Psyllid ID: psy1312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
Protein Sequence
MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccHHHHHHHHHHHHccEEEcEEEEEccccccccccccHHHHHHHHHHccccHHcccccccccEEcccccccccccccccccccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccEEEEEEEEccccccccHHHHHHHHHHHHHHccEEEEEEHHHcccccEEEEHHHEHEHHcccccHHHHHccccccEcccccccccccccEEEEccccccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MADVEKKaatagkpkepkpktkkglpvvpesvLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKrgnyyipgeaKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLnkvsvgkqniICVEDLIHEVFtvgdnfkyasnalwpfklnnptggwrkktihyveggdfgnreDKINKLLRKMV
Flexible Loop (DISEMBL)
madvekkaatagkpkepkpktkkglpvvpesvlkkrkkrensriislhkkltalanrkkktreifiraekyvkayrakerdeiRLMReakkrgnyyipgeaklAFVIRIRGINRVAPKVRKTLQLLRLrqinngifvrlnkvsvgKQNIICVEDLIHEVFTVGDNFKYASNALWPFklnnptggwrKKTIhyveggdfgnredkINKLLRKMV
Low Complexity Region (SEG)
MADVekkaatagkpkepkpktkkgLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV
Disordered region (IsUnstruct)
********************************************ISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFG**************
Disordered Region (DISOPRED)
*****************************ESVLKKRKKRENSRI********************FIRAEKYVKAYRAKERDEIRLMREA*******IPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPT****KKTIHYVEGGDFGNREDKINKLLRKMV
Disordered Region (DISEMBL)
*************************PVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV
Disordered Region (DISPRO)
***********************GLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	213	2.2.26 [Sep-21-2011]
O01802	244	60S ribosomal protein L7	yes	N/A	0.896	0.782	0.5	4e-60
P32100	252	60S ribosomal protein L7	yes	N/A	0.915	0.773	0.504	3e-58
Q5ZJ56	246	60S ribosomal protein L7	yes	N/A	0.906	0.784	0.475	7e-53
P14148	270	60S ribosomal protein L7	yes	N/A	0.910	0.718	0.475	2e-52
Q58DT1	248	60S ribosomal protein L7	yes	N/A	0.896	0.770	0.479	3e-52
P05426	260	60S ribosomal protein L7	yes	N/A	0.896	0.734	0.475	5e-52
P18124	248	60S ribosomal protein L7	yes	N/A	0.896	0.770	0.475	5e-52
Q5R9R4	247	60S ribosomal protein L7	yes	N/A	0.896	0.773	0.475	6e-52
Q4R506	247	60S ribosomal protein L7	N/A	N/A	0.896	0.773	0.475	2e-51
Q6C603	250	60S ribosomal protein L7	yes	N/A	0.863	0.736	0.459	8e-49

>sp|O01802|RL7_CAEEL 60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1

 Score =  231 bits (588), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 120/240 (50%), Positives = 154/240 (64%), Gaps = 49/240 (20%)

Query: 23  KGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDE 82
           K +P VPE+VLK+RK+R ++R  +   K+T  A  K+K  + F RAEKYV+ YR  +++ 
Sbjct: 5   KKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEG 64

Query: 83  IRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKV 142
           +RL REA+ +G++Y+P E K+AFV+RIRGIN++ PK RK LQ+LRLRQINNG+FV+LNK 
Sbjct: 65  LRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKA 124

Query: 143 -------------------------------------------------SVGKQNIICVE 153
                                                            S+GK NIIC+E
Sbjct: 125 TLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLE 184

Query: 154 DLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
           DL HE+ TVG +FK A+N LWPFKLNNPTGGW KKT H+VEGGDFGNRED+IN LLRKMV
Sbjct: 185 DLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKMV 244

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.
Caenorhabditis elegans (taxid: 6239)

>sp|P32100|RL7_DROME 60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2

 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 124/246 (50%), Positives = 147/246 (59%), Gaps = 51/246 (20%)

Query: 18  KPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRA 77
           KP  KK LP VPES LK  KK+ + R+    ++L   A    + +E  +RAEKY   Y  
Sbjct: 8   KPAAKK-LPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNEYIK 66

Query: 78  KERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFV 137
            E+ EI+L R AKKR  +Y+P EAKLAFV+RIRGIN+VAPKVRK LQL RLRQINNG+F+
Sbjct: 67  AEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFI 126

Query: 138 RLNKVSVG--------------------------------------------------KQ 147
           +LNK ++                                                     
Sbjct: 127 KLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAH 186

Query: 148 NIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINK 207
            I CVEDL+HE+FTVG NFKYASN LWPFKLN PTGGWRKK  HYV GGDFGNRED+IN+
Sbjct: 187 QIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINR 246

Query: 208 LLRKMV 213
           LLRKMV
Sbjct: 247 LLRKMV 252

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Drosophila melanogaster (taxid: 7227)

>sp|Q5ZJ56|RL7_CHICK 60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1

 Score =  206 bits (525), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 145/242 (59%), Gaps = 49/242 (20%)

Query: 20  KTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKE 79
           K  K +P VPES+LK+R+    ++   L + L     RK + + I+ RA+ Y K YR   
Sbjct: 4   KEAKKVPSVPESLLKRRQAYAAAKAKRLKRLLAQKKFRKAQRKIIYERAKAYHKEYRHMY 63

Query: 80  RDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRL 139
           R EIR+ R A+K GNYY+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+L
Sbjct: 64  RQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKL 123

Query: 140 NKVSV-------------------------------------------------GKQNII 150
           NK S+                                                 GK  II
Sbjct: 124 NKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGII 183

Query: 151 CVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLR 210
           C+ED+IHE++TVG NFK  +N LWPFKL++P GG +KKTIH+VEGGD GNRED+IN+L+R
Sbjct: 184 CMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVEGGDAGNREDQINRLIR 243

Query: 211 KM 212
           +M
Sbjct: 244 RM 245

Binds to G-rich structures in 28S rRNA and in mRNAs. May play a regulatory role in the translation apparatus.

Gallus gallus (taxid: 9031)

>sp|P14148|RL7_MOUSE 60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2

 Score =  204 bits (520), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 146/244 (59%), Gaps = 50/244 (20%)

Query: 19  PKT-KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRA 77
           PKT KK +P VPE++ KKR+     ++  L KK      RK + + I+ +A+ Y K YR 
Sbjct: 26  PKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQ 85

Query: 78  KERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFV 137
             R EIR+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV
Sbjct: 86  MYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFV 145

Query: 138 RLNKVSV-------------------------------------------------GKQN 148
           +LNK S+                                                 GK  
Sbjct: 146 KLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFG 205

Query: 149 IICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKL 208
           IIC+EDLIHE++TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L
Sbjct: 206 IICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRL 265

Query: 209 LRKM 212
           +R+M
Sbjct: 266 IRRM 269

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Mus musculus (taxid: 10090)

>sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/240 (47%), Positives = 143/240 (59%), Gaps = 49/240 (20%)

Query: 22  KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERD 81
           KK +P VPE++ KKRK     +I  L KK      RK + + I+ +A+ Y K YR   R 
Sbjct: 8   KKKVPAVPETLKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRT 67

Query: 82  EIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK 141
           EIR+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK
Sbjct: 68  EIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNK 127

Query: 142 VSV-------------------------------------------------GKQNIICV 152
            S+                                                 GK  IIC+
Sbjct: 128 ASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICM 187

Query: 153 EDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
           EDLIHE++TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L+R+M
Sbjct: 188 EDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 247

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Bos taurus (taxid: 9913)

>sp|P05426|RL7_RAT 60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2

 Score =  203 bits (517), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 143/240 (59%), Gaps = 49/240 (20%)

Query: 22  KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERD 81
           KK +P VPE++ KKR+     ++  L KK      RK + + I+ +A+ Y K YR   R 
Sbjct: 20  KKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRT 79

Query: 82  EIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK 141
           EIR+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK
Sbjct: 80  EIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNK 139

Query: 142 VSV-------------------------------------------------GKQNIICV 152
            SV                                                 GK  IIC+
Sbjct: 140 ASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICM 199

Query: 153 EDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
           EDLIHE++TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L+R+M
Sbjct: 200 EDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 259

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Rattus norvegicus (taxid: 10116)

>sp|P18124|RL7_HUMAN 60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1

 Score =  203 bits (517), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 143/240 (59%), Gaps = 49/240 (20%)

Query: 22  KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERD 81
           KK +P VPE++ KKR+     +I  L KK      RK + + I+ +A+ Y K YR   R 
Sbjct: 8   KKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRT 67

Query: 82  EIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK 141
           EIR+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK
Sbjct: 68  EIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNK 127

Query: 142 VSV-------------------------------------------------GKQNIICV 152
            S+                                                 GK  IIC+
Sbjct: 128 ASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICM 187

Query: 153 EDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
           EDLIHE++TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L+R+M
Sbjct: 188 EDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 247

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Homo sapiens (taxid: 9606)

>sp|Q5R9R4|RL7_PONAB 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1

 Score =  203 bits (517), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 143/240 (59%), Gaps = 49/240 (20%)

Query: 22  KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERD 81
           KK +P VPE++ KKR+     +I  L KK      RK + + I+ +A+ Y K YR   R 
Sbjct: 7   KKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRT 66

Query: 82  EIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK 141
           EIR+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK
Sbjct: 67  EIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNK 126

Query: 142 VSV-------------------------------------------------GKQNIICV 152
            S+                                                 GK  IIC+
Sbjct: 127 ASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICM 186

Query: 153 EDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
           EDLIHE++TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L+R+M
Sbjct: 187 EDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 246

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Pongo abelii (taxid: 9601)

>sp|Q4R506|RL7_MACFA 60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/240 (47%), Positives = 142/240 (59%), Gaps = 49/240 (20%)

Query: 22  KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERD 81
           KK +P VPE++ KKR+     +I  L KK      RK + + I+ +A+ Y K YR   R 
Sbjct: 7   KKKVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRT 66

Query: 82  EIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK 141
           EIR+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK
Sbjct: 67  EIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNK 126

Query: 142 VSV-------------------------------------------------GKQNIICV 152
            S+                                                 GK  IIC+
Sbjct: 127 ASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICM 186

Query: 153 EDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
           EDLIHE+ TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L+R+M
Sbjct: 187 EDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 246

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs.

