Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 68
cd01158 373
cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog
4e-26 pfam02771 113
pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,
2e-25 cd01156 376
cd01156, IVD, Isovaleryl-CoA dehydrogenase
1e-20 COG1960 393
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta
2e-12 cd01162 375
cd01162, IBD, Isobutyryl-CoA dehydrogenase
5e-11 PLN02519 404
PLN02519, PLN02519, isovaleryl-CoA dehydrogenase
1e-10 cd01157 378
cd01157, MCAD, Medium chain acyl-CoA dehydrogenase
2e-10 cd01160 372
cd01160, LCAD, Long chain acyl-CoA dehydrogenase
5e-10 PTZ00461 410
PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;
6e-09 cd01151 386
cd01151, GCD, Glutaryl-CoA dehydrogenase
1e-08 cd01161 409
cd01161, VLCAD, Very long chain acyl-CoA dehydroge
8e-07 PLN02526 412
PLN02526, PLN02526, acyl-coenzyme A oxidase
3e-06 TIGR03207 372
TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co
8e-06 TIGR04022 391
TIGR04022, sulfur_SfnB, sulfur acquisition oxidore
6e-05 cd01163 377
cd01163, DszC, Dibenzothiophene (DBT) desulfurizat
0.004
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
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Score = 97.0 bits (242), Expect = 4e-26
Identities = 36/67 (53%), Positives = 54/67 (80%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
M++KT RDFA++E+ P+AA++D++ FP + IK++ LGLMG+ + EEYGGAGLD LA
Sbjct: 5 MIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYA 64
Query: 61 VAMEEIA 67
+A+EE+A
Sbjct: 65 IAIEELA 71
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain
Back Show alignment and domain information
Score = 89.8 bits (224), Expect = 2e-25
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
L+ T R+FA++E+ P AA+ D+E FP + +KLG LGL+G+ + EEYGGAGLD L
Sbjct: 6 ALRDTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGLTIPEEYGGAGLDYLEYA 65
Query: 61 VAMEEIA 67
+ EE+A
Sbjct: 66 LVAEELA 72
The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 82.1 bits (203), Expect = 1e-20
Identities = 33/67 (49%), Positives = 52/67 (77%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
ML+++ R+FAQ+E+ P+AAK+D+++ FP D +K+G LGL+G+ EEYGG+G+ LA
Sbjct: 8 MLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHV 67
Query: 61 VAMEEIA 67
+ MEEI+
Sbjct: 68 IIMEEIS 74
Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
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Score = 59.8 bits (145), Expect = 2e-12
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHL---FPADQIKKLGALGLMGVLVDEEYGGAGLDTL 57
L+ R+FA++EL P AA++D+ FP + ++ L GL+G+ + EEYGG GL L
Sbjct: 11 ALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPL 70
Query: 58 ALHVAMEEIAQ 68
+EE+A+
Sbjct: 71 EQAAVLEELAR 81
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase
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Score = 55.5 bits (134), Expect = 5e-11
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHV 61
+Q+ R FA +E+ P AA D++ FP D ++K LG G+ + ++ GG+GL L +
Sbjct: 8 IQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASI 67
Query: 62 AMEEIA 67
E ++
Sbjct: 68 IFEALS 73
Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Score = 54.1 bits (130), Expect = 1e-10
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 3 QKTCRDFAQQELKPIAAKLDKEHLFPADQ--IKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+++ + FAQ+ + P AA +D + FP D K +G L G+ EEYGG GL L
Sbjct: 34 KESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHC 93
Query: 61 VAMEEIAQ 68
+AMEEI++
Sbjct: 94 IAMEEISR 101
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 54.1 bits (130), Expect = 2e-10
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHV 61
Q+T R FA++E+ P+AA+ DK +P IK+ LGLM + E+ GG GL T +
Sbjct: 8 FQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCL 67
Query: 62 AMEEIA 67
EE+A
Sbjct: 68 ITEELA 73
MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase
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Score = 52.5 bits (126), Expect = 5e-10
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+ R F +E+ P + +K P + +K G GL+GV EEYGG G D L+
Sbjct: 5 AFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAA 64
Query: 61 VAMEEIAQ 68
V EE+A+
Sbjct: 65 VLWEELAR 72
LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional
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Score = 49.6 bits (118), Expect = 6e-09
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
L++T F+++ + A + D F D K+LG LG+MGV V E GGAG+D +A
Sbjct: 43 ALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAV 102
Query: 61 VAMEEIAQ 68
+ E+++
Sbjct: 103 IIHHELSK 110
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase
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Score = 48.5 bits (116), Expect = 1e-08
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
++ T R+F Q+EL P + +E F I+++G LGL+G + + YG AGL ++A
Sbjct: 19 AIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATI-KGYGCAGLSSVAYG 77
Query: 61 VAMEEIA 67
+ E+
Sbjct: 78 LIAREVE 84
Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 43.6 bits (103), Expect = 8e-07
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLD 55
ML F ++ P AK D+ P + +L LGL G+ V EEYGG GL+
Sbjct: 33 MLVGPVEKFFEEVNDP--AKNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLN 85
VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase
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Score = 41.8 bits (98), Expect = 3e-06
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHV 61
L+K R+ ++E+ PI + ++ FP I KLG+LG+ G + + YG GL A +
Sbjct: 36 LRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-KGYGCPGLSITASAI 94
Query: 62 AMEEIAQ 68
A E+A+
Sbjct: 95 ATAEVAR 101
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase
