEEEEeecCcEEE-ECCEEechHhHHHHHhcCCCcceEEEEE
Q psy13046         18 KKAIHFRHFDSFLLFVELCLLLFPFLSRDQ-FVLREDGYGQVVGRIKDMII-RGGENIYPKEIEEFIQTHPNVLEAYAYG   95 (365)
Q Consensus        18 ~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl-~~~~~~g~~~i~GR~~d~i~-~~G~~v~p~~ie~~l~~~~~V~~~~v~~   95 (365)
                      +||+.+++.       +     -|..|.+. +.+++||+++|+||+||+|+ .+|++|+|+.||+.+..+|.|.+++|+|
T Consensus       825 ~GEIlvr~~-------k-----dpe~T~e~~~gW~~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~G  892 (1452)
T PTZ00297        825 IGQLVLAKK-------G-----EPRRTLPIAAQWKRDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYA  892 (1452)
T ss_pred             CCeEEEEEC-------C-----ChHHHHHhhCcCccCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEe
Confidence            688888653       1     12345554 24557999999999999999 9999999999999999999999999999


Q ss_pred             eeCCCCCceEEEEEEEc
Q psy13046         96 VPDERMGEEVGISIKLK  112 (365)
Q Consensus        96 vp~~~~~~~~~~~v~~~  112 (365)
                      ..++    .+.|.|+++
T Consensus       893 d~~k----~lvALVvpd  905 (1452)
T PTZ00297        893 DPSR----PIIAIVSPN  905 (1452)
T ss_pred             cCCC----ceEEEEEeC
Confidence            8653    267777765

>KOG3628|consensus

Probab=98.05  E-value=3e-05  Score=78.66  Aligned_cols=121  Identities=13%  Similarity=0.104  Sum_probs=93.5

Q ss_pred             eEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc-cccc---------CCCCeeecCceEEEcc---
Q psy13046        219 LHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV-KAPD---------RKKCSQRPRYQFVLRE---  284 (365)
Q Consensus       219 G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~-~~~~---------~~~g~~~TGD~~~~~~---  284 (365)
                      |...+++++.|++|++...... ++.||| +.+.+-+.+|++-.+.. ...|         ...+|-||||+|++..   
T Consensus      1156 G~~~~~~~i~IvnPEtk~pc~d-ge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~ 1234 (1363)
T KOG3628|consen 1156 GKLPVYTDIAIVNPETKGPCRD-GELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSL 1234 (1363)
T ss_pred             CcccccceeEEeCCcccccccc-CCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeec
Confidence            8888899999999988766655 688998 99998888887642221 1111         1246999999999732   


Q ss_pred             ---C----CcEEEEeecCceEEeCceEeChHHHHHHHHc-CCCeeEEEEEeecCCCCCcEEEEEEEEcC
Q psy13046        285 ---D----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT-HPNVLEAYAYGVPDERMGEEVGISIKLKE  345 (365)
Q Consensus       285 ---~----G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~-~~~v~~~~v~~~~~~~~g~~~~a~v~~~~  345 (365)
                         .    .-||++|-.++.+-++|.+-+|.+||+.+.. ||.|..|+|+-...     .++.+++...
T Consensus      1235 t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~g 1298 (1363)
T KOG3628|consen 1235 TDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHG 1298 (1363)
T ss_pred             ccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecC
Confidence               2    2589999999999999999999999999976 99999999986533     4666666554

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=97.96  E-value=8.7e-05  Score=70.85  Aligned_cols=117  Identities=19%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeec-CeeEE--EEEcccceeccCCceeeEEeecCcccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFE-HLFLE--LVLYIVNSVLYNFKWINQVSSQTMAMKSK  257 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~--i~d~~~~~~~~~~~~~gei~~g~~~~~gY  257 (365)
                      ......|.++... ||+|| +.+..     .|..+ . -+..+ .+-++  ++|+++..++              +.+.+
T Consensus       231 ~Ie~~fg~~V~~~-YG~tE-g~la~-----eC~~g-~-lHl~ed~~~vE~~ivD~~~~~~~--------------ViT~L  287 (430)
T TIGR02304       231 LIRNVFKNTVHQI-YQATE-GFLAS-----TCRCG-T-LHLNEDLVHIEKQYLDEHKRFVP--------------IITDF  287 (430)
T ss_pred             HHHHHhCCCeeEc-cCCch-hheEE-----ecCCC-C-EEEccccEEEEeeEECCCCceEE--------------EEecC
Confidence            3444556778888 99999 43322     22111 1 34444 33444  7886542211              33344


Q ss_pred             cCCCcccccccCCCCeeecCceEEEccC----Cc----E-EEEeecCceEEe---Cc--eEeChHHHHHHHH-cCCCeeE
Q psy13046        258 RGLPARVKAPDRKKCSQRPRYQFVLRED----GY----G-QVVGRIKDMIIR---GG--ENIYPKEIEEFIQ-THPNVLE  322 (365)
Q Consensus       258 ~~~~~~~~~~~~~~g~~~TGD~~~~~~~----G~----l-~i~GR~~d~i~~---~G--~~v~~~eiE~~l~-~~~~v~~  322 (365)
                      .+.-   ...++    |+|||++...++    |.    + .|.||.+|++++   +|  .+|+|..+++++. ..+.|.+
T Consensus       288 ~n~~---~PlIR----YrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~  360 (430)
T TIGR02304       288 TRTT---QPIVR----YRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVE  360 (430)
T ss_pred             CCcc---ceEEe----eeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCce
Confidence            3321   11124    899999887543    32    3 489999999986   34  4469999998855 5788888


Q ss_pred             EEEEe
Q psy13046        323 AYAYG  327 (365)
Q Consensus       323 ~~v~~  327 (365)
                      .-++-
T Consensus       361 yQi~Q  365 (430)
T TIGR02304       361 YRVLQ  365 (430)
T ss_pred             EEEEE
Confidence            76664

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.87  E-value=2.2e-05  Score=79.59  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=68.4

Q ss_pred             eccCCCCCCceEEEEecCchhhhhhcc------ccc-ccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHH
Q psy13046         10 ANQHSSRQKKAIHFRHFDSFLLFVELC------LLL-FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI   82 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~-~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l   82 (365)
                      .+.++.+..||+++.|....++|++..      |.. .+|+|||+++...||.+.+.||.|+.+|++|.+|.+.+||..+
T Consensus       559 ~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l  638 (642)
T COG1020         559 LRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAAL  638 (642)
T ss_pred             CCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHHHHH
Confidence            356677888999999999999998773      333 3899999999999999999999999999999999999999999


Q ss_pred             hcCC
Q psy13046         83 QTHP   86 (365)
Q Consensus        83 ~~~~   86 (365)
                      ..+|
T Consensus       639 ~~~~  642 (642)
T COG1020         639 AEQP  642 (642)
T ss_pred             hcCC
Confidence            8875

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=97.30  E-value=0.0018  Score=48.29  Aligned_cols=82  Identities=18%  Similarity=0.301  Sum_probs=54.2

Q ss_pred             CEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCC---CHHHHHHHHHhhhhhcccceEEEeeeEEe
Q psy13046         70 GENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL---NADDIRTFCKGKVKRKISCIFIIIVRISC  146 (365)
Q Consensus        70 G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~---~~~~L~~~l~~~l~~~~~~~~~~~~~~~~  146 (365)
                      |.||||++||+++.++|.+...+.+.+.+....+.+...|++.++...   ..+++.+.+++.+...+.....+  .+.-
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~~V--~lv~   78 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRPEV--ELVP   78 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-EEE--EEE-
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceEEE--EEEC
Confidence            789999999999999999997776667665567778888888875432   24677777777777766665422  2223


Q ss_pred             eeccccc
Q psy13046        147 ECILLKY  153 (365)
Q Consensus       147 ~~~l~~~  153 (365)
                      +..+|++
T Consensus        79 ~gtLpr~   85 (96)
T PF14535_consen   79 PGTLPRS   85 (96)
T ss_dssp             TT-S---
T ss_pred             CCCccCC
Confidence            3456665

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.80  E-value=0.0045  Score=46.13  Aligned_cols=46  Identities=28%  Similarity=0.514  Sum_probs=36.0

Q ss_pred             ceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCC
Q psy13046        302 GENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA  347 (365)
Q Consensus       302 G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~  347 (365)
                      |.+|+|.+||++|.++|++.....+.+......+.+...|.++++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~   46 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF   46 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc
Confidence            7899999999999999999955555555555667788888888754

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=96.70  E-value=0.011  Score=58.39  Aligned_cols=88  Identities=10%  Similarity=0.063  Sum_probs=57.4

Q ss_pred             eecCceEEEcc--CC--cEEEEeecCceEEeCceEeChHHHHHHHHcC-----CCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        274 QRPRYQFVLRE--DG--YGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-----PNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       274 ~~TGD~~~~~~--~G--~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~-----~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      |+.||+.++..  ++  .+.|+||.+.++++.|++++-.+|++++.+.     -.+.+-++.+.........-..++++.
T Consensus       371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~  450 (528)
T PF03321_consen  371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE  450 (528)
T ss_dssp             EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred             eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence            88999999843  33  6999999999999999999999999999874     345677776663222223455666665


Q ss_pred             CCCCCCHHHHHHHHHccc
Q psy13046        345 ENAKLNADDIRTFCKGKV  362 (365)
Q Consensus       345 ~~~~~~~~~l~~~~~~~l  362 (365)
                      .. ..+.+++.+.+.+.|
T Consensus       451 ~~-~~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  451 GE-PDDLEELAKALDESL  467 (528)
T ss_dssp             S--HHHHHHHHHHHHHCS
T ss_pred             CC-chHHHHHHHHHHHHh
Confidence            53 123345566665555

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>KOG3628|consensus

Probab=95.97  E-value=0.034  Score=57.38  Aligned_cols=110  Identities=16%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             ceeeEeecC-eeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcccccccCC------------CCeeecCceEE
Q psy13046        216 QVVLHIFEH-LFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKAPDRK------------KCSQRPRYQFV  281 (365)
Q Consensus       216 ~~~G~~~~~-~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~~------------~g~~~TGD~~~  281 (365)
                      .-+|...|+ +.+-+++ ++....+....+||| +.++++..+||.-+..|...|..            ..|.|||=+|+
T Consensus       502 kd~~~i~~g~~t~~vv~-~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGF  580 (1363)
T KOG3628|consen  502 KDVLCIMPGDATLAVVN-PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGF  580 (1363)
T ss_pred             cccceecccceEEEEeC-CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceee
Confidence            346777774 4555566 455556667899999 99999999999998888877721            24899999999


Q ss_pred             EccCCcEEEEeecCceEE-eCceEeChHH----------HHHHHHcCCCeeEEEEEe
Q psy13046        282 LREDGYGQVVGRIKDMII-RGGENIYPKE----------IEEFIQTHPNVLEAYAYG  327 (365)
Q Consensus       282 ~~~~G~l~i~GR~~d~i~-~~G~~v~~~e----------iE~~l~~~~~v~~~~v~~  327 (365)
                      +. .|.++++|-++|++- ..|.+.+..+          |+.+.+..+.|.++.++-
T Consensus       581 v~-~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~  636 (1363)
T KOG3628|consen  581 VH-NGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE  636 (1363)
T ss_pred             ee-CCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee
Confidence            96 555666665555555 7887776555          445555677888888875

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=94.73  E-value=0.5  Score=47.25  Aligned_cols=43  Identities=5%  Similarity=-0.004  Sum_probs=38.1

Q ss_pred             eecCceEEEccC----CcEEEEeecCceEEeCceEeChHHHHHHHHc
Q psy13046        274 QRPRYQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  316 (365)
Q Consensus       274 ~~TGD~~~~~~~----G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~  316 (365)
                      |+.||..++..-    -.|.|+||.+.++++.|++++-.+++.++.+
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            789999998532    3689999999999999999999999998877

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=93.40  E-value=0.37  Score=47.64  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             EecCceEEEec--CC--cEEEEeecCcEEEECCEEechHhHHHHHhcC---CCc--ceEEEEEeeCCCCCceEEEEEEEc
Q psy13046         42 FLSRDQFVLRE--DG--YGQVVGRIKDMIIRGGENIYPKEIEEFIQTH---PNV--LEAYAYGVPDERMGEEVGISIKLK  112 (365)
Q Consensus        42 ~~tgDl~~~~~--~g--~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~---~~V--~~~~v~~vp~~~~~~~~~~~v~~~  112 (365)
                      |+.||+++...  ++  .+.|+||.+.++++.|++++-.++..++.+.   .++  .+..+...+..........++++.
T Consensus       371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~  450 (528)
T PF03321_consen  371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE  450 (528)
T ss_dssp             EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred             eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence            79999999754  33  6899999999999999999999999999875   233  344444442222334455666665


Q ss_pred             CCCCCCHHHHHHHHHhhh
Q psy13046        113 ENAKLNADDIRTFCKGKV  130 (365)
Q Consensus       113 ~~~~~~~~~L~~~l~~~l  130 (365)
                      .. ..+.+.+.+.+.+.+
T Consensus       451 ~~-~~~~~~~~~~lD~~L  467 (528)
T PF03321_consen  451 GE-PDDLEELAKALDESL  467 (528)
T ss_dssp             S--HHHHHHHHHHHHHCS
T ss_pred             CC-chHHHHHHHHHHHHh
Confidence            43 112334444454444

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=91.32  E-value=0.38  Score=46.19  Aligned_cols=55  Identities=22%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             cEecCceEEEecCC----c----E-EEEeecCcEEEE-----CCEEechHhHHHHHh-cCCCcceEEEEE
Q psy13046         41 PFLSRDQFVLREDG----Y----G-QVVGRIKDMIIR-----GGENIYPKEIEEFIQ-THPNVLEAYAYG   95 (365)
Q Consensus        41 ~~~tgDl~~~~~~g----~----~-~i~GR~~d~i~~-----~G~~v~p~~ie~~l~-~~~~V~~~~v~~   95 (365)
                      -|+|||++...++.    .    + .|.||.+|+++.     ++.+++|..++.++. ..+.|.+..++-
T Consensus       296 RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q  365 (430)
T TIGR02304       296 RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQ  365 (430)
T ss_pred             eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEE
Confidence            49999998875542    1    2 488999999985     345569999988744 578888776664

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=89.07  E-value=1.4  Score=44.01  Aligned_cols=43  Identities=7%  Similarity=0.030  Sum_probs=37.5

Q ss_pred             eecCceEEE----ccCCcEEEEeecCceEEeCceEeChHHHHHHHHc
Q psy13046        274 QRPRYQFVL----REDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  316 (365)
Q Consensus       274 ~~TGD~~~~----~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~  316 (365)
                      ||.||+.++    +..-.|.|++|.+.+..+.|.|.+-.++-+++.+
T Consensus       417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~  463 (606)
T PLN02247        417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQ  463 (606)
T ss_pred             EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHH
Confidence            789999887    3345799999999999999999999999888876

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=87.37  E-value=2  Score=42.95  Aligned_cols=43  Identities=7%  Similarity=0.016  Sum_probs=37.1

Q ss_pred             eecCceEEEc----cCCcEEEEeecCceEEeCceEeChHHHHHHHHc
Q psy13046        274 QRPRYQFVLR----EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  316 (365)
Q Consensus       274 ~~TGD~~~~~----~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~  316 (365)
                      |+.||+.++.    ..-.|.|++|.+-+..+.|.|.+-.++-.++.+
T Consensus       423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~  469 (612)
T PLN02620        423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN  469 (612)
T ss_pred             EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence            7899998873    334799999999999999999999998887765

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=86.93  E-value=1.4  Score=41.34  Aligned_cols=92  Identities=12%  Similarity=-0.059  Sum_probs=50.3

Q ss_pred             CccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccccc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARVKA  266 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~~~  266 (365)
                      ..+... |||||...........        -.+.|.. +.|.|+++-...+. +..|.| +-.+.. ..|         
T Consensus       258 ~~i~~~-ygmtEl~s~~~~~~~~--------~~~~p~w-V~iRDp~tl~~~~~-Ge~Gli~vidl~~-~s~---------  316 (365)
T PF04443_consen  258 ENIYDM-YGMTELNSQAYECGHG--------HFHVPPW-VIIRDPETLEPLPP-GETGLIQVIDLAN-TSY---------  316 (365)
T ss_pred             HHeeee-eeccccchhheeCCCC--------cccCCCe-EEEECCCCCcCCCC-CCeeEEEEEcccc-cCC---------
Confidence            456677 9999975322211110        1123322 66668876554444 556665 322211 111         


Q ss_pred             ccCCCCeeecCceEEEccC--------CcEEEEeecCceEEeCceEe
Q psy13046        267 PDRKKCSQRPRYQFVLRED--------GYGQVVGRIKDMIIRGGENI  305 (365)
Q Consensus       267 ~~~~~g~~~TGD~~~~~~~--------G~l~i~GR~~d~i~~~G~~v  305 (365)
                          -+..-|.|+|.+..+        .++.++||.+. -.++|...
T Consensus       317 ----p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~-ae~RGCs~  358 (365)
T PF04443_consen  317 ----PGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG-AEIRGCSL  358 (365)
T ss_pred             ----CcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC-CccCCcHH
Confidence                344679999987554        27999999873 23455443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-12
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-12
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-12
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		3e-12
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-12
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		3e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		1e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		3e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-12
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		3e-12
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		9e-12
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		2e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		3e-10
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		8e-10
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		7e-08
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		8e-08
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-07
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-07
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		3e-07
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		4e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		8e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-06
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-06
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		1e-06
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-06
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-06
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		5e-06
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		5e-06
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		7e-06
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-05
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		3e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		3e-05
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		7e-05
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		7e-05
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		7e-05
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		8e-05
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-04
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-04
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-04
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-04
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-04

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
            V   +  +    L+AD + TFC+
Sbjct: 443 SVTACVVPRLGETLSADALDTFCR 466

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   +  +
Sbjct: 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451
Query: 345 ENAKLNADDIRTFCK 359
               L+AD + TFC+
Sbjct: 452 LGETLSADALDTFCR 466

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
            V   +  +    L+AD + TFC+
Sbjct: 443 SVTACVVPRLGETLSADALDTFCR 466

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   +  +
Sbjct: 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451
Query: 345 ENAKLNADDIRTFCK 359
               L+AD + TFC+
Sbjct: 452 LGETLSADALDTFCR 466

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
            V   +  +    L+AD + TFC+
Sbjct: 443 SVTACVVPRLGETLSADALDTFCR 466

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   +  +
Sbjct: 392 EGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451
Query: 345 ENAKLNADDIRTFCK 359
               L+AD + TFC+
Sbjct: 452 LGETLSADALDTFCR 466

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
            V   +  +    L+AD + TFC+
Sbjct: 443 SVTACVVPRLGETLSADALDTFCR 466

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   +  +
Sbjct: 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451
Query: 345 ENAKLNADDIRTFCK 359
               L+AD + TFC+
Sbjct: 452 LGETLSADALDTFCR 466

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
            V   +  +    L+AD + TFC+
Sbjct: 443 SVTACVVPRLGETLSADALDTFCR 466

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   +  +
Sbjct: 392 EGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451
Query: 345 ENAKLNADDIRTFCK 359
               L+AD + TFC+
Sbjct: 452 LGETLSADALDTFCR 466

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D  V   +G  +++GR+ D II GGENI+P EIE  + T P V E    G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
            V   +  +    L+AD + TFC+
Sbjct: 443 SVTACVVPRLGETLSADALDTFCR 466

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +G  +++GR+ D II GGENI+P EIE  + T P V E    G+ D+R G+ V   +  +
Sbjct: 392 EGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451
Query: 345 ENAKLNADDIRTFCK 359
               L+AD + TFC+
Sbjct: 452 LGETLSADALDTFCR 466

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           + ++GY  +  R+KDMII GGEN+YP EIE  I   P V E    G+PDE+ G E+  +I
Sbjct: 400 IDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG-EIAAAI 458
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
            + +  +++   I  +C  +++++
Sbjct: 459 VVADQNEVSEQQIVEYCGTRLARY 482

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 265 KAPDRKKCSQRPRYQFV------LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 318
           + P++ K   R    F+      + E GY  ++GR KD++I GG N+YPKEIE  I   P
Sbjct: 363 RXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXP 422
Query: 319 NVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF 365
            V+E+   GVP    GE V   +   + A ++   +     G+++KF
Sbjct: 423 GVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKF 469

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           + E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP    GE V   +
Sbjct: 386 IDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVV 445
Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
                A ++   +     G+++ F
Sbjct: 446 VRDXGATIDEAQVLHGLDGQLAXF 469

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           + E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP    GE V   +
Sbjct: 386 IDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFV 445
Query: 342 KLKEN---AKLNADDIRTFCKGKVSKF 365
            L      +++ A+++  F   +++ F
Sbjct: 446 VLXREFAPSEILAEELXAFVXDRLAXF 472

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 53  DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
           DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+
Sbjct: 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK 480

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 336
           DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+
Sbjct: 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK 480

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 285 DGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK 342
           DGY    GR   K++I  GGEN+YP E+E  ++ HP + +A   GVPD +  E +     
Sbjct: 388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCV 447
Query: 343 LKENAKLNADDIRTFCKGKVSKF 365
            K    + AD +  F    ++++
Sbjct: 448 CKPGESIAADALAEFVASLIARY 470

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D   + E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP    GE
Sbjct: 380 TGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGE 439
Query: 104 EV 105
            V
Sbjct: 440 GV 441

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
           + E GY  ++GR  D++I GG N+YP EIE  I   P V+E+   GVP    GE V
Sbjct: 386 IDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGV 441

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           S D   +  +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE
Sbjct: 415 SGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGE 474
Query: 104 EVGISIKLKENAKLNADDIRTFCK 127
           +    + +KE   L A  +R F +
Sbjct: 475 KSCAYLVVKE--PLRAVQVRRFLR 496

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 285 DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK 344
           +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE+    + +K
Sbjct: 424 EGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK 483
Query: 345 ENAKLNADDIRTFCK 359
           E   L A  +R F +
Sbjct: 484 E--PLRAVQVRRFLR 496

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476
Query: 110 KLKENAKLNADDIRTFCK 127
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFI 476
Query: 342 KLKENAKLNADDIRTFCK 359
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 109
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A     PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI 476
Query: 110 KLKENAKLNADDIRTFCK 127
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A     PD+ +GE   + I
Sbjct: 417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFI 476
Query: 342 KLKENAKLNADDIRTFCK 359
             ++ A   A +++ F +
Sbjct: 477 IPRDEAP-KAAELKAFLR 493

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 50  LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           +  +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 335
           +  +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           +DGY  +V R+K +I   G  + P E+E  +  HP + +A   G+PD   GE     + L
Sbjct: 463 KDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVL 522
Query: 344 KENAKLNADDIRTFCKGKVS 363
           +E   +   ++  +  G+V+
Sbjct: 523 EEGKTMTEQEVMDYVAGQVT 542

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 44  SRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE 103
           + D   + EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+
Sbjct: 456 TGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQ 515
Query: 104 EVGISIKLKEN 114
            +  +I L ++
Sbjct: 516 VIKATIVLTKD 526

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 282 LREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
           + EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+ +  +I
Sbjct: 462 MDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATI 521
Query: 342 KLKEN 346
            L ++
Sbjct: 522 VLTKD 526

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 264 VKAPDRKKCSQRPRYQF-----VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 318
           V  PD+   + R  +       +  EDGY Q +GR  D+I   G  I P E+E  +  HP
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479
Query: 319 NVLEAYAYGVPDERMGEEV 337
            V+E      PD   GE V
Sbjct: 480 AVVETAVISSPDPVRGEVV 498

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVV 498

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 264 VKAPDRKKCSQRPRYQF-----VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHP 318
           V  PD+   + R  +       +  EDGY Q +GR  D+I   G  I P E+E  +  HP
Sbjct: 420 VDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479
Query: 319 NVLEAYAYGVPDERMGEEV 337
            V+E      PD   GE V
Sbjct: 480 AVVETAVISSPDPVRGEVV 498