Macaca fascicularis (taxid: 9541)

>sp|Q6C603|RL7_YARLI 60S ribosomal protein L7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPL7 PE=3 SV=1

 Score =  193 bits (490), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 108/235 (45%), Positives = 136/235 (57%), Gaps = 51/235 (21%)

Query: 27  VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
           +VPE++LKKRK  +  R           A   +K + IF RAEKYVK YR  ER++IRL 
Sbjct: 13  LVPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVIFSRAEKYVKEYREAEREQIRLR 72

Query: 87  REAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS--- 143
           REAK  G +Y+P E KL FVIRI+GI+++APK RK LQLLRL QINNG+FVR+ K +   
Sbjct: 73  REAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAEL 132

Query: 144 ----------------------------------------------VGKQNIICVEDLIH 157
                                                         +GK  IIC+EDLIH
Sbjct: 133 LRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIH 192

Query: 158 EVFTVGDNFKYASNALWPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLR 210
           E++TVG  FK ASN LWPFKL+NP+GGW  R+K  HY+EGG  GNRE+ IN L++
Sbjct: 193 EIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGGSTGNREENINALIK 247

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
110456387	256	putative ribosomal protein L7, partial [	0.971	0.808	0.792	3e-97
18253049	262	ribosomal protein L7 [Spodoptera frugipe	0.995	0.809	0.583	2e-74
156550715	256	PREDICTED: 60S ribosomal protein L7-like	0.971	0.808	0.553	1e-72
357606697	263	ribosomal protein L7 [Danaus plexippus]	1.0	0.809	0.564	8e-72
112982844	269	ribosomal protein L7 [Bombyx mori] gi|54	0.934	0.739	0.598	1e-71
389610685	261	ribosomal protein L7 [Papilio polytes]	0.995	0.812	0.564	1e-71
389608173	261	ribosomal protein L7 [Papilio xuthus]	0.976	0.796	0.563	2e-71
315115355	262	ribosomal protein L7 [Euphydryas aurinia	0.995	0.809	0.568	2e-71
70909625	271	ribosomal protein L7e [Agriotes lineatus	0.995	0.782	0.551	3e-71
380020864	243	PREDICTED: 60S ribosomal protein L7-like	0.929	0.814	0.602	3e-71

>gi|110456387|gb|ABG74705.1| putative ribosomal protein L7, partial [Diaphorina citri]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 203/256 (79%), Positives = 205/256 (80%), Gaps = 49/256 (19%)

Query: 7   KAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFI 66
           KAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFI
Sbjct: 1   KAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFI 60

Query: 67  RAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLL 126
           RAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLL
Sbjct: 61  RAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLL 120

Query: 127 RLRQINNGIFVRLNKVSVG----------------------------------------- 145
           RLRQINNGIFVRLNK ++                                          
Sbjct: 121 RLRQINNGIFVRLNKATLNMLRICEPYITWGYPNLKSVKELIYKRGYLKIRRQRIPITSN 180

Query: 146 --------KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGD 197
                   KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGD
Sbjct: 181 KLIEKVLRKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGD 240

Query: 198 FGNREDKINKLLRKMV 213
           FGNREDKINKLLRKMV
Sbjct: 241 FGNREDKINKLLRKMV 256

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18253049|gb|AAL62469.1| ribosomal protein L7 [Spodoptera frugiperda]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/262 (58%), Positives = 176/262 (67%), Gaps = 50/262 (19%)

Query: 1   MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKK 60
           +A  +KKA    KP + K  +KK LP VPESVLK RK+RE  R   L   L   ++  KK
Sbjct: 2   VATTDKKAPAEKKPVKGKEDSKK-LPAVPESVLKHRKRREALRTRRLQVTLKRRSSAIKK 60

Query: 61  TREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVR 120
            +EIF RAE+YVK YR +ERDEIRL R+A+ RGNYY+PGEAKLAFVIRIRGIN+V+PKVR
Sbjct: 61  RKEIFKRAEQYVKEYRIRERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 120

Query: 121 KTLQLLRLRQINNGIFVRLNKVSV------------------------------------ 144
           K LQL RLRQINNG+FVRLNK +V                                    
Sbjct: 121 KVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKVNGQR 180

Query: 145 -------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIH 191
                        GKQNIICVEDLIHE+F+VG+ FKYASN LWPFKLNNPTGGWRKKTIH
Sbjct: 181 VPVTSNTIVEQKLGKQNIICVEDLIHEIFSVGEKFKYASNFLWPFKLNNPTGGWRKKTIH 240

Query: 192 YVEGGDFGNREDKINKLLRKMV 213
           YV+GGDFGNREDKIN+LLR+MV
Sbjct: 241 YVDGGDFGNREDKINELLRRMV 262

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550715|ref|XP_001607539.1| PREDICTED: 60S ribosomal protein L7-like [Nasonia vitripennis]

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/262 (55%), Positives = 174/262 (66%), Gaps = 55/262 (20%)

Query: 1   MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKK 60
           MAD +KK        +PK +  K LP VPESVLK+RK+RE ++   L   +   A+  KK
Sbjct: 1   MADAKKKET------KPKAEASKKLPAVPESVLKRRKRRETAKAARLQTSIKRRADHYKK 54

Query: 61  TREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVR 120
            +EIF RAE+YVK YR KERDEIRL+R+AKK+GNYYIPGEAKLAFVIRIRG+N+VAPKVR
Sbjct: 55  KKEIFKRAEQYVKEYRIKERDEIRLIRQAKKQGNYYIPGEAKLAFVIRIRGVNQVAPKVR 114

Query: 121 KTLQLLRLRQINNGIFVRLNKVSV------------------------------------ 144
           K LQL RL+QINNG+F++LNK ++                                    
Sbjct: 115 KVLQLFRLKQINNGVFIKLNKATINMLRIIEPYITWGYPNLKSVRELIYKRGFAKINRQR 174

Query: 145 -------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIH 191
                        G++NIIC EDLIHE+FTVG  FK+ASN LWPFKLN PTGGWRKKT H
Sbjct: 175 IPITSNAIIERALGRKNIICTEDLIHEIFTVGQKFKHASNFLWPFKLNTPTGGWRKKTNH 234

Query: 192 YVEGGDFGNREDKINKLLRKMV 213
           YVEGGDFGNREDKIN+LLR+M+
Sbjct: 235 YVEGGDFGNREDKINELLRRMI 256

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357606697|gb|EHJ65173.1| ribosomal protein L7 [Danaus plexippus]

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 148/262 (56%), Positives = 170/262 (64%), Gaps = 49/262 (18%)

Query: 1   MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKK 60
           +A  +KKAA A K      +  K LP VPESVLK RK+RE  R   +   +       KK
Sbjct: 2   VATTDKKAAPAEKKVVKGKEDSKKLPAVPESVLKHRKRREALRTRRIQVTIKRRTAAYKK 61

Query: 61  TREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVR 120
            +EIF RAE+YVK YR KERDEIRL R+A+ RGNYY+PGEAKLAFVIRIRGIN+V+PKVR
Sbjct: 62  RKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 121

Query: 121 KTLQLLRLRQINNGIFVRLNKVSV------------------------------------ 144
           K L+L RLRQINNG+F++LNK +V                                    
Sbjct: 122 KVLKLFRLRQINNGVFIKLNKATVNMLRIAEPYITWGYPNLKSVRELIYKRGFAKVKGQR 181

Query: 145 -------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIH 191
                         K NIICVEDLIHE+FTVGD FKYASN LWPFKLNNPTGGWRKKTIH
Sbjct: 182 VAITSNKIVEEKLSKSNIICVEDLIHEIFTVGDKFKYASNFLWPFKLNNPTGGWRKKTIH 241

Query: 192 YVEGGDFGNREDKINKLLRKMV 213
           YV+GGDFGNREDKIN+LLR+MV
Sbjct: 242 YVDGGDFGNREDKINELLRRMV 263

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112982844|ref|NP_001037135.1| ribosomal protein L7 [Bombyx mori] gi|54609201|gb|AAV34816.1| ribosomal protein L7 [Bombyx mori]

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/249 (59%), Positives = 166/249 (66%), Gaps = 50/249 (20%)

Query: 14  PKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVK 73
           P + K  +KK LP VPESVLK RK+RE  R   L   L   ++  KK REIF RAE+YVK
Sbjct: 22  PVKGKEDSKK-LPAVPESVLKHRKRREALRTRRLQVTLKRRSSAIKKKREIFKRAEQYVK 80

Query: 74  AYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINN 133
            YR KERDEIRL R+A+ RGNYY+PGEAKLAFVIRIRGIN+V+PKVRK LQL RLRQINN
Sbjct: 81  EYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINN 140

Query: 134 GIFVRLNKVSVG------------------------------------------------ 145
           G+FVRLNK +V                                                 
Sbjct: 141 GVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRL 200

Query: 146 -KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDK 204
            K NIICVEDLIHE+FTVG+ FKYASN LWPFKLNNPTGGWRKKTIHYV+GGDFGNREDK
Sbjct: 201 HKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDK 260

Query: 205 INKLLRKMV 213
           IN LLR+MV
Sbjct: 261 INDLLRRMV 269

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610685|dbj|BAM18954.1| ribosomal protein L7 [Papilio polytes]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/262 (56%), Positives = 172/262 (65%), Gaps = 50/262 (19%)

Query: 1   MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKK 60
           M  V +K  T  +P + K  +KK LP VPESVLK RK+R+  R   +   L   +   KK
Sbjct: 1   MVAVTEKKKTEKEPVKGKEDSKK-LPAVPESVLKHRKRRDALRTRRIAVTLKRRSAAIKK 59

Query: 61  TREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVR 120
            +EIF RAE+YVK YR +ERDEIRL R+A+ RGNYY+PGEAKLAFVIRIRGIN+V+PKVR
Sbjct: 60  KQEIFKRAEQYVKEYRIRERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 119

Query: 121 KTLQLLRLRQINNGIFVRLNKVSV------------------------------------ 144
           K LQL RLRQINNG+FVRLNK ++                                    
Sbjct: 120 KVLQLFRLRQINNGVFVRLNKATINMLRIAEPYVTWGYPNLKSVRELIYKRGFAKVKGQR 179

Query: 145 -------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIH 191
                        GK NIIC+EDLIHE+FTVG+ FKYASN LWPFKLNNPTGGWRKKTIH
Sbjct: 180 MPITSNKIIEDKLGKSNIICIEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIH 239

Query: 192 YVEGGDFGNREDKINKLLRKMV 213
           YV+GGDFGNREDKIN LLR+MV
Sbjct: 240 YVDGGDFGNREDKINDLLRRMV 261

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608173|dbj|BAM17698.1| ribosomal protein L7 [Papilio xuthus]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/266 (56%), Positives = 176/266 (66%), Gaps = 58/266 (21%)

Query: 1   MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRI----ISLHKKLTALAN 56
           M  V +K  T  +P + K  +KK LP VPESVLK RK+R+  R     ++L ++  A+  
Sbjct: 1   MVAVTEKKKTEKEPVKGKEGSKK-LPAVPESVLKHRKRRDALRTRRIAVTLKRRSVAI-- 57

Query: 57  RKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVA 116
             KK +EIF RAE+YVK YR +ERDEIRL R+A+ RGNYY+PGEAKLAFVIRIRGIN+V+
Sbjct: 58  --KKKQEIFKRAEQYVKEYRIRERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVS 115

Query: 117 PKVRKTLQLLRLRQINNGIFVRLNKVSV-------------------------------- 144
           PKVRK LQL RLRQINNG+FVRLNK +V                                
Sbjct: 116 PKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYITWGYPNLKSVRELIYKRGFAKV 175

Query: 145 -----------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRK 187
                            GK NIIC+EDLIHE+FTVG+ FKYASN LWPFKLNNPTGGWRK
Sbjct: 176 KGQRMPITSNKIIEDKLGKSNIICIEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 235

Query: 188 KTIHYVEGGDFGNREDKINKLLRKMV 213
           KTIHYV+GGDFGNREDKIN LLR+MV
Sbjct: 236 KTIHYVDGGDFGNREDKINDLLRRMV 261

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115355|gb|ADT80650.1| ribosomal protein L7 [Euphydryas aurinia]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/262 (56%), Positives = 174/262 (66%), Gaps = 50/262 (19%)

Query: 1   MADVEKKAATAGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKK 60
           +A  +KKA    K  + K  +KK LP VPESVLK RK+RE  R   +   +   +   KK
Sbjct: 2   VATTDKKAPAEKKVVKGKEDSKK-LPAVPESVLKHRKRREALRTRRIQVTIKRRSAALKK 60

Query: 61  TREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVR 120
            +EIF RAE+YVK YR KERDEIRL+R+A+ RGNYY+PGEAKLAFVIRIRGIN+V+PKVR
Sbjct: 61  RKEIFKRAEQYVKEYRIKERDEIRLVRQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVR 120