Back Show alignment and domain information
Score = 40.7 bits (95), Expect = 8e-06
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHV 61
L T R FA++ + P + DK + + ++ +G +G +G + EE+GG G+ LA V
Sbjct: 8 LADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGV 67
Query: 62 AMEEIA 67
E+IA
Sbjct: 68 IHEQIA 73
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family
Back Show alignment and domain information
Score = 38.4 bits (90), Expect = 6e-05
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 4 KTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLD--TLA 58
+ R A E P AA+ D+E P ++ GL G+ V YGGAG+ TLA
Sbjct: 12 EIARRLAA-EFAPGAAERDRERRLPWAELDAFSQSGLWGITVPRAYGGAGVSYATLA 67
Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C
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Score = 33.1 bits (76), Expect = 0.004
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 18 AAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68
AA+ D++ P +++ L GL + V +EYGG G L+ + E+A
Sbjct: 14 AAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAA 64
DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
68
PF02771 113
Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal
99.75 KOG0141|consensus 421
99.71 KOG0139|consensus 398
99.67 cd01157 378
MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar
99.62 KOG0140|consensus 408
99.61 cd01160 372
LCAD Long chain acyl-CoA dehydrogenase. LCAD is an
99.61 PRK03354 380
crotonobetainyl-CoA dehydrogenase; Validated
99.59 TIGR03207 372
cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen
99.58 cd01151 386
GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd
99.58 TIGR03203 378
pimD_small pimeloyl-CoA dehydrogenase, small subun
99.58 cd01156 376
IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d
99.57 PTZ00461 410
isovaleryl-CoA dehydrogenase; Provisional
99.56 cd01162 375
IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d
99.56 cd01155 394
ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE
99.54 PLN02519 404
isovaleryl-CoA dehydrogenase
99.53 PRK12341 381
putative acyl-CoA dehydrogenase; Provisional
99.53 TIGR03204 395
pimC_large pimeloyl-CoA dehydrogenase, large subun
99.51 cd01158 373
SCAD_SBCAD Short chain acyl-CoA dehydrogenases and
99.5 cd01161 409
VLCAD Very long chain acyl-CoA dehydrogenase. VLCA
99.47 cd01153 407
ACAD_fadE5 Putative acyl-CoA dehydrogenases simila
99.46 PLN02526 412
acyl-coenzyme A oxidase
99.44 cd01152 380
ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases
99.41 cd01163 377
DszC Dibenzothiophene (DBT) desulfurization enzyme
99.4 cd01159 370
NcnH Naphthocyclinone hydroxylase. Naphthocyclinon
99.34 PRK13026 774
acyl-CoA dehydrogenase; Reviewed
99.31 PTZ00456 622
acyl-CoA dehydrogenase; Provisional
99.29 PRK09463 777
fadE acyl-CoA dehydrogenase; Reviewed
99.23 PLN02876 822
acyl-CoA dehydrogenase
99.17 COG1960 393
CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
99.17 KOG0138|consensus 432
98.91 KOG0137|consensus 634
98.48 PTZ00457 520
acyl-CoA dehydrogenase; Provisional
98.4 PLN02636 686
acyl-coenzyme A oxidase
97.52 cd01154 418
AidB Proteins involved in DNA damage response, sim
97.45 PLN02312 680
acyl-CoA oxidase
93.49 KOG1469|consensus 392
91.07 cd00567 327
ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac
87.11
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1
Back Hide alignment and domain information
Probab=99.75 E-value=3.4e-18 Score=86.57 Aligned_cols=68 Identities=43% Similarity=0.794 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.|...++|.++.+|+++|+++++.||+++.+|++|||.++++.+.+++.+++++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~ 73 (113)
T PF02771_consen 6 ALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELAR 73 (113)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhh
Confidence 37899999999999999999988889999999999999999999999999999999999999999874
3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
>KOG0141|consensus
Back Show alignment and domain information
Probab=99.71 E-value=2.2e-17 Score=95.74 Aligned_cols=68 Identities=43% Similarity=0.692 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCC--HHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFP--ADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++++++|+++++.|.+.++|....|+ +++|+++++.|+++++.|++|||.|+++...++++||++|
T Consensus 47 ~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sr 116 (421)
T KOG0141|consen 47 QLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISR 116 (421)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHh
Confidence 3789999999999999999999999994 8999999999999999999999999999999999999986
>KOG0139|consensus
Back Show alignment and domain information
Probab=99.67 E-value=2.2e-16 Score=92.26 Aligned_cols=67 Identities=55% Similarity=0.873 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+.+.+.|..+++|+++.+|..+++.+.++|++++.+|++|||.|.++..+.+++||+++
T Consensus 44 l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk 110 (398)
T KOG0139|consen 44 LQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISK 110 (398)
T ss_pred HHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999999999999999999999999999999999985
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.62 E-value=1.8e-15 Score=89.35 Aligned_cols=67 Identities=40% Similarity=0.618 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++++.|...++|..+.+|.++|+.+.+.||+++.+|++|||.|++..+.+.+.+++++
T Consensus 8 l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~ 74 (378)
T cd01157 8 FQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAY 74 (378)
T ss_pred HHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 6899999999999998888888888999999999999999999999999999999999999999974
MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
>KOG0140|consensus
Back Show alignment and domain information
Probab=99.61 E-value=3.1e-15 Score=86.80 Aligned_cols=67 Identities=39% Similarity=0.645 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|.++++.|.+.++|..+.||.+++++..++|+.+..+|++|||.|++..+.+++.|+|++
T Consensus 35 ~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~Lay 101 (408)
T KOG0140|consen 35 FQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAY 101 (408)
T ss_pred HHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHc
Confidence 6789999999999999999999999999999999999999999999999999999999999999974
>cd01160 LCAD Long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.61 E-value=3.1e-15 Score=88.16 Aligned_cols=68 Identities=35% Similarity=0.558 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.|...++|.++.+|+++|+.+.+.||+++.+|++|||.|+++.+.+.+.+++++
T Consensus 5 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~ 72 (372)
T cd01160 5 AFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELAR 72 (372)
T ss_pred HHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHH
Confidence 36899999999999988888888888999999999999999999999999999999999999999875
LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Back Show alignment and domain information
Probab=99.59 E-value=7.3e-15 Score=87.07 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHhhh-chhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQEL-KPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+.+++ .+...++|..+.+|.++|+.|.+.||+++.+|++|||.|+++.+.+.+.+++++
T Consensus 11 ~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~ 79 (380)
T PRK03354 11 LFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGR 79 (380)
T ss_pred HHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 37899999999876 466667888888999999999999999999999999999999999999999975
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.58 E-value=7.8e-15 Score=86.66 Aligned_cols=67 Identities=33% Similarity=0.572 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++.+.|...+.|..+.+|+++|+.+.+.||+++.+|++|||.|+++.+.+.+.+++++
T Consensus 8 l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~ 74 (372)
T TIGR03207 8 LADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIAR 74 (372)
T ss_pred HHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHh
Confidence 6799999999999998888888888999999999999999999999999999999999999999975
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
>cd01151 GCD Glutaryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.58 E-value=9.5e-15 Score=86.69 Aligned_cols=66 Identities=33% Similarity=0.607 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++++.|...+.|..+.+|.++|+++.+.||+++ +|++|||.|+++.+...+.+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~ 85 (386)
T cd01151 20 IRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVER 85 (386)
T ss_pred HHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHh
Confidence 678999999999999888888888899999999999999999 999999999999999999999874
Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit
Back Show alignment and domain information
Probab=99.58 E-value=1.1e-14 Score=86.54 Aligned_cols=68 Identities=18% Similarity=0.294 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHhhhchhHH--HhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAA--KLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.+... .+|..+.||+++|+.+.+.||+++.+|++|||.|++..+.+++.|++++
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~ 79 (378)
T TIGR03203 10 LLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGK 79 (378)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhC
Confidence 3789999999998876543 3466778999999999999999999999999999999999999999975
Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
>cd01156 IVD Isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.57 E-value=1.1e-14 Score=85.93 Aligned_cols=67 Identities=48% Similarity=0.897 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++++.|.+.+.|..+.+|+++|+.+.+.||+++.+|++|||.|+++.+...+.+++++
T Consensus 9 l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~ 75 (376)
T cd01156 9 LRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISR 75 (376)
T ss_pred HHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhc
Confidence 6899999999999998888888888999999999999999999999999999999999999999875
Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.56 E-value=1.6e-14 Score=86.42 Aligned_cols=67 Identities=36% Similarity=0.560 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+.+++.|.+.+.|..+.+|+++|+.+.+.||+++.+|++|||.|+++.+...+.+++++
T Consensus 44 l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~ 110 (410)
T PTZ00461 44 LRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSK 110 (410)
T ss_pred HHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHh
Confidence 6789999999999998888888889999999999999999999999999999999999999999875
>cd01162 IBD Isobutyryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.56 E-value=1.5e-14 Score=85.55 Aligned_cols=68 Identities=32% Similarity=0.659 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.|.+.++|..+.+|+++|+.+.+.||+++.+|++|||.|++..+.+.+.+++++
T Consensus 7 ~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~ 74 (375)
T cd01162 7 AIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALST 74 (375)
T ss_pred HHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHh
Confidence 37899999999999998888888889999999999999999999999999999999999999999874
Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2
Back Show alignment and domain information