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 344 KENAKLNADDIRTFCKGKVS 363
           +    +   +I  +   +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVT 507

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487
Query: 344 KENAKLNADDIRTFCKGKVS 363
           +    +   +I  +   +V+
Sbjct: 488 EHGKTMTEKEIVDYVASQVT 507

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 344 KENAKLNADDIRTFCKGKVS 363
           +    +   +I  +   +V+
Sbjct: 493 EHGKTMTEKEIVDYVASQVT 512

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 46  DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
           D  V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE 
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447
Query: 105 V 105
           +
Sbjct: 448 I 448

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 285 DGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
           DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE +
Sbjct: 395 DGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERI 448

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 433 EDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 492
Query: 344 KENAKLNADDIRTFCKGKVS 363
           +    +   +I  +   +V+
Sbjct: 493 EHGKTMTEKEIVDYVASQVT 512

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 349
           +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L+    +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 350 NADDIRTFCKGKVS 363
              ++  +   +VS
Sbjct: 496 TEKEVMDYVASQVS 509

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 349
           +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L+    +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 350 NADDIRTFCKGKVS 363
              ++  +   +VS
Sbjct: 496 TEKEVMDYVASQVS 509

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 349
           +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L+    +
Sbjct: 436 IVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNM 495
Query: 350 NADDIRTFCKGKVS 363
              ++  +   +VS
Sbjct: 496 TEKEVMDYVASQVS 509

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-35
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	7e-34
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	8e-35
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	8e-35
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-34
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-33
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	4e-34
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	4e-34
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-33
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-33
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-30
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-29
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-29
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-28
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	5e-29
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	8e-28
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-28
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	8e-28
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-25
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	8e-25
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-24
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-22
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-23
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-22
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-23
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-22
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	5e-23
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-22
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	7e-19
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-18
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	8e-19
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-17
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	6e-11
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	8e-11
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-10
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	7e-10
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-08
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-08
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	7e-08
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-05
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	1e-04
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	2e-05
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	8e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	8e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	2e-04
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	9e-05
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	3e-04
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-04
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	3e-04
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	2e-04
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	5e-04

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  133 bits (338), Expect = 5e-35
 Identities = 29/85 (34%), Positives = 42/85 (49%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
               DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+    
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           I  +          R   +  ++++
Sbjct: 485 IVSRNPELKAVVLRRHLMELGIAQY 509

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  130 bits (329), Expect = 7e-34
 Identities = 29/82 (35%), Positives = 39/82 (47%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
               DG  +VVGRIKD I RGGE I  +EIE+ I  HP V+ A    + DE+ GE+    
Sbjct: 425 QRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAF 484

Query: 109 IKLKENAKLNADDIRTFCKGKV 130
           I  +          R   +  +
Sbjct: 485 IVSRNPELKAVVLRRHLMELGI 506

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  133 bits (336), Expect = 8e-35
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
            L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + 
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475

Query: 109 IKLKENAKLNADDIRTFCKGK 129
           I  ++ A   A +++ F + +
Sbjct: 476 IIPRDEA-PKAAELKAFLRER 495

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  133 bits (336), Expect = 8e-35
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE   + 
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475

Query: 341 IKLKENAKLNADDIRTFCKGK 361
           I  ++ A   A +++ F + +
Sbjct: 476 IIPRDEA-PKAAELKAFLRER 495

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  131 bits (333), Expect = 1e-34
 Identities = 31/82 (37%), Positives = 46/82 (56%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E GY  ++GR KD++I GG N+YPKEIE  I   P V+E+   GVP    GE V   +  
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVR 447

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
            + A ++   +     G+++KF
Sbjct: 448 DKGATIDEAQVLHGLDGQLAKF 469

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  128 bits (325), Expect = 2e-33
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E GY  ++GR KD++I GG N+YPKEIE  I   P V+E+   GVP    GE V   +  
Sbjct: 388 ERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVR 447

Query: 112 KENAKLNADDIRTFCKGK 129
            + A ++   +     G+
Sbjct: 448 DKGATIDEAQVLHGLDGQ 465

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  130 bits (330), Expect = 4e-34
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
           V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447

Query: 109 IKLKENAKLNADDIRTFCKG 128
           +  +    L+AD + TFC+ 
Sbjct: 448 VVPRLGETLSADALDTFCRS 467

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  130 bits (330), Expect = 4e-34
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447

Query: 341 IKLKENAKLNADDIRTFCKG 360
           +  +    L+AD + TFC+ 
Sbjct: 448 VVPRLGETLSADALDTFCRS 467

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  129 bits (326), Expect = 3e-33
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
            +  +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE+    
Sbjct: 420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479

Query: 109 IKLKENAKLNADDIRTFCKGK 129
           + +KE  +  A  +R F + +
Sbjct: 480 LVVKEPLR--AVQVRRFLREQ 498

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  129 bits (326), Expect = 3e-33
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
            +  +GY  V GR KD I RGGE I  +EIE  +  HP V+ A    + DE MGE+    
Sbjct: 420 SIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAY 479

Query: 341 IKLKENAKLNADDIRTFCKGK 361
           + +KE  +  A  +R F + +
Sbjct: 480 LVVKEPLR--AVQVRRFLREQ 498

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  119 bits (301), Expect = 3e-30
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+   +    
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           + +  ++   +  +    ++K+
Sbjct: 447 ESD--ISKAQLIAYLSKHLAKY 466

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  117 bits (295), Expect = 3e-29
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
            +GY  +  R KD+II GGENIYP +IE   +  P + +A   G PD+  G+   +    
Sbjct: 387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS 446

Query: 112 KENAKLNADDIRTFCKGK 129
           + +  ++   +  +    
Sbjct: 447 ESD--ISKAQLIAYLSKH 462

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  116 bits (294), Expect = 3e-29
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 284 EDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI 341
            DGY    GR   K++I  GGEN+YP E+E  ++ HP + +A   GVPD +  E +    
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVC 446

Query: 342 KLKENAKLNADDIRTFCKGKVSKF 365
             K    + AD +  F    ++++
Sbjct: 447 VCKPGESIAADALAEFVASLIARY 470

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  114 bits (288), Expect = 2e-28
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 42  FLSRDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE 99
             + D      DGY    GR   K++I  GGEN+YP E+E  ++ HP + +A   GVPD 
Sbjct: 377 HHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDP 436

Query: 100 RMGEEVGISIKLKENAKLNADDIRTFCKGK 129
           +  E +      K    + AD +  F    
Sbjct: 437 QWSEAIKAVCVCKPGESIAADALAEFVASL 466

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  116 bits (293), Expect = 5e-29
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 281 VLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
           V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE +  
Sbjct: 391 VRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450

Query: 340 SIKLKE-NAKLNADDIRTFCKGKVSKF 365
            I   +  A      +      +++  
Sbjct: 451 WIVPADPAAPPALGTLADHVAARLAPH 477

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  113 bits (284), Expect = 8e-28
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 46  DQFVLREDGYGQVVGR-IKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
           D  V   DGY ++VGR   D+I  GG  I   EIE  +  HP V EA   G PD  +GE 
Sbjct: 388 DMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGER 447

Query: 105 VGISIKLKE-NAKLNADDIRTFCKGK 129
           +   I   +  A      +      +
Sbjct: 448 IVAWIVPADPAAPPALGTLADHVAAR 473

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  114 bits (289), Expect = 2e-28
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           ++GY  +  R+KDMII GGEN+YP EIE  I   P V E    G+PDE+ GE     +  
Sbjct: 402 DEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVA 461

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
            +  +++   I  +C  +++++
Sbjct: 462 DQ-NEVSEQQIVEYCGTRLARY 482

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  113 bits (284), Expect = 8e-28
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D   + ++GY  +  R+KDMII GGEN+YP EIE  I   P V E    G+PDE+ 
Sbjct: 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKW 451

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
           GE     +   +  +++   I  +C  +
Sbjct: 452 GEIAAAIVVADQ-NEVSEQQIVEYCGTR 478

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  106 bits (266), Expect = 2e-25
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+G+     R+K++I   G  I P E+E  +  H  V++    G PDE  GE     I L
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487

Query: 344 KEN--AKLNADDIRTFCKGKVSKF 365
           K     K++ +DI  + + ++S +
Sbjct: 488 KPEYRGKVDEEDIIEWVRERISGY 511

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  104 bits (262), Expect = 8e-25
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E+G+     R+K++I   G  I P E+E  +  H  V++    G PDE  GE     I L
Sbjct: 428 EEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVL 487

Query: 112 KEN--AKLNADDIRTFCKGKV 130
           K     K++ +DI  + + ++
Sbjct: 488 KPEYRGKVDEEDIIEWVRERI 508

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  101 bits (255), Expect = 5e-24
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
             S D++    +G     GR  DM+   G+ + P E+E  +  H  VLEA   GV     
Sbjct: 408 IRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG- 466

Query: 102 GEEVGISIKLKENAK---LNADDIRTFCKG-----KVKRKI 134
             +    + LK       + A++++ F K      K  R I
Sbjct: 467 LVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDI 507

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 98.0 bits (245), Expect = 1e-22
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 280 FVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI 339
           +    +G     GR  DM+   G+ + P E+E  +  H  VLEA   GV       +   
Sbjct: 414 YCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRA 472

Query: 340 SIKLKENAK---LNADDIRTFCKGKVSKF 365
            + LK       + A++++ F K +++  
Sbjct: 473 FVVLKREFAPSEILAEELKAFVKDRLAPH 501

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  100 bits (251), Expect = 2e-23
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           +D    +V R+K++I   G  + P E+E  +  HP + +A   G+ DE  GE     +  
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
            E ++   D+I+ +   +V  +
Sbjct: 483 SEKSQATEDEIKQYISKQVIFY 504

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 98.0 bits (245), Expect = 1e-22
 Identities = 21/79 (26%), Positives = 39/79 (49%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           +D    +V R+K++I   G  + P E+E  +  HP + +A   G+ DE  GE     +  
Sbjct: 423 DDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVK 482

Query: 112 KENAKLNADDIRTFCKGKV 130
            E ++   D+I+ +   +V
Sbjct: 483 SEKSQATEDEIKQYISKQV 501

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  100 bits (251), Expect = 2e-23
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           +    +   ++  +   +VS  
Sbjct: 490 ESGKNMTEKEVMDYVASQVSNA 511

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 21/79 (26%), Positives = 39/79 (49%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           E+ +  +V R+K +I   G  + P E+E  +  HP++ +A   GVPD   GE  G  + L
Sbjct: 430 EEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVL 489

Query: 112 KENAKLNADDIRTFCKGKV 130
           +    +   ++  +   +V
Sbjct: 490 ESGKNMTEKEVMDYVASQV 508

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 99.2 bits (248), Expect = 5e-23
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
           +    +   +I  +   +V+  
Sbjct: 488 EHGKTMTEKEIVDYVASQVTTA 509

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 96.5 bits (241), Expect = 4e-22
 Identities = 22/79 (27%), Positives = 39/79 (49%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     + L
Sbjct: 428 EDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL 487

Query: 112 KENAKLNADDIRTFCKGKV 130
           +    +   +I  +   +V
Sbjct: 488 EHGKTMTEKEIVDYVASQV 506

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 19/82 (23%), Positives = 42/82 (51%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           +D    +V R+K++I   G  + P E+E  +  HP++ +     + +E  GE     +  
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529

Query: 344 KENAKLNADDIRTFCKGKVSKF 365
            ++++L+ DD++ F   +V  +
Sbjct: 530 SKDSELSEDDVKQFVSKQVVFY 551

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 19/79 (24%), Positives = 41/79 (51%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           +D    +V R+K++I   G  + P E+E  +  HP++ +     + +E  GE     +  
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529

Query: 112 KENAKLNADDIRTFCKGKV 130
            ++++L+ DD++ F   +V
Sbjct: 530 SKDSELSEDDVKQFVSKQV 548

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 86.4 bits (215), Expect = 8e-19
 Identities = 22/85 (25%), Positives = 37/85 (43%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E     
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           +  +       +      K   +K+
Sbjct: 481 VVPRGEKPTPEELNEHLLKAGFAKW 505

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 82.2 bits (204), Expect = 2e-17
 Identities = 21/82 (25%), Positives = 34/82 (41%)

Query: 49  VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 108
           V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E     
Sbjct: 421 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 480

Query: 109 IKLKENAKLNADDIRTFCKGKV 130
           +  +       +      K   
Sbjct: 481 VVPRGEKPTPEELNEHLLKAGF 502

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           +L  D+ +  EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   
Sbjct: 435 WLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVR 494

Query: 102 GEEVGISIKLKENAKLN-----ADDIRTFCK 127
           GE V   + L      +       +++   K
Sbjct: 495 GEVVKAFVVLASQFLSHDPEQLTKELQQHVK 525

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY Q +GR  D+I   G  I P E+E  +  HP V+E      PD   GE V   + L
Sbjct: 445 EDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVL 504

Query: 344 KENAKLN-----ADDIRTFCKGKVS 363
                 +       +++   K   +
Sbjct: 505 ASQFLSHDPEQLTKELQQHVKSVTA 529

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 58  VVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 105
           V GRIKD+II  G+N YP++IE  +  +  + +     A+ + +E   +  
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQ-THPNVLEAY--AYGVPDERMGEEV 337
           V GRIKD+II  G+N YP++IE  +  +  + +     A+ + +E   +  
Sbjct: 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHEYKLT 503

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+ +  +I L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523

Query: 112 KENAKLN---ADDIRTFCK 127
            ++   +    ++++   K
Sbjct: 524 TKDYTPSDSLKNELQDHVK 542

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY   VGR  D+I   G  + P E+E  +  HP VLE    GVPD   G+ +  +I L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523

Query: 344 KENAKLN---ADDIRTFCK 359
            ++   +    ++++   K
Sbjct: 524 TKDYTPSDSLKNELQDHVK 542

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 43/286 (15%), Positives = 92/286 (32%), Gaps = 73/286 (25%)

Query: 78  IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCI 137
           I E I+      + + + V  +++   +  S+       L   + R     K+  ++S +
Sbjct: 333 IAESIRDGLATWDNWKH-VNCDKLTTIIESSLN-----VLEPAEYR-----KMFDRLS-V 380

Query: 138 FIIIVRISCECILLKYRSASTVW----YSNVLLFSQVF----LVVIDP---SLTIHTVWP 186
           F     I     LL     S +W     S+V++         LV   P   +++I +++ 
Sbjct: 381 FPPSAHIPTI--LL-----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY- 432

Query: 187 GQSYFPCCCGKLRIHPFLEVVQSFECRR----------------YQVVLHIFEHLF---L 227
                     +  +H    +V  +   +                Y    HI  HL     
Sbjct: 433 -LELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLKNIEH 486

Query: 228 ELVLYIVNSVLYNFKWINQVSSQTMAMKSKR-GLPARVKAPDRKKCSQRPRY-QFVLRED 285
              + +   V  +F+++ Q        K +                 Q   Y  ++   D
Sbjct: 487 PERMTLFRMVFLDFRFLEQ--------KIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 286 G-YGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPN---VLEAY 324
             Y ++V  I D + +  EN+   +  + ++      +     EA+
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 38/259 (14%), Positives = 69/259 (26%), Gaps = 91/259 (35%)

Query: 113 ENAKLNADDIRTFCKGKVKRKISCIFIIIVR------------ISCECILLKYRSASTVW 160
            N KL    I+   +  +K K     ++++             +SC+ ILL  R      
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILLTTRFKQVTD 279

Query: 161 YSNVLLFSQVFLVVIDPSLTIHTVWPGQS------YFPCCCGKLR-----IHPFL----- 204
           + +    + + L     +LT     P +       Y  C    L       +P       
Sbjct: 280 FLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 205 EVVQSFECR--RYQVVL-----HIFE------------HLFLELVLY-----IVNSVLYN 240
           E ++        ++ V       I E             +F  L ++     I   +L  
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 241 FKWINQVSSQTMAM------KS---KRGLPARVKAPD-----RKKCSQRP--------RY 278
             W + + S  M +       S   K+   + +  P      + K              Y
Sbjct: 395 I-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 279 QF----------VLREDGY 287
                           D Y
Sbjct: 454 NIPKTFDSDDLIPPYLDQY 472

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 52  EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 111
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +   + L
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 565

Query: 112 KENAKLNADDIRTFCKGKVKRKISCI 137
               +  + ++    +  V+++I  +
Sbjct: 566 NHGEE-PSPELYAEVRNWVRKEIGPL 590

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
           EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +   + L
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTL 565

Query: 344 KENAKLNADDIRTFCKGKVSK 364
               +  + ++    +  V K
Sbjct: 566 NHGEE-PSPELYAEVRNWVRK 585

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 56  GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 115
            ++ GR  DM+I  G N++P +IEE +     +   Y   +  E   + + ++++     
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385

Query: 116 KLNADDIRTFCKGKVKRKI 134
             +   I+   +  +   I
Sbjct: 386 APDTAAIQVAKQ-ALAYDI 403

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 288 GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENA 347
            ++ GR  DM+I  G N++P +IEE +     +   Y   +  E   + + ++++     
Sbjct: 326 EKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPET 385

Query: 348 KLNADDIRTFCK 359
             +   I+   +
Sbjct: 386 APDTAAIQVAKQ 397

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 11/99 (11%)

Query: 45  RDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE 104
           +D     +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  G+ 
Sbjct: 513 KD-----KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQA 567

Query: 105 VGISIKLKENAKLN------ADDIRTFCKGKVKRKISCI 137
           V   + LK  +  +        DI+      V++ I   
Sbjct: 568 VAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF 606

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 337
           +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  G+ V
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAV 568

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 58  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 117
           + GR  DM I  G NI+P ++E+ +   P +   Y   +      +E+ + ++L + +  
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTD 385

Query: 118 NADDIRTFCKGKVKRKI 134
           N  ++    +  + R++
Sbjct: 386 NYIELEKIRR-DIIRQL 401

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 324
           + GR  DM I  G NI+P ++E+ +   P +   Y
Sbjct: 326 IKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNY 360

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 58  VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKL 117
           + GR  DM+I  G N++P +IEE +   P +   +   +  +   + + ++++L+  A  
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEA-- 387

Query: 118 NADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRS 155
            A  +    +  + R++      +V +S    +L    
Sbjct: 388 -AASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGG 424

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 290 VVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAY 324
           + GR  DM+I  G N++P +IEE +   P +   +
Sbjct: 330 ITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQF 364

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.98
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.98
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.98
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.98
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.98
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.98
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.97
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.97
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.97
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.97
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.97
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.97
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.97
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.97
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.97
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.95
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.95
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.91
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.9
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.9
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.9
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.87
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.86
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.86
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.85
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.84
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.84
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.84
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.84
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.83
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.83
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.83
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.82
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.81
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.81
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.81
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.81
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.81
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.81
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.8
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.8
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.79
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.79
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.79
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.78
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.77
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.75
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.74
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.74
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.73
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.72
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.71
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.7
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.67
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.65
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.63
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.31
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.3
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.29
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.26
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	98.45
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	98.32
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	97.84
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	97.57
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	97.41
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.89
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	96.78
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	96.41

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2e-35  Score=290.02  Aligned_cols=183  Identities=17%  Similarity=0.164  Sum_probs=160.9

Q ss_pred             hhccCCCCccccccCCcccccccccccc----cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQ----SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK  255 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~  255 (365)
                      +...+++..+.+. ||+||++++++...    .......+++|+|+|+++++|+|++.+...+ .+..||+ ++||+++.
T Consensus       317 ~~~~~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~g~~GEl~v~g~~v~~  394 (536)
T 3ni2_A          317 VRAKFPQARLGQG-YGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLP-RNQPGEICIRGDQIMK  394 (536)
T ss_dssp             HHHHCTTSEEEEE-EECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCC-TTCCEEEEEESTTSCS
T ss_pred             HHHHCCCCCcccc-ccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCC-CCCccEEEEeCcccch
Confidence            4456778999999 99999987654321    1122456789999999999999966444333 3578998 99999999


Q ss_pred             cccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCc
Q psy13046        256 SKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGE  335 (365)
Q Consensus       256 gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~  335 (365)
                      |||++|+.|++.|+.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+
T Consensus       395 GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~  474 (536)
T 3ni2_A          395 GYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE  474 (536)
T ss_dssp             EETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEE
T ss_pred             hhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCc
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        336 EVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       336 ~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      .++|+|+.+++...+.++|+++|+++|+.|
T Consensus       475 ~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~  504 (536)
T 3ni2_A          475 VPVAFVVKSEKSQATEDEIKQYISKQVIFY  504 (536)
T ss_dssp             EEEEEEEECTTCCCCHHHHHHHHHTTSCGG
T ss_pred             eeEEEEEecCCCCCCHHHHHHHHHHhccCC
Confidence            999999998887888999999999999876

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=5.5e-35  Score=284.73  Aligned_cols=181  Identities=23%  Similarity=0.244  Sum_probs=159.0

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      +....+..+.+. ||+||++..+..... .....+++|+|+|+++++|+|++.+...+ .+..||+ ++||++++|||++
T Consensus       288 ~~~~~~~~~~~~-YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~g~~~~-~g~~GEl~v~g~~v~~GY~~~  364 (503)
T 4fuq_A          288 WSAKTGHAVLER-YGMTETNMNTSNPYD-GDRVPGAVGPALPGVSARVTDPETGKELP-RGDIGMIEVKGPNVFKGYWRM  364 (503)
T ss_dssp             HHHHHSCCEEEC-CEETTTEECBCCCSS-SCCCTTEEEEBCTTCEEEEECTTTCCBCC-TTCCEEEEEESTTSCCCBTTC
T ss_pred             HHHHhCCCccce-EcccccCcccccCCC-CCCcCCccccCCCCeEEEEEECCCCCCCc-CCCceEEEEECCchhhhhcCC
Confidence            334446778888 999999876543322 23556789999999999999955443333 3578998 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      |+.|+++|..+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++|+
T Consensus       365 ~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~  444 (503)
T 4fuq_A          365 PEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAV  444 (503)
T ss_dssp             HHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEE
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |+++++...+.++++++|+++|++|
T Consensus       445 v~~~~~~~~~~~~l~~~l~~~L~~~  469 (503)
T 4fuq_A          445 VVRDKGATIDEAQVLHGLDGQLAKF  469 (503)
T ss_dssp             EEECTTCCCCHHHHHHHHBTTBCGG
T ss_pred             EEeCCCCCCCHHHHHHHHHhhcccC
Confidence            9999888889999999999999976

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.1e-34  Score=285.53  Aligned_cols=181  Identities=17%  Similarity=0.151  Sum_probs=159.2

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecCccccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQTMAMKSKR  258 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~~~~~gY~  258 (365)
                      +...+++..+.+. ||+||++..++..... ....+++|+|+|+++++|+|+ ++++++.  +..||+ ++||++++|||
T Consensus       329 ~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~GEl~v~g~~v~~GY~  404 (548)
T 2d1s_A          329 VARRFNLPGVRQG-YGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLGP--NRRGEVCVKGPMLMKGYV  404 (548)
T ss_dssp             HHHHTTCSCCEEE-EECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBCCT--TCCEEEEEESTTSCSEET
T ss_pred             HHHHcCCCceeec-cccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccCCC--CCCeEEEECCHHHhhhhc
Confidence            4445677888888 9999998766543222 245678999999999999995 4444433  578998 99999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++|+.|++.|+.+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..|+.++
T Consensus       405 ~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~  484 (548)
T 2d1s_A          405 NNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPG  484 (548)
T ss_dssp             TCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEE
T ss_pred             CChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeE
Confidence            99999999997799999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |+|+++++...+.++|+++|+++|++|
T Consensus       485 a~vv~~~~~~~~~~~l~~~~~~~l~~~  511 (548)
T 2d1s_A          485 AVVVLESGKNMTEKEVMDYVASQVSNA  511 (548)
T ss_dssp             EEEEECTTCCCCHHHHHHHHHTTSCGG
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHhcccc
Confidence            999998877788899999999999875