Query: 121 KTLQLLRLRQINNGIFVRLNKVSV------------------------------------ 144
           K L+L RLRQINNG+F++LNK +V                                    
Sbjct: 121 KVLKLFRLRQINNGVFIKLNKATVNMLRIAEPYITWGYPNLKSVRELIYKRGFAKVNGKR 180

Query: 145 -------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIH 191
                        GK NIICVEDLIHE+FTVGD FKYASN LWPFKLNNPTGGWRKKTIH
Sbjct: 181 TPIISNKVIEDKLGKCNIICVEDLIHEIFTVGDKFKYASNFLWPFKLNNPTGGWRKKTIH 240

Query: 192 YVEGGDFGNREDKINKLLRKMV 213
           YV+GGDFGNREDKIN+LLR+MV
Sbjct: 241 YVDGGDFGNREDKINELLRRMV 262

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909625|emb|CAJ17237.1| ribosomal protein L7e [Agriotes lineatus]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/272 (55%), Positives = 173/272 (63%), Gaps = 60/272 (22%)

Query: 1   MADVEKKAAT---------AGKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKL 51
           MA  EKK A          A KPKE  PKT KGLP VPESVLK RK+R  +R  ++  ++
Sbjct: 1   MAPTEKKVAEKKPGEKKAGAKKPKEA-PKTSKGLPAVPESVLKHRKRRLLARKHAVQSRI 59

Query: 52  TALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRG 111
               +  KK ++IF RAE+YVK YR KERDEIRL R+AK RGNYY+PG+AKLAFVIRIRG
Sbjct: 60  KKRTDNIKKRKDIFQRAEQYVKEYRIKERDEIRLARQAKNRGNYYVPGDAKLAFVIRIRG 119

Query: 112 INRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG-------------------------- 145
           +N+VAPKVRK LQL RLRQINNG+FV+LNK ++                           
Sbjct: 120 VNQVAPKVRKVLQLFRLRQINNGVFVKLNKATLNMLRICEPYITWGYPNLKSVRELVYKR 179

Query: 146 ------------------------KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNP 181
                                     NIIC EDLIHE+FTVG  FK+ASN LWPFKLN P
Sbjct: 180 GFAKVTGQRIPITSNKIIEDRLGKSSNIICTEDLIHEIFTVGSKFKFASNFLWPFKLNTP 239

Query: 182 TGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
           TGGWRKKT HYVEGGDFGNREDKIN+LLR+MV
Sbjct: 240 TGGWRKKTNHYVEGGDFGNREDKINELLRRMV 271

Source: Agriotes lineatus

Species: Agriotes lineatus

Genus: Agriotes

Family: Elateridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020864|ref|XP_003694297.1| PREDICTED: 60S ribosomal protein L7-like [Apis florea]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 164/239 (68%), Gaps = 41/239 (17%)

Query: 15  KEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKA 74
           KE +P+ KK LP VPESVLK+RK RE  R   L   +   ANR KK + IF RAEKYVK 
Sbjct: 6   KESEPEAKK-LPAVPESVLKRRKTREAVRAARLQISIKQRANRYKKRKAIFKRAEKYVKE 64

Query: 75  YRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNG 134
           YR KERDEIRLMR+AK RGNYYIPGEA+LAFVIRIRG+N+VAPKVRK LQL RL+QINNG
Sbjct: 65  YRTKERDEIRLMRQAKNRGNYYIPGEARLAFVIRIRGVNQVAPKVRKVLQLFRLKQINNG 124

Query: 135 IFVRLNKVSVG----------------------------------------KQNIICVED 154
           +FV+LNK ++                                         +  IIC+ED
Sbjct: 125 VFVKLNKATINMLRIVEPYITWGYPNLKSVRELIYKRGFAKINRQRIPITRRSGIICIED 184

Query: 155 LIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
           LIHE+FTVG  FK+ASN LWPFKLN P GGWRKKT HYVEGGDFGNREDKIN+LLR+MV
Sbjct: 185 LIHEIFTVGPKFKFASNFLWPFKLNTPNGGWRKKTNHYVEGGDFGNREDKINELLRRMV 243

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	213
WB|WBGene00004418	244	rpl-7 [Caenorhabditis elegans	0.591	0.516	0.523	1.6e-61
ZFIN|ZDB-GENE-030131-8654	246	rpl7 "ribosomal protein L7" [D	0.582	0.504	0.579	7.8e-56
UNIPROTKB|F1Q0Z2	248	RPL7 "Uncharacterized protein"	0.591	0.508	0.539	1.6e-55
UNIPROTKB|F1NCI4	252	RPL7 "60S ribosomal protein L7	0.591	0.5	0.539	3.3e-55
UNIPROTKB|F1NCI6	245	RPL7 "60S ribosomal protein L7	0.591	0.514	0.539	3.3e-55
UNIPROTKB|Q5ZJ56	246	RPL7 "60S ribosomal protein L7	0.591	0.512	0.539	3.3e-55
UNIPROTKB|G4N5C7	248	MGG_05237 "60S ribosomal prote	0.549	0.471	0.563	4.2e-55
ASPGD|ASPL0000069390	251	AN7107 [Emericella nidulans (t	0.582	0.494	0.516	2.6e-53
TAIR|locus:2086809	244	AT3G13580 [Arabidopsis thalian	0.553	0.483	0.516	8.7e-51
DICTYBASE|DDB_G0276441	246	rpl7 "S60 ribosomal protein L7	0.572	0.495	0.491	4.7e-46

WB|WBGene00004418 rpl-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 344 (126.2 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
 Identities = 66/126 (52%), Positives = 95/126 (75%)

Query:    25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIR 84
             +P VPE+VLK+RK+R ++R  +   K+T  A  K+K  + F RAEKYV+ YR  +++ +R
Sbjct:     7 VPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLR 66

Query:    85 LMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
             L REA+ +G++Y+P E K+AFV+RIRGIN++ PK RK LQ+LRLRQINNG+FV+LNK ++
Sbjct:    67 LKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATL 126

Query:   145 GKQNII 150
                 II
Sbjct:   127 PLLRII 132

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

ZFIN|ZDB-GENE-030131-8654 rpl7 "ribosomal protein L7" [Danio rerio (taxid:7955)]

 Score = 327 (120.2 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 73/126 (57%), Positives = 88/126 (69%)

Query:    25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTRE-IFIRAEKYVKAYRAKERDEI 83
             +P VPES+LK+R++    R + L KK  A     K TR+ IF RAE Y K Y+   R EI
Sbjct:     9 IPSVPESLLKRRQRFAAIRAVRL-KKAKADKKASKVTRKLIFKRAEAYHKEYKQLYRREI 67

Query:    84 RLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
             R+ R A+K GNYY+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG+FV+LNK S
Sbjct:    68 RMSRMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGVFVKLNKAS 127

Query:   144 VGKQNI 149
             +    I
Sbjct:   128 INMLRI 133

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

UNIPROTKB|F1Q0Z2 RPL7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 320 (117.7 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 68/126 (53%), Positives = 85/126 (67%)

Query:    25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIR 84
             +P VPE++ KKR+     +I  L KK      RK + + I+ +A+ Y K YR   R EIR
Sbjct:    11 VPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR 70

Query:    85 LMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
             + R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK SV
Sbjct:    71 MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASV 130

Query:   145 GKQNII 150
                 I+
Sbjct:   131 NMLRIV 136

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1NCI4 RPL7 "60S ribosomal protein L7" [Gallus gallus (taxid:9031)]

 Score = 317 (116.6 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 68/126 (53%), Positives = 86/126 (68%)

Query:    25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIR 84
             +P VPES+LK+R+    ++   L + L     RK + + I+ RA+ Y K YR   R EIR
Sbjct:    15 VPSVPESLLKRRQAYAAAKAKRLKRLLAQKKFRKAQRKIIYERAKAYHKEYRHMYRQEIR 74

Query:    85 LMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
             + R A+K GNYY+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK S+
Sbjct:    75 MARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI 134

Query:   145 GKQNII 150
                 I+
Sbjct:   135 NMLRIV 140

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|F1NCI6 RPL7 "60S ribosomal protein L7" [Gallus gallus (taxid:9031)]

 Score = 317 (116.6 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 68/126 (53%), Positives = 86/126 (68%)

Query:    25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIR 84
             +P VPES+LK+R+    ++   L + L     RK + + I+ RA+ Y K YR   R EIR
Sbjct:     8 VPSVPESLLKRRQAYAAAKAKRLKRLLAQKKFRKAQRKIIYERAKAYHKEYRHMYRQEIR 67

Query:    85 LMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
             + R A+K GNYY+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK S+
Sbjct:    68 MARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI 127

Query:   145 GKQNII 150
                 I+
Sbjct:   128 NMLRIV 133

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q5ZJ56 RPL7 "60S ribosomal protein L7" [Gallus gallus (taxid:9031)]

 Score = 317 (116.6 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 68/126 (53%), Positives = 86/126 (68%)

Query:    25 LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIR 84
             +P VPES+LK+R+    ++   L + L     RK + + I+ RA+ Y K YR   R EIR
Sbjct:     9 VPSVPESLLKRRQAYAAAKAKRLKRLLAQKKFRKAQRKIIYERAKAYHKEYRHMYRQEIR 68

Query:    85 LMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
             + R A+K GNYY+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK S+
Sbjct:    69 MARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI 128

Query:   145 GKQNII 150
                 I+
Sbjct:   129 NMLRIV 134

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|G4N5C7 MGG_05237 "60S ribosomal protein L7" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 321 (118.1 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 67/119 (56%), Positives = 90/119 (75%)

Query:    27 VVPESVLKKRKKRENSRIISL-HKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRL 85
             +VPE++LKKRK +E +R   L  ++ T  AN+ K+ + IF RAEKYVK YR  ER++IRL
Sbjct:    12 LVPETLLKKRKSQEKARAERLAEQEKTKKANKDKR-QVIFKRAEKYVKEYRDAEREKIRL 70

Query:    86 MREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
              R AK+ G++Y+P E KL FV+RI+GIN++APK RK LQLLRL QINNG FVR+ K ++
Sbjct:    71 NRVAKQAGDFYVPAEQKLIFVVRIKGINKIAPKPRKILQLLRLLQINNGCFVRVTKATM 129

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000069390 AN7107 [Emericella nidulans (taxid:162425)]

 Score = 311 (114.5 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 64/124 (51%), Positives = 86/124 (69%)

Query:    27 VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
             +VPE++LKKRK +E +R  +  +     A  K+K   IF RAE YV+ YR  ER++IRL 
Sbjct:    15 LVPETLLKKRKSQEQARAAAREEAAKKKAANKEKRAVIFKRAESYVQEYRNAEREKIRLA 74

Query:    87 REAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGK 146
             R A++ GN+Y+P E KL FV+RI+GIN++AP+ RK LQLLRL QINNG FV+L K +   
Sbjct:    75 RVARQEGNFYVPEEPKLIFVVRIKGINKIAPQPRKILQLLRLLQINNGTFVKLTKATQEM 134

Query:   147 QNII 150
               II
Sbjct:   135 LTII 138

GO:0005730 "nucleolus" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2086809 AT3G13580 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 61/118 (51%), Positives = 83/118 (70%)

Query:    27 VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
             VVPESVLKKRK+ E   +    +   A     +K + IF RA++Y K Y+ KER+ I+L 
Sbjct:     9 VVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLK 68

Query:    87 REAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
             REAK +G +Y+  EAKL F+IRIRGIN + PK +K LQLLRLRQI NG+F+++NK ++
Sbjct:    69 REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATI 126