Probab=99.54 E-value=2.3e-14 Score=85.28 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhh-----------CCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKE-----------HLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.|...++|+. ..+++++|+.+++.||+++.+|++|||.|+++.+.+.+.|++++
T Consensus 5 ~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~ 83 (394)
T cd01155 5 ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGR 83 (394)
T ss_pred HHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhh
Confidence 378999999999999987777643 12336899999999999999999999999999999999999974
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
>PLN02519 isovaleryl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.53 E-value=3.7e-14 Score=84.73 Aligned_cols=67 Identities=40% Similarity=0.688 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHH--HHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPAD--QIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++++.|...++|..+.+|.+ +|+.|.+.||+++.+|++|||.|+++.+.+.+.+++++
T Consensus 33 ~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~ 101 (404)
T PLN02519 33 FKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISR 101 (404)
T ss_pred HHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhh
Confidence 67899999999999988888888888865 79999999999999999999999999999999999975
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.53 E-value=6.1e-14 Score=83.16 Aligned_cols=67 Identities=21% Similarity=0.396 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhc-hhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELK-PIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.++.|+.+.+. +...++|+.+.+|.++|+.+.+.||+++.+|++|||.|+++.+.+.+.+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~ 79 (381)
T PRK12341 12 LLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSK 79 (381)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhh
Confidence 67899999999886 46677888888999999999999999999999999999999999999999975
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit
Back Show alignment and domain information
Probab=99.51 E-value=9.4e-14 Score=82.88 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHhhhchhHHHh-hhhCCCCH----HHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKL-DKEHLFPA----DQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++++++|+.+++.|...+. .....+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.+.|++++
T Consensus 10 ~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~ 82 (395)
T TIGR03204 10 AFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQS 82 (395)
T ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHh
Confidence 378999999999998865443 23334563 899999999999999999999999999999999999975
Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases
Back Show alignment and domain information
Probab=99.50 E-value=9.2e-14 Score=81.89 Aligned_cols=67 Identities=52% Similarity=0.929 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+.+++.+.+.+.|..+.+|.++|+.+.+.||+++.+|++|||.|.++.+.+.+.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~ 72 (373)
T cd01158 6 IRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAK 72 (373)
T ss_pred HHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHh
Confidence 6889999999989888888888888999999999999999999999999999999999999999874
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.47 E-value=1.8e-13 Score=81.89 Aligned_cols=65 Identities=31% Similarity=0.482 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++++.|. .++..+.+|.++|+.+.+.||+++.+|++|||.|++..+...+.+++++
T Consensus 34 l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~ 98 (409)
T cd01161 34 LVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM 98 (409)
T ss_pred HHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh
Confidence 6799999999998875 3566778999999999999999999999999999999999999999975
VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5
Back Show alignment and domain information
Probab=99.46 E-value=3.9e-13 Score=80.45 Aligned_cols=67 Identities=27% Similarity=0.440 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCC--------CC---HHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHL--------FP---ADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++++++|+.+.+.|.+.++|.+.. || .++|+.|.+.||+++.+|++|||.|+++.+...+.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~ 78 (407)
T cd01153 1 VLEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSR 78 (407)
T ss_pred ChHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHh
Confidence 4789999999999998888887654 88 6789999999999999999999999999999999999874
Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
>PLN02526 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=99.44 E-value=5.6e-13 Score=79.95 Aligned_cols=66 Identities=35% Similarity=0.572 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++++.|...+.+....+|.++|+++.+.||+++.+ ++|||.|+++.+.+.+++++++
T Consensus 36 l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~ 101 (412)
T PLN02526 36 LRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVAR 101 (412)
T ss_pred HHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHh
Confidence 68899999999998887776667789999999999999999999 9999999999999999999975
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
Back Show alignment and domain information
Probab=99.41 E-value=4.1e-13 Score=79.63 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHhhhchhHHH-----hhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAK-----LDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.|.... ++..+.+|.++++.|.+.||+++.+|++|||.|+++.+.+.+.+++++
T Consensus 5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~ 77 (380)