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=2.1e-34  Score=280.69  Aligned_cols=181  Identities=21%  Similarity=0.163  Sum_probs=155.1

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceecc-CCceeeEE-eecCcccccccCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLY-NFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~-~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      ....+..+.+. ||+||++..++..... .....++|+|+|+++++|+|+++.+++. +.+..||+ ++|++++.|||++
T Consensus       293 ~~~~~~~~~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~  370 (505)
T 3nyq_A          293 AAATGRRVIER-YGMTETLMNTSVRADG-EPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNR  370 (505)
T ss_dssp             HHHHSCCCEEE-EEETTTEEEEECCTTS-CCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTC
T ss_pred             HHhcCCeeecc-cchhhcccccccCCCC-CCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCC
Confidence            34457788888 9999998765543332 2456789999999999999988877764 44578998 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeec-CceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~-~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      |+.|+++|..+|||+|||+|++|+||+++|+||+ ||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++|
T Consensus       371 ~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a  450 (505)
T 3nyq_A          371 PDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA  450 (505)
T ss_dssp             HHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred             hhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEE
Confidence            9999999988999999999999999999999998 599999999999999999999999999999999999999999999


Q ss_pred             EEEEcC-CCCCCHHHHHHHHHcccCCC
Q psy13046        340 SIKLKE-NAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~-~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +|++.+ +...+.++|+++|+++|++|
T Consensus       451 ~vv~~~~~~~~~~~~l~~~l~~~L~~~  477 (505)
T 3nyq_A          451 WIVPADPAAPPALGTLADHVAARLAPH  477 (505)
T ss_dssp             EEEESSTTSCCCHHHHHHHHHHHTCGG
T ss_pred             EEEECCCCCCCCHHHHHHHHHhhCCCC
Confidence            999876 44567899999999999976

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=9.1e-35  Score=285.66  Aligned_cols=178  Identities=17%  Similarity=0.121  Sum_probs=131.6

Q ss_pred             CCCccccccCCcccccccccccccc----------cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSF----------ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM  254 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~----------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~  254 (365)
                      .+..+.+. ||+||++++++.....          ......++|+|+|+++++|+|+++++++.+.+..||+ ++||+++
T Consensus       316 ~g~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~  394 (541)
T 1v25_A          316 MGVEVRQG-YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWIT  394 (541)
T ss_dssp             TTCEEEEE-EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSB
T ss_pred             hCCceeec-ccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchh
Confidence            47788888 9999998766533211          0023578999999999999998887776554568998 9999999


Q ss_pred             ccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046        255 KSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       255 ~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      .|||++|+.|+++|..+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..+
T Consensus       395 ~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~  474 (541)
T 1v25_A          395 GGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQ  474 (541)
T ss_dssp             SSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSS
T ss_pred             ccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcC
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             cEEEEEEEEcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046        335 EEVGISIKLKENAKLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       335 ~~~~a~v~~~~~~~~~~~~l~~~~~~-~l~~y  365 (365)
                      +.++|+|+++ +...+.++++++|++ +|++|
T Consensus       475 ~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~  505 (541)
T 1v25_A          475 ERPLAVVVPR-GEKPTPEELNEHLLKAGFAKW  505 (541)
T ss_dssp             EEEEECC--------------------CCCTT
T ss_pred             ceEEEEEEEC-CCCCCHHHHHHHHHhccCccc
Confidence            9999999976 445567899999999 89876

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=6.6e-34  Score=280.06  Aligned_cols=176  Identities=18%  Similarity=0.179  Sum_probs=136.2

Q ss_pred             CCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      ...+.+. ||+||++.+++...........++|+|+|+++++|+|+ ++.+++.  +..||+ ++||++++|||++|+.|
T Consensus       328 ~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t  404 (549)
T 3g7s_A          328 RLRHNQI-WGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGV--GESGEIVIRGPNIFKGYWKREKEN  404 (549)
T ss_dssp             TCEEEEE-EECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECT--TCCEEEEEESTTSCSEETTCTTGG
T ss_pred             cccccce-EeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCC--CCceEEEEECcchhhhhCCChhhh
Confidence            3777888 99999988776544333356778999999999999994 4444433  578998 99999999999999999


Q ss_pred             ccccC--CCC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        265 KAPDR--KKC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       265 ~~~~~--~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      +++|.  .+|  ||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+
T Consensus       405 ~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~  484 (549)
T 3g7s_A          405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAF  484 (549)
T ss_dssp             GTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEE
T ss_pred             hhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEE
Confidence            99983  477  99999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             EEEcCC--CCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKEN--AKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~--~~~~~~~l~~~~~~~l~~y  365 (365)
                      |+++++  ...+.++|+++|+++|++|
T Consensus       485 vv~~~~~~~~~~~~~l~~~l~~~L~~~  511 (549)
T 3g7s_A          485 IVLKPEYRGKVDEEDIIEWVRERISGY  511 (549)
T ss_dssp             EEECSTTTTSCCHHHHHHHHHTTCC--
T ss_pred             EEECCCccCcCCHHHHHHHHHHhccCc
Confidence            999876  5678899999999999986

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=5.7e-34  Score=279.85  Aligned_cols=177  Identities=19%  Similarity=0.158  Sum_probs=152.2

Q ss_pred             CCCCccccccCCcccccccccccccccccccceeeEeecC-eeEEEEEcccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEH-LFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPA  262 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~  262 (365)
                      ..+..+.+. ||+||++..+............++|+|+++ .+++|+|+++.+++.  +..||+ ++||++++|||++|+
T Consensus       321 ~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~  397 (539)
T 1mdb_A          321 VFGCTLQQV-FGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKP--GETGHLLTRGPYTIRGYYKAEE  397 (539)
T ss_dssp             HTCSEEEEE-EECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCT--TCCEEEEEECTTSCSSCTTCHH
T ss_pred             HhCCcEEEE-EcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcC--CCcceEEeeCcccchhhcCChh
Confidence            346788888 999997543332222112345789999975 589999987766554  578998 999999999999999


Q ss_pred             ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046        263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  342 (365)
Q Consensus       263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~  342 (365)
                      .|+++|..+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+|+
T Consensus       398 ~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv  477 (539)
T 1mdb_A          398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII  477 (539)
T ss_dssp             HHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEE
Confidence            99999988999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             EcCCCCCCHHHHHHHHHcc-cCCC
Q psy13046        343 LKENAKLNADDIRTFCKGK-VSKF  365 (365)
Q Consensus       343 ~~~~~~~~~~~l~~~~~~~-l~~y  365 (365)
                      +++ ...+.++|+++|+++ |++|
T Consensus       478 ~~~-~~~~~~~l~~~l~~~~L~~~  500 (539)
T 1mdb_A          478 PRD-EAPKAAELKAFLRERGLAAY  500 (539)
T ss_dssp             ESS-SCCCHHHHHHHHHHTTCCGG
T ss_pred             ECC-CCCCHHHHHHHHHhCCCCcc
Confidence            874 456789999999997 9876

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.3e-33  Score=279.46  Aligned_cols=178  Identities=18%  Similarity=0.160  Sum_probs=155.8

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec-----Cccccc
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ-----TMAMKS  256 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g-----~~~~~g  256 (365)
                      ....+..+.+. ||+||++..++.... .....+++|+|+|+++++|+|+++.+++.  +..||+ ++|     +++++|
T Consensus       362 ~~~~g~~i~~~-YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~v~ivd~~g~~~~~--g~~GEl~v~~~~g~~~~~~~g  437 (580)
T 3etc_A          362 LEFTGIKLMEG-FGQTETVVTIATFPW-MEPKPGSIGKPTPGYKIELMDRDGRLCEV--GEEGEIVINTMEGKPVGLFVH  437 (580)
T ss_dssp             HHHHSCCCEEE-ECCTTSSCCEECCTT-SCCCTTCCBEECTTCEEEEECTTSCBCCT--TCCEEEEEECTTCCCTTCCCE
T ss_pred             HHHhCCeEecc-cccccccceeecCCC-CCCCCCccccCCCCCEEEEECCCCCCCCC--CCceEEEEecCCCCCCeeecc
Confidence            34457788888 999999766554332 23566889999999999999988776654  478998 876     889999


Q ss_pred             ccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcE
Q psy13046        257 KRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEE  336 (365)
Q Consensus       257 Y~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~  336 (365)
                      ||++|+.|++.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.
T Consensus       438 Y~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~  516 (580)
T 3etc_A          438 YGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQV  516 (580)
T ss_dssp             ETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred             ccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcE
Confidence            9999999999997 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEcCCCCCC---HHHHHHHHHcccCCC
Q psy13046        337 VGISIKLKENAKLN---ADDIRTFCKGKVSKF  365 (365)
Q Consensus       337 ~~a~v~~~~~~~~~---~~~l~~~~~~~l~~y  365 (365)
                      +.|+|+++++...+   .++|+++|+++|++|
T Consensus       517 ~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~  548 (580)
T 3etc_A          517 IKATIVLTKDYTPSDSLKNELQDHVKNVTAPY  548 (580)
T ss_dssp             EEEEEEECTTCCCCHHHHHHHHHHHHHHSCGG
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHhhCCCc
Confidence            99999998875544   368999999999876

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=9.1e-35  Score=286.25  Aligned_cols=180  Identities=17%  Similarity=0.165  Sum_probs=87.7

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ..++...+.+. ||+||++..++..... ....+++|+|+|+++++|+|++++...+ .+..||+ ++||+++.|||++|
T Consensus       329 ~~~~~~~v~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~~~~~~~~~i~d~~~~~~~~-~g~~GEl~v~g~~v~~GY~~~~  405 (550)
T 3rix_A          329 KRFHLPGIRQG-YGLTETTSAILITPEG-DDKPGAVGKVVPFFEAKVVDLDTGKTLG-VNQRGELCVRGPMIMSGYVNNP  405 (550)
T ss_dssp             HHTTCSCCEEE-EECGGGSSEEEECCTT-CCCTTEEEEECTTCEEEEECTTTCCBCC-TTCCEEEEEESTTSCSEETTCH
T ss_pred             HHcCCCccccc-cCcCccccceecCCCC-CCCCCCcccccCCcEEEEEeCCCCcCCC-CCCCeEEEEeCCCcchhhcCCh
Confidence            34554457788 9999998766644332 2566899999999999999965544433 3678998 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.|++.|+.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++|+|
T Consensus       406 ~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~v  485 (550)
T 3rix_A          406 EATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVV  485 (550)
T ss_dssp             HHHHHHBCTTSCEEEEEEEEECTTCCEEEC--------------------------------------------------
T ss_pred             hhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEE
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +++++...+.++++++++++|++|
T Consensus       486 v~~~~~~~~~~~l~~~~~~~l~~~  509 (550)
T 3rix_A          486 VLEHGKTMTEKEIVDYVASQVTTA  509 (550)
T ss_dssp             ------------------------
T ss_pred             EecCCCCCCHHHHHHHHHHhcccc
Confidence            998877778889999999998764

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.4e-33  Score=274.06  Aligned_cols=173  Identities=20%  Similarity=0.227  Sum_probs=152.8

Q ss_pred             CCccccccCCccccccccccccccc-ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQSFE-CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      +..+.+. ||+||++..++...... ....+++|+|+++++++|+|+++..++.+   .||+ ++||+++.|||++|+.|
T Consensus       308 ~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t  383 (517)
T 3r44_A          308 NIEVVQG-YALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPEAT  383 (517)
T ss_dssp             TCEEEEE-EECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE---EEEEEEEETTSCSEETTCHHHH
T ss_pred             CCcEEEe-ecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC---CeEEEEeCcchhhhhCCChhhh
Confidence            7788888 99999987665332222 35668899999999999999776655433   6898 99999999999999999


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      ++.|. +|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++++| +.
T Consensus       384 ~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~  461 (517)
T 3r44_A          384 RDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VA  461 (517)
T ss_dssp             HHTEE-TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EE
T ss_pred             Hhhhc-CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-EC
Confidence            99996 89999999999999999999999999999999999999999999999999999999999998899888888 55


Q ss_pred             CCCCCCHHHHHHHHHcccCCC
Q psy13046        345 ENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       345 ~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++...+.++|+++|+++|++|
T Consensus       462 ~~~~~~~~~l~~~l~~~L~~~  482 (517)
T 3r44_A          462 DQNEVSEQQIVEYCGTRLARY  482 (517)
T ss_dssp             CTTTCCHHHHHHHHHHHSCGG
T ss_pred             CCCCCCHHHHHHHHHHhCCCC
Confidence            666788899999999999976

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.8e-34  Score=283.91  Aligned_cols=183  Identities=13%  Similarity=0.034  Sum_probs=90.8

Q ss_pred             chhccCCCCccccccCCcccccccccccccc---cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccc
Q psy13046        180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF---ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMK  255 (365)
Q Consensus       180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~  255 (365)
                      ++...+++..+.+. ||+||++.+++.....   ......++|+|+|+++++|+|+++.+++.  +..||+ ++||++|+
T Consensus       345 ~~~~~~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~--G~~GEl~v~g~~v~~  421 (570)
T 4gr5_A          345 KARRDHPALRLGNG-YGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAAN--GALGELYVAGAGLAH  421 (570)
T ss_dssp             HHHHHCTTCEEEEE-ECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCT--TCEEEEEEEETTCCC
T ss_pred             HHHHhCCCcEEEEe-echhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCC--CCcEEEEEeecccch
Confidence            34456788889999 9999998766532211   11344579999999999999987766554  588998 99999999


Q ss_pred             cccCCCcccccccCC--------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEe
Q psy13046        256 SKRGLPARVKAPDRK--------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYG  327 (365)
Q Consensus       256 gY~~~~~~~~~~~~~--------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~  327 (365)
                      |||++|+.|+++|..        +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++
T Consensus       422 GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~  501 (570)
T 4gr5_A          422 GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA  501 (570)
T ss_dssp             EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------
T ss_pred             hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEE
Confidence            999999999988843        379999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCcEEEEEEEEcCC-CCCCHHHHHHHHHcccCCC
Q psy13046        328 VPDERMGEEVGISIKLKEN-AKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       328 ~~~~~~g~~~~a~v~~~~~-~~~~~~~l~~~~~~~l~~y  365 (365)
                      .+++..++.++|+|+++++ ...+.++|+++|+++|+.|
T Consensus       502 ~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~  540 (570)
T 4gr5_A          502 QDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAY  540 (570)
T ss_dssp             ---------------------------------------
T ss_pred             eeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccc
Confidence            9998888999999987653 3456789999999999876

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.2e-32  Score=271.76  Aligned_cols=173  Identities=10%  Similarity=0.045  Sum_probs=149.7

Q ss_pred             CccccccCCccccccccccccccc--ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQSFE--CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      ..+.+. ||+||++..++......  .....++|+|+|+++++|+|++++.++.  +..||+ ++||++|+|||++|+.|
T Consensus       317 ~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~--g~~GEl~v~g~~v~~GY~~~pe~t  393 (563)
T 1amu_A          317 VTYINA-YGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSV--GEAGELCIGGEGLARGYWKRPELT  393 (563)
T ss_dssp             SEEEEE-ECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCT--TCEEEEEEEETTCCCEETTCHHHH
T ss_pred             CeEEEE-ECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCC--CCcEEEEEechhhChhhCCCchhh
Confidence            567777 99999987655322111  1245689999999999999987766543  578998 99999999999999999


Q ss_pred             ccccCC------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        265 KAPDRK------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       265 ~~~~~~------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      +++|..      ++||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++
T Consensus       394 ~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~  473 (563)
T 1amu_A          394 SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLC  473 (563)
T ss_dssp             HHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEE
T ss_pred             hhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEE
Confidence            988842      45999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |+|++..  ..+.++|+++|+++|++|
T Consensus       474 a~vv~~~--~~~~~~l~~~l~~~L~~y  498 (563)
T 1amu_A          474 AYFVSEK--HIPLEQLRQFSSEELPTY  498 (563)
T ss_dssp             EEEEESS--CCCHHHHHHHHHHHSCGG
T ss_pred             EEEEeCC--CCCHHHHHHHHHhhCchh
Confidence            9999764  467899999999999876

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.98  E-value=1.2e-32  Score=276.06  Aligned_cols=175  Identities=15%  Similarity=0.116  Sum_probs=151.8

Q ss_pred             CccccccCCccccccccccccc-ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--CcccccccCCCcc
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQS-FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKRGLPAR  263 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~~~  263 (365)
                      ..+.+. ||+||++..++.... ......+++|+|+||++++|+|+++++++.  +..||+ ++|  |++++|||++|+.
T Consensus       407 ~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~  483 (652)
T 1pg4_A          407 CPVVDT-WWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEG--ATEGNLVITDSWPGQARTLFGDHER  483 (652)
T ss_dssp             SCEEEE-BCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHH
T ss_pred             CcEEcc-ccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCC--CceEEEEEccCCCchhhhhcCCHHH
Confidence            678888 999999876553322 222456799999999999999988776644  578998 999  7999999999998


Q ss_pred             cccccC--CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        264 VKAPDR--KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       264 ~~~~~~--~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.+.|.  .+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++|+|
T Consensus       484 ~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~V  563 (652)
T 1pg4_A          484 FEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYV  563 (652)
T ss_dssp             HHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             HHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEE
Confidence            877652  378999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             EEcCCCCCC---HHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLN---ADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~---~~~l~~~~~~~l~~y  365 (365)
                      +++++...+   .++|+++|+++|++|
T Consensus       564 v~~~~~~~~~~~~~~l~~~l~~~l~~~  590 (652)
T 1pg4_A          564 TLNHGEEPSPELYAEVRNWVRKEIGPL  590 (652)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             EECCCCCCCHHHHHHHHHHHHHhCCCC
Confidence            998765554   478999999999875

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.98  E-value=1.5e-32  Score=267.66  Aligned_cols=174  Identities=22%  Similarity=0.246  Sum_probs=151.6

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEccc---ceeccCCceeeEE-ee-cCccccccc
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIV---NSVLYNFKWINQV-SS-QTMAMKSKR  258 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~---~~~~~~~~~~gei-~~-g~~~~~gY~  258 (365)
                      ...+..+.+. ||+||++ .+....   ....+++|+|+++++++|+|.++   ..++  .+..||+ ++ |+++|.|||
T Consensus       294 ~~~~~~~~~~-YG~TE~~-~~~~~~---~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~--~g~~GEl~v~gg~~~~~GY~  366 (504)
T 1t5h_X          294 QHLPGEKVNI-YGTTEAM-NSLYMR---QPKTGTEMAPGFFSEVRIVRIGGGVDEIVA--NGEEGELIVAASDSAFVGYL  366 (504)
T ss_dssp             HHCCSEEEEE-EEETTTE-EEEEEE---SCSSSSEEBCCTTCCEEEECTTSCTTCBCC--TTCCEEEEEECCTTSCCCBT
T ss_pred             HhcCcceeee-ecccccc-cccccc---CCCCCccccCCCCCceeEEeccCCCCCcCC--CCCcceEEEeCCceeeceec
Confidence            3345677888 9999993 222211   24557889999999999999766   3333  3578998 88 999999999


Q ss_pred             CCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        259 GLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       259 ~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      ++|+.|++.|. +|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++
T Consensus       367 ~~~~~t~~~f~-~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~  445 (504)
T 1t5h_X          367 NQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVT  445 (504)
T ss_dssp             TCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEE
T ss_pred             CCchhhhhhhc-CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEE
Confidence            99999999995 89999999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             EEEEEcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046        339 ISIKLKENAKLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       339 a~v~~~~~~~~~~~~l~~~~~~-~l~~y  365 (365)
                      |+|+++++...+.++++++|++ +|++|
T Consensus       446 a~vv~~~~~~~~~~~l~~~~~~~~L~~~  473 (504)
T 1t5h_X          446 ACVVPRLGETLSADALDTFCRSSELADF  473 (504)
T ss_dssp             EEEEECTTCCCCHHHHHHHHHTSSCCGG
T ss_pred             EEEEecCCcCcCHHHHHHHHhhccCccc
Confidence            9999988777888999999998 89876

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.98  E-value=5.1e-33  Score=274.70  Aligned_cols=175  Identities=18%  Similarity=0.128  Sum_probs=151.9

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-ee-----cCcccccccC
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SS-----QTMAMKSKRG  259 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~-----g~~~~~gY~~  259 (365)
                      .+..+.+. ||+||++..++..... ....+++|+|+|+++++|+|+++++++.  +..||+ ++     |+++|+|||+
T Consensus       346 ~g~~i~~~-YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~~v~i~d~~g~~~~~--G~~GEl~v~~~~~~g~~v~~GY~~  421 (570)
T 3c5e_A          346 TGLDIRES-YGQTETGLTCMVSKTM-KIKPGYMGTAASCYDVQIIDDKGNVLPP--GTEGDIGIRVKPIRPIGIFSGYVD  421 (570)
T ss_dssp             HSCCCEEE-EEETTTEEEEECCTTS-CCCTTCCCEECTTCCEEEECTTSCBCCT--TCCEEEEEECSSBCCTTCCCEETT
T ss_pred             hCCchhhc-cchhhcccceecCccc-ccCCCcccccCCCceEEEECCCCCCCCC--CCCCeeEEeccCCCCchhhccccC
Confidence            36778888 9999998765543322 2456789999999999999988766544  578998 88     9999999999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +|+.|++.|. ++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++|
T Consensus       422 ~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a  500 (570)
T 3c5e_A          422 NPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKA  500 (570)
T ss_dssp             CHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred             ChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEE
Confidence            9999999997 899999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEEcCCCC--C---CHHHHHHHHHcccCCC
Q psy13046        340 SIKLKENAK--L---NADDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~--~---~~~~l~~~~~~~l~~y  365 (365)
                      +|+++++..  .   ..++|+++|+++|++|
T Consensus       501 ~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~  531 (570)
T 3c5e_A          501 FVVLASQFLSHDPEQLTKELQQHVKSVTAPY  531 (570)
T ss_dssp             EEEECGGGTTSCHHHHHHHHHHHHHHHSCGG
T ss_pred             EEEECCcccCcchHHHHHHHHHHHHhhCccc
Confidence            999876431  1   2468999999999875

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.98  E-value=8.2e-34  Score=279.04  Aligned_cols=177  Identities=20%  Similarity=0.158  Sum_probs=90.6

Q ss_pred             CCCCccccccCCcccccccccccccccccccceeeEee-cCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCc
Q psy13046        185 WPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIF-EHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPA  262 (365)
Q Consensus       185 ~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~  262 (365)
                      ..+..+.+. ||+||++..++...........++|+|+ ++++++|+|+++.+++.  +..||+ ++||+++.|||++|+
T Consensus       330 ~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~  406 (544)
T 3o83_A          330 VLNCKLQQV-FGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPE--GEIGMLATRGPYTFCGYYQSPE  406 (544)
T ss_dssp             HHCSEEEEE-EECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCT--TCCEEEEEECTTSCSCCTTCHH
T ss_pred             HhCCcEEee-eccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCC--CCeeEEEEecCCcchhhcCChh
Confidence            347788888 9999997554433222224557899997 79999999977776544  578998 999999999999999


Q ss_pred             ccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEE
Q psy13046        263 RVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIK  342 (365)
Q Consensus       263 ~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~  342 (365)
                      .|+++|..+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..|+.++|+|+
T Consensus       407 ~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv  486 (544)
T 3o83_A          407 HNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIV  486 (544)
T ss_dssp             HHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------------
T ss_pred             hhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEE
Confidence            99999988999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             EcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046        343 LKENAKLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       343 ~~~~~~~~~~~l~~~~~~-~l~~y  365 (365)
                      .++ ...+.+++++++++ +|++|
T Consensus       487 ~~~-~~~~~~~l~~~~~~~~l~~~  509 (544)
T 3o83_A          487 SRN-PELKAVVLRRHLMELGIAQY  509 (544)
T ss_dssp             ------------------------
T ss_pred             eCC-CCCCHHHHHHHHHhCCCCcc
Confidence            876 34566789999988 68876