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

DICTYBASE|DDB_G0276441 rpl7 "S60 ribosomal protein L7" [Dictyostelium discoideum (taxid:44689)]

 Score = 288 (106.4 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 61/124 (49%), Positives = 81/124 (65%)

Query:    28 VPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFI-RAEKYVKAYRAKERDEIRLM 86
             VPES+LKKR   +  + + + K   A   R  +   ++  RAEKYV  Y   ER+ IRL 
Sbjct:    12 VPESILKKRATSQK-KAVDVAKLGRAQQLRNSRLNSVYFKRAEKYVSEYHKTEREAIRLN 70

Query:    87 REAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGK 146
             R AK  G +Y+P  AK+AFVIRIRGIN V+PK RK L+LLRL Q+NNG+FV+LNK S+  
Sbjct:    71 RIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINM 130

Query:   147 QNII 150
               ++
Sbjct:   131 LKLV 134

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHP1	RL74_ARATH	No assigned EC number	0.4510	0.8732	0.7622	yes	N/A
P05737	RL7A_YEAST	No assigned EC number	0.3755	0.8732	0.7622	yes	N/A
Q5R9R4	RL7_PONAB	No assigned EC number	0.475	0.8967	0.7732	yes	N/A
Q6C603	RL7_YARLI	No assigned EC number	0.4595	0.8638	0.736	yes	N/A
P05426	RL7_RAT	No assigned EC number	0.475	0.8967	0.7346	yes	N/A
Q6FSN6	RL7_CANGA	No assigned EC number	0.3914	0.8638	0.7540	yes	N/A
Q12213	RL7B_YEAST	No assigned EC number	0.3755	0.8732	0.7622	yes	N/A
P11874	RL7_DICDI	No assigned EC number	0.4212	0.8638	0.7479	yes	N/A
Q58DT1	RL7_BOVIN	No assigned EC number	0.4791	0.8967	0.7701	yes	N/A
Q755A7	RL7_ASHGO	No assigned EC number	0.4050	0.8732	0.7654	yes	N/A
P18124	RL7_HUMAN	No assigned EC number	0.475	0.8967	0.7701	yes	N/A
P14148	RL7_MOUSE	No assigned EC number	0.4754	0.9107	0.7185	yes	N/A
P32100	RL7_DROME	No assigned EC number	0.5040	0.9154	0.7738	yes	N/A
P25457	RL7B_SCHPO	No assigned EC number	0.4291	0.8450	0.72	yes	N/A
Q5ZJ56	RL7_CHICK	No assigned EC number	0.4752	0.9061	0.7845	yes	N/A
Q6BTA4	RL7_DEBHA	No assigned EC number	0.4017	0.8638	0.7634	yes	N/A
O01802	RL7_CAEEL	No assigned EC number	0.5	0.8967	0.7827	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	213
TIGR01310	235	TIGR01310, L7, 60S ribosomal protein L7, eukaryoti	4e-62
cd01657	159	cd01657, Ribosomal_L7_archeal_euk, Ribosomal prote	5e-44
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	5e-19
PRK06049	154	PRK06049, rpl30p, 50S ribosomal protein L30P; Revi	1e-09
pfam00327	52	pfam00327, Ribosomal_L30, Ribosomal protein L30p/L	9e-09
cd00355	53	cd00355, Ribosomal_L30_like, Ribosomal protein L30	1e-08
COG1841	55	COG1841, RpmD, Ribosomal protein L30/L7E [Translat	3e-07
TIGR01309	152	TIGR01309, L30P_arch, 50S ribosomal protein L30P,	9e-06

>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic

 Score =  192 bits (491), Expect = 4e-62
 Identities = 102/235 (43%), Positives = 133/235 (56%), Gaps = 51/235 (21%)

Query: 30  ESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREA 89
           E +LKKRK R+   +    +        KKK +  F RAE +VK YR  ER+ IRL R A
Sbjct: 1   ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLA 60

Query: 90  KKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV----- 144
           KK G +Y+P E KL FVIRI+GIN + PK RK L+LLRL+Q+NNG+FV++ K ++     
Sbjct: 61  KKPGKFYVPAEHKLVFVIRIKGINGIPPKPRKVLRLLRLKQVNNGVFVKVTKATLEMLRI 120

Query: 145 --------------------------------------------GKQNIICVEDLIHEVF 160
                                                       GK  IIC+EDLIHE++
Sbjct: 121 VEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTIIEQHLGKYGIICIEDLIHEIY 180

Query: 161 TVGDNFKYASNALWPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKMV 213
           TVG +FK  +N LWPFKL++P  GW  RKK  H++EGGDFGNRED IN+L++KM 
Sbjct: 181 TVGPHFKEVNNFLWPFKLSSPVKGWGKRKKVKHFIEGGDFGNREDFINELIKKMN 235

This model describes the eukaryotic 60S (cytosolic) ribosomal protein L7 and paralogs that may or may not also be L7. Human, Drosophila, and Arabidopsis all have both a typical L7 and an L7-related paralog. This family is designated subfamily rather than equivalog to reflect these uncharacterized paralogs. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues). Length = 235

>gnl|CDD|100099 cd01657, Ribosomal_L7_archeal_euk, Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome

 Score =  144 bits (365), Expect = 5e-44
 Identities = 62/159 (38%), Positives = 85/159 (53%), Gaps = 48/159 (30%)

Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG----------------- 145
           L  V+RIRGI  V PK+RKTLQLLRLR+INN +FV+L K ++G                 
Sbjct: 1   LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLE 60

Query: 146 -------------------------------KQNIICVEDLIHEVFTVGDNFKYASNALW 174
                                          K+ IIC+EDL HE++T G NFK  +N L 
Sbjct: 61  TLRELIYKRGRLKGNGQRIPLTDNYLVEKTLKKGIICIEDLAHEIYTGGPNFKEVNNFLP 120

Query: 175 PFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
           PF+L+ P GG++ K  H+ EGG+ G R + IN+L+R+M+
Sbjct: 121 PFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI 159

The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes. Length = 159

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 77.3 bits (191), Expect = 5e-19
 Identities = 43/71 (60%), Positives = 50/71 (70%)

Query: 31  SVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAK 90
           S+LKKRK+ E  R     K+    A RKKK + IF RAEKYVK YRA ERDEIRL REAK
Sbjct: 1   SLLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAK 60

Query: 91  KRGNYYIPGEA 101
           K+GN+Y+P E 
Sbjct: 61  KKGNFYVPAEP 71

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|235683 PRK06049, rpl30p, 50S ribosomal protein L30P; Reviewed

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 42/150 (28%)

Query: 106 VIRIRGINRVAPKVRKTLQLLRLRQINNGIFVR--------LNKVS----VGKQNIICVE 153
           VIRIRG   V   +  TL++LRL ++N+ + V         L KV      G+ +   + 
Sbjct: 5   VIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLA 64

Query: 154 DLI-HEVFTVGD----------NFKYAS-----NALW--------------PFKLNNPTG 183
           +L+       G+          N  Y S      AL                F+L+ P G
Sbjct: 65  ELLRKRGRLEGNKKLTDEYVKENTGYDSIEELAEALVEGEIKLKDLPGLKPVFRLHPPRG 124

Query: 184 GWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
           G+      + EGG+ G R +KIN+LLR+M 
Sbjct: 125 GFGGIKRPFKEGGELGYRGEKINELLRRMR 154

Length = 154

>gnl|CDD|201157 pfam00327, Ribosomal_L30, Ribosomal protein L30p/L7e

 Score = 49.7 bits (120), Expect = 9e-09
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLI 156
           L  + RIR I    PK +KTL+LL LR+IN  +FV+      G      V+ L+
Sbjct: 1   LLKITRIRSIIGRPPKQKKTLKLLGLRKINQTVFVKDTPAIRGMLRK--VKHLV 52

This family includes prokaryotic L30 and eukaryotic L7. Length = 52

>gnl|CDD|100098 cd00355, Ribosomal_L30_like, Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

 Score = 49.3 bits (119), Expect = 1e-08
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVGKQNIICVEDLI 156
            V R+R +    PK RKTL+ L LR+IN  +FV+      G      V+ L+
Sbjct: 1   KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRK--VKHLV 50

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea. Length = 53

>gnl|CDD|224754 COG1841, RpmD, Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK 141
            V  IR      PK+RKTL+LL LR+IN+ + V    
Sbjct: 2   KVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTP 38

Length = 55

>gnl|CDD|130376 TIGR01309, L30P_arch, 50S ribosomal protein L30P, archaeal

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 46/152 (30%)

Query: 106 VIRIRGINRVAPKVRKTLQLLRLRQINNGIFVR--------LNKVS-------------- 143
           VIRIRG   V   +  TL++LRL ++N+ +           L KV               
Sbjct: 3   VIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLE 62

Query: 144 ---------VGKQNII-----------CVEDLIHEVFTVGDNFKYASNALWPFKLNNPTG 183
                    VG   +             V++L   +         A      F+L+ P  
Sbjct: 63  LLIRKRGRLVGGDKVTDEYVKEVTGYESVDELAKALVEGEIKLSEAGLKP-VFRLHPPRK 121

Query: 184 GWRK--KTIHYVEGGDFGNREDKINKLLRKMV 213
           G++   KT  Y +GG+ G R +KIN+LLR+M 
Sbjct: 122 GFKGGIKT-PYRDGGELGYRGEKINELLRRMR 152

This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	213
TIGR01310	235	L7 60S ribosomal protein L7, eukaryotic. Members o	100.0
KOG3184|consensus	235		100.0
PRK06049	154	rpl30p 50S ribosomal protein L30P; Reviewed	100.0
TIGR01309	152	L30P_arch 50S ribosomal protein L30P, archaeal. Th	100.0
cd01657	159	Ribosomal_L7_archeal_euk Ribosomal protein L7, whi	100.0
PF08079	71	Ribosomal_L30_N: Ribosomal L30 N-terminal domain;	99.76
PF00327	52	Ribosomal_L30: Ribosomal protein L30p/L7e; InterPr	99.08
COG1841	55	RpmD Ribosomal protein L30/L7E [Translation, ribos	98.95
cd00355	53	Ribosomal_L30_like Ribosomal protein L30, which is	98.83
PRK05611	59	rpmD 50S ribosomal protein L30; Reviewed	98.53
cd01658	54	Ribosomal_L30 Ribosomal protein L30, which is foun	98.49
TIGR01308	55	rpmD_bact ribosomal protein L30, bacterial/organel	98.41

>TIGR01310 L7 60S ribosomal protein L7, eukaryotic

Probab=100.00  E-value=5.3e-64  Score=435.80  Aligned_cols=184  Identities=54%  Similarity=0.936  Sum_probs=179.5

Q ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCeeEEEEEe
Q psy1312          30 ESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRI  109 (213)
Q Consensus        30 E~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~kl~fVIRi  109 (213)
                      |++|||||++++++.++++++.+.+..++.+++.+|+|||+|+++|+++++|.+|++|+++++|++|+|++++|+|||||
T Consensus         1 e~llkkrk~~~~~~~~~~~~~~~~k~~~~~~k~~~fkr~e~~~~~y~~~e~d~~r~~r~~k~~~~~~~~~e~kl~fVIRi   80 (235)
T TIGR01310         1 ELLLKKRKARQELAVVRAKQAKAKKKRNKKKKKHYFKRAESFVHEYRKAERERIRLKRLAKKPGKFYVPAEHKLLFVIRI   80 (235)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCeEEEEEEe
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHhcCcccccceEEEecCcccc---------------------------------------------
Q psy1312         110 RGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV---------------------------------------------  144 (213)
Q Consensus       110 rG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~---------------------------------------------  144 (213)
                      ||++++||++++||++|||+++||||||++|++|.                                             
T Consensus        81 rG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~VepYVt~G~p~l~tvr~Li~KRG~~k~~~~~v~Ltdn~ii  160 (235)
T TIGR01310        81 KGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEPYVAYGYPNLKSVRELIYKRGFAKINGQRVPLTDNTII  160 (235)
T ss_pred             CCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCCeEEEecCCHHHHHHHHHHhCceeeCCCeeeCChhHHH
Confidence            99999999999999999999999999999999998                                             