T cd01152 5 AFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAA 77 (380)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 36889999999999886532 244567899999999999999999999999999999999999999874
Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C
Back Show alignment and domain information
Probab=99.40 E-value=1.4e-12 Score=77.19 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=56.5
Q ss_pred HHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 5 TCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
.+++++. .+.+.+.++|+.+.+|.++|+.+.+.||+++.+|++|||.|+++.+...+.+++++
T Consensus 2 ~~~~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~ 64 (377)
T cd01163 2 RARPLAA-RIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAA 64 (377)
T ss_pred hHHHHHH-HHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHh
Confidence 3556665 47788888999999999999999999999999999999999999999999999975
DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
>cd01159 NcnH Naphthocyclinone hydroxylase
Back Show alignment and domain information
Probab=99.34 E-value=4.5e-12 Score=74.98 Aligned_cols=62 Identities=21% Similarity=0.447 Sum_probs=55.5
Q ss_pred HHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 6 CRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++++. +.+.+.++|.++.||.++|+.+++.||+++.+|++|||.|+++.+.+.+.+++++
T Consensus 3 ~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~ 64 (370)
T cd01159 3 AEDLAPL-IRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAE 64 (370)
T ss_pred HHHHHHH-HHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHh
Confidence 3445553 7788888999999999999999999999999999999999999999999999975
Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.31 E-value=8.2e-12 Score=79.69 Aligned_cols=66 Identities=21% Similarity=0.425 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhhchh---HHHh---hhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHh
Q psy1305 2 LQKTCRDFAQQELKPI---AAKL---DKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIA 67 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~ 67 (68)
+.++-++|+++.+.+. ..++ ++.+.+|+++|+.+++.||+++.+|++|||.|++..+.+.++++++
T Consensus 78 l~~eeq~fl~~~v~~l~~~~~e~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela 149 (774)
T PRK13026 78 LTAEEQAFIDNEVETLLTMLDDWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIA 149 (774)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHH
Confidence 3456777877776664 3333 3467899999999999999999999999999999999999999986
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=99.29 E-value=1.5e-11 Score=77.20 Aligned_cols=65 Identities=29% Similarity=0.389 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCC---------C---HHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHH
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLF---------P---ADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEI 66 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l 66 (68)
+++++++|+.+++.|...+.|+++.+ | +++|+.+.+.||+++.+|++|||.|++......+.|.+
T Consensus 63 il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~ 139 (622)
T PTZ00456 63 LLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELM 139 (622)
T ss_pred HHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHH
Confidence 68999999999999988888876543 5 58999999999999999999999999987555555544
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Back Show alignment and domain information
Probab=99.23 E-value=5.5e-11 Score=76.08 Aligned_cols=45 Identities=20% Similarity=0.443 Sum_probs=42.5
Q ss_pred hCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 24 EHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 24 ~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
.+.+|+++|+.+++.||+++.+|++|||.|++..+.+.+.+++++
T Consensus 107 ~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~ 151 (777)
T PRK09463 107 LADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLAS 151 (777)
T ss_pred ccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999999999999874
>PLN02876 acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=99.17 E-value=1.3e-10 Score=74.78 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhh-------CCCC-HHHHHHHH-HcCCCcccCCcc-----------------------
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKE-------HLFP-ADQIKKLG-ALGLMGVLVDEE----------------------- 48 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~l~-~~G~~~~~~p~~----------------------- 48 (68)
++++++++|+++++.|...++++. ..+| .+.|+++. +.||+++.+|++
T Consensus 408 ~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (822)
T PLN02876 408 ELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSAD 487 (822)
T ss_pred HHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccccccccccc
Confidence 378999999999988876665532 1377 57777775 999999999995
Q ss_pred -cCCCCCCHHHHHHHHHHHhC
Q psy1305 49 -YGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 49 -~GG~g~~~~~~~~~~e~l~~ 68 (68)
|||.|+++.+.+.+.|++++
T Consensus 488 ~~GG~G~~~~~~~~~~Eelg~ 508 (822)
T PLN02876 488 QLLGAGLSNLEYGYLCEIMGR 508 (822)
T ss_pred cCCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999975
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Back Show alignment and domain information
Probab=99.17 E-value=1.1e-10 Score=69.46 Aligned_cols=67 Identities=40% Similarity=0.783 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhchhHHHhhh---hCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDK---EHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+.+.+.|...+.+. ...+|+++++.+.+.|++++.+|++|||.+.+......+.+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~ 81 (393)
T COG1960 12 LRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELAR 81 (393)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHh
Confidence 5678999999989877776665 578889999999999999999999999999999999999999874
>KOG0138|consensus
Back Show alignment and domain information
Probab=98.91 E-value=4.2e-09 Score=61.79 Aligned_cols=66 Identities=24% Similarity=0.606 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+|++|++++.|+..+..++..|++++..+++..|+++..+ +.||..|.+.+.+.++..|+.|
T Consensus 62 ir~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl~~rEveR 127 (432)
T KOG0138|consen 62 IRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGLLAREVER 127 (432)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcc-cCcCCCchHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999 8999999999999999998864
>KOG0137|consensus
Back Show alignment and domain information
Probab=98.48 E-value=2.9e-07 Score=57.63 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=44.2
Q ss_pred HHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHh
Q psy1305 19 AKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIA 67 (68)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~ 67 (68)
+..|..+..++..++.|++.|++++.+|.+|+|.|+++.++..+.|.++
T Consensus 102 ~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~ 150 (634)
T KOG0137|consen 102 KKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVS 150 (634)
T ss_pred hhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccc
Confidence 4466677889999999999999999999999999999999999988764
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Back Show alignment and domain information
Probab=98.40 E-value=4.6e-07 Score=56.46 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=33.9
Q ss_pred HHHHHHHc-CCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 31 QIKKLGAL-GLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 31 ~~~~l~~~-G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+-+.+.++ ||+++.+|++|||.|++..+.+.+.|++++
T Consensus 55 ~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr 93 (520)
T PTZ00457 55 IRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGT 93 (520)
T ss_pred HHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 33367788 999999999999999999999999999975
>PLN02636 acyl-coenzyme A oxidase
Back Show alignment and domain information
Probab=97.52 E-value=0.00038 Score=45.06 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhh---chhHHHhhhhCCCC-HHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQEL---KPIAAKLDKEHLFP-ADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+.+.+ .|....+++.+.++ +++++.+.+.|++++.+|++ ++.+...+.|++++
T Consensus 68 ~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~ 132 (686)
T PLN02636 68 IQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGS 132 (686)
T ss_pred HHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHh
Confidence 5788999988774 56566677677788 88999999999999999875 67778888887753
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product
Back Show alignment and domain information
Probab=97.45 E-value=0.00041 Score=42.28 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=33.9
Q ss_pred HHHHHHhhhchhHHHhhhhCC------CC---HHHHHHHHHcCCCcccCCcccCCCC
Q psy1305 6 CRDFAQQELKPIAAKLDKEHL------FP---ADQIKKLGALGLMGVLVDEEYGGAG 53 (68)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~G~~~~~~p~~~GG~g 53 (68)
..++++++ .|....+|..+. +| +++++.+.+.||+++ +|.++|+.|
T Consensus 37 ~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g 91 (418)
T cd01154 37 LARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR 91 (418)
T ss_pred HHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc
Confidence 34455555 577777887777 77 789999999999999 666666544
AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
>PLN02312 acyl-CoA oxidase
Back Show alignment and domain information
Probab=93.49 E-value=0.17 Score=33.28 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=32.7
Q ss_pred hhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 23 KEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 23 ~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+...++.+.++.+.+.|+++..+|++ |.+ +......+.|++++
T Consensus 102 ~~~~~~~~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~ 144 (680)
T PLN02312 102 QQREITMKRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGI 144 (680)
T ss_pred HHHHhHHHHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHH
Confidence 34456778999999999999999985 333 57777788887763
>KOG1469|consensus
Back Show alignment and domain information
Probab=91.07 E-value=0.24 Score=29.68 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCcccCCc--ccCCCCCCHHHHHHHHHHHhC
Q psy1305 29 ADQIKKLGALGLMGVLVDE--EYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 29 ~~~~~~l~~~G~~~~~~p~--~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+.+-+..+..|++++.+|. +--|.|++.+++..+.|.+++
T Consensus 30 ekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGr 71 (392)
T KOG1469|consen 30 EKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGR 71 (392)
T ss_pred HHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhcc
Confidence 3455555669999999995 335899999999999999875
>cd00567 ACAD Acyl-CoA dehydrogenase
Back Show alignment and domain information
Probab=87.11 E-value=1.6 Score=25.61 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHc
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 38 (68)
+++.+++|+.+++.+.....+....++++.++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 42 (327)
T cd00567 6 LRDSAREFAAEELEPYARERRETPEEPWELLAELGLL 42 (327)
T ss_pred HHHHHHHHHHHhccccHHhHHhhCCCCHHHHHHHHHH
Confidence 6789999999988887765555444555555444443
Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 68
d1jqia2 231
e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do
2e-16 d1rx0a2 231
e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H