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.98  E-value=4.9e-33  Score=272.18  Aligned_cols=184  Identities=12%  Similarity=0.031  Sum_probs=147.3

Q ss_pred             cchhccCCCCccccccCCcccccccccccccc----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~  253 (365)
                      ..+...+++..+.+. ||+||++..++.....    ......++|+|+|+++++|+|+++.+++.  +..||+ ++||++
T Consensus       282 ~~~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~v  358 (521)
T 3l8c_A          282 RKLFERFPSAKIINA-YGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSS--GEQGEIIVTGPAV  358 (521)
T ss_dssp             HHHHHHCTTCEEEEE-ECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCT--TCCEEEEEESTTS
T ss_pred             HHHHHHCCCceEEeC-cCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCC--CCceEEEeccccc
Confidence            344566789999999 9999998765532211    11345689999999999999987776654  478998 999999


Q ss_pred             cccccCCCccccccc---CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecC
Q psy13046        254 MKSKRGLPARVKAPD---RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD  330 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  330 (365)
                      |.|||++|+.|+++|   +.+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.++
T Consensus       359 ~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  438 (521)
T 3l8c_A          359 SKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYN  438 (521)
T ss_dssp             CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred             ChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence            999999999999888   45789999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC-CCcEEEEEEEEcCCCCCC-------HHHHHHHHHcccCCC
Q psy13046        331 ER-MGEEVGISIKLKENAKLN-------ADDIRTFCKGKVSKF  365 (365)
Q Consensus       331 ~~-~g~~~~a~v~~~~~~~~~-------~~~l~~~~~~~l~~y  365 (365)
                      +. .++.++|+|+++++....       .++|+++|+++|++|
T Consensus       439 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~  481 (521)
T 3l8c_A          439 KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSY  481 (521)
T ss_dssp             SSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGG
T ss_pred             CCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccc
Confidence            54 468899999998764321       468999999999876

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.98  E-value=2.9e-32  Score=266.11  Aligned_cols=183  Identities=13%  Similarity=0.015  Sum_probs=154.1

Q ss_pred             cchhccCCCCccccccCCcccccccccccccc----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcc
Q psy13046        179 LTIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMA  253 (365)
Q Consensus       179 ~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~  253 (365)
                      ..+...+++..+.+. ||+||++..++.....    ......++|+|+|+++++|+|+++.+++.  +..||+ ++||++
T Consensus       278 ~~~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~v  354 (511)
T 3e7w_A          278 KALLERFPKAKIFNT-YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPE--GEKGEIVIAGPSV  354 (511)
T ss_dssp             HHHHHHCTTCEEEEC-CCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCT--TCCEEEEEESTTS
T ss_pred             HHHHHHCCCcEEEeC-cccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCC--CCceEEEEecCcc
Confidence            334456789999999 9999998766532211    11345679999999999999988766654  578998 999999


Q ss_pred             cccccCCCcccccccC-CCC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecC
Q psy13046        254 MKSKRGLPARVKAPDR-KKC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPD  330 (365)
Q Consensus       254 ~~gY~~~~~~~~~~~~-~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~  330 (365)
                      |.|||++|+.|++.|. .+|  ||+|||+|++ +||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.++
T Consensus       355 ~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~  433 (511)
T 3e7w_A          355 SRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQP  433 (511)
T ss_dssp             CCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECS
T ss_pred             ChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcC
Confidence            9999999999999883 133  7999999999 59999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEEEEcCCCCCCH----HHHHHHHHcccCCC
Q psy13046        331 ERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVSKF  365 (365)
Q Consensus       331 ~~~g~~~~a~v~~~~~~~~~~----~~l~~~~~~~l~~y  365 (365)
                      +..++.++|+|+++++...+.    ++|+++|+++||+|
T Consensus       434 ~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~  472 (511)
T 3e7w_A          434 NGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAY  472 (511)
T ss_dssp             SSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchh
Confidence            888999999999987654443    67999999999876

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.97  E-value=1.4e-33  Score=275.19  Aligned_cols=179  Identities=19%  Similarity=0.263  Sum_probs=91.9

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      +...+++..+.+. ||+||++.+++.....  ....++|+|+++++++|+|+++.+++.  +..||+ ++||+++.|||+
T Consensus       289 ~~~~~~~~~~~~~-YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~--g~~GEl~v~g~~~~~gY~~  363 (509)
T 3ivr_A          289 FEATCPNATFWAT-FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPP--GEVGEIVLRGPTVFKGYWN  363 (509)
T ss_dssp             HHHHCTTCEEEEE-EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCT--TCCEEEEEESTTSCCEETT
T ss_pred             HHHhcCCCeEEcc-cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCC--CCceEEEEecCCccccccC
Confidence            4445678999999 9999998776643322  233458999999999999988766654  478998 999999999999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeec--CceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV  337 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~--~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~  337 (365)
                      +|+.|++.|. +|||+|||+|++|+||+++|+||.  ||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.+
T Consensus       364 ~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~  442 (509)
T 3ivr_A          364 NAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAI  442 (509)
T ss_dssp             CHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC---------------------------------------------
T ss_pred             CHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEE
Confidence            9999999998 999999999999999999999999  9999999999999999999999999999999999999889999


Q ss_pred             EEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        338 GISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       338 ~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +|+|+++++...+.++|+++|+++|++|
T Consensus       443 ~a~v~~~~~~~~~~~~l~~~l~~~L~~~  470 (509)
T 3ivr_A          443 KAVCVCKPGESIAADALAEFVASLIARY  470 (509)
T ss_dssp             ----------------------------
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHhhCccc
Confidence            9999998877778889999999999876

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.97  E-value=2.3e-32  Score=266.86  Aligned_cols=182  Identities=10%  Similarity=-0.013  Sum_probs=154.6

Q ss_pred             chhccCCCCccccccCCcccccccccccccc----cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046        180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQSF----ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM  254 (365)
Q Consensus       180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~  254 (365)
                      .+...+++..+.+. ||+||++..++.....    ......++|+|+++++++|+|+++..++.  +..||+ ++||+++
T Consensus       280 ~~~~~~~~~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~v~  356 (512)
T 3fce_A          280 KLIERFPKATIMNT-YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPD--GEKGEIVIVGPSVS  356 (512)
T ss_dssp             HHHHHCTTCEEEEE-ECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCT--TSCEEEEEESTTSC
T ss_pred             HHHHHCCCCEEEeC-cccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCC--CCeEEEEEeccccC
Confidence            34456789999999 9999998766532211    11345689999999999999987766554  477998 9999999


Q ss_pred             ccccCCCccccccc---CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046        255 KSKRGLPARVKAPD---RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  331 (365)
Q Consensus       255 ~gY~~~~~~~~~~~---~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  331 (365)
                      .|||++|+.|++.|   +.++||+|||+|++ +||+++|+||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++
T Consensus       357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~  435 (512)
T 3fce_A          357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG  435 (512)
T ss_dssp             SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred             hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence            99999999999888   34679999999999 799999999999999999999999999999999999999999999998


Q ss_pred             CCCcEEEEEEEEcCCCCCCH----HHHHHHHHcccCCC
Q psy13046        332 RMGEEVGISIKLKENAKLNA----DDIRTFCKGKVSKF  365 (365)
Q Consensus       332 ~~g~~~~a~v~~~~~~~~~~----~~l~~~~~~~l~~y  365 (365)
                      ..++.++|+|+++++...+.    ++++++|+++|++|
T Consensus       436 ~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~  473 (512)
T 3fce_A          436 EKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNY  473 (512)
T ss_dssp             TEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGG
T ss_pred             CCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchh
Confidence            88899999999876544332    57999999999876

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.97  E-value=2.9e-33  Score=292.76  Aligned_cols=184  Identities=16%  Similarity=0.183  Sum_probs=95.4

Q ss_pred             chhccCCCCccccccCCcccccccccccc----cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046        180 TIHTVWPGQSYFPCCCGKLRIHPFLEVVQ----SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM  254 (365)
Q Consensus       180 ~~~~~~~~~~~~~~~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~  254 (365)
                      .+...+++..+.+. ||+||++++++...    .......+++|+|+|+++++|+|++.+...+. +..||+ ++||+++
T Consensus       363 ~~~~~~~~~~l~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-g~~GEl~i~g~~v~  440 (979)
T 3tsy_A          363 AVNAKFPNAKLGQG-YGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSR-NQPGEICIRGHQIM  440 (979)
T ss_dssp             HHHHHCTTCEEEEC-EECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCT-TCCEEEEEESTTSC
T ss_pred             HHHHHCCCCeEEee-echhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCC-CCccEEEEECCCcc
Confidence            34456789999999 99999987655321    11224567899999999999999764443333 577998 9999999


Q ss_pred             ccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046        255 KSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       255 ~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      +|||++|+.|++.|..+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..+
T Consensus       441 ~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g  520 (979)
T 3tsy_A          441 KGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG  520 (979)
T ss_dssp             SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------
T ss_pred             ccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCC
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             cEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        335 EEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       335 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +.++|+|+++++...+.++|+++|+++|+.|
T Consensus       521 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~  551 (979)
T 3tsy_A          521 EVPVAFVVKSKDSELSEDDVKQFVSKQVVFY  551 (979)
T ss_dssp             -------------------------------
T ss_pred             cEEEEEEEECCCCCCCHHHHHHHHHHhcccc
Confidence            9999999988777778889999999999876

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.97  E-value=7.9e-32  Score=268.76  Aligned_cols=177  Identities=20%  Similarity=0.172  Sum_probs=153.8

Q ss_pred             cCCCCccccccCCcccccccccccccccccccceeeEee-cCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCC
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIF-EHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLP  261 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~  261 (365)
                      ...+..+.+. ||+||++..++...........++|+|+ ++++++|+|+++++++.  +..||+ ++||++++|||++|
T Consensus       324 ~~~~~~~~~~-YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p  400 (617)
T 3rg2_A          324 AEIGCQLQQV-FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQ--GEVGRLMTRGPYTFRGYYKSP  400 (617)
T ss_dssp             HHTCSEEEEE-EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCT--TCCEEEEEECSSSCSCCTTCH
T ss_pred             HHhCCcEEEE-eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCC--CCceEEEecCccccchhcCCh
Confidence            3447788888 9999997655433222223456789997 68899999987766654  478998 99999999999999


Q ss_pred             cccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        262 ARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       262 ~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      +.|+++|..++||+|||+|++++||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++.+++..++.++|++
T Consensus       401 ~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v  480 (617)
T 3rg2_A          401 QHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYL  480 (617)
T ss_dssp             HHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEE
Confidence            99999998899999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             EEcCCCCCCHHHHHHHHHc-ccCCC
Q psy13046        342 KLKENAKLNADDIRTFCKG-KVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~~~~l~~~~~~-~l~~y  365 (365)
                      +..+  ..+.+++++++++ +||.|
T Consensus       481 v~~~--~~~~~~l~~~l~~~~lp~~  503 (617)
T 3rg2_A          481 VVKE--PLRAVQVRRFLREQGIAEF  503 (617)
T ss_dssp             EESS--CCCHHHHHHHHHTTTCCGG
T ss_pred             EeCC--CCCHHHHHHHHHhCCCccc
Confidence            9876  4678899999998 68876

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.97  E-value=1.6e-31  Score=260.17  Aligned_cols=168  Identities=16%  Similarity=0.176  Sum_probs=146.8

Q ss_pred             CCCccccccCCccccccccccc-ccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVV-QSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      .+..+.+. ||+||++..+... .........++|+|+++++++|+|++       .+..||+ ++|+++++|||++|+.
T Consensus       297 ~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-------~~~~GEl~v~g~~~~~gY~~~~~~  368 (501)
T 3ipl_A          297 YNLPIYNS-FGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-------KEGHGELMIKGANVMNGYLYPTDL  368 (501)
T ss_dssp             TTCCEEEE-EEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-------SSCCEEEEEESTTSCSCCSBSTTC
T ss_pred             hCCCEecc-ccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-------CCCccEEEEeccchhhhhCcChhh
Confidence            37788888 9999997654422 22222456789999999999999864       2456998 9999999999999999


Q ss_pred             cccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEE
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL  343 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~  343 (365)
                      |.. |. +|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..|+.++++++.
T Consensus       369 t~~-~~-~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~  446 (501)
T 3ipl_A          369 TGT-FE-NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVS  446 (501)
T ss_dssp             CCS-EE-TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cch-hc-CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEe
Confidence            987 65 8999999999999999999999999999999999999999999999999999999999999899999999987


Q ss_pred             cCCCCCCHHHHHHHHHcccCCC
Q psy13046        344 KENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       344 ~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ..  ..+.++|+++|+++|++|
T Consensus       447 ~~--~~~~~~l~~~l~~~L~~~  466 (501)
T 3ipl_A          447 ES--DISKAQLIAYLSKHLAKY  466 (501)
T ss_dssp             SS--CCCHHHHHHHHHHHSCGG
T ss_pred             CC--CCCHHHHHHHHHhhCccc
Confidence            43  567899999999999876

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.97  E-value=6.1e-32  Score=269.21  Aligned_cols=176  Identities=11%  Similarity=-0.012  Sum_probs=141.8

Q ss_pred             hhccCCCCccccccCCcccccccccccc---cccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccccc
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQ---SFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKS  256 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~g  256 (365)
                      +...+++..+.+. ||+||++.+++...   ........++|+|+++++++|+|++++++.+. +..||+ ++|+++++|
T Consensus       296 ~~~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~-g~~GEl~i~G~~v~~G  373 (620)
T 4dg8_A          296 ALLRHPRLHLVNG-YGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEP-DRAGEIVAFGAGLAQG  373 (620)
T ss_dssp             HHHHCTTCEEEEE-ECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSS-SCCEEEEEEETTCCSE
T ss_pred             HHHhCCCeEEEee-EchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCC-CCceEEEEeccccccc
Confidence            3445788899999 99999987665321   11124456899999999999999877764433 678998 999999999


Q ss_pred             ccCCCcccccccCCC-------CeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeec
Q psy13046        257 KRGLPARVKAPDRKK-------CSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVP  329 (365)
Q Consensus       257 Y~~~~~~~~~~~~~~-------g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~  329 (365)
                      ||++|+.|+++|..+       +||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+
T Consensus       374 Y~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~  453 (620)
T 4dg8_A          374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRE  453 (620)
T ss_dssp             ETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred             cCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEe
Confidence            999999999999643       7999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        330 DERMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       330 ~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ++..++.+++++ ...      ++++++++++||.|
T Consensus       454 ~~~~~~lv~~~~-~~~------~~~~~~l~~~Lp~y  482 (620)
T 4dg8_A          454 RNGVKQLLCAWT-GKA------DASPQALLRQLPTW  482 (620)
T ss_dssp             ETTEEEEEEEEE-ECT------TCCCHHHHHHSCGG
T ss_pred             CCCceEEEEEEe-cCh------HHHHHHHHHhChhh
Confidence            875555444444 332      23344566667665

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.97  E-value=4.2e-32  Score=267.93  Aligned_cols=182  Identities=10%  Similarity=0.091  Sum_probs=91.2

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      .+...++..+.+. ||+||++..++...........++|+|+++++++|+|++++...+. +..||+ ++||++|+|||+
T Consensus       313 ~~~~~~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~-g~~GEl~v~g~~v~~GY~~  390 (562)
T 3ite_A          313 IWSSSDRVALVNV-YGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKK-GMAGELVIEGSLVANGYLN  390 (562)
T ss_dssp             HHTTCSSCEEEEE-ECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCT-TSCEEEEEESTTSCCEESS
T ss_pred             HHhhCCCcEEEEe-eccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCC-CCceEEEEeccccchhhCC
Confidence            4445667888888 9999998766643333335567899999999999999766554443 578998 999999999999


Q ss_pred             CCcccccccCCCC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcC-CCeeEEEEEeecCCCCCcE
Q psy13046        260 LPARVKAPDRKKC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH-PNVLEAYAYGVPDERMGEE  336 (365)
Q Consensus       260 ~~~~~~~~~~~~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~-~~v~~~~v~~~~~~~~g~~  336 (365)
                      +|+.|+..+. +|  ||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+| |.+.+++|++.+++..++.
T Consensus       391 ~p~~t~~~~~-~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~  469 (562)
T 3ite_A          391 RPDAKGFCDI-NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQ  469 (562)
T ss_dssp             CTTCCSEEEE-TTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------------
T ss_pred             CccccccccC-CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcce
Confidence            9999887664 55  999999999999999999999999999999999999999999998 8888999999999887777


Q ss_pred             EEEEEEEcCCCCCC-------------HHHHHHHHHcccCCC
Q psy13046        337 VGISIKLKENAKLN-------------ADDIRTFCKGKVSKF  365 (365)
Q Consensus       337 ~~a~v~~~~~~~~~-------------~~~l~~~~~~~l~~y  365 (365)
                      .+++++...+....             .++|+++|+++|++|
T Consensus       470 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y  511 (562)
T 3ite_A          470 FLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAY  511 (562)
T ss_dssp             ------------------------------------------
T ss_pred             EEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcc
Confidence            66666554332221             248999999999987

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.97  E-value=1.6e-31  Score=268.25  Aligned_cols=176  Identities=14%  Similarity=0.055  Sum_probs=147.7

Q ss_pred             CccccccCCccccccccccccc--ccccccceeeEeecCeeEEEEEc-ccceeccCCceeeEE-eec--CcccccccCCC
Q psy13046        188 QSYFPCCCGKLRIHPFLEVVQS--FECRRYQVVLHIFEHLFLELVLY-IVNSVLYNFKWINQV-SSQ--TMAMKSKRGLP  261 (365)
Q Consensus       188 ~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~  261 (365)
                      ..+.+. ||+||++..++....  ......+++|+|+||++++|+|+ ++++++. .+..||+ ++|  |++++|||++|
T Consensus       413 ~~i~~~-YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~  490 (663)
T 1ry2_A          413 IPIVDT-YWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNH  490 (663)
T ss_dssp             SCEEEC-BCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCH
T ss_pred             ceEEEe-ECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCC-CCcceEEEEecCCCchhcccccCh
Confidence            678888 999999865553322  22346689999999999999998 6665543 2567898 999  68999999999


Q ss_pred             cccccccC--CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        262 ARVKAPDR--KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       262 ~~~~~~~~--~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +.+.+.|.  .+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..|+.++|
T Consensus       491 ~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a  570 (663)
T 1ry2_A          491 DRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAA  570 (663)
T ss_dssp             HHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEE
T ss_pred             HHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEE
Confidence            98887763  3799999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEEcCCCC---C-C------HHHHHHHHHcccCCC
Q psy13046        340 SIKLKENAK---L-N------ADDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~---~-~------~~~l~~~~~~~l~~y  365 (365)
                      ||+++++..   . +      .++|+++|+++|++|
T Consensus       571 ~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~  606 (663)
T 1ry2_A          571 FVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF  606 (663)
T ss_dssp             EEEEC------------CCSHHHHHHHHHHHHTCTT
T ss_pred             EEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCC
Confidence            999987543   2 2      478999999999876

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.97  E-value=1.7e-31  Score=261.81  Aligned_cols=174  Identities=18%  Similarity=0.121  Sum_probs=146.0

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      .+..+.+. ||+||++.++....... ...+++|+|+|+++++|+|+++++++.  +..||+ ++||+++.|||++|+.|
T Consensus       324 ~g~~i~~~-YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~~~i~d~~g~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t  399 (529)
T 2v7b_A          324 FGCEILDG-IGSTEMLHIFLSNRAGA-VEYGTTGRPVPGYEIELRDEAGHAVPD--GEVGDLYIKGPSAAVMYWNNREKS  399 (529)
T ss_dssp             HSCCEEEE-EECTTTSSEEEECCTTC-CCTTSCCEECTTCEEEEECTTSCBCCT--TSCEEEEEECTTCCCCBTTCHHHH
T ss_pred             hCCceeee-EchhhcCceeeccccCC-CccCCcccCCCCCEEEEECCCCCCCCC--CCccEEEEecCCcccccCCChHHH
Confidence            47788888 99999966544332222 456789999999999999987766553  578998 99999999999999999


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEc
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLK  344 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~  344 (365)
                      ++.|. ++||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++. ++..++.++|+|+++
T Consensus       400 ~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~  477 (529)
T 2v7b_A          400 RATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLK  477 (529)
T ss_dssp             HHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEEC
T ss_pred             HHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEec
Confidence            99997 8999999999999999999999999999999999999999999999999999999999 666788899999987


Q ss_pred             CCCCC---CHHHHHHHHHcccCCC
Q psy13046        345 ENAKL---NADDIRTFCKGKVSKF  365 (365)
Q Consensus       345 ~~~~~---~~~~l~~~~~~~l~~y  365 (365)
                      ++...   ..++|+++|+++|++|
T Consensus       478 ~~~~~~~~~~~~l~~~l~~~L~~~  501 (529)
T 2v7b_A          478 REFAPSEILAEELKAFVKDRLAPH  501 (529)
T ss_dssp             TTCCCCHHHHHHHHHHHHTTSCTT
T ss_pred             CCCCcchhHHHHHHHHHHhhcchh
Confidence            65422   2368999999999986

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.97  E-value=8.6e-31  Score=280.94  Aligned_cols=179  Identities=15%  Similarity=0.104  Sum_probs=154.3

Q ss_pred             hccCCCCccccccCCcccccccccccccc---cccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccc
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSF---ECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSK  257 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY  257 (365)
                      ...+++..+.+. ||+||++..++.....   ......++|+|+++++++|+|+++++++.  +..||+ ++|+++++||
T Consensus       741 ~~~~~~~~l~n~-YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~--G~~GEl~i~G~~v~~GY  817 (1304)
T 2vsq_A          741 LRIMGPGKLINC-YGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPF--GAVGELCISGMGVSKGY  817 (1304)
T ss_dssp             HHHHCTTCEEEE-ECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCT--TCCEEEEEEETTCCCCB
T ss_pred             HHhCCCCEEEEe-EChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCC--CCceEEEEeccccCccc
Confidence            345677788898 9999998776633211   11344679999999999999987766554  578998 9999999999


Q ss_pred             cCCCcccccccCC------CCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCC
Q psy13046        258 RGLPARVKAPDRK------KCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDE  331 (365)
Q Consensus       258 ~~~~~~~~~~~~~------~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~  331 (365)
                      +++|+.|+++|..      ++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++
T Consensus       818 ~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~  897 (1304)
T 2vsq_A          818 VNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHE  897 (1304)
T ss_dssp             TTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred             cCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecC
Confidence            9999999998842      4599999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        332 RMGEEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       332 ~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      ..++.++|+|+.+.  ..+.++++++|+++||.|
T Consensus       898 ~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~y  929 (1304)
T 2vsq_A          898 SGDASINAYLVNRT--QLSAEDVKAHLKKQLPAY  929 (1304)
T ss_dssp             SSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGG
T ss_pred             CCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHh
Confidence            88889999998764  467899999999999986

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.95  E-value=2.6e-29  Score=249.42  Aligned_cols=172  Identities=16%  Similarity=0.179  Sum_probs=138.5

Q ss_pred             CCCccccccCCccccccccccccc--------------------------ccccccceeeEeecCeeEEEEEcccceecc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQS--------------------------FECRRYQVVLHIFEHLFLELVLYIVNSVLY  239 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~--------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~  239 (365)
                      ++..+.+. ||+||++.+++....                          .......++|+|+++  ++|+|++++...+
T Consensus       319 ~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~  395 (590)
T 3kxw_A          319 RKEAFYPC-YGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCD  395 (590)
T ss_dssp             CGGGEEEE-EECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCC
T ss_pred             Cccccccc-cccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCC
Confidence            34567888 999999876653211                          111345688999998  8889987443333