Q ss_pred             ----cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccc--cccccccCCCCCCChHHHHHHHHhhC
Q psy1312         145 ----GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRK--KTIHYVEGGDFGNREDKINKLLRKMV  213 (213)
Q Consensus       145 ----G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~--~~~~~~~GG~~G~r~~~IN~LI~rM~  213 (213)
                          |++||+||||||||||++|+||+++++|||||+||||++||+.  +++||.+||++||||++||+||++|+
T Consensus       161 E~~lg~~gi~ciEDliheI~t~g~~fk~i~~~L~PFrL~~Pr~G~~~~~~~~~~~egG~~G~r~~~IN~Li~rM~  235 (235)
T TIGR01310       161 EQHLGKYGIICIEDLIHEIYTVGPHFKEVNNFLWPFKLSSPVKGFGKRKKVKHFKEGGDFGNREDAINELIRKMN  235 (235)
T ss_pred             HHhhccCCcccHHHHHHHHHhCCCCHHHHhcCccCccCCCCcccccccCcccCcccCCCCCccHHHHHHHHHHhC
Confidence                7899999999999999999999999999999999999999985  77999999999999999999999997

Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).

>KOG3184|consensus

Probab=100.00  E-value=2.7e-50  Score=349.90  Aligned_cols=185  Identities=55%  Similarity=0.889  Sum_probs=181.7

Q ss_pred             CchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCeeEEEE
Q psy1312          28 VPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVI  107 (213)
Q Consensus        28 vpE~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~kl~fVI  107 (213)
                      +||++|| ||+++++++++++++.+.+..+++++...|+++++|.++|++++++.++++|.+++.+++|+|++++++|||
T Consensus         1 vPE~llk-rk~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~e~~~~~~~~~~r~~i~~~r~~~~~~~~~~~~e~~l~fvv   79 (235)
T KOG3184|consen    1 VPENLLK-RKAQAELATQALRKLLAKKEIRKKKRKLFLKKAKHYHKEYRQKYRTEIRMARIARKAGNFYVPAEPKLAFVI   79 (235)
T ss_pred             Cchhhhh-hhhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHhccccCcCccccccceee
Confidence            6999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc-------------------------------------------
Q psy1312         108 RIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV-------------------------------------------  144 (213)
Q Consensus       108 RirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~-------------------------------------------  144 (213)
                      ||+|+++++|+++++|++|||.+||+||||++|+++.                                           
T Consensus        80 ri~gin~v~pk~~k~l~lLrL~~If~g~fVKlnk~~~~mLriVepYVa~G~pnlksv~elI~krG~~k~~~~k~i~ltdn  159 (235)
T KOG3184|consen   80 RIRGVNGVEPKSRKVLQLLRLKQIFNGTFVKLNKATVNMLRIVEPYIAWGYPNLKSVSELIYKRGYGKKIEKKRIPLTDN  159 (235)
T ss_pred             ecccccccCchHHHHHHHHHhhccccceeEEechhhhhhHhhcccceeeccCcHHHHHHHHhhcccccccCCceeccccc
Confidence            9999999999999999999999999999999999986                                           


Q ss_pred             -------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhhC
Q psy1312         145 -------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV  213 (213)
Q Consensus       145 -------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM~  213 (213)
                             |++|++|+||++|+|+++|++|+++++|||||+|++|.+||..+..||.+||++||||+.||+|+++|+
T Consensus       160 ~ii~~~lgk~~~i~~edl~hei~~vg~~fk~~n~fL~pf~l~~~~~~~~~k~~h~~e~g~~g~~~~~in~L~~~~~  235 (235)
T KOG3184|consen  160 FLIERKLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPVAGHKTKFGHFKEGGTAGNRGEHINDLIRQLN  235 (235)
T ss_pred             hHHHHhcCCcceeechhhhccccccchhHHHHhhccCceeccCcccchhhhccccccCCCCCchHHHHHHHHHhcC
Confidence                   789999999999999999999999999999999999999999988999999999999999999999996

>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed

Probab=100.00  E-value=3.9e-42  Score=282.68  Aligned_cols=112  Identities=30%  Similarity=0.458  Sum_probs=108.3

Q ss_pred             eeEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc-------------------------------------
Q psy1312         102 KLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV-------------------------------------  144 (213)
Q Consensus       102 kl~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~-------------------------------------  144 (213)
                      .|+||+||||.++++|++++||++|||+++|+|||+++|+++.                                     
T Consensus         1 ~~~~ViriRg~ig~~~~~r~tL~~LgL~ki~~~V~v~~tp~~~GML~kV~~~V~~ge~~~~tv~~Li~kRG~~~g~~~lt   80 (154)
T PRK06049          1 EMYAVIRIRGRVNVPRDIADTLKMLRLHRVNHCVLVPETPSYKGMLQKVKDYVTWGEIDADTLAELLRKRGRLEGNKKLT   80 (154)
T ss_pred             CcEEEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhhceeEEeeCchHHHHHHHHHhCcccCCCCCC
Confidence            4799999999999999999999999999999999999999998                                     


Q ss_pred             -----cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhhC
Q psy1312         145 -----GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV  213 (213)
Q Consensus       145 -----G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM~  213 (213)
                           ..+||+|+|||||+||++|++|+++++|+|||+||||++||++++++|.+||++||||++||+||++|+
T Consensus        81 d~~i~e~~g~~~iedl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~~k~~~~~gG~~G~r~~~In~Li~rM~  154 (154)
T PRK06049         81 DEYVKENTGYDSIEELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGGIKRPFKEGGELGYRGEKINELLRRMR  154 (154)
T ss_pred             HHHHHHhcCCccHHHHHHHHHhCCCCHHHhhcccCceecCCcchhhhhcccccccCCCCCccHHHHHHHHHHhC
Confidence                 258999999999999999999999999999999999999999888999999999999999999999996

>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal

Probab=100.00  E-value=8.1e-41  Score=274.35  Aligned_cols=109  Identities=29%  Similarity=0.458  Sum_probs=104.4

Q ss_pred             EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc---------------------------------------
Q psy1312         104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV---------------------------------------  144 (213)
Q Consensus       104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~---------------------------------------  144 (213)
                      ++||||||.++++|++++||++|||+++|+|||+++|+++.                                       
T Consensus         1 ~~ViriRg~ig~~~~~r~tL~~LrL~ri~~~V~v~~tp~~~gML~kV~~yV~~ge~~~~tv~~Li~kRG~~~g~~~ltd~   80 (152)
T TIGR01309         1 LAVIRIRGTVDVPRDIADTLEMLRLHRVNHCVLYPETPTYLGMLQKVKDYVTWGEIDEDTLELLIRKRGRLVGGDKVTDE   80 (152)
T ss_pred             CeEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhHhheeEecCCHHHHHHHHHHhccccCCCcCCHH
Confidence            58999999999999999999999999999999999999998                                       


Q ss_pred             ---cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCccc-ccccccccCCCCCCChHHHHHHHHhhC
Q psy1312         145 ---GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWR-KKTIHYVEGGDFGNREDKINKLLRKMV  213 (213)
Q Consensus       145 ---G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~-~~~~~~~~GG~~G~r~~~IN~LI~rM~  213 (213)
                         .++||+|+||||||||++|++|++++ |+|||+||||++||+ +++++|.+||++||||++||+||++|+
T Consensus        81 ~i~e~~g~~~iedl~~~i~~~~~~f~~~~-~~~~FrL~pPr~G~~~~~k~~~~~gG~~G~r~~~In~Li~rMi  152 (152)
T TIGR01309        81 YVKEVTGYESVDELAKALVEGEIKLSEAG-LKPVFRLHPPRKGFKGGIKTPYRDGGELGYRGEKINELLRRMR  152 (152)
T ss_pred             HHHHHcCCccHHHHHHHHHcCCCCccccC-ccCceeCCCCCcccccccccccccCCCCcccHHHHHHHHHHhC
Confidence               25689999999999999999999996 999999999999998 688999999999999999999999996

This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.

>cd01657 Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome

Probab=100.00  E-value=1.1e-40  Score=275.34  Aligned_cols=111  Identities=55%  Similarity=0.966  Sum_probs=106.8

Q ss_pred             eEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc--------------------------------------
Q psy1312         103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV--------------------------------------  144 (213)
Q Consensus       103 l~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~--------------------------------------  144 (213)
                      |+||||+||..+++|++++||++|||+++|+|||+++|+++.                                      
T Consensus         1 l~~Virirg~~g~~~~~r~tL~~LgL~k~~~~v~~~~t~~~~gmL~kV~~~V~~ge~~~~tv~~Li~kRG~~~~~~~~~~   80 (159)
T cd01657           1 LYAVVRIRGIVGVPPKIRKTLQLLRLRRINNAVFVKLTKATIGMLKKVEPYVTWGEPNLETLRELIYKRGRLKGNGQRIP   80 (159)
T ss_pred             CEEEEEecCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHHhhhheEeccCcHHHHHHHHHHhCeecCCCeeee
Confidence            689999999999999999999999999999999999999998                                      


Q ss_pred             -------c---ccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhhC
Q psy1312         145 -------G---KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV  213 (213)
Q Consensus       145 -------G---~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM~  213 (213)
                             .   ++||+|+||||||||++|++|+++++|||||+||||++||++++++|++||++||||++||+||++|+
T Consensus        81 ltdn~iie~~l~~gi~ciedlv~~i~~~~~~f~~~~~~l~pF~L~~P~~g~~~~~~~~~~gG~~G~r~~~In~Li~~m~  159 (159)
T cd01657          81 LTDNYLVEKTLKKGIICIEDLAHEIYTGGPNFKEVNNFLPPFRLHPPRGGFKGKKRHFSEGGELGYRGEDINELIRRMI  159 (159)
T ss_pred             CChHHHHHHHcccCcccHHHHHHHHHhCccCHHHhhccCCCeECCCcccchhccccccccCCCCCccHHHHHHHHHHhC
Confidence                   1   24999999999999999999999999999999999999999888999999999999999999999997

The eukaryotic L7 members have an N-terminal extension not found in the archeal L7 orthologs. L7 is closely related to the ribosomal L30 protein found in eukaryotes and prokaryotes.

>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.76  E-value=1.2e-18  Score=126.47  Aligned_cols=71  Identities=59%  Similarity=0.856  Sum_probs=64.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Q psy1312          31 SVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEA  101 (213)
Q Consensus        31 ~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~  101 (213)
                      ||||||++++++++.++++..+.+..++.+++.+|+|||+|++||+++|+|+|+++|+|++.||||||+||
T Consensus         1 s~LKKrK~~~~~~~~~~~~~~~~k~~~~~~r~~~~kRAekY~kEYr~~erd~Irl~R~Ak~~G~fyvpaEp   71 (71)
T PF08079_consen    1 SLLKKRKRNEKLKAKRAKKAAARKKKRKKKRKEIFKRAEKYVKEYRQKERDEIRLKREAKKAGNFYVPAEP   71 (71)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-SEE----
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccCccCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This presumed domain is found at the N terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [].; PDB: 3IZR_e 3O5H_G 3O58_G 3IZS_e 4A1A_V 4A17_V 4A1E_V 4A1C_V.