5e-12 d1r2ja2 210
e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro
1e-11 d2d29a2 233
e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
1e-08 d1siqa2 236
e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH
2e-08 d3mdea2 231
e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge
3e-08 d2c12a2 259
e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox
5e-08 d1ukwa2 227
e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge
6e-08 d1buca2 232
e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do
1e-07 d1ivha2 236
e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM
1e-05
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.7 bits (164), Expect = 2e-16
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
ML++TCRDFA++EL PIAA+LDKEHLFP Q+KK+G LGL+ + V EE GAGLD LA
Sbjct: 13 MLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYS 72
Query: 61 VAMEE 65
+A+EE
Sbjct: 73 IALEE 77
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.1 bits (134), Expect = 5e-12
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
QK DFA +E+ P A+ D++ LFP D ++K LG GV + + GG+GL L
Sbjct: 16 EFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTS 75
Query: 61 VAMEEIA 67
V E +A
Sbjct: 76 VIFEALA 82
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]
Score = 54.7 bits (130), Expect = 1e-11
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 7 RD-FAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAG 53
RD + AA+ D P D + +LGA GL+ V E+GG G
Sbjct: 2 RDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLG 49
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]
Score = 46.9 bits (110), Expect = 1e-08
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLM 41
+ R+F + E+ P AA+ D+ FP D ++KL G+
Sbjct: 12 QVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVF 52
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 2e-08
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
+++ T R + Q+ L P ++ +F + I ++G LG++G + YG AG+ ++A
Sbjct: 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIK-GYGCAGVSSVAYG 78
Query: 61 VAMEEIAQ 68
+ E+ +
Sbjct: 79 LLARELER 86
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]
Score = 45.7 bits (107), Expect = 3e-08
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALH 60
Q T R FA++E+ P+AA+ D+ +P +K+ LGLM + E +GG GL +
Sbjct: 12 EFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSC 71
Query: 61 VAME 64
+ E
Sbjct: 72 LITE 75
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]
Score = 45.2 bits (105), Expect = 5e-08
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKE------HLFPADQIKKLGALGLMGVLVDEEY 49
++ + FA L +A+ + ++ GL+ V
Sbjct: 11 EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPL 65
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]
Score = 45.0 bits (105), Expect = 6e-08
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYG 50
LQ R FA++ + P+A + D++ P I+KL +GL+ ++ EEYG
Sbjct: 11 QLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]
Score = 43.9 bits (102), Expect = 1e-07
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGAL 38
K DF +++L P + D + ++ + I +L +L
Sbjct: 11 DFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSL 48
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (89), Expect = 1e-05
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQ--IKKLGALGLMGVLVDEEYGGAGLDTLA 58
L++T F Q+ L P A ++D+ + F + K+LG LG++G+ +YGG+GL L
Sbjct: 14 QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLE 73
Query: 59 LHVAME 64
+ ME
Sbjct: 74 HVLVME 79
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 68
d1jqia2 231
Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus
99.74 d2d29a2 233
Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI
99.72 d1rx0a2 231
Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)
99.71 d1ukwa2 227
Medium chain acyl-CoA dehydrogenase, NM domains {T
99.7 d3mdea2 231
Medium chain acyl-CoA dehydrogenase, NM domains {P
99.69 d1r2ja2 210
Protein FkbI {Streptomyces hygroscopicus [TaxId: 1
99.68 d2c12a2 259
Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55
99.63 d1ivha2 236
Isovaleryl-coa dehydrogenase, NM domains {Human (H
99.62 d1siqa2 236
Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie
99.45 d1buca2 232
Butyryl-CoA dehydrogenase, NM domains {Megasphaera
99.43
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}
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class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=4.7e-18 Score=92.86 Aligned_cols=67 Identities=64% Similarity=1.038 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHh
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIA 67 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~ 67 (68)
++++++++|+++++.|.+.++|+.+.+|.++|+++++.||+++.+|++|||.|++..+..++.++++
T Consensus 13 ~l~~~~r~f~~~~i~p~a~~~d~~~~~p~e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~ 79 (231)
T d1jqia2 13 MLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEIS 79 (231)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999876
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=9.1e-18 Score=91.76 Aligned_cols=68 Identities=40% Similarity=0.623 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++++|+|+++++.|.+.++|+++.+|+++|+++++.||+++.+|++|||.+++..+.+.+.+++++
T Consensus 12 ~l~~~~r~f~~~~i~p~a~e~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~ 79 (233)
T d2d29a2 12 QVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAY 79 (233)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHhCCCCHHHHHHHHHhccccccccccccccccchhhhccccccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999863