Q ss_pred             CCceeeEE-eecCcccccccCCCcccccccCC------CC--eeecCceEEEccCCcEEEEeecCceEEeCceEeChHHH
Q psy13046        240 NFKWINQV-SSQTMAMKSKRGLPARVKAPDRK------KC--SQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI  310 (365)
Q Consensus       240 ~~~~~gei-~~g~~~~~gY~~~~~~~~~~~~~------~g--~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~ei  310 (365)
                       .+..||+ ++||++|+|||++|+.|+++|..      +|  ||+|||+|++| ||+|+|+||+||+||++|+||+|.||
T Consensus       396 -~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eI  473 (590)
T 3kxw_A          396 -FDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDI  473 (590)
T ss_dssp             -TTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHH
T ss_pred             -CCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHH
Confidence             3578998 99999999999999999998863      24  99999999999 99999999999999999999999999


Q ss_pred             HHHH-HcCCCee--EEEEEeecCCCCCcEEEEEEEEcCCC--CCCHHHHHHHHHcccC
Q psy13046        311 EEFI-QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVS  363 (365)
Q Consensus       311 E~~l-~~~~~v~--~~~v~~~~~~~~g~~~~a~v~~~~~~--~~~~~~l~~~~~~~l~  363 (365)
                      |++| ..||.|.  +|+|++++++. ++.++++++++++.  ..+.++++++|+++|+
T Consensus       474 E~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~  530 (590)
T 3kxw_A          474 EFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVY  530 (590)
T ss_dssp             HHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHH
Confidence            9999 7899998  89999998875 67888999887653  3455778888877665

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.91  E-value=1e-24  Score=208.45  Aligned_cols=159  Identities=13%  Similarity=0.136  Sum_probs=124.6

Q ss_pred             CCCccccccCCccccccc-ccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCcc
Q psy13046        186 PGQSYFPCCCGKLRIHPF-LEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPAR  263 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~  263 (365)
                      .+..+.+. ||+||++.. .....    ......+.+.+++.++|+|++.+...+ .+..||+ ++|.            
T Consensus       230 ~g~~v~~~-YG~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~-~g~~Gel~v~~~------------  291 (436)
T 3qov_A          230 LNVKAYNS-FGMTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVP-EGEIGELVLTTL------------  291 (436)
T ss_dssp             HTSEEEEE-EEEGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCS-TTCCEEEEEEES------------
T ss_pred             hCccEEec-CcchhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCC-CCCceEEEEecc------------
Confidence            37788888 999999543 22211    111235677779999999954443333 3578888 7762            


Q ss_pred             cccccCCCCeeecCceEEEccCC------c---EEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046        264 VKAPDRKKCSQRPRYQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       264 ~~~~~~~~g~~~TGD~~~~~~~G------~---l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      +.+.|. ++||+|||+|+++++|      +   ++|+||.||+||++|++|+|.|||++|.+||+|.+++|++.+++..+
T Consensus       292 ~~~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~  370 (436)
T 3qov_A          292 DREMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ  370 (436)
T ss_dssp             SCCSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred             CcCCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence            344453 8999999999999998      5   69999999999999999999999999999999999999999988888


Q ss_pred             cEEEEEEEEcCCCCCC----HHHHHHHHHcccCC
Q psy13046        335 EEVGISIKLKENAKLN----ADDIRTFCKGKVSK  364 (365)
Q Consensus       335 ~~~~a~v~~~~~~~~~----~~~l~~~~~~~l~~  364 (365)
                      +.++|+|+++ +...+    .++++++++++|+.
T Consensus       371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~  403 (436)
T 3qov_A          371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKD  403 (436)
T ss_dssp             EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEEc-CccccchhhHHHHHHHHHHHHHH
Confidence            9999999998 55454    56788888877654

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.90  E-value=1.5e-24  Score=201.88  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=116.9

Q ss_pred             CCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      .+..+.+. ||+||++..+...... ....+.+|.+.|++++.+.+            .||+ ++|+.            
T Consensus       171 ~~~~~~~~-YG~TEt~~~~~~~~~~-~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~------------  224 (358)
T 4gs5_A          171 LAMPVYQS-YGMTETVSHVALKALN-GPEASELYVFLPGIQYGVDE------------RGCLHISGAV------------  224 (358)
T ss_dssp             CSSCEEEE-EECGGGSSEEEEEECS-STTCCSCEEECTTCEEEECT------------TSEEEEESGG------------
T ss_pred             cCceEEec-cccccccceeeccccc-ccccceeeccCCCeEEEecC------------cCceEEeccc------------
Confidence            46778888 9999998766543322 23456789999998887533            2565 65542            


Q ss_pred             ccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHH---cCCCeeEEEEE-eecCCCCCcEEEEE
Q psy13046        265 KAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ---THPNVLEAYAY-GVPDERMGEEVGIS  340 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~---~~~~v~~~~v~-~~~~~~~g~~~~a~  340 (365)
                          ..+|||+|||+|++|+|| ++|+||+||+||++|+||+|.|||++|.   +||.|.+++|+ +.+++..|+.++|+
T Consensus       225 ----~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~  299 (358)
T 4gs5_A          225 ----TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLV  299 (358)
T ss_dssp             ----GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEE
T ss_pred             ----ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEE
Confidence                237899999999999988 6677999999999999999999998774   68999998886 67788889999998


Q ss_pred             EEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      |+...+ ....++|+++|+++|++|
T Consensus       300 v~~~~~-~~~~~~l~~~l~~~L~~~  323 (358)
T 4gs5_A          300 IENAMP-EALTERLTAEIRSRVSTY  323 (358)
T ss_dssp             EESCCC-HHHHHHHHHHHHHHSCGG
T ss_pred             EECCCC-CcCHHHHHHHHHhhCCCC
Confidence            876543 345578999999999876

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.90  E-value=3.8e-24  Score=204.93  Aligned_cols=160  Identities=15%  Similarity=0.199  Sum_probs=121.5

Q ss_pred             CCccccccCCcccc-cccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        187 GQSYFPCCCGKLRI-HPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       187 ~~~~~~~~yG~tE~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      +..+.+. ||+||+ ++.+......  ...+ .+.+.+++.++|+|++++...+ .+..||+ ++|            .+
T Consensus       237 g~~v~~~-YG~TE~~g~~~~~~~~~--~~~g-~~~~~~~~~~~i~d~~~g~~~~-~G~~Gel~v~~------------~t  299 (443)
T 2y4o_A          237 GIDALDI-YGLSEVMGPGVACECVE--TKDG-PVIWEDHFYPEIIDPVTGEVLP-DGSQGELVFTS------------LT  299 (443)
T ss_dssp             TCEEEEE-EEETTTTEEEEEEECTT--TCCS-EEECTTTEEEEEECTTTCCBCC-TTCCEEEEEEE------------SS
T ss_pred             CcCEEec-cCchhhcCCeEEeccCC--CCCc-eEEccCCeEEEEEcCCCCCCCC-CCCceEEEEeC------------CC
Confidence            7788888 999997 4423221111  1111 4556679999999975433333 3568888 765            23


Q ss_pred             ccccCCCCeeecCceEEEccC-CcE-----EEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        265 KAPDRKKCSQRPRYQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~~-G~l-----~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      .+.| +++||+|||+|+++++ |++     +|+||.||+||++|++|+|.|||++|.+||+|.++++++.+++..++.+.
T Consensus       300 ~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~  378 (443)
T 2y4o_A          300 KEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLD  378 (443)
T ss_dssp             CSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEE
T ss_pred             cccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEE
Confidence            4445 3899999999999999 987     89999999999999999999999999999999999999988877778899


Q ss_pred             EEEEEcC--C---CCCCHHHHHHHHHcccCC
Q psy13046        339 ISIKLKE--N---AKLNADDIRTFCKGKVSK  364 (365)
Q Consensus       339 a~v~~~~--~---~~~~~~~l~~~~~~~l~~  364 (365)
                      ++|++++  +   ...+.++++++|+++|+.
T Consensus       379 a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~  409 (443)
T 2y4o_A          379 LAVELRSEAAASVTDGERAALARELQHRIKT  409 (443)
T ss_dssp             EEEEECHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCcccccchhhHHHHHHHHHHHHHHH
Confidence            9999875  2   223446788888877754

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.90  E-value=2.2e-24  Score=206.30  Aligned_cols=160  Identities=15%  Similarity=0.108  Sum_probs=123.0

Q ss_pred             CCccccccCCcccc-cccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCCCccc
Q psy13046        187 GQSYFPCCCGKLRI-HPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGLPARV  264 (365)
Q Consensus       187 ~~~~~~~~yG~tE~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~~~~~  264 (365)
                      +..+.+. ||+||+ ++.+......   .....+.+.+++.++|+|++++...+ .+..||+ ++|            .+
T Consensus       235 g~~v~~~-YG~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~-~g~~Gel~v~~------------~t  297 (437)
T 2y27_A          235 GIDAVDI-YGLSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLP-DGELGELVFTS------------LT  297 (437)
T ss_dssp             TSEEEEE-EEETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCC-TTCCEEEEEEE------------SS
T ss_pred             CcCEEec-CCchhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCC-CCCccEEEEec------------CC
Confidence            7788888 999998 4423321111   11124666789999999976443333 3568888 766            23


Q ss_pred             ccccCCCCeeecCceEEEcc-CCcE-----EEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEE
Q psy13046        265 KAPDRKKCSQRPRYQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVG  338 (365)
Q Consensus       265 ~~~~~~~g~~~TGD~~~~~~-~G~l-----~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~  338 (365)
                      .+.|. ++||+|||+|++|+ +|++     +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++
T Consensus       298 ~~~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~  376 (437)
T 2y27_A          298 KEALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLT  376 (437)
T ss_dssp             CSSSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEE
T ss_pred             cCCch-hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEE
Confidence            44553 89999999999999 6986     89999999999999999999999999999999999999988877788999


Q ss_pred             EEEEEcCCCC---CCHHHHHHHHHcccCC
Q psy13046        339 ISIKLKENAK---LNADDIRTFCKGKVSK  364 (365)
Q Consensus       339 a~v~~~~~~~---~~~~~l~~~~~~~l~~  364 (365)
                      |+|+++++..   .+.++++++|+++|+.
T Consensus       377 a~v~~~~~~~~~~~~~~~l~~~l~~~l~~  405 (437)
T 2y27_A          377 LNVEPCPETAPDTAAIQVAKQALAYDIKS  405 (437)
T ss_dssp             EEECBCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCccchhhhHHHHHHHHHHHHHH
Confidence            9999876543   2346788888887764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.87  E-value=1.5e-21  Score=189.94  Aligned_cols=143  Identities=26%  Similarity=0.333  Sum_probs=128.4

Q ss_pred             ccCCCCCCceEEEE-ecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFR-HFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~-~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.|+.|||+++ ++..|.+|++..      |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus       343 ~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~  422 (504)
T 1t5h_X          343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG  422 (504)
T ss_dssp             CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT
T ss_pred             CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH
Confidence            56677899999999 889999999873      56899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.+.++|+++++...+.+++.+++++ +++.++.+..     +.+.+.+|++.+||+
T Consensus       423 ~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  493 (504)
T 1t5h_X          423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR-----YFILDQLPKNALNKV  493 (504)
T ss_dssp             TSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSE-----EEECSCCCBCTTSCB
T ss_pred             hCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceE-----EEEhhhCCCCCCCCE
Confidence            999999999999999888999999999988766788899999998 7888777643     445678999999998

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.86  E-value=1.5e-21  Score=189.99  Aligned_cols=143  Identities=24%  Similarity=0.298  Sum_probs=129.6

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.|+.|||+++|+.++.+|+++.      | .++||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus       340 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~  419 (503)
T 4fuq_A          340 KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID  419 (503)
T ss_dssp             CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH
T ss_pred             CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH
Confidence            56788899999999999999999873      4 5899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.+.++++.+++...+.+++.+++++.++.++.+..     +.+.+.+|++.+||+
T Consensus       420 ~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  489 (503)
T 4fuq_A          420 AMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKK-----VIFVDDLPRNTMGKV  489 (503)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSE-----EEEESCCCBCTTSCB
T ss_pred             hCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCE-----EEEECCCCCCcccce
Confidence            9999999999999998888999999999887778888999999999888776643     345678999999998

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.86  E-value=2.5e-21  Score=189.85  Aligned_cols=143  Identities=19%  Similarity=0.161  Sum_probs=129.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|||+++|+.++.+|+++.      | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+++.
T Consensus       375 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~  454 (536)
T 3ni2_A          375 ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI  454 (536)
T ss_dssp             CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH
T ss_pred             cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH
Confidence            55677899999999999999999873      4 6899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.++++++..++...+.+++.++++++++.++.+..     +.+.+.+|++.+||+
T Consensus       455 ~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~-----i~~v~~lP~t~~GKi  524 (536)
T 3ni2_A          455 AHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKR-----VFFIEAIPKAPSGKI  524 (536)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSE-----EEECSCCCBCTTSCB
T ss_pred             hCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccE-----EEEEecCCCCCCCCe
Confidence            9999999999999998888999999998887777889999999999988777643     446678999999998

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.85  E-value=5.5e-21  Score=187.47  Aligned_cols=142  Identities=20%  Similarity=0.232  Sum_probs=125.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.|+.|||+++|+.++.||+++.      | .++||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus       371 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~  450 (539)
T 1mdb_A          371 RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL  450 (539)
T ss_dssp             CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT
T ss_pred             CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH
Confidence            56677899999999999999999873      4 6899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.++++++.+. ...+.+++.+++++. ++.++.+..     +.+.+.+|++.+||+
T Consensus       451 ~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  520 (539)
T 1mdb_A          451 AHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDR-----VEFVESFPQTGVGKV  520 (539)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSE-----EEECSSCCBCTTSCB
T ss_pred             hCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCE-----EEEeccCCCCCCcCE
Confidence            999999999999999888888999988874 346778999999987 887776643     345678999999998

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.84  E-value=6.1e-21  Score=187.51  Aligned_cols=144  Identities=17%  Similarity=0.172  Sum_probs=128.4

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|||+++++.++.+|+++.      | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus       382 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~  461 (548)
T 2d1s_A          382 KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL  461 (548)
T ss_dssp             CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH
T ss_pred             ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH
Confidence            46677889999999999999999873      4 6899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.+.++|+++++...+.+++.+++++++..+..+.    ..+.+.+.+|++.+||+
T Consensus       462 ~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~----~~i~~v~~lP~t~~GKi  532 (548)
T 2d1s_A          462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLR----GGVRFVDEVPKGLTGKI  532 (548)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCT----TCEEECSSCCBCTTSCB
T ss_pred             hCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhcccccccc----ccEEEccCCCCCCcchh
Confidence            999999999999999888889999999887766788899999999988776664    13445678999999998

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.84  E-value=1.4e-20  Score=185.99  Aligned_cols=143  Identities=23%  Similarity=0.232  Sum_probs=116.2

Q ss_pred             ccCCCCCCceEEEEe-----cCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRH-----FDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~-----~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +.++.++.|||++++     ...+.+|+++.      |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||
T Consensus       412 ~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE  491 (580)
T 3etc_A          412 RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVE  491 (580)
T ss_dssp             CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHH
T ss_pred             CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHH
Confidence            456778999999997     67889999873      6789999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC---HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~---~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      ++|.+||.|.+++|++++++..++.+.++|++.++....   .+++.+++++.++.++.++.     +.+.+.+|++.+|
T Consensus       492 ~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-----i~~v~~lP~t~sG  566 (580)
T 3etc_A          492 SALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRI-----IEFVPELPKTISG  566 (580)
T ss_dssp             HHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSE-----EEEECC-------
T ss_pred             HHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeE-----EEEeCCCCCCCCc
Confidence            999999999999999999998899999999998765433   35788888888877766643     4466789999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       567 Ki  568 (580)
T 3etc_A          567 KI  568 (580)
T ss_dssp             --
T ss_pred             CC
Confidence            98

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.84  E-value=1.1e-20  Score=184.43  Aligned_cols=135  Identities=24%  Similarity=0.332  Sum_probs=121.5

Q ss_pred             CceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcceE
Q psy13046         18 KKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEA   91 (365)
Q Consensus        18 ~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~   91 (365)
                      .|||+++++.++.+|+++.      |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.+||.|.++
T Consensus       362 ~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~  441 (517)
T 3r44_A          362 EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEV  441 (517)
T ss_dssp             EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEE
T ss_pred             CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEE
Confidence            6999999999999999873      6789999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         92 YAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        92 ~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +|++++++..++.+.+++ ..++...+.+++.+++++.++.++.+..     +.+.+.+|++.+||+
T Consensus       442 ~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  502 (517)
T 3r44_A          442 AVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKK-----VIFAEAIPRNPTGKI  502 (517)
T ss_dssp             EEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSE-----EEECSCCCBCTTCCB
T ss_pred             EEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCE-----EEEECCCCCCCCcCc
Confidence            999999988888887777 5555567789999999999988877743     346678999999998

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.84  E-value=3.4e-21  Score=189.41  Aligned_cols=143  Identities=22%  Similarity=0.251  Sum_probs=99.3

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c---ccc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L---LLF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~---~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +.++.|+.|||+++|+.++.+|+++.      |   ..+  ||+|||++++|+||+++|.||.||+||++|++|+|.+||
T Consensus       376 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE  455 (549)
T 3g7s_A          376 RELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE  455 (549)
T ss_dssp             CEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHH
T ss_pred             cCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHH
Confidence            45677889999999999999999873      2   456  999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCC--CCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN--AKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS  157 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~--~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk  157 (365)
                      ++|.+||.|.+++|++++++..++.+.++++++++  ...+.+++.++++++++.++.+.     .+.+.+.+|++.+||
T Consensus       456 ~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~lP~t~~GK  530 (549)
T 3g7s_A          456 ALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVR-----EVEFVEELPRTASGK  530 (549)
T ss_dssp             HHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----C-----CCCEEEECC------
T ss_pred             HHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccce-----EEEEeccCCCCCCcC
Confidence            99999999999999999998888889999998876  55678899999999888766653     334557799999999


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus       531 i  531 (549)
T 3g7s_A          531 L  531 (549)
T ss_dssp             -
T ss_pred             E
Confidence            8

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.83  E-value=3.6e-20  Score=180.23  Aligned_cols=138  Identities=23%  Similarity=0.246  Sum_probs=118.5

Q ss_pred             CCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeec-CcEEEECCEEechHhHHHHHhcCCC
Q psy13046         16 RQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRI-KDMIIRGGENIYPKEIEEFIQTHPN   87 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~-~d~i~~~G~~v~p~~ie~~l~~~~~   87 (365)
                      ++.|||+++++..+.+|+++.      | ..+||+|||++++|+||+++|.||. |++||++|++|+|.+||++|.+||.
T Consensus       351 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~  430 (505)
T 3nyq_A          351 ESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPE  430 (505)
T ss_dssp             CCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTT
T ss_pred             CceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcC
Confidence            689999999999999999873      4 6899999999999999999999998 5999999999999999999999999


Q ss_pred             cceEEEEEeeCCCCCceEEEEEEEcC-CCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         88 VLEAYAYGVPDERMGEEVGISIKLKE-NAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        88 V~~~~v~~vp~~~~~~~~~~~v~~~~-~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.+++|++++++..++.+++++++.+ ....+.+++.++++++++.++.+..     +.+.+.+|++.+||+
T Consensus       431 V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  497 (505)
T 3nyq_A          431 VREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRV-----VRYLDAVPRNDMGKI  497 (505)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSE-----EEECSCCCC------
T ss_pred             ccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccE-----EEEECCCCCCCCcCe
Confidence            99999999999888999999999876 4456778999999999988887753     346688999999998

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.83  E-value=4.4e-20  Score=181.93  Aligned_cols=141  Identities=11%  Similarity=0.048  Sum_probs=123.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-c------cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-L------LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE   77 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~------~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~   77 (365)
                      +.++.++.|||+++|+.+|.||+++.      | .      .+||+|||++++|+||+++|.||.||+||++|++|+|.+
T Consensus       365 ~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~e  444 (563)
T 1amu_A          365 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE  444 (563)
T ss_dssp             CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred             CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHH
Confidence            45677889999999999999999773      3 1      359999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046         78 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS  157 (365)
Q Consensus        78 ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk  157 (365)
                      ||++|.+||.|.+++|++++++..++.++++++...  ..+.+++.+++++.++.++.+..     +.+.+.+|++.+||
T Consensus       445 IE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~-----i~~v~~lP~t~~GK  517 (563)
T 1amu_A          445 VESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSY-----FIQLDKMPLTSNGK  517 (563)
T ss_dssp             HHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSE-----EEECSSCCBCTTSS
T ss_pred             HHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcE-----EEEecccCCCCCcC
Confidence            999999999999999999999888888888888764  35678999999999988776643     34667899999999


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus       518 i  518 (563)
T 1amu_A          518 I  518 (563)
T ss_dssp             B
T ss_pred             h
Confidence            9

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.83  E-value=3.6e-20  Score=185.59  Aligned_cols=143  Identities=18%  Similarity=0.246  Sum_probs=123.2

Q ss_pred             ccCCCCCCceEEEEe--cCchhhhhhc-------ccc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRH--FDSFLLFVEL-------CLL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~--~~~~~~y~~~-------~~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      ++++.++.|||++++  +..+.+|++.       +|.  .+||+|||++++|+||+++|.||.||+||++|++|+|.|||
T Consensus       454 ~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE  533 (652)
T 1pg4_A          454 HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE  533 (652)
T ss_dssp             CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHH
T ss_pred             CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHH
Confidence            455667889999999  6899999976       232  68999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC---HHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN---ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~---~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      ++|.+||.|.+++|++++++..++.++++|+++++...+   .+++.+++++.+..++.+..     +.+.+.+|++.+|
T Consensus       534 ~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-----i~~v~~lP~T~sG  608 (652)
T 1pg4_A          534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV-----LHWTDSLPKTRSG  608 (652)
T ss_dssp             HHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSE-----EEECSCCCBCTTS
T ss_pred             HHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeE-----EEEcCCCCCCCCc
Confidence            999999999999999999988889999999998765444   35778888887777666643     4466789999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       609 Ki  610 (652)
T 1pg4_A          609 KI  610 (652)
T ss_dssp             CB
T ss_pred             cc
Confidence            99

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.82  E-value=3.9e-20  Score=182.58  Aligned_cols=143  Identities=24%  Similarity=0.234  Sum_probs=122.0

Q ss_pred             ccCCCCCCceEEEE-----ecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFR-----HFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~-----~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +.++.|+.|||+++     ++.++.+|+++.      |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||
T Consensus       393 ~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE  472 (570)
T 3c5e_A          393 NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVE  472 (570)
T ss_dssp             CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHH
T ss_pred             CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHH
Confidence            56677889999999     889999999873      5689999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC-CC----HHHHHHHHHhhhhhcccceEEEeeeEEeeecccccc
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK-LN----ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYR  154 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~-~~----~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~  154 (365)
                      ++|.+||.|.+++|++++++..++.+.++|++.++.. ..    .+++.+++++.++.++.+..     +.+.+.+|++.
T Consensus       473 ~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~  547 (570)
T 3c5e_A          473 NALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRK-----IEFVLNLPKTV  547 (570)
T ss_dssp             HHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSE-----EEEESCCCBCT
T ss_pred             HHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcE-----EEEeccCCCCC
Confidence            9999999999999999999888888999998876431 12    35677777777776666543     44567899999


Q ss_pred             Ccee
Q psy13046        155 SAST  158 (365)
Q Consensus       155 ~gk~  158 (365)
                      +||+
T Consensus       548 ~GKi  551 (570)
T 3c5e_A          548 TGKI  551 (570)
T ss_dssp             TCCB
T ss_pred             CcCC
Confidence            9998

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.81  E-value=9.4e-20  Score=177.11  Aligned_cols=137  Identities=18%  Similarity=0.249  Sum_probs=115.7