>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.08  E-value=1e-10  Score=79.80  Aligned_cols=43  Identities=49%  Similarity=0.670  Sum_probs=39.2

Q ss_pred             eEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       103 l~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      ++||+||||..+.+|++++||++|||+++|++||+++|+++.|
T Consensus         1 ~l~V~~irs~~g~~~~~~~tl~~LgL~k~~~~v~~~~t~~~~g   43 (52)
T PF00327_consen    1 LLFVTRIRSPIGAPPKVRKTLKALGLRKINQAVFVKNTPSIRG   43 (52)
T ss_dssp             EEEEEESS-STTSSHHHHHHHHHTT-SSTTEEEEEESSHHHHH
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEECCHHHHH
Confidence            5899999999999999999999999999999999999998875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....

>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=5.2e-10  Score=77.68  Aligned_cols=42  Identities=40%  Similarity=0.473  Sum_probs=40.4

Q ss_pred             EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      ++|+|+||..|.+|++++||++|||+++|++|+++.|+++.|
T Consensus         1 ~~V~~iRs~ig~~~~~r~tl~~LgL~kin~~v~~~dtp~irG   42 (55)
T COG1841           1 LKVTLIRSPIGRPPKIRKTLRLLGLRKINHTVIVEDTPAVRG   42 (55)
T ss_pred             CeEEEEeccCCCChHHHHHHHHhCCCccCCEEEEcCCHHHHH
Confidence            479999999999999999999999999999999999999986

>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

Probab=98.83  E-value=2.5e-09  Score=73.31  Aligned_cols=41  Identities=41%  Similarity=0.555  Sum_probs=39.6

Q ss_pred             EEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       105 fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      +|+|+||..+.+|++++||+.|||+++|++||+++|+++.|
T Consensus         1 ~V~~irs~ig~~~~~~~tl~~LgL~k~~~~v~~~~tp~~~g   41 (53)
T cd00355           1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRG   41 (53)
T ss_pred             CEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHH
Confidence            58999999999999999999999999999999999999986

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.

>PRK05611 rpmD 50S ribosomal protein L30; Reviewed

Probab=98.53  E-value=9.3e-08  Score=67.21  Aligned_cols=42  Identities=26%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      +.|+++||..|.+|++++||+.|||+++|++|++++|+++.|
T Consensus         4 ~~I~~vRs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rG   45 (59)
T PRK05611          4 LKITLVKSLIGRKPKQRATLRGLGLRKINSTVELEDTPAIRG   45 (59)
T ss_pred             EEEEEeecCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHH
Confidence            789999999999999999999999999999999999999986

>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa

Probab=98.49  E-value=1.2e-07  Score=65.52  Aligned_cols=41  Identities=22%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             EEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       105 fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      -|.++||..|.+|++++||+.|||+++|++|++++|+++.|
T Consensus         2 ~i~~iRs~ig~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~G   42 (54)
T cd01658           2 KITLVKSLIGRPKKQRATLKALGLKKINQTVVHKDTPSIRG   42 (54)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHH
Confidence            58899999999999999999999999999999999999986

L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.

>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle

Probab=98.41  E-value=2.4e-07  Score=64.27  Aligned_cols=41  Identities=32%  Similarity=0.351  Sum_probs=39.2

Q ss_pred             EEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       105 fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      -|+++||..|.+|+.++||+.|||+++|++|++++||++.|
T Consensus         2 kItlvrs~ig~~~~~r~tl~~LgL~k~~~~v~~~dtp~irG   42 (55)
T TIGR01308         2 KVTLVRSLIGRPKKQRKTLKALGLRKIGRQVVLEDNPAIRG   42 (55)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHH
Confidence            47899999999999999999999999999999999999986

This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	213
2zkr_w	270	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-52
3izr_e	244	Localization Of The Large Subunit Ribosomal Protein		3e-44
4a17_V	239	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-39
3izs_e	244	Localization Of The Large Subunit Ribosomal Protein		5e-38
3zf7_w	257	High-resolution Cryo-electron Microscopy Structure		4e-33
1s1i_F	162	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		9e-28
3jyw_F	213	Structure Of The 60s Proteins For Eukaryotic Riboso		1e-27
3j21_Y	155	Promiscuous Behavior Of Proteins In Archaeal Riboso		9e-04

>pdb|2ZKR|WW Chain w, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 270

Iteration: 1
 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 111/237 (46%), Positives = 141/237 (59%), Gaps = 49/237 (20%)
Query: 25  LPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIR 84
           +P VPE++ KKR+     ++  L KK      RK + + I+ +A+ Y K YR   R EIR
Sbjct: 33  VPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIR 92
Query: 85  LMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV 144
           + R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI NG FV+LNK S+
Sbjct: 93  MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI 152
Query: 145 -------------------------------------------------GKQNIICVEDL 155
                                                            GK  IIC+EDL
Sbjct: 153 NMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDL 212
Query: 156 IHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
           IHE++TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRED+IN+L+R+M
Sbjct: 213 IHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM 269

>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 244

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 55/238 (23%)
Query: 27  VVPESVLKKRKKRENSRIISLHKKLTALANRKK---KTREIFIRAEKYVKAYRAKERDEI 83
            VPE V+ KR++ E   + +  KK    A + K    T+ I+ RAE+Y   Y A++++ +
Sbjct: 9   AVPEKVILKRRREE---VWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELV 65
Query: 84  RLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS 143
           +L REA+ +G +Y+  EAK  FV+RIRGIN + PK +K LQLLRLRQI NG+F+++NK +
Sbjct: 66  QLKREARMKGGFYVSPEAKPLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKAT 125
Query: 144 V-------------------------------------------------GKQNIICVED 154
           +                                                 GK NIIC+ED
Sbjct: 126 INMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEGLGKHNIICIED 185
Query: 155 LIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM 212
           L+HE+ TVG +FK A+N LWPFKL  P GG +KK  HYVEGGD GNRE+ IN+L+R+M
Sbjct: 186 LVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLVRRM 243

>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 239

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 126/235 (53%), Gaps = 49/235 (20%)
Query: 28  VPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMR 87
           VPE+V KK  + E  R     ++  + A  K++  E   +A+KY   Y A E+  +   R
Sbjct: 5   VPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKR 64
Query: 88  EAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKV----- 142
           +A+K G +Y+P EAK+AF IRIRG+N++ P V++ L+L RLRQ++NG F R+NK      
Sbjct: 65  KARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMI 124
Query: 143 --------------------------------------------SVGKQNIICVEDLIHE 158
                                                       S+GK  I CVEDLIHE
Sbjct: 125 KRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDNTIVEKSLGKFGITCVEDLIHE 184
Query: 159 VFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
           + TVG +FK A+N LWPFKL+ P GG+R K   Y +GGD+GNRE  IN L++ M+
Sbjct: 185 ITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML 239

>pdb|3IZS|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 244

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 51/237 (21%)
Query: 27  VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
           + PES LKK K ++ +      ++    A  K+K   I  R   Y K Y   ER+ I+  
Sbjct: 7   LTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAK 66
Query: 87  REAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVS--- 143
           R+AK  G+YY+  + KL FV+RI+GIN++ PK RK LQLLRL +IN+G FV++ K +   
Sbjct: 67  RDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLEL 126
Query: 144 ----------------------------------------------VGKQNIICVEDLIH 157
                                                         +GK  I+ ++DLIH
Sbjct: 127 LKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIH 186
Query: 158 EVFTVGDNFKYASNALWPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKM 212
           E+ TVG +FK A+N LWPFKL+NP+GGW   +K  H+++GG FGNRE+ INKL++ M
Sbjct: 187 EIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSM 243

>pdb|3ZF7|WW Chain w, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 257

Iteration: 1
 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 105/198 (53%), Gaps = 49/198 (24%)
Query: 65  FIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQ 124
           + R  KY + YR+ E+    L R A++ GNYY+  + K+A V RIRGI +V PK RK LQ
Sbjct: 60  YSRGLKYSREYRSTEKKLAGLRRNARQHGNYYLEAKPKVAVVTRIRGIAKVPPKQRKILQ 119
Query: 125 LLRLRQINNGIFVRLNK------------VSVG--------------------------- 145
           LLRLRQI N +FVRLNK            ++ G                           
Sbjct: 120 LLRLRQIFNTVFVRLNKPMENMLRAVEPYIAYGYPSLSTVRAMVYKRGHLKINGQRVKIT 179
Query: 146 ----------KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEG 195
                       +I+C ED++++++  G +F+  +N LWPFKL  P GG R+K  H+VEG
Sbjct: 180 DNQMIKDKYHNDDIVCAEDIVNQIYACGKHFRTVTNGLWPFKLAPPAGGMRQKRRHFVEG 239
Query: 196 GDFGNREDKINKLLRKMV 213
           GD+GNR+  IN+ L +M+
Sbjct: 240 GDYGNRDTLINRFLARMI 257

>pdb|1S1I|F Chain F, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 162

Iteration: 1
 Score =  119 bits (299), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 51/161 (31%)
Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------ 144
           L FV+RI+GIN++ PK RK LQLLRL +IN+G FV++ K ++                  
Sbjct: 1   LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 60
Query: 145 -------------------------------GKQNIICVEDLIHEVFTVGDNFKYASNAL 173
                                          GK  I+ ++DLIHE+ TVG +FK A+N L
Sbjct: 61  TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 120
Query: 174 WPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKM 212
           WPFKL+NP+GGW   +K  H+++GG FGNRE+ INKL++ M
Sbjct: 121 WPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSM 161

>pdb|3JYW|F Chain F, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 213

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 51/161 (31%)
Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------ 144
           L FV+RI+GIN++ PK RK LQLLRL +IN+G FV++ K ++                  
Sbjct: 52  LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYS 111
Query: 145 -------------------------------GKQNIICVEDLIHEVFTVGDNFKYASNAL 173
                                          GK  I+ ++DLIHE+ TVG +FK A+N L
Sbjct: 112 TIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFL 171
Query: 174 WPFKLNNPTGGW--RKKTIHYVEGGDFGNREDKINKLLRKM 212
           WPFKL+NP+GGW   +K  H+++GG FGNRE+ INKL++ M
Sbjct: 172 WPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSM 212

>pdb|3J21|Y Chain Y, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 155

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 43/155 (27%)
Query: 101 AKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFV--------RLNK----VSVGKQN 148
           AKLA VIRIRG   V   VR TL +LRL ++N+ + V         L K    ++ G+ N
Sbjct: 2   AKLA-VIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEIN 60
Query: 149 I-----------------------------ICVEDLIHEVFTVGDNFKYASNALWPFKLN 179
                                         + +E+   +V     + K   N    F+L+
Sbjct: 61  AETLAKLIRKRGRLIGNKPVTDEYVKEKLGMTIEEFAQKVVNGEMSLKDLPNLKPVFRLH 120
Query: 180 NPTGGWR-KKTIHYVEGGDFGNREDKINKLLRKMV 213
            P GG+R  K   + EGG  G R +KIN+L+ +M+
Sbjct: 121 PPRGGFRGSKKRSFKEGGALGYRGEKINELIERML 155