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.2e-17 Score=90.17 Aligned_cols=68 Identities=38% Similarity=0.656 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++++++|+++++.|.+.++|+++.+|+++|+++.++||+++.+|++|||.|++..+.+.+.+++++
T Consensus 16 ~l~~~~r~F~~~~i~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~ 83 (231)
T d1rx0a2 16 EFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALAT 83 (231)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHcCCcccccchhhccccccchhhhhhHHHHhh
Confidence 37899999999999999999999999999999999999999999999999999999999999998864
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=4.4e-17 Score=88.59 Aligned_cols=67 Identities=37% Similarity=0.607 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHh
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIA 67 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~ 67 (68)
++++.+++|+++++.|.+.++|+.+.+|+++|++++++||+++.+|++|||.|.++.+.+.+.|+++
T Consensus 11 ~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~ 77 (227)
T d1ukwa2 11 QLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELA 77 (227)
T ss_dssp HHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHhhhhhhhccccccCcccccccccccchhhhc
Confidence 3789999999999999999999999999999999999999999999999999999999999999876
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=5.8e-17 Score=88.05 Aligned_cols=68 Identities=35% Similarity=0.600 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.|.+.++|+++.+|+++|+++++.||+++.+|++|||.|++....+.+.|++++
T Consensus 12 ~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~ 79 (231)
T d3mdea2 12 EFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAY 79 (231)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcc
Confidence 37899999999999999999999999999999999999999999999999999999999999998863
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]
Probab=99.68 E-value=5.7e-17 Score=87.72 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=58.5
Q ss_pred HHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 7 RDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
..++.+.+.|++.++|+++.+|+++|+++++.||+++.+|++|||.|+++.+.+.+.|++++
T Consensus 3 ~a~~~~~i~~~Aae~d~~~~~p~~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~ 64 (210)
T d1r2ja2 3 DALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGS 64 (210)
T ss_dssp HHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHhHHHHHHhCCCCHHHHHHHHHcCCCcccCChhHccccccHHHHhhhhccccc
Confidence 45788889999999999999999999999999999999999999999999999999999874
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]
Probab=99.63 E-value=5.6e-16 Score=85.99 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhhchhHHHhhhh----C--CCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKE----H--LFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
+++.+++|+++++.|...+++.. + ..++++|++++++||+++.+|++|||.|+++.+.+++.|++++
T Consensus 12 l~~~~r~f~~~~~~p~~~~~~~~~d~~~~~~~~~e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~~~eel~~ 84 (259)
T d2c12a2 12 ARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFA 84 (259)
T ss_dssp HHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcchHHHhhhccccccccchHHHHHHHHHcCCCCcCCChHHhhccchhhhhhhhhhhccc
Confidence 78999999999999987665433 2 3478999999999999999999999999999999999999975
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=8.1e-16 Score=84.15 Aligned_cols=68 Identities=37% Similarity=0.649 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCC--HHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFP--ADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++.+++|+++++.|.+.++|..+.+| +++|+++.+.||+++.+|++|||.|+++.+...+.|++++
T Consensus 14 ~l~d~~~~f~~~~~~p~~~~~d~~~~~~~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~ 83 (236)
T d1ivha2 14 QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISR 83 (236)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhHHHHHhhCCCccHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhh
Confidence 3789999999999999999999888887 6899999999999999999999999999999999999863
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.1e-13 Score=75.55 Aligned_cols=67 Identities=25% Similarity=0.565 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCCCCCHHHHHHHHHHHhC
Q psy1305 1 MLQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGAGLDTLALHVAMEEIAQ 68 (68)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~~~e~l~~ 68 (68)
++++++++|+++++.|.+.++|+++.+|+++++++.+.|++++.+| ++||.|.+.....++++++++
T Consensus 20 ~l~d~~r~f~~~~i~p~~~~~d~~~~~p~~~~~~~~~~g~~~~~i~-~~gg~g~~~~~~~~~~e~~~~ 86 (236)
T d1siqa2 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIK-GYGCAGVSSVAYGLLARELER 86 (236)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCE-ETTEECCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCChhHHHHHhcCCCCHHHHHHhhhhhccccccc-ccccCCcCHHHHHHHHHhhhc
Confidence 3789999999999999999999999999999999999999999985 789999999999999999874
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]
Probab=99.43 E-value=3.3e-13 Score=73.19 Aligned_cols=65 Identities=32% Similarity=0.639 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhchhHHHhhhhCCCCHHHHHHHHHcCCCcccCCcccCCC---CCCHHHHHHHHHHH
Q psy1305 2 LQKTCRDFAQQELKPIAAKLDKEHLFPADQIKKLGALGLMGVLVDEEYGGA---GLDTLALHVAMEEI 66 (68)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~p~~~GG~---g~~~~~~~~~~e~l 66 (68)
+++.+++|+++++.|.+.++|+.+.+|+++|+.+++.|++++.+|++|||. +........+.+..
T Consensus 12 l~~~~r~f~~~~l~p~~~e~D~~~~~p~e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~ 79 (232)
T d1buca2 12 FLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEEL 79 (232)
T ss_dssp HHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHhhhcccccccccccccccccccchheehhhhhh
Confidence 789999999999999999999999999999999999999999999999965 55666666655543