Q ss_pred             CCCCceEEEEecCchhhhhhcc-----cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcc
Q psy13046         15 SRQKKAIHFRHFDSFLLFVELC-----LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL   89 (365)
Q Consensus        15 ~~~~g~~~~~~~~~~~~y~~~~-----~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~   89 (365)
                      .++.|||+++++..+.+|++..     |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+++.+||.|.
T Consensus       345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~  424 (501)
T 3ipl_A          345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGIS  424 (501)
T ss_dssp             SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEE
T ss_pred             CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCcc
Confidence            4568999999999999999774     46799999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         90 EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        90 ~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++|++++++..++.+.++++...  ..+.+++.++++++++.++.+..     +.+.+.+|++.+||+
T Consensus       425 ~~~vv~~~~~~~g~~~~a~v~~~~--~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  486 (501)
T 3ipl_A          425 DAVCVGHPDDTWGQVPKLYFVSES--DISKAQLIAYLSKHLAKYKVPKH-----FEKVDTLPYTSTGKL  486 (501)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSE-----EEECSSCC-------
T ss_pred             EEEEEEEecccCCceEEEEEEeCC--CCCHHHHHHHHHhhCccccCCCE-----EEEecccCCCCCCCE
Confidence            999999999888888888887643  46788999999999988777643     446688999999998

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.81  E-value=5.7e-21  Score=186.06  Aligned_cols=143  Identities=24%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeec--CcEEEECCEEechHhHHHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRI--KDMIIRGGENIYPKEIEEFI   82 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~--~d~i~~~G~~v~p~~ie~~l   82 (365)
                      ++++.|+.|||+++++.++.+|++..      |..+||+|||++++|+||+++|.||.  ||+||++|++|+|.+||+++
T Consensus       340 ~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l  419 (509)
T 3ivr_A          340 RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGAL  419 (509)
T ss_dssp             CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC----------------------
T ss_pred             CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHH
Confidence            56678899999999999999999873      67899999999999999999999999  99999999999999999999


Q ss_pred             hcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         83 QTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        83 ~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+||.|.+++|++++++..++.+.+++++.++...+.+++.+++++.++.++.+.     .+.+.+.+|++.+||+
T Consensus       420 ~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~lP~t~~GKi  490 (509)
T 3ivr_A          420 KQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPK-----HVVFVEALPKDAKGAI  490 (509)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCc-----EEEEecCCCCCCCCCc
Confidence            9999999999999999888888999998887766677888889988887766553     3445678999999998

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.81  E-value=1.6e-19  Score=175.93  Aligned_cols=142  Identities=13%  Similarity=-0.022  Sum_probs=119.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c--ccc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L--LLF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE   80 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~--~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~   80 (365)
                      ++++.++.|||+++|+.++.+|+++.      |  ..+  ||+|||++++ +||+++|.||.||+||++|++|+|.+||+
T Consensus       337 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~  415 (511)
T 3e7w_A          337 QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEF  415 (511)
T ss_dssp             CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHH
T ss_pred             CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHH
Confidence            56678899999999999999999873      2  223  7999999999 59999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH----HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         81 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        81 ~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      ++.+||.|.+++|++++++..++.+.++++..++.....    +++.+++++.++.++.+..     +.+.+.+|++.+|
T Consensus       416 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-----~~~v~~lP~t~~G  490 (511)
T 3e7w_A          416 HVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRK-----FIYQDHIQMTANG  490 (511)
T ss_dssp             HHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSE-----EEECSCCCBCTTS
T ss_pred             HHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCee-----EEEeccCCCCCCc
Confidence            999999999999999998888889999999887654443    4567777777766666543     4466889999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       491 Ki  492 (511)
T 3e7w_A          491 KI  492 (511)
T ss_dssp             CB
T ss_pred             Cc
Confidence            98

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.81  E-value=9.2e-20  Score=177.67  Aligned_cols=142  Identities=11%  Similarity=0.006  Sum_probs=119.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE   80 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~   80 (365)
                      +.+++++.|||+++|+.++.+|+++.      |    ..+||+|||++++ +||+++|.||.||+||++|++|+|.+||+
T Consensus       338 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~  416 (512)
T 3fce_A          338 TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEH  416 (512)
T ss_dssp             CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHH
T ss_pred             CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHH
Confidence            45677899999999999999999873      2    3569999999999 79999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH----HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         81 FIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA----DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        81 ~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~----~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      +|.+||.|.+++|+++++...++.+.++++..+....+.    +++.+++++.++.++.+.     .+.+.+.+|++.+|
T Consensus       417 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~~~~~~~lP~t~~G  491 (512)
T 3fce_A          417 HLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPR-----KFMYQSSIPMTPNG  491 (512)
T ss_dssp             HHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCS-----EEEECSCCCBCTTS
T ss_pred             HHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCe-----EEEEecccCCCCCc
Confidence            999999999999999998877888889988876544443    356666777776666554     34467889999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       492 Ki  493 (512)
T 3fce_A          492 KV  493 (512)
T ss_dssp             SB
T ss_pred             Ch
Confidence            98

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.81  E-value=2.9e-19  Score=177.97  Aligned_cols=141  Identities=27%  Similarity=0.281  Sum_probs=125.0

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ++++.|+.|||+++|+.+++||+++.      | .++||+|||++++++||+++|.||.||+||++|++|+|.+||++|.
T Consensus       375 ~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~  454 (617)
T 3rg2_A          375 NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL  454 (617)
T ss_dssp             CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT
T ss_pred             CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH
Confidence            56788899999999999999999873      4 6899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++.+++..++.++++++..+  ..+.+++.+++++ .++.++-+..     +.+.+.+|++.+||+
T Consensus       455 ~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~-----~~~v~~lP~t~~GKi  523 (617)
T 3rg2_A          455 RHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDR-----VECVDSLPLTAVGKV  523 (617)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSE-----EEECSCCCBCTTSSB
T ss_pred             hCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcE-----EEEecccCCCCCCCC
Confidence            999999999999999888888888888876  3567889999988 5777776643     335678999999999

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.81  E-value=7.5e-21  Score=187.78  Aligned_cols=143  Identities=15%  Similarity=0.083  Sum_probs=44.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-c--------cccEecCceEEEecCCcEEEEeecCcEEEECCEEech
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-L--------LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYP   75 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~--------~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p   75 (365)
                      +.++.|+.|||+++|+.+|.+|+++.      | .        .+||+|||++++|+||+++|.||+||+||++|+||+|
T Consensus       402 ~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p  481 (570)
T 4gr5_A          402 KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEP  481 (570)
T ss_dssp             CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------
T ss_pred             CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCH
Confidence            45677889999999999999999862      2 1        3799999999999999999999999999999999999


Q ss_pred             HhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCC-CCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeecccccc
Q psy13046         76 KEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKEN-AKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYR  154 (365)
Q Consensus        76 ~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~-~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~  154 (365)
                      .+||++|.+||.|.+++|++++++..++.++++++..+. ...+.+++.++++++++.++.+.     .+.+.+.+|++.
T Consensus       482 ~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~v~~lP~t~  556 (570)
T 4gr5_A          482 GEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPV-----ECVPVDELPRTP  556 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCc-----EEEEcccCCCCC
Confidence            999999999999999999999988788888888887653 34556788888888877665553     344567899999


Q ss_pred             Ccee
Q psy13046        155 SAST  158 (365)
Q Consensus       155 ~gk~  158 (365)
                      +||+
T Consensus       557 ~GKi  560 (570)
T 4gr5_A          557 NGKL  560 (570)
T ss_dssp             ----
T ss_pred             CcCc
Confidence            9998

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.80  E-value=1.2e-20  Score=185.25  Aligned_cols=142  Identities=26%  Similarity=0.238  Sum_probs=48.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.|+.|||+++++.++.+|++..      | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus       380 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~  459 (544)
T 3o83_A          380 REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL  459 (544)
T ss_dssp             CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------------
T ss_pred             CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH
Confidence            55678899999999999999999873      4 6899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.++++++..+ ...+.+.+.+++++ .++.++.+     ..+.+.+.+|++.+||+
T Consensus       460 ~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P-----~~i~~v~~lP~t~~GKi  529 (544)
T 3o83_A          460 LHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLP-----DQIKLIESLPLTAVGKV  529 (544)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             hCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCC-----cEEEEeccCCCCCCCCC
Confidence            999999999999999888888888888765 33445667777776 56655544     34445678999999998

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.80  E-value=8.9e-21  Score=186.45  Aligned_cols=144  Identities=19%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|||+++|+.++.+|+++.      | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.
T Consensus       380 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~  459 (550)
T 3rix_A          380 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL  459 (550)
T ss_dssp             CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------------
T ss_pred             cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH
Confidence            56677899999999999999999873      4 6899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.++++|++.++...+.+++.+++++++..+..+.    ..+.+.+.+|++.+||+
T Consensus       460 ~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~i~~v~~lP~t~~GKi  530 (550)
T 3rix_A          460 QHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLR----GGVVFVDEVPKGLTGKL  530 (550)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             hCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccC----CceEEEeecCCCCCcce
Confidence            999999999999999888899999998887766667788888887776543221    23445678999999998

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.79  E-value=1.2e-19  Score=177.14  Aligned_cols=143  Identities=15%  Similarity=0.052  Sum_probs=111.0

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c----ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L----LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEE   80 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~----~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~   80 (365)
                      +.++.++.|||+++++.++.+|+++.      |    ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+
T Consensus       341 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~  420 (521)
T 3l8c_A          341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQ  420 (521)
T ss_dssp             CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHH
T ss_pred             CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHH
Confidence            45677889999999999999999873      2    3579999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcceEEEEEeeCCCC-CceEEEEEEEcCCCCC--C-----HHHHHHHHHhhhhhcccceEEEeeeEEeeecccc
Q psy13046         81 FIQTHPNVLEAYAYGVPDERM-GEEVGISIKLKENAKL--N-----ADDIRTFCKGKVKRKISCIFIIIVRISCECILLK  152 (365)
Q Consensus        81 ~l~~~~~V~~~~v~~vp~~~~-~~~~~~~v~~~~~~~~--~-----~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  152 (365)
                      +|.+||.|.++++++.+++.. ++.+.++++++++...  +     .+++.+++++.++.++.+.     .+.+.+.+|+
T Consensus       421 ~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~-----~i~~v~~lP~  495 (521)
T 3l8c_A          421 QLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPS-----KFLYRDSLPL  495 (521)
T ss_dssp             HHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCS-----EEEECSSCCB
T ss_pred             HHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCe-----EEEEecccCC
Confidence            999999999999999886543 5778888888875321  1     3456666666666665553     3446788999


Q ss_pred             ccCcee
Q psy13046        153 YRSAST  158 (365)
Q Consensus       153 ~~~gk~  158 (365)
                      +.+||+
T Consensus       496 t~~GKi  501 (521)
T 3l8c_A          496 TPNGKI  501 (521)
T ss_dssp             CTTSSB
T ss_pred             CCCcCc
Confidence            999998

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.79  E-value=4.2e-20  Score=181.29  Aligned_cols=136  Identities=18%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             CCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCcc
Q psy13046         17 QKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVL   89 (365)
Q Consensus        17 ~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~   89 (365)
                      +.|||+++|+.++.+|+++.      | .++||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.+||.|.
T Consensus       382 ~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~  461 (541)
T 1v25_A          382 ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVK  461 (541)
T ss_dssp             CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC--------
T ss_pred             cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCce
Confidence            58999999999999999873      4 3899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHh-hhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         90 EAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKG-KVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        90 ~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +++|++++++..++.+.++|+++ +...+.+++.+++++ .++.++.+..     +.+.+.+|++.+||+
T Consensus       462 ~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  525 (541)
T 1v25_A          462 EAAVVAIPHPKWQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDA-----YVFAEEIPRTSAGKF  525 (541)
T ss_dssp             --CEEEEECSSSSEEEEECC--------------------CCCTTTSCSB-----C--------------
T ss_pred             EEEEEEecCCCcCceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcE-----EEEeCCCCCCCccCe
Confidence            99999999988888888888876 333455778888887 6776665533     335567999999998

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.79  E-value=3.3e-19  Score=174.41  Aligned_cols=142  Identities=20%  Similarity=0.177  Sum_probs=115.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +++++|+.|||+++++..+.+|++..      |..+||+|||++++|+||+++|.||.||+||++|++|+|.+||+++.+
T Consensus       371 ~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~  450 (529)
T 2v7b_A          371 HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ  450 (529)
T ss_dssp             CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTT
T ss_pred             CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHh
Confidence            45678899999999999999999873      568999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCC---CHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKL---NADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~---~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ||.|.+++|+++ ++..++.+.+++++.++...   ..+++.+++++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       451 ~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~-----~i~~v~~lP~t~~GKi  521 (529)
T 2v7b_A          451 HDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPR-----DIVFVDDLPKTATGKI  521 (529)
T ss_dssp             STTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCS-----EEEEESCCCBCTTSCB
T ss_pred             CCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCe-----EEEEeccCCCCCccch
Confidence            999999999999 55567788888888765321   23567888888777766553     3345678999999998

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.78  E-value=2.6e-19  Score=179.60  Aligned_cols=142  Identities=19%  Similarity=0.188  Sum_probs=117.8

Q ss_pred             cCCC-CCCceEEEEe--cCchhhhhhcc-------cc--cccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         12 QHSS-RQKKAIHFRH--FDSFLLFVELC-------LL--LFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        12 ~~~~-~~~g~~~~~~--~~~~~~y~~~~-------~~--~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      +++. ++.|||++++  +..+.+|+++.       +.  .+||+|||++++|+||+++|.||.||+||++|++|+|.|||
T Consensus       463 ~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE  542 (663)
T 1ry2_A          463 ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE  542 (663)
T ss_dssp             CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHH
T ss_pred             cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHH
Confidence            3344 6789999999  58999999772       32  68999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC---C-C------HHHHHHHHHhhhhhcccceEEEeeeEEeeec
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAK---L-N------ADDIRTFCKGKVKRKISCIFIIIVRISCECI  149 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~---~-~------~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~  149 (365)
                      ++|.+||.|.+++|++++++..++.++++|+++++..   . +      .+++.+++++.+..++.+..     +.+.+.
T Consensus       543 ~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~-----i~~v~~  617 (663)
T 1ry2_A          543 AAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKL-----IILVDD  617 (663)
T ss_dssp             HHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSE-----EEECSC
T ss_pred             HHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeE-----EEEcCC
Confidence            9999999999999999999888889999999876533   1 1      46777778877777666643     446678


Q ss_pred             cccccCcee
Q psy13046        150 LLKYRSAST  158 (365)
Q Consensus       150 l~~~~~gk~  158 (365)
                      +|++.+||+
T Consensus       618 lP~T~sGKi  626 (663)
T 1ry2_A          618 LPKTRSGKI  626 (663)
T ss_dssp             CCBCTTSCB
T ss_pred             CCCCCccCc
Confidence            999999999

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.77  E-value=1.1e-19  Score=190.29  Aligned_cols=143  Identities=18%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.|||+++|+.++.+|+++.      | ..+||+|||++++|+||+++|.||.||+||++|++|+|.+||.+|.
T Consensus       422 ~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~  501 (979)
T 3tsy_A          422 DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI  501 (979)
T ss_dssp             CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------
T ss_pred             CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH
Confidence            56678899999999999999999873      4 6899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.++++|+..++...+.+++.+++++.++.++.+.     .+.+.+.+|++.+||+
T Consensus       502 ~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~-----~i~~v~~lP~t~~GKi  571 (979)
T 3tsy_A          502 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRIN-----KVFFTESIPKAPSGKI  571 (979)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             hCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCe-----EEEEeCCcCcCCCCCe
Confidence            999999999999999888888889988877666667788888888887766553     3445678999999998

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.75  E-value=2.2e-19  Score=173.51  Aligned_cols=104  Identities=8%  Similarity=-0.050  Sum_probs=83.0

Q ss_pred             CCCccccccCCccccccccccccccc------------------------ccccceeeEeecCeeEEEEEcccceeccCC
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFE------------------------CRRYQVVLHIFEHLFLELVLYIVNSVLYNF  241 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~  241 (365)
                      ++..+.+. ||+||++..++......                        .....++|+|+| ++++|+|++++...+. 
T Consensus       341 ~~~~~~~~-YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~-  417 (480)
T 3t5a_A          341 QERVIRPS-YWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPD-  417 (480)
T ss_dssp             CGGGEEEE-EEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCT-
T ss_pred             Chhhcccc-ccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCC-
Confidence            44567888 99999987665322110                        134568999999 9999999875444433 


Q ss_pred             ceeeEE-eecCcccccccCCCcccccccC-----------CCCeeecCceEEEccCCcEEEEee
Q psy13046        242 KWINQV-SSQTMAMKSKRGLPARVKAPDR-----------KKCSQRPRYQFVLREDGYGQVVGR  293 (365)
Q Consensus       242 ~~~gei-~~g~~~~~gY~~~~~~~~~~~~-----------~~g~~~TGD~~~~~~~G~l~i~GR  293 (365)
                      +..||| ++||++|+|||++|+.|+++|.           .+|||+|||+|++| ||+|+|+||
T Consensus       418 g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             TBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             CCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            578998 9999999999999999999885           47899999999997 999999998

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.74  E-value=5.9e-19  Score=173.92  Aligned_cols=143  Identities=12%  Similarity=0.071  Sum_probs=46.0

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cccc--cEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LLLF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI   82 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l   82 (365)
                      ..++.++.|||+++++..|.+|++..      +..+  ||+|||++++|+||+++|.||.||+||++|+||+|.|||++|
T Consensus       367 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l  446 (562)
T 3ite_A          367 EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVI  446 (562)
T ss_dssp             CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------------
T ss_pred             CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHH
Confidence            34677889999999999999999874      2344  999999999999999999999999999999999999999999


Q ss_pred             hcC-CCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC-------------HHHHHHHHHhhhhhcccceEEEeeeEEeee
Q psy13046         83 QTH-PNVLEAYAYGVPDERMGEEVGISIKLKENAKLN-------------ADDIRTFCKGKVKRKISCIFIIIVRISCEC  148 (365)
Q Consensus        83 ~~~-~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~-------------~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~  148 (365)
                      .+| +.+.++++++++++..++...+.++...+....             .+++.++++++++.++.+.     .+.+.+
T Consensus       447 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~-----~i~~v~  521 (562)
T 3ite_A          447 RSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPD-----FIIPIS  521 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCc-----EEEEec
Confidence            998 777888888888877776655555544322211             2367777777776665553     344667


Q ss_pred             ccccc-cCcee
Q psy13046        149 ILLKY-RSAST  158 (365)
Q Consensus       149 ~l~~~-~~gk~  158 (365)
                      .+|++ .+||+
T Consensus       522 ~lP~t~~~GKi  532 (562)
T 3ite_A          522 FIPLRDTSAKT  532 (562)
T ss_dssp             -----------
T ss_pred             cCCCCCCCCcc
Confidence            78976 78888

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.74  E-value=1.4e-17  Score=178.66  Aligned_cols=141  Identities=16%  Similarity=0.113  Sum_probs=123.9

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-------ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE   77 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~   77 (365)
                      ++++.|+.|||+++|+.+++||++..      |       ...||+|||++++++||.++|.||.||+||++|++|+|.|
T Consensus       796 ~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~e  875 (1304)
T 2vsq_A          796 QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEE  875 (1304)
T ss_dssp             CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred             CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHH
Confidence            56678899999999999999999873      2       2359999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046         78 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS  157 (365)
Q Consensus        78 ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk  157 (365)
                      ||.+|.+||.|.+++|++.++...++.++++++...  ..+.+++.+++++.++.++.+..     +.+.+.+|++.+||
T Consensus       876 IE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~-----~~~l~~lP~t~~GK  948 (1304)
T 2vsq_A          876 IEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQT-----FTFLDELPLTTNGK  948 (1304)
T ss_dssp             HHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSE-----EEEESCCCCCSSCS
T ss_pred             HHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccE-----EEEecccCCCCCcc
Confidence            999999999999999999998777888888888654  45678999999999998887743     33567899999999


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus       949 i  949 (1304)
T 2vsq_A          949 V  949 (1304)
T ss_dssp             S
T ss_pred             c
Confidence            8

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.73  E-value=8.3e-18  Score=167.33  Aligned_cols=134  Identities=9%  Similarity=-0.041  Sum_probs=104.8

Q ss_pred             CCCCCCceEEEEecCchhhhhhcc------ccc--------ccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhH
Q psy13046         13 HSSRQKKAIHFRHFDSFLLFVELC------LLL--------FPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEI   78 (365)
Q Consensus        13 ~~~~~~g~~~~~~~~~~~~y~~~~------~~~--------~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~i   78 (365)
                      ++.|+.|||+++|+.++.||++..      |..        +||+|||++++|+||+++|.||.||+||++|++|+|.||
T Consensus       355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eI  434 (620)
T 4dg8_A          355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL  434 (620)
T ss_dssp             CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHH
T ss_pred             CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHH
Confidence            567889999999999999999873      311        799999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         79 EEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        79 e~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      |.+|.+||.|.+++|++.++...++.+++ ++....      .+.+.+.+.++.++.+..     +.+.+.+|++.+||+
T Consensus       435 E~~l~~~p~V~~a~Vv~~~~~~~~~lv~~-~~~~~~------~~~~~l~~~Lp~y~~P~~-----~~~v~~lP~t~~GKi  502 (620)
T 4dg8_A          435 EQRFRRQPGILDCALLVRERNGVKQLLCA-WTGKAD------ASPQALLRQLPTWQRPHA-----CVRVEALPLTAHGKL  502 (620)
T ss_dssp             HHHHHTSTTEEEEEEEEEEETTEEEEEEE-EEECTT------CCCHHHHHHSCGGGSCSE-----EEECSSCCCC----C
T ss_pred             HHHHHhCCCccEEEEEEEeCCCceEEEEE-EecChH------HHHHHHHHhChhhcCCcE-----EEEECcCCCCcccCH
Confidence            99999999999999999988744444433 333221      133456667777777643     335688999999998

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.71  E-value=2.6e-18  Score=170.21  Aligned_cols=143  Identities=17%  Similarity=0.116  Sum_probs=113.7

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------cc-------cc--cEecCceEEEecCCcEEEEeecCcEEEECCEEech
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------LL-------LF--PFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYP   75 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~~-------~~--~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p   75 (365)
                      .+++.++.|||+++|+.++.+|+++.      |.       .+  ||+|||++++| ||+++|.||.||+||++|++|+|
T Consensus       392 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p  470 (590)
T 3kxw_A          392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYP  470 (590)
T ss_dssp             CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHH
T ss_pred             cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCH
Confidence            45677889999999999999999873      32       14  99999999999 99999999999999999999999


Q ss_pred             HhHHHHH-hcCCCcc--eEEEEEeeCCCCCceEEEEEEEcCCC--CCCHHHHHHHHHhhhhhcc-cce-EEEeeeEEeee
Q psy13046         76 KEIEEFI-QTHPNVL--EAYAYGVPDERMGEEVGISIKLKENA--KLNADDIRTFCKGKVKRKI-SCI-FIIIVRISCEC  148 (365)
Q Consensus        76 ~~ie~~l-~~~~~V~--~~~v~~vp~~~~~~~~~~~v~~~~~~--~~~~~~L~~~l~~~l~~~~-~~~-~~~~~~~~~~~  148 (365)
                      .+||.++ ..+|.|.  ++++++++++. ++.+.+++++.++.  ..+.+++.+++++.+.... .+. .+.   ....+
T Consensus       471 ~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~---~v~~~  546 (590)
T 3kxw_A          471 QDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIV---LIPLK  546 (590)
T ss_dssp             HHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEE---EEETT
T ss_pred             HHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEE---EECCC
Confidence            9999999 7899998  79999999875 67777888877653  2345778888888887532 221 111   11235


Q ss_pred             ccccccCcee
Q psy13046        149 ILLKYRSAST  158 (365)
Q Consensus       149 ~l~~~~~gk~  158 (365)
                      .+|++.+||+
T Consensus       547 ~lP~t~sGKi  556 (590)
T 3kxw_A          547 AMPHTTSGKI  556 (590)
T ss_dssp             CSCCCSCHHH
T ss_pred             ccCcCCCcHH
Confidence            7999999998