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	213
4a17_V	239	RPL7, 60S ribosomal protein L7; eukaryotic ribosom	2e-46
2zkr_w	270	60S ribosomal protein L7; protein-RNA complex, 60S	2e-45
3izc_e	244	60S ribosomal protein RPL7 (L30P); eukaryotic ribo	2e-45
3iz5_e	244	60S ribosomal protein L7 (L30P); eukaryotic riboso	9e-44
3jyw_F	213	60S ribosomal protein L7(A); eukaryotic ribosome,	1e-43
1vq8_W	154	50S ribosomal protein L30P; ribosome 50S, protein-	5e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V Length = 239

 Score =  152 bits (384), Expect = 2e-46
 Identities = 90/236 (38%), Positives = 126/236 (53%), Gaps = 49/236 (20%)

Query: 27  VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLM 86
            VPE+V KK  + E  R     ++  + A  K++  E   +A+KY   Y A E+  +   
Sbjct: 4   FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEK 63

Query: 87  REAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK----- 141
           R+A+K G +Y+P EAK+AF IRIRG+N++ P V++ L+L RLRQ++NG F R+NK     
Sbjct: 64  RKARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNM 123

Query: 142 --------------------------------------------VSVGKQNIICVEDLIH 157
                                                        S+GK  I CVEDLIH
Sbjct: 124 IKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDNTIVEKSLGKFGITCVEDLIH 183

Query: 158 EVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV 213
           E+ TVG +FK A+N LWPFKL+ P GG+R K   Y +GGD+GNRE  IN L++ M+
Sbjct: 184 EITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML 239

>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 270

 Score =  151 bits (381), Expect = 2e-45
 Identities = 114/250 (45%), Positives = 144/250 (57%), Gaps = 49/250 (19%)

Query: 12  GKPKEPKPKTKKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKY 71
            K        KK +P VPE++ KKR+     ++  L KK      RK + + I+ +A+ Y
Sbjct: 20  KKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHY 79

Query: 72  VKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQI 131
            K YR   R EIR+ R A+K GN+Y+P E KLAFVIRIRGIN V+PKVRK LQLLRLRQI
Sbjct: 80  HKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQI 139

Query: 132 NNGIFVRLNK-------------------------------------------------V 142
            NG FV+LNK                                                  
Sbjct: 140 FNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIAR 199

Query: 143 SVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNRE 202
           S+GK  IIC+EDLIHE++TVG  FK A+N LWPFKL++P GG +KKT H+VEGGD GNRE
Sbjct: 200 SLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNRE 259

Query: 203 DKINKLLRKM 212
           D+IN+L+R+M
Sbjct: 260 DQINRLIRRM 269

>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F Length = 213

 Score =  144 bits (364), Expect = 1e-43
 Identities = 71/211 (33%), Positives = 96/211 (45%), Gaps = 51/211 (24%)

Query: 53  ALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFVIRIRGI 112
           A A            A     A  A           A           A L FV+RI+GI
Sbjct: 2   AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGLVFVVRIKGI 61

Query: 113 NRVAPKVRKTLQLLRLRQINNGIFVRLNK------------------------------- 141
           N++ PK RK LQLLRL +IN+G FV++ K                               
Sbjct: 62  NKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRG 121

Query: 142 ------------------VSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTG 183
                              ++GK  I+ ++DLIHE+ TVG +FK A+N LWPFKL+NP+G
Sbjct: 122 FGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSG 181

Query: 184 GW--RKKTIHYVEGGDFGNREDKINKLLRKM 212
           GW   +K  H+++GG FGNRE+ INKL++ M
Sbjct: 182 GWGVPRKFKHFIQGGSFGNREEFINKLVKSM 212

>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ... Length = 154

 Score =  120 bits (302), Expect = 5e-35
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 47/155 (30%)

Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG----------------- 145
           +  ++++RG   +   ++ TL++L +  +N+   V       G                 
Sbjct: 1   MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQE 60

Query: 146 --------------------------KQNIICVEDLIHEVFTVGDNFKYASNALWP-FKL 178
                                       +   +  L   + +     +     L P  +L
Sbjct: 61  TLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLR--EQGLSPTLRL 118

Query: 179 NNPTGGWRKKTIHYVEGGDFGN-REDKINKLLRKM 212
           + P GG         EGG  G    + I+ LL  M
Sbjct: 119 HPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 52/185 (28%)

Query: 31  SVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAK 90
           S+++K+ K     I S++ +L      +       +  + Y    +  + D++       
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV--DHY-NIPKTFDSDDLIPPYL-- 469

Query: 91  KRGNY---YI--------PGEAK---------LAFV---IRIRGINRVAP-KVRKTLQLL 126
               Y   +I          E             F+   IR       A   +  TLQ L
Sbjct: 470 --DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 127 RL--RQI--NNGIFVRLNKVSVGKQNIICVEDLIHEVFTVGDNF---KYASNALWPFKLN 179
           +     I  N+  + RL            V  ++  +  + +N    KY    L    L 
Sbjct: 528 KFYKPYICDNDPKYERL------------VNAILDFLPKIEENLICSKYTD--LLRIALM 573

Query: 180 NPTGG 184
                
Sbjct: 574 AEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	213
4a17_V	239	RPL7, 60S ribosomal protein L7; eukaryotic ribosom	100.0
3iz5_e	244	60S ribosomal protein L7 (L30P); eukaryotic riboso	100.0
3izc_e	244	60S ribosomal protein RPL7 (L30P); eukaryotic ribo	100.0
2zkr_w	270	60S ribosomal protein L7; protein-RNA complex, 60S	100.0
1vq8_W	154	50S ribosomal protein L30P; ribosome 50S, protein-	100.0
3jyw_F	213	60S ribosomal protein L7(A); eukaryotic ribosome,	100.0
3j21_Y	155	50S ribosomal protein L30P; archaea, archaeal, KIN	100.0
1bxy_A	60	Protein (ribosomal protein L30); X-RAY crystallogr	98.17
3r8s_Z	58	50S ribosomal protein L30; protein biosynthesis, R	98.1
2zjr_W	55	50S ribosomal protein L30; ribosome, large ribosom	98.06

>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V

Probab=100.00  E-value=2.1e-66  Score=450.85  Aligned_cols=187  Identities=48%  Similarity=0.829  Sum_probs=182.5

Q ss_pred             CCchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCeeEEE
Q psy1312          27 VVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEAKLAFV  106 (213)
Q Consensus        27 ~vpE~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~kl~fV  106 (213)
                      +|||++|||||+++++++++++++.+.+..++++++.+|+|||+|++||+++++|.+|++|+|+++|+||+|+||+|+||
T Consensus         4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~kl~fV   83 (239)
T 4a17_V            4 FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAKVAFA   83 (239)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCCEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceEEEE
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc------------------------------------------
Q psy1312         107 IRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------------------------------  144 (213)
Q Consensus       107 IRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~------------------------------------------  144 (213)
                      |||||++++||++++||++|||+++|+|||+++|+++.                                          
T Consensus        84 irIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~Ltdn  163 (239)
T 4a17_V           84 IRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDN  163 (239)
T ss_dssp             EECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEECCCS
T ss_pred             EEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceecCChh
Confidence            99999999999999999999999999999999999988                                          


Q ss_pred             -------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhhC
Q psy1312         145 -------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKMV  213 (213)
Q Consensus       145 -------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM~  213 (213)
                             |+|||+|+||||||||++|++|+++++|||||+||||+|||++++.||.+||++||||+.||+||++|+
T Consensus       164 ~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~  239 (239)
T 4a17_V          164 TIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML  239 (239)
T ss_dssp             HHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred             HHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence                   789999999999999999999999999999999999999999888999999999999999999999997

>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=2.2e-65  Score=450.82  Aligned_cols=192  Identities=59%  Similarity=0.963  Sum_probs=107.1

Q ss_pred             CCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Q psy1312          22 KKGLPVVPESVLKKRKKRENSRIISLHKKLTALANRKKKTREIFIRAEKYVKAYRAKERDEIRLMREAKKRGNYYIPGEA  101 (213)
Q Consensus        22 ~~~l~~vpE~lLKKrK~~~~~~~~~~~~~~~~k~~~k~~rk~~fkrae~yvkey~~~erd~~r~kR~akk~~~~yvp~e~  101 (213)
                      .+++|+|||++|||||+++++++++++++.+.+..++++++.+|+|||+|+++|+++++|.+|++|+|+++|+||+|+||
T Consensus        30 ~~~~~~vpE~llKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~eyr~~~r~~ir~~r~akk~g~~yvp~e~  109 (270)
T 2zkr_w           30 KKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEP  109 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc-------------------------------------
Q psy1312         102 KLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV-------------------------------------  144 (213)
Q Consensus       102 kl~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~-------------------------------------  144 (213)
                      +|+||+||||++|++|++++||++|||+++|++||+++|+++.                                     
T Consensus       110 kl~~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~ki~~k~i  189 (270)
T 2zkr_w          110 KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRI  189 (270)
T ss_dssp             -CEEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCSSSSSCS
T ss_pred             ceeEEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccccCCeee
Confidence            9999999999999999999999999999999999999999987                                     


Q ss_pred             ------------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCChHHHHHHHHhh
Q psy1312         145 ------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNREDKINKLLRKM  212 (213)
Q Consensus       145 ------------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~~~IN~LI~rM  212 (213)
                                  |++||+|+||||||||++|+||+++++|||||+||||+|||++++.||++||++||||++||+||++|
T Consensus       190 ~LtdN~iIee~LG~~giiciEDliheI~t~g~~fk~~~~fl~pFkL~~P~~G~k~k~~~~~egG~~G~r~~~IN~Li~rM  269 (270)
T 2zkr_w          190 ALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRM  269 (270)
T ss_dssp             CSSHHHHSSSSSCSSCCCSHHHHHHHTSSCSSCCSSSSSCCSCEECCCCSSCCSCSSCC-CCSCSCC-CCTTTTTTTTTC
T ss_pred             eCCchHHHHhhccCcCcchHHHHHHHHHhccccHHHHhCcCCCeeCCCccccccccccccccCCcccccHHHHHHHHHHh
Confidence                        78999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             C
Q psy1312         213 V  213 (213)
Q Consensus       213 ~  213 (213)
                      |
T Consensus       270 ~  270 (270)
T 2zkr_w          270 N  270 (270)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...