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.70  E-value=2.9e-17  Score=152.60  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=93.3

Q ss_pred             ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHH---hcCCCcceEEEE-EeeCCCCCceEEEEEEEcC
Q psy13046         38 LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFI---QTHPNVLEAYAY-GVPDERMGEEVGISIKLKE  113 (365)
Q Consensus        38 ~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l---~~~~~V~~~~v~-~vp~~~~~~~~~~~v~~~~  113 (365)
                      ..+||+|||++++|+|| ++|.||.||+||++|+||+|.+||+.|   ..||.|.+++|+ +.|++..++.++++++...
T Consensus       226 ~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~  304 (358)
T 4gs5_A          226 NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAM  304 (358)
T ss_dssp             TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCC
T ss_pred             cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCC
Confidence            57899999999999999 566799999999999999999999877   468999987765 7788888888888776543


Q ss_pred             CCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046        114 NAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus       114 ~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      . ....+++.++++++++.++.+..     +.+.+.+|++.+||+
T Consensus       305 ~-~~~~~~l~~~l~~~L~~~~~P~~-----i~~v~~lP~t~~GKi  343 (358)
T 4gs5_A          305 P-EALTERLTAEIRSRVSTYENPKH-----IYFAKAFAKTQTDKI  343 (358)
T ss_dssp             C-HHHHHHHHHHHHHHSCGGGSCSC-----EEEESSCCBCTTSCB
T ss_pred             C-CcCHHHHHHHHHhhCCCCCCceE-----EEEECCcCCCCCCCh
Confidence            3 23457889999998888776643     345678999999998

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.67  E-value=2.7e-16  Score=150.04  Aligned_cols=136  Identities=17%  Similarity=0.257  Sum_probs=106.6

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecCC------c---EEEEeecCcEEEECCEEechHhHHHH
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLREDG------Y---GQVVGRIKDMIIRGGENIYPKEIEEF   81 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~g------~---~~i~GR~~d~i~~~G~~v~p~~ie~~   81 (365)
                      +++++|+.|||++++...      ..+..+||+|||+++++++|      +   ++|.||.||+|+++|.+|+|.+||++
T Consensus       276 ~~~~~g~~Gel~v~~~~~------~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~  349 (436)
T 3qov_A          276 EPVPEGEIGELVLTTLDR------EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKI  349 (436)
T ss_dssp             SBCSTTCCEEEEEEESSC------CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHH
T ss_pred             CCCCCCCceEEEEeccCc------CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHH
Confidence            566788999999998432      23467899999999999998      5   69999999999999999999999999


Q ss_pred             HhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC----HHHHHHHHHhhhhhcccceEEEeeeEEeee--ccccccC
Q psy13046         82 IQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN----ADDIRTFCKGKVKRKISCIFIIIVRISCEC--ILLKYRS  155 (365)
Q Consensus        82 l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~----~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~--~l~~~~~  155 (365)
                      |.+||.|.++++++++++..++.+.++|+++ +...+    .+++.+.+++.+..++...    ..+.+.+  .+|++. 
T Consensus       350 l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p----~~i~~v~~~~lP~t~-  423 (436)
T 3qov_A          350 LVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVT----PKVKLVKKGSLPQSE-  423 (436)
T ss_dssp             HTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSC----CEEEEECTTCCC----
T ss_pred             HHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCc----eEEEEeCCCcccCcC-
Confidence            9999999999999999877788899999988 54444    5778888888887773321    1333445  789988 


Q ss_pred             cee
Q psy13046        156 AST  158 (365)
Q Consensus       156 gk~  158 (365)
                      ||+
T Consensus       424 GKi  426 (436)
T 3qov_A          424 GKA  426 (436)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            887

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.65  E-value=2.1e-16  Score=151.09  Aligned_cols=139  Identities=13%  Similarity=0.253  Sum_probs=110.3

Q ss_pred             eccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecC-CcE-----EEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         10 ANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRED-GYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~-g~~-----~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      .+++++|+.|||++++...      ..|..+||+|||+++++++ |++     +|.||.||+|+++|.+|+|.+||+++.
T Consensus       282 g~~~~~G~~Gel~v~~~t~------~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~  355 (443)
T 2y4o_A          282 GEVLPDGSQGELVFTSLTK------EAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV  355 (443)
T ss_dssp             CCBCCTTCCEEEEEEESSC------SSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH
T ss_pred             CCCCCCCCceEEEEeCCCc------ccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH
Confidence            3566788999999998432      2346789999999999999 986     899999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcC--C---CCCCHHHHHHHHHhhhhhcccceEEEeeeEEee--eccccccCc
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKE--N---AKLNADDIRTFCKGKVKRKISCIFIIIVRISCE--CILLKYRSA  156 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~--~---~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~g  156 (365)
                      +||.|.++++++++++..++.+.++|++.+  +   ...+.+++.+++++.++.++...    ..+.+.  +.+|++.+|
T Consensus       356 ~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p----~~v~~v~~~~lP~t~~G  431 (443)
T 2y4o_A          356 ALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVS----SGVTVLAAGGIPATATG  431 (443)
T ss_dssp             TSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCC----CEEEEECTTCSCCCTTS
T ss_pred             hCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCc----eEEEEeCCCcccCccCC
Confidence            999999999999987766778888888765  2   12334678888888887654221    112233  579999989


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       432 Ki  433 (443)
T 2y4o_A          432 KA  433 (443)
T ss_dssp             CC
T ss_pred             cc
Confidence            98

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.63  E-value=3.7e-16  Score=149.09  Aligned_cols=138  Identities=15%  Similarity=0.185  Sum_probs=109.7

Q ss_pred             eccCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEec-CCcE-----EEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         10 ANQHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRE-DGYG-----QVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        10 ~~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~-~g~~-----~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      .+++++|+.|||++++...      ..+..+||+|||++++|+ +|++     +|.||.||+|+++|++|+|.+||+++.
T Consensus       280 g~~~~~g~~Gel~v~~~t~------~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~  353 (437)
T 2y27_A          280 GEVLPDGELGELVFTSLTK------EALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL  353 (437)
T ss_dssp             CCBCCTTCCEEEEEEESSC------SSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT
T ss_pred             CCCCCCCCccEEEEecCCc------CCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH
Confidence            3567788999999998432      234678999999999999 6985     899999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCC---CCHHHHHHHHHhhhhhcccceEEEeeeEEee--eccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAK---LNADDIRTFCKGKVKRKISCIFIIIVRISCE--CILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~---~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~--~~l~~~~~gk~  158 (365)
                      +||.|.++++++++++..++.+.++|++.++..   .+.+++.+++++.++.++...    ..+.+.  +.+|++. ||+
T Consensus       354 ~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p----~~v~~v~~~~lP~t~-GKi  428 (437)
T 2y27_A          354 KQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVT----AVINVLPVNGIERSV-GKA  428 (437)
T ss_dssp             TCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCC----EEEEECCTTCSCCCS-SSC
T ss_pred             hCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCc----eEEEEeCCCCccCCC-Ccc
Confidence            999999999999988767788888888876533   234678888888887764321    122233  4789997 888

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.30  E-value=1.2e-11  Score=94.09  Aligned_cols=96  Identities=18%  Similarity=0.243  Sum_probs=71.4

Q ss_pred             eecCcEEEECCEEechHhHHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccc
Q psy13046         60 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISC  136 (365)
Q Consensus        60 GR~~d~i~~~G~~v~p~~ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~  136 (365)
                      .|.||||+++|.|+||.+||.++.+||.|.++++++++++..++.+.++++..++...+.   +++.+.+++.+...+..
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv   80 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV   80 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence            389999999999999999999999999999999999999888888989998887655443   45666677666655443


Q ss_pred             eEEEeeeEEeeeccccccCcee
Q psy13046        137 IFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      ...+  .+.-+..||++ +||+
T Consensus        81 ~~~v--~~v~~~~lPrt-sGKi   99 (109)
T 3lax_A           81 TPRV--KLVPKGALPKS-EGKA   99 (109)
T ss_dssp             CCEE--EEECTTCSCCC----C
T ss_pred             ccce--EEEcCCeecCC-CCCc
Confidence            2211  11223478987 6887

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.29  E-value=9e-12  Score=94.90  Aligned_cols=60  Identities=22%  Similarity=0.349  Sum_probs=54.8

Q ss_pred             eecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEEEEcCCCCCCH
Q psy13046        292 GRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA  351 (365)
Q Consensus       292 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~  351 (365)
                      .|.|||||++|.||+|.|||++|.+||+|.++++++++++..++.+.++|+..++...+.
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~   60 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDY   60 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccccc
Confidence            489999999999999999999999999999999999999999999999999887655443

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=98.45  E-value=2.4e-08  Score=92.70  Aligned_cols=105  Identities=8%  Similarity=-0.008  Sum_probs=54.0

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEe------ecCeeEEEEEcccceeccCCceeeEE-eecC---c
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHI------FEHLFLELVLYIVNSVLYNFKWINQV-SSQT---M  252 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~---~  252 (365)
                      ..+|+..+.+. ||+||++.++....      ..++|+|      +|+++++|+|++++...+ .+..||+ +++.   .
T Consensus       254 ~~~p~~~v~~~-YG~TE~~~~~~~~~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp-~G~~GEl~vt~l~~~~  325 (369)
T 3hgu_A          254 EILPDCEFSAS-YGSTSALGVSRSLL------ITSESQQVIYDSFSPFITYDVVDSITAQTVE-YGERGNVIVTHLSPWA  325 (369)
T ss_dssp             HTCTTSEEEEE-EEEGGGTEEEEECC------BCTTCSSCEEECCTTTEEEEEECTTTCSBCC-TTCEEEEEEEEEETTE
T ss_pred             HhCCCcEEEcc-cCchhhhcceeccc------cccCCCcccccCCCCCeEEEEECCCCCcCCC-CCCceEEEEEEcCccc
Confidence            45678999999 99999986543211      1247888      999999999984443333 3578887 5542   1


Q ss_pred             ccccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCce
Q psy13046        253 AMKSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGE  303 (365)
Q Consensus       253 ~~~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~  303 (365)
                      ++.+|...+..+..... +||+.+|+       ..+..++|.++..++.|.
T Consensus       326 ~l~ry~tgD~~~~~~~~-~g~~~d~~-------~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          326 FYPRVAERDTAIRLPGV-SGFAGDRL-------ADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEEEEEEEEEEECCS-TTCSSCEE-------EEEEECC-----------
T ss_pred             ccccccCCceEEEecCC-CCCcCccc-------ccceeccccCCCceeeec
Confidence            23333333322222211 33332222       135667888888888874

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=98.32  E-value=2.1e-07  Score=89.30  Aligned_cols=50  Identities=12%  Similarity=-0.054  Sum_probs=43.1

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c------------ccccEecCceEEEecCCcEEEEee
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L------------LLFPFLSRDQFVLREDGYGQVVGR   61 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~------------~~~~~~tgDl~~~~~~g~~~i~GR   61 (365)
                      +.++.++.|||+++|+.+|.+|+++.      |            ..+||+|||++++| ||+++|+||
T Consensus       413 ~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          413 IECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             cCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            45678899999999999999999873      3            35699999999997 999999998

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=97.84  E-value=0.00015  Score=70.64  Aligned_cols=43  Identities=9%  Similarity=0.036  Sum_probs=39.6

Q ss_pred             eecCceEEEcc----CCcEEEEeecCceEEeCceEeChHHHHHHHHc
Q psy13046        274 QRPRYQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT  316 (365)
Q Consensus       274 ~~TGD~~~~~~----~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~  316 (365)
                      |++||+.+++.    ...+.|+||.+++|++.|.++++.+||+++.+
T Consensus       412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence            89999999873    46899999999999999999999999999984

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=97.57  E-value=0.00042  Score=67.21  Aligned_cols=44  Identities=7%  Similarity=0.002  Sum_probs=40.3

Q ss_pred             eecCceEEEcc----CCcEEEEeecCceEEeCceEeChHHHHHHHHcC
Q psy13046        274 QRPRYQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH  317 (365)
Q Consensus       274 ~~TGD~~~~~~----~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~  317 (365)
                      |++||+.++..    ..++.|+||.++++++.|+++++.+||+++.+.
T Consensus       400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred             EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence            89999999875    458999999999999999999999999999854

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=97.41  E-value=0.002  Score=62.39  Aligned_cols=71  Identities=8%  Similarity=0.002  Sum_probs=51.8

Q ss_pred             eecCceEEEccC----CcEEEEeecCceEEeCceEeChHHHHHHHHc------CC--CeeEEEEEeecCCCCCcEEEEEE
Q psy13046        274 QRPRYQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT------HP--NVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       274 ~~TGD~~~~~~~----G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~------~~--~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      |++||+.++..-    ..+.|+||.++++++.|.++++.+||+++.+      ..  .|.|-.+.+......+. -+.|+
T Consensus       407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~h-yv~~w  485 (581)
T 4epl_A          407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH-YAIFW  485 (581)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCE-EEEEE
T ss_pred             EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCc-EEEEE
Confidence            899999998642    4799999999999999999999999999975      22  46676666533222233 33445


Q ss_pred             EEcC
Q psy13046        342 KLKE  345 (365)
Q Consensus       342 ~~~~  345 (365)
                      +++.
T Consensus       486 E~~~  489 (581)
T 4epl_A          486 EISG  489 (581)
T ss_dssp             EESS
T ss_pred             eecC
Confidence            6643

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.89  E-value=0.00063  Score=66.02  Aligned_cols=63  Identities=6%  Similarity=-0.002  Sum_probs=49.5

Q ss_pred             CCCCCCceEEEEecCchhhhhhcccccccEecCceEEEec----CCcEEEEeecCcEEEECCEEechHhHHHHHhcC
Q psy13046         13 HSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTH   85 (365)
Q Consensus        13 ~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~----~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~   85 (365)
                      +..|+..++.++...+.-          -|++||+++++.    ...+.|+||.++++++.|+++++.++|+++.+.
T Consensus       381 Ve~G~~YelViTt~~GL~----------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a  447 (581)
T 4eql_A          381 VKLGCTYEPVVTNFAGLY----------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA  447 (581)
T ss_dssp             CCTTCEEEEEEECSSSCC----------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred             cCCCceEEEEEeecccee----------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence            334556666666543322          279999999986    457899999999999999999999999999854

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=96.78  E-value=0.0006  Score=66.32  Aligned_cols=63  Identities=6%  Similarity=0.091  Sum_probs=51.1

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEec----CCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRE----DGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~----~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      .+..|+..++.++...+...          |++||+++++.    ...+.|+||.++++++.|+++++.+||+++.+
T Consensus       392 eVe~G~~YelViTt~~GL~R----------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          392 HVEVGKEYELVITTYAGLYR----------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN  458 (609)
T ss_dssp             GCCTTCEEEEEEECTTSCCS----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             HcCCCCeEEEehhhhhhhhh----------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence            34566677777776544322          79999999884    46889999999999999999999999999983

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=96.41  E-value=0.0014  Score=63.46  Aligned_cols=63  Identities=5%  Similarity=0.022  Sum_probs=49.9

Q ss_pred             cCCCCCCceEEEEecCchhhhhhcccccccEecCceEEEecC----CcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         12 QHSSRQKKAIHFRHFDSFLLFVELCLLLFPFLSRDQFVLRED----GYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        12 ~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~tgDl~~~~~~----g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      .+..|+.+++.++...+..          -|++||+++++.-    ..+.|+||.++++++.|+++++.+|++++.+
T Consensus       387 eve~G~~YelviTt~~GL~----------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~  453 (581)
T 4epl_A          387 QVKIGEEYEVVITNYAGLY----------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVES  453 (581)
T ss_dssp             GCCTTCEEEEEEESTTSCS----------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred             HcCCCCeEEEEEeecccee----------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHH
Confidence            4455666777776654322          2799999998752    4689999999999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-23
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	9e-22
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	6e-22
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-21
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	5e-21
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	8e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	9e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	4e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	9e-20
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-19
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-19
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-18
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	7e-18

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 97.8 bits (242), Expect = 6e-23
 Identities = 33/88 (37%), Positives = 50/88 (56%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + + D  V   +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R 
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRW 440

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGK 129
           G+ V   +  +    L+AD + TFC+  
Sbjct: 441 GQSVTACVVPRLGETLSADALDTFCRSS 468

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 94.3 bits (233), Expect = 9e-22
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query: 284 EDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKL 343
            +G  +++GR+ DMII GGENI+P EIE  + T P V E    G+ D+R G+ V   +  
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP 450

Query: 344 KENAKLNADDIRTFCKGK 361
           +    L+AD + TFC+  
Sbjct: 451 RLGETLSADALDTFCRSS 468

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 94.6 bits (234), Expect = 6e-22
 Identities = 24/89 (26%), Positives = 41/89 (46%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
             S D     ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  
Sbjct: 415 LHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDA 474

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
           GE     + L+    +   +I  +   +V
Sbjct: 475 GELPAAVVVLEHGKTMTEKEIVDYVASQV 503

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 93.8 bits (232), Expect = 1e-21
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
              ED +  +V R+K +I   G  + P E+E  +  HPN+ +A   G+PD+  GE     
Sbjct: 422 YWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAV 481

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           + L+    +   +I  +   +V+  
Sbjct: 482 VVLEHGKTMTEKEIVDYVASQVTTA 506

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 92.0 bits (228), Expect = 5e-21
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + S D     EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    
Sbjct: 492 YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIK 551

Query: 102 GEEVGISIKLKENAKLNAD---DIRTFCKGKV 130
           G+ +   + L    + + +   ++R + + ++
Sbjct: 552 GQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI 583

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 92.0 bits (228), Expect = 7e-21
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
              EDGY  + GR+ D++   G  +   EIE  +  HP + EA   G+P    G+ +   
Sbjct: 499 RRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAY 558

Query: 341 IKLKENAKLNAD---DIRTFCKGKVSKF 365
           + L    + + +   ++R + + ++   
Sbjct: 559 VTLNHGEEPSPELYAEVRNWVRKEIGPL 586

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 91.1 bits (225), Expect = 8e-21
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 275 RPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG 334
           +   Q     DG  + +GRI + +   G  +  +E+E  +  H  + E       D +  
Sbjct: 394 KTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQ 453

Query: 335 EEVGISIKLKENAKLNADDIRTFCKGKVSKF 365
             +      +++  +  + +R F   ++  +
Sbjct: 454 PYLCAYFVSEKH--IPLEQLRQFSSEELPTY 482

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 88.0 bits (217), Expect = 9e-20
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + + DQ     DG  + +GRI + +   G  +  +E+E  +  H  + E       D + 
Sbjct: 393 YKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 452

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
              +      +++  +  + +R F   ++
Sbjct: 453 QPYLCAYFVSEKH--IPLEQLRQFSSEEL 479

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 89.3 bits (220), Expect = 4e-20
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 274 QRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 333
            R      L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468

Query: 334 GEEVGISIKLKENAKLNADDIRTFCKGKV 362
           GE   + I  ++ A   A +++ F + + 
Sbjct: 469 GERSCVFIIPRDEA-PKAAELKAFLRERG 496

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 88.1 bits (217), Expect = 9e-20
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 46  DQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEV 105
           D   L  DGY  V GR KD I RGGE +  +E+E  +  HP V +A    +PD+ +GE  
Sbjct: 413 DIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERS 472

Query: 106 GISIKLKENAKLNADDIRTFCKGKV 130
            + I  ++ A   A +++ F + + 
Sbjct: 473 CVFIIPRDEA-PKAAELKAFLRERG 496

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 88.0 bits (217), Expect = 1e-19
 Identities = 23/89 (25%), Positives = 37/89 (41%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           F + D  V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  + 
Sbjct: 407 FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKW 466

Query: 102 GEEVGISIKLKENAKLNADDIRTFCKGKV 130
            E     +  +       +      K   
Sbjct: 467 QERPLAVVVPRGEKPTPEELNEHLLKAGF 495

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 87.6 bits (216), Expect = 1e-19
 Identities = 22/85 (25%), Positives = 37/85 (43%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
           V  E+GY ++  R+KD+I  GGE I   ++E  +  HP V EA    +P  +  E     
Sbjct: 414 VWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAV 473

Query: 341 IKLKENAKLNADDIRTFCKGKVSKF 365
           +  +       +      K   +K+
Sbjct: 474 VVPRGEKPTPEELNEHLLKAGFAKW 498

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.5 bits (208), Expect = 2e-18
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 42  FLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERM 101
           + + D     +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  
Sbjct: 482 YFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLT 541

Query: 102 GEEVGISIKLKENAKLNA------DDIRTFCKGKVKRKIS 135
           G+ V   + LK  +  +        DI+      V++ I 
Sbjct: 542 GQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIG 581

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.6 bits (203), Expect = 7e-18
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 281 VLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS 340
              +DGY  ++GR+ D++   G  +   EIE  I   P V E    G  D+  G+ V   
Sbjct: 489 AKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAF 548

Query: 341 IKLKENAKLNA----------DDIRTFCKGKVSKF 365
           + LK  +  +             +    +  +  F
Sbjct: 549 VVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF 583

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.98
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.97
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.97
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.96
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.94
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.92
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.83
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.82
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.82
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.78
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.78
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.77
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.76

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2e-33  Score=273.20  Aligned_cols=182  Identities=17%  Similarity=0.163  Sum_probs=153.1

Q ss_pred             hhccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccC
Q psy13046        181 IHTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRG  259 (365)
Q Consensus       181 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~  259 (365)
                      ....++...+.+. ||+||++..++..... ....+++|+|+|+++++|+|++.+...+. +..||+ ++|++++.||++
T Consensus       324 ~~~~~~~~~~~~~-YG~TE~~~~~~~~~~~-~~~~~svG~p~~~~~~~i~d~d~~~~~~~-g~~Gel~v~g~~~~~gY~~  400 (541)
T d1lcia_         324 VAKRFHLPGIRQG-YGLTETTSAILITPEG-DDKPGAVGKVVPFFEAKVVDLDTGKTLGV-NQRGELCVRGPMIMSGYVN  400 (541)
T ss_dssp             HHHHTTCSCCBCE-ECCGGGSSCSEECCCC----CCCCBEECTTCEEEEECTTTCCBCCT-TCCEEEEEESTTSCSEETT
T ss_pred             cccccCCceeeec-CCccccCceEEecCcc-cCCCCccccccCCCEEEEEECCCCcCCCC-CCeEEEEEccCccCCeeCC
Confidence            3345566667777 9999998877654333 35677899999999999999876554443 567998 999999999999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +++.+...+..++||+|||+|++|++|+++++||.||+||++|++|+|.+||++|.+||+|.+|+|++++++..|+.++|
T Consensus       401 ~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a  480 (541)
T d1lcia_         401 NPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA  480 (541)
T ss_dssp             BHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred             ChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEE
Confidence            99988888888999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        340 SIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +|+++++...+.++|+++|+++|++|
T Consensus       481 ~v~~~~~~~~~~~~l~~~~~~~l~~~  506 (541)
T d1lcia_         481 VVVLEHGKTMTEKEIVDYVASQVTTA  506 (541)
T ss_dssp             EEEECTTCCCCHHHHHHHHHHHSCGG
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCcc
Confidence            99999888889999999999988754

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.98  E-value=1.1e-32  Score=273.49  Aligned_cols=176  Identities=15%  Similarity=0.124  Sum_probs=152.0