Probab=100.00  E-value=2.2e-42  Score=283.03  Aligned_cols=110  Identities=18%  Similarity=0.344  Sum_probs=106.6

Q ss_pred             eEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc--------------------------------------
Q psy1312         103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV--------------------------------------  144 (213)
Q Consensus       103 l~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~--------------------------------------  144 (213)
                      |+||+||||.++++|++++||++|||+++|++||+++|+++.                                      
T Consensus         1 l~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~~~lt   80 (154)
T 1vq8_W            1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVD   80 (154)
T ss_dssp             CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSCCCCS
T ss_pred             CEEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCCccCC
Confidence            689999999999999999999999999999999999999988                                      


Q ss_pred             -----cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCCCCh-HHHHHHHHhhC
Q psy1312         145 -----GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFGNRE-DKINKLLRKMV  213 (213)
Q Consensus       145 -----G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G~r~-~~IN~LI~rM~  213 (213)
                           .++||+|+||||||||++|++|+++ +|||||+||||++||+++++||.+||++|||| ++||+||++|+
T Consensus        81 dn~iie~~gi~ciedlihei~~~g~~f~~~-~fl~pF~L~~P~~G~~~~~~~~~egG~~G~r~~~~In~Li~rM~  154 (154)
T 1vq8_W           81 DEWVAEHTDYDDISGLAFALLSEETTLREQ-GLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR  154 (154)
T ss_dssp             HHHHHHHSSSSSHHHHHHHHHTTSCCTGGG-TBCSCEECCCCTTCCSCSSSBGGGTCSBEECCHHHHHHHHHHTC
T ss_pred             chhhccccccccHHHHHHHHHhCCcchhhc-CCcCceecCCccccccccccccccCCccccccHHHHHHHHHHhC
Confidence                 1589999999999999999999999 99999999999999998889999999999999 99999999997

>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F

Probab=100.00  E-value=2.1e-42  Score=295.97  Aligned_cols=119  Identities=55%  Similarity=0.999  Sum_probs=115.0

Q ss_pred             cccCCCCeeEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc------------------------------
Q psy1312          95 YYIPGEAKLAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV------------------------------  144 (213)
Q Consensus        95 ~yvp~e~kl~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~------------------------------  144 (213)
                      ..+|.+++++||||++|++++++.++++|++|||+++|+||||++|+++.                              
T Consensus        44 ~Svp~e~kL~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~  123 (213)
T 3jyw_F           44 AAAAAAAGLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFG  123 (213)
T ss_dssp             HTCSCCCCCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCC
T ss_pred             hhCcccCccceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcc
Confidence            46899999999999999999999999999999999999999999999988                              


Q ss_pred             -------------------cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCccc--ccccccccCCCCCCChH
Q psy1312         145 -------------------GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWR--KKTIHYVEGGDFGNRED  203 (213)
Q Consensus       145 -------------------G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~--~~~~~~~~GG~~G~r~~  203 (213)
                                         |++||+|+|||||||+++|++|+++++|||||+||||++||+  ++++||.+||++||||+
T Consensus       124 k~~~~~i~ltdn~iie~~lg~~gi~ciedli~ei~~~g~~f~~~~~fl~pF~L~~P~~G~~~~~~~~~~~egG~~G~r~~  203 (213)
T 3jyw_F          124 KINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREE  203 (213)
T ss_dssp             SSSCCSSCSSSHHHHSSSSCCSCCCCHHHHHHHHTTTCSSCTTTTTSCSSBCCCCCTTCCSSSSSSCCTTTSCSSSEESS
T ss_pred             cCCCCeecCCcchHHHHhccCCCceeHHHHHHHHHhCCcCHHHhhCCCCCEECCCCCCCccCCCeecccccCCCCCCcHH
Confidence                               689999999999999999999999999999999999999999  67799999999999999


Q ss_pred             HHHHHHHhhC
Q psy1312         204 KINKLLRKMV  213 (213)
Q Consensus       204 ~IN~LI~rM~  213 (213)
                      .||+||++||
T Consensus       204 ~In~Li~~m~  213 (213)
T 3jyw_F          204 FINKLVKSMN  213 (213)
T ss_dssp             THHHHHTTCC
T ss_pred             HHHHHHHHhC
Confidence            9999999997

>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=6.9e-42  Score=280.39  Aligned_cols=109  Identities=36%  Similarity=0.560  Sum_probs=105.2

Q ss_pred             EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc---------------------------c-----------
Q psy1312         104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV---------------------------G-----------  145 (213)
Q Consensus       104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~---------------------------G-----------  145 (213)
                      ++|+||||.++++|++++||++|||+++|++||+++|+++.                           |           
T Consensus         4 ~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~~~~~~~ltdn   83 (155)
T 3j21_Y            4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGRLIGNKPVTDE   83 (155)
T ss_dssp             EEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCCSSSSCCCCHH
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhccccCCCcCCHH
Confidence            89999999999999999999999999999999999999988                           2           


Q ss_pred             ----ccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccc-cccccccCCCCCCChHHHHHHHHhhC
Q psy1312         146 ----KQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRK-KTIHYVEGGDFGNREDKINKLLRKMV  213 (213)
Q Consensus       146 ----~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~-~~~~~~~GG~~G~r~~~IN~LI~rM~  213 (213)
                          ++|| |+||||||||++|++|+++++|||||+||||++||++ ++.||.+||++||||+.||+||++|+
T Consensus        84 ~l~ek~gi-ciEdli~eI~~~g~~fk~~~~fl~pFkL~~P~~G~k~~~~~~~~egG~~G~r~~~In~Li~rM~  155 (155)
T 3j21_Y           84 YVKEKLGM-TIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML  155 (155)
T ss_dssp             HHHHHSSS-CHHHHHHHHHHTSSCTTTSCSSCSEEECCCCTTCSSSCSSSBTTTTSSBEECCTTHHHHHHHTC
T ss_pred             HHHHHhCC-CHHHHHHHHHhCCcCHHHhhCcCCceecCCccchhhcccccccccCCCCcCcHHHHHHHHHHcC
Confidence                4899 9999999999999999999999999999999999994 77999999999999999999999996

>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...

Probab=98.17  E-value=1.2e-06  Score=60.88  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      +.|.++||..|.+++.++||+.|||+++|++|+++.||++.|
T Consensus         4 ~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG   45 (60)
T 1bxy_A            4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRG   45 (60)
T ss_dssp             EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHH
T ss_pred             EEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHh
Confidence            779999999999999999999999999999999999999886

>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...

Probab=98.10  E-value=2e-06  Score=59.33  Aligned_cols=43  Identities=23%  Similarity=0.165  Sum_probs=40.8

Q ss_pred             eEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       103 l~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      -+-|.++||..|.+++.++||+.|||+++|++|++++||++.|
T Consensus         3 ~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG   45 (58)
T 3r8s_Z            3 TIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRG   45 (58)
T ss_dssp             EEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHH
T ss_pred             eEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHH
Confidence            4678999999999999999999999999999999999999886

>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*

Probab=98.06  E-value=1.6e-06  Score=59.18  Aligned_cols=41  Identities=24%  Similarity=0.186  Sum_probs=39.0

Q ss_pred             EEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         105 FVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       105 fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      -|.++||..|.+++.++||+.|||+++|++|++++|+++.|
T Consensus         2 kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG   42 (55)
T 2zjr_W            2 KIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRG   42 (55)
T ss_dssp             EEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHH
Confidence            47899999999999999999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	213
d1vqow1	154	d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon H	5e-28

>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 154

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  101 bits (253), Expect = 5e-28
 Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 45/154 (29%)

Query: 103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNK--------------------- 141
           +  ++++RG   +   ++ TL++L +  +N+   V                         
Sbjct: 1   MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQE 60

Query: 142 ----------------------VSVGKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLN 179
                                       +   +  L   + +  +            +L+
Sbjct: 61  TLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLS-EETTLREQGLSPTLRLH 119

Query: 180 NPTGGWRKKTIHYVEGGDFGN-REDKINKLLRKM 212
            P GG         EGG  G    + I+ LL  M
Sbjct: 120 PPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	213
d1vqow1	154	Archaeal L30 (L30a) {Archaeon Haloarcula marismort	100.0
d2gycx1	56	Prokaryotic ribosomal protein L30 {Escherichia col	97.96
d1bxya_	60	Prokaryotic ribosomal protein L30 {Thermus thermop	97.82
d2zjrw1	55	Prokaryotic ribosomal protein L30 {Deinococcus rad	97.3

>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Archaeal L30 (L30a)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=4.7e-40  Score=267.31  Aligned_cols=110  Identities=18%  Similarity=0.324  Sum_probs=104.2

Q ss_pred             eEEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCcccc--------------------------------------
Q psy1312         103 LAFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSV--------------------------------------  144 (213)
Q Consensus       103 l~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~--------------------------------------  144 (213)
                      |++||||||..+++|++++||++|||+++|+|||+++|+++.                                      
T Consensus         1 m~aViRIRg~ig~~~~~r~tL~~LrL~k~~~~V~~~~tp~~~gML~kVk~yVt~G~~~~~tv~~Li~kRG~~~~g~~~lt   80 (154)
T d1vqow1           1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVD   80 (154)
T ss_dssp             CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSTTSEEEECCCHHHHHHHHHHHCCBSSSCCCCC
T ss_pred             CeeEEEecCCCCCCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHhhccceeEecCCHHHHHHHHHHhcccccCCCcCC
Confidence            689999999999999999999999999999999999999998                                      


Q ss_pred             -----cccccccHHHHHHHHHhcCcchhhhhcCCCCeecCCCCCcccccccccccCCCCC-CChHHHHHHHHhhC
Q psy1312         145 -----GKQNIICVEDLIHEVFTVGDNFKYASNALWPFKLNNPTGGWRKKTIHYVEGGDFG-NREDKINKLLRKMV  213 (213)
Q Consensus       145 -----G~~giiciEDliheI~~~g~~fk~v~~fl~pF~L~~P~~G~~~~~~~~~~GG~~G-~r~~~IN~LI~rM~  213 (213)
                           +++||+|+|||||+|++ |++|.++++|+|||+||||++||++++++|.+||++| |||+.||+||++|-
T Consensus        81 ~e~i~~~~g~~~iedl~~~i~~-g~~~~~~~~~~~pFrL~pP~~g~~~~k~~~~~gG~~Gnyrge~IN~Li~rM~  154 (154)
T d1vqow1          81 DEWVAEHTDYDDISGLAFALLS-EETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR  154 (154)
T ss_dssp             HHHHHHHSSSSSHHHHHHHHHT-TSCCTTTTTBCSEEECCCCTTCCSCSSSBGGGTSSBEECCHHHHHHHHHHTC
T ss_pred             HhHhccccCcccHHHHHHHHHc-CCceeeccCCcCCeeCCCcccchhhcccccccCCccCCccHHHHHHHHHHcC
Confidence                 36799999999999998 7777778999999999999999999889999999999 59999999999993

>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=2.9e-06  Score=56.53  Aligned_cols=42  Identities=24%  Similarity=0.179  Sum_probs=39.7

Q ss_pred             EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      +-|.++||..|.+++.++||+.|||+++|+.|++++||++.|
T Consensus         2 ikItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG   43 (56)
T d2gycx1           2 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRG   43 (56)
T ss_dssp             EEEEECSCSSSCCTTHHHHHHHHTCCSTTCEEEECCCTTHHH
T ss_pred             EEEEEecCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHH
Confidence            457899999999999999999999999999999999999986

>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=6.1e-06  Score=55.58  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=39.8

Q ss_pred             EEEEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         104 AFVIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       104 ~fVIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      +-|.++||..|.+++.++||+.|||+++|+.|++++||++.|
T Consensus         4 lkIt~vrS~iG~~~~~k~tl~~LGL~k~~~~v~~~~tp~i~G   45 (60)
T d1bxya_           4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRG   45 (60)
T ss_dssp             EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHH
T ss_pred             EEEEEecCCCCCCHHHHHHHHHcCCCCCCCEEEeCCCHHHHH
Confidence            467889999999999999999999999999999999999986

>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L30p/L7e
superfamily: Ribosomal protein L30p/L7e
family: Ribosomal protein L30p/L7e
domain: Prokaryotic ribosomal protein L30
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.30  E-value=5.3e-05  Score=50.05  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=37.6

Q ss_pred             EEEecCCCCCCHHHHHHHHhcCcccccceEEEecCccccc
Q psy1312         106 VIRIRGINRVAPKVRKTLQLLRLRQINNGIFVRLNKVSVG  145 (213)
Q Consensus       106 VIRirG~~~v~~~v~k~L~lLrL~~in~~vfvk~n~~t~G  145 (213)
                      |-.+||..|.+++.+++|+.|||+++|+.|.+++||++.|
T Consensus         3 ItlvrS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtp~irG   42 (55)
T d2zjrw1           3 IKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRG   42 (55)
T ss_dssp             EEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHH
T ss_pred             EEEEcCCCCCCHHHHHHHHHhCCCCCCCEEEeCCCHHHHH
Confidence            4568999999999999999999999999999999999986