Q ss_pred             CCccccccCCccccccccccccc-ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--CcccccccCCCc
Q psy13046        187 GQSYFPCCCGKLRIHPFLEVVQS-FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKRGLPA  262 (365)
Q Consensus       187 ~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~~  262 (365)
                      +..+.+. ||+||++..+..... ......+++|+|+||++++|+|+++++++.  +..||+ ++|  |+++.|||++++
T Consensus       402 ~~~i~~~-yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~--g~~Gel~v~~~~p~~~~~~~~~~~  478 (643)
T d1pg4a_         402 KCPVVDT-WWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEG--ATEGNLVITDSWPGQARTLFGDHE  478 (643)
T ss_dssp             CSCEEEE-BCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCS--SEEEEEEECSCCTTCCCEETTCHH
T ss_pred             CceEEEe-echhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCC--CceEEEEEecCCCcccccccCChh
Confidence            4557788 999999876654322 223567889999999999999998877654  477888 888  679999999998


Q ss_pred             cccccc--CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        263 RVKAPD--RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       263 ~~~~~~--~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      .+.+.+  ..+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++.+++..|+.++||
T Consensus       479 ~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~  558 (643)
T d1pg4a_         479 RFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAY  558 (643)
T ss_dssp             HHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred             hchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEE
Confidence            776654  348999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCH---HHHHHHHHcccCCC
Q psy13046        341 IKLKENAKLNA---DDIRTFCKGKVSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~---~~l~~~~~~~l~~y  365 (365)
                      |+++++...+.   .+|+++|+++|++|
T Consensus       559 Vv~~~~~~~~~~~~~~i~~~~~~~L~~~  586 (643)
T d1pg4a_         559 VTLNHGEEPSPELYAEVRNWVRKEIGPL  586 (643)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             EEECCCCCCCHHHHHHHHHHHHhhCCcc
Confidence            99998877665   48999999999875

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.7e-33  Score=269.90  Aligned_cols=179  Identities=17%  Similarity=0.102  Sum_probs=133.7

Q ss_pred             CCCccccccCCccccccccccccccc----------ccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCccc
Q psy13046        186 PGQSYFPCCCGKLRIHPFLEVVQSFE----------CRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAM  254 (365)
Q Consensus       186 ~~~~~~~~~yG~tE~~~~~~~~~~~~----------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~  254 (365)
                      .+..+.+. ||+||+++.+.......          ....+++|+|+||++++|+|+++++++.+.+..||| ++|++++
T Consensus       309 ~~~~i~~~-yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~  387 (534)
T d1v25a_         309 MGVEVRQG-YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWIT  387 (534)
T ss_dssp             TTCEEEEE-EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSB
T ss_pred             hCCeeeee-ccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCccc
Confidence            36677888 99999988776322111          023468999999999999999999998887889998 9999999


Q ss_pred             ccccCCCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046        255 KSKRGLPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       255 ~gY~~~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      .|||++++.|.+.|..+|||+|||+|++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+|+|++++++..+
T Consensus       388 ~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~  467 (534)
T d1v25a_         388 GGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQ  467 (534)
T ss_dssp             SSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSS
T ss_pred             ceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCC
Confidence            99999999999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        335 EEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       335 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +.++|+|+++.+....++.++..++++|++|
T Consensus       468 ~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~  498 (534)
T d1v25a_         468 ERPLAVVVPRGEKPTPEELNEHLLKAGFAKW  498 (534)
T ss_dssp             EEEEECC-------------------CCCTT
T ss_pred             eEEEEEEEeCCCCCCHHHHHHHHHHhcCCcC
Confidence            9999999987654444444445578888876

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4e-32  Score=269.74  Aligned_cols=176  Identities=14%  Similarity=0.067  Sum_probs=148.2

Q ss_pred             ccccccCCccccccccccccc--ccccccceeeEeecCeeEEEEEcccceeccCCceeeEE-eec--CcccccccCCCcc
Q psy13046        189 SYFPCCCGKLRIHPFLEVVQS--FECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQ--TMAMKSKRGLPAR  263 (365)
Q Consensus       189 ~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g--~~~~~gY~~~~~~  263 (365)
                      .+.+. ||+||++..+.....  ......+++|+|+|+++++|+|++++....+.+..||+ +++  |+++.|||++++.
T Consensus       391 ~i~~~-yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~  469 (640)
T d1ry2a_         391 PIVDT-YWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDR  469 (640)
T ss_dssp             CEEEC-BCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHH
T ss_pred             eEEee-ecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHH
Confidence            35666 999999876553322  22256688999999999999999888887776777887 666  7999999999999


Q ss_pred             cccccC--CCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEEE
Q psy13046        264 VKAPDR--KKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGISI  341 (365)
Q Consensus       264 ~~~~~~--~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v  341 (365)
                      |.+.|.  .+|||+|||+|++|+||+|+|+||+||+||++|++|+|.|||++|.+||.|.+|+|++++++..|+.++|||
T Consensus       470 t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~V  549 (640)
T d1ry2a_         470 YLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFV  549 (640)
T ss_dssp             HHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEE
T ss_pred             HHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEE
Confidence            988773  369999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCC----------HHHHHHHHHcccCCC
Q psy13046        342 KLKENAKLN----------ADDIRTFCKGKVSKF  365 (365)
Q Consensus       342 ~~~~~~~~~----------~~~l~~~~~~~l~~y  365 (365)
                      +++++...+          .++|+++++++|++|
T Consensus       550 v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~  583 (640)
T d1ry2a_         550 VLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPF  583 (640)
T ss_dssp             EEC------------CCSHHHHHHHHHHHHTCTT
T ss_pred             EEcCCCCccccchHHHHHHHHHHHHHHHhhCCCC
Confidence            998754322          256888999999876

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.96  E-value=1.7e-29  Score=243.95  Aligned_cols=177  Identities=10%  Similarity=0.029  Sum_probs=152.8

Q ss_pred             cCCCCccccccCCcccccccccccccccc--cccceeeEeecCeeEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        184 VWPGQSYFPCCCGKLRIHPFLEVVQSFEC--RRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       184 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~--~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      .+.+..+... ||+||++.+++.......  ....+.|.+.++..+.++|++++.++.+  ..||+ ++||+++.|||++
T Consensus       297 ~~~~~~~~~~-yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g--~~GEl~v~~~~~~~gY~~~  373 (514)
T d1amua_         297 WKEKVTYINA-YGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVG--EAGELCIGGEGLARGYWKR  373 (514)
T ss_dssp             HTTTSEEEEE-ECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTT--CEEEEEEEETTCCCEETTC
T ss_pred             hccceeEEEe-eccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCC--CeeEEEEccCccccccccc
Confidence            3446677788 999999887763332222  3456789999999999999777766654  78998 9999999999999


Q ss_pred             Cccccccc------CCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCC
Q psy13046        261 PARVKAPD------RKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMG  334 (365)
Q Consensus       261 ~~~~~~~~------~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g  334 (365)
                      ++.+.+.|      +.+|||+|||+|++|+||+|+|+||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..|
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g  453 (514)
T d1amua_         374 PELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQ  453 (514)
T ss_dssp             HHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSC
T ss_pred             ccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCC
Confidence            99877766      347899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEEcCCCCCCHHHHHHHHHcccCCC
Q psy13046        335 EEVGISIKLKENAKLNADDIRTFCKGKVSKF  365 (365)
Q Consensus       335 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~y  365 (365)
                      +.++|+|+++++  .+.++|+++++++|++|
T Consensus       454 ~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~  482 (514)
T d1amua_         454 PYLCAYFVSEKH--IPLEQLRQFSSEELPTY  482 (514)
T ss_dssp             EEEEEEEEESSC--CCHHHHHHHHHHHSCGG
T ss_pred             EEEEEEEEcCCC--CCHHHHHHHHHhhCCcc
Confidence            999999998764  57899999999999875

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=4e-27  Score=227.89  Aligned_cols=179  Identities=18%  Similarity=0.166  Sum_probs=146.5

Q ss_pred             ccCCCCccccccCCcccccccccccccccccccceeeEeecCe-eEEEEEcccceeccCCceeeEE-eecCcccccccCC
Q psy13046        183 TVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHL-FLELVLYIVNSVLYNFKWINQV-SSQTMAMKSKRGL  260 (365)
Q Consensus       183 ~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~~~~~gei-~~g~~~~~gY~~~  260 (365)
                      ....+...... |+.+|.+..+...........+++|.|+++. ...+.+++++++..  +..||+ ++|+.++.||+++
T Consensus       319 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~--~~~Gel~v~g~~~~~gY~~~  395 (536)
T d1mdba_         319 KAVFGCTLQQV-FGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKP--GETGHLLTRGPYTIRGYYKA  395 (536)
T ss_dssp             HHHTCSEEEEE-EECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCT--TCCEEEEEECTTSCSSCTTC
T ss_pred             hhccCceeeec-cccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeecc--cccceeecCCCccccccccc
Confidence            34445556666 7777765544433333335667889998755 45555544444433  578898 9999999999999


Q ss_pred             CcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEEE
Q psy13046        261 PARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGIS  340 (365)
Q Consensus       261 ~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~  340 (365)
                      ++.+...+..+|||+|||++++|+||+|+|+||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++|+
T Consensus       396 ~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~  475 (536)
T d1mdba_         396 EEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF  475 (536)
T ss_dssp             HHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred             cccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEE
Confidence            99998888889999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHcc-cCCC
Q psy13046        341 IKLKENAKLNADDIRTFCKGK-VSKF  365 (365)
Q Consensus       341 v~~~~~~~~~~~~l~~~~~~~-l~~y  365 (365)
                      |+++++ ..+.++|+++++++ |++|
T Consensus       476 v~~~~~-~~~~~~l~~~l~~~~l~~~  500 (536)
T d1mdba_         476 IIPRDE-APKAAELKAFLRERGLAAY  500 (536)
T ss_dssp             EEESSS-CCCHHHHHHHHHHTTCCGG
T ss_pred             EEECCC-CCCHHHHHHHHHhcCCCcC
Confidence            998765 46788999999976 8765

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.92  E-value=1.1e-25  Score=215.27  Aligned_cols=179  Identities=23%  Similarity=0.256  Sum_probs=139.0

Q ss_pred             hccCCCCccccccCCcccccccccccccccccccceeeEeecCeeEEEEEcccceeccCCceeeEE--eecCcccccccC
Q psy13046        182 HTVWPGQSYFPCCCGKLRIHPFLEVVQSFECRRYQVVLHIFEHLFLELVLYIVNSVLYNFKWINQV--SSQTMAMKSKRG  259 (365)
Q Consensus       182 ~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~gei--~~g~~~~~gY~~  259 (365)
                      +....+..+... ||+||++..+....... ....+.+.+.+.....+.+..+..+..  +..|++  ..++..+.+|++
T Consensus       292 ~~~~~~~~~~~~-yg~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~~~~~~~~~~~~~~~~  367 (503)
T d3cw9a1         292 VHQHLPGEKVNI-YGTTEAMNSLYMRQPKT-GTEMAPGFFSEVRIVRIGGGVDEIVAN--GEEGELIVAASDSAFVGYLN  367 (503)
T ss_dssp             HHHHCCSEEEEE-EEETTTEEEEEEESCSS-SSEEBCCTTCCEEEECTTSCTTCBCCT--TCCEEEEEECCTTSCCCBTT
T ss_pred             cccccccccccc-ccccccceeeeeccccc-cccccccccccceeeeeecccCcccCC--CccccccccccccccccccC
Confidence            344556667777 99999977655332221 222233333333333333333333333  344443  667888889999


Q ss_pred             CCcccccccCCCCeeecCceEEEccCCcEEEEeecCceEEeCceEeChHHHHHHHHcCCCeeEEEEEeecCCCCCcEEEE
Q psy13046        260 LPARVKAPDRKKCSQRPRYQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNVLEAYAYGVPDERMGEEVGI  339 (365)
Q Consensus       260 ~~~~~~~~~~~~g~~~TGD~~~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a  339 (365)
                      +++.|.+.|. +|||+|||+|++|+||+|+++||+||+||++|++|+|.+||++|.+||+|.+|+|++.+++..|+.++|
T Consensus       368 ~~~~t~~~~~-~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a  446 (503)
T d3cw9a1         368 QPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTA  446 (503)
T ss_dssp             CHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred             ChhhhHHHhc-CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEE
Confidence            9999988886 899999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEEcCCCCCCHHHHHHHHH-cccCCC
Q psy13046        340 SIKLKENAKLNADDIRTFCK-GKVSKF  365 (365)
Q Consensus       340 ~v~~~~~~~~~~~~l~~~~~-~~l~~y  365 (365)
                      +|+++++...+.++++++++ ++|++|
T Consensus       447 ~v~~~~~~~~~~~~l~~~~~~~~l~~~  473 (503)
T d3cw9a1         447 CVVPRLGETLSADALDTFCRSSELADF  473 (503)
T ss_dssp             EEEECTTCCCCHHHHHHHHHHSSSCGG
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence            99999888889999999995 678865

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.83  E-value=2.2e-20  Score=180.38  Aligned_cols=143  Identities=20%  Similarity=0.164  Sum_probs=115.8

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc-------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC-------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~-------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      ++++.++.|||+++++..+.+|++..       ...+||+|||++++|++|++++.||.||+|+++|++|+|.+||++|.
T Consensus       377 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~  456 (541)
T d1lcia_         377 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL  456 (541)
T ss_dssp             CBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHH
T ss_pred             cCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHH
Confidence            45677889999999999999999762       35789999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhccc-ceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKIS-CIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.++++|+++++...+.+++.+++++.+..... +..     +.+.+.+|++.+||+
T Consensus       457 ~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~-----i~~v~~lP~t~~GKi  527 (541)
T d1lcia_         457 QHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGG-----VVFVDEVPKGLTGKL  527 (541)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTE-----EEEESSCCC-----C
T ss_pred             hCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcE-----EEEeCCCCcCCCcCc
Confidence            9999999999999998888999999999888788889999999998866532 322     234467899988887

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.82  E-value=2.6e-20  Score=183.85  Aligned_cols=143  Identities=18%  Similarity=0.257  Sum_probs=121.8

Q ss_pred             ccCCCCCCceEEEEec--Cchhhhhhcc-------c--ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHH
Q psy13046         11 NQHSSRQKKAIHFRHF--DSFLLFVELC-------L--LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIE   79 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~--~~~~~y~~~~-------~--~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie   79 (365)
                      ++++.++.|||+++++  ..+.+|++.+       +  ..+||+|||++++|+||+++|.||+||+||++|++|+|.|||
T Consensus       450 ~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE  529 (643)
T d1pg4a_         450 HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE  529 (643)
T ss_dssp             CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHH
T ss_pred             CCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHH
Confidence            5566778899999985  5666777552       2  378999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCH---HHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCc
Q psy13046         80 EFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNA---DDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSA  156 (365)
Q Consensus        80 ~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~---~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g  156 (365)
                      ++|.+||.|.+++|++++++..++.++++|+++++...+.   .++.+++++++..+..+.     .+.+.+.+|++.+|
T Consensus       530 ~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~-----~i~~v~~lP~T~sG  604 (643)
T d1pg4a_         530 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPD-----VLHWTDSLPKTRSG  604 (643)
T ss_dssp             HHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCS-----EEEECSCCCBCTTS
T ss_pred             HHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCcc-----EEEEECCCCCCCCc
Confidence            9999999999999999999988999999999998766664   367777777777666553     44577889999999


Q ss_pred             ee
Q psy13046        157 ST  158 (365)
Q Consensus       157 k~  158 (365)
                      |+
T Consensus       605 Ki  606 (643)
T d1pg4a_         605 KI  606 (643)
T ss_dssp             CB
T ss_pred             Cc
Confidence            98

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.82  E-value=3.8e-20  Score=177.72  Aligned_cols=141  Identities=11%  Similarity=0.049  Sum_probs=124.3

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc------c-------ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC------L-------LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKE   77 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~------~-------~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~   77 (365)
                      +.++.++.|||+++++..+.+|++..      |       ..+||+|||++++|+||+++|.||.||+|+++|++|+|.+
T Consensus       349 ~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~  428 (514)
T d1amua_         349 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE  428 (514)
T ss_dssp             CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred             eecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHH
Confidence            35677889999999999999999763      1       2679999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhhhhhcccceEEEeeeEEeeeccccccCce
Q psy13046         78 IEEFIQTHPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYRSAS  157 (365)
Q Consensus        78 ie~~l~~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk  157 (365)
                      ||++|.+||.|.+++|++.+++..++.++++++.+++  .+.+++.++++++++.+..+..     +.+.+.+|++.+||
T Consensus       429 IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~-----i~~v~~lP~t~~GK  501 (514)
T d1amua_         429 VESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSY-----FIQLDKMPLTSNGK  501 (514)
T ss_dssp             HHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSE-----EEECSSCCBCTTSS
T ss_pred             HHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC--CCHHHHHHHHHhhCCcccCceE-----EEEeCCCCCCCCcC
Confidence            9999999999999999999998889999999888765  5678999999998887766643     44567899999999


Q ss_pred             e
Q psy13046        158 T  158 (365)
Q Consensus       158 ~  158 (365)
                      +
T Consensus       502 i  502 (514)
T d1amua_         502 I  502 (514)
T ss_dssp             B
T ss_pred             h
Confidence            8

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.4e-19  Score=178.82  Aligned_cols=138  Identities=20%  Similarity=0.184  Sum_probs=113.4

Q ss_pred             CCCceEEEEe--cCchhhhhhcc-------c--ccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhc
Q psy13046         16 RQKKAIHFRH--FDSFLLFVELC-------L--LLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQT   84 (365)
Q Consensus        16 ~~~g~~~~~~--~~~~~~y~~~~-------~--~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~   84 (365)
                      +..|++.+++  +..+.+|+++.       +  ..+||+|||++++|+||+++|+||.||+||++|++|+|.+||++|.+
T Consensus       445 ~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~  524 (640)
T d1ry2a_         445 HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE  524 (640)
T ss_dssp             SCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHS
T ss_pred             CceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHh
Confidence            3469999988  47889998762       2  35899999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCC----------HHHHHHHHHhhhhhcccceEEEeeeEEeeecccccc
Q psy13046         85 HPNVLEAYAYGVPDERMGEEVGISIKLKENAKLN----------ADDIRTFCKGKVKRKISCIFIIIVRISCECILLKYR  154 (365)
Q Consensus        85 ~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~----------~~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~  154 (365)
                      ||.|.+++|+|++++..++.++++|+++++....          .+++.+++++++..+..+.     .+.+.+.+|++.
T Consensus       525 ~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~-----~i~~v~~lP~T~  599 (640)
T d1ry2a_         525 DPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPK-----LIILVDDLPKTR  599 (640)
T ss_dssp             STTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCS-----EEEECSCCCBCT
T ss_pred             CCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCce-----EEEEeCCCCCCC
Confidence            9999999999999998999999999988753322          2456677777777666664     344667899999


Q ss_pred             Ccee
Q psy13046        155 SAST  158 (365)
Q Consensus       155 ~gk~  158 (365)
                      +||+
T Consensus       600 sGKi  603 (640)
T d1ry2a_         600 SGKI  603 (640)
T ss_dssp             TSCB
T ss_pred             CcCc
Confidence            9999

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=9.3e-19  Score=168.49  Aligned_cols=142  Identities=21%  Similarity=0.245  Sum_probs=122.6

Q ss_pred             ccCCCCCCceEEEEecCchhhhhhcc-------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHFDSFLLFVELC-------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~~~~~~y~~~~-------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.++.||++++++..+.+|++..       ...+||+|||++++|+||+++|.||.||+|+++|++|+|.+||+++.
T Consensus       371 ~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~  450 (536)
T d1mdba_         371 RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL  450 (536)
T ss_dssp             CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT
T ss_pred             CeecccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHH
Confidence            45677889999999999999999862       36799999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHHhh-hhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCKGK-VKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~~~-l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|++++|++.+++..++.++++|+++++ ..+.+++.++++++ ++.+..+.     .+.+.+.+|++.+||+
T Consensus       451 ~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~-----~i~~v~~lP~t~~GKi  520 (536)
T d1mdba_         451 AHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPD-----RVEFVESFPQTGVGKV  520 (536)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCS-----EEEECSSCCBCTTSCB
T ss_pred             hCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHHHHHHHhcCCCcCcCcc-----EEEEECCCCcCCCcCc
Confidence            9999999999999998888888888887764 35678899998875 66665543     3345677999988987

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.6e-19  Score=174.22  Aligned_cols=137  Identities=17%  Similarity=0.129  Sum_probs=83.8

Q ss_pred             CCCceEEEEecCchhhhhhcc-------cccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHhcCCCc
Q psy13046         16 RQKKAIHFRHFDSFLLFVELC-------LLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQTHPNV   88 (365)
Q Consensus        16 ~~~g~~~~~~~~~~~~y~~~~-------~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~~~~~V   88 (365)
                      ++.|||+++++.++.+|+++.       ..++||+|||++++|+||++++.||.||+|+++|++|+|.+||++|.+||.|
T Consensus       374 ~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V  453 (534)
T d1v25a_         374 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKV  453 (534)
T ss_dssp             CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-------
T ss_pred             CeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCc
Confidence            568999999999999999762       3688999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHH-HHhhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         89 LEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTF-CKGKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        89 ~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~-l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      .+++|++++++..++.++++|+++.+... .+++.+. +++.++.+..+.     .+.+.+.+|++.+||+
T Consensus       454 ~~a~v~~~~~~~~~~~l~a~vv~~~~~~~-~~~~~~~~~~~~l~~~~~P~-----~i~~~~~lP~t~~GKi  518 (534)
T d1v25a_         454 KEAAVVAIPHPKWQERPLAVVVPRGEKPT-PEELNEHLLKAGFAKWQLPD-----AYVFAEEIPRTSAGKF  518 (534)
T ss_dssp             ---CEEEEECSSSSEEEEECC--------------------CCCTTTSCS-----BC--------------
T ss_pred             ceEEEEEEECCCCCeEEEEEEEeCCCCCC-HHHHHHHHHHhcCCcCCCcc-----EEEEECCCCCCCCccc
Confidence            99999999998889999888887654332 2344443 555565554442     2335567899988888

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.76  E-value=2.7e-18  Score=163.34  Aligned_cols=143  Identities=26%  Similarity=0.336  Sum_probs=119.2

Q ss_pred             ccCCCCCCceEEEEec-Cchhhhhhc------ccccccEecCceEEEecCCcEEEEeecCcEEEECCEEechHhHHHHHh
Q psy13046         11 NQHSSRQKKAIHFRHF-DSFLLFVEL------CLLLFPFLSRDQFVLREDGYGQVVGRIKDMIIRGGENIYPKEIEEFIQ   83 (365)
Q Consensus        11 ~~~~~~~~g~~~~~~~-~~~~~y~~~------~~~~~~~~tgDl~~~~~~g~~~i~GR~~d~i~~~G~~v~p~~ie~~l~   83 (365)
                      +.++.|+.|++.+.+. ..+.+|+..      .|..+||+|||++++|+||+++++||+||+||++|++|+|.+||+++.
T Consensus       343 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~  422 (503)
T d3cw9a1         343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG  422 (503)
T ss_dssp             CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHT
T ss_pred             cccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHH
Confidence            4556777888887665 444444444      256899999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEEeeCCCCCceEEEEEEEcCCCCCCHHHHHHHHH-hhhhhcccceEEEeeeEEeeeccccccCcee
Q psy13046         84 THPNVLEAYAYGVPDERMGEEVGISIKLKENAKLNADDIRTFCK-GKVKRKISCIFIIIVRISCECILLKYRSAST  158 (365)
Q Consensus        84 ~~~~V~~~~v~~vp~~~~~~~~~~~v~~~~~~~~~~~~L~~~l~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~gk~  158 (365)
                      +||.|.+++|++++++..++.++++|+++++...+.+++.++++ +.++.+..+..     +.+.+.+|++.+||+
T Consensus       423 ~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~-----i~~v~~~P~t~~GKi  493 (503)
T d3cw9a1         423 TAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKR-----YFILDQLPKNALNKV  493 (503)
T ss_dssp             TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSE-----EEECSCCCBCTTSCB
T ss_pred             hCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCCccE-----EEEECCCCcCCCcCc
Confidence            99999999999999988888999999998887788899999885 45777666533     335577999999998